Query 005860
Match_columns 673
No_of_seqs 387 out of 3852
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 09:24:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005860.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005860hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 3.2E-43 1.1E-47 390.7 19.0 282 172-473 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.2E-35 4.2E-40 333.6 15.2 256 170-465 129-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 5.7E-33 2E-37 340.0 22.1 278 164-471 119-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 5.9E-30 2E-34 288.2 19.5 270 167-468 122-449 (591)
5 3qfl_A MLA10; coiled-coil, (CC 99.7 1.9E-16 6.5E-21 135.1 8.5 80 4-87 1-82 (115)
6 4fcg_A Uncharacterized protein 99.5 4.1E-15 1.4E-19 153.9 6.3 169 491-672 103-284 (328)
7 4fcg_A Uncharacterized protein 99.5 3.9E-14 1.3E-18 146.6 7.2 149 491-650 126-284 (328)
8 2qen_A Walker-type ATPase; unk 99.4 5.8E-13 2E-17 139.0 13.3 172 166-354 9-249 (350)
9 4b8c_D Glucose-repressible alc 99.4 3.6E-13 1.2E-17 153.9 9.9 150 492-649 173-322 (727)
10 1ogq_A PGIP-2, polygalacturona 99.4 4.9E-13 1.7E-17 137.3 8.7 129 508-648 94-226 (313)
11 1w5s_A Origin recognition comp 99.4 4.7E-12 1.6E-16 135.3 16.3 171 168-339 21-221 (412)
12 2o6q_A Variable lymphocyte rec 99.4 7.9E-13 2.7E-17 132.7 8.4 146 491-648 36-186 (270)
13 4ezg_A Putative uncharacterize 99.3 1.5E-12 5E-17 124.1 8.7 144 491-650 43-188 (197)
14 1ozn_A Reticulon 4 receptor; N 99.3 9.9E-13 3.4E-17 133.1 7.0 102 539-648 101-206 (285)
15 1p9a_G Platelet glycoprotein I 99.3 1.9E-12 6.4E-17 131.3 7.8 145 491-649 30-178 (290)
16 3e6j_A Variable lymphocyte rec 99.3 2.1E-12 7.1E-17 126.2 7.6 120 515-646 40-162 (229)
17 3m19_A Variable lymphocyte rec 99.3 2.4E-12 8.3E-17 127.6 7.9 147 491-649 34-185 (251)
18 1ozn_A Reticulon 4 receptor; N 99.3 1.6E-12 5.5E-17 131.6 5.9 143 493-647 33-181 (285)
19 3m19_A Variable lymphocyte rec 99.3 2.7E-12 9.2E-17 127.3 7.2 165 494-672 16-186 (251)
20 1h6u_A Internalin H; cell adhe 99.3 3.1E-12 1E-16 131.0 7.3 140 490-648 61-200 (308)
21 2ell_A Acidic leucine-rich nuc 99.3 2.2E-12 7.7E-17 119.4 5.4 129 514-654 23-158 (168)
22 3zyj_A Leucine-rich repeat-con 99.3 3.6E-12 1.2E-16 137.5 7.7 145 491-647 63-211 (440)
23 1ogq_A PGIP-2, polygalacturona 99.3 2.5E-12 8.4E-17 132.1 6.0 145 492-648 101-273 (313)
24 2o6q_A Variable lymphocyte rec 99.3 5.9E-12 2E-16 126.3 8.0 147 491-649 60-211 (270)
25 3zyi_A Leucine-rich repeat-con 99.3 3.2E-12 1.1E-16 138.5 6.4 145 491-647 74-222 (452)
26 3rfs_A Internalin B, repeat mo 99.3 8.2E-12 2.8E-16 125.4 9.0 147 490-649 61-211 (272)
27 3rfs_A Internalin B, repeat mo 99.3 6E-12 2.1E-16 126.4 7.9 167 491-672 40-212 (272)
28 2ell_A Acidic leucine-rich nuc 99.3 2.8E-12 9.4E-17 118.7 5.0 135 491-639 23-166 (168)
29 2fna_A Conserved hypothetical 99.3 2.5E-11 8.7E-16 126.8 12.9 180 167-363 11-262 (357)
30 1h6u_A Internalin H; cell adhe 99.3 3.9E-12 1.3E-16 130.2 6.5 143 490-651 83-225 (308)
31 2je0_A Acidic leucine-rich nuc 99.3 1.6E-12 5.6E-17 117.7 3.2 125 514-650 16-147 (149)
32 4eco_A Uncharacterized protein 99.2 1.5E-12 5.1E-17 147.1 3.2 108 535-649 198-336 (636)
33 2z66_A Variable lymphocyte rec 99.2 3.7E-12 1.3E-16 130.3 5.6 148 491-647 27-179 (306)
34 4ecn_A Leucine-rich repeat pro 99.2 4.1E-12 1.4E-16 146.7 6.4 139 492-642 491-641 (876)
35 1a9n_A U2A', U2A'; complex (nu 99.2 3.5E-12 1.2E-16 119.1 4.7 130 511-654 15-151 (176)
36 1h6t_A Internalin B; cell adhe 99.2 5.9E-12 2E-16 127.7 6.7 144 490-652 66-209 (291)
37 4ecn_A Leucine-rich repeat pro 99.2 3.9E-12 1.3E-16 146.9 5.6 107 535-648 440-578 (876)
38 2v9t_B SLIT homolog 2 protein 99.2 7.3E-12 2.5E-16 121.4 6.6 121 515-647 32-156 (220)
39 2v70_A SLIT-2, SLIT homolog 2 99.2 9.5E-12 3.3E-16 120.6 7.2 102 539-648 53-158 (220)
40 4eco_A Uncharacterized protein 99.2 4.1E-12 1.4E-16 143.5 4.6 138 492-642 249-399 (636)
41 2z80_A TOLL-like receptor 2, v 99.2 4.3E-12 1.5E-16 132.7 3.8 147 491-648 51-203 (353)
42 1p9a_G Platelet glycoprotein I 99.2 1.2E-11 4.2E-16 125.3 7.0 145 491-649 54-201 (290)
43 3zyj_A Leucine-rich repeat-con 99.2 1.1E-11 3.8E-16 133.7 6.8 168 492-672 112-286 (440)
44 2z62_A TOLL-like receptor 4, v 99.2 9.4E-12 3.2E-16 125.2 5.9 144 491-646 27-176 (276)
45 1m9s_A Internalin B; cell inva 99.2 9E-12 3.1E-16 138.9 6.1 142 490-650 63-204 (605)
46 1h6t_A Internalin B; cell adhe 99.2 3.3E-11 1.1E-15 122.2 9.7 128 491-636 89-216 (291)
47 2z66_A Variable lymphocyte rec 99.2 9.6E-12 3.3E-16 127.2 5.5 131 492-634 101-237 (306)
48 3vq2_A TLR4, TOLL-like recepto 99.2 1.1E-11 3.8E-16 139.4 5.8 146 490-647 30-181 (606)
49 2o6s_A Variable lymphocyte rec 99.2 2.4E-11 8.4E-16 116.6 7.3 128 492-631 28-159 (208)
50 3zyi_A Leucine-rich repeat-con 99.2 1.5E-11 5E-16 133.2 6.2 168 492-672 123-297 (452)
51 2xwt_C Thyrotropin receptor; s 99.2 8.9E-12 3E-16 122.5 4.0 144 492-648 55-210 (239)
52 2z62_A TOLL-like receptor 4, v 99.2 1.7E-11 5.7E-16 123.4 6.1 146 491-648 51-205 (276)
53 4ezg_A Putative uncharacterize 99.2 7.5E-12 2.6E-16 119.1 2.9 144 512-671 41-187 (197)
54 1xeu_A Internalin C; cellular 99.2 5E-11 1.7E-15 118.9 8.9 140 491-650 40-179 (263)
55 3e6j_A Variable lymphocyte rec 99.2 3.1E-11 1.1E-15 117.8 7.1 133 490-634 38-173 (229)
56 4fmz_A Internalin; leucine ric 99.1 3.2E-11 1.1E-15 125.6 6.9 141 491-649 65-205 (347)
57 2v1u_A Cell division control p 99.1 1.6E-09 5.4E-14 114.5 19.9 168 168-339 18-207 (387)
58 2ft3_A Biglycan; proteoglycan, 99.1 8.3E-11 2.8E-15 121.7 9.7 134 491-639 53-191 (332)
59 1dce_A Protein (RAB geranylger 99.1 3.1E-11 1.1E-15 133.7 6.9 86 560-648 451-538 (567)
60 1dce_A Protein (RAB geranylger 99.1 1.2E-11 4.2E-16 136.9 2.9 147 493-649 350-514 (567)
61 4b8c_D Glucose-repressible alc 99.1 2E-11 6.9E-16 139.5 4.8 111 510-633 219-329 (727)
62 2v70_A SLIT-2, SLIT homolog 2 99.1 4.1E-11 1.4E-15 116.1 6.3 131 491-633 31-166 (220)
63 1xku_A Decorin; proteoglycan, 99.1 5.8E-11 2E-15 122.8 7.7 133 491-637 51-188 (330)
64 2qby_B CDC6 homolog 3, cell di 99.1 9.5E-10 3.2E-14 116.1 17.2 169 168-339 19-203 (384)
65 3rgz_A Protein brassinosteroid 99.1 4.6E-11 1.6E-15 138.1 7.5 81 568-648 627-709 (768)
66 4glp_A Monocyte differentiatio 99.1 2.4E-11 8.2E-16 124.5 4.5 115 513-639 143-270 (310)
67 2v9t_B SLIT homolog 2 protein 99.1 5.4E-11 1.8E-15 115.3 6.5 131 491-633 31-165 (220)
68 2xwt_C Thyrotropin receptor; s 99.1 3.3E-11 1.1E-15 118.5 4.7 149 490-648 29-184 (239)
69 3oja_B Anopheles plasmodium-re 99.1 3.2E-11 1.1E-15 135.3 5.0 80 568-648 249-329 (597)
70 2id5_A Lingo-1, leucine rich r 99.1 2.6E-11 9E-16 132.2 4.2 146 491-648 31-181 (477)
71 3vq2_A TLR4, TOLL-like recepto 99.1 5.1E-11 1.7E-15 134.1 6.4 138 499-650 18-160 (606)
72 2je0_A Acidic leucine-rich nuc 99.1 2.6E-11 9E-16 109.6 3.2 124 491-628 16-148 (149)
73 1m9s_A Internalin B; cell inva 99.1 1.8E-10 6.2E-15 128.3 10.6 130 490-637 85-214 (605)
74 3o6n_A APL1; leucine-rich repe 99.1 6.7E-11 2.3E-15 125.4 6.8 143 491-647 44-190 (390)
75 1wwl_A Monocyte differentiatio 99.1 3E-11 1E-15 123.9 3.7 62 572-636 227-290 (312)
76 4fmz_A Internalin; leucine ric 99.1 1E-10 3.4E-15 121.9 7.7 142 490-649 86-227 (347)
77 4glp_A Monocyte differentiatio 99.1 9.3E-11 3.2E-15 120.1 7.4 146 491-648 144-299 (310)
78 1xeu_A Internalin C; cellular 99.1 3.8E-11 1.3E-15 119.8 4.2 121 510-649 36-156 (263)
79 2z81_A CD282 antigen, TOLL-lik 99.1 3.2E-11 1.1E-15 134.0 3.9 147 491-648 25-177 (549)
80 2o6s_A Variable lymphocyte rec 99.1 7.8E-11 2.7E-15 113.0 6.2 124 514-649 27-154 (208)
81 1xku_A Decorin; proteoglycan, 99.1 1.5E-10 5E-15 119.7 8.5 145 492-648 121-268 (330)
82 1ziw_A TOLL-like receptor 3; i 99.1 6.2E-11 2.1E-15 135.3 6.2 148 490-649 23-177 (680)
83 4g8a_A TOLL-like receptor 4; l 99.1 4.6E-11 1.6E-15 135.0 5.0 146 490-647 50-201 (635)
84 3o6n_A APL1; leucine-rich repe 99.1 6.7E-11 2.3E-15 125.4 5.9 127 512-650 42-172 (390)
85 1wwl_A Monocyte differentiatio 99.1 1.2E-10 3.9E-15 119.5 7.5 169 490-672 119-303 (312)
86 3o53_A Protein LRIM1, AGAP0063 99.1 3.4E-11 1.2E-15 123.8 3.2 147 492-651 120-270 (317)
87 3o53_A Protein LRIM1, AGAP0063 99.1 1E-10 3.4E-15 120.3 6.5 143 492-649 99-243 (317)
88 4g8a_A TOLL-like receptor 4; l 99.1 8.5E-11 2.9E-15 132.8 6.5 131 505-649 44-179 (635)
89 2z80_A TOLL-like receptor 2, v 99.1 5.2E-11 1.8E-15 124.4 4.1 139 500-652 39-183 (353)
90 1ds9_A Outer arm dynein; leuci 99.1 2.1E-12 7.3E-17 123.0 -5.9 135 505-654 38-185 (198)
91 2ast_B S-phase kinase-associat 99.1 1.9E-11 6.6E-16 126.7 0.7 147 492-649 93-253 (336)
92 3oja_A Leucine-rich immune mol 99.1 1E-10 3.6E-15 127.5 6.6 146 492-650 120-269 (487)
93 2xot_A Amphoterin-induced prot 99.1 1.1E-10 3.8E-15 122.3 6.5 143 490-644 37-188 (361)
94 3rgz_A Protein brassinosteroid 99.1 1.1E-10 3.7E-15 135.0 6.9 146 492-648 394-543 (768)
95 2z63_A TOLL-like receptor 4, v 99.1 6.6E-11 2.2E-15 132.0 4.8 144 490-645 26-175 (570)
96 2ast_B S-phase kinase-associat 99.1 1.7E-11 5.6E-16 127.2 -0.1 171 492-672 70-254 (336)
97 3oja_B Anopheles plasmodium-re 99.0 1.1E-10 3.7E-15 131.0 6.1 143 491-647 50-196 (597)
98 2z7x_B TOLL-like receptor 1, v 99.0 4E-10 1.4E-14 124.2 10.4 148 490-649 322-474 (520)
99 3oja_A Leucine-rich immune mol 99.0 6.3E-11 2.2E-15 129.2 3.9 143 492-649 99-243 (487)
100 1o6v_A Internalin A; bacterial 99.0 1.4E-10 4.9E-15 125.9 6.6 34 492-526 68-101 (466)
101 1a9n_A U2A', U2A'; complex (nu 99.0 8.3E-11 2.8E-15 109.6 4.0 129 491-634 18-154 (176)
102 2z81_A CD282 antigen, TOLL-lik 99.0 2.4E-10 8.1E-15 126.9 7.9 87 538-637 382-468 (549)
103 2ft3_A Biglycan; proteoglycan, 99.0 1.6E-10 5.5E-15 119.5 6.0 88 543-638 193-282 (332)
104 2z7x_B TOLL-like receptor 1, v 99.0 1.6E-10 5.4E-15 127.5 6.3 125 492-632 21-150 (520)
105 3t6q_A CD180 antigen; protein- 99.0 2.8E-10 9.6E-15 128.0 8.3 131 491-633 277-413 (606)
106 2xot_A Amphoterin-induced prot 99.0 1.3E-10 4.6E-15 121.6 5.1 139 496-648 22-168 (361)
107 1o6v_A Internalin A; bacterial 99.0 3.9E-10 1.3E-14 122.5 8.4 140 491-649 220-359 (466)
108 3bz5_A Internalin-J, INLJ; leu 99.0 1.8E-10 6.3E-15 124.4 5.4 135 491-649 41-176 (457)
109 3j0a_A TOLL-like receptor 5; m 99.0 3.3E-10 1.1E-14 132.4 7.5 148 490-648 22-179 (844)
110 2id5_A Lingo-1, leucine rich r 99.0 4.4E-10 1.5E-14 122.5 7.9 168 493-672 153-327 (477)
111 3v47_A TOLL-like receptor 5B a 99.0 4.4E-10 1.5E-14 121.6 7.6 98 544-649 276-377 (455)
112 1ds9_A Outer arm dynein; leuci 99.0 1.9E-11 6.3E-16 116.5 -3.3 127 514-650 17-147 (198)
113 2wfh_A SLIT homolog 2 protein 99.0 9E-10 3.1E-14 104.2 8.2 120 499-633 17-139 (193)
114 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 4.7E-10 1.6E-14 124.9 7.2 133 495-645 34-169 (562)
115 3bz5_A Internalin-J, INLJ; leu 99.0 5.4E-10 1.8E-14 120.8 7.3 134 491-648 63-196 (457)
116 1w8a_A SLIT protein; signaling 99.0 3.9E-10 1.3E-14 106.6 5.4 124 496-633 12-139 (192)
117 3t6q_A CD180 antigen; protein- 99.0 2.4E-10 8.2E-15 128.5 4.6 146 490-647 31-181 (606)
118 3j0a_A TOLL-like receptor 5; m 99.0 2.3E-10 7.8E-15 133.7 4.5 136 501-650 13-155 (844)
119 2wfh_A SLIT homolog 2 protein 99.0 6.3E-10 2.2E-14 105.3 6.6 98 543-648 31-131 (193)
120 1w8a_A SLIT protein; signaling 99.0 4E-10 1.4E-14 106.6 5.2 75 560-635 39-117 (192)
121 3v47_A TOLL-like receptor 5B a 99.0 7.7E-10 2.6E-14 119.7 8.1 142 490-642 28-177 (455)
122 1fnn_A CDC6P, cell division co 98.9 5.4E-09 1.9E-13 110.5 14.1 169 168-339 16-199 (389)
123 2z63_A TOLL-like receptor 4, v 98.9 6.1E-10 2.1E-14 124.2 6.7 126 539-672 392-525 (570)
124 3a79_B TLR6, VLRB.59, TOLL-lik 98.9 1.5E-09 5E-14 120.9 9.5 148 490-649 351-503 (562)
125 2qby_A CDC6 homolog 1, cell di 98.9 1.1E-09 3.7E-14 115.7 7.8 167 168-339 19-203 (386)
126 1ziw_A TOLL-like receptor 3; i 98.9 8.3E-10 2.8E-14 125.9 7.3 133 503-649 15-151 (680)
127 3g06_A SSPH2 (leucine-rich rep 98.9 1.3E-09 4.6E-14 121.5 8.6 130 491-645 60-206 (622)
128 2o6r_A Variable lymphocyte rec 98.9 9.6E-10 3.3E-14 102.4 6.3 125 498-636 13-140 (177)
129 1njg_A DNA polymerase III subu 98.9 3.8E-09 1.3E-13 103.5 10.8 158 169-339 23-191 (250)
130 2r9u_A Variable lymphocyte rec 98.9 2.2E-09 7.5E-14 99.6 7.6 111 518-643 15-128 (174)
131 3cvr_A Invasion plasmid antige 98.9 8.1E-10 2.8E-14 121.8 4.9 130 491-648 99-235 (571)
132 4ay9_X Follicle-stimulating ho 98.9 9.5E-10 3.2E-14 114.6 5.1 161 491-651 29-234 (350)
133 3g39_A Variable lymphocyte rec 98.9 2.9E-09 9.8E-14 98.5 7.6 107 516-637 10-119 (170)
134 2chg_A Replication factor C sm 98.9 1.5E-08 5E-13 97.8 12.7 148 169-339 17-167 (226)
135 1jl5_A Outer protein YOPM; leu 98.8 1.1E-09 3.6E-14 118.3 4.4 36 492-527 11-46 (454)
136 3g06_A SSPH2 (leucine-rich rep 98.8 3.7E-09 1.3E-13 118.0 8.9 122 490-636 79-217 (622)
137 2ca6_A RAN GTPase-activating p 98.8 9.9E-10 3.4E-14 116.1 3.5 127 515-649 159-309 (386)
138 2o6r_A Variable lymphocyte rec 98.8 7E-09 2.4E-13 96.5 8.0 100 542-649 27-130 (177)
139 2ca6_A RAN GTPase-activating p 98.8 1.1E-09 3.7E-14 115.8 2.7 137 492-636 159-319 (386)
140 2r9u_A Variable lymphocyte rec 98.8 4.3E-09 1.5E-13 97.6 5.7 110 497-620 17-128 (174)
141 3cvr_A Invasion plasmid antige 98.8 6.1E-09 2.1E-13 114.8 6.6 122 491-641 79-200 (571)
142 1jl5_A Outer protein YOPM; leu 98.7 5.9E-09 2E-13 112.4 5.9 133 492-649 111-243 (454)
143 1sxj_B Activator 1 37 kDa subu 98.7 4E-08 1.4E-12 100.9 9.9 148 169-339 21-172 (323)
144 3g39_A Variable lymphocyte rec 98.6 3.4E-08 1.2E-12 91.1 7.2 98 497-607 14-113 (170)
145 1hqc_A RUVB; extended AAA-ATPa 98.5 1E-07 3.5E-12 97.9 7.1 50 169-220 12-61 (324)
146 2ifg_A High affinity nerve gro 98.5 1.6E-07 5.4E-12 97.5 7.5 87 539-633 27-116 (347)
147 3goz_A Leucine-rich repeat-con 98.4 1.8E-07 6.2E-12 97.7 6.9 132 492-631 109-264 (362)
148 3te6_A Regulatory protein SIR3 98.4 5.6E-07 1.9E-11 90.8 10.2 114 169-286 20-142 (318)
149 1iqp_A RFCS; clamp loader, ext 98.4 5.5E-07 1.9E-11 92.4 10.0 148 169-339 25-175 (327)
150 3goz_A Leucine-rich repeat-con 98.4 3.1E-08 1.1E-12 103.6 0.5 150 492-649 80-259 (362)
151 4ay9_X Follicle-stimulating ho 98.4 2.5E-07 8.6E-12 96.1 6.3 145 491-649 103-252 (350)
152 1jbk_A CLPB protein; beta barr 98.3 1.5E-06 5.1E-11 81.3 10.1 45 169-220 22-66 (195)
153 1z7x_W Ribonuclease inhibitor; 98.3 1.1E-07 3.8E-12 102.8 2.1 133 491-634 27-184 (461)
154 1z7x_W Ribonuclease inhibitor; 98.3 2.1E-07 7.2E-12 100.5 3.3 134 492-633 256-411 (461)
155 2ifg_A High affinity nerve gro 98.3 5.7E-07 2E-11 93.2 6.1 96 503-611 20-117 (347)
156 3ogk_B Coronatine-insensitive 98.3 1.1E-07 3.7E-12 106.4 0.2 109 535-651 212-326 (592)
157 2p1m_B Transport inhibitor res 98.2 7.9E-08 2.7E-12 107.5 -2.6 149 491-648 104-270 (594)
158 1jr3_A DNA polymerase III subu 98.2 5.8E-06 2E-10 86.5 11.6 157 169-338 16-183 (373)
159 3ogk_B Coronatine-insensitive 98.2 3.7E-07 1.3E-11 102.0 1.6 150 494-650 140-300 (592)
160 2chq_A Replication factor C sm 98.1 5.3E-06 1.8E-10 84.6 9.3 143 169-337 17-165 (319)
161 3ec2_A DNA replication protein 98.0 5.5E-06 1.9E-10 76.9 6.6 120 175-315 20-142 (180)
162 2p65_A Hypothetical protein PF 98.0 6.9E-06 2.4E-10 76.3 6.3 45 169-220 22-66 (187)
163 3un9_A NLR family member X1; l 98.0 2.7E-06 9.3E-11 88.8 3.2 135 492-634 101-253 (372)
164 2z4s_A Chromosomal replication 97.9 2.8E-05 9.6E-10 82.9 9.7 102 197-315 130-236 (440)
165 3n70_A Transport activator; si 97.9 1.3E-05 4.4E-10 71.5 5.9 113 170-315 2-115 (145)
166 3un9_A NLR family member X1; l 97.9 1.2E-06 4.1E-11 91.5 -1.3 146 492-648 72-244 (372)
167 3sb4_A Hypothetical leucine ri 97.8 9.4E-06 3.2E-10 83.4 4.9 97 572-671 225-327 (329)
168 3bos_A Putative DNA replicatio 97.8 6.8E-06 2.3E-10 80.0 3.3 60 169-237 28-90 (242)
169 3pvs_A Replication-associated 97.8 6.5E-05 2.2E-09 80.0 10.9 138 169-337 26-169 (447)
170 3h4m_A Proteasome-activating n 97.8 6.5E-05 2.2E-09 75.2 10.1 53 168-220 16-74 (285)
171 2w58_A DNAI, primosome compone 97.8 2.4E-05 8.2E-10 74.0 6.0 125 170-315 26-158 (202)
172 3syl_A Protein CBBX; photosynt 97.7 7.3E-05 2.5E-09 75.8 9.5 51 170-220 32-90 (309)
173 1sxj_D Activator 1 41 kDa subu 97.7 5.1E-05 1.8E-09 78.5 8.5 156 169-337 37-196 (353)
174 2p1m_B Transport inhibitor res 97.7 2.8E-06 9.4E-11 94.9 -1.5 106 539-652 207-323 (594)
175 1sxj_E Activator 1 40 kDa subu 97.7 4.2E-05 1.4E-09 79.3 7.6 156 169-337 14-197 (354)
176 3u61_B DNA polymerase accessor 97.7 5.1E-05 1.7E-09 77.6 8.0 139 168-337 25-169 (324)
177 3co5_A Putative two-component 97.7 1.8E-05 6E-10 70.4 3.8 47 169-220 4-50 (143)
178 1io0_A Tropomodulin; LRR prote 97.7 2.4E-05 8.1E-10 72.9 4.6 115 511-633 32-164 (185)
179 3rw6_A Nuclear RNA export fact 97.7 3.3E-05 1.1E-09 75.9 5.7 84 535-626 162-257 (267)
180 1d2n_A N-ethylmaleimide-sensit 97.6 0.00021 7.3E-09 70.9 10.3 48 169-220 33-87 (272)
181 3uk6_A RUVB-like 2; hexameric 97.6 0.0001 3.6E-09 76.7 8.1 47 169-220 44-93 (368)
182 1l8q_A Chromosomal replication 97.6 0.00015 5E-09 74.2 9.0 122 197-337 37-170 (324)
183 3sb4_A Hypothetical leucine ri 97.5 0.00011 3.6E-09 75.4 7.3 101 539-649 222-327 (329)
184 3rw6_A Nuclear RNA export fact 97.5 2E-05 6.9E-10 77.5 1.6 84 570-655 167-263 (267)
185 2kjq_A DNAA-related protein; s 97.5 3.9E-05 1.3E-09 68.6 3.3 38 198-237 37-74 (149)
186 2gno_A DNA polymerase III, gam 97.5 0.00028 9.6E-09 71.1 9.9 140 173-338 1-144 (305)
187 1sxj_A Activator 1 95 kDa subu 97.5 0.0001 3.5E-09 80.4 7.2 160 169-338 39-214 (516)
188 1sxj_C Activator 1 40 kDa subu 97.5 0.00021 7.2E-09 73.5 8.9 146 169-337 25-173 (340)
189 3pfi_A Holliday junction ATP-d 97.5 0.00025 8.4E-09 72.9 8.8 51 168-220 28-78 (338)
190 2qz4_A Paraplegin; AAA+, SPG7, 97.4 0.00046 1.6E-08 67.9 10.0 52 169-220 6-62 (262)
191 2ra8_A Uncharacterized protein 97.4 0.00019 6.4E-09 74.3 6.5 138 490-633 170-320 (362)
192 1a5t_A Delta prime, HOLB; zinc 97.3 0.001 3.5E-08 68.1 11.4 137 175-337 8-171 (334)
193 1io0_A Tropomodulin; LRR prote 97.2 0.00013 4.5E-09 67.8 3.1 110 532-649 25-157 (185)
194 1qvr_A CLPB protein; coiled co 97.2 0.00048 1.6E-08 80.0 8.4 45 169-220 170-214 (854)
195 3eie_A Vacuolar protein sortin 97.2 0.00082 2.8E-08 68.4 9.2 52 169-220 18-74 (322)
196 4fcw_A Chaperone protein CLPB; 97.2 0.00027 9.4E-09 71.6 5.1 123 170-301 18-144 (311)
197 3pxg_A Negative regulator of g 97.1 0.00071 2.4E-08 72.7 8.1 45 169-220 180-224 (468)
198 3d8b_A Fidgetin-like protein 1 97.1 0.0011 3.7E-08 68.6 8.8 52 169-220 84-140 (357)
199 2bjv_A PSP operon transcriptio 97.1 0.00028 9.5E-09 69.8 4.0 47 169-220 6-52 (265)
200 1xwi_A SKD1 protein; VPS4B, AA 97.1 0.0029 9.9E-08 64.3 11.6 52 169-220 12-68 (322)
201 3vfd_A Spastin; ATPase, microt 97.1 0.0018 6.2E-08 67.8 10.4 53 168-220 114-171 (389)
202 3e4g_A ATP synthase subunit S, 97.0 0.0004 1.4E-08 63.3 4.0 85 515-610 61-153 (176)
203 2cvh_A DNA repair and recombin 97.0 0.0029 9.9E-08 60.2 10.0 84 197-286 20-115 (220)
204 3b9p_A CG5977-PA, isoform A; A 97.0 0.0025 8.5E-08 63.9 9.8 52 169-220 21-77 (297)
205 1ojl_A Transcriptional regulat 96.9 0.00034 1.2E-08 70.6 3.1 47 169-220 2-48 (304)
206 1ofh_A ATP-dependent HSL prote 96.9 0.0015 5.1E-08 65.9 7.9 52 169-220 15-73 (310)
207 2ra8_A Uncharacterized protein 96.9 0.00018 6.1E-09 74.5 1.0 126 511-650 168-314 (362)
208 2vhj_A Ntpase P4, P4; non- hyd 96.9 0.0003 1E-08 70.3 2.6 67 197-285 123-191 (331)
209 3cf0_A Transitional endoplasmi 96.9 0.0021 7.1E-08 64.7 8.8 52 169-220 15-72 (301)
210 2qgz_A Helicase loader, putati 96.9 0.00037 1.3E-08 70.4 3.3 54 176-235 135-189 (308)
211 2zan_A Vacuolar protein sortin 96.9 0.0031 1.1E-07 67.1 10.7 52 169-220 134-190 (444)
212 2qp9_X Vacuolar protein sortin 96.9 0.0014 4.6E-08 67.8 7.6 52 169-220 51-107 (355)
213 3hu3_A Transitional endoplasmi 96.9 0.0014 4.6E-08 70.6 7.3 52 169-220 204-261 (489)
214 3e4g_A ATP synthase subunit S, 96.9 0.00054 1.9E-08 62.4 3.4 81 543-630 61-149 (176)
215 4fdw_A Leucine rich hypothetic 96.8 0.0014 4.7E-08 68.9 6.6 65 569-636 267-338 (401)
216 1r6b_X CLPA protein; AAA+, N-t 96.7 0.007 2.4E-07 69.3 12.0 45 169-220 186-230 (758)
217 3pxi_A Negative regulator of g 96.7 0.00051 1.7E-08 78.7 2.3 125 169-314 491-628 (758)
218 3pxi_A Negative regulator of g 96.7 0.0021 7.2E-08 73.6 7.2 45 169-220 180-224 (758)
219 1lv7_A FTSH; alpha/beta domain 96.7 0.0034 1.2E-07 61.5 7.8 53 168-220 11-68 (257)
220 4fdw_A Leucine rich hypothetic 96.5 0.002 6.7E-08 67.7 5.2 97 571-671 224-329 (401)
221 2w0m_A SSO2452; RECA, SSPF, un 96.4 0.0044 1.5E-07 59.4 6.9 114 198-316 24-168 (235)
222 1n0w_A DNA repair protein RAD5 96.4 0.0069 2.4E-07 58.5 7.9 89 197-286 24-129 (243)
223 1v5w_A DMC1, meiotic recombina 96.4 0.017 5.9E-07 59.1 11.2 58 195-253 120-181 (343)
224 2pze_A Cystic fibrosis transme 96.3 0.026 8.9E-07 54.0 11.4 23 198-220 35-57 (229)
225 1rz3_A Hypothetical protein rb 96.2 0.0042 1.4E-07 58.3 5.2 42 174-219 3-44 (201)
226 3hr8_A Protein RECA; alpha and 96.2 0.0084 2.9E-07 61.3 7.7 83 196-285 60-148 (356)
227 2cbz_A Multidrug resistance-as 96.2 0.015 5E-07 56.1 8.9 24 197-220 31-54 (237)
228 2z43_A DNA repair and recombin 96.1 0.012 4.1E-07 59.7 8.5 88 197-285 107-212 (324)
229 2i1q_A DNA repair and recombin 96.1 0.0093 3.2E-07 60.5 7.7 88 197-285 98-213 (322)
230 1qvr_A CLPB protein; coiled co 96.1 0.0042 1.4E-07 72.0 5.3 52 169-220 558-611 (854)
231 4b4t_J 26S protease regulatory 96.1 0.01 3.6E-07 61.3 7.6 52 169-220 148-205 (405)
232 3m6a_A ATP-dependent protease 96.0 0.014 4.9E-07 63.7 9.1 51 169-220 81-131 (543)
233 2b8t_A Thymidine kinase; deoxy 96.0 0.0041 1.4E-07 59.2 4.1 112 197-316 12-126 (223)
234 4b4t_K 26S protease regulatory 96.0 0.011 3.7E-07 62.0 7.7 52 169-220 172-229 (428)
235 4b4t_M 26S protease regulatory 96.0 0.0056 1.9E-07 64.2 5.4 52 169-220 181-238 (434)
236 4b4t_L 26S protease subunit RP 96.0 0.012 4.1E-07 61.8 7.7 52 169-220 181-238 (437)
237 1xp8_A RECA protein, recombina 95.9 0.016 5.5E-07 59.6 8.3 82 197-285 74-161 (366)
238 2c9o_A RUVB-like 1; hexameric 95.9 0.0096 3.3E-07 63.7 6.7 47 169-220 37-86 (456)
239 3c8u_A Fructokinase; YP_612366 95.9 0.0064 2.2E-07 57.3 4.8 39 177-220 7-45 (208)
240 2px0_A Flagellar biosynthesis 95.8 0.014 4.9E-07 58.2 7.1 24 197-220 105-128 (296)
241 2ce7_A Cell division protein F 95.8 0.0093 3.2E-07 63.6 6.0 52 169-220 16-72 (476)
242 3io5_A Recombination and repai 95.8 0.024 8.3E-07 56.3 8.4 81 199-286 30-121 (333)
243 3cf2_A TER ATPase, transitiona 95.8 0.017 5.8E-07 65.4 8.2 97 169-285 204-306 (806)
244 4b4t_H 26S protease regulatory 95.7 0.02 6.8E-07 60.1 8.1 52 169-220 209-266 (467)
245 1u94_A RECA protein, recombina 95.7 0.013 4.3E-07 60.2 6.2 82 197-285 63-150 (356)
246 1g5t_A COB(I)alamin adenosyltr 95.6 0.0099 3.4E-07 54.8 4.8 115 198-316 29-163 (196)
247 1ypw_A Transitional endoplasmi 95.6 0.0073 2.5E-07 69.2 4.7 52 169-220 204-261 (806)
248 1r6b_X CLPA protein; AAA+, N-t 95.6 0.0081 2.8E-07 68.8 4.9 52 169-220 458-511 (758)
249 2zr9_A Protein RECA, recombina 95.6 0.024 8.3E-07 58.0 7.9 82 197-285 61-148 (349)
250 1in4_A RUVB, holliday junction 95.5 0.0063 2.2E-07 62.1 3.2 50 169-220 25-74 (334)
251 4b4t_I 26S protease regulatory 95.5 0.012 4.1E-07 61.1 5.1 52 169-220 182-239 (437)
252 3lw7_A Adenylate kinase relate 95.4 0.0071 2.4E-07 55.0 3.0 20 198-217 2-21 (179)
253 1zp6_A Hypothetical protein AT 95.4 0.0083 2.8E-07 55.6 3.4 24 197-220 9-32 (191)
254 3tqc_A Pantothenate kinase; bi 95.3 0.036 1.2E-06 55.8 7.8 45 172-219 70-114 (321)
255 2x8a_A Nuclear valosin-contain 95.2 0.027 9.2E-07 55.6 6.8 51 169-220 10-67 (274)
256 2dhr_A FTSH; AAA+ protein, hex 95.2 0.024 8.2E-07 60.8 6.8 53 168-220 30-87 (499)
257 3ice_A Transcription terminati 95.1 0.0079 2.7E-07 61.3 2.5 43 197-240 174-217 (422)
258 1qhx_A CPT, protein (chloramph 95.1 0.0094 3.2E-07 54.5 2.8 23 198-220 4-26 (178)
259 1kgd_A CASK, peripheral plasma 95.1 0.01 3.4E-07 54.6 3.0 24 197-220 5-28 (180)
260 2r44_A Uncharacterized protein 95.1 0.012 4E-07 60.0 3.8 43 169-220 27-69 (331)
261 1pzn_A RAD51, DNA repair and r 95.1 0.055 1.9E-06 55.4 8.8 89 196-285 130-240 (349)
262 3kb2_A SPBC2 prophage-derived 95.1 0.0097 3.3E-07 53.9 2.8 23 198-220 2-24 (173)
263 1odf_A YGR205W, hypothetical 3 95.0 0.022 7.6E-07 56.6 5.5 26 195-220 29-54 (290)
264 1ly1_A Polynucleotide kinase; 95.0 0.011 3.9E-07 53.9 3.1 22 198-219 3-24 (181)
265 3vaa_A Shikimate kinase, SK; s 95.0 0.0096 3.3E-07 55.7 2.6 24 197-220 25-48 (199)
266 2r62_A Cell division protease 95.0 0.011 3.7E-07 58.2 3.1 53 168-220 10-67 (268)
267 4gp7_A Metallophosphoesterase; 95.0 0.013 4.3E-07 53.4 3.2 23 197-219 9-31 (171)
268 3uie_A Adenylyl-sulfate kinase 95.0 0.014 4.7E-07 54.7 3.5 24 197-220 25-48 (200)
269 3lda_A DNA repair protein RAD5 95.0 0.054 1.8E-06 56.4 8.3 57 197-254 178-238 (400)
270 1sky_E F1-ATPase, F1-ATP synth 94.9 0.05 1.7E-06 57.3 7.9 49 199-249 153-203 (473)
271 3nbx_X ATPase RAVA; AAA+ ATPas 94.9 0.016 5.4E-07 62.2 4.3 43 169-220 22-64 (500)
272 1kag_A SKI, shikimate kinase I 94.9 0.011 3.6E-07 53.8 2.5 23 198-220 5-27 (173)
273 3tr0_A Guanylate kinase, GMP k 94.8 0.013 4.5E-07 54.8 3.1 23 198-220 8-30 (205)
274 3asz_A Uridine kinase; cytidin 94.8 0.015 5E-07 54.9 3.4 25 196-220 5-29 (211)
275 2bdt_A BH3686; alpha-beta prot 94.8 0.016 5.3E-07 53.6 3.4 22 198-219 3-24 (189)
276 1knq_A Gluconate kinase; ALFA/ 94.8 0.016 5.4E-07 52.8 3.3 23 197-219 8-30 (175)
277 1ye8_A Protein THEP1, hypothet 94.8 0.015 5.1E-07 53.3 3.1 22 199-220 2-23 (178)
278 2qt1_A Nicotinamide riboside k 94.7 0.018 6.1E-07 54.1 3.6 25 196-220 20-44 (207)
279 2ga8_A Hypothetical 39.9 kDa p 94.7 0.025 8.6E-07 57.3 4.8 46 172-220 2-47 (359)
280 3a00_A Guanylate kinase, GMP k 94.7 0.012 4E-07 54.5 2.1 23 198-220 2-24 (186)
281 3trf_A Shikimate kinase, SK; a 94.6 0.013 4.5E-07 53.9 2.5 24 197-220 5-28 (185)
282 3hws_A ATP-dependent CLP prote 94.6 0.02 6.9E-07 59.1 4.1 51 170-220 16-74 (363)
283 4eun_A Thermoresistant glucoki 94.6 0.016 5.6E-07 54.1 3.1 24 197-220 29-52 (200)
284 1ixz_A ATP-dependent metallopr 94.6 0.022 7.4E-07 55.5 4.1 51 169-220 16-72 (254)
285 2rhm_A Putative kinase; P-loop 94.6 0.018 6.2E-07 53.2 3.4 24 197-220 5-28 (193)
286 3tau_A Guanylate kinase, GMP k 94.6 0.016 5.6E-07 54.5 3.0 24 197-220 8-31 (208)
287 1nks_A Adenylate kinase; therm 94.6 0.016 5.6E-07 53.5 3.0 23 198-220 2-24 (194)
288 1gvn_B Zeta; postsegregational 94.6 0.029 9.8E-07 55.8 4.9 25 195-219 31-55 (287)
289 1fx0_B ATP synthase beta chain 94.5 0.079 2.7E-06 55.9 8.2 87 198-285 166-275 (498)
290 3t61_A Gluconokinase; PSI-biol 94.5 0.014 4.6E-07 54.7 2.2 24 197-220 18-41 (202)
291 1jjv_A Dephospho-COA kinase; P 94.5 0.02 6.9E-07 53.7 3.4 22 198-219 3-24 (206)
292 3tif_A Uncharacterized ABC tra 94.5 0.028 9.5E-07 54.0 4.4 34 197-233 31-64 (235)
293 1uf9_A TT1252 protein; P-loop, 94.5 0.019 6.6E-07 53.5 3.2 26 195-220 6-31 (203)
294 2j41_A Guanylate kinase; GMP, 94.4 0.018 6.2E-07 53.9 3.0 24 197-220 6-29 (207)
295 3aez_A Pantothenate kinase; tr 94.4 0.021 7.2E-07 57.4 3.6 26 195-220 88-113 (312)
296 2if2_A Dephospho-COA kinase; a 94.4 0.017 5.9E-07 54.1 2.8 21 199-219 3-23 (204)
297 1vma_A Cell division protein F 94.4 0.09 3.1E-06 52.5 8.2 87 196-285 103-195 (306)
298 2pcj_A ABC transporter, lipopr 94.4 0.029 9.9E-07 53.5 4.4 23 198-220 31-53 (224)
299 1kht_A Adenylate kinase; phosp 94.4 0.018 6.2E-07 53.1 2.8 23 198-220 4-26 (192)
300 1lvg_A Guanylate kinase, GMP k 94.4 0.015 5.1E-07 54.3 2.2 22 198-219 5-26 (198)
301 3gfo_A Cobalt import ATP-bindi 94.4 0.03 1E-06 55.1 4.4 33 198-233 35-67 (275)
302 2p5t_B PEZT; postsegregational 94.4 0.028 9.5E-07 54.8 4.2 41 178-220 15-55 (253)
303 1cke_A CK, MSSA, protein (cyti 94.4 0.018 6.3E-07 54.9 2.8 22 198-219 6-27 (227)
304 1ex7_A Guanylate kinase; subst 94.4 0.014 4.9E-07 53.7 2.0 23 198-220 2-24 (186)
305 2jaq_A Deoxyguanosine kinase; 94.3 0.019 6.3E-07 53.7 2.8 22 199-220 2-23 (205)
306 1uj2_A Uridine-cytidine kinase 94.3 0.021 7E-07 55.7 3.2 25 195-219 20-44 (252)
307 2ze6_A Isopentenyl transferase 94.3 0.02 6.9E-07 55.7 3.1 23 198-220 2-24 (253)
308 2onk_A Molybdate/tungstate ABC 94.3 0.029 1E-06 54.0 4.1 33 198-233 25-57 (240)
309 1g8p_A Magnesium-chelatase 38 94.3 0.015 5.2E-07 59.6 2.3 45 169-220 24-68 (350)
310 2ffh_A Protein (FFH); SRP54, s 94.3 0.11 3.7E-06 54.4 8.7 24 197-220 98-121 (425)
311 1htw_A HI0065; nucleotide-bind 94.3 0.027 9.2E-07 50.4 3.6 24 197-220 33-56 (158)
312 1znw_A Guanylate kinase, GMP k 94.3 0.022 7.4E-07 53.6 3.1 24 197-220 20-43 (207)
313 1ukz_A Uridylate kinase; trans 94.3 0.024 8.2E-07 53.0 3.4 26 195-220 13-38 (203)
314 2qor_A Guanylate kinase; phosp 94.2 0.015 5.3E-07 54.5 2.0 25 196-220 11-35 (204)
315 1b0u_A Histidine permease; ABC 94.2 0.033 1.1E-06 54.5 4.4 34 197-233 32-65 (262)
316 4a1f_A DNAB helicase, replicat 94.2 0.088 3E-06 53.3 7.6 52 197-252 46-97 (338)
317 1tev_A UMP-CMP kinase; ploop, 94.2 0.023 7.7E-07 52.6 3.0 24 197-220 3-26 (196)
318 2jeo_A Uridine-cytidine kinase 94.2 0.026 8.7E-07 54.7 3.5 23 197-219 25-47 (245)
319 1iy2_A ATP-dependent metallopr 94.2 0.027 9.3E-07 55.7 3.8 52 168-220 39-96 (278)
320 3iij_A Coilin-interacting nucl 94.2 0.016 5.4E-07 53.1 1.9 24 197-220 11-34 (180)
321 1y63_A LMAJ004144AAA protein; 94.2 0.021 7.1E-07 52.6 2.7 23 197-219 10-32 (184)
322 4g1u_C Hemin import ATP-bindin 94.2 0.038 1.3E-06 54.2 4.6 33 198-233 38-70 (266)
323 1zuh_A Shikimate kinase; alpha 94.1 0.022 7.7E-07 51.4 2.8 24 197-220 7-30 (168)
324 3kl4_A SRP54, signal recogniti 94.1 0.17 5.8E-06 53.0 9.8 25 196-220 96-120 (433)
325 2yvu_A Probable adenylyl-sulfa 94.1 0.027 9.1E-07 51.9 3.3 25 196-220 12-36 (186)
326 2bbw_A Adenylate kinase 4, AK4 94.1 0.024 8.1E-07 55.0 3.1 23 197-219 27-49 (246)
327 3fwy_A Light-independent proto 94.1 0.026 8.8E-07 56.8 3.4 25 195-219 46-70 (314)
328 1via_A Shikimate kinase; struc 94.1 0.019 6.5E-07 52.3 2.2 22 199-220 6-27 (175)
329 3cm0_A Adenylate kinase; ATP-b 94.1 0.028 9.6E-07 51.6 3.3 23 197-219 4-26 (186)
330 1ji0_A ABC transporter; ATP bi 94.0 0.039 1.3E-06 53.2 4.4 33 198-233 33-65 (240)
331 1sgw_A Putative ABC transporte 94.0 0.033 1.1E-06 52.6 3.8 23 198-220 36-58 (214)
332 2pt7_A CAG-ALFA; ATPase, prote 94.0 0.051 1.8E-06 55.1 5.5 108 198-320 172-279 (330)
333 1xjc_A MOBB protein homolog; s 94.0 0.025 8.4E-07 51.1 2.7 24 197-220 4-27 (169)
334 2c95_A Adenylate kinase 1; tra 94.0 0.022 7.6E-07 52.8 2.6 24 197-220 9-32 (196)
335 2olj_A Amino acid ABC transpor 94.0 0.039 1.3E-06 53.9 4.4 34 197-233 50-83 (263)
336 2ff7_A Alpha-hemolysin translo 94.0 0.04 1.4E-06 53.3 4.4 33 198-233 36-68 (247)
337 1g6h_A High-affinity branched- 94.0 0.04 1.4E-06 53.7 4.4 33 198-233 34-66 (257)
338 1vpl_A ABC transporter, ATP-bi 94.0 0.041 1.4E-06 53.5 4.4 24 197-220 41-64 (256)
339 3ney_A 55 kDa erythrocyte memb 93.9 0.024 8.1E-07 52.7 2.5 25 196-220 18-42 (197)
340 2hf9_A Probable hydrogenase ni 93.9 0.042 1.4E-06 52.2 4.4 25 196-220 37-61 (226)
341 1mv5_A LMRA, multidrug resista 93.9 0.042 1.4E-06 53.1 4.4 24 197-220 28-51 (243)
342 1z6g_A Guanylate kinase; struc 93.9 0.023 8E-07 53.9 2.5 24 197-220 23-46 (218)
343 3a4m_A L-seryl-tRNA(SEC) kinas 93.9 0.028 9.6E-07 55.0 3.2 24 197-220 4-27 (260)
344 4a74_A DNA repair and recombin 93.9 0.087 3E-06 50.0 6.6 45 197-241 25-73 (231)
345 2ixe_A Antigen peptide transpo 93.9 0.042 1.5E-06 54.0 4.4 24 197-220 45-68 (271)
346 3l0o_A Transcription terminati 93.9 0.16 5.4E-06 51.8 8.5 54 179-239 163-217 (427)
347 4e22_A Cytidylate kinase; P-lo 93.9 0.029 9.8E-07 54.6 3.1 23 197-219 27-49 (252)
348 2yhs_A FTSY, cell division pro 93.9 0.15 5.2E-06 54.0 8.8 42 196-240 292-333 (503)
349 3t15_A Ribulose bisphosphate c 93.9 0.024 8.1E-07 56.6 2.6 25 196-220 35-59 (293)
350 3bh0_A DNAB-like replicative h 93.8 0.29 1E-05 49.1 10.7 52 197-252 68-119 (315)
351 2iyv_A Shikimate kinase, SK; t 93.8 0.021 7.2E-07 52.4 2.0 22 199-220 4-25 (184)
352 1qf9_A UMP/CMP kinase, protein 93.8 0.029 1E-06 51.7 3.0 24 197-220 6-29 (194)
353 2bwj_A Adenylate kinase 5; pho 93.8 0.027 9.4E-07 52.3 2.8 23 198-220 13-35 (199)
354 2grj_A Dephospho-COA kinase; T 93.8 0.031 1.1E-06 51.8 3.1 24 196-219 11-34 (192)
355 2plr_A DTMP kinase, probable t 93.8 0.03 1E-06 52.6 3.1 23 198-220 5-27 (213)
356 2pt5_A Shikimate kinase, SK; a 93.8 0.029 9.8E-07 50.6 2.8 22 199-220 2-23 (168)
357 2orw_A Thymidine kinase; TMTK, 93.8 0.0048 1.7E-07 57.0 -2.5 22 198-219 4-25 (184)
358 2pez_A Bifunctional 3'-phospho 93.8 0.032 1.1E-06 50.9 3.2 24 197-220 5-28 (179)
359 2yz2_A Putative ABC transporte 93.8 0.046 1.6E-06 53.6 4.4 34 197-233 33-66 (266)
360 1s96_A Guanylate kinase, GMP k 93.7 0.029 9.9E-07 53.2 2.8 25 196-220 15-39 (219)
361 1ls1_A Signal recognition part 93.7 0.18 6E-06 50.2 8.7 24 197-220 98-121 (295)
362 2wsm_A Hydrogenase expression/ 93.7 0.042 1.4E-06 52.0 3.9 25 196-220 29-53 (221)
363 1e6c_A Shikimate kinase; phosp 93.7 0.026 8.7E-07 51.2 2.2 23 198-220 3-25 (173)
364 2pbr_A DTMP kinase, thymidylat 93.7 0.03 1E-06 51.7 2.8 22 199-220 2-23 (195)
365 3umf_A Adenylate kinase; rossm 93.7 0.036 1.2E-06 52.4 3.3 26 195-220 27-52 (217)
366 2i3b_A HCR-ntpase, human cance 93.6 0.028 9.7E-07 51.9 2.5 22 199-220 3-24 (189)
367 2cdn_A Adenylate kinase; phosp 93.6 0.031 1.1E-06 52.1 2.8 24 197-220 20-43 (201)
368 2ck3_D ATP synthase subunit be 93.6 0.27 9.1E-06 51.7 10.0 53 198-251 154-207 (482)
369 1rj9_A FTSY, signal recognitio 93.6 0.03 1E-06 56.0 2.8 25 196-220 101-125 (304)
370 2ihy_A ABC transporter, ATP-bi 93.6 0.052 1.8E-06 53.6 4.4 33 198-233 48-80 (279)
371 3rfe_A Platelet glycoprotein I 93.6 0.066 2.3E-06 46.0 4.5 46 560-607 18-66 (130)
372 1j8m_F SRP54, signal recogniti 93.5 0.17 5.9E-06 50.3 8.2 87 197-285 98-189 (297)
373 2vli_A Antibiotic resistance p 93.5 0.025 8.6E-07 51.8 1.9 24 197-220 5-28 (183)
374 3dm5_A SRP54, signal recogniti 93.5 0.2 6.7E-06 52.6 8.9 24 196-219 99-122 (443)
375 2f6r_A COA synthase, bifunctio 93.5 0.041 1.4E-06 54.5 3.5 24 196-219 74-97 (281)
376 3tlx_A Adenylate kinase 2; str 93.5 0.051 1.7E-06 52.5 4.1 25 196-220 28-52 (243)
377 3b9q_A Chloroplast SRP recepto 93.5 0.042 1.4E-06 55.0 3.5 25 196-220 99-123 (302)
378 1um8_A ATP-dependent CLP prote 93.4 0.057 1.9E-06 56.0 4.7 23 198-220 73-95 (376)
379 2ehv_A Hypothetical protein PH 93.4 0.037 1.3E-06 53.5 3.1 39 197-236 30-68 (251)
380 3b85_A Phosphate starvation-in 93.4 0.031 1.1E-06 52.5 2.5 23 198-220 23-45 (208)
381 2f1r_A Molybdopterin-guanine d 93.4 0.023 7.9E-07 51.5 1.5 23 198-220 3-25 (171)
382 1sq5_A Pantothenate kinase; P- 93.4 0.043 1.5E-06 55.1 3.5 24 196-219 79-102 (308)
383 1nn5_A Similar to deoxythymidy 93.3 0.035 1.2E-06 52.2 2.7 24 197-220 9-32 (215)
384 2z0h_A DTMP kinase, thymidylat 93.3 0.038 1.3E-06 51.2 2.8 22 199-220 2-23 (197)
385 2xxa_A Signal recognition part 93.3 0.19 6.4E-06 52.9 8.3 25 196-220 99-123 (433)
386 2qi9_C Vitamin B12 import ATP- 93.3 0.061 2.1E-06 52.1 4.3 23 198-220 27-49 (249)
387 3lnc_A Guanylate kinase, GMP k 93.3 0.029 9.8E-07 53.7 1.9 23 198-220 28-51 (231)
388 2wwf_A Thymidilate kinase, put 93.2 0.039 1.3E-06 51.8 2.8 24 197-220 10-33 (212)
389 1vht_A Dephospho-COA kinase; s 93.2 0.05 1.7E-06 51.5 3.5 23 197-219 4-26 (218)
390 1jr3_D DNA polymerase III, del 93.2 0.41 1.4E-05 48.6 10.7 119 197-337 18-146 (343)
391 1m7g_A Adenylylsulfate kinase; 93.2 0.047 1.6E-06 51.4 3.3 24 197-220 25-48 (211)
392 1gtv_A TMK, thymidylate kinase 93.2 0.023 8E-07 53.5 1.1 22 199-220 2-23 (214)
393 3rfe_A Platelet glycoprotein I 93.1 0.089 3.1E-06 45.2 4.7 54 576-632 11-67 (130)
394 2d2e_A SUFC protein; ABC-ATPas 93.1 0.046 1.6E-06 53.0 3.1 23 198-220 30-52 (250)
395 3fb4_A Adenylate kinase; psych 93.1 0.043 1.5E-06 51.8 2.8 22 199-220 2-23 (216)
396 1zd8_A GTP:AMP phosphotransfer 93.0 0.042 1.4E-06 52.4 2.8 24 197-220 7-30 (227)
397 3nh6_A ATP-binding cassette SU 93.0 0.058 2E-06 53.9 3.8 24 197-220 80-103 (306)
398 3p32_A Probable GTPase RV1496/ 93.0 0.087 3E-06 54.1 5.3 25 195-219 77-101 (355)
399 1q57_A DNA primase/helicase; d 93.0 0.22 7.4E-06 53.8 8.7 52 197-252 242-294 (503)
400 2v54_A DTMP kinase, thymidylat 93.0 0.046 1.6E-06 51.0 2.8 23 198-220 5-27 (204)
401 2zu0_C Probable ATP-dependent 93.0 0.049 1.7E-06 53.4 3.1 24 197-220 46-69 (267)
402 1aky_A Adenylate kinase; ATP:A 92.9 0.045 1.6E-06 51.9 2.8 23 198-220 5-27 (220)
403 3e70_C DPA, signal recognition 92.9 0.057 1.9E-06 54.6 3.6 25 196-220 128-152 (328)
404 3dl0_A Adenylate kinase; phosp 92.9 0.047 1.6E-06 51.5 2.8 21 199-219 2-22 (216)
405 2ghi_A Transport protein; mult 92.9 0.051 1.7E-06 53.1 3.1 23 198-220 47-69 (260)
406 3be4_A Adenylate kinase; malar 92.9 0.04 1.4E-06 52.2 2.3 24 197-220 5-28 (217)
407 2pjz_A Hypothetical protein ST 92.8 0.077 2.6E-06 51.8 4.3 32 198-233 31-62 (263)
408 3nwj_A ATSK2; P loop, shikimat 92.8 0.04 1.4E-06 53.3 2.2 23 198-220 49-71 (250)
409 2og2_A Putative signal recogni 92.8 0.058 2E-06 55.2 3.5 25 196-220 156-180 (359)
410 3ake_A Cytidylate kinase; CMP 92.8 0.05 1.7E-06 50.8 2.8 21 199-219 4-24 (208)
411 2nq2_C Hypothetical ABC transp 92.7 0.054 1.8E-06 52.6 3.0 23 198-220 32-54 (253)
412 3d3q_A TRNA delta(2)-isopenten 92.7 0.053 1.8E-06 54.7 3.1 23 198-220 8-30 (340)
413 1np6_A Molybdopterin-guanine d 92.7 0.053 1.8E-06 49.3 2.7 24 197-220 6-29 (174)
414 1zak_A Adenylate kinase; ATP:A 92.6 0.042 1.4E-06 52.2 2.0 24 197-220 5-28 (222)
415 3upu_A ATP-dependent DNA helic 92.6 0.065 2.2E-06 57.2 3.7 22 199-220 47-68 (459)
416 2j37_W Signal recognition part 92.5 0.58 2E-05 50.0 10.8 25 195-219 99-123 (504)
417 2r9v_A ATP synthase subunit al 92.4 0.31 1.1E-05 51.5 8.5 84 198-285 176-276 (515)
418 3r20_A Cytidylate kinase; stru 92.4 0.067 2.3E-06 51.1 3.1 24 197-220 9-32 (233)
419 3fvq_A Fe(3+) IONS import ATP- 92.4 0.094 3.2E-06 53.5 4.4 23 198-220 31-53 (359)
420 3vr4_D V-type sodium ATPase su 92.4 0.12 4.1E-06 54.0 5.2 86 198-285 152-257 (465)
421 3mfy_A V-type ATP synthase alp 92.4 0.18 6E-06 53.8 6.5 47 198-248 228-275 (588)
422 2eyu_A Twitching motility prot 92.3 0.071 2.4E-06 52.0 3.3 110 197-320 25-137 (261)
423 2vp4_A Deoxynucleoside kinase; 92.3 0.062 2.1E-06 51.4 2.9 25 196-220 19-43 (230)
424 3tui_C Methionine import ATP-b 92.3 0.1 3.4E-06 53.4 4.4 24 197-220 54-77 (366)
425 2bbs_A Cystic fibrosis transme 92.3 0.074 2.5E-06 52.8 3.4 24 197-220 64-87 (290)
426 2wji_A Ferrous iron transport 92.2 0.097 3.3E-06 46.8 3.9 23 198-220 4-26 (165)
427 1oix_A RAS-related protein RAB 92.2 0.071 2.4E-06 49.2 3.0 24 197-220 29-52 (191)
428 3k1j_A LON protease, ATP-depen 92.2 0.079 2.7E-06 58.7 3.9 43 169-220 41-83 (604)
429 2r6a_A DNAB helicase, replicat 92.2 0.27 9.3E-06 52.2 7.9 50 197-249 203-252 (454)
430 2zej_A Dardarin, leucine-rich 92.1 0.072 2.5E-06 48.7 3.0 22 199-220 4-25 (184)
431 2xb4_A Adenylate kinase; ATP-b 92.1 0.067 2.3E-06 50.8 2.8 22 199-220 2-23 (223)
432 3a8t_A Adenylate isopentenyltr 92.1 0.091 3.1E-06 52.9 3.8 24 197-220 40-63 (339)
433 2v9p_A Replication protein E1; 92.1 0.072 2.5E-06 53.1 3.1 24 197-220 126-149 (305)
434 1e4v_A Adenylate kinase; trans 92.1 0.068 2.3E-06 50.4 2.8 22 199-220 2-23 (214)
435 1zu4_A FTSY; GTPase, signal re 92.0 0.088 3E-06 53.0 3.6 25 196-220 104-128 (320)
436 2qe7_A ATP synthase subunit al 92.0 0.31 1.1E-05 51.5 7.8 84 198-285 163-263 (502)
437 2q6t_A DNAB replication FORK h 91.9 0.4 1.4E-05 50.8 8.9 53 197-252 200-252 (444)
438 3crm_A TRNA delta(2)-isopenten 91.9 0.077 2.6E-06 53.2 3.0 23 198-220 6-28 (323)
439 1yrb_A ATP(GTP)binding protein 91.9 0.089 3E-06 51.2 3.4 25 195-219 12-36 (262)
440 1z47_A CYSA, putative ABC-tran 91.8 0.12 4.1E-06 52.7 4.4 23 198-220 42-64 (355)
441 1tue_A Replication protein E1; 91.8 0.086 2.9E-06 48.9 3.0 37 178-220 45-81 (212)
442 3exa_A TRNA delta(2)-isopenten 91.8 0.086 3E-06 52.4 3.2 24 197-220 3-26 (322)
443 3oaa_A ATP synthase subunit al 91.8 0.42 1.4E-05 50.4 8.5 82 198-285 163-263 (513)
444 3hjn_A DTMP kinase, thymidylat 91.7 0.23 7.8E-06 46.1 5.9 49 199-249 2-50 (197)
445 3d31_A Sulfate/molybdate ABC t 91.7 0.11 3.6E-06 53.0 3.9 23 198-220 27-49 (348)
446 1g41_A Heat shock protein HSLU 91.7 0.081 2.8E-06 55.5 3.1 52 169-220 15-73 (444)
447 1a7j_A Phosphoribulokinase; tr 91.7 0.043 1.5E-06 54.6 0.9 23 197-219 5-27 (290)
448 3sr0_A Adenylate kinase; phosp 91.7 0.083 2.8E-06 49.5 2.8 22 199-220 2-23 (206)
449 2yyz_A Sugar ABC transporter, 91.7 0.13 4.4E-06 52.6 4.4 34 197-233 29-62 (359)
450 3sop_A Neuronal-specific septi 91.7 0.084 2.9E-06 51.8 3.0 22 199-220 4-25 (270)
451 1ltq_A Polynucleotide kinase; 91.7 0.084 2.9E-06 52.7 3.1 22 198-219 3-24 (301)
452 3kta_A Chromosome segregation 91.7 0.09 3.1E-06 48.0 3.1 21 199-219 28-48 (182)
453 2ged_A SR-beta, signal recogni 91.6 0.13 4.6E-06 47.1 4.3 25 196-220 47-71 (193)
454 1ak2_A Adenylate kinase isoenz 91.6 0.082 2.8E-06 50.6 2.8 24 197-220 16-39 (233)
455 2it1_A 362AA long hypothetical 91.6 0.13 4.5E-06 52.6 4.4 24 197-220 29-52 (362)
456 1g29_1 MALK, maltose transport 91.6 0.13 4.5E-06 52.8 4.4 23 198-220 30-52 (372)
457 1nij_A Hypothetical protein YJ 91.6 0.089 3E-06 53.1 3.1 25 196-220 3-27 (318)
458 1v43_A Sugar-binding transport 91.6 0.13 4.5E-06 52.8 4.4 24 197-220 37-60 (372)
459 3rlf_A Maltose/maltodextrin im 91.6 0.13 4.6E-06 52.8 4.4 23 198-220 30-52 (381)
460 2dyk_A GTP-binding protein; GT 91.5 0.1 3.5E-06 46.1 3.2 23 198-220 2-24 (161)
461 3vr4_A V-type sodium ATPase ca 91.5 0.22 7.5E-06 53.3 6.1 46 198-247 233-279 (600)
462 2f9l_A RAB11B, member RAS onco 91.5 0.1 3.6E-06 48.3 3.4 24 197-220 5-28 (199)
463 2ck3_A ATP synthase subunit al 91.5 0.31 1.1E-05 51.6 7.1 88 198-285 163-271 (510)
464 2wjg_A FEOB, ferrous iron tran 91.4 0.12 4.2E-06 47.1 3.7 25 196-220 6-30 (188)
465 3cmu_A Protein RECA, recombina 91.4 0.24 8.3E-06 61.2 7.2 81 198-285 1428-1514(2050)
466 1q3t_A Cytidylate kinase; nucl 91.3 0.089 3E-06 50.5 2.7 25 195-219 14-38 (236)
467 1nlf_A Regulatory protein REPA 91.3 0.098 3.4E-06 51.6 3.1 22 198-219 31-52 (279)
468 1cr0_A DNA primase/helicase; R 91.2 0.099 3.4E-06 52.1 3.1 51 197-251 35-86 (296)
469 3zvl_A Bifunctional polynucleo 91.1 0.1 3.4E-06 54.9 3.1 25 196-220 257-281 (416)
470 1tq4_A IIGP1, interferon-induc 91.1 0.11 3.7E-06 54.2 3.2 25 196-220 68-92 (413)
471 3foz_A TRNA delta(2)-isopenten 91.1 0.12 4.1E-06 51.2 3.4 24 197-220 10-33 (316)
472 1oxx_K GLCV, glucose, ABC tran 91.1 0.11 3.7E-06 53.1 3.2 23 198-220 32-54 (353)
473 3gqb_B V-type ATP synthase bet 91.1 0.2 6.9E-06 52.3 5.2 88 198-285 148-260 (464)
474 2dr3_A UPF0273 protein PH0284; 91.0 0.13 4.4E-06 49.4 3.6 39 197-237 23-61 (247)
475 1svm_A Large T antigen; AAA+ f 90.9 0.16 5.6E-06 52.2 4.4 23 197-219 169-191 (377)
476 2ce2_X GTPase HRAS; signaling 90.9 0.1 3.6E-06 46.1 2.6 22 199-220 5-26 (166)
477 1fx0_A ATP synthase alpha chai 90.9 0.21 7.3E-06 52.8 5.3 82 198-285 164-264 (507)
478 3e1s_A Exodeoxyribonuclease V, 90.9 0.17 5.8E-06 55.4 4.7 23 198-220 205-227 (574)
479 4eaq_A DTMP kinase, thymidylat 90.8 0.13 4.4E-06 49.1 3.3 25 196-220 25-49 (229)
480 3thx_A DNA mismatch repair pro 90.8 0.29 1E-05 56.4 6.8 21 197-217 662-682 (934)
481 2gj8_A MNME, tRNA modification 90.8 0.12 4.2E-06 46.6 3.0 23 198-220 5-27 (172)
482 1z2a_A RAS-related protein RAB 90.7 0.15 5.2E-06 45.3 3.5 24 197-220 5-28 (168)
483 2qmh_A HPR kinase/phosphorylas 90.7 0.14 5E-06 47.1 3.3 23 198-220 35-57 (205)
484 2ocp_A DGK, deoxyguanosine kin 90.7 0.13 4.3E-06 49.5 3.1 24 197-220 2-25 (241)
485 3end_A Light-independent proto 90.7 0.14 4.6E-06 51.4 3.4 41 195-237 39-79 (307)
486 3q72_A GTP-binding protein RAD 90.6 0.13 4.4E-06 45.8 2.9 22 199-220 4-25 (166)
487 3f9v_A Minichromosome maintena 90.6 0.1 3.5E-06 57.5 2.7 22 199-220 329-350 (595)
488 2lkc_A Translation initiation 90.6 0.16 5.6E-06 45.7 3.7 25 196-220 7-31 (178)
489 2nzj_A GTP-binding protein REM 90.5 0.19 6.6E-06 45.0 4.1 24 197-220 4-27 (175)
490 3llm_A ATP-dependent RNA helic 90.5 0.7 2.4E-05 44.0 8.3 89 198-287 77-187 (235)
491 1lw7_A Transcriptional regulat 90.5 0.14 4.7E-06 52.8 3.4 24 197-220 170-193 (365)
492 2qm8_A GTPase/ATPase; G protei 90.5 0.22 7.5E-06 50.6 4.8 24 196-219 54-77 (337)
493 3con_A GTPase NRAS; structural 90.5 0.12 4.2E-06 47.3 2.7 23 198-220 22-44 (190)
494 3bgw_A DNAB-like replicative h 90.4 0.59 2E-05 49.3 8.2 51 197-251 197-247 (444)
495 1fzq_A ADP-ribosylation factor 90.4 0.18 6.1E-06 45.9 3.7 24 197-220 16-39 (181)
496 3gqb_A V-type ATP synthase alp 90.3 0.21 7E-06 53.3 4.5 38 198-239 222-259 (578)
497 3ld9_A DTMP kinase, thymidylat 90.3 0.29 1E-05 46.3 5.2 25 196-220 20-44 (223)
498 3cf2_A TER ATPase, transitiona 90.3 0.27 9.1E-06 55.7 5.7 97 169-285 477-579 (806)
499 2erx_A GTP-binding protein DI- 90.3 0.14 4.9E-06 45.6 3.0 23 198-220 4-26 (172)
500 3q85_A GTP-binding protein REM 90.2 0.2 6.9E-06 44.6 3.9 22 198-219 3-24 (169)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=3.2e-43 Score=390.70 Aligned_cols=282 Identities=20% Similarity=0.240 Sum_probs=225.7
Q ss_pred eechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhc--CccccccCCeEEEEEcCCcc--cHHHHHHH
Q 005860 172 RGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYN--DSDVFEYFDKRMWVCVSDPF--DELRIAKA 247 (673)
Q Consensus 172 vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~~~~~ 247 (673)
|||+.++++|.++|.... ...+++|+|+||||+||||||+++|+ +.+++.+|++++||++++.+ ++..++..
T Consensus 131 ~GR~~~~~~l~~~L~~~~----~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC----DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT----TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc----CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHH
Confidence 599999999999997653 24589999999999999999999998 66899999999999999985 89999999
Q ss_pred HHHHhhCCCC-------CcCcHHHHHHHHHHHhCCC-eEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCChhHH
Q 005860 248 IIEALEGFVP-------TVGELNSLLESIRASLVGK-KFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKETVA 319 (673)
Q Consensus 248 i~~~l~~~~~-------~~~~~~~~~~~l~~~l~~k-r~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 319 (673)
|+.+++.... +..+.+.+...+++.|+++ ||||||||||+.+...|.. .+||+||||||++.++
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~ 278 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEIS 278 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGG
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHH
Confidence 9999986521 1234566789999999996 9999999999753222332 2799999999999999
Q ss_pred Hhcc-ccceeecCCCCccccc--------------------------cCCchhhHHHHhhhhccCCCHHHHHHHHhhhcc
Q 005860 320 RMME-SIHVISIKELSEQECW--------------------------CKGLPLAAKTIGSLLRFKRTREEWESILDSELW 372 (673)
Q Consensus 320 ~~~~-~~~~~~l~~L~~~~~~--------------------------c~GlPLai~~~~~~L~~~~~~~~w~~~l~~~~~ 372 (673)
..++ ...+|+|++|+++++| |+|+||||+++|+.|+.+ . .+|...+....+
T Consensus 279 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~l~ 356 (549)
T 2a5y_B 279 NAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNKLE 356 (549)
T ss_dssp GGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHHHH
T ss_pred HHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHHhh
Confidence 9876 4578999999999998 999999999999999765 3 233344443333
Q ss_pred cchhhhhccchhhhhcccCCChhhhhhhc-----------hHHH--------HHHHHHc--CCCCCCC-CCcHHHHHHHH
Q 005860 373 QLEEFEKGLLAPLLLSYNDLPPMIKRCFQ-----------YYEL--------IKLWMAQ--DYIMPEG-NKELEIIGEEY 430 (673)
Q Consensus 373 ~~~~~~~~i~~~l~~sy~~L~~~~k~cfl-----------~~~l--------~~~w~a~--g~i~~~~-~~~~e~~~~~~ 430 (673)
.. ...++.++|.+||++||+++|.||+ |..+ +..|+|+ ||+.... +.+.+++++ |
T Consensus 357 ~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~i~~w~a~~~G~i~~~~~~~~~~~~~~-~ 433 (549)
T 2a5y_B 357 SR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVAD-R 433 (549)
T ss_dssp HH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEEHHHHHHHSCC-------CCCTHHHHH-H
T ss_pred cc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeeeeeeeeeeccceeccCCCCCCHHHHHH-H
Confidence 21 2457899999999999999999998 6211 7899999 9998765 667888888 9
Q ss_pred HHHHHhcccccccccCCCCcEeEEEeChHHHHHHHHhcccceE
Q 005860 431 FDYLAMRSFFQEFFKDNEGVVVRCKMHDIVHDFAQFLTKNECI 473 (673)
Q Consensus 431 ~~~L~~~sli~~~~~~~~~~~~~~~mHdlv~~~a~~i~~~e~~ 473 (673)
|++|+++||++....+ ...+|+|||++|++|++++.+++.
T Consensus 434 l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 434 LKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 9999999999986543 234899999999999999877653
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.2e-35 Score=333.63 Aligned_cols=256 Identities=19% Similarity=0.170 Sum_probs=207.8
Q ss_pred cceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCe-EEEEEcCCcccHHHHHHHH
Q 005860 170 EIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDK-RMWVCVSDPFDELRIAKAI 248 (673)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i 248 (673)
..|||+.++++|.++|.... +.++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..|
T Consensus 129 ~~VGRe~eLeeL~elL~~~d------~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~L 202 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR------PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC------SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC------CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHH
Confidence 45999999999999997532 3789999999999999999999998778899986 9999999999998888888
Q ss_pred HHHhhCCC------CC-----cCcHHHHHHHHHHHh---CCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcC
Q 005860 249 IEALEGFV------PT-----VGELNSLLESIRASL---VGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTR 314 (673)
Q Consensus 249 ~~~l~~~~------~~-----~~~~~~~~~~l~~~l---~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr 314 (673)
++.++... .+ ..+.+.+...+++.| .+||+||||||||+ ..+|+.+ + +||+||||||
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~f----~---pGSRILVTTR 273 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAF----N---LSCKILLTTR 273 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHHH----H---SSCCEEEECS
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHhh----C---CCeEEEEecc
Confidence 87654211 00 123455666777765 78999999999987 3566653 2 6899999999
Q ss_pred ChhHHHhccccceeecC------CCCccccc------------------cCCchhhHHHHhhhhccCC-CHHHHHHHHhh
Q 005860 315 KETVARMMESIHVISIK------ELSEQECW------------------CKGLPLAAKTIGSLLRFKR-TREEWESILDS 369 (673)
Q Consensus 315 ~~~v~~~~~~~~~~~l~------~L~~~~~~------------------c~GlPLai~~~~~~L~~~~-~~~~w~~~l~~ 369 (673)
++.++..+.....|+++ +|+.+|+| |+|+||||+++|+.|+.+. +.++|+..
T Consensus 274 d~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~--- 350 (1221)
T 1vt4_I 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV--- 350 (1221)
T ss_dssp CSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHC---
T ss_pred ChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcC---
Confidence 99998765555567777 89999998 9999999999999998774 67889763
Q ss_pred hcccchhhhhccchhhhhcccCCChhh-hhhhch------------HHHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHh
Q 005860 370 ELWQLEEFEKGLLAPLLLSYNDLPPMI-KRCFQY------------YELIKLWMAQDYIMPEGNKELEIIGEEYFDYLAM 436 (673)
Q Consensus 370 ~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~cfl~------------~~l~~~w~a~g~i~~~~~~~~e~~~~~~~~~L~~ 436 (673)
....+..+|.+||+.||++. |.||+| ..++.+|.++| ++.++.++++|++
T Consensus 351 -------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe~~L~eLvd 413 (1221)
T 1vt4_I 351 -------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVMVVVNKLHK 413 (1221)
T ss_dssp -------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHHHHHHHHHT
T ss_pred -------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHHHHHHHHHh
Confidence 13568899999999999999 999999 46888998887 1347889999999
Q ss_pred cccccccccCCCCcEeEEEeChHHHHHHH
Q 005860 437 RSFFQEFFKDNEGVVVRCKMHDIVHDFAQ 465 (673)
Q Consensus 437 ~sli~~~~~~~~~~~~~~~mHdlv~~~a~ 465 (673)
+|||+... ...+|+|||++++++.
T Consensus 414 RSLLq~d~-----~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 414 YSLVEKQP-----KESTISIPSIYLELKV 437 (1221)
T ss_dssp SSSSSBCS-----SSSEEBCCCHHHHHHH
T ss_pred hCCEEEeC-----CCCEEEehHHHHHHhc
Confidence 99998731 1237999999999653
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.7e-33 Score=339.99 Aligned_cols=278 Identities=23% Similarity=0.273 Sum_probs=218.7
Q ss_pred ccccCCcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccc-cccC-CeEEEEEcCCccc-
Q 005860 164 SLIDVSEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDV-FEYF-DKRMWVCVSDPFD- 240 (673)
Q Consensus 164 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~- 240 (673)
.+.+++.||||++++++|.++|.... ..+++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~-----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 193 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLN-----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKS 193 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTT-----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhcc-----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCch
Confidence 44456689999999999999997654 45899999999999999999999998543 4445 6788999998543
Q ss_pred -HHHHHHHHHHHhhCCC----CCcCcHHHHHHHHHHHhCCC--eEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEc
Q 005860 241 -ELRIAKAIIEALEGFV----PTVGELNSLLESIRASLVGK--KFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTT 313 (673)
Q Consensus 241 -~~~~~~~i~~~l~~~~----~~~~~~~~~~~~l~~~l~~k--r~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt 313 (673)
....+..++..+.... ....+.+++...++..+.++ ||||||||||+. .+|.. .++||+|||||
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~-------~~~~~~ilvTt 264 (1249)
T 3sfz_A 194 GLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKA-------FDNQCQILLTT 264 (1249)
T ss_dssp HHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTT-------TCSSCEEEEEE
T ss_pred HHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHh-------hcCCCEEEEEc
Confidence 4455777888776543 23456788889999999887 999999999853 34444 36799999999
Q ss_pred CChhHHHh-ccccceeecCC-CCccccc------------------------cCCchhhHHHHhhhhccCCCHHHHHHHH
Q 005860 314 RKETVARM-MESIHVISIKE-LSEQECW------------------------CKGLPLAAKTIGSLLRFKRTREEWESIL 367 (673)
Q Consensus 314 r~~~v~~~-~~~~~~~~l~~-L~~~~~~------------------------c~GlPLai~~~~~~L~~~~~~~~w~~~l 367 (673)
|++.++.. ++....+++.+ |+++|+| |+|+||||+++|++|+.+. ..|...+
T Consensus 265 R~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l 342 (1249)
T 3sfz_A 265 RDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYL 342 (1249)
T ss_dssp SSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHH
T ss_pred CCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHH
Confidence 99999854 45678899996 9999987 9999999999999998764 3566665
Q ss_pred hhhcccc----h----hhhhccchhhhhcccCCChhhhhhhch------------HHHHHHHHHcCCCCCCCCCcHHHHH
Q 005860 368 DSELWQL----E----EFEKGLLAPLLLSYNDLPPMIKRCFQY------------YELIKLWMAQDYIMPEGNKELEIIG 427 (673)
Q Consensus 368 ~~~~~~~----~----~~~~~i~~~l~~sy~~L~~~~k~cfl~------------~~l~~~w~a~g~i~~~~~~~~e~~~ 427 (673)
+...... . .....+..+|.+||+.||+++|.||+| ..++..|.++ ++.+
T Consensus 343 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~ 411 (1249)
T 3sfz_A 343 RQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEV 411 (1249)
T ss_dssp HHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHH
T ss_pred HHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHH
Confidence 5432211 1 112468899999999999999999999 5778888554 4667
Q ss_pred HHHHHHHHhcccccccccCCCCcEeEEEeChHHHHHHHHhcccc
Q 005860 428 EEYFDYLAMRSFFQEFFKDNEGVVVRCKMHDIVHDFAQFLTKNE 471 (673)
Q Consensus 428 ~~~~~~L~~~sli~~~~~~~~~~~~~~~mHdlv~~~a~~i~~~e 471 (673)
++++++|+++||++... ++...+|+||+++|++++..+.++
T Consensus 412 ~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 412 EDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 89999999999998643 334457999999999999987655
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=5.9e-30 Score=288.19 Aligned_cols=270 Identities=24% Similarity=0.269 Sum_probs=200.7
Q ss_pred cCCcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccc-cccC-CeEEEEEcCCcccHHHH
Q 005860 167 DVSEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDV-FEYF-DKRMWVCVSDPFDELRI 244 (673)
Q Consensus 167 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~~ 244 (673)
.++.||||+.++++|.++|.... .+.++|+|+||||+||||||+.++++.++ ..+| +.++|++++.. +...+
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~-----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~ 195 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLK-----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGL 195 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTST-----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHH
T ss_pred CCCeecccHHHHHHHHHHHhccc-----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHH
Confidence 45679999999999999997543 35789999999999999999999998665 7889 58999999775 33334
Q ss_pred HHHH---HHHhhCC----CCCcCcHHHHHHHHHHHhCC--CeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCC
Q 005860 245 AKAI---IEALEGF----VPTVGELNSLLESIRASLVG--KKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRK 315 (673)
Q Consensus 245 ~~~i---~~~l~~~----~~~~~~~~~~~~~l~~~l~~--kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 315 (673)
+..+ +..++.. .....+.+.....++..+.+ +++||||||+|+. ..+. ..++|++||||||+
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~-------~l~~~~~ilvTsR~ 266 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLK-------AFDSQCQILLTTRD 266 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHH-------TTCSSCEEEEEESC
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHHH-------HhcCCCeEEEECCC
Confidence 4443 4444421 22345667778888888866 7999999999853 2232 23578999999999
Q ss_pred hhHHHhccccceeec---CCCCccccc------------------------cCCchhhHHHHhhhhccCCCHHHHHHHHh
Q 005860 316 ETVARMMESIHVISI---KELSEQECW------------------------CKGLPLAAKTIGSLLRFKRTREEWESILD 368 (673)
Q Consensus 316 ~~v~~~~~~~~~~~l---~~L~~~~~~------------------------c~GlPLai~~~~~~L~~~~~~~~w~~~l~ 368 (673)
..++..+. ...+++ ++|+.+|++ |+|+|||+..+|+.++.+. ..|...++
T Consensus 267 ~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~ 343 (591)
T 1z6t_A 267 KSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLK 343 (591)
T ss_dssp GGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHH
T ss_pred cHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHH
Confidence 98877643 234444 589998887 9999999999999998764 36777665
Q ss_pred hhcccc--------hhhhhccchhhhhcccCCChhhhhhhch------------HHHHHHHHHcCCCCCCCCCcHHHHHH
Q 005860 369 SELWQL--------EEFEKGLLAPLLLSYNDLPPMIKRCFQY------------YELIKLWMAQDYIMPEGNKELEIIGE 428 (673)
Q Consensus 369 ~~~~~~--------~~~~~~i~~~l~~sy~~L~~~~k~cfl~------------~~l~~~w~a~g~i~~~~~~~~e~~~~ 428 (673)
...... ......+..++..||+.||++.|.||++ ..+...|.++ .+.+.
T Consensus 344 ~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~ 412 (591)
T 1z6t_A 344 QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVE 412 (591)
T ss_dssp HHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHH
T ss_pred HHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----------HHHHH
Confidence 432211 1122467889999999999999999998 3445556432 23467
Q ss_pred HHHHHHHhcccccccccCCCCcEeEEEeChHHHHHHHHhc
Q 005860 429 EYFDYLAMRSFFQEFFKDNEGVVVRCKMHDIVHDFAQFLT 468 (673)
Q Consensus 429 ~~~~~L~~~sli~~~~~~~~~~~~~~~mHdlv~~~a~~i~ 468 (673)
.++++|+++||++... ++....|+||+++|++++...
T Consensus 413 ~~l~~L~~~~Ll~~~~---~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 413 DILQEFVNKSLLFCDR---NGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHTTSSEEEE---ETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHhCcCeEEec---CCCccEEEEcHHHHHHHHhhh
Confidence 8999999999998543 233458999999999998773
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.65 E-value=1.9e-16 Score=135.12 Aligned_cols=80 Identities=24% Similarity=0.475 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc--ccCCHHHHHHHHHHHHhhhhhhhhHH
Q 005860 4 AIVSPLLEQLISISLEEAREQMKLVVGIDNEVAKLKHNFLAIQAVLVDAEQR--QFKEETVRLWLDQLKDVSYYMGDVLD 81 (673)
Q Consensus 4 a~v~~~~~~l~~~l~~~~~~e~~~~~~~~~~i~~L~~~L~~i~~~l~~a~~~--~~~~~~~~~wl~~lr~~ay~~ed~lD 81 (673)
|+|+++++||++. +.+|+.++.||++++++|+++|.+|++||.+|+.+ +.+++.++.|+++||++|||+|||||
T Consensus 1 a~v~~ll~KL~~l----l~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD 76 (115)
T 3qfl_A 1 AAISNLIPKLGEL----LTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVD 76 (115)
T ss_dssp CTTCSHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH----HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888887 57889999999999999999999999999999987 56899999999999999999999999
Q ss_pred HHHHHH
Q 005860 82 EWNTAR 87 (673)
Q Consensus 82 ~~~~~~ 87 (673)
+|.++.
T Consensus 77 ~f~~~~ 82 (115)
T 3qfl_A 77 KFLVQV 82 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999764
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.53 E-value=4.1e-15 Score=153.88 Aligned_cols=169 Identities=21% Similarity=0.218 Sum_probs=133.5
Q ss_pred cCceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccc-hhhhcccc
Q 005860 491 QEKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNS-TNKILKGI 569 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~lp~~i 569 (673)
..+++.+.+..+....+|..+..+++|++|++.++.. . .+|..+.++++|++|++++ |. +..+|..+
T Consensus 103 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l----~-~lp~~l~~l~~L~~L~L~~-------n~~~~~~p~~~ 170 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPL----R-ALPASIASLNRLRELSIRA-------CPELTELPEPL 170 (328)
T ss_dssp GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCC----C-CCCGGGGGCTTCCEEEEEE-------ETTCCCCCSCS
T ss_pred CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCcc----c-cCcHHHhcCcCCCEEECCC-------CCCccccChhH
Confidence 5678999999888887888888899999999998874 2 4566688999999999998 65 55677776
Q ss_pred cc---------ccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeecccccc-ccccccC
Q 005860 570 EK---------LIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCL-EFIPKGI 639 (673)
Q Consensus 570 ~~---------L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l-~~lP~~i 639 (673)
+. +++|++|+|++|.+..+|..++++++|++|++++|. +..+|..++++++|++|++++|.+ ..+|..+
T Consensus 171 ~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~ 249 (328)
T 4fcg_A 171 ASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIF 249 (328)
T ss_dssp EEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCT
T ss_pred hhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHHHh
Confidence 65 999999999999999999999999999999999976 888999999999999999888654 4677788
Q ss_pred CCCCCCCcCCeeEEcc--CCccCCCccccCCCCCC
Q 005860 640 QRLTNLRTLSEFVVVR--GGSKYGGKACNLEGLRY 672 (673)
Q Consensus 640 ~~L~~L~~L~~~~~~~--~~~~~~~~~~~l~~L~~ 672 (673)
+.+++|+.|..-.... .-+..+..+.+|+.|.+
T Consensus 250 ~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 284 (328)
T 4fcg_A 250 GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284 (328)
T ss_dssp TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEEC
T ss_pred cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeC
Confidence 8888888775433221 11122445666666654
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.46 E-value=3.9e-14 Score=146.55 Aligned_cols=149 Identities=26% Similarity=0.303 Sum_probs=102.9
Q ss_pred cCceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHH---------hhhCCccceeeeccccccccccc
Q 005860 491 QEKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSL---------FDQLKCLRALRIATLMNTWDVNS 561 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~---------~~~l~~L~~L~L~~~~~~~~~~~ 561 (673)
..+++.+.+..+....+|..+..+++|++|.+.+|... ..+|.. |.++++|++|++++ +.
T Consensus 126 l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~----~~~p~~~~~~~~~~~~~~l~~L~~L~L~~-------n~ 194 (328)
T 4fcg_A 126 FAGLETLTLARNPLRALPASIASLNRLRELSIRACPEL----TELPEPLASTDASGEHQGLVNLQSLRLEW-------TG 194 (328)
T ss_dssp GTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTC----CCCCSCSEEEC-CCCEEESTTCCEEEEEE-------EC
T ss_pred cCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCc----cccChhHhhccchhhhccCCCCCEEECcC-------CC
Confidence 45678888887777777777777888888888775421 122222 23477777777777 77
Q ss_pred hhhhccccccccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccc-cccccccCC
Q 005860 562 TNKILKGIEKLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSC-LEFIPKGIQ 640 (673)
Q Consensus 562 ~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~-l~~lP~~i~ 640 (673)
+..+|..++.+++|++|+|++|.+..+|+.++.+++|++|++++|+....+|..++.+++|++|++++|. ...+|..++
T Consensus 195 l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~ 274 (328)
T 4fcg_A 195 IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH 274 (328)
T ss_dssp CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGG
T ss_pred cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhh
Confidence 6677777777777777777777777777777777777777777777667777777777777777766643 445666666
Q ss_pred CCCCCCcCCe
Q 005860 641 RLTNLRTLSE 650 (673)
Q Consensus 641 ~L~~L~~L~~ 650 (673)
++++|+.|..
T Consensus 275 ~l~~L~~L~L 284 (328)
T 4fcg_A 275 RLTQLEKLDL 284 (328)
T ss_dssp GCTTCCEEEC
T ss_pred cCCCCCEEeC
Confidence 6666665543
No 8
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.43 E-value=5.8e-13 Score=138.99 Aligned_cols=172 Identities=14% Similarity=0.214 Sum_probs=114.7
Q ss_pred ccCCcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcc------
Q 005860 166 IDVSEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPF------ 239 (673)
Q Consensus 166 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~------ 239 (673)
..+..|+||+.++++|.+++... +++.|+|++|+|||||++++.+.. + .+|+.+....
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~---------~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~ 72 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY---------PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHI 72 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC---------SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCB
T ss_pred CChHhcCChHHHHHHHHHHHhcC---------CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCC
Confidence 34567999999999999988531 589999999999999999998742 2 6788765432
Q ss_pred cHHHHHHHHHHHhhC----------------CCC--CcCcHHHHHHHHHHHhCC-CeEEEEEcCCCCCCc-------cch
Q 005860 240 DELRIAKAIIEALEG----------------FVP--TVGELNSLLESIRASLVG-KKFLLILDDMWTDDY-------SKW 293 (673)
Q Consensus 240 ~~~~~~~~i~~~l~~----------------~~~--~~~~~~~~~~~l~~~l~~-kr~LlVLDdvw~~~~-------~~~ 293 (673)
+...++..+.+.+.. ... ...+..++...+.+.... ++++|||||++.-+. ..+
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~ 152 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELL 152 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHH
Confidence 455666666665532 000 123455666666665543 389999999954321 112
Q ss_pred hhhhhhccCCCCCeEEEEEcCChhHHHhc-----------cc-cceeecCCCCccccc----------------------
Q 005860 294 EPFHYCLKNGVRGSKILVTTRKETVARMM-----------ES-IHVISIKELSEQECW---------------------- 339 (673)
Q Consensus 294 ~~l~~~l~~~~~gs~iivTtr~~~v~~~~-----------~~-~~~~~l~~L~~~~~~---------------------- 339 (673)
..+...... ..+.++|+|++...+...+ +. ...+++.+|+.+|+.
T Consensus 153 ~~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i 231 (350)
T 2qen_A 153 ALFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEA 231 (350)
T ss_dssp HHHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHH
T ss_pred HHHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 223322222 2477899998876542211 11 247889999988764
Q ss_pred ---cCCchhhHHHHhhhh
Q 005860 340 ---CKGLPLAAKTIGSLL 354 (673)
Q Consensus 340 ---c~GlPLai~~~~~~L 354 (673)
|+|+|+++..++..+
T Consensus 232 ~~~tgG~P~~l~~~~~~~ 249 (350)
T 2qen_A 232 VELLDGIPGWLVVFGVEY 249 (350)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHH
Confidence 999999999988764
No 9
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.40 E-value=3.6e-13 Score=153.91 Aligned_cols=150 Identities=21% Similarity=0.189 Sum_probs=86.0
Q ss_pred CceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhcccccc
Q 005860 492 EKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIEK 571 (673)
Q Consensus 492 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~~ 571 (673)
..++++.+..+.....+..+....+|+.+.+............++..|..+..|+.|+|++ +.+..+|..+..
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~-------n~l~~l~~~~~~ 245 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSN-------LQIFNISANIFK 245 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTT-------SCCSCCCGGGGG
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCC-------CCCCCCChhhcC
Confidence 3456666655544444444444444444444332211111224566778888888888888 888788888888
Q ss_pred ccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccccccccCCCCCCCCcCC
Q 005860 572 LIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKGIQRLTNLRTLS 649 (673)
Q Consensus 572 L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~i~~L~~L~~L~ 649 (673)
+.+|++|+|++|.+..+|.+|++|++|++|+|++|. +..+|..|++|++|++|++++|.+..+|.+|++|++|++|.
T Consensus 246 l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLG 322 (727)
T ss_dssp CCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEE
T ss_pred CCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEe
Confidence 888888888888888888888888888888888876 77888888888888888888888888888888887777764
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.38 E-value=4.9e-13 Score=137.30 Aligned_cols=129 Identities=19% Similarity=0.252 Sum_probs=58.7
Q ss_pred ccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchh-hhccccccccccccceecCCCCc
Q 005860 508 PISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTN-KILKGIEKLIHLRYLRLVGLGTE 586 (673)
Q Consensus 508 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~-~lp~~i~~L~~Lr~L~L~~~~i~ 586 (673)
|..+..+++|++|.+.++.. ...+|..|.++++|++|++++ +.+. .+|..++.+++|++|+|++|.+.
T Consensus 94 p~~l~~l~~L~~L~Ls~n~l----~~~~p~~~~~l~~L~~L~Ls~-------N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 162 (313)
T 1ogq_A 94 PPAIAKLTQLHYLYITHTNV----SGAIPDFLSQIKTLVTLDFSY-------NALSGTLPPSISSLPNLVGITFDGNRIS 162 (313)
T ss_dssp CGGGGGCTTCSEEEEEEECC----EEECCGGGGGCTTCCEEECCS-------SEEESCCCGGGGGCTTCCEEECCSSCCE
T ss_pred ChhHhcCCCCCEEECcCCee----CCcCCHHHhCCCCCCEEeCCC-------CccCCcCChHHhcCCCCCeEECcCCccc
Confidence 33344444444444444431 112333344444555555544 4433 34444455555555555555443
Q ss_pred -ccchhhhcCC-CccEEEeccCCCCccccccccccccCCeeecccccccc-ccccCCCCCCCCcC
Q 005860 587 -ELPETCCELL-NLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEF-IPKGIQRLTNLRTL 648 (673)
Q Consensus 587 -~LP~~i~~L~-~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~-lP~~i~~L~~L~~L 648 (673)
.+|..++.+. +|++|++++|..-..+|..++.+. |++|++++|.+.. .|..++.+++|+.|
T Consensus 163 ~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 226 (313)
T 1ogq_A 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKI 226 (313)
T ss_dssp EECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEE
T ss_pred CcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEE
Confidence 4454555544 455555554431124444444444 5555555554442 33344555555544
No 11
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.38 E-value=4.7e-12 Score=135.30 Aligned_cols=171 Identities=18% Similarity=0.123 Sum_probs=108.0
Q ss_pred CCcceechhhHHHHHHHh-ccCCcccccCCeEEEEE--EccCCChHHHHHHHHhcCcccc---ccCC-eEEEEEcCCccc
Q 005860 168 VSEIRGRDEEKSSLKSKL-LCESSEEIINDIQIITI--VGMGGIGKTTLAQFAYNDSDVF---EYFD-KRMWVCVSDPFD 240 (673)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~---~~F~-~~~wv~vs~~~~ 240 (673)
+..++||+.+++++..+| ....... ......+.| +|++|+||||||+.+++..... ..|+ .++|+.+....+
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~-~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGA-GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSS-CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCC-CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 468999999999999988 4211000 012345555 9999999999999999852211 0122 367888767778
Q ss_pred HHHHHHHHHHHhhCCCCC-cCcHHHHHHHHHHHhC--CCeEEEEEcCCCCCC------ccchhhhhhhccCC---C--CC
Q 005860 241 ELRIAKAIIEALEGFVPT-VGELNSLLESIRASLV--GKKFLLILDDMWTDD------YSKWEPFHYCLKNG---V--RG 306 (673)
Q Consensus 241 ~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~kr~LlVLDdvw~~~------~~~~~~l~~~l~~~---~--~g 306 (673)
...++..++.+++...+. ..+...+...+.+.+. +++++|||||+|.-. ...+..+...+... + ..
T Consensus 100 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 889999999999765332 2334555666666664 789999999996522 12233332333211 2 34
Q ss_pred eEEEEEcCChhHHHhcc--------c-cceeecCCCCccccc
Q 005860 307 SKILVTTRKETVARMME--------S-IHVISIKELSEQECW 339 (673)
Q Consensus 307 s~iivTtr~~~v~~~~~--------~-~~~~~l~~L~~~~~~ 339 (673)
..||+||+...+...+. . ...+++++++.++.+
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~ 221 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELY 221 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHH
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHH
Confidence 45888887655432211 1 223889999988765
No 12
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.36 E-value=7.9e-13 Score=132.74 Aligned_cols=146 Identities=27% Similarity=0.436 Sum_probs=89.0
Q ss_pred cCceEEEEEEcCCCCcccc-ccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccc-
Q 005860 491 QEKLRHSMLVLGYEASFPI-SIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKG- 568 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~- 568 (673)
+..++++.+..+....+++ .+..+++|++|.+.++.. ....+..|..+++|+.|++++ +.+..+|..
T Consensus 36 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l----~~i~~~~~~~l~~L~~L~l~~-------n~l~~~~~~~ 104 (270)
T 2o6q_A 36 PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL----QTLPAGIFKELKNLETLWVTD-------NKLQALPIGV 104 (270)
T ss_dssp CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC----SCCCTTTTSSCTTCCEEECCS-------SCCCCCCTTT
T ss_pred CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc----CeeChhhhcCCCCCCEEECCC-------CcCCcCCHhH
Confidence 3456777776666555543 455677777777766652 233344456667777777776 666655543
Q ss_pred cccccccccceecCCCCcccch-hhhcCCCccEEEeccCCCCcccccc-ccccccCCeeecccccccccccc-CCCCCCC
Q 005860 569 IEKLIHLRYLRLVGLGTEELPE-TCCELLNLQVLEIEQCTSLKRLPLG-IGKLVNLRHLTYDDSCLEFIPKG-IQRLTNL 645 (673)
Q Consensus 569 i~~L~~Lr~L~L~~~~i~~LP~-~i~~L~~L~~L~l~~c~~l~~lP~~-i~~L~~Lr~L~l~~~~l~~lP~~-i~~L~~L 645 (673)
+..+.+|++|+|++|.+..+|. .+..+++|++|++++|. +..+|.. ++.+++|++|++++|.+..+|.. +.++++|
T Consensus 105 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 183 (270)
T 2o6q_A 105 FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTEL 183 (270)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred cccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCc
Confidence 4666667777777666666653 35666667777776654 6666644 56666666666666666666543 4555555
Q ss_pred CcC
Q 005860 646 RTL 648 (673)
Q Consensus 646 ~~L 648 (673)
++|
T Consensus 184 ~~L 186 (270)
T 2o6q_A 184 KTL 186 (270)
T ss_dssp CEE
T ss_pred CEE
Confidence 544
No 13
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.34 E-value=1.5e-12 Score=124.08 Aligned_cols=144 Identities=17% Similarity=0.198 Sum_probs=121.0
Q ss_pred cCceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhh-hcccc
Q 005860 491 QEKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNK-ILKGI 569 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~-lp~~i 569 (673)
..+++.+.+..+....++ .+..+++|++|.+.++.. ..+ ..+..++.|+.|++++ +.+.. .|..+
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~-----~~~-~~l~~l~~L~~L~l~~-------n~l~~~~~~~l 108 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHA-----TNY-NPISGLSNLERLRIMG-------KDVTSDKIPNL 108 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCC-----SCC-GGGTTCTTCCEEEEEC-------TTCBGGGSCCC
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCC-----Ccc-hhhhcCCCCCEEEeEC-------CccCcccChhh
Confidence 456889999988877666 678899999999998853 112 2577899999999999 88765 68889
Q ss_pred ccccccccceecCCCCcc-cchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccccccccCCCCCCCCcC
Q 005860 570 EKLIHLRYLRLVGLGTEE-LPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKGIQRLTNLRTL 648 (673)
Q Consensus 570 ~~L~~Lr~L~L~~~~i~~-LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~i~~L~~L~~L 648 (673)
+.+++|++|+|++|.+.. .|..++.+++|++|++++|..+..+| .+..+++|++|++++|.+..+| .+..+++|+.|
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L 186 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQL 186 (197)
T ss_dssp TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEE
T ss_pred cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEE
Confidence 999999999999999775 78889999999999999987688888 7999999999999999999887 67777776666
Q ss_pred Ce
Q 005860 649 SE 650 (673)
Q Consensus 649 ~~ 650 (673)
..
T Consensus 187 ~l 188 (197)
T 4ezg_A 187 YA 188 (197)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 14
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.33 E-value=9.9e-13 Score=133.11 Aligned_cols=102 Identities=24% Similarity=0.317 Sum_probs=46.6
Q ss_pred hhhCCccceeeeccccccccccchhhh-ccccccccccccceecCCCCcccchh-hhcCCCccEEEeccCCCCcccccc-
Q 005860 539 FDQLKCLRALRIATLMNTWDVNSTNKI-LKGIEKLIHLRYLRLVGLGTEELPET-CCELLNLQVLEIEQCTSLKRLPLG- 615 (673)
Q Consensus 539 ~~~l~~L~~L~L~~~~~~~~~~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~LP~~-i~~L~~L~~L~l~~c~~l~~lP~~- 615 (673)
|..+++|+.|++++ +.+..+ |..+..+++|++|+|++|.+..+|.. ++.+++|++|++++|. +..+|..
T Consensus 101 ~~~l~~L~~L~l~~-------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~ 172 (285)
T 1ozn_A 101 FHGLGRLHTLHLDR-------CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERA 172 (285)
T ss_dssp TTTCTTCCEEECTT-------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTT
T ss_pred hcCCcCCCEEECCC-------CcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHH
Confidence 34444444444444 443333 23344445555555555554444432 4445555555555443 4444432
Q ss_pred ccccccCCeeeccccccccc-cccCCCCCCCCcC
Q 005860 616 IGKLVNLRHLTYDDSCLEFI-PKGIQRLTNLRTL 648 (673)
Q Consensus 616 i~~L~~Lr~L~l~~~~l~~l-P~~i~~L~~L~~L 648 (673)
+..+++|++|++++|.+..+ |..++++++|+.|
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 206 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred hcCccccCEEECCCCcccccCHhHccCcccccEe
Confidence 44455555555555544443 3334444444433
No 15
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.31 E-value=1.9e-12 Score=131.34 Aligned_cols=145 Identities=23% Similarity=0.240 Sum_probs=116.6
Q ss_pred cCceEEEEEEcCCCCccc-cccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhcccc
Q 005860 491 QEKLRHSMLVLGYEASFP-ISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGI 569 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i 569 (673)
+..++.+.+..+....++ ..+..+++|++|.+.++... . ++. ...+++|+.|++++ +.+..+|..+
T Consensus 30 ~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~----~-~~~-~~~l~~L~~L~Ls~-------N~l~~l~~~~ 96 (290)
T 1p9a_G 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT----K-LQV-DGTLPVLGTLDLSH-------NQLQSLPLLG 96 (290)
T ss_dssp CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC----E-EEC-CSCCTTCCEEECCS-------SCCSSCCCCT
T ss_pred CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC----c-ccC-CCCCCcCCEEECCC-------CcCCcCchhh
Confidence 467888888887775553 45677899999999887641 1 111 26788999999999 8888999999
Q ss_pred ccccccccceecCCCCcccc-hhhhcCCCccEEEeccCCCCcccccc-ccccccCCeeeccccccccccccC-CCCCCCC
Q 005860 570 EKLIHLRYLRLVGLGTEELP-ETCCELLNLQVLEIEQCTSLKRLPLG-IGKLVNLRHLTYDDSCLEFIPKGI-QRLTNLR 646 (673)
Q Consensus 570 ~~L~~Lr~L~L~~~~i~~LP-~~i~~L~~L~~L~l~~c~~l~~lP~~-i~~L~~Lr~L~l~~~~l~~lP~~i-~~L~~L~ 646 (673)
..+++|++|+|++|.+..+| ..+..+++|++|++++|. +..+|.. +..+++|++|++++|.++.+|.++ .++++|+
T Consensus 97 ~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 175 (290)
T 1p9a_G 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175 (290)
T ss_dssp TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCC
T ss_pred ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCC
Confidence 99999999999999998887 568899999999999876 8888765 578999999999999999998764 5677766
Q ss_pred cCC
Q 005860 647 TLS 649 (673)
Q Consensus 647 ~L~ 649 (673)
.|.
T Consensus 176 ~L~ 178 (290)
T 1p9a_G 176 TLL 178 (290)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
No 16
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.31 E-value=2.1e-12 Score=126.16 Aligned_cols=120 Identities=31% Similarity=0.469 Sum_probs=61.9
Q ss_pred cccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccc-cccccccccceecCCCCcccchh-h
Q 005860 515 KNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKG-IEKLIHLRYLRLVGLGTEELPET-C 592 (673)
Q Consensus 515 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~-i~~L~~Lr~L~L~~~~i~~LP~~-i 592 (673)
++|+.|.+.++.. ....+..|..+++|+.|+|++ +.+..+|.. +..+++|++|+|++|.+..+|.. +
T Consensus 40 ~~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~L~~-------N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 108 (229)
T 3e6j_A 40 TNAQILYLHDNQI----TKLEPGVFDSLINLKELYLGS-------NQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVF 108 (229)
T ss_dssp TTCSEEECCSSCC----CCCCTTTTTTCTTCCEEECCS-------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCCEEEcCCCcc----CccCHHHhhCccCCcEEECCC-------CCCCCcChhhcccCCCcCEEECCCCcCCccChhHh
Confidence 4555555555442 222334445555555555555 555555433 35555555555555555555433 3
Q ss_pred hcCCCccEEEeccCCCCccccccccccccCCeeecccccccccccc-CCCCCCCC
Q 005860 593 CELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKG-IQRLTNLR 646 (673)
Q Consensus 593 ~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~-i~~L~~L~ 646 (673)
..+++|++|+++++. +..+|..+.++++|++|++++|.+..+|.. +..+++|+
T Consensus 109 ~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 162 (229)
T 3e6j_A 109 DRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162 (229)
T ss_dssp TTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 455555555555543 555555555555555555555555555532 33344333
No 17
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.30 E-value=2.4e-12 Score=127.64 Aligned_cols=147 Identities=23% Similarity=0.297 Sum_probs=121.5
Q ss_pred cCceEEEEEEcCCCCcccc-ccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhcc-c
Q 005860 491 QEKLRHSMLVLGYEASFPI-SIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILK-G 568 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~-~ 568 (673)
+..++.+.+..+.....++ .+..+++|++|.+.++.. ....+..|..+++|+.|++++ +.+..+|. .
T Consensus 34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~-------n~l~~~~~~~ 102 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL----QTLSAGVFDDLTELGTLGLAN-------NQLASLPLGV 102 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC----CCCCTTTTTTCTTCCEEECTT-------SCCCCCCTTT
T ss_pred CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcC----CccCHhHhccCCcCCEEECCC-------CcccccChhH
Confidence 4678889988887766544 467899999999998863 344566688999999999999 88888765 5
Q ss_pred cccccccccceecCCCCcccchh-hhcCCCccEEEeccCCCCccccc-cccccccCCeeeccccccccccc-cCCCCCCC
Q 005860 569 IEKLIHLRYLRLVGLGTEELPET-CCELLNLQVLEIEQCTSLKRLPL-GIGKLVNLRHLTYDDSCLEFIPK-GIQRLTNL 645 (673)
Q Consensus 569 i~~L~~Lr~L~L~~~~i~~LP~~-i~~L~~L~~L~l~~c~~l~~lP~-~i~~L~~Lr~L~l~~~~l~~lP~-~i~~L~~L 645 (673)
+..+.+|++|+|++|.+..+|.. +..+++|++|+|++|. +..+|. .++.+++|++|++++|.+..+|+ .+..+++|
T Consensus 103 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 181 (251)
T 3m19_A 103 FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181 (251)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCC
Confidence 68999999999999999999876 5889999999999976 888887 58999999999999999998886 46667777
Q ss_pred CcCC
Q 005860 646 RTLS 649 (673)
Q Consensus 646 ~~L~ 649 (673)
+.|.
T Consensus 182 ~~L~ 185 (251)
T 3m19_A 182 QTIT 185 (251)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 6653
No 18
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.29 E-value=1.6e-12 Score=131.58 Aligned_cols=143 Identities=24% Similarity=0.317 Sum_probs=61.4
Q ss_pred ceEEEEEEcCCCCcccc-ccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccc-hhhh-cccc
Q 005860 493 KLRHSMLVLGYEASFPI-SIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNS-TNKI-LKGI 569 (673)
Q Consensus 493 ~~r~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l-p~~i 569 (673)
+++++.+..+.....++ .+..+++|++|.+.++.. ....+..|..+++|+.|++++ +. +..+ |..+
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~-------n~~l~~~~~~~~ 101 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL----ARIDAAAFTGLALLEQLDLSD-------NAQLRSVDPATF 101 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC----CEECTTTTTTCTTCCEEECCS-------CTTCCCCCTTTT
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcc----ceeCHhhcCCccCCCEEeCCC-------CCCccccCHHHh
Confidence 44444444444333322 233444444444444431 122233344444455555444 43 3333 3344
Q ss_pred ccccccccceecCCCCccc-chhhhcCCCccEEEeccCCCCcccccc-ccccccCCeeecccccccccccc-CCCCCCCC
Q 005860 570 EKLIHLRYLRLVGLGTEEL-PETCCELLNLQVLEIEQCTSLKRLPLG-IGKLVNLRHLTYDDSCLEFIPKG-IQRLTNLR 646 (673)
Q Consensus 570 ~~L~~Lr~L~L~~~~i~~L-P~~i~~L~~L~~L~l~~c~~l~~lP~~-i~~L~~Lr~L~l~~~~l~~lP~~-i~~L~~L~ 646 (673)
..+++|++|+|++|.+..+ |..+.++++|++|++++|. +..+|.. ++++++|++|++++|.+..+|.. +..+++|+
T Consensus 102 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 180 (285)
T 1ozn_A 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180 (285)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccC
Confidence 4444455555544444443 2334444455555554433 4444432 44444455555444444444432 33343333
Q ss_pred c
Q 005860 647 T 647 (673)
Q Consensus 647 ~ 647 (673)
.
T Consensus 181 ~ 181 (285)
T 1ozn_A 181 R 181 (285)
T ss_dssp E
T ss_pred E
Confidence 3
No 19
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.29 E-value=2.7e-12 Score=127.30 Aligned_cols=165 Identities=24% Similarity=0.229 Sum_probs=125.2
Q ss_pred eEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhcc-ccccc
Q 005860 494 LRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILK-GIEKL 572 (673)
Q Consensus 494 ~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~-~i~~L 572 (673)
.+++.+.......+|..+. ++++.|.+.++.. ....+..|.++++|++|++++ +.+..+++ .+..+
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~-------n~l~~~~~~~~~~l 82 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGL----ATLSDATFRGLTKLTWLNLDY-------NQLQTLSAGVFDDL 82 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCC----CCCCTTTTTTCTTCCEEECTT-------SCCCCCCTTTTTTC
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCc----CccCHhHhcCcccCCEEECCC-------CcCCccCHhHhccC
Confidence 3445555555566665543 6899999998873 344556788999999999999 88877655 47999
Q ss_pred cccccceecCCCCcccch-hhhcCCCccEEEeccCCCCcccccc-ccccccCCeeecccccccccccc-CCCCCCCCcCC
Q 005860 573 IHLRYLRLVGLGTEELPE-TCCELLNLQVLEIEQCTSLKRLPLG-IGKLVNLRHLTYDDSCLEFIPKG-IQRLTNLRTLS 649 (673)
Q Consensus 573 ~~Lr~L~L~~~~i~~LP~-~i~~L~~L~~L~l~~c~~l~~lP~~-i~~L~~Lr~L~l~~~~l~~lP~~-i~~L~~L~~L~ 649 (673)
++|++|+|++|.+..+|. .+..+++|++|+|++|. +..+|.. ++.+++|++|++++|.+..+|.. ++.+++|++|.
T Consensus 83 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 161 (251)
T 3m19_A 83 TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCEEECCCCcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEE
Confidence 999999999999999884 56899999999999976 8888876 68999999999999999999874 77888877764
Q ss_pred eeEE--ccCCccCCCccccCCCCCC
Q 005860 650 EFVV--VRGGSKYGGKACNLEGLRY 672 (673)
Q Consensus 650 ~~~~--~~~~~~~~~~~~~l~~L~~ 672 (673)
.-.- .......+..+.+|+.|.+
T Consensus 162 L~~N~l~~~~~~~~~~l~~L~~L~l 186 (251)
T 3m19_A 162 LSTNQLQSVPHGAFDRLGKLQTITL 186 (251)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCCcCCccCHHHHhCCCCCCEEEe
Confidence 3221 2222223455666666654
No 20
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.28 E-value=3.1e-12 Score=131.01 Aligned_cols=140 Identities=19% Similarity=0.238 Sum_probs=111.7
Q ss_pred ccCceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhcccc
Q 005860 490 YQEKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGI 569 (673)
Q Consensus 490 ~~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i 569 (673)
...+++.+.+..+.....++ +..+++|++|.+.++... . ++ .+..+++|+.|++++ +.+..++. +
T Consensus 61 ~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~----~-~~-~~~~l~~L~~L~l~~-------n~l~~~~~-l 125 (308)
T 1h6u_A 61 YLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK----N-VS-AIAGLQSIKTLDLTS-------TQITDVTP-L 125 (308)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS----C-CG-GGTTCTTCCEEECTT-------SCCCCCGG-G
T ss_pred ccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCC----C-ch-hhcCCCCCCEEECCC-------CCCCCchh-h
Confidence 35678888888887766665 778889999998887641 1 22 467888999999998 88777765 8
Q ss_pred ccccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccccccccCCCCCCCCcC
Q 005860 570 EKLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKGIQRLTNLRTL 648 (673)
Q Consensus 570 ~~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~i~~L~~L~~L 648 (673)
..+++|++|+|++|.+..+|. ++.+++|++|++++|. +..+|. +.++++|++|++++|.+..+|. +..+++|+.|
T Consensus 126 ~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 200 (308)
T 1h6u_A 126 AGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEV 200 (308)
T ss_dssp TTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEE
T ss_pred cCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEE
Confidence 888999999999999888887 8889999999999876 888876 8889999999999998888875 5556665555
No 21
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.27 E-value=2.2e-12 Score=119.35 Aligned_cols=129 Identities=19% Similarity=0.180 Sum_probs=89.0
Q ss_pred ccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccccccccccccceecCCCCcc-cchhh
Q 005860 514 AKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIEKLIHLRYLRLVGLGTEE-LPETC 592 (673)
Q Consensus 514 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~-LP~~i 592 (673)
.++|+.|.+.++... ...+|..+..+++|++|++++ +.+..+ ..++.+++|++|+|++|.+.. +|..+
T Consensus 23 ~~~L~~L~l~~n~l~---~~~i~~~~~~l~~L~~L~l~~-------n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 91 (168)
T 2ell_A 23 PAAVRELVLDNCKSN---DGKIEGLTAEFVNLEFLSLIN-------VGLISV-SNLPKLPKLKKLELSENRIFGGLDMLA 91 (168)
T ss_dssp TTSCSEEECCSCBCB---TTBCSSCCGGGGGCCEEEEES-------SCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred cccCCEEECCCCCCC---hhhHHHHHHhCCCCCEEeCcC-------CCCCCh-hhhccCCCCCEEECcCCcCchHHHHHH
Confidence 356666666666531 013344456677777777777 766666 667777788888888777666 66666
Q ss_pred hcCCCccEEEeccCCCCcccc--ccccccccCCeeeccccccccccc----cCCCCCCCCcCCeeEEc
Q 005860 593 CELLNLQVLEIEQCTSLKRLP--LGIGKLVNLRHLTYDDSCLEFIPK----GIQRLTNLRTLSEFVVV 654 (673)
Q Consensus 593 ~~L~~L~~L~l~~c~~l~~lP--~~i~~L~~Lr~L~l~~~~l~~lP~----~i~~L~~L~~L~~~~~~ 654 (673)
.++++|++|++++|. +..+| ..++.+++|++|++++|.+..+|. .+..+++|+.|......
T Consensus 92 ~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 92 EKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp HHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred hhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 677888888887765 77766 567777788888877777777776 56777777777665543
No 22
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.27 E-value=3.6e-12 Score=137.52 Aligned_cols=145 Identities=21% Similarity=0.215 Sum_probs=94.6
Q ss_pred cCceEEEEEEcCCCCccc-cccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhcc-c
Q 005860 491 QEKLRHSMLVLGYEASFP-ISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILK-G 568 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~-~ 568 (673)
+.+++.+.+..+.....+ ..+..+++|++|.+.++.. ....+..|.++++|+.|+|++ +.+..+|. .
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i----~~i~~~~~~~l~~L~~L~L~~-------n~l~~~~~~~ 131 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI----RTIEIGAFNGLANLNTLELFD-------NRLTTIPNGA 131 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCC----CEECGGGGTTCSSCCEEECCS-------SCCSSCCTTT
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcC----CccChhhccCCccCCEEECCC-------CcCCeeCHhH
Confidence 456777777777665544 4466778888888887753 234445677778888888887 77777665 4
Q ss_pred cccccccccceecCCCCcccch-hhhcCCCccEEEeccCCCCccccc-cccccccCCeeeccccccccccccCCCCCCCC
Q 005860 569 IEKLIHLRYLRLVGLGTEELPE-TCCELLNLQVLEIEQCTSLKRLPL-GIGKLVNLRHLTYDDSCLEFIPKGIQRLTNLR 646 (673)
Q Consensus 569 i~~L~~Lr~L~L~~~~i~~LP~-~i~~L~~L~~L~l~~c~~l~~lP~-~i~~L~~Lr~L~l~~~~l~~lP~~i~~L~~L~ 646 (673)
+..+.+|++|+|++|.+..+|. .+.++++|++|++++|+.+..+|. .+.++++|++|++++|.+..+| .+..+++|+
T Consensus 132 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~ 210 (440)
T 3zyj_A 132 FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLD 210 (440)
T ss_dssp SCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCC
T ss_pred hhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccC
Confidence 7777778888887777777664 566666777777766655666554 3566666666666666555554 233344433
Q ss_pred c
Q 005860 647 T 647 (673)
Q Consensus 647 ~ 647 (673)
.
T Consensus 211 ~ 211 (440)
T 3zyj_A 211 E 211 (440)
T ss_dssp E
T ss_pred E
Confidence 3
No 23
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.27 E-value=2.5e-12 Score=132.07 Aligned_cols=145 Identities=15% Similarity=0.135 Sum_probs=73.2
Q ss_pred CceEEEEEEcCCCC-ccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchh-hhcccc
Q 005860 492 EKLRHSMLVLGYEA-SFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTN-KILKGI 569 (673)
Q Consensus 492 ~~~r~l~l~~~~~~-~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~-~lp~~i 569 (673)
.+++++.+..+... ..|..+..+++|++|++.++.. ...+|..|..+++|++|++++ +.+. .+|..+
T Consensus 101 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l----~~~~p~~~~~l~~L~~L~L~~-------N~l~~~~p~~l 169 (313)
T 1ogq_A 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL----SGTLPPSISSLPNLVGITFDG-------NRISGAIPDSY 169 (313)
T ss_dssp TTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE----ESCCCGGGGGCTTCCEEECCS-------SCCEEECCGGG
T ss_pred CCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCcc----CCcCChHHhcCCCCCeEECcC-------CcccCcCCHHH
Confidence 34555555554443 3344455555555555555442 112333444555555555555 4443 344444
Q ss_pred cccc-ccccceecCCCCc-c-----------------------cchhhhcCCCccEEEeccCCCCccccccccccccCCe
Q 005860 570 EKLI-HLRYLRLVGLGTE-E-----------------------LPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRH 624 (673)
Q Consensus 570 ~~L~-~Lr~L~L~~~~i~-~-----------------------LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~ 624 (673)
+.+. +|++|+|++|.+. . .|..+..+++|++|++++|. +...+..+..+++|++
T Consensus 170 ~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~l~~L~~ 248 (313)
T 1ogq_A 170 GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-LAFDLGKVGLSKNLNG 248 (313)
T ss_dssp GCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE-ECCBGGGCCCCTTCCE
T ss_pred hhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc-eeeecCcccccCCCCE
Confidence 4444 4455544444433 3 34445555555555555544 4433334555666666
Q ss_pred eeccccccc-cccccCCCCCCCCcC
Q 005860 625 LTYDDSCLE-FIPKGIQRLTNLRTL 648 (673)
Q Consensus 625 L~l~~~~l~-~lP~~i~~L~~L~~L 648 (673)
|++++|.+. .+|..++.+++|+.|
T Consensus 249 L~Ls~N~l~~~~p~~l~~l~~L~~L 273 (313)
T 1ogq_A 249 LDLRNNRIYGTLPQGLTQLKFLHSL 273 (313)
T ss_dssp EECCSSCCEECCCGGGGGCTTCCEE
T ss_pred EECcCCcccCcCChHHhcCcCCCEE
Confidence 666666655 455556555555554
No 24
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.26 E-value=5.9e-12 Score=126.33 Aligned_cols=147 Identities=29% Similarity=0.418 Sum_probs=121.5
Q ss_pred cCceEEEEEEcCCCCcccccc-ccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhcc-c
Q 005860 491 QEKLRHSMLVLGYEASFPISI-FKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILK-G 568 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~-~ 568 (673)
..+++.+.+..+....++... ..+++|++|.+.++.. ....+..|..+++|+.|++++ +.+..+|+ .
T Consensus 60 l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~-------n~l~~~~~~~ 128 (270)
T 2o6q_A 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL----QALPIGVFDQLVNLAELRLDR-------NQLKSLPPRV 128 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC----CCCCTTTTTTCSSCCEEECCS-------SCCCCCCTTT
T ss_pred CCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC----CcCCHhHcccccCCCEEECCC-------CccCeeCHHH
Confidence 467899999888777776654 5689999999998863 344456678899999999999 88887765 4
Q ss_pred cccccccccceecCCCCcccchh-hhcCCCccEEEeccCCCCccccc-cccccccCCeeecccccccccccc-CCCCCCC
Q 005860 569 IEKLIHLRYLRLVGLGTEELPET-CCELLNLQVLEIEQCTSLKRLPL-GIGKLVNLRHLTYDDSCLEFIPKG-IQRLTNL 645 (673)
Q Consensus 569 i~~L~~Lr~L~L~~~~i~~LP~~-i~~L~~L~~L~l~~c~~l~~lP~-~i~~L~~Lr~L~l~~~~l~~lP~~-i~~L~~L 645 (673)
+..+++|++|+|++|.+..+|.. +..+++|++|++++|. +..+|. .+.++++|++|++++|.+..+|.. +..+++|
T Consensus 129 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 129 FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207 (270)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence 78999999999999999999865 7899999999999976 888876 488999999999999999998875 6666666
Q ss_pred CcCC
Q 005860 646 RTLS 649 (673)
Q Consensus 646 ~~L~ 649 (673)
+.|.
T Consensus 208 ~~L~ 211 (270)
T 2o6q_A 208 KMLQ 211 (270)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 6653
No 25
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.26 E-value=3.2e-12 Score=138.48 Aligned_cols=145 Identities=21% Similarity=0.235 Sum_probs=97.7
Q ss_pred cCceEEEEEEcCCCCcc-ccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccc-
Q 005860 491 QEKLRHSMLVLGYEASF-PISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKG- 568 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~- 568 (673)
+.+++.+.+..+..... +..+..+++|+.|.+.++.. ....+..|.++++|+.|+|++ +.+..+|+.
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~L~~-------n~l~~~~~~~ 142 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI----RQIEVGAFNGLASLNTLELFD-------NWLTVIPSGA 142 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC----CEECTTTTTTCTTCCEEECCS-------SCCSBCCTTT
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCcc----CCcChhhccCcccCCEEECCC-------CcCCccChhh
Confidence 45778888877776555 34566788888888887753 334455677788888888888 777776654
Q ss_pred cccccccccceecCCCCcccch-hhhcCCCccEEEeccCCCCccccc-cccccccCCeeeccccccccccccCCCCCCCC
Q 005860 569 IEKLIHLRYLRLVGLGTEELPE-TCCELLNLQVLEIEQCTSLKRLPL-GIGKLVNLRHLTYDDSCLEFIPKGIQRLTNLR 646 (673)
Q Consensus 569 i~~L~~Lr~L~L~~~~i~~LP~-~i~~L~~L~~L~l~~c~~l~~lP~-~i~~L~~Lr~L~l~~~~l~~lP~~i~~L~~L~ 646 (673)
+..+++|++|+|++|.+..+|. .+.++++|++|++++|+.+..+|. .+.++++|++|++++|.+..+| .+..+++|+
T Consensus 143 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~ 221 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLE 221 (452)
T ss_dssp SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCC
T ss_pred hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-ccccccccc
Confidence 6778888888888888777764 566677777777777666666664 3566666666666666665554 234444443
Q ss_pred c
Q 005860 647 T 647 (673)
Q Consensus 647 ~ 647 (673)
.
T Consensus 222 ~ 222 (452)
T 3zyi_A 222 E 222 (452)
T ss_dssp E
T ss_pred E
Confidence 3
No 26
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.26 E-value=8.2e-12 Score=125.41 Aligned_cols=147 Identities=27% Similarity=0.411 Sum_probs=110.6
Q ss_pred ccCceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccc-
Q 005860 490 YQEKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKG- 568 (673)
Q Consensus 490 ~~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~- 568 (673)
...+++.+.+..+....+ +.+..+++|++|.+.++.. ....+..|..++.|+.|++++ +.+..+|+.
T Consensus 61 ~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~-------n~l~~~~~~~ 128 (272)
T 3rfs_A 61 YLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQL----QSLPNGVFDKLTNLKELVLVE-------NQLQSLPDGV 128 (272)
T ss_dssp GCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCC----CCCCTTTTTTCTTCCEEECTT-------SCCCCCCTTT
T ss_pred cCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCcc----CccChhHhcCCcCCCEEECCC-------CcCCccCHHH
Confidence 356788888877766554 3566788888888888763 344555677888888888888 887777654
Q ss_pred cccccccccceecCCCCcccchh-hhcCCCccEEEeccCCCCcccccc-ccccccCCeeecccccccccccc-CCCCCCC
Q 005860 569 IEKLIHLRYLRLVGLGTEELPET-CCELLNLQVLEIEQCTSLKRLPLG-IGKLVNLRHLTYDDSCLEFIPKG-IQRLTNL 645 (673)
Q Consensus 569 i~~L~~Lr~L~L~~~~i~~LP~~-i~~L~~L~~L~l~~c~~l~~lP~~-i~~L~~Lr~L~l~~~~l~~lP~~-i~~L~~L 645 (673)
++.+++|++|+|++|.+..+|.. ++.+++|++|++++|. +..+|.. ++.+++|++|++++|.+..+|+. ++.+++|
T Consensus 129 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCC
Confidence 68888889999988888888754 5788889999998876 7777654 57888889998888888887765 4666666
Q ss_pred CcCC
Q 005860 646 RTLS 649 (673)
Q Consensus 646 ~~L~ 649 (673)
+.|.
T Consensus 208 ~~L~ 211 (272)
T 3rfs_A 208 QYIW 211 (272)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 6553
No 27
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.26 E-value=6e-12 Score=126.40 Aligned_cols=167 Identities=24% Similarity=0.309 Sum_probs=115.6
Q ss_pred cCceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccc-c
Q 005860 491 QEKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKG-I 569 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~-i 569 (673)
..+++.+.+..+.....+ .+..+++|++|.+.++... . + ..+..+++|++|++++ +.+..+|+. +
T Consensus 40 l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~----~-~-~~l~~l~~L~~L~L~~-------n~l~~~~~~~~ 105 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLH----D-I-SALKELTNLTYLILTG-------NQLQSLPNGVF 105 (272)
T ss_dssp HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCC----C-C-GGGTTCTTCCEEECTT-------SCCCCCCTTTT
T ss_pred ccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCC----C-c-hhhcCCCCCCEEECCC-------CccCccChhHh
Confidence 345666766665554433 4667888888888887641 1 2 2467888888888888 887776654 5
Q ss_pred ccccccccceecCCCCcccchh-hhcCCCccEEEeccCCCCcccccc-ccccccCCeeecccccccccccc-CCCCCCCC
Q 005860 570 EKLIHLRYLRLVGLGTEELPET-CCELLNLQVLEIEQCTSLKRLPLG-IGKLVNLRHLTYDDSCLEFIPKG-IQRLTNLR 646 (673)
Q Consensus 570 ~~L~~Lr~L~L~~~~i~~LP~~-i~~L~~L~~L~l~~c~~l~~lP~~-i~~L~~Lr~L~l~~~~l~~lP~~-i~~L~~L~ 646 (673)
+.+++|++|+|++|.+..+|.. ++.+++|++|++++|. +..+|.. ++++++|++|++++|.+..+|.. ++.+++|+
T Consensus 106 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 184 (272)
T 3rfs_A 106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK 184 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCC
Confidence 8888888888888888887754 6888888899888875 7777754 57888888888888888887765 46677777
Q ss_pred cCCeeEE--ccCCccCCCccccCCCCCC
Q 005860 647 TLSEFVV--VRGGSKYGGKACNLEGLRY 672 (673)
Q Consensus 647 ~L~~~~~--~~~~~~~~~~~~~l~~L~~ 672 (673)
.|..... ....+..+..+.+|+.|.+
T Consensus 185 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (272)
T 3rfs_A 185 DLRLYQNQLKSVPDGVFDRLTSLQYIWL 212 (272)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred EEECCCCcCCccCHHHHhCCcCCCEEEc
Confidence 6643321 1222223445566665544
No 28
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.26 E-value=2.8e-12 Score=118.74 Aligned_cols=135 Identities=22% Similarity=0.130 Sum_probs=116.5
Q ss_pred cCceEEEEEEcCCCC--ccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhh-hcc
Q 005860 491 QEKLRHSMLVLGYEA--SFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNK-ILK 567 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~--~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~-lp~ 567 (673)
+.+++++.+..+... .+|..+..+++|+.|.+.++... .. ..+..+++|+.|++++ +.+.. +|.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~----~~--~~~~~l~~L~~L~Ls~-------N~l~~~~~~ 89 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI----SV--SNLPKLPKLKKLELSE-------NRIFGGLDM 89 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC----CC--SSCCCCSSCCEEEEES-------CCCCSCCCH
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC----Ch--hhhccCCCCCEEECcC-------CcCchHHHH
Confidence 467899999888776 67777788999999999998741 22 5678899999999999 88877 677
Q ss_pred ccccccccccceecCCCCcccc--hhhhcCCCccEEEeccCCCCccccc----cccccccCCeeeccccccccccccC
Q 005860 568 GIEKLIHLRYLRLVGLGTEELP--ETCCELLNLQVLEIEQCTSLKRLPL----GIGKLVNLRHLTYDDSCLEFIPKGI 639 (673)
Q Consensus 568 ~i~~L~~Lr~L~L~~~~i~~LP--~~i~~L~~L~~L~l~~c~~l~~lP~----~i~~L~~Lr~L~l~~~~l~~lP~~i 639 (673)
.+..+++|++|+|++|.+..+| ..++.+++|++|++++|. +..+|. .+..+++|++|+++.|.+..+|.+.
T Consensus 90 ~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 166 (168)
T 2ell_A 90 LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDSD 166 (168)
T ss_dssp HHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSSS
T ss_pred HHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhhccccc
Confidence 7778999999999999999987 789999999999999987 888887 7899999999999999998888653
No 29
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.25 E-value=2.5e-11 Score=126.79 Aligned_cols=180 Identities=13% Similarity=0.151 Sum_probs=114.0
Q ss_pred cCCcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCc-----ccH
Q 005860 167 DVSEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDP-----FDE 241 (673)
Q Consensus 167 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~ 241 (673)
.+..|+||+.+++.|.+ +.. +++.|+|++|+|||||++.+.+.. .. ..+|+.+... .+.
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~----------~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~ 74 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA----------PITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLDLRKFEERNYISY 74 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS----------SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGTTCSCCCH
T ss_pred CHHHhcChHHHHHHHHH-hcC----------CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEEchhhccccCCCH
Confidence 45679999999999998 732 489999999999999999998852 21 2578887642 244
Q ss_pred HHHHHHHHHHhhC-------------C-------C---------CCcCcHHHHHHHHHHHhCCCeEEEEEcCCCCCCc--
Q 005860 242 LRIAKAIIEALEG-------------F-------V---------PTVGELNSLLESIRASLVGKKFLLILDDMWTDDY-- 290 (673)
Q Consensus 242 ~~~~~~i~~~l~~-------------~-------~---------~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~-- 290 (673)
..+...+.+.+.. . . .....+..+...+.+... ++++|||||++.-+.
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~ 153 (357)
T 2fna_A 75 KDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLR 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccC
Confidence 4455554444311 0 0 012344555555554433 499999999954221
Q ss_pred -cchhhhhhhccCCCCCeEEEEEcCChhHHHhc-----------cc-cceeecCCCCccccc------------------
Q 005860 291 -SKWEPFHYCLKNGVRGSKILVTTRKETVARMM-----------ES-IHVISIKELSEQECW------------------ 339 (673)
Q Consensus 291 -~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~-----------~~-~~~~~l~~L~~~~~~------------------ 339 (673)
..|..+...+.....+.++|+|++.......+ +. ...+++.+|+.+|+.
T Consensus 154 ~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~ 233 (357)
T 2fna_A 154 GVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDYE 233 (357)
T ss_dssp TCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCHH
T ss_pred chhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcHH
Confidence 12322222222222467899999986542211 11 257889999988765
Q ss_pred -----cCCchhhHHHHhhhhccCCCHHHH
Q 005860 340 -----CKGLPLAAKTIGSLLRFKRTREEW 363 (673)
Q Consensus 340 -----c~GlPLai~~~~~~L~~~~~~~~w 363 (673)
|+|+|+++..++..+....+...|
T Consensus 234 ~i~~~t~G~P~~l~~~~~~~~~~~~~~~~ 262 (357)
T 2fna_A 234 VVYEKIGGIPGWLTYFGFIYLDNKNLDFA 262 (357)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHccccchHHH
Confidence 999999999998876433333334
No 30
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.25 E-value=3.9e-12 Score=130.18 Aligned_cols=143 Identities=17% Similarity=0.228 Sum_probs=118.8
Q ss_pred ccCceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhcccc
Q 005860 490 YQEKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGI 569 (673)
Q Consensus 490 ~~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i 569 (673)
...+++.+.+..+....++ .+..+++|++|.+.++... . ++. +..+++|+.|++++ +.+..++. +
T Consensus 83 ~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~----~-~~~-l~~l~~L~~L~l~~-------n~l~~~~~-l 147 (308)
T 1h6u_A 83 NLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQIT----D-VTP-LAGLSNLQVLYLDL-------NQITNISP-L 147 (308)
T ss_dssp TCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCC----C-CGG-GTTCTTCCEEECCS-------SCCCCCGG-G
T ss_pred cCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCC----C-chh-hcCCCCCCEEECCC-------CccCcCcc-c
Confidence 3567899999888776654 5778999999999988741 2 222 78899999999999 88887776 8
Q ss_pred ccccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccccccccCCCCCCCCcCC
Q 005860 570 EKLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKGIQRLTNLRTLS 649 (673)
Q Consensus 570 ~~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~i~~L~~L~~L~ 649 (673)
+.+++|++|+|++|.+..+|. +..+++|++|++++|. +..+|. +..+++|++|++++|.+..+|+ +..+++|+.|.
T Consensus 148 ~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~ 223 (308)
T 1h6u_A 148 AGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVT 223 (308)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEE
T ss_pred cCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc-cCcChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEE
Confidence 899999999999999999888 8999999999999976 888885 8899999999999999998874 77788887775
Q ss_pred ee
Q 005860 650 EF 651 (673)
Q Consensus 650 ~~ 651 (673)
.-
T Consensus 224 l~ 225 (308)
T 1h6u_A 224 LT 225 (308)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 31
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.25 E-value=1.6e-12 Score=117.66 Aligned_cols=125 Identities=22% Similarity=0.235 Sum_probs=101.1
Q ss_pred ccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccccccccccccceecCCCCcc-cchhh
Q 005860 514 AKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIEKLIHLRYLRLVGLGTEE-LPETC 592 (673)
Q Consensus 514 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~-LP~~i 592 (673)
.++|+.|.+.++... ...++..+..+++|+.|++++ +.+..+ ..++.+++|++|+|++|.+.. +|..+
T Consensus 16 ~~~l~~L~l~~n~l~---~~~~~~~~~~l~~L~~L~l~~-------n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 84 (149)
T 2je0_A 16 PSDVKELVLDNSRSN---EGKLEGLTDEFEELEFLSTIN-------VGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLA 84 (149)
T ss_dssp GGGCSEEECTTCBCB---TTBCCSCCTTCTTCCEEECTT-------SCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHH
T ss_pred CccCeEEEccCCcCC---hhHHHHHHhhcCCCcEEECcC-------CCCCCc-hhhhcCCCCCEEECCCCcccchHHHHh
Confidence 467778887777631 023455667888999999999 887777 778899999999999999877 88888
Q ss_pred hcCCCccEEEeccCCCCcccc--ccccccccCCeeeccccccccccc----cCCCCCCCCcCCe
Q 005860 593 CELLNLQVLEIEQCTSLKRLP--LGIGKLVNLRHLTYDDSCLEFIPK----GIQRLTNLRTLSE 650 (673)
Q Consensus 593 ~~L~~L~~L~l~~c~~l~~lP--~~i~~L~~Lr~L~l~~~~l~~lP~----~i~~L~~L~~L~~ 650 (673)
+.+++|++|++++|. +..+| ..++.+++|++|++++|.+..+|. .++.+++|+.|+.
T Consensus 85 ~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 85 EKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp HHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred hhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 889999999999876 88765 788999999999999999988876 5777888887764
No 32
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.25 E-value=1.5e-12 Score=147.13 Aligned_cols=108 Identities=15% Similarity=0.200 Sum_probs=87.1
Q ss_pred HHHHhhhCCccceeeeccccccccccchhh------------------hccccc--cccccccceecCCC-Ccccchhhh
Q 005860 535 LQSLFDQLKCLRALRIATLMNTWDVNSTNK------------------ILKGIE--KLIHLRYLRLVGLG-TEELPETCC 593 (673)
Q Consensus 535 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~------------------lp~~i~--~L~~Lr~L~L~~~~-i~~LP~~i~ 593 (673)
+|..+.++++|++|+|++ +.+.. +|+.++ ++++|++|+|++|. ...+|..++
T Consensus 198 ip~~l~~l~~L~~L~Ls~-------n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGN-------SPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp ECGGGGGCTTCCEEEEES-------CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred CCHHHhcccCCCEEECcC-------CccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 556678888888888888 77766 888888 88888888888888 667888888
Q ss_pred cCCCccEEEeccCCCCc--ccccccccc------ccCCeeeccccccccccc--cCCCCCCCCcCC
Q 005860 594 ELLNLQVLEIEQCTSLK--RLPLGIGKL------VNLRHLTYDDSCLEFIPK--GIQRLTNLRTLS 649 (673)
Q Consensus 594 ~L~~L~~L~l~~c~~l~--~lP~~i~~L------~~Lr~L~l~~~~l~~lP~--~i~~L~~L~~L~ 649 (673)
+|++|++|++++|..+. .+|..+++| ++|++|++++|.+..+|. .++++++|++|.
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~ 336 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLE 336 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEE
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEe
Confidence 88888888888876354 588888776 888888888888888887 788888777764
No 33
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.24 E-value=3.7e-12 Score=130.31 Aligned_cols=148 Identities=17% Similarity=0.114 Sum_probs=75.8
Q ss_pred cCceEEEEEEcCCCCccccc-cccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhcccc
Q 005860 491 QEKLRHSMLVLGYEASFPIS-IFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGI 569 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i 569 (673)
+.+++++.+..+....++.. +..+++|++|.+.++.... ....+..+..+++|++|++++ +.+..+|..+
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~~~L~~L~Ls~-------n~i~~l~~~~ 97 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF--KGCCSQSDFGTTSLKYLDLSF-------NGVITMSSNF 97 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCE--EEEEEHHHHSCSCCCEEECCS-------CSEEEEEEEE
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCc--ccCcccccccccccCEEECCC-------CccccChhhc
Confidence 45677777777766666554 4567778888777765310 001122334566666666666 5555555555
Q ss_pred ccccccccceecCCCCcccch--hhhcCCCccEEEeccCCCCccccccccccccCCeeecccccccc--ccccCCCCCCC
Q 005860 570 EKLIHLRYLRLVGLGTEELPE--TCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEF--IPKGIQRLTNL 645 (673)
Q Consensus 570 ~~L~~Lr~L~L~~~~i~~LP~--~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~--lP~~i~~L~~L 645 (673)
..+++|++|++++|.+..+|. .+..+++|++|++++|..-...|..+..+++|++|++++|.+.. +|..++.+++|
T Consensus 98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 177 (306)
T 2z66_A 98 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177 (306)
T ss_dssp ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence 555555555555555554442 44455555555555443111222334444444444444444432 33334433333
Q ss_pred Cc
Q 005860 646 RT 647 (673)
Q Consensus 646 ~~ 647 (673)
+.
T Consensus 178 ~~ 179 (306)
T 2z66_A 178 TF 179 (306)
T ss_dssp CE
T ss_pred CE
Confidence 33
No 34
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.24 E-value=4.1e-12 Score=146.72 Aligned_cols=139 Identities=16% Similarity=0.230 Sum_probs=73.3
Q ss_pred CceEEEEEEcCCC-Cccccccccccccchhhhccch-hhhhhhhhHHHHhh-------hCCccceeeeccccccccccch
Q 005860 492 EKLRHSMLVLGYE-ASFPISIFKAKNLRSLFINNTL-IQVSLTHVLQSLFD-------QLKCLRALRIATLMNTWDVNST 562 (673)
Q Consensus 492 ~~~r~l~l~~~~~-~~~~~~~~~~~~Lr~L~l~~~~-~~~~~~~~~~~~~~-------~l~~L~~L~L~~~~~~~~~~~~ 562 (673)
.+++.+.+..+.. ..+|..+.++++|++|.+.++. ... ..+|..+. .+++|+.|++++ +.+
T Consensus 491 ~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg---~~iP~~i~~L~~~~~~l~~L~~L~Ls~-------N~L 560 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA---AQLKADWTRLADDEDTGPKIQIFYMGY-------NNL 560 (876)
T ss_dssp TTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCH---HHHHHHHHHHHHCTTTTTTCCEEECCS-------SCC
T ss_pred CCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCccc---ccchHHHHhhhhcccccCCccEEEeeC-------CcC
Confidence 4455555555432 3344445555555555555543 211 01222222 223556666655 555
Q ss_pred hhhcc--ccccccccccceecCCCCcccchhhhcCCCccEEEeccCCCCcccccccccccc-CCeeeccccccccccccC
Q 005860 563 NKILK--GIEKLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVN-LRHLTYDDSCLEFIPKGI 639 (673)
Q Consensus 563 ~~lp~--~i~~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~-Lr~L~l~~~~l~~lP~~i 639 (673)
..+|. .++.+++|++|+|++|.+..+| .++++++|+.|+|++|. +..+|..++++++ |++|++++|.+..+|..+
T Consensus 561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~ 638 (876)
T 4ecn_A 561 EEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIF 638 (876)
T ss_dssp CBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSCCCSCCSCC
T ss_pred CccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCCCCcCchhh
Confidence 55555 5666666666666666655555 55666666666666554 5556655666665 666666666665565544
Q ss_pred CCC
Q 005860 640 QRL 642 (673)
Q Consensus 640 ~~L 642 (673)
+.+
T Consensus 639 ~~~ 641 (876)
T 4ecn_A 639 NAK 641 (876)
T ss_dssp CTT
T ss_pred hcc
Confidence 443
No 35
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.24 E-value=3.5e-12 Score=119.06 Aligned_cols=130 Identities=20% Similarity=0.133 Sum_probs=102.0
Q ss_pred cccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccccccccccccceecCCCCcccch
Q 005860 511 IFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIEKLIHLRYLRLVGLGTEELPE 590 (673)
Q Consensus 511 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~ 590 (673)
+..+.+|+.|.+.++... . ++.+....++|++|++++ +.+..+ +.++.+++|++|+|++|.+..+|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~----~-i~~~~~~~~~L~~L~Ls~-------N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~ 81 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP----V-IENLGATLDQFDAIDFSD-------NEIRKL-DGFPLLRRLKTLLVNNNRICRIGE 81 (176)
T ss_dssp EECTTSCEEEECTTSCCC----S-CCCGGGGTTCCSEEECCS-------SCCCEE-CCCCCCSSCCEEECCSSCCCEECS
T ss_pred cCCcCCceEEEeeCCCCc----h-hHHhhhcCCCCCEEECCC-------CCCCcc-cccccCCCCCEEECCCCcccccCc
Confidence 446677888888877641 1 233333344899999998 887777 678888999999999999888886
Q ss_pred hh-hcCCCccEEEeccCCCCccccc--cccccccCCeeecccccccccccc----CCCCCCCCcCCeeEEc
Q 005860 591 TC-CELLNLQVLEIEQCTSLKRLPL--GIGKLVNLRHLTYDDSCLEFIPKG----IQRLTNLRTLSEFVVV 654 (673)
Q Consensus 591 ~i-~~L~~L~~L~l~~c~~l~~lP~--~i~~L~~Lr~L~l~~~~l~~lP~~----i~~L~~L~~L~~~~~~ 654 (673)
.+ +.+++|++|++++|. +..+|. .++.+++|++|++++|.+..+|.. ++.+++|+.|+.-.+.
T Consensus 82 ~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred chhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 65 889999999999876 888887 788899999999999988888875 7888888888776654
No 36
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.24 E-value=5.9e-12 Score=127.74 Aligned_cols=144 Identities=22% Similarity=0.310 Sum_probs=118.7
Q ss_pred ccCceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhcccc
Q 005860 490 YQEKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGI 569 (673)
Q Consensus 490 ~~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i 569 (673)
...+++.+.+..+.....++ +..+++|+.|.+.++... . ++ .+..+++|+.|++++ +.+..+ +.+
T Consensus 66 ~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~----~-~~-~l~~l~~L~~L~L~~-------n~i~~~-~~l 130 (291)
T 1h6t_A 66 YLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVK----D-LS-SLKDLKKLKSLSLEH-------NGISDI-NGL 130 (291)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC----C-GG-GGTTCTTCCEEECTT-------SCCCCC-GGG
T ss_pred cCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCC----C-Ch-hhccCCCCCEEECCC-------CcCCCC-hhh
Confidence 35678999998887776665 778999999999988741 1 22 378899999999999 887776 468
Q ss_pred ccccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccccccccCCCCCCCCcCC
Q 005860 570 EKLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKGIQRLTNLRTLS 649 (673)
Q Consensus 570 ~~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~i~~L~~L~~L~ 649 (673)
..+++|++|+|++|.+..+ +.++.+++|++|++++|. +..+|. +..+++|++|++++|.++.+|. +..+++|+.|.
T Consensus 131 ~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~ 206 (291)
T 1h6t_A 131 VHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLE 206 (291)
T ss_dssp GGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEE
T ss_pred cCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh-hcCCCccCEEECCCCcCCCChh-hccCCCCCEEE
Confidence 8899999999999998888 578999999999999976 888876 8999999999999999998874 77888888776
Q ss_pred eeE
Q 005860 650 EFV 652 (673)
Q Consensus 650 ~~~ 652 (673)
...
T Consensus 207 l~~ 209 (291)
T 1h6t_A 207 LFS 209 (291)
T ss_dssp EEE
T ss_pred CcC
Confidence 544
No 37
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.23 E-value=3.9e-12 Score=146.89 Aligned_cols=107 Identities=20% Similarity=0.265 Sum_probs=64.8
Q ss_pred HHHHhhhCCccceeeeccccccccccchhh------------------hccccc--cccccccceecCCC-Ccccchhhh
Q 005860 535 LQSLFDQLKCLRALRIATLMNTWDVNSTNK------------------ILKGIE--KLIHLRYLRLVGLG-TEELPETCC 593 (673)
Q Consensus 535 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~------------------lp~~i~--~L~~Lr~L~L~~~~-i~~LP~~i~ 593 (673)
+|..|.++++|+.|+|++ +.+.. +|+.++ .|++|++|+|++|. ...+|..++
T Consensus 440 IP~~l~~L~~L~~L~Ls~-------N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFAN-------SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp ECGGGGGCTTCCEEEEES-------CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred hhHHHhcCCCCCEEECcC-------CcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 344566666666666666 55554 666666 66666666666665 555666666
Q ss_pred cCCCccEEEeccCCCCc--cccccccccc-------cCCeeeccccccccccc--cCCCCCCCCcC
Q 005860 594 ELLNLQVLEIEQCTSLK--RLPLGIGKLV-------NLRHLTYDDSCLEFIPK--GIQRLTNLRTL 648 (673)
Q Consensus 594 ~L~~L~~L~l~~c~~l~--~lP~~i~~L~-------~Lr~L~l~~~~l~~lP~--~i~~L~~L~~L 648 (673)
+|++|++|+|++|..+. .+|..++++. +|++|++++|.+..+|. .++++++|+.|
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L 578 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLL 578 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEE
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEE
Confidence 66666666666654243 3565555554 66666666666666665 55555555554
No 38
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.23 E-value=7.3e-12 Score=121.42 Aligned_cols=121 Identities=25% Similarity=0.347 Sum_probs=61.8
Q ss_pred cccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhh-ccccccccccccceecCCCCcccchh-h
Q 005860 515 KNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKI-LKGIEKLIHLRYLRLVGLGTEELPET-C 592 (673)
Q Consensus 515 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~LP~~-i 592 (673)
++|+.|.+.++.+ ....+..|..+++|+.|+|++ +.+..+ |..+..+.+|++|+|++|.+..+|.. +
T Consensus 32 ~~l~~L~l~~n~i----~~i~~~~~~~l~~L~~L~Ls~-------N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f 100 (220)
T 2v9t_B 32 ETITEIRLEQNTI----KVIPPGAFSPYKKLRRIDLSN-------NQISELAPDAFQGLRSLNSLVLYGNKITELPKSLF 100 (220)
T ss_dssp TTCCEEECCSSCC----CEECTTSSTTCTTCCEEECCS-------SCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTT
T ss_pred cCCCEEECCCCcC----CCcCHhHhhCCCCCCEEECCC-------CcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHc
Confidence 3455555555442 122233445555555555555 554444 44555555555555555555555543 3
Q ss_pred hcCCCccEEEeccCCCCccc-cccccccccCCeeecccccccccccc-CCCCCCCCc
Q 005860 593 CELLNLQVLEIEQCTSLKRL-PLGIGKLVNLRHLTYDDSCLEFIPKG-IQRLTNLRT 647 (673)
Q Consensus 593 ~~L~~L~~L~l~~c~~l~~l-P~~i~~L~~Lr~L~l~~~~l~~lP~~-i~~L~~L~~ 647 (673)
..+++|++|+|++|. +..+ |..+..+++|++|++++|.+..+|.. +..+++|++
T Consensus 101 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 156 (220)
T 2v9t_B 101 EGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQT 156 (220)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCE
Confidence 455555555555544 4444 33455555555555555555555543 444444443
No 39
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.22 E-value=9.5e-12 Score=120.61 Aligned_cols=102 Identities=21% Similarity=0.253 Sum_probs=53.9
Q ss_pred hhhCCccceeeeccccccccccchhhhcc-ccccccccccceecCCCCcccch-hhhcCCCccEEEeccCCCCccc-ccc
Q 005860 539 FDQLKCLRALRIATLMNTWDVNSTNKILK-GIEKLIHLRYLRLVGLGTEELPE-TCCELLNLQVLEIEQCTSLKRL-PLG 615 (673)
Q Consensus 539 ~~~l~~L~~L~L~~~~~~~~~~~~~~lp~-~i~~L~~Lr~L~L~~~~i~~LP~-~i~~L~~L~~L~l~~c~~l~~l-P~~ 615 (673)
|..+++|+.|++++ +.+..+++ .+..+.+|++|+|++|.+..+|. .+..+++|++|+|++|. +..+ |..
T Consensus 53 ~~~l~~L~~L~L~~-------N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~ 124 (220)
T 2v70_A 53 FKKLPQLRKINFSN-------NKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDS 124 (220)
T ss_dssp GGGCTTCCEEECCS-------SCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTS
T ss_pred hccCCCCCEEECCC-------CcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhH
Confidence 45555555555555 55554443 45555555555555555555543 25555555555555544 4444 344
Q ss_pred ccccccCCeeeccccccccc-cccCCCCCCCCcC
Q 005860 616 IGKLVNLRHLTYDDSCLEFI-PKGIQRLTNLRTL 648 (673)
Q Consensus 616 i~~L~~Lr~L~l~~~~l~~l-P~~i~~L~~L~~L 648 (673)
+..+++|++|++++|.++.+ |..++.+++|++|
T Consensus 125 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 125 FIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp STTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred cCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence 55555555555555555555 3334444444443
No 40
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.22 E-value=4.1e-12 Score=143.54 Aligned_cols=138 Identities=14% Similarity=0.232 Sum_probs=78.8
Q ss_pred CceEEEEEEcCCC-Cccccccccccccchhhhccch-hhhhhhh-hHHHHhhhC------Cccceeeeccccccccccch
Q 005860 492 EKLRHSMLVLGYE-ASFPISIFKAKNLRSLFINNTL-IQVSLTH-VLQSLFDQL------KCLRALRIATLMNTWDVNST 562 (673)
Q Consensus 492 ~~~r~l~l~~~~~-~~~~~~~~~~~~Lr~L~l~~~~-~~~~~~~-~~~~~~~~l------~~L~~L~L~~~~~~~~~~~~ 562 (673)
.+++.+.+..+.. ..+|..+.++++|++|.+.++. . .. .+|..+..+ ++|++|++++ +.+
T Consensus 249 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l----~~~~lp~~~~~L~~~~~l~~L~~L~L~~-------n~l 317 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI----SGEQLKDDWQALADAPVGEKIQIIYIGY-------NNL 317 (636)
T ss_dssp TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS----CHHHHHHHHHHHHHSGGGGTCCEEECCS-------SCC
T ss_pred CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC----ccccchHHHHhhhccccCCCCCEEECCC-------CcC
Confidence 4455555555543 3344455556666666665553 2 11 233333333 5666666666 555
Q ss_pred hhhcc--ccccccccccceecCCCCc-ccchhhhcCCCccEEEeccCCCCcccccccccccc-CCeeecccccccccccc
Q 005860 563 NKILK--GIEKLIHLRYLRLVGLGTE-ELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVN-LRHLTYDDSCLEFIPKG 638 (673)
Q Consensus 563 ~~lp~--~i~~L~~Lr~L~L~~~~i~-~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~-Lr~L~l~~~~l~~lP~~ 638 (673)
..+|. .++.+++|++|+|++|.+. .+| .++.+++|++|++++|. +..+|..++++++ |++|++++|.+..+|..
T Consensus 318 ~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~ 395 (636)
T 4eco_A 318 KTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLKYIPNI 395 (636)
T ss_dssp SSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCSSCCSC
T ss_pred CccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCcccchh
Confidence 56665 5666666666666666655 666 56666666666666654 5566666666666 66666666666666655
Q ss_pred CCCC
Q 005860 639 IQRL 642 (673)
Q Consensus 639 i~~L 642 (673)
++.+
T Consensus 396 ~~~~ 399 (636)
T 4eco_A 396 FDAK 399 (636)
T ss_dssp CCTT
T ss_pred hhhc
Confidence 5443
No 41
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.20 E-value=4.3e-12 Score=132.69 Aligned_cols=147 Identities=22% Similarity=0.314 Sum_probs=106.5
Q ss_pred cCceEEEEEEcCCCCcccc-ccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccc-
Q 005860 491 QEKLRHSMLVLGYEASFPI-SIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKG- 568 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~- 568 (673)
..+++.+.+..+.....++ .+..+++|++|.+.++.. ....+..|.++++|++|++++ +.+..+|..
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~Ls~-------n~l~~~~~~~ 119 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI----NTIEEDSFSSLGSLEHLDLSY-------NYLSNLSSSW 119 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC----CEECTTTTTTCTTCCEEECCS-------SCCSSCCHHH
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc----CccCHhhcCCCCCCCEEECCC-------CcCCcCCHhH
Confidence 3567888887777666554 566788888888887753 234455677788888888888 777777665
Q ss_pred cccccccccceecCCCCcccch--hhhcCCCccEEEeccCCCCcccc-ccccccccCCeeeccccccccc-cccCCCCCC
Q 005860 569 IEKLIHLRYLRLVGLGTEELPE--TCCELLNLQVLEIEQCTSLKRLP-LGIGKLVNLRHLTYDDSCLEFI-PKGIQRLTN 644 (673)
Q Consensus 569 i~~L~~Lr~L~L~~~~i~~LP~--~i~~L~~L~~L~l~~c~~l~~lP-~~i~~L~~Lr~L~l~~~~l~~l-P~~i~~L~~ 644 (673)
++.+++|++|+|++|.+..+|. .+.++++|++|++++|..+..+| ..++++++|++|++++|.+..+ |..++++++
T Consensus 120 ~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 199 (353)
T 2z80_A 120 FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQN 199 (353)
T ss_dssp HTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred hCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcccc
Confidence 7778888888888888878876 67778888888888775566664 4677888888888877777665 555666666
Q ss_pred CCcC
Q 005860 645 LRTL 648 (673)
Q Consensus 645 L~~L 648 (673)
|++|
T Consensus 200 L~~L 203 (353)
T 2z80_A 200 VSHL 203 (353)
T ss_dssp EEEE
T ss_pred CCee
Confidence 6554
No 42
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.20 E-value=1.2e-11 Score=125.28 Aligned_cols=145 Identities=23% Similarity=0.226 Sum_probs=118.7
Q ss_pred cCceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhc-ccc
Q 005860 491 QEKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKIL-KGI 569 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp-~~i 569 (673)
..+++.+.+..+....++.. ..+++|++|.+.++.. ..+|..+..++.|+.|++++ +.+..+| ..+
T Consensus 54 l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l-----~~l~~~~~~l~~L~~L~l~~-------N~l~~l~~~~~ 120 (290)
T 1p9a_G 54 YTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQL-----QSLPLLGQTLPALTVLDVSF-------NRLTSLPLGAL 120 (290)
T ss_dssp CTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCC-----SSCCCCTTTCTTCCEEECCS-------SCCCCCCSSTT
T ss_pred CCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcC-----CcCchhhccCCCCCEEECCC-------CcCcccCHHHH
Confidence 45788888888777665543 6788999999998874 23455677889999999999 8888887 468
Q ss_pred ccccccccceecCCCCcccchh-hhcCCCccEEEeccCCCCcccccc-ccccccCCeeeccccccccccccCCCCCCCCc
Q 005860 570 EKLIHLRYLRLVGLGTEELPET-CCELLNLQVLEIEQCTSLKRLPLG-IGKLVNLRHLTYDDSCLEFIPKGIQRLTNLRT 647 (673)
Q Consensus 570 ~~L~~Lr~L~L~~~~i~~LP~~-i~~L~~L~~L~l~~c~~l~~lP~~-i~~L~~Lr~L~l~~~~l~~lP~~i~~L~~L~~ 647 (673)
..+++|++|+|++|.+..+|.. +..+++|+.|++++|. +..+|.. +.++++|++|++++|.+..+|.++..+.+|+.
T Consensus 121 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~ 199 (290)
T 1p9a_G 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPF 199 (290)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSE
T ss_pred cCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCe
Confidence 8999999999999998888865 5789999999999876 8888875 47899999999999999999998888777776
Q ss_pred CC
Q 005860 648 LS 649 (673)
Q Consensus 648 L~ 649 (673)
|.
T Consensus 200 l~ 201 (290)
T 1p9a_G 200 AF 201 (290)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 43
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.20 E-value=1.1e-11 Score=133.70 Aligned_cols=168 Identities=21% Similarity=0.278 Sum_probs=95.2
Q ss_pred CceEEEEEEcCCCCcccc-ccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccc-hhhhcc-c
Q 005860 492 EKLRHSMLVLGYEASFPI-SIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNS-TNKILK-G 568 (673)
Q Consensus 492 ~~~r~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~lp~-~ 568 (673)
.+++.+.+..+....+++ .+..+++|++|.+.++.. ....+..|.++++|+.|++++ +. +..++. .
T Consensus 112 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i----~~~~~~~~~~l~~L~~L~l~~-------~~~l~~i~~~~ 180 (440)
T 3zyj_A 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI----ESIPSYAFNRIPSLRRLDLGE-------LKRLSYISEGA 180 (440)
T ss_dssp SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCC----CEECTTTTTTCTTCCEEECCC-------CTTCCEECTTT
T ss_pred ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcc----cccCHHHhhhCcccCEeCCCC-------CCCcceeCcch
Confidence 455566665555544443 244556666666665542 223334455666666666665 33 344443 4
Q ss_pred cccccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccc-cccccccccCCeeeccccccccccc-cCCCCCCCC
Q 005860 569 IEKLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRL-PLGIGKLVNLRHLTYDDSCLEFIPK-GIQRLTNLR 646 (673)
Q Consensus 569 i~~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~l-P~~i~~L~~Lr~L~l~~~~l~~lP~-~i~~L~~L~ 646 (673)
+..+.+|++|+|++|.+..+|. +..+++|++|+|++|. +..+ |..+.++++|++|++++|.+..++. .+.++++|+
T Consensus 181 ~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 258 (440)
T 3zyj_A 181 FEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV 258 (440)
T ss_dssp TTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCC
T ss_pred hhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCc-cCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCC
Confidence 6667777777777777777764 6677777777777765 5555 5567777777777777777776643 355555555
Q ss_pred cCCeeE--EccCCccCCCccccCCCCCC
Q 005860 647 TLSEFV--VVRGGSKYGGKACNLEGLRY 672 (673)
Q Consensus 647 ~L~~~~--~~~~~~~~~~~~~~l~~L~~ 672 (673)
.|+.-. +.......+..+.+|+.|.+
T Consensus 259 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L 286 (440)
T 3zyj_A 259 EINLAHNNLTLLPHDLFTPLHHLERIHL 286 (440)
T ss_dssp EEECTTSCCCCCCTTTTSSCTTCCEEEC
T ss_pred EEECCCCCCCccChhHhccccCCCEEEc
Confidence 542211 11112223445556655544
No 44
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.20 E-value=9.4e-12 Score=125.23 Aligned_cols=144 Identities=19% Similarity=0.215 Sum_probs=88.1
Q ss_pred cCceEEEEEEcCCCCcccc-ccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhc-cc
Q 005860 491 QEKLRHSMLVLGYEASFPI-SIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKIL-KG 568 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp-~~ 568 (673)
+..++++.+..+.....++ .+..+++|++|.+.++.. ....+..|..+++|+.|++++ +.+..++ ..
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~L~~-------n~l~~~~~~~ 95 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI----QTIEDGAYQSLSHLSTLILTG-------NPIQSLALGA 95 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCC----CEECTTTTTTCTTCCEEECTT-------CCCCEECTTT
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcC----CccCHHHccCCcCCCEEECCC-------CccCccChhh
Confidence 3456777776666555444 455677777777776652 233344566677777777777 6655544 45
Q ss_pred cccccccccceecCCCCcccch-hhhcCCCccEEEeccCCCCcc--ccccccccccCCeeeccccccccccc-cCCCCCC
Q 005860 569 IEKLIHLRYLRLVGLGTEELPE-TCCELLNLQVLEIEQCTSLKR--LPLGIGKLVNLRHLTYDDSCLEFIPK-GIQRLTN 644 (673)
Q Consensus 569 i~~L~~Lr~L~L~~~~i~~LP~-~i~~L~~L~~L~l~~c~~l~~--lP~~i~~L~~Lr~L~l~~~~l~~lP~-~i~~L~~ 644 (673)
+..+.+|++|++++|.+..+|. .++.+++|++|++++|. +.. +|..++++++|++|++++|.+..+|. .+..+++
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 174 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhh
Confidence 6666677777776666666654 56666677777776654 544 56666666677777666666665542 3444444
Q ss_pred CC
Q 005860 645 LR 646 (673)
Q Consensus 645 L~ 646 (673)
|+
T Consensus 175 L~ 176 (276)
T 2z62_A 175 MP 176 (276)
T ss_dssp CT
T ss_pred cc
Confidence 44
No 45
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.20 E-value=9e-12 Score=138.89 Aligned_cols=142 Identities=22% Similarity=0.296 Sum_probs=114.8
Q ss_pred ccCceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhcccc
Q 005860 490 YQEKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGI 569 (673)
Q Consensus 490 ~~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i 569 (673)
...+++.+.+..+....+++ +..+++|+.|.+.++... . ++ .+..+++|+.|+|++ +.+..++ .+
T Consensus 63 ~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~----~-l~-~l~~l~~L~~L~Ls~-------N~l~~l~-~l 127 (605)
T 1m9s_A 63 YLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIK----D-LS-SLKDLKKLKSLSLEH-------NGISDIN-GL 127 (605)
T ss_dssp GCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCC----C-CT-TSTTCTTCCEEECTT-------SCCCCCG-GG
T ss_pred cCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCC----C-Ch-hhccCCCCCEEEecC-------CCCCCCc-cc
Confidence 35678888888887766655 778899999999888641 1 22 467889999999999 8877764 58
Q ss_pred ccccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccccccccCCCCCCCCcCC
Q 005860 570 EKLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKGIQRLTNLRTLS 649 (673)
Q Consensus 570 ~~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~i~~L~~L~~L~ 649 (673)
..|++|++|+|++|.+..+ +.++.|++|+.|+|++|. +..+|. +..|++|++|++++|.+..+| .+..|++|+.|.
T Consensus 128 ~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~ 203 (605)
T 1m9s_A 128 VHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLE 203 (605)
T ss_dssp GGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEE
T ss_pred cCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEE
Confidence 8899999999999998888 568999999999999876 777765 889999999999999998885 577788887764
Q ss_pred e
Q 005860 650 E 650 (673)
Q Consensus 650 ~ 650 (673)
.
T Consensus 204 L 204 (605)
T 1m9s_A 204 L 204 (605)
T ss_dssp C
T ss_pred c
Confidence 3
No 46
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.19 E-value=3.3e-11 Score=122.17 Aligned_cols=128 Identities=21% Similarity=0.197 Sum_probs=72.4
Q ss_pred cCceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccccc
Q 005860 491 QEKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIE 570 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~ 570 (673)
..+++.+.+..+....++ .+..+++|++|.+.++... . + ..+..+++|+.|++++ +.+..+ +.++
T Consensus 89 l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~i~----~-~-~~l~~l~~L~~L~l~~-------n~l~~~-~~l~ 153 (291)
T 1h6t_A 89 LKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNGIS----D-I-NGLVHLPQLESLYLGN-------NKITDI-TVLS 153 (291)
T ss_dssp CTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSCCC----C-C-GGGGGCTTCCEEECCS-------SCCCCC-GGGG
T ss_pred CCCCCEEECCCCcCCCCh-hhccCCCCCEEECCCCcCC----C-C-hhhcCCCCCCEEEccC-------CcCCcc-hhhc
Confidence 345566666555544433 2555666666666655431 1 1 2345566666666666 555554 4556
Q ss_pred cccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeecccccccccc
Q 005860 571 KLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIP 636 (673)
Q Consensus 571 ~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP 636 (673)
.+++|++|+|++|.+..+|+ +..+++|++|++++|. +..+| .+..+++|+.|++++|.+...|
T Consensus 154 ~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~-i~~l~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 154 RLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp GCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBCG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred cCCCCCEEEccCCccccchh-hcCCCccCEEECCCCc-CCCCh-hhccCCCCCEEECcCCcccCCc
Confidence 66666666666666666655 6666666666666654 55555 3566666666666666555443
No 47
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.19 E-value=9.6e-12 Score=127.18 Aligned_cols=131 Identities=24% Similarity=0.278 Sum_probs=68.7
Q ss_pred CceEEEEEEcCCCCcccc--ccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhh--hcc
Q 005860 492 EKLRHSMLVLGYEASFPI--SIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNK--ILK 567 (673)
Q Consensus 492 ~~~r~l~l~~~~~~~~~~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~--lp~ 567 (673)
.+++++.+..+.....+. .+..+++|++|.+.++.. ....+..|..+++|+.|++++ +.+.. +|.
T Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~-------n~l~~~~~~~ 169 (306)
T 2z66_A 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT----RVAFNGIFNGLSSLEVLKMAG-------NSFQENFLPD 169 (306)
T ss_dssp TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCC----EECSTTTTTTCTTCCEEECTT-------CEEGGGEECS
T ss_pred CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcC----CccchhhcccCcCCCEEECCC-------Cccccccchh
Confidence 344555544443333322 344455555555555432 122333445555666666655 55443 455
Q ss_pred ccccccccccceecCCCCccc-chhhhcCCCccEEEeccCCCCccccc-cccccccCCeeecccccccc
Q 005860 568 GIEKLIHLRYLRLVGLGTEEL-PETCCELLNLQVLEIEQCTSLKRLPL-GIGKLVNLRHLTYDDSCLEF 634 (673)
Q Consensus 568 ~i~~L~~Lr~L~L~~~~i~~L-P~~i~~L~~L~~L~l~~c~~l~~lP~-~i~~L~~Lr~L~l~~~~l~~ 634 (673)
.+..+++|++|+|++|.+..+ |..+..+++|++|++++|. +..+|. .+..+++|++|++++|.+..
T Consensus 170 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcc
Confidence 566666666666666665555 4455566666666666554 444443 45556666666666665554
No 48
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.18 E-value=1.1e-11 Score=139.44 Aligned_cols=146 Identities=18% Similarity=0.174 Sum_probs=121.7
Q ss_pred ccCceEEEEEEcCCCCcccc-ccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhh-cc
Q 005860 490 YQEKLRHSMLVLGYEASFPI-SIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKI-LK 567 (673)
Q Consensus 490 ~~~~~r~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l-p~ 567 (673)
.+..++++.+..+.....++ .+.++++|++|++.++.. ....+..|.++++|++|++++ +.+..+ |.
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l----~~i~~~~~~~l~~L~~L~Ls~-------n~l~~~~p~ 98 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI----ETIEDKAWHGLHHLSNLILTG-------NPIQSFSPG 98 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC----CEECTTTTTTCTTCCEEECTT-------CCCCCCCTT
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcc----cccCHHHhhchhhcCEeECCC-------CcccccChh
Confidence 34678999998888766654 677899999999998863 345566788999999999999 888776 77
Q ss_pred ccccccccccceecCCCCcccc-hhhhcCCCccEEEeccCCCCc--cccccccccccCCeeeccccccccccc-cCCCCC
Q 005860 568 GIEKLIHLRYLRLVGLGTEELP-ETCCELLNLQVLEIEQCTSLK--RLPLGIGKLVNLRHLTYDDSCLEFIPK-GIQRLT 643 (673)
Q Consensus 568 ~i~~L~~Lr~L~L~~~~i~~LP-~~i~~L~~L~~L~l~~c~~l~--~lP~~i~~L~~Lr~L~l~~~~l~~lP~-~i~~L~ 643 (673)
.++.+.+|++|+|++|.+..+| ..++++++|++|++++|. +. .+|..++++++|++|++++|.+..+|. .++.++
T Consensus 99 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 177 (606)
T 3vq2_A 99 SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177 (606)
T ss_dssp SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHH
T ss_pred hcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCcceecChhhhhhhh
Confidence 8999999999999999988887 789999999999999987 65 589999999999999999998887754 466666
Q ss_pred CCCc
Q 005860 644 NLRT 647 (673)
Q Consensus 644 ~L~~ 647 (673)
+|+.
T Consensus 178 ~L~~ 181 (606)
T 3vq2_A 178 ENPQ 181 (606)
T ss_dssp HCTT
T ss_pred cccc
Confidence 6653
No 49
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.18 E-value=2.4e-11 Score=116.60 Aligned_cols=128 Identities=23% Similarity=0.328 Sum_probs=69.5
Q ss_pred CceEEEEEEcCCCCccccc-cccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccc-c
Q 005860 492 EKLRHSMLVLGYEASFPIS-IFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKG-I 569 (673)
Q Consensus 492 ~~~r~l~l~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~-i 569 (673)
.+++.+.+..+.....++. +..+++|++|.+.++.. ....+..|..+++|++|++++ +.+..+|.. +
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~Ls~-------n~l~~~~~~~~ 96 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL----QSLPNGVFNKLTSLTYLNLST-------NQLQSLPNGVF 96 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC----CCCCTTTTTTCTTCCEEECCS-------SCCCCCCTTTT
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCcc----CccChhhcCCCCCcCEEECCC-------CcCCccCHhHh
Confidence 3555666655555444332 33456666666655542 222333445556666666666 555555443 4
Q ss_pred ccccccccceecCCCCcccchh-hhcCCCccEEEeccCCCCcccccc-ccccccCCeeeccccc
Q 005860 570 EKLIHLRYLRLVGLGTEELPET-CCELLNLQVLEIEQCTSLKRLPLG-IGKLVNLRHLTYDDSC 631 (673)
Q Consensus 570 ~~L~~Lr~L~L~~~~i~~LP~~-i~~L~~L~~L~l~~c~~l~~lP~~-i~~L~~Lr~L~l~~~~ 631 (673)
..+.+|++|+|++|.+..+|.. +.++++|++|++++|. +..+|.. +.++++|++|++++|.
T Consensus 97 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 97 DKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCC
Confidence 5566666666666665555543 4556666666666544 5555543 4556666666665554
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.17 E-value=1.5e-11 Score=133.23 Aligned_cols=168 Identities=20% Similarity=0.235 Sum_probs=100.7
Q ss_pred CceEEEEEEcCCCCccccc-cccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccc-hhhhcc-c
Q 005860 492 EKLRHSMLVLGYEASFPIS-IFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNS-TNKILK-G 568 (673)
Q Consensus 492 ~~~r~l~l~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~lp~-~ 568 (673)
.+++.+.+..+....+++. +..+++|++|.+.++.. ....+..|.++++|+.|++++ +. +..++. .
T Consensus 123 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l----~~~~~~~~~~l~~L~~L~l~~-------~~~l~~i~~~~ 191 (452)
T 3zyi_A 123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI----ESIPSYAFNRVPSLMRLDLGE-------LKKLEYISEGA 191 (452)
T ss_dssp TTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCC----CEECTTTTTTCTTCCEEECCC-------CTTCCEECTTT
T ss_pred ccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCc----ceeCHhHHhcCCcccEEeCCC-------CCCccccChhh
Confidence 4556666655555444433 44466666666666542 223334456666666666665 33 444443 4
Q ss_pred cccccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccc-cccccccccCCeeeccccccccccc-cCCCCCCCC
Q 005860 569 IEKLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRL-PLGIGKLVNLRHLTYDDSCLEFIPK-GIQRLTNLR 646 (673)
Q Consensus 569 i~~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~l-P~~i~~L~~Lr~L~l~~~~l~~lP~-~i~~L~~L~ 646 (673)
+..+.+|++|+|++|.+..+|. +..+++|++|+|++|. +..+ |..+.++++|+.|++++|.+..++. .+..+++|+
T Consensus 192 ~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 269 (452)
T 3zyi_A 192 FEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269 (452)
T ss_dssp TTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSC-CSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccCCCCCCEEECCCCccccccc-ccccccccEEECcCCc-CcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCC
Confidence 6677777888887777777764 7777788888888766 5554 5667888888888888887776643 466666666
Q ss_pred cCCeeEE--ccCCccCCCccccCCCCCC
Q 005860 647 TLSEFVV--VRGGSKYGGKACNLEGLRY 672 (673)
Q Consensus 647 ~L~~~~~--~~~~~~~~~~~~~l~~L~~ 672 (673)
.|..-.. .......+..+.+|+.|.+
T Consensus 270 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 270 ELNLAHNNLSSLPHDLFTPLRYLVELHL 297 (452)
T ss_dssp EEECCSSCCSCCCTTSSTTCTTCCEEEC
T ss_pred EEECCCCcCCccChHHhccccCCCEEEc
Confidence 5533211 1112223445566666554
No 51
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.17 E-value=8.9e-12 Score=122.53 Aligned_cols=144 Identities=13% Similarity=0.117 Sum_probs=78.4
Q ss_pred CceEEEEEEcCC-CCcccc-ccccccccchhhhcc-chhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccc
Q 005860 492 EKLRHSMLVLGY-EASFPI-SIFKAKNLRSLFINN-TLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKG 568 (673)
Q Consensus 492 ~~~r~l~l~~~~-~~~~~~-~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~ 568 (673)
.+++.+.+..+. ...+++ .+..+++|++|.+.+ +.. ....+..|.++++|+.|++++ +.+..+|.
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l----~~i~~~~f~~l~~L~~L~l~~-------n~l~~lp~- 122 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL----TYIDPDALKELPLLKFLGIFN-------TGLKMFPD- 122 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC----CEECTTSEECCTTCCEEEEEE-------ECCCSCCC-
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe----eEcCHHHhCCCCCCCEEeCCC-------CCCccccc-
Confidence 445555555553 333333 344555566665554 331 122333455566666666666 55555554
Q ss_pred cccccccc---cceecCC-CCcccch-hhhcCCCcc-EEEeccCCCCccccccccccccCCeeeccccc-ccccccc-CC
Q 005860 569 IEKLIHLR---YLRLVGL-GTEELPE-TCCELLNLQ-VLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSC-LEFIPKG-IQ 640 (673)
Q Consensus 569 i~~L~~Lr---~L~L~~~-~i~~LP~-~i~~L~~L~-~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~-l~~lP~~-i~ 640 (673)
+..+.+|+ +|++++| .+..+|. .+..+++|+ +|+++++. +..+|......++|++|++++|. ++.+|.. ++
T Consensus 123 ~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~ 201 (239)
T 2xwt_C 123 LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFG 201 (239)
T ss_dssp CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTCEEEEEECTTCTTCCEECTTTTT
T ss_pred cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhh
Confidence 55555555 6666666 5666654 356666666 66666654 55666554444666666666663 6666543 44
Q ss_pred CC-CCCCcC
Q 005860 641 RL-TNLRTL 648 (673)
Q Consensus 641 ~L-~~L~~L 648 (673)
.+ ++|+.|
T Consensus 202 ~l~~~L~~L 210 (239)
T 2xwt_C 202 GVYSGPSLL 210 (239)
T ss_dssp TCSBCCSEE
T ss_pred ccccCCcEE
Confidence 44 444444
No 52
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.17 E-value=1.7e-11 Score=123.42 Aligned_cols=146 Identities=18% Similarity=0.205 Sum_probs=98.1
Q ss_pred cCceEEEEEEcCCCCcccc-ccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhcc-c
Q 005860 491 QEKLRHSMLVLGYEASFPI-SIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILK-G 568 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~-~ 568 (673)
..+++.+.+..+.....++ .+..+++|++|.+.++.. ....+..|.++++|+.|++++ +.+..++. .
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~l~~-------n~l~~~~~~~ 119 (276)
T 2z62_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI----QSLALGAFSGLSSLQKLVAVE-------TNLASLENFP 119 (276)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC----CEECTTTTTTCTTCCEEECTT-------SCCCCSTTCC
T ss_pred ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc----CccChhhhcCCccccEEECCC-------CCccccCchh
Confidence 3567777777776655543 456678888888887753 233445667788888888887 77666654 5
Q ss_pred cccccccccceecCCCCcc--cchhhhcCCCccEEEeccCCCCcccc-ccccccccCC----eeeccccccccccccCCC
Q 005860 569 IEKLIHLRYLRLVGLGTEE--LPETCCELLNLQVLEIEQCTSLKRLP-LGIGKLVNLR----HLTYDDSCLEFIPKGIQR 641 (673)
Q Consensus 569 i~~L~~Lr~L~L~~~~i~~--LP~~i~~L~~L~~L~l~~c~~l~~lP-~~i~~L~~Lr----~L~l~~~~l~~lP~~i~~ 641 (673)
++.+++|++|+|++|.+.. +|..++++++|++|++++|. +..+| ..+..+.+|+ .|++++|.+..+|..+..
T Consensus 120 ~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~ 198 (276)
T 2z62_A 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198 (276)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC
T ss_pred cccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceeeecCCCcccccCccccC
Confidence 7778888888888887765 67778888888888888765 66554 3566666555 566666666666655444
Q ss_pred CCCCCcC
Q 005860 642 LTNLRTL 648 (673)
Q Consensus 642 L~~L~~L 648 (673)
..+|+.|
T Consensus 199 ~~~L~~L 205 (276)
T 2z62_A 199 EIRLKEL 205 (276)
T ss_dssp SCCEEEE
T ss_pred CCcccEE
Confidence 4444433
No 53
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.16 E-value=7.5e-12 Score=119.11 Aligned_cols=144 Identities=16% Similarity=0.137 Sum_probs=109.8
Q ss_pred ccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccccccccccccceecCCCCcc-cch
Q 005860 512 FKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIEKLIHLRYLRLVGLGTEE-LPE 590 (673)
Q Consensus 512 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~-LP~ 590 (673)
..+++|++|.+.++... .++ .+..+++|+.|++++ +.+..++ .+..+++|++|++++|.+.. .|.
T Consensus 41 ~~l~~L~~L~l~~n~i~-----~l~-~l~~l~~L~~L~l~~-------n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~ 106 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-----DLT-GIEYAHNIKDLTINN-------IHATNYN-PISGLSNLERLRIMGKDVTSDKIP 106 (197)
T ss_dssp HHHHTCCEEEEESSCCS-----CCT-TGGGCTTCSEEEEES-------CCCSCCG-GGTTCTTCCEEEEECTTCBGGGSC
T ss_pred hhcCCccEEeccCCCcc-----ChH-HHhcCCCCCEEEccC-------CCCCcch-hhhcCCCCCEEEeECCccCcccCh
Confidence 46789999999987641 223 477899999999999 7665554 78899999999999999775 788
Q ss_pred hhhcCCCccEEEeccCCCCc-cccccccccccCCeeeccccc-cccccccCCCCCCCCcCCeeEEccCCccCCCccccCC
Q 005860 591 TCCELLNLQVLEIEQCTSLK-RLPLGIGKLVNLRHLTYDDSC-LEFIPKGIQRLTNLRTLSEFVVVRGGSKYGGKACNLE 668 (673)
Q Consensus 591 ~i~~L~~L~~L~l~~c~~l~-~lP~~i~~L~~Lr~L~l~~~~-l~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~ 668 (673)
.++.+++|++|++++|. +. ..|..++++++|++|++++|. +..+| .++.+++|+.|..-...-.+-..+..+.+|+
T Consensus 107 ~l~~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~ 184 (197)
T 4ezg_A 107 NLSGLTSLTLLDISHSA-HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLN 184 (197)
T ss_dssp CCTTCTTCCEEECCSSB-CBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSCC
T ss_pred hhcCCCCCCEEEecCCc-cCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChHHhccCCCCC
Confidence 99999999999999987 55 478889999999999999997 88887 5777777777644322211111234455555
Q ss_pred CCC
Q 005860 669 GLR 671 (673)
Q Consensus 669 ~L~ 671 (673)
.|.
T Consensus 185 ~L~ 187 (197)
T 4ezg_A 185 QLY 187 (197)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 54
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.16 E-value=5e-11 Score=118.91 Aligned_cols=140 Identities=19% Similarity=0.173 Sum_probs=103.6
Q ss_pred cCceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccccc
Q 005860 491 QEKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIE 570 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~ 570 (673)
..+++.+.+..+....++ .+..+++|++|.+.++.. ....+ +..++.|+.|++++ +.+..+|....
T Consensus 40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i----~~~~~--l~~l~~L~~L~L~~-------N~l~~l~~~~~ 105 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQI----SDLSP--LKDLTKLEELSVNR-------NRLKNLNGIPS 105 (263)
T ss_dssp HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCC----CCCGG--GTTCSSCCEEECCS-------SCCSCCTTCCC
T ss_pred cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCcc----CCChh--hccCCCCCEEECCC-------CccCCcCcccc
Confidence 346777777776665555 566788888888888763 22222 67888888888888 77777765444
Q ss_pred cccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccccccccCCCCCCCCcCCe
Q 005860 571 KLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKGIQRLTNLRTLSE 650 (673)
Q Consensus 571 ~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~i~~L~~L~~L~~ 650 (673)
.+|++|+|++|.+..+| .++.+++|++|++++|. +..+| .++.+++|++|++++|.+..+ ..+..+++|+.|..
T Consensus 106 --~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l 179 (263)
T 1xeu_A 106 --ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDL 179 (263)
T ss_dssp --SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEE
T ss_pred --CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeC
Confidence 78888888888888876 48888888888888866 77777 688888888888888888777 45777777776643
No 55
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.16 E-value=3.1e-11 Score=117.78 Aligned_cols=133 Identities=22% Similarity=0.284 Sum_probs=114.1
Q ss_pred ccCceEEEEEEcCCCCcc-ccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccc
Q 005860 490 YQEKLRHSMLVLGYEASF-PISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKG 568 (673)
Q Consensus 490 ~~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~ 568 (673)
.+.+++.+.+..+..... +..+..+++|+.|.+.++.+ ....+..|..+++|++|+|++ +.+..+|+.
T Consensus 38 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l----~~i~~~~~~~l~~L~~L~Ls~-------N~l~~l~~~ 106 (229)
T 3e6j_A 38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL----GALPVGVFDSLTQLTVLDLGT-------NQLTVLPSA 106 (229)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC----CCCCTTTTTTCTTCCEEECCS-------SCCCCCCTT
T ss_pred CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC----CCcChhhcccCCCcCEEECCC-------CcCCccChh
Confidence 357899999998887666 44567899999999999873 344456678999999999999 998888765
Q ss_pred -cccccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccc-cccccccCCeeecccccccc
Q 005860 569 -IEKLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPL-GIGKLVNLRHLTYDDSCLEF 634 (673)
Q Consensus 569 -i~~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~-~i~~L~~Lr~L~l~~~~l~~ 634 (673)
+..+.+|++|+|++|.+..+|..+..+++|++|+|+++. +..+|. .+..+++|++|++++|.+..
T Consensus 107 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred HhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 688999999999999999999999999999999999976 888885 58899999999999887653
No 56
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.14 E-value=3.2e-11 Score=125.63 Aligned_cols=141 Identities=18% Similarity=0.222 Sum_probs=95.1
Q ss_pred cCceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccccc
Q 005860 491 QEKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIE 570 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~ 570 (673)
..+++.+.+..+.....++ +..+++|++|.+.++... . ++ .+..+++|+.|++++ +.+..++. +.
T Consensus 65 ~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~----~-~~-~~~~l~~L~~L~l~~-------n~i~~~~~-~~ 129 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKIT----D-IS-ALQNLTNLRELYLNE-------DNISDISP-LA 129 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC----C-CG-GGTTCTTCSEEECTT-------SCCCCCGG-GT
T ss_pred cCCccEEEccCCccccchh-hhcCCcCCEEEccCCccc----C-ch-HHcCCCcCCEEECcC-------CcccCchh-hc
Confidence 4567777777766655554 667777777777776531 1 12 366777778888777 77666665 77
Q ss_pred cccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccccccccCCCCCCCCcCC
Q 005860 571 KLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKGIQRLTNLRTLS 649 (673)
Q Consensus 571 ~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~i~~L~~L~~L~ 649 (673)
.+++|++|++++|.....++.+..+++|++|++++|. +..+|. ++.+++|++|++++|.+..+|. +..+++|+.|.
T Consensus 130 ~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 205 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFT 205 (347)
T ss_dssp TCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEE
T ss_pred cCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceee
Confidence 7777888888777633333447777888888888766 666664 7778888888888877777765 55555555443
No 57
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.14 E-value=1.6e-09 Score=114.45 Aligned_cols=168 Identities=15% Similarity=0.098 Sum_probs=108.1
Q ss_pred CCcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccc---c-CCeEEEEEcCCcccHHH
Q 005860 168 VSEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFE---Y-FDKRMWVCVSDPFDELR 243 (673)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~-F~~~~wv~vs~~~~~~~ 243 (673)
++.++||+.+++++..++...-. ....+.+.|+|++|+||||||+.+++...-.. . -...+|+.+....+...
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~---~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 94 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR---GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYR 94 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS---SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc---CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHH
Confidence 47899999999999998854310 12356789999999999999999998521110 0 12467888888888889
Q ss_pred HHHHHHHHhhCCCCC-cCcHHHHHHHHHHHh--CCCeEEEEEcCCCCCCcc--chhhhhhhccCC-----CCCeEEEEEc
Q 005860 244 IAKAIIEALEGFVPT-VGELNSLLESIRASL--VGKKFLLILDDMWTDDYS--KWEPFHYCLKNG-----VRGSKILVTT 313 (673)
Q Consensus 244 ~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l--~~kr~LlVLDdvw~~~~~--~~~~l~~~l~~~-----~~gs~iivTt 313 (673)
++..++.+++...+. .....++...+.+.+ .+++.+||||++..-... ..+.+...+... ..+..+|.||
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t 174 (387)
T 2v1u_A 95 VASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGIT 174 (387)
T ss_dssp HHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEEC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEE
Confidence 999999999765332 223555566666666 456899999999542211 122233222211 3456778888
Q ss_pred CChhH--------HHhccccceeecCCCCccccc
Q 005860 314 RKETV--------ARMMESIHVISIKELSEQECW 339 (673)
Q Consensus 314 r~~~v--------~~~~~~~~~~~l~~L~~~~~~ 339 (673)
+.... ...++ ...+.+++++.++..
T Consensus 175 ~~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~ 207 (387)
T 2v1u_A 175 NSLGFVENLEPRVKSSLG-EVELVFPPYTAPQLR 207 (387)
T ss_dssp SCSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHH
T ss_pred CCCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHH
Confidence 76522 11111 146888898877754
No 58
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.14 E-value=8.3e-11 Score=121.72 Aligned_cols=134 Identities=21% Similarity=0.226 Sum_probs=102.3
Q ss_pred cCceEEEEEEcCCCCcccc-ccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhcccc
Q 005860 491 QEKLRHSMLVLGYEASFPI-SIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGI 569 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i 569 (673)
...++.+.+..+.....++ .+..+++|++|.+.++.. ....+..|.++++|+.|++++ +.+..+|..+
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~-------n~l~~l~~~~ 121 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI----SKIHEKAFSPLRKLQKLYISK-------NHLVEIPPNL 121 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC----CEECGGGSTTCTTCCEEECCS-------SCCCSCCSSC
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCcc----CccCHhHhhCcCCCCEEECCC-------CcCCccCccc
Confidence 4578889888887766644 577899999999998763 344566788999999999999 8888888877
Q ss_pred ccccccccceecCCCCcccch-hhhcCCCccEEEeccCCCCc---cccccccccccCCeeeccccccccccccC
Q 005860 570 EKLIHLRYLRLVGLGTEELPE-TCCELLNLQVLEIEQCTSLK---RLPLGIGKLVNLRHLTYDDSCLEFIPKGI 639 (673)
Q Consensus 570 ~~L~~Lr~L~L~~~~i~~LP~-~i~~L~~L~~L~l~~c~~l~---~lP~~i~~L~~Lr~L~l~~~~l~~lP~~i 639 (673)
. .+|++|++++|.+..+|. .+..+++|++|++++|. +. ..|..+..+ +|++|++++|.+..+|..+
T Consensus 122 ~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~ 191 (332)
T 2ft3_A 122 P--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDL 191 (332)
T ss_dssp C--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSS
T ss_pred c--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCCCCccCccc
Confidence 6 789999999999888875 47889999999999876 54 345566666 6666666666655555443
No 59
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.14 E-value=3.1e-11 Score=133.67 Aligned_cols=86 Identities=21% Similarity=0.264 Sum_probs=41.1
Q ss_pred cchhhhccccccccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccccc--cc
Q 005860 560 NSTNKILKGIEKLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFI--PK 637 (673)
Q Consensus 560 ~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~l--P~ 637 (673)
+.+..+|. ++.+++|++|+|++|.+..+|..+++|++|++|+|++|. +..+| .+++|++|++|++++|.++.+ |.
T Consensus 451 n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~ 527 (567)
T 1dce_A 451 KDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNRLQQSAAIQ 527 (567)
T ss_dssp SCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSCCCSSSTTG
T ss_pred CCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCCCCCCCCCcH
Confidence 44444443 444455555555554444455445555555555554433 44444 444455555555444444444 44
Q ss_pred cCCCCCCCCcC
Q 005860 638 GIQRLTNLRTL 648 (673)
Q Consensus 638 ~i~~L~~L~~L 648 (673)
.++.|++|++|
T Consensus 528 ~l~~l~~L~~L 538 (567)
T 1dce_A 528 PLVSCPRLVLL 538 (567)
T ss_dssp GGGGCTTCCEE
T ss_pred HHhcCCCCCEE
Confidence 44444444433
No 60
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.13 E-value=1.2e-11 Score=136.95 Aligned_cols=147 Identities=20% Similarity=0.238 Sum_probs=89.5
Q ss_pred ceEEEEEEcCCCCccccccccccccchhhhccchhhh---------hhhhhHHHHhhhCCccceee-eccccccccccch
Q 005860 493 KLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQV---------SLTHVLQSLFDQLKCLRALR-IATLMNTWDVNST 562 (673)
Q Consensus 493 ~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~---------~~~~~~~~~~~~l~~L~~L~-L~~~~~~~~~~~~ 562 (673)
.++++.+..+....+|..+..+++|+.|.+.++.... ......|..+..+++|+.|+ ++. +.+
T Consensus 350 ~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~-------n~~ 422 (567)
T 1dce_A 350 QLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA-------AYL 422 (567)
T ss_dssp TSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH-------HHH
T ss_pred cceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhh-------ccc
Confidence 4445555555555667777778888887775543100 01233455566666666666 333 222
Q ss_pred hhhcc------ccccc--cccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeecccccccc
Q 005860 563 NKILK------GIEKL--IHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEF 634 (673)
Q Consensus 563 ~~lp~------~i~~L--~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~ 634 (673)
..++. .+..+ ..|++|+|++|.+..+|. ++.|++|++|+|++|. +..+|..+++|++|++|++++|.++.
T Consensus 423 ~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred chhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCCCCC
Confidence 22211 11111 246777777777777776 7777777777777765 66777777777777777777777777
Q ss_pred ccccCCCCCCCCcCC
Q 005860 635 IPKGIQRLTNLRTLS 649 (673)
Q Consensus 635 lP~~i~~L~~L~~L~ 649 (673)
+| ++++|++|++|.
T Consensus 501 lp-~l~~l~~L~~L~ 514 (567)
T 1dce_A 501 VD-GVANLPRLQELL 514 (567)
T ss_dssp CG-GGTTCSSCCEEE
T ss_pred Cc-ccCCCCCCcEEE
Confidence 76 666666666653
No 61
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.13 E-value=2e-11 Score=139.49 Aligned_cols=111 Identities=23% Similarity=0.269 Sum_probs=65.7
Q ss_pred ccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccccccccccccceecCCCCcccc
Q 005860 510 SIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIEKLIHLRYLRLVGLGTEELP 589 (673)
Q Consensus 510 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP 589 (673)
.+..+++|+.|.+.++.+ . .++..+..+++|+.|+|++ |.+..+|..++.|.+|++|+|++|.+..+|
T Consensus 219 ~~~~l~~L~~L~Ls~n~l----~-~l~~~~~~l~~L~~L~Ls~-------N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp 286 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQI----F-NISANIFKYDFLTRLYLNG-------NSLTELPAEIKNLSNLRVLDLSHNRLTSLP 286 (727)
T ss_dssp ---CCCCCCEEECTTSCC----S-CCCGGGGGCCSCSCCBCTT-------SCCSCCCGGGGGGTTCCEEECTTSCCSSCC
T ss_pred hhccCCCCcEEECCCCCC----C-CCChhhcCCCCCCEEEeeC-------CcCcccChhhhCCCCCCEEeCcCCcCCccC
Confidence 344556666666666542 1 1222233566666666666 666566666666666666666666666666
Q ss_pred hhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccc
Q 005860 590 ETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLE 633 (673)
Q Consensus 590 ~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~ 633 (673)
.+|++|++|++|+|++|. +..+|.+|++|++|++|++++|.+.
T Consensus 287 ~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp SSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred hhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccC
Confidence 666666666666666654 6666666666666666666666555
No 62
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.12 E-value=4.1e-11 Score=116.11 Aligned_cols=131 Identities=15% Similarity=0.144 Sum_probs=110.4
Q ss_pred cCceEEEEEEcCCCCcccc--ccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhcc-
Q 005860 491 QEKLRHSMLVLGYEASFPI--SIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILK- 567 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~- 567 (673)
+..++.+.+..+.....++ .+..+++|++|.+.++.. ....+..|.++++|+.|+|++ +.+..+|+
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i----~~i~~~~~~~l~~L~~L~Ls~-------N~l~~~~~~ 99 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI----TDIEEGAFEGASGVNEILLTS-------NRLENVQHK 99 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCC----CEECTTTTTTCTTCCEEECCS-------SCCCCCCGG
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcC----CEECHHHhCCCCCCCEEECCC-------CccCccCHh
Confidence 4567888888888766633 367899999999999873 344556788999999999999 99888766
Q ss_pred ccccccccccceecCCCCccc-chhhhcCCCccEEEeccCCCCccc-cccccccccCCeeeccccccc
Q 005860 568 GIEKLIHLRYLRLVGLGTEEL-PETCCELLNLQVLEIEQCTSLKRL-PLGIGKLVNLRHLTYDDSCLE 633 (673)
Q Consensus 568 ~i~~L~~Lr~L~L~~~~i~~L-P~~i~~L~~L~~L~l~~c~~l~~l-P~~i~~L~~Lr~L~l~~~~l~ 633 (673)
.+..+.+|++|+|++|.+..+ |..+..+++|++|+|++|. +..+ |..+..+++|++|++++|.+.
T Consensus 100 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 100 MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 488999999999999998888 6789999999999999976 7777 778999999999999988764
No 63
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.12 E-value=5.8e-11 Score=122.79 Aligned_cols=133 Identities=18% Similarity=0.166 Sum_probs=90.6
Q ss_pred cCceEEEEEEcCCCCcccc-ccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhcccc
Q 005860 491 QEKLRHSMLVLGYEASFPI-SIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGI 569 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i 569 (673)
+..++.+.+..+.....++ .+..+++|++|.+.++.. ....+..|..+++|+.|++++ +.+..+|..+
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~Ls~-------n~l~~l~~~~ 119 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI----SKISPGAFAPLVKLERLYLSK-------NQLKELPEKM 119 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC----CCBCTTTTTTCTTCCEEECCS-------SCCSBCCSSC
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcC----CeeCHHHhcCCCCCCEEECCC-------CcCCccChhh
Confidence 4577888888877766654 567788999999888763 334466778888899999988 7777777666
Q ss_pred ccccccccceecCCCCcccch-hhhcCCCccEEEeccCCCCc---cccccccccccCCeeeccccccccccc
Q 005860 570 EKLIHLRYLRLVGLGTEELPE-TCCELLNLQVLEIEQCTSLK---RLPLGIGKLVNLRHLTYDDSCLEFIPK 637 (673)
Q Consensus 570 ~~L~~Lr~L~L~~~~i~~LP~-~i~~L~~L~~L~l~~c~~l~---~lP~~i~~L~~Lr~L~l~~~~l~~lP~ 637 (673)
. .+|++|++++|.+..+|. .+.++++|++|++++|. +. ..|..+.++++|++|++++|.+..+|.
T Consensus 120 ~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~ 188 (330)
T 1xku_A 120 P--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITTIPQ 188 (330)
T ss_dssp C--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS
T ss_pred c--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccccCCc
Confidence 5 567777777777666653 46666777777776654 32 344556666666666665555555543
No 64
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.12 E-value=9.5e-10 Score=116.15 Aligned_cols=169 Identities=14% Similarity=0.121 Sum_probs=110.0
Q ss_pred CCcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCcccc----cc--CCeEEEEEcCCcc-c
Q 005860 168 VSEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVF----EY--FDKRMWVCVSDPF-D 240 (673)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~--F~~~~wv~vs~~~-~ 240 (673)
++.++||+.+++++..++..... ....+.+.|+|++|+||||||+.+++...-. .. ....+|++++... +
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~---~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 95 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK---NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGT 95 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT---TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSC
T ss_pred CCCCCChHHHHHHHHHHHHHHHc---CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCC
Confidence 36899999999999988754210 1234689999999999999999999852111 01 3356788877666 7
Q ss_pred HHHHHHHHHHHhhCCCCC--cCcHHHHHHHHHHHhCCCeEEEEEcCCCCCCccchhhh-hhhccCCCCCeEEEEEcCChh
Q 005860 241 ELRIAKAIIEALEGFVPT--VGELNSLLESIRASLVGKKFLLILDDMWTDDYSKWEPF-HYCLKNGVRGSKILVTTRKET 317 (673)
Q Consensus 241 ~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l-~~~l~~~~~gs~iivTtr~~~ 317 (673)
...++..++.++...... ..........+.+.+..++.+|||||++.-....+..+ ...+.....+..||+||+...
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~ 175 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTT
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCc
Confidence 888999999988543221 22345667777888887777999999954222111222 222322226788999998653
Q ss_pred HHH----hc--cccceeecCCCCccccc
Q 005860 318 VAR----MM--ESIHVISIKELSEQECW 339 (673)
Q Consensus 318 v~~----~~--~~~~~~~l~~L~~~~~~ 339 (673)
... .. .....+++++++.++..
T Consensus 176 ~~~~l~~~l~sr~~~~i~l~~l~~~~~~ 203 (384)
T 2qby_B 176 VRDYMEPRVLSSLGPSVIFKPYDAEQLK 203 (384)
T ss_dssp TTTTSCHHHHHTCCCEEEECCCCHHHHH
T ss_pred hHhhhCHHHHhcCCCeEEECCCCHHHHH
Confidence 211 11 11237889999887754
No 65
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.12 E-value=4.6e-11 Score=138.14 Aligned_cols=81 Identities=19% Similarity=0.248 Sum_probs=59.3
Q ss_pred ccccccccccceecCCCCc-ccchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccc-cccccCCCCCCC
Q 005860 568 GIEKLIHLRYLRLVGLGTE-ELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLE-FIPKGIQRLTNL 645 (673)
Q Consensus 568 ~i~~L~~Lr~L~L~~~~i~-~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~-~lP~~i~~L~~L 645 (673)
.++.+..|++|+|++|.+. .+|..+++|++|++|+|++|.--..+|..+++|++|+.|++++|.++ .+|..+++|++|
T Consensus 627 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L 706 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706 (768)
T ss_dssp SCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCC
T ss_pred hhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCC
Confidence 3445567777778777744 67778888888888888877633477888888888888888887777 567777777766
Q ss_pred CcC
Q 005860 646 RTL 648 (673)
Q Consensus 646 ~~L 648 (673)
++|
T Consensus 707 ~~L 709 (768)
T 3rgz_A 707 TEI 709 (768)
T ss_dssp SEE
T ss_pred CEE
Confidence 665
No 66
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.12 E-value=2.4e-11 Score=124.51 Aligned_cols=115 Identities=17% Similarity=0.198 Sum_probs=56.0
Q ss_pred cccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhh---hcc--ccccccccccceecCCCCcc
Q 005860 513 KAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNK---ILK--GIEKLIHLRYLRLVGLGTEE 587 (673)
Q Consensus 513 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~---lp~--~i~~L~~Lr~L~L~~~~i~~ 587 (673)
.+++|++|.+.++.. ....+..|..+++|+.|++++ +.+.. ++. .++.+++|++|+|++|.++.
T Consensus 143 ~~~~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~-------N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 211 (310)
T 4glp_A 143 LKPGLKVLSIAQAHS----PAFSCEQVRAFPALTSLDLSD-------NPGLGERGLMAALCPHKFPAIQNLALRNTGMET 211 (310)
T ss_dssp BCSCCCEEEEECCSS----CCCCTTSCCCCTTCCEEECCS-------CTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC
T ss_pred hccCCCEEEeeCCCc----chhhHHHhccCCCCCEEECCC-------CCCccchhhhHHHhhhcCCCCCEEECCCCCCCc
Confidence 345555555555442 222333444555555555555 44221 222 12455555555555555554
Q ss_pred cchh----hhcCCCccEEEeccCCCCccc-ccccccc---ccCCeeeccccccccccccC
Q 005860 588 LPET----CCELLNLQVLEIEQCTSLKRL-PLGIGKL---VNLRHLTYDDSCLEFIPKGI 639 (673)
Q Consensus 588 LP~~----i~~L~~L~~L~l~~c~~l~~l-P~~i~~L---~~Lr~L~l~~~~l~~lP~~i 639 (673)
+|.. ++.+++|++|++++|. +..+ |..++.+ ++|++|++++|.++.+|..+
T Consensus 212 l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~ 270 (310)
T 4glp_A 212 PTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL 270 (310)
T ss_dssp HHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC
T ss_pred hHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCCCCchhhhh
Confidence 4432 3445555555555544 4433 5444444 35555555555555555544
No 67
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.11 E-value=5.4e-11 Score=115.28 Aligned_cols=131 Identities=20% Similarity=0.248 Sum_probs=112.1
Q ss_pred cCceEEEEEEcCCCCcccc-ccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccc-
Q 005860 491 QEKLRHSMLVLGYEASFPI-SIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKG- 568 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~- 568 (673)
+..++.+.+..+....+++ .+..+++|+.|.+.++.. ....+..|.++++|++|+|++ +.+..+|+.
T Consensus 31 ~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i----~~~~~~~~~~l~~L~~L~Ls~-------N~l~~l~~~~ 99 (220)
T 2v9t_B 31 PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI----SELAPDAFQGLRSLNSLVLYG-------NKITELPKSL 99 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCC----CEECTTTTTTCSSCCEEECCS-------SCCCCCCTTT
T ss_pred CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcC----CCcCHHHhhCCcCCCEEECCC-------CcCCccCHhH
Confidence 4678999999888776665 567799999999999873 345567789999999999999 999998876
Q ss_pred cccccccccceecCCCCccc-chhhhcCCCccEEEeccCCCCccccc-cccccccCCeeeccccccc
Q 005860 569 IEKLIHLRYLRLVGLGTEEL-PETCCELLNLQVLEIEQCTSLKRLPL-GIGKLVNLRHLTYDDSCLE 633 (673)
Q Consensus 569 i~~L~~Lr~L~L~~~~i~~L-P~~i~~L~~L~~L~l~~c~~l~~lP~-~i~~L~~Lr~L~l~~~~l~ 633 (673)
+..+.+|++|+|++|.+..+ |..+..+++|++|+|++|. +..+|. .+..+++|++|++++|.+.
T Consensus 100 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 100 FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 58899999999999998888 4679999999999999976 888876 4889999999999888754
No 68
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.11 E-value=3.3e-11 Score=118.47 Aligned_cols=149 Identities=15% Similarity=0.231 Sum_probs=102.4
Q ss_pred ccCceEEEEEEcCCCCcccc-ccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhc-c
Q 005860 490 YQEKLRHSMLVLGYEASFPI-SIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKIL-K 567 (673)
Q Consensus 490 ~~~~~r~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp-~ 567 (673)
.+..++.+.+..+....+++ .+..+++|++|.+.++.. +....+..|.++++|+.|++++. +.+..+| .
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~---l~~i~~~~f~~l~~L~~L~l~~~------n~l~~i~~~ 99 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT---LQQLESHSFYNLSKVTHIEIRNT------RNLTYIDPD 99 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSS---CCEECTTTEESCTTCCEEEEEEE------TTCCEECTT
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCC---cceeCHhHcCCCcCCcEEECCCC------CCeeEcCHH
Confidence 34567788887777766655 455678888888877641 11233445677788888888741 3455655 3
Q ss_pred ccccccccccceecCCCCcccchhhhcCCCcc---EEEeccCCCCcccccc-ccccccCC-eeeccccccccccccCCCC
Q 005860 568 GIEKLIHLRYLRLVGLGTEELPETCCELLNLQ---VLEIEQCTSLKRLPLG-IGKLVNLR-HLTYDDSCLEFIPKGIQRL 642 (673)
Q Consensus 568 ~i~~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~---~L~l~~c~~l~~lP~~-i~~L~~Lr-~L~l~~~~l~~lP~~i~~L 642 (673)
.+..+++|++|++++|.+..+|. ++.+++|+ +|++++|+.+..+|.. +..+++|+ +|++++|.+..+|......
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~ 178 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG 178 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT
T ss_pred HhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC
Confidence 56778888888888888777876 77777777 8888887347777754 77788888 8888888887777665444
Q ss_pred CCCCcC
Q 005860 643 TNLRTL 648 (673)
Q Consensus 643 ~~L~~L 648 (673)
++|+.|
T Consensus 179 ~~L~~L 184 (239)
T 2xwt_C 179 TKLDAV 184 (239)
T ss_dssp CEEEEE
T ss_pred CCCCEE
Confidence 555544
No 69
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.10 E-value=3.2e-11 Score=135.33 Aligned_cols=80 Identities=18% Similarity=0.123 Sum_probs=49.1
Q ss_pred ccccccccccceecCCCCccc-chhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccccccccCCCCCCCC
Q 005860 568 GIEKLIHLRYLRLVGLGTEEL-PETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKGIQRLTNLR 646 (673)
Q Consensus 568 ~i~~L~~Lr~L~L~~~~i~~L-P~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~i~~L~~L~ 646 (673)
.++.+++|++|+|++|.+..+ |..++.+++|++|+|++|. +..+|..++.+++|++|++++|.+..+|..++.+++|+
T Consensus 249 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~ 327 (597)
T 3oja_B 249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE 327 (597)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCS
T ss_pred hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCC
Confidence 355556666666666665444 4566666666666666654 66666666666666666666666666666555555555
Q ss_pred cC
Q 005860 647 TL 648 (673)
Q Consensus 647 ~L 648 (673)
.|
T Consensus 328 ~L 329 (597)
T 3oja_B 328 NL 329 (597)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 70
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.10 E-value=2.6e-11 Score=132.17 Aligned_cols=146 Identities=23% Similarity=0.234 Sum_probs=96.1
Q ss_pred cCceEEEEEEcCCCCccc-cccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccc-
Q 005860 491 QEKLRHSMLVLGYEASFP-ISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKG- 568 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~- 568 (673)
+..++.+.+..+.....+ ..+..+++|++|.+.++.. ....+..|.++++|+.|+|++ +.+..+|..
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i----~~~~~~~~~~l~~L~~L~L~~-------n~l~~~~~~~ 99 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV----SAVEPGAFNNLFNLRTLGLRS-------NRLKLIPLGV 99 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC----CEECTTTTTTCTTCCEEECCS-------SCCCSCCTTS
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCcc----CEeChhhhhCCccCCEEECCC-------CcCCccCccc
Confidence 456777777777665553 3566778888888877652 233455677777788888877 777666654
Q ss_pred cccccccccceecCCCCccc-chhhhcCCCccEEEeccCCCCccc-cccccccccCCeeecccccccccccc-CCCCCCC
Q 005860 569 IEKLIHLRYLRLVGLGTEEL-PETCCELLNLQVLEIEQCTSLKRL-PLGIGKLVNLRHLTYDDSCLEFIPKG-IQRLTNL 645 (673)
Q Consensus 569 i~~L~~Lr~L~L~~~~i~~L-P~~i~~L~~L~~L~l~~c~~l~~l-P~~i~~L~~Lr~L~l~~~~l~~lP~~-i~~L~~L 645 (673)
+..+.+|++|+|++|.+..+ |..+.++++|++|++++|. +..+ |..++++++|++|++++|.+..+|.. ++++++|
T Consensus 100 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 178 (477)
T 2id5_A 100 FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL 178 (477)
T ss_dssp STTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTC
T ss_pred ccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCC
Confidence 56777777777777776555 4566777777777777755 4444 34566777777777776666666543 4555555
Q ss_pred CcC
Q 005860 646 RTL 648 (673)
Q Consensus 646 ~~L 648 (673)
+.|
T Consensus 179 ~~L 181 (477)
T 2id5_A 179 IVL 181 (477)
T ss_dssp CEE
T ss_pred cEE
Confidence 544
No 71
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.10 E-value=5.1e-11 Score=134.07 Aligned_cols=138 Identities=21% Similarity=0.248 Sum_probs=115.2
Q ss_pred EEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhh-cccccccccccc
Q 005860 499 LVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKI-LKGIEKLIHLRY 577 (673)
Q Consensus 499 l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l-p~~i~~L~~Lr~ 577 (673)
........+|..+. ++|++|++.++.. ....+..|.++++|++|++++ +.+..+ |..++.+++|++
T Consensus 18 c~~~~l~~ip~~~~--~~l~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~-------n~l~~i~~~~~~~l~~L~~ 84 (606)
T 3vq2_A 18 CMDQKLSKVPDDIP--SSTKNIDLSFNPL----KILKSYSFSNFSELQWLDLSR-------CEIETIEDKAWHGLHHLSN 84 (606)
T ss_dssp CTTSCCSSCCTTSC--TTCCEEECTTSCC----CEECTTTTTTCTTCCEEECTT-------CCCCEECTTTTTTCTTCCE
T ss_pred ccCCCcccCCCCCC--CCcCEEECCCCCc----CEeChhhccCCccCcEEeCCC-------CcccccCHHHhhchhhcCE
Confidence 33334455665443 7899999999873 345556789999999999999 888877 557899999999
Q ss_pred ceecCCCCccc-chhhhcCCCccEEEeccCCCCcccc-ccccccccCCeeeccccccc--cccccCCCCCCCCcCCe
Q 005860 578 LRLVGLGTEEL-PETCCELLNLQVLEIEQCTSLKRLP-LGIGKLVNLRHLTYDDSCLE--FIPKGIQRLTNLRTLSE 650 (673)
Q Consensus 578 L~L~~~~i~~L-P~~i~~L~~L~~L~l~~c~~l~~lP-~~i~~L~~Lr~L~l~~~~l~--~lP~~i~~L~~L~~L~~ 650 (673)
|+|++|.+..+ |..+++|++|++|++++|. +..+| ..++++++|++|++++|.+. .+|..++++++|+.|..
T Consensus 85 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~L 160 (606)
T 3vq2_A 85 LILTGNPIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160 (606)
T ss_dssp EECTTCCCCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEEC
T ss_pred eECCCCcccccChhhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEc
Confidence 99999998888 7899999999999999987 77777 67999999999999999987 47888999999998743
No 72
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.10 E-value=2.6e-11 Score=109.62 Aligned_cols=124 Identities=20% Similarity=0.161 Sum_probs=106.1
Q ss_pred cCceEEEEEEcCCCC--ccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhh-hcc
Q 005860 491 QEKLRHSMLVLGYEA--SFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNK-ILK 567 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~--~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~-lp~ 567 (673)
..+++++.+..+... .++..+..+++|+.|.+.++... .. ..+..+++|++|++++ +.+.. +|.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~----~~--~~~~~l~~L~~L~Ls~-------n~i~~~~~~ 82 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT----SI--ANLPKLNKLKKLELSD-------NRVSGGLEV 82 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC----CC--TTCCCCTTCCEEECCS-------SCCCSCTHH
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC----Cc--hhhhcCCCCCEEECCC-------CcccchHHH
Confidence 457888988888776 66777788999999999998741 22 5678899999999999 88877 788
Q ss_pred ccccccccccceecCCCCcccc--hhhhcCCCccEEEeccCCCCccccc----cccccccCCeeecc
Q 005860 568 GIEKLIHLRYLRLVGLGTEELP--ETCCELLNLQVLEIEQCTSLKRLPL----GIGKLVNLRHLTYD 628 (673)
Q Consensus 568 ~i~~L~~Lr~L~L~~~~i~~LP--~~i~~L~~L~~L~l~~c~~l~~lP~----~i~~L~~Lr~L~l~ 628 (673)
.++.+++|++|++++|.+..+| ..++.+++|++|++++|. +..+|. .++.+++|++|+++
T Consensus 83 ~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 8888999999999999999876 889999999999999986 888886 68999999999865
No 73
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.09 E-value=1.8e-10 Score=128.32 Aligned_cols=130 Identities=21% Similarity=0.183 Sum_probs=102.9
Q ss_pred ccCceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhcccc
Q 005860 490 YQEKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGI 569 (673)
Q Consensus 490 ~~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i 569 (673)
...+++.+.+..+....++ .+..+++|+.|.+.++.+. . + ..+..+++|+.|+|++ |.+..+ +.+
T Consensus 85 ~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~----~-l-~~l~~l~~L~~L~Ls~-------N~l~~l-~~l 149 (605)
T 1m9s_A 85 NLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGIS----D-I-NGLVHLPQLESLYLGN-------NKITDI-TVL 149 (605)
T ss_dssp GCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCC----C-C-GGGGGCTTCSEEECCS-------SCCCCC-GGG
T ss_pred cCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCC----C-C-ccccCCCccCEEECCC-------CccCCc-hhh
Confidence 4567888888887766544 5778888999988887642 1 2 2367888899999988 877776 578
Q ss_pred ccccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccccccc
Q 005860 570 EKLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPK 637 (673)
Q Consensus 570 ~~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~ 637 (673)
+.|++|++|+|++|.+..+|+ +..|++|+.|+|++|. +..+| .+..|++|+.|++++|.+...|.
T Consensus 150 ~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-i~~l~-~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 150 SRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp GSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBCG-GGTTCTTCSEEECCSEEEECCCC
T ss_pred cccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEccCCcCcCCcc
Confidence 888899999999998888877 8889999999999876 87776 68888999999988888776653
No 74
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.09 E-value=6.7e-11 Score=125.36 Aligned_cols=143 Identities=14% Similarity=0.153 Sum_probs=112.1
Q ss_pred cCceEEEEEEcCCCCccccc-cccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhcc-c
Q 005860 491 QEKLRHSMLVLGYEASFPIS-IFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILK-G 568 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~-~ 568 (673)
..+++.+.+..+....+|+. +..+++|++|.+.++.. ....+..|..+++|+.|++++ +.+..+|+ .
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i----~~~~~~~~~~l~~L~~L~L~~-------n~l~~~~~~~ 112 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI----EEIDTYAFAYAHTIQKLYMGF-------NAIRYLPPHV 112 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCC----CEECTTTTTTCTTCCEEECCS-------SCCCCCCTTT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcc----cccChhhccCCCCcCEEECCC-------CCCCcCCHHH
Confidence 46788888888877777765 45688999999988763 334455678899999999999 88777654 5
Q ss_pred cccccccccceecCCCCcccchhh-hcCCCccEEEeccCCCCcccc-ccccccccCCeeeccccccccccccCCCCCCCC
Q 005860 569 IEKLIHLRYLRLVGLGTEELPETC-CELLNLQVLEIEQCTSLKRLP-LGIGKLVNLRHLTYDDSCLEFIPKGIQRLTNLR 646 (673)
Q Consensus 569 i~~L~~Lr~L~L~~~~i~~LP~~i-~~L~~L~~L~l~~c~~l~~lP-~~i~~L~~Lr~L~l~~~~l~~lP~~i~~L~~L~ 646 (673)
++.+++|++|+|++|.+..+|..+ +++++|++|++++|. +..+| ..++++++|++|++++|.+..+| ++.+++|+
T Consensus 113 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~ 189 (390)
T 3o6n_A 113 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLF 189 (390)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCS
T ss_pred hcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCccc--cccccccc
Confidence 789999999999999999998774 889999999999876 66665 45889999999999988887764 34455554
Q ss_pred c
Q 005860 647 T 647 (673)
Q Consensus 647 ~ 647 (673)
.
T Consensus 190 ~ 190 (390)
T 3o6n_A 190 H 190 (390)
T ss_dssp E
T ss_pred e
Confidence 4
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.09 E-value=3e-11 Score=123.92 Aligned_cols=62 Identities=23% Similarity=0.276 Sum_probs=26.8
Q ss_pred ccccccceecCCCCcccc--hhhhcCCCccEEEeccCCCCccccccccccccCCeeecccccccccc
Q 005860 572 LIHLRYLRLVGLGTEELP--ETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIP 636 (673)
Q Consensus 572 L~~Lr~L~L~~~~i~~LP--~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP 636 (673)
+++|++|+|++|.+...+ ..+..+++|++|++++|. +..+|..+. ++|++|++++|.++.+|
T Consensus 227 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l~~~p 290 (312)
T 1wwl_A 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNRLDRNP 290 (312)
T ss_dssp TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSCCCSCC
T ss_pred CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCCCCCCCh
Confidence 344444444444443332 223334444444444433 444444433 44444444444444443
No 76
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.09 E-value=1e-10 Score=121.86 Aligned_cols=142 Identities=18% Similarity=0.267 Sum_probs=101.4
Q ss_pred ccCceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhcccc
Q 005860 490 YQEKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGI 569 (673)
Q Consensus 490 ~~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i 569 (673)
...+++.+.+..+....++ .+..+++|++|.+.++.. .. .+. +..++.|+.|++++ +.....++.+
T Consensus 86 ~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i----~~-~~~-~~~l~~L~~L~l~~-------n~~~~~~~~~ 151 (347)
T 4fmz_A 86 NLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNI----SD-ISP-LANLTKMYSLNLGA-------NHNLSDLSPL 151 (347)
T ss_dssp TCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCC----CC-CGG-GTTCTTCCEEECTT-------CTTCCCCGGG
T ss_pred cCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcc----cC-chh-hccCCceeEEECCC-------CCCcccccch
Confidence 3467788888777665543 466788888888887763 11 222 67788888888888 6533344457
Q ss_pred ccccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccccccccCCCCCCCCcCC
Q 005860 570 EKLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKGIQRLTNLRTLS 649 (673)
Q Consensus 570 ~~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~i~~L~~L~~L~ 649 (673)
..+++|++|++++|.+..+|. +..+++|++|++++|. +..+|. +..+++|++|++++|.+..++. ++.+++|++|.
T Consensus 152 ~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~ 227 (347)
T 4fmz_A 152 SNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLK 227 (347)
T ss_dssp TTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEE
T ss_pred hhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-cccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEE
Confidence 888888888888888777776 7788888888888876 777775 7788888888888887777665 55666666554
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.09 E-value=9.3e-11 Score=120.08 Aligned_cols=146 Identities=14% Similarity=0.132 Sum_probs=114.9
Q ss_pred cCceEEEEEEcCCCCccc-cccccccccchhhhccchhhhhhhhhH-HHHhhhCCccceeeeccccccccccchhhhccc
Q 005860 491 QEKLRHSMLVLGYEASFP-ISIFKAKNLRSLFINNTLIQVSLTHVL-QSLFDQLKCLRALRIATLMNTWDVNSTNKILKG 568 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~ 568 (673)
..+++.+.+..+.....+ ..+..+++|++|++++|..... .... +..+..+++|++|++++ +.+..++..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~~~~~l~~L~~L~Ls~-------N~l~~l~~~ 215 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGE-RGLMAALCPHKFPAIQNLALRN-------TGMETPTGV 215 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHH-HHHHTTSCTTSSCCCCSCBCCS-------SCCCCHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccc-hhhhHHHhhhcCCCCCEEECCC-------CCCCchHHH
Confidence 567899999988876655 4567899999999999863111 1111 22346889999999999 887665542
Q ss_pred ----cccccccccceecCCCCccc-chhhhcC---CCccEEEeccCCCCccccccccccccCCeeeccccccccccccCC
Q 005860 569 ----IEKLIHLRYLRLVGLGTEEL-PETCCEL---LNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKGIQ 640 (673)
Q Consensus 569 ----i~~L~~Lr~L~L~~~~i~~L-P~~i~~L---~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~i~ 640 (673)
++.+++|++|+|++|.+..+ |+.++.+ ++|++|++++|. +..+|..+. ++|++|++++|.++.+|. +.
T Consensus 216 ~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~ 291 (310)
T 4glp_A 216 CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PD 291 (310)
T ss_dssp HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCCC--SCCSCEECCSCCCCSCCC-TT
T ss_pred HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhhhc--CCCCEEECCCCcCCCCch-hh
Confidence 57889999999999998887 8888887 699999999976 889998875 799999999999998875 56
Q ss_pred CCCCCCcC
Q 005860 641 RLTNLRTL 648 (673)
Q Consensus 641 ~L~~L~~L 648 (673)
.+++|+.|
T Consensus 292 ~l~~L~~L 299 (310)
T 4glp_A 292 ELPEVDNL 299 (310)
T ss_dssp SCCCCSCE
T ss_pred hCCCccEE
Confidence 66666655
No 78
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.09 E-value=3.8e-11 Score=119.80 Aligned_cols=121 Identities=20% Similarity=0.192 Sum_probs=101.1
Q ss_pred ccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccccccccccccceecCCCCcccc
Q 005860 510 SIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIEKLIHLRYLRLVGLGTEELP 589 (673)
Q Consensus 510 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP 589 (673)
.+..+++|++|.+.++... .++ .+..+++|+.|++++ +.+..+|+ +..+++|++|+|++|.+..+|
T Consensus 36 ~~~~l~~L~~L~l~~n~i~-----~l~-~l~~l~~L~~L~L~~-------N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~ 101 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQ-----SLA-GMQFFTNLKELHLSH-------NQISDLSP-LKDLTKLEELSVNRNRLKNLN 101 (263)
T ss_dssp CHHHHTTCSEEECTTSCCC-----CCT-TGGGCTTCCEEECCS-------SCCCCCGG-GTTCSSCCEEECCSSCCSCCT
T ss_pred chhhcCcCcEEECcCCCcc-----cch-HHhhCCCCCEEECCC-------CccCCChh-hccCCCCCEEECCCCccCCcC
Confidence 4567889999999988641 123 467899999999999 99888887 999999999999999999998
Q ss_pred hhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccccccccCCCCCCCCcCC
Q 005860 590 ETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKGIQRLTNLRTLS 649 (673)
Q Consensus 590 ~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~i~~L~~L~~L~ 649 (673)
.... .+|++|++++|. +..+| .++++++|++|++++|.++.+| .++.+++|+.|.
T Consensus 102 ~~~~--~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~ 156 (263)
T 1xeu_A 102 GIPS--ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLD 156 (263)
T ss_dssp TCCC--SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEE
T ss_pred cccc--CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEE
Confidence 6444 999999999986 88887 6999999999999999999986 577777766653
No 79
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.08 E-value=3.2e-11 Score=133.96 Aligned_cols=147 Identities=18% Similarity=0.278 Sum_probs=113.9
Q ss_pred cCceEEEEEEcCCCCcc-ccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccc-
Q 005860 491 QEKLRHSMLVLGYEASF-PISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKG- 568 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~- 568 (673)
...++++.+..+..... +..+..+++|++|.+.++.. ....+..|.++++|++|++++ +.+..+|+.
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~Ls~-------n~l~~~~~~~ 93 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI----NTIEGDAFYSLGSLEHLDLSD-------NHLSSLSSSW 93 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCC----CEECTTTTTTCTTCCEEECTT-------SCCCSCCHHH
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCc----CccChhhccccccCCEEECCC-------CccCccCHHH
Confidence 35788888888877555 34577889999999988763 344556678889999999998 887777665
Q ss_pred cccccccccceecCCCCcc--cchhhhcCCCccEEEeccCCCCcccc-ccccccccCCeeecccccccc-ccccCCCCCC
Q 005860 569 IEKLIHLRYLRLVGLGTEE--LPETCCELLNLQVLEIEQCTSLKRLP-LGIGKLVNLRHLTYDDSCLEF-IPKGIQRLTN 644 (673)
Q Consensus 569 i~~L~~Lr~L~L~~~~i~~--LP~~i~~L~~L~~L~l~~c~~l~~lP-~~i~~L~~Lr~L~l~~~~l~~-lP~~i~~L~~ 644 (673)
++.+++|++|+|++|.+.. .|..++++++|++|++++|..+..+| ..++++++|++|++++|.+.. .|..++++++
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 173 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence 8889999999999998774 46788889999999999877677777 478888999999988888775 5666766665
Q ss_pred CCcC
Q 005860 645 LRTL 648 (673)
Q Consensus 645 L~~L 648 (673)
|+.|
T Consensus 174 L~~L 177 (549)
T 2z81_A 174 IHHL 177 (549)
T ss_dssp EEEE
T ss_pred CceE
Confidence 5544
No 80
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.08 E-value=7.8e-11 Score=113.03 Aligned_cols=124 Identities=27% Similarity=0.428 Sum_probs=103.4
Q ss_pred ccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccc-cccccccccceecCCCCcccchh-
Q 005860 514 AKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKG-IEKLIHLRYLRLVGLGTEELPET- 591 (673)
Q Consensus 514 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~-i~~L~~Lr~L~L~~~~i~~LP~~- 591 (673)
.++|++|.+.++.. ....+..|..+++|+.|++++ +.+..+|.. +..+.+|++|+|++|.+..+|..
T Consensus 27 ~~~l~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~-------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 95 (208)
T 2o6s_A 27 PAQTTYLDLETNSL----KSLPNGVFDELTSLTQLYLGG-------NKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV 95 (208)
T ss_dssp CTTCSEEECCSSCC----CCCCTTTTTTCTTCSEEECCS-------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCcEEEcCCCcc----CcCChhhhcccccCcEEECCC-------CccCccChhhcCCCCCcCEEECCCCcCCccCHhH
Confidence 46899999998863 344555678999999999999 888888765 58899999999999999998865
Q ss_pred hhcCCCccEEEeccCCCCcccccc-ccccccCCeeecccccccccccc-CCCCCCCCcCC
Q 005860 592 CCELLNLQVLEIEQCTSLKRLPLG-IGKLVNLRHLTYDDSCLEFIPKG-IQRLTNLRTLS 649 (673)
Q Consensus 592 i~~L~~L~~L~l~~c~~l~~lP~~-i~~L~~Lr~L~l~~~~l~~lP~~-i~~L~~L~~L~ 649 (673)
+..+++|++|+++++. +..+|.. ++++++|++|++++|.+..+|.. ++.+++|+.|.
T Consensus 96 ~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 154 (208)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred hcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEE
Confidence 6899999999999976 8888865 78999999999999999988876 56677666653
No 81
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.08 E-value=1.5e-10 Score=119.74 Aligned_cols=145 Identities=16% Similarity=0.196 Sum_probs=70.5
Q ss_pred CceEEEEEEcCCCCcccc-ccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccccc
Q 005860 492 EKLRHSMLVLGYEASFPI-SIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIE 570 (673)
Q Consensus 492 ~~~r~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~ 570 (673)
.+++.+.+..+.....++ .+..+++|++|.+.++... .....+..|.++++|+.|++++ +.+..+|..+.
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~~~l~~L~~L~l~~-------n~l~~l~~~~~ 191 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK--SSGIENGAFQGMKKLSYIRIAD-------TNITTIPQGLP 191 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC--GGGBCTTGGGGCTTCCEEECCS-------SCCCSCCSSCC
T ss_pred ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCC--ccCcChhhccCCCCcCEEECCC-------CccccCCcccc
Confidence 356666666555544433 2445666666666665421 0112334455666666666665 54444444333
Q ss_pred cccccccceecCCCCccc-chhhhcCCCccEEEeccCCCCccccc-cccccccCCeeeccccccccccccCCCCCCCCcC
Q 005860 571 KLIHLRYLRLVGLGTEEL-PETCCELLNLQVLEIEQCTSLKRLPL-GIGKLVNLRHLTYDDSCLEFIPKGIQRLTNLRTL 648 (673)
Q Consensus 571 ~L~~Lr~L~L~~~~i~~L-P~~i~~L~~L~~L~l~~c~~l~~lP~-~i~~L~~Lr~L~l~~~~l~~lP~~i~~L~~L~~L 648 (673)
.+|++|+|++|.+..+ |..+..+++|++|++++|. +..+|. .++.+++|++|++++|.+..+|.++..+++|++|
T Consensus 192 --~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L 268 (330)
T 1xku_A 192 --PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVV 268 (330)
T ss_dssp --TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEE
T ss_pred --ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEE
Confidence 4455555555544443 3444445555555555443 333332 3444455555555555444454444444444433
No 82
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.08 E-value=6.2e-11 Score=135.31 Aligned_cols=148 Identities=16% Similarity=0.184 Sum_probs=121.1
Q ss_pred ccCceEEEEEEcCCCCcccc-ccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhcc-
Q 005860 490 YQEKLRHSMLVLGYEASFPI-SIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILK- 567 (673)
Q Consensus 490 ~~~~~r~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~- 567 (673)
.+.+++++.+..+.....++ .+..+++|++|++.++. +....+..|.++++|++|++++ +.+..+|+
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~L~~-------n~l~~l~~~ 91 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT----ISKLEPELCQKLPMLKVLNLQH-------NELSQLSDK 91 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC----CCCCCTTHHHHCTTCCEEECCS-------SCCCCCCTT
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc----cCccCHHHHhcccCcCEEECCC-------CccCccChh
Confidence 34689999999888766665 47789999999999876 3345567789999999999999 88888887
Q ss_pred ccccccccccceecCCCCcccc-hhhhcCCCccEEEeccCCCCcc-ccccccccccCCeeecccccccccccc-C--CCC
Q 005860 568 GIEKLIHLRYLRLVGLGTEELP-ETCCELLNLQVLEIEQCTSLKR-LPLGIGKLVNLRHLTYDDSCLEFIPKG-I--QRL 642 (673)
Q Consensus 568 ~i~~L~~Lr~L~L~~~~i~~LP-~~i~~L~~L~~L~l~~c~~l~~-lP~~i~~L~~Lr~L~l~~~~l~~lP~~-i--~~L 642 (673)
.++.+.+|++|+|++|.+..+| ..++++++|++|++++|. +.. .|..++++++|++|++++|.+..+|.. + ..+
T Consensus 92 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 170 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170 (680)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTT
T ss_pred hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCcccccCHHHhhcccc
Confidence 5999999999999999988887 679999999999999987 544 456789999999999999988877653 2 234
Q ss_pred CCCCcCC
Q 005860 643 TNLRTLS 649 (673)
Q Consensus 643 ~~L~~L~ 649 (673)
++|+.|.
T Consensus 171 ~~L~~L~ 177 (680)
T 1ziw_A 171 SSLKKLE 177 (680)
T ss_dssp CEESEEE
T ss_pred ccccEEE
Confidence 5566553
No 83
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.08 E-value=4.6e-11 Score=134.98 Aligned_cols=146 Identities=18% Similarity=0.214 Sum_probs=112.9
Q ss_pred ccCceEEEEEEcCCCCcccc-ccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhcc-
Q 005860 490 YQEKLRHSMLVLGYEASFPI-SIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILK- 567 (673)
Q Consensus 490 ~~~~~r~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~- 567 (673)
.+..++++.+..+....+++ .+..+++|++|+++++.+ ....+..|.++++|++|+|++ +.+..+|+
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i----~~i~~~~f~~L~~L~~L~Ls~-------N~l~~l~~~ 118 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI----QTIEDGAYQSLSHLSTLILTG-------NPIQSLALG 118 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC----CEECTTTTTTCTTCCEEECTT-------CCCCEECGG
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC----CCcChhHhcCCCCCCEEEccC-------CcCCCCCHH
Confidence 35678888888888776654 567788999999988763 344556788889999999998 88888775
Q ss_pred ccccccccccceecCCCCcccch-hhhcCCCccEEEeccCCCCc--cccccccccccCCeeeccccccccccc-cCCCCC
Q 005860 568 GIEKLIHLRYLRLVGLGTEELPE-TCCELLNLQVLEIEQCTSLK--RLPLGIGKLVNLRHLTYDDSCLEFIPK-GIQRLT 643 (673)
Q Consensus 568 ~i~~L~~Lr~L~L~~~~i~~LP~-~i~~L~~L~~L~l~~c~~l~--~lP~~i~~L~~Lr~L~l~~~~l~~lP~-~i~~L~ 643 (673)
.+..|.+|++|+|++|.+..+|+ .+++|++|++|++++|. +. .+|..+++|++|++|++++|.++.++. .+..++
T Consensus 119 ~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 197 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 197 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccccccccccchh
Confidence 47888999999999998888875 58889999999998876 54 357788889999999988888877653 355555
Q ss_pred CCCc
Q 005860 644 NLRT 647 (673)
Q Consensus 644 ~L~~ 647 (673)
+++.
T Consensus 198 ~l~~ 201 (635)
T 4g8a_A 198 QMPL 201 (635)
T ss_dssp TCTT
T ss_pred hhhh
Confidence 4443
No 84
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.08 E-value=6.7e-11 Score=125.38 Aligned_cols=127 Identities=20% Similarity=0.246 Sum_probs=107.8
Q ss_pred ccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhcc-ccccccccccceecCCCCcccc-
Q 005860 512 FKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILK-GIEKLIHLRYLRLVGLGTEELP- 589 (673)
Q Consensus 512 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~-~i~~L~~Lr~L~L~~~~i~~LP- 589 (673)
..+++++.|.+.++. +...++..|..+++|++|++++ +.+..+++ .+..+++|++|+|++|.+..+|
T Consensus 42 ~~l~~l~~l~l~~~~----l~~l~~~~~~~l~~L~~L~L~~-------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 110 (390)
T 3o6n_A 42 ITLNNQKIVTFKNST----MRKLPAALLDSFRQVELLNLND-------LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP 110 (390)
T ss_dssp GGGCCCSEEEEESCE----ESEECTHHHHHCCCCSEEECTT-------SCCCEECTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cccCCceEEEecCCc----hhhCChhHhcccccCcEEECCC-------CcccccChhhccCCCCcCEEECCCCCCCcCCH
Confidence 357899999998876 3345566788999999999999 88887765 8999999999999999988886
Q ss_pred hhhhcCCCccEEEeccCCCCcccccc-ccccccCCeeecccccccccccc-CCCCCCCCcCCe
Q 005860 590 ETCCELLNLQVLEIEQCTSLKRLPLG-IGKLVNLRHLTYDDSCLEFIPKG-IQRLTNLRTLSE 650 (673)
Q Consensus 590 ~~i~~L~~L~~L~l~~c~~l~~lP~~-i~~L~~Lr~L~l~~~~l~~lP~~-i~~L~~L~~L~~ 650 (673)
..++++++|++|++++|. +..+|.. ++++++|++|++++|.+..+|+. ++.+++|++|..
T Consensus 111 ~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 172 (390)
T 3o6n_A 111 HVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 172 (390)
T ss_dssp TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEEC
T ss_pred HHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEEC
Confidence 458999999999999976 9999987 48999999999999999888654 778888877743
No 85
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.08 E-value=1.2e-10 Score=119.50 Aligned_cols=169 Identities=17% Similarity=0.113 Sum_probs=124.0
Q ss_pred ccCceEEEEEEcCCCCccccccccc-----cccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhh
Q 005860 490 YQEKLRHSMLVLGYEASFPISIFKA-----KNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNK 564 (673)
Q Consensus 490 ~~~~~r~l~l~~~~~~~~~~~~~~~-----~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~ 564 (673)
...+++++.+..+.....|..+..+ ++|++|.+.++.. ....+..|..+++|+.|++++ +.+..
T Consensus 119 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l----~~~~~~~~~~l~~L~~L~Ls~-------N~l~~ 187 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS----LNFSCEQVRVFPALSTLDLSD-------NPELG 187 (312)
T ss_dssp CSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSC----CCCCTTTCCCCSSCCEEECCS-------CTTCH
T ss_pred cCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCC----ccchHHHhccCCCCCEEECCC-------CCcCc
Confidence 4568999999998887666656555 8999999999873 344556788999999999999 87432
Q ss_pred ---hcccc--ccccccccceecCCCCcccc---h-hhhcCCCccEEEeccCCCCcccc--ccccccccCCeeeccccccc
Q 005860 565 ---ILKGI--EKLIHLRYLRLVGLGTEELP---E-TCCELLNLQVLEIEQCTSLKRLP--LGIGKLVNLRHLTYDDSCLE 633 (673)
Q Consensus 565 ---lp~~i--~~L~~Lr~L~L~~~~i~~LP---~-~i~~L~~L~~L~l~~c~~l~~lP--~~i~~L~~Lr~L~l~~~~l~ 633 (673)
+|..+ +.+++|++|+|++|.+..+| . .+..+++|++|++++|. +...+ ..+..+++|++|++++|.++
T Consensus 188 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCCccC
Confidence 45555 88999999999999988554 2 33578999999999977 76654 45677899999999999999
Q ss_pred cccccCCCCCCCCcCCeeEEccCCccCCCccccCCCCCC
Q 005860 634 FIPKGIQRLTNLRTLSEFVVVRGGSKYGGKACNLEGLRY 672 (673)
Q Consensus 634 ~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~ 672 (673)
.+|..+. ++|+.|..-.-.-.....+..+.+|+.|.+
T Consensus 267 ~ip~~~~--~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L 303 (312)
T 1wwl_A 267 QVPKGLP--AKLSVLDLSYNRLDRNPSPDELPQVGNLSL 303 (312)
T ss_dssp SCCSSCC--SEEEEEECCSSCCCSCCCTTTSCEEEEEEC
T ss_pred hhhhhcc--CCceEEECCCCCCCCChhHhhCCCCCEEec
Confidence 9998876 566655322111111011445566665544
No 86
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.07 E-value=3.4e-11 Score=123.79 Aligned_cols=147 Identities=11% Similarity=0.034 Sum_probs=98.9
Q ss_pred CceEEEEEEcCCCCcccc-ccccccccchhhhccchhhhhhhhhHHH-HhhhCCccceeeeccccccccccchhhhcccc
Q 005860 492 EKLRHSMLVLGYEASFPI-SIFKAKNLRSLFINNTLIQVSLTHVLQS-LFDQLKCLRALRIATLMNTWDVNSTNKILKGI 569 (673)
Q Consensus 492 ~~~r~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i 569 (673)
.+++.+.+..+.....++ .+..+++|++|++.++.. ....+. ++..++.|++|++++ +.+..+|...
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l----~~~~~~~~~~~l~~L~~L~L~~-------N~l~~~~~~~ 188 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI----DTVNFAELAASSDTLEHLNLQY-------NFIYDVKGQV 188 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC----CEEEGGGGGGGTTTCCEEECTT-------SCCCEEECCC
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC----CcccHHHHhhccCcCCEEECCC-------CcCccccccc
Confidence 456777777666655433 455677777777777653 122222 234667778888777 7766665433
Q ss_pred ccccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccc--cccccCCCCCCCCc
Q 005860 570 EKLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLE--FIPKGIQRLTNLRT 647 (673)
Q Consensus 570 ~~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~--~lP~~i~~L~~L~~ 647 (673)
.+++|++|+|++|.+..+|+.+..+++|++|++++|. +..+|..+..+++|++|++++|.+. .+|..++.+++|+.
T Consensus 189 -~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~ 266 (317)
T 3o53_A 189 -VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266 (317)
T ss_dssp -CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHH
T ss_pred -ccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceE
Confidence 4777888888887777777777777888888887765 7777777777778888887777766 55566666666666
Q ss_pred CCee
Q 005860 648 LSEF 651 (673)
Q Consensus 648 L~~~ 651 (673)
|...
T Consensus 267 l~l~ 270 (317)
T 3o53_A 267 VAKQ 270 (317)
T ss_dssp HHHH
T ss_pred EECC
Confidence 5443
No 87
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.07 E-value=1e-10 Score=120.27 Aligned_cols=143 Identities=12% Similarity=0.102 Sum_probs=115.5
Q ss_pred CceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhc-ccc-
Q 005860 492 EKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKIL-KGI- 569 (673)
Q Consensus 492 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp-~~i- 569 (673)
.+++.+.+..+.....+.. .+++|++|.+.++.. ....+..|..++.|+.|++++ +.+..++ ..+
T Consensus 99 ~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l----~~~~~~~~~~l~~L~~L~Ls~-------N~l~~~~~~~~~ 165 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCS--RGQGKKNIYLANNKI----TMLRDLDEGCRSRVQYLDLKL-------NEIDTVNFAELA 165 (317)
T ss_dssp TTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCC----CSGGGBCTGGGSSEEEEECTT-------SCCCEEEGGGGG
T ss_pred CCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCC----CCccchhhhccCCCCEEECCC-------CCCCcccHHHHh
Confidence 5677777777766555433 367899999998873 334455678899999999999 8877653 444
Q ss_pred ccccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccccccccCCCCCCCCcCC
Q 005860 570 EKLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKGIQRLTNLRTLS 649 (673)
Q Consensus 570 ~~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~i~~L~~L~~L~ 649 (673)
..+++|++|+|++|.+..+|.. ..+++|++|++++|. +..+|..+..+++|++|++++|.+..+|..++.+++|+.|.
T Consensus 166 ~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~ 243 (317)
T 3o53_A 166 ASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFD 243 (317)
T ss_dssp GGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEE
T ss_pred hccCcCCEEECCCCcCcccccc-cccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEE
Confidence 4789999999999999999764 459999999999976 99999999999999999999999999998888777777664
No 88
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.07 E-value=8.5e-11 Score=132.75 Aligned_cols=131 Identities=24% Similarity=0.278 Sum_probs=110.6
Q ss_pred CccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhcc-ccccccccccceecCC
Q 005860 505 ASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILK-GIEKLIHLRYLRLVGL 583 (673)
Q Consensus 505 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~-~i~~L~~Lr~L~L~~~ 583 (673)
..+|..+ .++++.|+++++. +....+..|.++++|++|+|++ +.+..+|+ .+..|++|++|+|++|
T Consensus 44 ~~vP~~l--p~~~~~LdLs~N~----i~~l~~~~f~~l~~L~~L~Ls~-------N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 44 YKIPDNL--PFSTKNLDLSFNP----LRHLGSYSFFSFPELQVLDLSR-------CEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp SSCCSSS--CTTCCEEECTTSC----CCEECTTTTTTCTTCCEEECTT-------CCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CccCCCC--CcCCCEEEeeCCC----CCCCCHHHHhCCCCCCEEECCC-------CcCCCcChhHhcCCCCCCEEEccCC
Confidence 4556544 3579999999987 3445567789999999999999 99988866 5899999999999999
Q ss_pred CCcccch-hhhcCCCccEEEeccCCCCccccc-cccccccCCeeecccccccc--ccccCCCCCCCCcCC
Q 005860 584 GTEELPE-TCCELLNLQVLEIEQCTSLKRLPL-GIGKLVNLRHLTYDDSCLEF--IPKGIQRLTNLRTLS 649 (673)
Q Consensus 584 ~i~~LP~-~i~~L~~L~~L~l~~c~~l~~lP~-~i~~L~~Lr~L~l~~~~l~~--lP~~i~~L~~L~~L~ 649 (673)
.++.+|+ .+.+|++|++|++++|. +..+|. .|++|++|++|++++|.+.. +|..++.+++|++|.
T Consensus 111 ~l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 179 (635)
T 4g8a_A 111 PIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 179 (635)
T ss_dssp CCCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred cCCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhc
Confidence 9999985 57999999999999986 888886 58999999999999998875 466788888888774
No 89
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.06 E-value=5.2e-11 Score=124.40 Aligned_cols=139 Identities=24% Similarity=0.195 Sum_probs=112.2
Q ss_pred EcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhc-cccccccccccc
Q 005860 500 VLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKIL-KGIEKLIHLRYL 578 (673)
Q Consensus 500 ~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp-~~i~~L~~Lr~L 578 (673)
..+....+|..+. ++|++|.+.++.. ....+..|.++++|+.|++++ +.+..++ ..++.+++|++|
T Consensus 39 ~~~~l~~iP~~~~--~~L~~L~l~~n~i----~~~~~~~~~~l~~L~~L~L~~-------n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 39 SSGSLNSIPSGLT--EAVKSLDLSNNRI----TYISNSDLQRCVNLQALVLTS-------NGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp CSTTCSSCCTTCC--TTCCEEECTTSCC----CEECTTTTTTCTTCCEEECTT-------SCCCEECTTTTTTCTTCCEE
T ss_pred CCCCccccccccc--ccCcEEECCCCcC----cccCHHHhccCCCCCEEECCC-------CccCccCHhhcCCCCCCCEE
Confidence 3344455665443 5899999998863 334445688999999999999 8887764 569999999999
Q ss_pred eecCCCCcccchh-hhcCCCccEEEeccCCCCccccc--cccccccCCeeecccc-cccccc-ccCCCCCCCCcCCeeE
Q 005860 579 RLVGLGTEELPET-CCELLNLQVLEIEQCTSLKRLPL--GIGKLVNLRHLTYDDS-CLEFIP-KGIQRLTNLRTLSEFV 652 (673)
Q Consensus 579 ~L~~~~i~~LP~~-i~~L~~L~~L~l~~c~~l~~lP~--~i~~L~~Lr~L~l~~~-~l~~lP-~~i~~L~~L~~L~~~~ 652 (673)
+|++|.+..+|.. ++++++|++|++++|. +..+|. .++++++|++|++++| .+..+| ..++++++|+.|..-.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 9999999999976 8999999999999976 889997 6899999999999887 477765 4588888888775543
No 90
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.06 E-value=2.1e-12 Score=123.04 Aligned_cols=135 Identities=21% Similarity=0.179 Sum_probs=109.5
Q ss_pred CccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccccccccccccceecCCC
Q 005860 505 ASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIEKLIHLRYLRLVGLG 584 (673)
Q Consensus 505 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~ 584 (673)
..++..+..+++|++|.+.++.. .. ++ .+..+++|+.|++++ +.+..+|..+..+++|++|+|++|.
T Consensus 38 ~~l~~~~~~l~~L~~L~ls~n~l----~~-l~-~~~~l~~L~~L~l~~-------n~l~~l~~~~~~~~~L~~L~L~~N~ 104 (198)
T 1ds9_A 38 EKMDATLSTLKACKHLALSTNNI----EK-IS-SLSGMENLRILSLGR-------NLIKKIENLDAVADTLEELWISYNQ 104 (198)
T ss_dssp CCCHHHHHHTTTCSEEECSEEEE----SC-CC-CHHHHTTCCEEEEEE-------EEECSCSSHHHHHHHCSEEEEEEEE
T ss_pred hhhhHHHhcCCCCCEEECCCCCC----cc-cc-ccccCCCCCEEECCC-------CCcccccchhhcCCcCCEEECcCCc
Confidence 34455677889999999998864 12 34 677889999999999 8888888888888999999999999
Q ss_pred CcccchhhhcCCCccEEEeccCCCCccccc--cccccccCCeeecccccccccccc-----------CCCCCCCCcCCee
Q 005860 585 TEELPETCCELLNLQVLEIEQCTSLKRLPL--GIGKLVNLRHLTYDDSCLEFIPKG-----------IQRLTNLRTLSEF 651 (673)
Q Consensus 585 i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~--~i~~L~~Lr~L~l~~~~l~~lP~~-----------i~~L~~L~~L~~~ 651 (673)
+..+| .++.+++|++|++++|. +..+|. .+..+++|++|++++|.+...++. +..+++|+.|++.
T Consensus 105 l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~ 182 (198)
T 1ds9_A 105 IASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGM 182 (198)
T ss_dssp CCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCG
T ss_pred CCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCc
Confidence 98888 68999999999999876 887775 688999999999999888665433 6788888888755
Q ss_pred EEc
Q 005860 652 VVV 654 (673)
Q Consensus 652 ~~~ 654 (673)
.+.
T Consensus 183 ~i~ 185 (198)
T 1ds9_A 183 PVD 185 (198)
T ss_dssp GGT
T ss_pred ccC
Confidence 444
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.06 E-value=1.9e-11 Score=126.67 Aligned_cols=147 Identities=16% Similarity=0.143 Sum_probs=81.8
Q ss_pred CceEEEEEEcCCCCc--cccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeecccccccccc-chh--hhc
Q 005860 492 EKLRHSMLVLGYEAS--FPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVN-STN--KIL 566 (673)
Q Consensus 492 ~~~r~l~l~~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~--~lp 566 (673)
.+++++.+..+.... ++..+..+++|++|.+.++.. ....+..+..+++|+.|++++ + .+. .++
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l----~~~~~~~l~~~~~L~~L~L~~-------~~~l~~~~l~ 161 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL----SDPIVNTLAKNSNLVRLNLSG-------CSGFSEFALQ 161 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBC----CHHHHHHHTTCTTCSEEECTT-------CBSCCHHHHH
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCccc----CHHHHHHHhcCCCCCEEECCC-------CCCCCHHHHH
Confidence 456666665554321 333445566677776666542 223444555566666666666 5 333 245
Q ss_pred cccccccccccceecCC-CCcc--cchhhhcCC-CccEEEeccCC-CC--ccccccccccccCCeeeccccc-cc-cccc
Q 005860 567 KGIEKLIHLRYLRLVGL-GTEE--LPETCCELL-NLQVLEIEQCT-SL--KRLPLGIGKLVNLRHLTYDDSC-LE-FIPK 637 (673)
Q Consensus 567 ~~i~~L~~Lr~L~L~~~-~i~~--LP~~i~~L~-~L~~L~l~~c~-~l--~~lP~~i~~L~~Lr~L~l~~~~-l~-~lP~ 637 (673)
..+..+++|++|+|++| .+.. +|..+..++ +|++|++++|. .+ ..+|..+.++++|++|++++|. ++ ..|.
T Consensus 162 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 241 (336)
T 2ast_B 162 TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 241 (336)
T ss_dssp HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG
T ss_pred HHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH
Confidence 55666666666666666 4543 555566666 66666666653 13 3455555666666666666655 32 3344
Q ss_pred cCCCCCCCCcCC
Q 005860 638 GIQRLTNLRTLS 649 (673)
Q Consensus 638 ~i~~L~~L~~L~ 649 (673)
.++++++|+.|.
T Consensus 242 ~l~~l~~L~~L~ 253 (336)
T 2ast_B 242 EFFQLNYLQHLS 253 (336)
T ss_dssp GGGGCTTCCEEE
T ss_pred HHhCCCCCCEee
Confidence 455555555543
No 92
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.06 E-value=1e-10 Score=127.49 Aligned_cols=146 Identities=10% Similarity=0.038 Sum_probs=88.5
Q ss_pred CceEEEEEEcCCCCcc-ccccccccccchhhhccchhhhhhhhhHHHHh-hhCCccceeeeccccccccccchhhhcccc
Q 005860 492 EKLRHSMLVLGYEASF-PISIFKAKNLRSLFINNTLIQVSLTHVLQSLF-DQLKCLRALRIATLMNTWDVNSTNKILKGI 569 (673)
Q Consensus 492 ~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i 569 (673)
.+++.+.+..+..... +..+..+++|++|++++|.+ ....+..+ ..+++|+.|+|++ |.+..+|..
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l----~~~~~~~l~~~l~~L~~L~Ls~-------N~l~~~~~~- 187 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI----DTVNFAELAASSDTLEHLNLQY-------NFIYDVKGQ- 187 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCC----CEEEGGGGGGGTTTCCEEECTT-------SCCCEEECC-
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCC----CCcChHHHhhhCCcccEEecCC-------Ccccccccc-
Confidence 4566666666655443 33455566677776666653 12222222 3566677777776 666555443
Q ss_pred ccccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccc--cccccCCCCCCCCc
Q 005860 570 EKLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLE--FIPKGIQRLTNLRT 647 (673)
Q Consensus 570 ~~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~--~lP~~i~~L~~L~~ 647 (673)
..+++|++|+|++|.+..+|+.++.+++|++|++++|. +..+|..++.+++|++|++++|.+. .+|..++.++.|+.
T Consensus 188 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~ 266 (487)
T 3oja_A 188 VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266 (487)
T ss_dssp CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHH
T ss_pred ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcE
Confidence 34666777777777766676667677777777777654 6666766666777777776666665 55555666666555
Q ss_pred CCe
Q 005860 648 LSE 650 (673)
Q Consensus 648 L~~ 650 (673)
|..
T Consensus 267 l~~ 269 (487)
T 3oja_A 267 VAK 269 (487)
T ss_dssp HHH
T ss_pred Eec
Confidence 543
No 93
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.06 E-value=1.1e-10 Score=122.25 Aligned_cols=143 Identities=20% Similarity=0.221 Sum_probs=111.8
Q ss_pred ccCceEEEEEEcCCCCcccccc-c-cccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhcc
Q 005860 490 YQEKLRHSMLVLGYEASFPISI-F-KAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILK 567 (673)
Q Consensus 490 ~~~~~r~l~l~~~~~~~~~~~~-~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~ 567 (673)
.+..++.+.+..+....+++.. . .+++|++|.+.++.+ ....+..|.++++|+.|+|++ +.+..+|+
T Consensus 37 ~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i----~~i~~~~~~~l~~L~~L~Ls~-------N~l~~~~~ 105 (361)
T 2xot_A 37 LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL----NFISSEAFVPVPNLRYLDLSS-------NHLHTLDE 105 (361)
T ss_dssp CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCC----CEECTTTTTTCTTCCEEECCS-------SCCCEECT
T ss_pred CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcC----CccChhhccCCCCCCEEECCC-------CcCCcCCH
Confidence 3456788888888776665543 3 788999999988763 344456688899999999999 88888765
Q ss_pred -ccccccccccceecCCCCccc-chhhhcCCCccEEEeccCCCCccccccc----cccccCCeeecccccccccccc-CC
Q 005860 568 -GIEKLIHLRYLRLVGLGTEEL-PETCCELLNLQVLEIEQCTSLKRLPLGI----GKLVNLRHLTYDDSCLEFIPKG-IQ 640 (673)
Q Consensus 568 -~i~~L~~Lr~L~L~~~~i~~L-P~~i~~L~~L~~L~l~~c~~l~~lP~~i----~~L~~Lr~L~l~~~~l~~lP~~-i~ 640 (673)
.+..+.+|++|+|++|.+..+ |..+..|++|++|+|++|. +..+|..+ .++++|++|++++|.+..+|.. +.
T Consensus 106 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 184 (361)
T 2xot_A 106 FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQ 184 (361)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHH
T ss_pred HHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhh
Confidence 578899999999999998877 5688899999999999876 88898765 6789999999999998888743 44
Q ss_pred CCCC
Q 005860 641 RLTN 644 (673)
Q Consensus 641 ~L~~ 644 (673)
.+++
T Consensus 185 ~l~~ 188 (361)
T 2xot_A 185 KLPA 188 (361)
T ss_dssp HSCH
T ss_pred hccH
Confidence 4444
No 94
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.06 E-value=1.1e-10 Score=135.03 Aligned_cols=146 Identities=21% Similarity=0.228 Sum_probs=86.9
Q ss_pred CceEEEEEEcCCCC-ccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchh-hhcccc
Q 005860 492 EKLRHSMLVLGYEA-SFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTN-KILKGI 569 (673)
Q Consensus 492 ~~~r~l~l~~~~~~-~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~-~lp~~i 569 (673)
..++.+.+..+... ..|..+..+++|++|.+.++.. ....|..|..+++|+.|++++ +.+. .+|..+
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l----~~~~p~~l~~l~~L~~L~L~~-------n~l~~~~p~~~ 462 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL----SGTIPSSLGSLSKLRDLKLWL-------NMLEGEIPQEL 462 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE----ESCCCGGGGGCTTCCEEECCS-------SCCCSCCCGGG
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcc----cCcccHHHhcCCCCCEEECCC-------CcccCcCCHHH
Confidence 34666666555443 3455566667777777766652 223445556666666666666 5544 455666
Q ss_pred ccccccccceecCCCCc-ccchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccc-cccccCCCCCCCCc
Q 005860 570 EKLIHLRYLRLVGLGTE-ELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLE-FIPKGIQRLTNLRT 647 (673)
Q Consensus 570 ~~L~~Lr~L~L~~~~i~-~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~-~lP~~i~~L~~L~~ 647 (673)
+.+++|++|+|++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|.+. .+|..++++++|+.
T Consensus 463 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 542 (768)
T 3rgz_A 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCE
T ss_pred cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCE
Confidence 66666666666666644 55666666666666666665533356666666666666666666655 45555666665555
Q ss_pred C
Q 005860 648 L 648 (673)
Q Consensus 648 L 648 (673)
|
T Consensus 543 L 543 (768)
T 3rgz_A 543 L 543 (768)
T ss_dssp E
T ss_pred E
Confidence 4
No 95
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.05 E-value=6.6e-11 Score=132.05 Aligned_cols=144 Identities=19% Similarity=0.224 Sum_probs=111.8
Q ss_pred ccCceEEEEEEcCCCCcccc-ccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhc-c
Q 005860 490 YQEKLRHSMLVLGYEASFPI-SIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKIL-K 567 (673)
Q Consensus 490 ~~~~~r~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp-~ 567 (673)
.+..++++.+..+.....++ .+..+++|++|++.++.. ....+..|.++++|++|++++ +.+..+| .
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i----~~i~~~~~~~l~~L~~L~L~~-------n~l~~~~~~ 94 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI----QTIEDGAYQSLSHLSTLILTG-------NPIQSLALG 94 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCC----CEECTTTTTTCTTCCEEECTT-------CCCCEECTT
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcC----CccCcccccCchhCCEEeCcC-------CcCCccCHh
Confidence 34578888888877755543 567789999999988763 344556678889999999998 8877765 5
Q ss_pred ccccccccccceecCCCCcccch-hhhcCCCccEEEeccCCCCcc--ccccccccccCCeeecccccccccc-ccCCCCC
Q 005860 568 GIEKLIHLRYLRLVGLGTEELPE-TCCELLNLQVLEIEQCTSLKR--LPLGIGKLVNLRHLTYDDSCLEFIP-KGIQRLT 643 (673)
Q Consensus 568 ~i~~L~~Lr~L~L~~~~i~~LP~-~i~~L~~L~~L~l~~c~~l~~--lP~~i~~L~~Lr~L~l~~~~l~~lP-~~i~~L~ 643 (673)
.++.+.+|++|++++|.+..+|. .++++++|++|++++|. +.. +|..++++++|++|++++|.+..+| ..++.++
T Consensus 95 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 173 (570)
T 2z63_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173 (570)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHH
T ss_pred hhcCccccccccccccccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchh
Confidence 78888999999999988888875 68889999999998876 554 6888889999999998888877665 3455555
Q ss_pred CC
Q 005860 644 NL 645 (673)
Q Consensus 644 ~L 645 (673)
+|
T Consensus 174 ~L 175 (570)
T 2z63_A 174 QM 175 (570)
T ss_dssp TC
T ss_pred cc
Confidence 55
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.05 E-value=1.7e-11 Score=127.16 Aligned_cols=171 Identities=15% Similarity=0.131 Sum_probs=124.8
Q ss_pred CceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchh-hhccccc
Q 005860 492 EKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTN-KILKGIE 570 (673)
Q Consensus 492 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~-~lp~~i~ 570 (673)
..++.+.+..+.....++.+..+++|++|.+.++.. ....++..+..+++|+.|++++ +.+. ..|..++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l---~~~~~~~~~~~~~~L~~L~L~~-------~~l~~~~~~~l~ 139 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVI---EVSTLHGILSQCSKLQNLSLEG-------LRLSDPIVNTLA 139 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEE---CHHHHHHHHTTBCCCSEEECTT-------CBCCHHHHHHHT
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCc---CHHHHHHHHhhCCCCCEEeCcC-------cccCHHHHHHHh
Confidence 345666665555444455567889999999998863 1123677789999999999999 8755 5778889
Q ss_pred cccccccceecCC-CCc--ccchhhhcCCCccEEEeccCCCCcc--ccccccccc-cCCeeecccccc----ccccccCC
Q 005860 571 KLIHLRYLRLVGL-GTE--ELPETCCELLNLQVLEIEQCTSLKR--LPLGIGKLV-NLRHLTYDDSCL----EFIPKGIQ 640 (673)
Q Consensus 571 ~L~~Lr~L~L~~~-~i~--~LP~~i~~L~~L~~L~l~~c~~l~~--lP~~i~~L~-~Lr~L~l~~~~l----~~lP~~i~ 640 (673)
.+++|++|+|++| .+. .+|..+.++++|++|++++|..+.. +|..+.+++ +|++|++++|.+ ..+|..++
T Consensus 140 ~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~ 219 (336)
T 2ast_B 140 KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR 219 (336)
T ss_dssp TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH
T ss_pred cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh
Confidence 9999999999999 476 4888899999999999999944765 788899999 999999998843 45666666
Q ss_pred CCCCCCcCCeeEEcc---CCccCCCccccCCCCCC
Q 005860 641 RLTNLRTLSEFVVVR---GGSKYGGKACNLEGLRY 672 (673)
Q Consensus 641 ~L~~L~~L~~~~~~~---~~~~~~~~~~~l~~L~~ 672 (673)
++++|+.|..-.... .....+..+.+|+.|.+
T Consensus 220 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l 254 (336)
T 2ast_B 220 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSL 254 (336)
T ss_dssp HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeC
Confidence 777777765433321 11122344455555543
No 97
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.04 E-value=1.1e-10 Score=130.96 Aligned_cols=143 Identities=14% Similarity=0.158 Sum_probs=106.7
Q ss_pred cCceEEEEEEcCCCCccccc-cccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccc-
Q 005860 491 QEKLRHSMLVLGYEASFPIS-IFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKG- 568 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~- 568 (673)
..+++.+.+..+....+|+. +..+++|++|.+.++.. ....+..|..+++|+.|+|++ +.+..+|+.
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~-------n~l~~~~~~~ 118 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI----EEIDTYAFAYAHTIQKLYMGF-------NAIRYLPPHV 118 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC----CEECTTTTTTCTTCCEEECCS-------SCCCCCCTTT
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC----CCCChHHhcCCCCCCEEECCC-------CcCCCCCHHH
Confidence 35667777777766666655 34588888888888763 344555678888899999988 887776654
Q ss_pred cccccccccceecCCCCcccchhh-hcCCCccEEEeccCCCCcccc-ccccccccCCeeeccccccccccccCCCCCCCC
Q 005860 569 IEKLIHLRYLRLVGLGTEELPETC-CELLNLQVLEIEQCTSLKRLP-LGIGKLVNLRHLTYDDSCLEFIPKGIQRLTNLR 646 (673)
Q Consensus 569 i~~L~~Lr~L~L~~~~i~~LP~~i-~~L~~L~~L~l~~c~~l~~lP-~~i~~L~~Lr~L~l~~~~l~~lP~~i~~L~~L~ 646 (673)
++.+++|++|+|++|.+..+|+.+ +++++|++|+|++|. +..+| ..++++++|++|++++|.+..+| ++.+++|+
T Consensus 119 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~ 195 (597)
T 3oja_B 119 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLF 195 (597)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCS
T ss_pred HcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhh
Confidence 688889999999988888888764 788899999998876 65554 46888889999998888887765 33445544
Q ss_pred c
Q 005860 647 T 647 (673)
Q Consensus 647 ~ 647 (673)
.
T Consensus 196 ~ 196 (597)
T 3oja_B 196 H 196 (597)
T ss_dssp E
T ss_pred h
Confidence 4
No 98
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.04 E-value=4e-10 Score=124.20 Aligned_cols=148 Identities=20% Similarity=0.211 Sum_probs=119.9
Q ss_pred ccCceEEEEEEcCCCCc-cccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhh-hcc
Q 005860 490 YQEKLRHSMLVLGYEAS-FPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNK-ILK 567 (673)
Q Consensus 490 ~~~~~r~l~l~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~-lp~ 567 (673)
...+++.+.+..+.... .+..+..+++|++|.+.++... ....++..+..+++|+.|++++ +.+.. +|.
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~l~~~~~~~~~l~~L~~L~Ls~-------N~l~~~l~~ 392 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK--ELSKIAEMTTQMKSLQQLDISQ-------NSVSYDEKK 392 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCC--BHHHHHHHHTTCTTCCEEECCS-------SCCBCCGGG
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccC--ccccchHHHhhCCCCCEEECCC-------CcCCccccc
Confidence 45678888888887654 5667788999999999988741 1123556788999999999999 88877 777
Q ss_pred c-cccccccccceecCCCC-cccchhhhcCCCccEEEeccCCCCccccccccccccCCeeecccccccccccc-CCCCCC
Q 005860 568 G-IEKLIHLRYLRLVGLGT-EELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKG-IQRLTN 644 (673)
Q Consensus 568 ~-i~~L~~Lr~L~L~~~~i-~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~-i~~L~~ 644 (673)
. +..+++|++|+|++|.+ ..+|..+. ++|++|++++|. +..+|..+..+++|++|++++|.++.+|.. +..+++
T Consensus 393 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 469 (520)
T 2z7x_B 393 GDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTS 469 (520)
T ss_dssp CSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred chhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc-ccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCc
Confidence 5 78889999999999996 55666554 799999999986 889999999999999999999999999987 667776
Q ss_pred CCcCC
Q 005860 645 LRTLS 649 (673)
Q Consensus 645 L~~L~ 649 (673)
|++|.
T Consensus 470 L~~L~ 474 (520)
T 2z7x_B 470 LQKIW 474 (520)
T ss_dssp CCEEE
T ss_pred ccEEE
Confidence 66653
No 99
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.04 E-value=6.3e-11 Score=129.22 Aligned_cols=143 Identities=12% Similarity=0.095 Sum_probs=119.6
Q ss_pred CceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhh-hccccc
Q 005860 492 EKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNK-ILKGIE 570 (673)
Q Consensus 492 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~-lp~~i~ 570 (673)
.+++.+.+..+.....+.. .+++|++|.+.++.. ....+..|..+++|+.|++++ +.+.. .|..+.
T Consensus 99 ~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l----~~~~~~~~~~l~~L~~L~Ls~-------N~l~~~~~~~l~ 165 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS--RGQGKKNIYLANNKI----TMLRDLDEGCRSRVQYLDLKL-------NEIDTVNFAELA 165 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCC----CSGGGBCGGGGSSEEEEECTT-------SCCCEEEGGGGG
T ss_pred CCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCC----CCCCchhhcCCCCCCEEECCC-------CCCCCcChHHHh
Confidence 5688888888777655543 468899999999873 344566778899999999999 88776 456665
Q ss_pred -cccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccccccccCCCCCCCCcCC
Q 005860 571 -KLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKGIQRLTNLRTLS 649 (673)
Q Consensus 571 -~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~i~~L~~L~~L~ 649 (673)
.+++|++|+|++|.+..+|. ...+++|++|+|++|. +..+|..++.+++|++|++++|.+..+|..++.+++|+.|.
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~ 243 (487)
T 3oja_A 166 ASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFD 243 (487)
T ss_dssp GGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEE
T ss_pred hhCCcccEEecCCCccccccc-cccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEE
Confidence 79999999999999999876 4469999999999976 99999999999999999999999999999888887777664
No 100
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.04 E-value=1.4e-10 Score=125.91 Aligned_cols=34 Identities=12% Similarity=0.125 Sum_probs=15.8
Q ss_pred CceEEEEEEcCCCCccccccccccccchhhhccch
Q 005860 492 EKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTL 526 (673)
Q Consensus 492 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~ 526 (673)
.+++.+.+..+.....++ +..+++|++|.+.++.
T Consensus 68 ~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~ 101 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ 101 (466)
T ss_dssp TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred cCCCEEECCCCccCCchh-hhccccCCEEECCCCc
Confidence 344555554444433333 4444555555554443
No 101
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.04 E-value=8.3e-11 Score=109.63 Aligned_cols=129 Identities=20% Similarity=0.150 Sum_probs=108.6
Q ss_pred cCceEEEEEEcCCCCcccccccccc-ccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhcccc
Q 005860 491 QEKLRHSMLVLGYEASFPISIFKAK-NLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGI 569 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i 569 (673)
..+++.+.+..+....++ .+..+. +|++|++.++... . + ..|..+++|+.|++++ +.+..+|+.+
T Consensus 18 ~~~L~~L~l~~n~l~~i~-~~~~~~~~L~~L~Ls~N~l~----~-~-~~l~~l~~L~~L~Ls~-------N~l~~~~~~~ 83 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIR----K-L-DGFPLLRRLKTLLVNN-------NRICRIGEGL 83 (176)
T ss_dssp TTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCC----E-E-CCCCCCSSCCEEECCS-------SCCCEECSCH
T ss_pred cCCceEEEeeCCCCchhH-HhhhcCCCCCEEECCCCCCC----c-c-cccccCCCCCEEECCC-------CcccccCcch
Confidence 457888988888776664 344544 9999999998742 2 2 4578899999999999 9999988776
Q ss_pred -ccccccccceecCCCCcccch--hhhcCCCccEEEeccCCCCcccccc----ccccccCCeeecccccccc
Q 005860 570 -EKLIHLRYLRLVGLGTEELPE--TCCELLNLQVLEIEQCTSLKRLPLG----IGKLVNLRHLTYDDSCLEF 634 (673)
Q Consensus 570 -~~L~~Lr~L~L~~~~i~~LP~--~i~~L~~L~~L~l~~c~~l~~lP~~----i~~L~~Lr~L~l~~~~l~~ 634 (673)
+.+++|++|+|++|.+..+|. .++.+++|++|++++|+ +..+|.. ++.+++|++|+++.+....
T Consensus 84 ~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 84 DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred hhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 899999999999999999997 89999999999999987 8899985 8999999999988876543
No 102
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.03 E-value=2.4e-10 Score=126.92 Aligned_cols=87 Identities=22% Similarity=0.291 Sum_probs=44.6
Q ss_pred HhhhCCccceeeeccccccccccchhhhccccccccccccceecCCCCcccchhhhcCCCccEEEeccCCCCcccccccc
Q 005860 538 LFDQLKCLRALRIATLMNTWDVNSTNKILKGIEKLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIG 617 (673)
Q Consensus 538 ~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~ 617 (673)
.+..+++|+.|++++ +.+..+|..++.+.+|++|+|++|.+..+|..+. ++|++|++++|. +..+| +
T Consensus 382 ~~~~l~~L~~L~Ls~-------N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~--~~L~~L~Ls~N~-l~~~~---~ 448 (549)
T 2z81_A 382 ILLTLKNLTSLDISR-------NTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP--QTLEVLDVSNNN-LDSFS---L 448 (549)
T ss_dssp HGGGCTTCCEEECTT-------CCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSC--TTCSEEECCSSC-CSCCC---C
T ss_pred hhhcCCCCCEEECCC-------CCCccCChhhcccccccEEECCCCCcccccchhc--CCceEEECCCCC-hhhhc---c
Confidence 355566666666666 5555666666666666666666666655554332 223333333222 22221 2
Q ss_pred ccccCCeeeccccccccccc
Q 005860 618 KLVNLRHLTYDDSCLEFIPK 637 (673)
Q Consensus 618 ~L~~Lr~L~l~~~~l~~lP~ 637 (673)
.+++|++|++++|.++.+|.
T Consensus 449 ~l~~L~~L~Ls~N~l~~ip~ 468 (549)
T 2z81_A 449 FLPRLQELYISRNKLKTLPD 468 (549)
T ss_dssp CCTTCCEEECCSSCCSSCCC
T ss_pred cCChhcEEECCCCccCcCCC
Confidence 44555555555555555553
No 103
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.02 E-value=1.6e-10 Score=119.55 Aligned_cols=88 Identities=18% Similarity=0.218 Sum_probs=71.5
Q ss_pred Cccceeeeccccccccccchhhhc-cccccccccccceecCCCCcccch-hhhcCCCccEEEeccCCCCccccccccccc
Q 005860 543 KCLRALRIATLMNTWDVNSTNKIL-KGIEKLIHLRYLRLVGLGTEELPE-TCCELLNLQVLEIEQCTSLKRLPLGIGKLV 620 (673)
Q Consensus 543 ~~L~~L~L~~~~~~~~~~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~LP~-~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~ 620 (673)
+.|+.|++++ +.+..++ ..+..+++|++|+|++|.+..+|. .++.+++|++|++++|. +..+|..++.++
T Consensus 193 ~~L~~L~l~~-------n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~ 264 (332)
T 2ft3_A 193 ETLNELHLDH-------NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLK 264 (332)
T ss_dssp SSCSCCBCCS-------SCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCT
T ss_pred CCCCEEECCC-------CcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCc
Confidence 4667777777 6666654 578888899999999988887764 78889999999999876 888998899999
Q ss_pred cCCeeecccccccccccc
Q 005860 621 NLRHLTYDDSCLEFIPKG 638 (673)
Q Consensus 621 ~Lr~L~l~~~~l~~lP~~ 638 (673)
+|++|++++|.++.+|..
T Consensus 265 ~L~~L~l~~N~l~~~~~~ 282 (332)
T 2ft3_A 265 LLQVVYLHTNNITKVGVN 282 (332)
T ss_dssp TCCEEECCSSCCCBCCTT
T ss_pred cCCEEECCCCCCCccChh
Confidence 999999988888888754
No 104
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.02 E-value=1.6e-10 Score=127.49 Aligned_cols=125 Identities=18% Similarity=0.148 Sum_probs=59.2
Q ss_pred CceEEEEEEcCCCCccc-cccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccccc
Q 005860 492 EKLRHSMLVLGYEASFP-ISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIE 570 (673)
Q Consensus 492 ~~~r~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~ 570 (673)
.+++++.+..+.....+ ..+..+++|++|++.++.. ....|..|.++++|++|++++ +.+..+|..
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~-------N~l~~lp~~-- 87 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRI----QYLDISVFKFNQELEYLDLSH-------NKLVKISCH-- 87 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCC----CEEEGGGGTTCTTCCEEECCS-------SCCCEEECC--
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCcc----CCcChHHhhcccCCCEEecCC-------CceeecCcc--
Confidence 34555555544443333 2344455555555555431 222334445555555555555 554444444
Q ss_pred cccccccceecCCCCcc--cchhhhcCCCccEEEeccCCCCccccccccccccC--Ceeecccccc
Q 005860 571 KLIHLRYLRLVGLGTEE--LPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNL--RHLTYDDSCL 632 (673)
Q Consensus 571 ~L~~Lr~L~L~~~~i~~--LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L--r~L~l~~~~l 632 (673)
.+.+|++|+|++|.+.. +|..++++++|++|++++|. +.. ..++.+++| ++|++++|.+
T Consensus 88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeecccc
Confidence 45555555555555443 34455555555555555543 332 234444444 5555544443
No 105
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.02 E-value=2.8e-10 Score=127.99 Aligned_cols=131 Identities=18% Similarity=0.134 Sum_probs=68.0
Q ss_pred cCceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchh-hhcc-c
Q 005860 491 QEKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTN-KILK-G 568 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~-~lp~-~ 568 (673)
..+++.+.+..+....+|..+..+++|++|.+.++.. ....+..+..+++|+.|++++ +.+. .+|. .
T Consensus 277 l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~-------n~~~~~~~~~~ 345 (606)
T 3t6q_A 277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKF----ENLCQISASNFPSLTHLSIKG-------NTKRLELGTGC 345 (606)
T ss_dssp CTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCC----SBGGGGCGGGCTTCSEEECCS-------CSSCCBCCSST
T ss_pred ccCCCEEeccCCccCCCChhhcccccCCEEECccCCc----CcCchhhhhccCcCCEEECCC-------CCcccccchhh
Confidence 3466777777666666666666677777777776652 223344455566666666665 4432 2332 2
Q ss_pred cccccccccceecCCCCccc---chhhhcCCCccEEEeccCCCCcc-ccccccccccCCeeeccccccc
Q 005860 569 IEKLIHLRYLRLVGLGTEEL---PETCCELLNLQVLEIEQCTSLKR-LPLGIGKLVNLRHLTYDDSCLE 633 (673)
Q Consensus 569 i~~L~~Lr~L~L~~~~i~~L---P~~i~~L~~L~~L~l~~c~~l~~-lP~~i~~L~~Lr~L~l~~~~l~ 633 (673)
++.+++|++|++++|.+..+ |..++.+++|++|++++|. +.. .|..++++++|++|++++|.+.
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCC
Confidence 44455555555555544433 3344455555555555443 222 2334444444444444444443
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.02 E-value=1.3e-10 Score=121.62 Aligned_cols=139 Identities=19% Similarity=0.198 Sum_probs=109.0
Q ss_pred EEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhh-hCCccceeeeccccccccccchhhhcc-cccccc
Q 005860 496 HSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFD-QLKCLRALRIATLMNTWDVNSTNKILK-GIEKLI 573 (673)
Q Consensus 496 ~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~lp~-~i~~L~ 573 (673)
.+.+..+....+|..+ ...++.|+++++.+ ....+..|. ++++|+.|+|++ +.+..+++ .+..+.
T Consensus 22 ~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l----~~l~~~~~~~~l~~L~~L~L~~-------N~i~~i~~~~~~~l~ 88 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSL--PSYTALLDLSHNNL----SRLRAEWTPTRLTNLHSLLLSH-------NHLNFISSEAFVPVP 88 (361)
T ss_dssp EEECCSSCCSSCCSSC--CTTCSEEECCSSCC----CEECTTSSSSCCTTCCEEECCS-------SCCCEECTTTTTTCT
T ss_pred EEEeCCCCcCccCccC--CCCCCEEECCCCCC----CccChhhhhhcccccCEEECCC-------CcCCccChhhccCCC
Confidence 3444444455566544 34688999998863 344455566 899999999999 99888765 699999
Q ss_pred ccccceecCCCCcccch-hhhcCCCccEEEeccCCCCccc-cccccccccCCeeeccccccccccccC----CCCCCCCc
Q 005860 574 HLRYLRLVGLGTEELPE-TCCELLNLQVLEIEQCTSLKRL-PLGIGKLVNLRHLTYDDSCLEFIPKGI----QRLTNLRT 647 (673)
Q Consensus 574 ~Lr~L~L~~~~i~~LP~-~i~~L~~L~~L~l~~c~~l~~l-P~~i~~L~~Lr~L~l~~~~l~~lP~~i----~~L~~L~~ 647 (673)
+|++|+|++|.+..+|. .+..|++|++|+|++|. +..+ |..+.++++|++|++++|.+..+|..+ +.+++|+.
T Consensus 89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~ 167 (361)
T 2xot_A 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLML 167 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCE
T ss_pred CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCE
Confidence 99999999999999875 58899999999999977 7776 568999999999999999999999774 34555554
Q ss_pred C
Q 005860 648 L 648 (673)
Q Consensus 648 L 648 (673)
|
T Consensus 168 L 168 (361)
T 2xot_A 168 L 168 (361)
T ss_dssp E
T ss_pred E
Confidence 4
No 107
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.01 E-value=3.9e-10 Score=122.47 Aligned_cols=140 Identities=21% Similarity=0.243 Sum_probs=95.0
Q ss_pred cCceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccccc
Q 005860 491 QEKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIE 570 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~ 570 (673)
..+++.+.+..+..... +.+..+++|+.|.+.++.. ....+ +..++.|+.|++++ +.+..+|+ +.
T Consensus 220 l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l----~~~~~--~~~l~~L~~L~l~~-------n~l~~~~~-~~ 284 (466)
T 1o6v_A 220 LTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQI----SNLAP--LSGLTKLTELKLGA-------NQISNISP-LA 284 (466)
T ss_dssp CTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCC----CCCGG--GTTCTTCSEEECCS-------SCCCCCGG-GT
T ss_pred cCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCcc----ccchh--hhcCCCCCEEECCC-------CccCcccc-cc
Confidence 45566666666655443 2455667777777776653 11111 56777777777777 77666665 77
Q ss_pred cccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccccccccCCCCCCCCcCC
Q 005860 571 KLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKGIQRLTNLRTLS 649 (673)
Q Consensus 571 ~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~i~~L~~L~~L~ 649 (673)
.+++|++|+|++|.+..+|. ++.+++|++|++++|. +..+|. ++.+++|+.|++++|.+..+| .++++++|+.|.
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~ 359 (466)
T 1o6v_A 285 GLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLS 359 (466)
T ss_dssp TCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSC-CSCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEE
T ss_pred CCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCc-CCCchh-hccCccCCEeECCCCccCCch-hhccCCCCCEEe
Confidence 77888888888887777766 7778888888888775 666554 677888888888888777764 466666665553
No 108
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.00 E-value=1.8e-10 Score=124.42 Aligned_cols=135 Identities=19% Similarity=0.154 Sum_probs=105.2
Q ss_pred cCceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccccc
Q 005860 491 QEKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIE 570 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~ 570 (673)
..+++.+.+..+.....| .+..+++|++|.+.++... . ++ +..++.|++|++++ +.+..+| ++
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~----~-~~--~~~l~~L~~L~Ls~-------N~l~~~~--~~ 103 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNIT----T-LD--LSQNTNLTYLACDS-------NKLTNLD--VT 103 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCS----C-CC--CTTCTTCSEEECCS-------SCCSCCC--CT
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCC----e-Ec--cccCCCCCEEECcC-------CCCceee--cC
Confidence 467888888887776664 6778889999999888641 1 22 67888999999998 8877775 88
Q ss_pred cccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeecccc-ccccccccCCCCCCCCcCC
Q 005860 571 KLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDS-CLEFIPKGIQRLTNLRTLS 649 (673)
Q Consensus 571 ~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~-~l~~lP~~i~~L~~L~~L~ 649 (673)
.+++|++|+|++|.+..+| ++.+++|++|++++|. +..+| ++++++|++|+++.| .+..+ .++.+++|+.|.
T Consensus 104 ~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 176 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLD 176 (457)
T ss_dssp TCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEE
T ss_pred CCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEE
Confidence 8999999999999988886 8889999999999876 77775 788899999998877 44444 356666666653
No 109
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.99 E-value=3.3e-10 Score=132.38 Aligned_cols=148 Identities=18% Similarity=0.256 Sum_probs=117.6
Q ss_pred ccCceEEEEEEcCCCCcc-ccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhh-cc
Q 005860 490 YQEKLRHSMLVLGYEASF-PISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKI-LK 567 (673)
Q Consensus 490 ~~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l-p~ 567 (673)
.+.+++++.+..+..... +..+..+++|++|++.++.. .....+..|.++++|++|+|++ +.+..+ |.
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~---~~~i~~~~f~~L~~L~~L~Ls~-------N~l~~~~p~ 91 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT---PLTIDKEAFRNLPNLRILDLGS-------SKIYFLHPD 91 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC---CCEECTTTTSSCTTCCEEECTT-------CCCCEECTT
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC---ccccCHHHhcCCCCCCEEECCC-------CcCcccCHh
Confidence 567899999999887655 45678899999999998842 2233366789999999999999 887776 78
Q ss_pred ccccccccccceecCCCCcc-cchh--hhcCCCccEEEeccCCCCcccc--ccccccccCCeeeccccccccc-cccCCC
Q 005860 568 GIEKLIHLRYLRLVGLGTEE-LPET--CCELLNLQVLEIEQCTSLKRLP--LGIGKLVNLRHLTYDDSCLEFI-PKGIQR 641 (673)
Q Consensus 568 ~i~~L~~Lr~L~L~~~~i~~-LP~~--i~~L~~L~~L~l~~c~~l~~lP--~~i~~L~~Lr~L~l~~~~l~~l-P~~i~~ 641 (673)
.++.+.+|++|+|++|.+.. +|.. +++|++|++|+|++|. +..++ ..+++|++|++|++++|.+..+ |..++.
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 89999999999999999765 5665 8999999999999977 66553 5789999999999999887654 344555
Q ss_pred C--CCCCcC
Q 005860 642 L--TNLRTL 648 (673)
Q Consensus 642 L--~~L~~L 648 (673)
+ ++|+.|
T Consensus 171 l~~~~L~~L 179 (844)
T 3j0a_A 171 LQGKTLSFF 179 (844)
T ss_dssp HHHCSSCCC
T ss_pred ccCCccceE
Confidence 5 555554
No 110
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.99 E-value=4.4e-10 Score=122.48 Aligned_cols=168 Identities=18% Similarity=0.172 Sum_probs=88.9
Q ss_pred ceEEEEEEcCCCCcccc-ccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccc-hhhhccccc
Q 005860 493 KLRHSMLVLGYEASFPI-SIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNS-TNKILKGIE 570 (673)
Q Consensus 493 ~~r~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~lp~~i~ 570 (673)
+++.+.+..+....++. .+..+++|+.|.+.++.. ....+..|..+++|+.|++++ +. +..+|..+.
T Consensus 153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i----~~~~~~~~~~l~~L~~L~l~~-------~~~~~~~~~~~~ 221 (477)
T 2id5_A 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI----NAIRDYSFKRLYRLKVLEISH-------WPYLDTMTPNCL 221 (477)
T ss_dssp TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC----CEECTTCSCSCTTCCEEEEEC-------CTTCCEECTTTT
T ss_pred CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC----cEeChhhcccCcccceeeCCC-------CccccccCcccc
Confidence 34444444443333322 133344444444444331 112222344455555555554 33 334455555
Q ss_pred cccccccceecCCCCcccc-hhhhcCCCccEEEeccCCCCccccc-cccccccCCeeeccccccccc-cccCCCCCCCCc
Q 005860 571 KLIHLRYLRLVGLGTEELP-ETCCELLNLQVLEIEQCTSLKRLPL-GIGKLVNLRHLTYDDSCLEFI-PKGIQRLTNLRT 647 (673)
Q Consensus 571 ~L~~Lr~L~L~~~~i~~LP-~~i~~L~~L~~L~l~~c~~l~~lP~-~i~~L~~Lr~L~l~~~~l~~l-P~~i~~L~~L~~ 647 (673)
...+|++|+|++|.+..+| ..+..+++|++|+|++|. +..+|. .+.++++|+.|++++|.+..+ |..+..+++|+.
T Consensus 222 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 300 (477)
T 2id5_A 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRV 300 (477)
T ss_dssp TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCE
T ss_pred cCccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCE
Confidence 5556777777777777776 356777777777777765 655553 467777777777777777765 344666666665
Q ss_pred CCeeE--EccCCccCCCccccCCCCCC
Q 005860 648 LSEFV--VVRGGSKYGGKACNLEGLRY 672 (673)
Q Consensus 648 L~~~~--~~~~~~~~~~~~~~l~~L~~ 672 (673)
|..-. +.......+..+.+|+.|.+
T Consensus 301 L~L~~N~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 301 LNVSGNQLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp EECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred EECCCCcCceeCHhHcCCCcccCEEEc
Confidence 53221 11112223445566666654
No 111
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.98 E-value=4.4e-10 Score=121.59 Aligned_cols=98 Identities=15% Similarity=0.180 Sum_probs=58.7
Q ss_pred ccceeeeccccccccccchhh-hccccccccccccceecCCCCccc-chhhhcCCCccEEEeccCCCCccc-cccccccc
Q 005860 544 CLRALRIATLMNTWDVNSTNK-ILKGIEKLIHLRYLRLVGLGTEEL-PETCCELLNLQVLEIEQCTSLKRL-PLGIGKLV 620 (673)
Q Consensus 544 ~L~~L~L~~~~~~~~~~~~~~-lp~~i~~L~~Lr~L~L~~~~i~~L-P~~i~~L~~L~~L~l~~c~~l~~l-P~~i~~L~ 620 (673)
.|+.|++++ +.+.. .|..++.+++|++|+|++|.+..+ |..++.+++|++|++++|. +..+ |..+++++
T Consensus 276 ~L~~L~l~~-------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~ 347 (455)
T 3v47_A 276 GVKTCDLSK-------SKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLD 347 (455)
T ss_dssp CCCEEECCS-------SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGGTTCT
T ss_pred CceEEEecC-------ccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cCCcChhHhcCcc
Confidence 455555555 44433 344566666777777777766555 3466666777777777655 5544 44566667
Q ss_pred cCCeeeccccccccc-cccCCCCCCCCcCC
Q 005860 621 NLRHLTYDDSCLEFI-PKGIQRLTNLRTLS 649 (673)
Q Consensus 621 ~Lr~L~l~~~~l~~l-P~~i~~L~~L~~L~ 649 (673)
+|++|++++|.+..+ |..++.+++|++|.
T Consensus 348 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 377 (455)
T 3v47_A 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELA 377 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCEEECCCCcccccChhhccccccccEEE
Confidence 777777666666655 44455665555553
No 112
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.97 E-value=1.9e-11 Score=116.48 Aligned_cols=127 Identities=22% Similarity=0.211 Sum_probs=101.1
Q ss_pred ccccchhhhccchhhhh--hhhhHHHHhhhCCccceeeeccccccccccchhhhccccccccccccceecCCCCcccchh
Q 005860 514 AKNLRSLFINNTLIQVS--LTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIEKLIHLRYLRLVGLGTEELPET 591 (673)
Q Consensus 514 ~~~Lr~L~l~~~~~~~~--~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~ 591 (673)
...+..+.+..+..... ....++..+..+++|+.|++++ +.+..+| .+..+++|++|+|++|.+..+|..
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~-------n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~ 88 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALST-------NNIEKIS-SLSGMENLRILSLGRNLIKKIENL 88 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSE-------EEESCCC-CHHHHTTCCEEEEEEEEECSCSSH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCC-------CCCcccc-ccccCCCCCEEECCCCCcccccch
Confidence 34455555544432111 1122345788999999999999 8888888 899999999999999999999999
Q ss_pred hhcCCCccEEEeccCCCCccccccccccccCCeeeccccccccccc--cCCCCCCCCcCCe
Q 005860 592 CCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPK--GIQRLTNLRTLSE 650 (673)
Q Consensus 592 i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~--~i~~L~~L~~L~~ 650 (673)
++.+++|++|++++|. +..+| .++++++|++|++++|.+..+|. .++.+++|++|..
T Consensus 89 ~~~~~~L~~L~L~~N~-l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l 147 (198)
T 1ds9_A 89 DAVADTLEELWISYNQ-IASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL 147 (198)
T ss_dssp HHHHHHCSEEEEEEEE-CCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEE
T ss_pred hhcCCcCCEEECcCCc-CCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEe
Confidence 9999999999999986 88888 79999999999999999998774 5677777666543
No 113
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.97 E-value=9e-10 Score=104.18 Aligned_cols=120 Identities=18% Similarity=0.254 Sum_probs=86.0
Q ss_pred EEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhcc-cccccccccc
Q 005860 499 LVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILK-GIEKLIHLRY 577 (673)
Q Consensus 499 l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~-~i~~L~~Lr~ 577 (673)
+..+....+|..+ .++|++|.+.++.+ ..+|..|..+++|+.|+|++ +.+..+++ .+..|.+|++
T Consensus 17 ~~~~~l~~ip~~~--~~~l~~L~L~~n~i-----~~ip~~~~~l~~L~~L~Ls~-------N~i~~i~~~~f~~l~~L~~ 82 (193)
T 2wfh_A 17 CSNKGLKVLPKGI--PRDVTELYLDGNQF-----TLVPKELSNYKHLTLIDLSN-------NRISTLSNQSFSNMTQLLT 82 (193)
T ss_dssp CTTSCCSSCCSCC--CTTCCEEECCSSCC-----CSCCGGGGGCTTCCEEECCS-------SCCCCCCTTTTTTCTTCCE
T ss_pred cCCCCCCcCCCCC--CCCCCEEECCCCcC-----chhHHHhhcccCCCEEECCC-------CcCCEeCHhHccCCCCCCE
Confidence 3333444555443 25788888887764 13345677888888888888 77777654 5788888888
Q ss_pred ceecCCCCcccch-hhhcCCCccEEEeccCCCCcccccc-ccccccCCeeeccccccc
Q 005860 578 LRLVGLGTEELPE-TCCELLNLQVLEIEQCTSLKRLPLG-IGKLVNLRHLTYDDSCLE 633 (673)
Q Consensus 578 L~L~~~~i~~LP~-~i~~L~~L~~L~l~~c~~l~~lP~~-i~~L~~Lr~L~l~~~~l~ 633 (673)
|+|++|.+..+|+ .+..|++|++|+|+++. +..+|.. +..+++|++|++++|.+.
T Consensus 83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EECCCCccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 8888888877764 57888888888888865 7777764 677888888888776653
No 114
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.97 E-value=4.7e-10 Score=124.89 Aligned_cols=133 Identities=16% Similarity=0.180 Sum_probs=95.1
Q ss_pred EEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhh-cccccccc
Q 005860 495 RHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKI-LKGIEKLI 573 (673)
Q Consensus 495 r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l-p~~i~~L~ 573 (673)
+++.+..+....+|..+. ++|++|++.++.. ....+..|.++++|++|++++ +.+..+ |..++.++
T Consensus 34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i----~~~~~~~~~~l~~L~~L~Ls~-------N~l~~~~~~~~~~l~ 100 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNSI----SELRMPDISFLSELRVLRLSH-------NRIRSLDFHVFLFNQ 100 (562)
T ss_dssp CEEECTTSCCCSCCTTSC--TTCCEEECCSSCC----CCCCGGGTTTCTTCCEEECCS-------CCCCEECTTTTTTCT
T ss_pred cEEEcCCCCCccCCCCCC--CCcCEEECCCCCc----cccChhhhccCCCccEEECCC-------CCCCcCCHHHhCCCC
Confidence 556666665555665443 6788888887763 344455677888888888888 777666 55678888
Q ss_pred ccccceecCCCCcccchhhhcCCCccEEEeccCCCCcccc--ccccccccCCeeeccccccccccccCCCCCCC
Q 005860 574 HLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLP--LGIGKLVNLRHLTYDDSCLEFIPKGIQRLTNL 645 (673)
Q Consensus 574 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP--~~i~~L~~Lr~L~l~~~~l~~lP~~i~~L~~L 645 (673)
+|++|+|++|.+..+|.. .+++|++|++++|. +..+| ..++++++|++|++++|.+.. ..++.+++|
T Consensus 101 ~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L 169 (562)
T 3a79_B 101 DLEYLDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHL 169 (562)
T ss_dssp TCCEEECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTS
T ss_pred CCCEEECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc--Cchhhhhhc
Confidence 888888888888888876 78888888888866 66654 678888888888888777664 245555555
No 115
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.96 E-value=5.4e-10 Score=120.75 Aligned_cols=134 Identities=16% Similarity=0.155 Sum_probs=90.5
Q ss_pred cCceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccccc
Q 005860 491 QEKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIE 570 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~ 570 (673)
..+++.+.+..+....++ +..+++|++|.+.++... . ++ +..++.|++|++++ +.+..+| ++
T Consensus 63 l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~----~-~~--~~~l~~L~~L~L~~-------N~l~~l~--~~ 124 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLT----N-LD--VTPLTKLTYLNCDT-------NKLTKLD--VS 124 (457)
T ss_dssp CTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS----C-CC--CTTCTTCCEEECCS-------SCCSCCC--CT
T ss_pred cCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCc----e-ee--cCCCCcCCEEECCC-------CcCCeec--CC
Confidence 456777777777665553 667788888888777641 1 12 56777888888887 7766664 77
Q ss_pred cccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccccccccCCCCCCCCcC
Q 005860 571 KLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKGIQRLTNLRTL 648 (673)
Q Consensus 571 ~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~i~~L~~L~~L 648 (673)
.+++|++|++++|.+..+| ++.+++|++|++++|..+..+ .++.+++|++|++++|.++.+| ++.+++|+.|
T Consensus 125 ~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L 196 (457)
T 3bz5_A 125 QNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRL 196 (457)
T ss_dssp TCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEE
T ss_pred CCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEE
Confidence 7778888888877777765 667777777777776555555 3566677777777666666665 4444444443
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.96 E-value=3.9e-10 Score=106.64 Aligned_cols=124 Identities=19% Similarity=0.208 Sum_probs=92.4
Q ss_pred EEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHH-HHhhhCCccceeeeccccccccccchhhh-cccccccc
Q 005860 496 HSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQ-SLFDQLKCLRALRIATLMNTWDVNSTNKI-LKGIEKLI 573 (673)
Q Consensus 496 ~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~~l-p~~i~~L~ 573 (673)
.+.+..+....+|..+. .+|++|.+.++.+ ....+ ..|..+++|+.|+|++ +.+..+ |..+..+.
T Consensus 12 ~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i----~~~~~~~~~~~l~~L~~L~Ls~-------N~l~~~~~~~~~~l~ 78 (192)
T 1w8a_A 12 TVDCTGRGLKEIPRDIP--LHTTELLLNDNEL----GRISSDGLFGRLPHLVKLELKR-------NQLTGIEPNAFEGAS 78 (192)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSCCC----CSBCCSCSGGGCTTCCEEECCS-------SCCCCBCTTTTTTCT
T ss_pred EEEcCCCCcCcCccCCC--CCCCEEECCCCcC----CccCCccccccCCCCCEEECCC-------CCCCCcCHhHcCCcc
Confidence 45555555556665443 3788888888763 22222 2477888899999988 887776 66788889
Q ss_pred ccccceecCCCCcccchh-hhcCCCccEEEeccCCCCccc-cccccccccCCeeeccccccc
Q 005860 574 HLRYLRLVGLGTEELPET-CCELLNLQVLEIEQCTSLKRL-PLGIGKLVNLRHLTYDDSCLE 633 (673)
Q Consensus 574 ~Lr~L~L~~~~i~~LP~~-i~~L~~L~~L~l~~c~~l~~l-P~~i~~L~~Lr~L~l~~~~l~ 633 (673)
+|++|+|++|.+..+|.. +..+++|++|+|+++. +..+ |..++.+++|++|++++|.+.
T Consensus 79 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999999999888887654 7888999999998876 6554 677888889999998888765
No 117
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.96 E-value=2.4e-10 Score=128.53 Aligned_cols=146 Identities=11% Similarity=0.118 Sum_probs=117.7
Q ss_pred ccCceEEEEEEcCCCCcc-ccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhh-cc
Q 005860 490 YQEKLRHSMLVLGYEASF-PISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKI-LK 567 (673)
Q Consensus 490 ~~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l-p~ 567 (673)
.+..++++.+..+..... +..+..+++|++|++.++.. ....|..|.++++|++|++++ +.+..+ |.
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~Ls~-------n~l~~~~~~ 99 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI----YWIHEDTFQSQHRLDTLVLTA-------NPLIFMAET 99 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCC----CEECTTTTTTCTTCCEEECTT-------CCCSEECTT
T ss_pred CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCcc----ceeChhhccCccccCeeeCCC-------CcccccChh
Confidence 456789999998887666 44677899999999998863 345567788999999999999 887665 66
Q ss_pred ccccccccccceecCCCCccc-chhhhcCCCccEEEeccCCCCcccc-ccccccccCCeeecccccccccc-ccCCCCCC
Q 005860 568 GIEKLIHLRYLRLVGLGTEEL-PETCCELLNLQVLEIEQCTSLKRLP-LGIGKLVNLRHLTYDDSCLEFIP-KGIQRLTN 644 (673)
Q Consensus 568 ~i~~L~~Lr~L~L~~~~i~~L-P~~i~~L~~L~~L~l~~c~~l~~lP-~~i~~L~~Lr~L~l~~~~l~~lP-~~i~~L~~ 644 (673)
.++.+++|++|+|++|.+..+ |..++++++|++|++++|. +..++ ..+..+++|++|++++|.+..++ ..++.+++
T Consensus 100 ~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 178 (606)
T 3t6q_A 100 ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178 (606)
T ss_dssp TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTT
T ss_pred hhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhcc
Confidence 899999999999999998887 6788999999999999976 77653 34445899999999999888774 44777777
Q ss_pred CCc
Q 005860 645 LRT 647 (673)
Q Consensus 645 L~~ 647 (673)
|+.
T Consensus 179 L~~ 181 (606)
T 3t6q_A 179 ATN 181 (606)
T ss_dssp CCS
T ss_pred cce
Confidence 773
No 118
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.96 E-value=2.3e-10 Score=133.68 Aligned_cols=136 Identities=19% Similarity=0.219 Sum_probs=110.4
Q ss_pred cCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccc-hhhh-ccccccccccccc
Q 005860 501 LGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNS-TNKI-LKGIEKLIHLRYL 578 (673)
Q Consensus 501 ~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l-p~~i~~L~~Lr~L 578 (673)
.+....+|. -.++|++|+++++.. ....+..|.++++|++|+|++ +. +..+ |..++++++|++|
T Consensus 13 ~~~L~~vP~---lp~~l~~LdLs~N~i----~~i~~~~~~~l~~L~~LdLs~-------n~~~~~i~~~~f~~L~~L~~L 78 (844)
T 3j0a_A 13 FCNLTQVPQ---VLNTTERLLLSFNYI----RTVTASSFPFLEQLQLLELGS-------QYTPLTIDKEAFRNLPNLRIL 78 (844)
T ss_dssp CCCSSCCCS---SCTTCCEEEEESCCC----CEECSSSCSSCCSCSEEEECT-------TCCCCEECTTTTSSCTTCCEE
T ss_pred CCCCCCCCC---CCCCcCEEECCCCcC----CccChhHCcccccCeEEeCCC-------CCCccccCHHHhcCCCCCCEE
Confidence 334455554 457899999998873 344566789999999999999 74 5556 7789999999999
Q ss_pred eecCCCCccc-chhhhcCCCccEEEeccCCCCcccccc--ccccccCCeeecccccccccc--ccCCCCCCCCcCCe
Q 005860 579 RLVGLGTEEL-PETCCELLNLQVLEIEQCTSLKRLPLG--IGKLVNLRHLTYDDSCLEFIP--KGIQRLTNLRTLSE 650 (673)
Q Consensus 579 ~L~~~~i~~L-P~~i~~L~~L~~L~l~~c~~l~~lP~~--i~~L~~Lr~L~l~~~~l~~lP--~~i~~L~~L~~L~~ 650 (673)
+|++|.+..+ |..+++|++|++|+|++|.....+|.. +++|++|++|++++|.+..++ ..++++++|++|..
T Consensus 79 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~L 155 (844)
T 3j0a_A 79 DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155 (844)
T ss_dssp ECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEE
T ss_pred ECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEEC
Confidence 9999998877 889999999999999998733346665 899999999999999988764 45888888888754
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.96 E-value=6.3e-10 Score=105.26 Aligned_cols=98 Identities=20% Similarity=0.324 Sum_probs=78.3
Q ss_pred CccceeeeccccccccccchhhhccccccccccccceecCCCCcccc-hhhhcCCCccEEEeccCCCCccccc-cccccc
Q 005860 543 KCLRALRIATLMNTWDVNSTNKILKGIEKLIHLRYLRLVGLGTEELP-ETCCELLNLQVLEIEQCTSLKRLPL-GIGKLV 620 (673)
Q Consensus 543 ~~L~~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP-~~i~~L~~L~~L~l~~c~~l~~lP~-~i~~L~ 620 (673)
+.|+.|++++ +.+..+|..+..+.+|++|+|++|.+..+| ..+..|++|++|+|+++. +..+|. .++.++
T Consensus 31 ~~l~~L~L~~-------n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~ 102 (193)
T 2wfh_A 31 RDVTELYLDG-------NQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLK 102 (193)
T ss_dssp TTCCEEECCS-------SCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCT
T ss_pred CCCCEEECCC-------CcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCC
Confidence 4788888888 888888888888888888888888888876 458888888888888866 777764 588888
Q ss_pred cCCeeecccccccccccc-CCCCCCCCcC
Q 005860 621 NLRHLTYDDSCLEFIPKG-IQRLTNLRTL 648 (673)
Q Consensus 621 ~Lr~L~l~~~~l~~lP~~-i~~L~~L~~L 648 (673)
+|++|++++|.+..+|.+ +..+++|+.|
T Consensus 103 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 131 (193)
T 2wfh_A 103 SLRLLSLHGNDISVVPEGAFNDLSALSHL 131 (193)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCEEECCCCCCCeeChhhhhcCccccEE
Confidence 888888888888888865 5666666655
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.95 E-value=4e-10 Score=106.57 Aligned_cols=75 Identities=20% Similarity=0.233 Sum_probs=34.2
Q ss_pred cchhhhccc--cccccccccceecCCCCccc-chhhhcCCCccEEEeccCCCCccccc-cccccccCCeeeccccccccc
Q 005860 560 NSTNKILKG--IEKLIHLRYLRLVGLGTEEL-PETCCELLNLQVLEIEQCTSLKRLPL-GIGKLVNLRHLTYDDSCLEFI 635 (673)
Q Consensus 560 ~~~~~lp~~--i~~L~~Lr~L~L~~~~i~~L-P~~i~~L~~L~~L~l~~c~~l~~lP~-~i~~L~~Lr~L~l~~~~l~~l 635 (673)
+.+..+++. ++.+++|++|+|++|.+..+ |..+..+++|++|+|+++. +..+|. .++.+++|++|++++|.++.+
T Consensus 39 n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 117 (192)
T 1w8a_A 39 NELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCV 117 (192)
T ss_dssp CCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred CcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCee
Confidence 444444332 44444555555554444444 3444444555555554433 443332 244444555555444444433
No 121
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.95 E-value=7.7e-10 Score=119.66 Aligned_cols=142 Identities=15% Similarity=0.169 Sum_probs=114.4
Q ss_pred ccCceEEEEEEcCCCCcc-ccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhh-cc
Q 005860 490 YQEKLRHSMLVLGYEASF-PISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKI-LK 567 (673)
Q Consensus 490 ~~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l-p~ 567 (673)
.+.+++++.+..+..... +..+..+++|++|.+.++.. .....+..|.++++|++|++++ +.+..+ |.
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~---~~~i~~~~~~~l~~L~~L~Ls~-------n~l~~~~~~ 97 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP---GLVIRNNTFRGLSSLIILKLDY-------NQFLQLETG 97 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCST---TCEECTTTTTTCTTCCEEECTT-------CTTCEECTT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcc---cceECcccccccccCCEEeCCC-------CccCccChh
Confidence 457899999998887665 55678899999999998863 1123356688999999999999 887765 77
Q ss_pred ccccccccccceecCCCCcc-cchh--hhcCCCccEEEeccCCCCccc-ccc-ccccccCCeeecccccccccc-ccCCC
Q 005860 568 GIEKLIHLRYLRLVGLGTEE-LPET--CCELLNLQVLEIEQCTSLKRL-PLG-IGKLVNLRHLTYDDSCLEFIP-KGIQR 641 (673)
Q Consensus 568 ~i~~L~~Lr~L~L~~~~i~~-LP~~--i~~L~~L~~L~l~~c~~l~~l-P~~-i~~L~~Lr~L~l~~~~l~~lP-~~i~~ 641 (673)
.++.+++|++|+|++|.+.. .|.. ++++++|++|++++|. +..+ |.. ++++++|++|++++|.+..++ ..++.
T Consensus 98 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 176 (455)
T 3v47_A 98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN 176 (455)
T ss_dssp TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGG
T ss_pred hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhc
Confidence 89999999999999999775 4555 8999999999999987 6666 655 899999999999999887664 33444
Q ss_pred C
Q 005860 642 L 642 (673)
Q Consensus 642 L 642 (673)
+
T Consensus 177 l 177 (455)
T 3v47_A 177 F 177 (455)
T ss_dssp G
T ss_pred c
Confidence 4
No 122
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.95 E-value=5.4e-09 Score=110.46 Aligned_cols=169 Identities=14% Similarity=0.085 Sum_probs=113.6
Q ss_pred CCcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccC-CeEEEEEcCCcccHHHHHH
Q 005860 168 VSEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYF-DKRMWVCVSDPFDELRIAK 246 (673)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~ 246 (673)
++.++||+.+++++..++....... ....+.+.|+|++|+||||||+.+++. ..... ...+|+.++...+...+..
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~-~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~ 92 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNP-GHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIG 92 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHST-TSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCC-CCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHH
Confidence 3689999999999999886521000 122348999999999999999999985 22221 2467888888778889999
Q ss_pred HHHHHhhCCCCC-cCcHHHHHHHHHHHhC--CCeEEEEEcCCCCCCccchhhhhhhccCCC----CCeEEEEEcCChhHH
Q 005860 247 AIIEALEGFVPT-VGELNSLLESIRASLV--GKKFLLILDDMWTDDYSKWEPFHYCLKNGV----RGSKILVTTRKETVA 319 (673)
Q Consensus 247 ~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~----~gs~iivTtr~~~v~ 319 (673)
.++..++...+. ......+...+...+. +++.+||||++..-+......+...+.... .+..||+||++....
T Consensus 93 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 93 EIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred HHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 999988764332 2244555556655553 678999999996554444555554443311 467788888876543
Q ss_pred Hhccc-------cceeecCCCCccccc
Q 005860 320 RMMES-------IHVISIKELSEQECW 339 (673)
Q Consensus 320 ~~~~~-------~~~~~l~~L~~~~~~ 339 (673)
..+.. ...+.+++++.++..
T Consensus 173 ~~l~~~~~~r~~~~~i~~~pl~~~~~~ 199 (389)
T 1fnn_A 173 NNLDPSTRGIMGKYVIRFSPYTKDQIF 199 (389)
T ss_dssp HTSCHHHHHHHTTCEEECCCCBHHHHH
T ss_pred HHhCHHhhhcCCCceEEeCCCCHHHHH
Confidence 33221 236889999887654
No 123
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.94 E-value=6.1e-10 Score=124.19 Aligned_cols=126 Identities=21% Similarity=0.209 Sum_probs=80.4
Q ss_pred hhhCCccceeeeccccccccccchhhhc--cccccccccccceecCCCCcc-cchhhhcCCCccEEEeccCCCCc--ccc
Q 005860 539 FDQLKCLRALRIATLMNTWDVNSTNKIL--KGIEKLIHLRYLRLVGLGTEE-LPETCCELLNLQVLEIEQCTSLK--RLP 613 (673)
Q Consensus 539 ~~~l~~L~~L~L~~~~~~~~~~~~~~lp--~~i~~L~~Lr~L~L~~~~i~~-LP~~i~~L~~L~~L~l~~c~~l~--~lP 613 (673)
+..+++|+.|++++ +.+...+ ..+..+++|++|++++|.+.. .|..++.+++|++|++++|. +. .+|
T Consensus 392 ~~~l~~L~~L~l~~-------n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~p 463 (570)
T 2z63_A 392 FLGLEQLEHLDFQH-------SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLP 463 (570)
T ss_dssp EETCTTCCEEECTT-------SEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEEC
T ss_pred ccccCCCCEEEccC-------CccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCc-Cccccch
Confidence 44555666666665 5554433 256677777777777777544 45667778888888888776 43 577
Q ss_pred ccccccccCCeeeccccccccc-cccCCCCCCCCcCCeeEE--ccCCccCCCccccCCCCCC
Q 005860 614 LGIGKLVNLRHLTYDDSCLEFI-PKGIQRLTNLRTLSEFVV--VRGGSKYGGKACNLEGLRY 672 (673)
Q Consensus 614 ~~i~~L~~Lr~L~l~~~~l~~l-P~~i~~L~~L~~L~~~~~--~~~~~~~~~~~~~l~~L~~ 672 (673)
..++.+++|+.|++++|.+..+ |..++++++|+.|..-.. ....+..+..+.+|+.|.+
T Consensus 464 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 525 (570)
T 2z63_A 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525 (570)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred hhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEe
Confidence 7788888888888888877776 556777777776643221 2222223455666666554
No 124
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.93 E-value=1.5e-09 Score=120.92 Aligned_cols=148 Identities=16% Similarity=0.171 Sum_probs=116.7
Q ss_pred ccCceEEEEEEcCCCCc-cccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhh-hcc
Q 005860 490 YQEKLRHSMLVLGYEAS-FPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNK-ILK 567 (673)
Q Consensus 490 ~~~~~r~l~l~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~-lp~ 567 (673)
...+++++.+..+.... .+..+..+++|+.|.+.++... .....+..|..+++|+.|++++ +.+.. +|.
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~~~l~~L~~L~l~~-------N~l~~~~~~ 421 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK--NFFKVALMTKNMSSLETLDVSL-------NSLNSHAYD 421 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCC--BTTHHHHTTTTCTTCCEEECTT-------SCCBSCCSS
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcC--CcccchhhhcCCCCCCEEECCC-------CcCCCccCh
Confidence 35678888888877654 4566778899999999988641 1113456678899999999999 88776 776
Q ss_pred c-cccccccccceecCCCC-cccchhhhcCCCccEEEeccCCCCccccccccccccCCeeecccccccccccc-CCCCCC
Q 005860 568 G-IEKLIHLRYLRLVGLGT-EELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKG-IQRLTN 644 (673)
Q Consensus 568 ~-i~~L~~Lr~L~L~~~~i-~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~-i~~L~~ 644 (673)
. +..+.+|++|+|++|.+ ...|..+. ++|++|++++|. +..+|..+..+++|++|++++|.++.+|.. ++.+++
T Consensus 422 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 498 (562)
T 3a79_B 422 RTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTS 498 (562)
T ss_dssp CCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTT
T ss_pred hhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCC
Confidence 4 77889999999999986 44555443 689999999975 899999888999999999999999999987 777777
Q ss_pred CCcCC
Q 005860 645 LRTLS 649 (673)
Q Consensus 645 L~~L~ 649 (673)
|+.|.
T Consensus 499 L~~L~ 503 (562)
T 3a79_B 499 LQYIW 503 (562)
T ss_dssp CCCEE
T ss_pred CCEEE
Confidence 77653
No 125
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.93 E-value=1.1e-09 Score=115.65 Aligned_cols=167 Identities=16% Similarity=0.183 Sum_probs=106.8
Q ss_pred CCcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccC---CeEEEEEcCCcccHHHH
Q 005860 168 VSEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYF---DKRMWVCVSDPFDELRI 244 (673)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~~ 244 (673)
++.++||+.+++.+.+++..... ......+.|+|++|+||||||+.+++. ....+ ...+|+.+....+...+
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~---~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~ 93 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR---EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRV 93 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG---TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc---CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHH
Confidence 46899999999999998864210 123568999999999999999999985 33332 24677877666677778
Q ss_pred HHHHHHHhhCCCCC-cCcHHHHHHHHHHHhC--CCeEEEEEcCCCCCC----ccchhhhhhhccC-CCCCeEEEEEcCCh
Q 005860 245 AKAIIEALEGFVPT-VGELNSLLESIRASLV--GKKFLLILDDMWTDD----YSKWEPFHYCLKN-GVRGSKILVTTRKE 316 (673)
Q Consensus 245 ~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~kr~LlVLDdvw~~~----~~~~~~l~~~l~~-~~~gs~iivTtr~~ 316 (673)
+..++..++..... ..+..+....+.+.+. +++.+||||+++.-. ...+..+...+.. ...+..+|+||+..
T Consensus 94 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 88888777554322 2234555556665554 458999999995421 1223333333322 23455678888765
Q ss_pred hHHHhccc-------cceeecCCCCccccc
Q 005860 317 TVARMMES-------IHVISIKELSEQECW 339 (673)
Q Consensus 317 ~v~~~~~~-------~~~~~l~~L~~~~~~ 339 (673)
.....+.. ...+++++++.++..
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~ 203 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELE 203 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHH
Confidence 43222211 147889999887754
No 126
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.92 E-value=8.3e-10 Score=125.92 Aligned_cols=133 Identities=20% Similarity=0.201 Sum_probs=109.6
Q ss_pred CCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhh-ccccccccccccceec
Q 005860 503 YEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKI-LKGIEKLIHLRYLRLV 581 (673)
Q Consensus 503 ~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l-p~~i~~L~~Lr~L~L~ 581 (673)
....+|..+. +++++|.+.++.. ....+..|.++++|++|++++ +.+..+ |..++.+++|++|+|+
T Consensus 15 ~L~~ip~~~~--~~l~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~-------n~l~~~~~~~~~~l~~L~~L~L~ 81 (680)
T 1ziw_A 15 KLTQVPDDLP--TNITVLNLTHNQL----RRLPAANFTRYSQLTSLDVGF-------NTISKLEPELCQKLPMLKVLNLQ 81 (680)
T ss_dssp CCSSCCSCSC--TTCSEEECCSSCC----CCCCGGGGGGGTTCSEEECCS-------SCCCCCCTTHHHHCTTCCEEECC
T ss_pred CccccccccC--CCCcEEECCCCCC----CCcCHHHHhCCCcCcEEECCC-------CccCccCHHHHhcccCcCEEECC
Confidence 3445555443 7899999998863 344556789999999999999 887765 5678999999999999
Q ss_pred CCCCcccch-hhhcCCCccEEEeccCCCCcccc-ccccccccCCeeecccccccccc-ccCCCCCCCCcCC
Q 005860 582 GLGTEELPE-TCCELLNLQVLEIEQCTSLKRLP-LGIGKLVNLRHLTYDDSCLEFIP-KGIQRLTNLRTLS 649 (673)
Q Consensus 582 ~~~i~~LP~-~i~~L~~L~~L~l~~c~~l~~lP-~~i~~L~~Lr~L~l~~~~l~~lP-~~i~~L~~L~~L~ 649 (673)
+|.+..+|+ .++++++|++|++++|. +..+| ..++++++|++|++++|.+..+| ..++++++|++|.
T Consensus 82 ~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 151 (680)
T 1ziw_A 82 HNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL 151 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEE
T ss_pred CCccCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEE
Confidence 999999997 69999999999999987 77777 57999999999999999888765 4477788887764
No 127
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.92 E-value=1.3e-09 Score=121.54 Aligned_cols=130 Identities=23% Similarity=0.220 Sum_probs=92.4
Q ss_pred cCceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccccc
Q 005860 491 QEKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIE 570 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~ 570 (673)
..+++.+.+..+....+|. .+++|++|++++|.+ . .+|. .+++|+.|++++ |.+..+|.
T Consensus 60 ~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l----~-~lp~---~l~~L~~L~Ls~-------N~l~~l~~--- 118 (622)
T 3g06_A 60 PAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQL----T-SLPV---LPPGLLELSIFS-------NPLTHLPA--- 118 (622)
T ss_dssp CTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCC----S-CCCC---CCTTCCEEEECS-------CCCCCCCC---
T ss_pred CCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcC----C-cCCC---CCCCCCEEECcC-------CcCCCCCC---
Confidence 3678888888887776665 568899999888864 1 1222 678899999988 88887777
Q ss_pred cccccccceecCCCCcccchhhhcCCCccEEEeccCCCCcccccccccc-----------------ccCCeeeccccccc
Q 005860 571 KLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKL-----------------VNLRHLTYDDSCLE 633 (673)
Q Consensus 571 ~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L-----------------~~Lr~L~l~~~~l~ 633 (673)
.+.+|++|+|++|.+..+|.. +++|++|++++|. +..+|..+.+| ++|++|++++|.++
T Consensus 119 ~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~ 194 (622)
T 3g06_A 119 LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA 194 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCC
Confidence 567788888888888888874 4788888888875 76666543322 56666777777776
Q ss_pred cccccCCCCCCC
Q 005860 634 FIPKGIQRLTNL 645 (673)
Q Consensus 634 ~lP~~i~~L~~L 645 (673)
.+|..+.+|+.|
T Consensus 195 ~l~~~~~~L~~L 206 (622)
T 3g06_A 195 SLPTLPSELYKL 206 (622)
T ss_dssp CCCCCCTTCCEE
T ss_pred CCCCccchhhEE
Confidence 666554444333
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.92 E-value=9.6e-10 Score=102.43 Aligned_cols=125 Identities=22% Similarity=0.294 Sum_probs=91.6
Q ss_pred EEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccc-cccccccc
Q 005860 498 MLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKG-IEKLIHLR 576 (673)
Q Consensus 498 ~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~-i~~L~~Lr 576 (673)
.+..+....+|..+ .++|++|.+.++.. ....+..|..+++|++|++++ +.+..+|+. +..+.+|+
T Consensus 13 ~~~~~~l~~~p~~~--~~~l~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~-------n~l~~~~~~~~~~l~~L~ 79 (177)
T 2o6r_A 13 RCNSKGLTSVPTGI--PSSATRLELESNKL----QSLPHGVFDKLTQLTKLSLSQ-------NQIQSLPDGVFDKLTKLT 79 (177)
T ss_dssp ECCSSCCSSCCTTC--CTTCSEEECCSSCC----CCCCTTTTTTCTTCSEEECCS-------SCCCCCCTTTTTTCTTCC
T ss_pred EecCCCCccCCCCC--CCCCcEEEeCCCcc----cEeCHHHhcCcccccEEECCC-------CcceEeChhHccCCCccC
Confidence 33333334444333 36788888887763 234455677888899999988 888777665 58888999
Q ss_pred cceecCCCCcccchh-hhcCCCccEEEeccCCCCcccccc-ccccccCCeeecccccccccc
Q 005860 577 YLRLVGLGTEELPET-CCELLNLQVLEIEQCTSLKRLPLG-IGKLVNLRHLTYDDSCLEFIP 636 (673)
Q Consensus 577 ~L~L~~~~i~~LP~~-i~~L~~L~~L~l~~c~~l~~lP~~-i~~L~~Lr~L~l~~~~l~~lP 636 (673)
+|+|++|.+..+|.. +..+++|++|+++++. +..+|.. +..+++|++|++++|.+...+
T Consensus 80 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 80 ILYLHENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred EEECCCCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 999999888888765 5788899999998875 8888876 477889999998888765433
No 129
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.91 E-value=3.8e-09 Score=103.52 Aligned_cols=158 Identities=11% Similarity=0.104 Sum_probs=89.8
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAI 248 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (673)
.+++||+..++.+..++.... ....+.|+|++|+||||||+.+++.......+.. .......+. ..+
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~ 89 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR------IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVCDNC----REI 89 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC------CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS---SCCSCSHHH----HHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---CCCcccHHH----HHH
Confidence 469999999999999986543 1347899999999999999999874221111100 000000000 000
Q ss_pred HHHhh-----CCCCCcCcHHHHHHHHHHH----hCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCChhH-
Q 005860 249 IEALE-----GFVPTVGELNSLLESIRAS----LVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKETV- 318 (673)
Q Consensus 249 ~~~l~-----~~~~~~~~~~~~~~~l~~~----l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v- 318 (673)
..... .........+.....+... ..+++.+||+||++.-+...++.+...+.....+..+|+||+....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 90 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp HTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred hccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 00000 0000001111111111111 2356899999999665555677777777666667889998876431
Q ss_pred HH-hccccceeecCCCCccccc
Q 005860 319 AR-MMESIHVISIKELSEQECW 339 (673)
Q Consensus 319 ~~-~~~~~~~~~l~~L~~~~~~ 339 (673)
.. .......+++++++.++..
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~ 191 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIR 191 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHH
Confidence 11 1122467889999987754
No 130
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.89 E-value=2.2e-09 Score=99.64 Aligned_cols=111 Identities=18% Similarity=0.218 Sum_probs=89.2
Q ss_pred chhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhh-ccccccccccccceecCCCCcccchh-hhcC
Q 005860 518 RSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKI-LKGIEKLIHLRYLRLVGLGTEELPET-CCEL 595 (673)
Q Consensus 518 r~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~LP~~-i~~L 595 (673)
+++++.++.. ..+|..+ .+.|+.|+|++ +.+..+ |..+..+++|++|+|++|.+..+|.. +.+|
T Consensus 15 ~~l~~~~n~l-----~~iP~~~--~~~L~~L~Ls~-------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l 80 (174)
T 2r9u_A 15 TLVNCQNIRL-----ASVPAGI--PTDKQRLWLNN-------NQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKL 80 (174)
T ss_dssp SEEECCSSCC-----SSCCSCC--CTTCSEEECCS-------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cEEEeCCCCC-----CccCCCc--CCCCcEEEeCC-------CCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCc
Confidence 5667776653 1223222 37899999999 998887 55789999999999999999999976 4899
Q ss_pred CCccEEEeccCCCCcccccc-ccccccCCeeeccccccccccccCCCCC
Q 005860 596 LNLQVLEIEQCTSLKRLPLG-IGKLVNLRHLTYDDSCLEFIPKGIQRLT 643 (673)
Q Consensus 596 ~~L~~L~l~~c~~l~~lP~~-i~~L~~Lr~L~l~~~~l~~lP~~i~~L~ 643 (673)
++|++|+|+++. +..+|.. ++.+++|++|++++|.+...|..+..|.
T Consensus 81 ~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~ 128 (174)
T 2r9u_A 81 TQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLR 128 (174)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHH
T ss_pred chhhEEECCCCc-cceeCHHHhccccCCCEEEeCCCCcccccccHHHHH
Confidence 999999999976 8899876 8999999999999999887776555444
No 131
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.88 E-value=8.1e-10 Score=121.78 Aligned_cols=130 Identities=18% Similarity=0.176 Sum_probs=68.1
Q ss_pred cCceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccccc
Q 005860 491 QEKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIE 570 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~ 570 (673)
..+++.+.+..+....+|. +.. +|++|.+.+|.+. . +|. .+++|+.|++++ |.+..+|.
T Consensus 99 l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~----~-lp~---~l~~L~~L~Ls~-------N~l~~lp~--- 157 (571)
T 3cvr_A 99 PASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLT----M-LPE---LPALLEYINADN-------NQLTMLPE--- 157 (571)
T ss_dssp CTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCS----C-CCC---CCTTCCEEECCS-------SCCSCCCC---
T ss_pred cCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCC----C-CCC---cCccccEEeCCC-------CccCcCCC---
Confidence 3455566665555544444 322 5666666555421 1 222 345566666666 55555554
Q ss_pred cccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccccccccccC-------CeeeccccccccccccCCCCC
Q 005860 571 KLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNL-------RHLTYDDSCLEFIPKGIQRLT 643 (673)
Q Consensus 571 ~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L-------r~L~l~~~~l~~lP~~i~~L~ 643 (673)
.+++|++|+|++|.+..+|. ++ ++|++|+|++|. +..+|. +.. +| +.|++++|.++.+|.++.+++
T Consensus 158 ~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~ 230 (571)
T 3cvr_A 158 LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLD 230 (571)
T ss_dssp CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSC
T ss_pred cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCC
Confidence 34556666666666555555 44 566666666543 555555 433 44 666666666666665555555
Q ss_pred CCCcC
Q 005860 644 NLRTL 648 (673)
Q Consensus 644 ~L~~L 648 (673)
+|+.|
T Consensus 231 ~L~~L 235 (571)
T 3cvr_A 231 PTCTI 235 (571)
T ss_dssp TTEEE
T ss_pred CCCEE
Confidence 54443
No 132
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.88 E-value=9.5e-10 Score=114.61 Aligned_cols=161 Identities=17% Similarity=0.151 Sum_probs=109.0
Q ss_pred cCceEEEEEEcCCCCccccc-cccccccchhhhccchhhh----------------------hhhhhHHHHhhhCCccce
Q 005860 491 QEKLRHSMLVLGYEASFPIS-IFKAKNLRSLFINNTLIQV----------------------SLTHVLQSLFDQLKCLRA 547 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~----------------------~~~~~~~~~~~~l~~L~~ 547 (673)
+.+++.+.+..+....+++. +..+++|++|+++++.... .+....+..|..+++|+.
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 34566677776666655543 4556777777666554210 012233556778888999
Q ss_pred eeecccc--ccc----------------cccchhhhcc-ccccc-cccccceecCCCCcccchhhhcCCCccEEEeccCC
Q 005860 548 LRIATLM--NTW----------------DVNSTNKILK-GIEKL-IHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCT 607 (673)
Q Consensus 548 L~L~~~~--~~~----------------~~~~~~~lp~-~i~~L-~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~ 607 (673)
|++++-. ... +.+.+..+|. .+..+ ..|++|+|++|.++.+|..+....+|+.|++++++
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n 188 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNN 188 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCT
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCC
Confidence 9887710 000 0011222222 22333 35888999999999999988888899999999888
Q ss_pred CCcccccc-ccccccCCeeecccccccccccc-CCCCCCCCcCCee
Q 005860 608 SLKRLPLG-IGKLVNLRHLTYDDSCLEFIPKG-IQRLTNLRTLSEF 651 (673)
Q Consensus 608 ~l~~lP~~-i~~L~~Lr~L~l~~~~l~~lP~~-i~~L~~L~~L~~~ 651 (673)
.+..+|.+ +..+++|++|++++|.++.+|.+ +.+|++|+.+...
T Consensus 189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 234 (350)
T ss_dssp TCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCT
T ss_pred cccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCC
Confidence 89999975 69999999999999999999875 6667777666543
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.87 E-value=2.9e-09 Score=98.47 Aligned_cols=107 Identities=18% Similarity=0.191 Sum_probs=81.3
Q ss_pred ccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhh-ccccccccccccceecCCCCcccchh-hh
Q 005860 516 NLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKI-LKGIEKLIHLRYLRLVGLGTEELPET-CC 593 (673)
Q Consensus 516 ~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~LP~~-i~ 593 (673)
..+++++.++.. .. +|..+ .+.|+.|+|++ +.+..+ |..+..+.+|++|+|++|.+..+|+. +.
T Consensus 10 ~~~~l~~s~n~l----~~-ip~~~--~~~l~~L~L~~-------N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~ 75 (170)
T 3g39_A 10 SGTTVDCSGKSL----AS-VPTGI--PTTTQVLYLYD-------NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD 75 (170)
T ss_dssp ETTEEECTTSCC----SS-CCSCC--CTTCSEEECCS-------SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred CCCEEEeCCCCc----Cc-cCccC--CCCCcEEEcCC-------CcCCccChhhhcCcccCCEEECCCCCcCccChhhcc
Confidence 356677777653 12 22222 37788999999 888877 55688899999999999998888875 47
Q ss_pred cCCCccEEEeccCCCCcccccc-ccccccCCeeeccccccccccc
Q 005860 594 ELLNLQVLEIEQCTSLKRLPLG-IGKLVNLRHLTYDDSCLEFIPK 637 (673)
Q Consensus 594 ~L~~L~~L~l~~c~~l~~lP~~-i~~L~~Lr~L~l~~~~l~~lP~ 637 (673)
.+++|++|+|+++. +..+|.. +.++++|++|++++|.+...++
T Consensus 76 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 76 KLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 89999999999865 8888864 7889999999998887765443
No 134
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.86 E-value=1.5e-08 Score=97.81 Aligned_cols=148 Identities=16% Similarity=0.090 Sum_probs=91.1
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccC-CeEEEEEcCCcccHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYF-DKRMWVCVSDPFDELRIAKA 247 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~ 247 (673)
.+++|++..++.+..++.... ...+.|+|++|+|||+||+.+++... ...+ ...+.+..+.......+...
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~-------~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN-------IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHK 88 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC-------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC-------CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHH
Confidence 468999999999999986543 22389999999999999999987421 1122 22344444443333322221
Q ss_pred HHHHhhCCCCCcCcHHHHHHHHHHHhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCChhH-HH-hcccc
Q 005860 248 IIEALEGFVPTVGELNSLLESIRASLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKETV-AR-MMESI 325 (673)
Q Consensus 248 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v-~~-~~~~~ 325 (673)
+. .+.... ....+++.+||+||+..-.....+.+...+.....+.++|+||+.... .. .....
T Consensus 89 ~~-~~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~ 153 (226)
T 2chg_A 89 IK-EFARTA--------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (226)
T ss_dssp HH-HHHTSC--------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HH-HHhccc--------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhC
Confidence 11 111100 011357899999999655445556666666655667889998876431 11 11223
Q ss_pred ceeecCCCCccccc
Q 005860 326 HVISIKELSEQECW 339 (673)
Q Consensus 326 ~~~~l~~L~~~~~~ 339 (673)
..+++.+++.++..
T Consensus 154 ~~i~~~~~~~~~~~ 167 (226)
T 2chg_A 154 AVFRFKPVPKEAMK 167 (226)
T ss_dssp EEEECCCCCHHHHH
T ss_pred ceeecCCCCHHHHH
Confidence 47888999887753
No 135
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.85 E-value=1.1e-09 Score=118.34 Aligned_cols=36 Identities=8% Similarity=0.025 Sum_probs=11.1
Q ss_pred CceEEEEEEcCCCCccccccccccccchhhhccchh
Q 005860 492 EKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLI 527 (673)
Q Consensus 492 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~ 527 (673)
..++.+.+..+....+|..+.++++|++|.+.++.+
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~ 46 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEW 46 (454)
T ss_dssp -----------------------CCHHHHHHHHHHH
T ss_pred ccchhhhcccCchhhCChhHhcccchhhhhccCCcc
Confidence 457777787777777888899999999999988764
No 136
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.85 E-value=3.7e-09 Score=117.98 Aligned_cols=122 Identities=25% Similarity=0.177 Sum_probs=86.9
Q ss_pred ccCceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhcccc
Q 005860 490 YQEKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGI 569 (673)
Q Consensus 490 ~~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i 569 (673)
...+++.+.+..+....+|. .+++|++|.+.+|.. .. ++. .+++|+.|++++ |.+..+|..+
T Consensus 79 ~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l----~~-l~~---~l~~L~~L~L~~-------N~l~~lp~~l 140 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPL----TH-LPA---LPSGLCKLWIFG-------NQLTSLPVLP 140 (622)
T ss_dssp CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCC----CC-CCC---CCTTCCEEECCS-------SCCSCCCCCC
T ss_pred cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcC----CC-CCC---CCCCcCEEECCC-------CCCCcCCCCC
Confidence 46789999999988777765 678999999998864 11 222 567889999988 8888887753
Q ss_pred ccccccccceecCCCCcccchhhhcC-----------------CCccEEEeccCCCCccccccccccccCCeeecccccc
Q 005860 570 EKLIHLRYLRLVGLGTEELPETCCEL-----------------LNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCL 632 (673)
Q Consensus 570 ~~L~~Lr~L~L~~~~i~~LP~~i~~L-----------------~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l 632 (673)
++|++|+|++|.+..+|..+.+| ++|++|++++|. +..+|..+ ++|+.|++++|.+
T Consensus 141 ---~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~-l~~l~~~~---~~L~~L~L~~N~l 213 (622)
T 3g06_A 141 ---PGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQ-LASLPTLP---SELYKLWAYNNRL 213 (622)
T ss_dssp ---TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC-CSCCCCCC---TTCCEEECCSSCC
T ss_pred ---CCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCC-CCCCCCcc---chhhEEECcCCcc
Confidence 77888888888877766544333 788999999876 87777543 3444455444444
Q ss_pred cccc
Q 005860 633 EFIP 636 (673)
Q Consensus 633 ~~lP 636 (673)
..+|
T Consensus 214 ~~l~ 217 (622)
T 3g06_A 214 TSLP 217 (622)
T ss_dssp SSCC
T ss_pred cccC
Confidence 4444
No 137
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.83 E-value=9.9e-10 Score=116.11 Aligned_cols=127 Identities=18% Similarity=0.253 Sum_probs=81.7
Q ss_pred cccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchh------hhccccccccccccceecCCCC---
Q 005860 515 KNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTN------KILKGIEKLIHLRYLRLVGLGT--- 585 (673)
Q Consensus 515 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~------~lp~~i~~L~~Lr~L~L~~~~i--- 585 (673)
++|++|.+.+|.........+...+..+++|+.|++++ |.+. -.|..+..+++|++|+|++|.+
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~-------n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~ 231 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ-------NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL 231 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCS-------SCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcC-------CCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH
Confidence 66777777766542111122234556677777777777 6544 2333677777788888877776
Q ss_pred --cccchhhhcCCCccEEEeccCCCCcc-----ccccc--cccccCCeeecccccccc-----ccccC-CCCCCCCcCC
Q 005860 586 --EELPETCCELLNLQVLEIEQCTSLKR-----LPLGI--GKLVNLRHLTYDDSCLEF-----IPKGI-QRLTNLRTLS 649 (673)
Q Consensus 586 --~~LP~~i~~L~~L~~L~l~~c~~l~~-----lP~~i--~~L~~Lr~L~l~~~~l~~-----lP~~i-~~L~~L~~L~ 649 (673)
..+|..+..+++|++|+|++|. +.. +|..+ +++++|++|++++|.+.. +|..+ .++++|++|.
T Consensus 232 g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 232 GSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309 (386)
T ss_dssp HHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence 5677777777788888887766 543 45555 447778888877777776 77665 4456666553
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.81 E-value=7e-09 Score=96.51 Aligned_cols=100 Identities=30% Similarity=0.482 Sum_probs=85.5
Q ss_pred CCccceeeeccccccccccchhhhccc-cccccccccceecCCCCcccchh-hhcCCCccEEEeccCCCCcccccc-ccc
Q 005860 542 LKCLRALRIATLMNTWDVNSTNKILKG-IEKLIHLRYLRLVGLGTEELPET-CCELLNLQVLEIEQCTSLKRLPLG-IGK 618 (673)
Q Consensus 542 l~~L~~L~L~~~~~~~~~~~~~~lp~~-i~~L~~Lr~L~L~~~~i~~LP~~-i~~L~~L~~L~l~~c~~l~~lP~~-i~~ 618 (673)
.+.|+.|++++ +.+..+|.. ++.+.+|++|+|++|.+..+|.. ++.+++|++|+++++. +..+|.. +++
T Consensus 27 ~~~l~~L~l~~-------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~ 98 (177)
T 2o6r_A 27 PSSATRLELES-------NKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDK 98 (177)
T ss_dssp CTTCSEEECCS-------SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred CCCCcEEEeCC-------CcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccccCHHHhhC
Confidence 36899999999 888887765 68999999999999999999865 6899999999999976 8888865 689
Q ss_pred cccCCeeeccccccccccccC-CCCCCCCcCC
Q 005860 619 LVNLRHLTYDDSCLEFIPKGI-QRLTNLRTLS 649 (673)
Q Consensus 619 L~~Lr~L~l~~~~l~~lP~~i-~~L~~L~~L~ 649 (673)
+++|++|++++|.+..+|..+ ..+++|+.|.
T Consensus 99 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 99 LTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 999999999999999998764 6666666653
No 139
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.81 E-value=1.1e-09 Score=115.81 Aligned_cols=137 Identities=17% Similarity=0.147 Sum_probs=94.0
Q ss_pred CceEEEEEEcCCCC--ccc---cccccccccchhhhccchhhh-hhhhhHHHHhhhCCccceeeeccccccccccch---
Q 005860 492 EKLRHSMLVLGYEA--SFP---ISIFKAKNLRSLFINNTLIQV-SLTHVLQSLFDQLKCLRALRIATLMNTWDVNST--- 562 (673)
Q Consensus 492 ~~~r~l~l~~~~~~--~~~---~~~~~~~~Lr~L~l~~~~~~~-~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~--- 562 (673)
.+++++.+..+... ..+ ..+..+++|++|.+.+|.... ......+..+..+++|+.|+|++ |.+
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~-------n~l~~~ 231 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD-------NTFTHL 231 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCS-------SCCHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcC-------CCCCcH
Confidence 57778877776653 222 234467788888888776421 11223343667788888888888 766
Q ss_pred --hhhccccccccccccceecCCCCcc-----cchhh--hcCCCccEEEeccCCCCcc-----ccccc-cccccCCeeec
Q 005860 563 --NKILKGIEKLIHLRYLRLVGLGTEE-----LPETC--CELLNLQVLEIEQCTSLKR-----LPLGI-GKLVNLRHLTY 627 (673)
Q Consensus 563 --~~lp~~i~~L~~Lr~L~L~~~~i~~-----LP~~i--~~L~~L~~L~l~~c~~l~~-----lP~~i-~~L~~Lr~L~l 627 (673)
..+|..+..+++|++|+|++|.+.. +|..+ +++++|++|+|++|. +.. +|..+ .++++|++|++
T Consensus 232 g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 232 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEc
Confidence 5577778888888888888887654 46666 347888888888876 655 77777 66788888888
Q ss_pred ccccccccc
Q 005860 628 DDSCLEFIP 636 (673)
Q Consensus 628 ~~~~l~~lP 636 (673)
++|.+...+
T Consensus 311 ~~N~l~~~~ 319 (386)
T 2ca6_A 311 NGNRFSEED 319 (386)
T ss_dssp TTSBSCTTS
T ss_pred cCCcCCcch
Confidence 887766443
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.79 E-value=4.3e-09 Score=97.63 Aligned_cols=110 Identities=25% Similarity=0.214 Sum_probs=80.9
Q ss_pred EEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccc-ccccccc
Q 005860 497 SMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKG-IEKLIHL 575 (673)
Q Consensus 497 l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~-i~~L~~L 575 (673)
+.+..+....+|..+. ++|+.|.+.++.+ ....+..|.++++|+.|+|++ +.+..+|.. +..+.+|
T Consensus 17 l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l----~~~~~~~~~~l~~L~~L~Ls~-------N~l~~i~~~~~~~l~~L 83 (174)
T 2r9u_A 17 VNCQNIRLASVPAGIP--TDKQRLWLNNNQI----TKLEPGVFDHLVNLQQLYFNS-------NKLTAIPTGVFDKLTQL 83 (174)
T ss_dssp EECCSSCCSSCCSCCC--TTCSEEECCSSCC----CCCCTTTTTTCTTCCEEECCS-------SCCCCCCTTTTTTCTTC
T ss_pred EEeCCCCCCccCCCcC--CCCcEEEeCCCCc----cccCHHHhcCCcCCCEEECCC-------CCCCccChhHhCCcchh
Confidence 4444444455565443 7788888888763 344566778888888888888 888888776 4788888
Q ss_pred ccceecCCCCcccchh-hhcCCCccEEEeccCCCCccccccccccc
Q 005860 576 RYLRLVGLGTEELPET-CCELLNLQVLEIEQCTSLKRLPLGIGKLV 620 (673)
Q Consensus 576 r~L~L~~~~i~~LP~~-i~~L~~L~~L~l~~c~~l~~lP~~i~~L~ 620 (673)
++|+|++|.+..+|+. +..+++|++|+|++++ +...|..+..|.
T Consensus 84 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~~~~~l~ 128 (174)
T 2r9u_A 84 TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP-WDCECRDIMYLR 128 (174)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-BCTTBGGGHHHH
T ss_pred hEEECCCCccceeCHHHhccccCCCEEEeCCCC-cccccccHHHHH
Confidence 8899888888888875 8888888888888866 776666555444
No 141
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.75 E-value=6.1e-09 Score=114.78 Aligned_cols=122 Identities=20% Similarity=0.219 Sum_probs=101.2
Q ss_pred cCceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccccc
Q 005860 491 QEKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIE 570 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~ 570 (673)
..+++.+.+..+....+| ..+++|++|++.+|.+ .. +|. +.+ +|+.|++++ |.+..+|.
T Consensus 79 ~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l----~~-ip~-l~~--~L~~L~Ls~-------N~l~~lp~--- 137 (571)
T 3cvr_A 79 PPQITVLEITQNALISLP---ELPASLEYLDACDNRL----ST-LPE-LPA--SLKHLDVDN-------NQLTMLPE--- 137 (571)
T ss_dssp CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCC----SC-CCC-CCT--TCCEEECCS-------SCCSCCCC---
T ss_pred cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCC----CC-cch-hhc--CCCEEECCC-------CcCCCCCC---
Confidence 467899999988887766 3578999999998874 22 333 333 899999999 88888887
Q ss_pred cccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccccccccCCC
Q 005860 571 KLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKGIQR 641 (673)
Q Consensus 571 ~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~i~~ 641 (673)
.+++|++|+|++|.++.+|. .+++|++|+|++|. +..+|. ++ ++|++|++++|.++.+|. +..
T Consensus 138 ~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~ 200 (571)
T 3cvr_A 138 LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE-LP--ESLEALDVSTNLLESLPA-VPV 200 (571)
T ss_dssp CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC-CC--TTCCEEECCSSCCSSCCC-CC-
T ss_pred cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch-hh--CCCCEEECcCCCCCchhh-HHH
Confidence 68899999999999999997 67899999999976 888998 66 899999999999999998 654
No 142
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.74 E-value=5.9e-09 Score=112.43 Aligned_cols=133 Identities=21% Similarity=0.228 Sum_probs=84.2
Q ss_pred CceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhcccccc
Q 005860 492 EKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIEK 571 (673)
Q Consensus 492 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~~ 571 (673)
.+++.+.+..+....++.. .++|++|.+.++.. .. +| .|.++++|++|++++ +.+..+|..+
T Consensus 111 ~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l----~~-lp-~~~~l~~L~~L~l~~-------N~l~~lp~~~-- 172 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQL----EK-LP-ELQNSSFLKIIDVDN-------NSLKKLPDLP-- 172 (454)
T ss_dssp TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCC----SS-CC-CCTTCTTCCEEECCS-------SCCSCCCCCC--
T ss_pred CCCcEEECCCCccCcccCC---CCCCCEEECcCCCC----CC-Cc-ccCCCCCCCEEECCC-------CcCcccCCCc--
Confidence 4556666655544333221 14667777766653 11 23 366777777777777 6666666543
Q ss_pred ccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccccccccCCCCCCCCcCC
Q 005860 572 LIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKGIQRLTNLRTLS 649 (673)
Q Consensus 572 L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~i~~L~~L~~L~ 649 (673)
.+|++|++++|.+..+| +++++++|++|++++|. +..+|... .+|++|++++|.+..+| .++.+++|++|.
T Consensus 173 -~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~ 243 (454)
T 1jl5_A 173 -PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIY 243 (454)
T ss_dssp -TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEE
T ss_pred -ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEE
Confidence 36777777777777776 47777777777777765 66666433 46777777777777777 366666666654
No 143
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.69 E-value=4e-08 Score=100.88 Aligned_cols=148 Identities=18% Similarity=0.189 Sum_probs=91.7
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccC-CeEEEEEcCCcccHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYF-DKRMWVCVSDPFDELRIAKA 247 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~ 247 (673)
.+++|++..++.+..++.... .+.+.|+|++|+||||+|+.+++... ...+ ...+++..++...... .++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~-------~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~-i~~ 91 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN-------MPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGIDV-VRN 91 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC-------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHHH-HHT
T ss_pred HHHHCCHHHHHHHHHHHHcCC-------CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChHH-HHH
Confidence 579999999999999986543 22389999999999999999988521 1112 1244454444323221 122
Q ss_pred HHHHhhCCCCCcCcHHHHHHHHHHHh-CCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCChh-HHH-hccc
Q 005860 248 IIEALEGFVPTVGELNSLLESIRASL-VGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKET-VAR-MMES 324 (673)
Q Consensus 248 i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~-~~~~ 324 (673)
+++.+.... ..+ .+++.+||+||++.-....++.+...+.....++.+|+||.... +.. ....
T Consensus 92 ~~~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr 157 (323)
T 1sxj_B 92 QIKHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ 157 (323)
T ss_dssp HHHHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred HHHHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhh
Confidence 222221000 011 45688999999966555556667766666566788888887643 111 1122
Q ss_pred cceeecCCCCccccc
Q 005860 325 IHVISIKELSEQECW 339 (673)
Q Consensus 325 ~~~~~l~~L~~~~~~ 339 (673)
...+++.+++.++..
T Consensus 158 ~~~i~~~~~~~~~~~ 172 (323)
T 1sxj_B 158 CAILRYSKLSDEDVL 172 (323)
T ss_dssp SEEEECCCCCHHHHH
T ss_pred ceEEeecCCCHHHHH
Confidence 457889999887754
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.65 E-value=3.4e-08 Score=91.15 Aligned_cols=98 Identities=22% Similarity=0.262 Sum_probs=60.9
Q ss_pred EEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccc-ccccccc
Q 005860 497 SMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKG-IEKLIHL 575 (673)
Q Consensus 497 l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~-i~~L~~L 575 (673)
+.+..+....+|..+ .++|++|++.++.+ ....+..|.++++|++|+|++ +.+..+|+. +..+.+|
T Consensus 14 l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i----~~~~~~~~~~l~~L~~L~Ls~-------N~l~~l~~~~f~~l~~L 80 (170)
T 3g39_A 14 VDCSGKSLASVPTGI--PTTTQVLYLYDNQI----TKLEPGVFDRLTQLTRLDLDN-------NQLTVLPAGVFDKLTQL 80 (170)
T ss_dssp EECTTSCCSSCCSCC--CTTCSEEECCSSCC----CCCCTTTTTTCTTCSEEECCS-------SCCCCCCTTTTTTCTTC
T ss_pred EEeCCCCcCccCccC--CCCCcEEEcCCCcC----CccChhhhcCcccCCEEECCC-------CCcCccChhhccCCCCC
Confidence 333333444444433 25677777776652 333455566777777777777 766666654 3667777
Q ss_pred ccceecCCCCcccchh-hhcCCCccEEEeccCC
Q 005860 576 RYLRLVGLGTEELPET-CCELLNLQVLEIEQCT 607 (673)
Q Consensus 576 r~L~L~~~~i~~LP~~-i~~L~~L~~L~l~~c~ 607 (673)
++|+|++|.+..+|+. +..+++|++|+|++++
T Consensus 81 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 81 TQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 7777777777777653 6677777777777654
No 145
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.51 E-value=1e-07 Score=97.90 Aligned_cols=50 Identities=26% Similarity=0.401 Sum_probs=38.0
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+++|++..++.+..++...... ......|.|+|++|+||||||+.+++.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~--~~~~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKAR--KEPLEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHH--CSCCCCCEEECCTTCCCHHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHcc--CCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999988887532100 012356889999999999999999884
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.48 E-value=1.6e-07 Score=97.53 Aligned_cols=87 Identities=18% Similarity=0.175 Sum_probs=52.3
Q ss_pred hhhCCccceeeec-cccccccccchhhhc-cccccccccccceecCCCCcccch-hhhcCCCccEEEeccCCCCcccccc
Q 005860 539 FDQLKCLRALRIA-TLMNTWDVNSTNKIL-KGIEKLIHLRYLRLVGLGTEELPE-TCCELLNLQVLEIEQCTSLKRLPLG 615 (673)
Q Consensus 539 ~~~l~~L~~L~L~-~~~~~~~~~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~LP~-~i~~L~~L~~L~l~~c~~l~~lP~~ 615 (673)
+..+.+|+.|+|+ . +.+..+| ..++.|.+|++|+|++|.+..+|+ .|.+|++|++|+|+++. +..+|..
T Consensus 27 l~~~~~L~~L~l~~~-------n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~ 98 (347)
T 2ifg_A 27 LPGAENLTELYIENQ-------QHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWK 98 (347)
T ss_dssp SCSCSCCSEEECCSC-------SSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCST
T ss_pred CCCCCCeeEEEccCC-------CCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cceeCHH
Confidence 5566666666665 3 4455554 346666666666666666666553 45666666666666644 6666654
Q ss_pred ccccccCCeeeccccccc
Q 005860 616 IGKLVNLRHLTYDDSCLE 633 (673)
Q Consensus 616 i~~L~~Lr~L~l~~~~l~ 633 (673)
+....+|+.|++.+|.+.
T Consensus 99 ~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 99 TVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp TTCSCCCCEEECCSSCCC
T ss_pred HcccCCceEEEeeCCCcc
Confidence 433333666666665544
No 147
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.44 E-value=1.8e-07 Score=97.72 Aligned_cols=132 Identities=13% Similarity=0.039 Sum_probs=72.2
Q ss_pred CceEEEEEEcCCCCccccc-----ccc-ccccchhhhccchhhhhhhhhHHHHhhhCC-ccceeeeccccccccccchhh
Q 005860 492 EKLRHSMLVLGYEASFPIS-----IFK-AKNLRSLFINNTLIQVSLTHVLQSLFDQLK-CLRALRIATLMNTWDVNSTNK 564 (673)
Q Consensus 492 ~~~r~l~l~~~~~~~~~~~-----~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~~~~~~~~~~~~~ 564 (673)
.+++.+.+..+.....+.. +.. .++|++|++.+|.........++..+..++ .|+.|++++ |.+..
T Consensus 109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-------n~l~~ 181 (362)
T 3goz_A 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG-------NNLAS 181 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT-------SCGGG
T ss_pred CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC-------CCCch
Confidence 4566666666554333221 112 246677776666543222233444445554 677777776 65543
Q ss_pred h-cc----ccccc-cccccceecCCCCcc-----cchhhhcC-CCccEEEeccCCCCcccc-----ccccccccCCeeec
Q 005860 565 I-LK----GIEKL-IHLRYLRLVGLGTEE-----LPETCCEL-LNLQVLEIEQCTSLKRLP-----LGIGKLVNLRHLTY 627 (673)
Q Consensus 565 l-p~----~i~~L-~~Lr~L~L~~~~i~~-----LP~~i~~L-~~L~~L~l~~c~~l~~lP-----~~i~~L~~Lr~L~l 627 (673)
. +. .+..+ .+|++|+|++|.+.. +|..+..+ ++|++|+|++|. +...+ ..+..+++|++|++
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L 260 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYL 260 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEe
Confidence 2 22 22333 467777777776665 66666654 367777777654 54433 22355666777777
Q ss_pred cccc
Q 005860 628 DDSC 631 (673)
Q Consensus 628 ~~~~ 631 (673)
++|.
T Consensus 261 ~~n~ 264 (362)
T 3goz_A 261 DYDI 264 (362)
T ss_dssp EHHH
T ss_pred ccCC
Confidence 6665
No 148
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.44 E-value=5.6e-07 Score=90.81 Aligned_cols=114 Identities=11% Similarity=-0.000 Sum_probs=75.9
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccc------cCCeEEEEEcCCcccHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFE------YFDKRMWVCVSDPFDEL 242 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------~F~~~~wv~vs~~~~~~ 242 (673)
..+.|||+++++|...|...-. ......+.|+|++|+|||++|+.|.+...... .| ..++|....-.+..
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~---~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~ 95 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLM---SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--H
T ss_pred cccCCHHHHHHHHHHHHHHHhc---CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHH
Confidence 3489999999999988754321 13456789999999999999999998632111 12 35667766777888
Q ss_pred HHHHHHHHHhhCCCCCcC-cHHHHHHHHHHH--hCCCeEEEEEcCCC
Q 005860 243 RIAKAIIEALEGFVPTVG-ELNSLLESIRAS--LVGKKFLLILDDMW 286 (673)
Q Consensus 243 ~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~~--l~~kr~LlVLDdvw 286 (673)
.++..|++++.+...... ..+.+...+... -.+++++|+||++.
T Consensus 96 ~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d 142 (318)
T 3te6_A 96 ALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPE 142 (318)
T ss_dssp HHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCS
T ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHH
Confidence 999999999976532222 223333333322 25678999999993
No 149
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.43 E-value=5.5e-07 Score=92.40 Aligned_cols=148 Identities=13% Similarity=0.108 Sum_probs=89.2
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccC-CeEEEEEcCCcccHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYF-DKRMWVCVSDPFDELRIAKA 247 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~ 247 (673)
.+++|++..++.+..++.... ...+.|+|++|+||||+|+.+++... ...+ ...+.+..++......+ +.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~-------~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~-~~ 95 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS-------MPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGINVI-RE 95 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC-------CCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHHHTT-HH
T ss_pred HHhhCCHHHHHHHHHHHHcCC-------CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCchHHH-HH
Confidence 569999999999999886543 33489999999999999999988521 1111 12344444432221111 11
Q ss_pred HHHHhhCCCCCcCcHHHHHHHHHHHhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCChhH-HH-hcccc
Q 005860 248 IIEALEGFVPTVGELNSLLESIRASLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKETV-AR-MMESI 325 (673)
Q Consensus 248 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v-~~-~~~~~ 325 (673)
.+..+... .....+++.+||+||+..-....++.+...+.....++++|+||....- .. .....
T Consensus 96 ~~~~~~~~--------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 161 (327)
T 1iqp_A 96 KVKEFART--------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC 161 (327)
T ss_dssp HHHHHHHS--------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTE
T ss_pred HHHHHHhh--------------CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhC
Confidence 11111000 0011257889999999665555666677666666677889988876431 11 11123
Q ss_pred ceeecCCCCccccc
Q 005860 326 HVISIKELSEQECW 339 (673)
Q Consensus 326 ~~~~l~~L~~~~~~ 339 (673)
..+.+.+++.++..
T Consensus 162 ~~~~~~~l~~~~~~ 175 (327)
T 1iqp_A 162 AIFRFRPLRDEDIA 175 (327)
T ss_dssp EEEECCCCCHHHHH
T ss_pred cEEEecCCCHHHHH
Confidence 46788888877643
No 150
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.43 E-value=3.1e-08 Score=103.60 Aligned_cols=150 Identities=12% Similarity=0.115 Sum_probs=98.6
Q ss_pred CceEEEEEEcCCCCccccc-----cccc-cccchhhhccchhhhhhhhhHHHHhhhC-Cccceeeeccccccccccchh-
Q 005860 492 EKLRHSMLVLGYEASFPIS-----IFKA-KNLRSLFINNTLIQVSLTHVLQSLFDQL-KCLRALRIATLMNTWDVNSTN- 563 (673)
Q Consensus 492 ~~~r~l~l~~~~~~~~~~~-----~~~~-~~Lr~L~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~~~~~~~~~~~~- 563 (673)
..++.+.+..+........ +..+ ++|++|++.++.........+...+..+ +.|+.|++++ |.+.
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-------N~l~~ 152 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRG-------NDLGI 152 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTT-------SCGGG
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccC-------CcCCH
Confidence 6788888877765433322 2333 6888888888775333333344445553 5888888888 6655
Q ss_pred ----hhcccccccc-ccccceecCCCCcccc-hh----hhcC-CCccEEEeccCCCCcc-----cccccccc-ccCCeee
Q 005860 564 ----KILKGIEKLI-HLRYLRLVGLGTEELP-ET----CCEL-LNLQVLEIEQCTSLKR-----LPLGIGKL-VNLRHLT 626 (673)
Q Consensus 564 ----~lp~~i~~L~-~Lr~L~L~~~~i~~LP-~~----i~~L-~~L~~L~l~~c~~l~~-----lP~~i~~L-~~Lr~L~ 626 (673)
.++..+..+. +|++|+|++|.+...+ .. +..+ ++|++|+|++|. +.. +|..+..+ ++|++|+
T Consensus 153 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~ 231 (362)
T 3goz_A 153 KSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLN 231 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEE
T ss_pred HHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEE
Confidence 4555666665 8999999998876544 33 3444 589999999876 666 77777664 4899999
Q ss_pred ccccccccccc-----cCCCCCCCCcCC
Q 005860 627 YDDSCLEFIPK-----GIQRLTNLRTLS 649 (673)
Q Consensus 627 l~~~~l~~lP~-----~i~~L~~L~~L~ 649 (673)
+++|.+...+. .+..+++|++|.
T Consensus 232 Ls~N~l~~~~~~~l~~~~~~l~~L~~L~ 259 (362)
T 3goz_A 232 LCLNCLHGPSLENLKLLKDSLKHLQTVY 259 (362)
T ss_dssp CCSSCCCCCCHHHHHHTTTTTTTCSEEE
T ss_pred CcCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence 98888776432 235555555553
No 151
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.39 E-value=2.5e-07 Score=96.10 Aligned_cols=145 Identities=20% Similarity=0.181 Sum_probs=97.3
Q ss_pred cCceEEEEEEcCCCCccccc-cccccccchhhhccchhhhhhhhhHHHHhhhC-Cccceeeeccccccccccchhhhccc
Q 005860 491 QEKLRHSMLVLGYEASFPIS-IFKAKNLRSLFINNTLIQVSLTHVLQSLFDQL-KCLRALRIATLMNTWDVNSTNKILKG 568 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~~~~~~~~~~~~~lp~~ 568 (673)
..+++.+.+..+.....++. +....++..|.+.++.. +....+..|..+ ..++.|++++ +.+..+|..
T Consensus 103 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~---i~~l~~~~f~~~~~~l~~L~L~~-------N~i~~i~~~ 172 (350)
T 4ay9_X 103 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN---IHTIERNSFVGLSFESVILWLNK-------NGIQEIHNS 172 (350)
T ss_dssp CTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTT---CCEECTTSSTTSBSSCEEEECCS-------SCCCEECTT
T ss_pred ccccccccccccccccCCchhhcccchhhhhhhccccc---cccccccchhhcchhhhhhcccc-------ccccCCChh
Confidence 45677788777766554432 23445555665544321 122233334444 3588899988 888888888
Q ss_pred cccccccccceecCC-CCcccch-hhhcCCCccEEEeccCCCCccccccccccccCCeee-ccccccccccccCCCCCCC
Q 005860 569 IEKLIHLRYLRLVGL-GTEELPE-TCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLT-YDDSCLEFIPKGIQRLTNL 645 (673)
Q Consensus 569 i~~L~~Lr~L~L~~~-~i~~LP~-~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~-l~~~~l~~lP~~i~~L~~L 645 (673)
+....+|+.|++.++ .++.+|. .+..+++|++|+++++. +..+|.. .+.+|++|. +..+.++.+|. +.+|++|
T Consensus 173 ~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L 248 (350)
T 4ay9_X 173 AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSY--GLENLKKLRARSTYNLKKLPT-LEKLVAL 248 (350)
T ss_dssp SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSC
T ss_pred hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChh--hhccchHhhhccCCCcCcCCC-chhCcCh
Confidence 888888999999764 4899986 46889999999999875 8899864 244555555 44566778873 6677777
Q ss_pred CcCC
Q 005860 646 RTLS 649 (673)
Q Consensus 646 ~~L~ 649 (673)
+.+.
T Consensus 249 ~~l~ 252 (350)
T 4ay9_X 249 MEAS 252 (350)
T ss_dssp CEEE
T ss_pred hhCc
Confidence 6654
No 152
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.35 E-value=1.5e-06 Score=81.30 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=38.3
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..++||+++++++.+.+.... .+.+.|+|++|+||||||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~-------~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRT-------KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS-------SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCC-------CCceEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999986543 345789999999999999998874
No 153
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.33 E-value=1.1e-07 Score=102.76 Aligned_cols=133 Identities=14% Similarity=0.141 Sum_probs=86.6
Q ss_pred cCceEEEEEEcCCCC-----ccccccccccccchhhhccchhhhhhhhhHHHHhhhCC----ccceeeeccccccccccc
Q 005860 491 QEKLRHSMLVLGYEA-----SFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLK----CLRALRIATLMNTWDVNS 561 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~-----~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~----~L~~L~L~~~~~~~~~~~ 561 (673)
.++++.+.+..+... .++..+..+++|++|++.++.... ..+..++..++ +|+.|++++ +.
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~---~~~~~l~~~l~~~~~~L~~L~L~~-------n~ 96 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD---VGVHCVLQGLQTPSCKIQKLSLQN-------CC 96 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH---HHHHHHHHTTCSTTCCCCEEECTT-------SC
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh---HHHHHHHHHHhhCCCceeEEEccC-------CC
Confidence 356777777777654 234445566788888887765311 12233344455 688888887 66
Q ss_pred hh-----hhccccccccccccceecCCCCccc-chhhhc-----CCCccEEEeccCCCCcc-----ccccccccccCCee
Q 005860 562 TN-----KILKGIEKLIHLRYLRLVGLGTEEL-PETCCE-----LLNLQVLEIEQCTSLKR-----LPLGIGKLVNLRHL 625 (673)
Q Consensus 562 ~~-----~lp~~i~~L~~Lr~L~L~~~~i~~L-P~~i~~-----L~~L~~L~l~~c~~l~~-----lP~~i~~L~~Lr~L 625 (673)
+. .+|..+..+++|++|+|++|.+... +..+.. +++|++|++++|. +.. +|..+..+++|++|
T Consensus 97 i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L 175 (461)
T 1z7x_W 97 LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKEL 175 (461)
T ss_dssp CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEE
T ss_pred CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEE
Confidence 44 4677778888888888888876532 233322 4578888888875 543 46667778888888
Q ss_pred ecccccccc
Q 005860 626 TYDDSCLEF 634 (673)
Q Consensus 626 ~l~~~~l~~ 634 (673)
++++|.+..
T Consensus 176 ~L~~n~i~~ 184 (461)
T 1z7x_W 176 TVSNNDINE 184 (461)
T ss_dssp ECCSSBCHH
T ss_pred ECcCCCcch
Confidence 888877653
No 154
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.30 E-value=2.1e-07 Score=100.54 Aligned_cols=134 Identities=16% Similarity=0.160 Sum_probs=89.2
Q ss_pred CceEEEEEEcCCCCc-----cccccccccccchhhhccchhhhhhhhhHHHHh-hhCCccceeeeccccccccccchh--
Q 005860 492 EKLRHSMLVLGYEAS-----FPISIFKAKNLRSLFINNTLIQVSLTHVLQSLF-DQLKCLRALRIATLMNTWDVNSTN-- 563 (673)
Q Consensus 492 ~~~r~l~l~~~~~~~-----~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~-- 563 (673)
.+++++.+..+.... ++..+..+++|++|++.++.........+...+ ...+.|+.|++++ |.+.
T Consensus 256 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~-------n~l~~~ 328 (461)
T 1z7x_W 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS-------CSFTAA 328 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT-------SCCBGG
T ss_pred CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC-------CCCchH
Confidence 467777777665543 344455678888888887764222222222222 2335788888888 6543
Q ss_pred ---hhccccccccccccceecCCCCccc-chhhhc-----CCCccEEEeccCCCCc-----cccccccccccCCeeeccc
Q 005860 564 ---KILKGIEKLIHLRYLRLVGLGTEEL-PETCCE-----LLNLQVLEIEQCTSLK-----RLPLGIGKLVNLRHLTYDD 629 (673)
Q Consensus 564 ---~lp~~i~~L~~Lr~L~L~~~~i~~L-P~~i~~-----L~~L~~L~l~~c~~l~-----~lP~~i~~L~~Lr~L~l~~ 629 (673)
.+|..+..+++|++|+|++|.+... +..++. .++|++|++++|. +. .+|..+..+++|++|++++
T Consensus 329 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~ 407 (461)
T 1z7x_W 329 CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSN 407 (461)
T ss_dssp GHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCS
T ss_pred HHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCC
Confidence 3566777778888888888876554 344443 5688888888876 65 6788888888888888888
Q ss_pred cccc
Q 005860 630 SCLE 633 (673)
Q Consensus 630 ~~l~ 633 (673)
|.+.
T Consensus 408 N~i~ 411 (461)
T 1z7x_W 408 NCLG 411 (461)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8765
No 155
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.29 E-value=5.7e-07 Score=93.24 Aligned_cols=96 Identities=25% Similarity=0.176 Sum_probs=75.1
Q ss_pred CCCccccccccccccchhhhcc-chhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhcc-cccccccccccee
Q 005860 503 YEASFPISIFKAKNLRSLFINN-TLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILK-GIEKLIHLRYLRL 580 (673)
Q Consensus 503 ~~~~~~~~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~-~i~~L~~Lr~L~L 580 (673)
....+|. +..+++|+.|++++ +. +....+..|.++.+|+.|+|++ +.+..+|+ .+..|.+|++|+|
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~----l~~~~~~~~~~l~~L~~L~l~~-------N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQH----LQHLELRDLRGLGELRNLTIVK-------SGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSS----CCEECGGGSCSCCCCSEEECCS-------SCCCEECTTGGGSCSCCCEEEC
T ss_pred CCCccCC-CCCCCCeeEEEccCCCC----CCCcChhHhccccCCCEEECCC-------CccceeCHHHhcCCcCCCEEeC
Confidence 3456677 77888999999985 65 3344556788899999999999 88887765 5788999999999
Q ss_pred cCCCCcccchhhhcCCCccEEEeccCCCCcc
Q 005860 581 VGLGTEELPETCCELLNLQVLEIEQCTSLKR 611 (673)
Q Consensus 581 ~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~ 611 (673)
++|.+..+|+.+.....|++|+|.+++ +..
T Consensus 88 ~~N~l~~~~~~~~~~~~L~~l~l~~N~-~~c 117 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLSLQELVLSGNP-LHC 117 (347)
T ss_dssp CSSCCSCCCSTTTCSCCCCEEECCSSC-CCC
T ss_pred CCCccceeCHHHcccCCceEEEeeCCC-ccC
Confidence 999999998776655559999998865 543
No 156
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.27 E-value=1.1e-07 Score=106.40 Aligned_cols=109 Identities=16% Similarity=0.075 Sum_probs=57.8
Q ss_pred HHHHhhhCCccceeeeccccccccccchhhhccccccccccccceecCCC-C---cccchhhhcCCCccEEEeccCCCCc
Q 005860 535 LQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIEKLIHLRYLRLVGLG-T---EELPETCCELLNLQVLEIEQCTSLK 610 (673)
Q Consensus 535 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~-i---~~LP~~i~~L~~L~~L~l~~c~~l~ 610 (673)
++..+.++++|+.|++++ +.+..+|..+..+++|++|+++++. . ...+..+..+++|+.|+++++. ..
T Consensus 212 l~~~~~~~~~L~~L~L~~-------~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~ 283 (592)
T 3ogk_B 212 LETIARNCRSLVSVKVGD-------FEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PN 283 (592)
T ss_dssp HHHHHHHCTTCCEEECSS-------CBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TT
T ss_pred HHHHHhhCCCCcEEeccC-------ccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hh
Confidence 333444455555555555 4444444445555555555554322 1 2233344455555555555532 45
Q ss_pred cccccccccccCCeeecccccccc--ccccCCCCCCCCcCCee
Q 005860 611 RLPLGIGKLVNLRHLTYDDSCLEF--IPKGIQRLTNLRTLSEF 651 (673)
Q Consensus 611 ~lP~~i~~L~~Lr~L~l~~~~l~~--lP~~i~~L~~L~~L~~~ 651 (673)
.+|..+..+++|++|++++|.+.. ++..++.+++|+.|...
T Consensus 284 ~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 284 EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 567667777788888877766432 22224566666666543
No 157
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.21 E-value=7.9e-08 Score=107.53 Aligned_cols=149 Identities=16% Similarity=0.110 Sum_probs=95.2
Q ss_pred cCceEEEEEEcCCCCcc-ccccc-cccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchh-----
Q 005860 491 QEKLRHSMLVLGYEASF-PISIF-KAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTN----- 563 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~-~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~----- 563 (673)
..+++++.+..+..... +..+. .+++|++|.+.++... ....++..+.++++|+.|++++ |.+.
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~-------~~i~~~~~~ 174 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF--STDGLAAIAATCRNLKELDLRE-------SDVDDVSGH 174 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE--EHHHHHHHHHHCTTCCEEECTT-------CEEECCCGG
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC--CHHHHHHHHHhCCCCCEEeCcC-------CccCCcchH
Confidence 34677888877654322 22232 5788999988877310 1123556667888999999988 5532
Q ss_pred hhccccccccccccceecCCC--C--cccchhhhcCCCccEEEeccCCCCccccccccccccCCeeecccc-------cc
Q 005860 564 KILKGIEKLIHLRYLRLVGLG--T--EELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDS-------CL 632 (673)
Q Consensus 564 ~lp~~i~~L~~Lr~L~L~~~~--i--~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~-------~l 632 (673)
.++.....+++|++|+|++|. + ..++.-+..+++|++|++++|..+..+|..+.++++|++|+++.+ .+
T Consensus 175 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 254 (594)
T 2p1m_B 175 WLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVY 254 (594)
T ss_dssp GGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHH
T ss_pred HHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhH
Confidence 234444567788999998886 2 223344456789999999988667778888888888888874332 23
Q ss_pred ccccccCCCCCCCCcC
Q 005860 633 EFIPKGIQRLTNLRTL 648 (673)
Q Consensus 633 ~~lP~~i~~L~~L~~L 648 (673)
..+|..++++++|+.|
T Consensus 255 ~~l~~~l~~~~~L~~L 270 (594)
T 2p1m_B 255 SGLSVALSGCKELRCL 270 (594)
T ss_dssp HHHHHHHHTCTTCCEE
T ss_pred HHHHHHHhcCCCcccc
Confidence 3344444455555444
No 158
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.20 E-value=5.8e-06 Score=86.47 Aligned_cols=157 Identities=13% Similarity=0.180 Sum_probs=86.9
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAI 248 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (673)
.+++|++..++.+...+.... ....+.|+|+.|+||||+|+.+.+.......+.. ..+.... ....+
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~~~----~~~~~ 82 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR------IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVCD----NCREI 82 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC------CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSSSH----HHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCcccH----HHHHH
Confidence 469999999999999886543 1346889999999999999998874221111100 0000000 00111
Q ss_pred HHHh-------hCC-CCCcCcHHHHHHHHHHH-hCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCChh-H
Q 005860 249 IEAL-------EGF-VPTVGELNSLLESIRAS-LVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKET-V 318 (673)
Q Consensus 249 ~~~l-------~~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v 318 (673)
.... ... .....+...+...+... ..+++.+||+||+..-+....+.+...+.....+..+|++|.... +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 162 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (373)
T ss_dssp HTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGS
T ss_pred hccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 1000 000 01112222222222111 235678999999965555556677777766556777777776432 1
Q ss_pred -HHhccccceeecCCCCcccc
Q 005860 319 -ARMMESIHVISIKELSEQEC 338 (673)
Q Consensus 319 -~~~~~~~~~~~l~~L~~~~~ 338 (673)
.........+++.+++.++.
T Consensus 163 ~~~l~sr~~~i~~~~l~~~~~ 183 (373)
T 1jr3_A 163 PVTILSRCLQFHLKALDVEQI 183 (373)
T ss_dssp CHHHHTTSEEEECCCCCHHHH
T ss_pred cHHHHhheeEeeCCCCCHHHH
Confidence 11112246788888887764
No 159
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.17 E-value=3.7e-07 Score=101.99 Aligned_cols=150 Identities=11% Similarity=-0.003 Sum_probs=83.4
Q ss_pred eEEEEEEcCCCC---ccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchh-----hh
Q 005860 494 LRHSMLVLGYEA---SFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTN-----KI 565 (673)
Q Consensus 494 ~r~l~l~~~~~~---~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~-----~l 565 (673)
++++.+..+... .++.....+++|++|.+.++.........++..+..++.|+.|++++ +.+. .+
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~-------n~~~~~~~~~l 212 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYM-------TEFAKISPKDL 212 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTT-------CCCSSCCHHHH
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeec-------cCCCccCHHHH
Confidence 666666554310 11111224566666666665421111112344455666666666666 4432 34
Q ss_pred ccccccccccccceecCCCCcccchhhhcCCCccEEEeccCCCC---ccccccccccccCCeeeccccccccccccCCCC
Q 005860 566 LKGIEKLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSL---KRLPLGIGKLVNLRHLTYDDSCLEFIPKGIQRL 642 (673)
Q Consensus 566 p~~i~~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l---~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~i~~L 642 (673)
+..+..+++|++|+|++|.+..+|..+.++++|+.|+++.+... ...+..+..+++|+.|++..+....+|..+..+
T Consensus 213 ~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~ 292 (592)
T 3ogk_B 213 ETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA 292 (592)
T ss_dssp HHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGG
T ss_pred HHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhc
Confidence 44555666777777777666667777777777777777653322 234445666677777776655555666666666
Q ss_pred CCCCcCCe
Q 005860 643 TNLRTLSE 650 (673)
Q Consensus 643 ~~L~~L~~ 650 (673)
++|+.|..
T Consensus 293 ~~L~~L~L 300 (592)
T 3ogk_B 293 AQIRKLDL 300 (592)
T ss_dssp GGCCEEEE
T ss_pred CCCcEEec
Confidence 66666543
No 160
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.13 E-value=5.3e-06 Score=84.64 Aligned_cols=143 Identities=15% Similarity=0.150 Sum_probs=85.4
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccC-CeEEEEEcCCcccHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYF-DKRMWVCVSDPFDELRIAKA 247 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~ 247 (673)
.+++|++..++.+.+++.... ...+.|+|++|+||||+|+.+.+... ...+ ...+.+..+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~-------~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~------ 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN-------IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGI------ 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC-------CCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCT------
T ss_pred HHHhCCHHHHHHHHHHHhCCC-------CCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccCh------
Confidence 469999999999998886543 23389999999999999999887411 1111 11233444332111
Q ss_pred HHHHhhCCCCCcCcHHHHHHHHHHH--h-CCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCChh-HHH-hc
Q 005860 248 IIEALEGFVPTVGELNSLLESIRAS--L-VGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKET-VAR-MM 322 (673)
Q Consensus 248 i~~~l~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~-~~ 322 (673)
.........+... + .+++.+||+|++..-.....+.+...+.....+.++|+||.... +.. ..
T Consensus 83 ------------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 150 (319)
T 2chq_A 83 ------------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ 150 (319)
T ss_dssp ------------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHH
T ss_pred ------------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHH
Confidence 1111111111111 1 25688999999955444455667666666566788888876543 111 11
Q ss_pred cccceeecCCCCccc
Q 005860 323 ESIHVISIKELSEQE 337 (673)
Q Consensus 323 ~~~~~~~l~~L~~~~ 337 (673)
.....+++.+++.++
T Consensus 151 sr~~~i~~~~~~~~~ 165 (319)
T 2chq_A 151 SRCAVFRFKPVPKEA 165 (319)
T ss_dssp TTCEEEECCCCCHHH
T ss_pred hhCeEEEecCCCHHH
Confidence 223467788887665
No 161
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.04 E-value=5.5e-06 Score=76.93 Aligned_cols=120 Identities=18% Similarity=0.232 Sum_probs=64.3
Q ss_pred hhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhC
Q 005860 175 DEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEG 254 (673)
Q Consensus 175 ~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 254 (673)
...++.+.+++..-.. .....+.|+|++|+||||||+.+++.......+ .++++ +..++...+......
T Consensus 20 ~~~~~~~~~~~~~~~~----~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~------~~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNP----EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFF------DTKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHSCCG----GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEE------EHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc----cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEE------EHHHHHHHHHHHhcC
Confidence 3444555554433221 224689999999999999999999853212222 23444 344555555544433
Q ss_pred CCCCcCcHHHHHHHHHHHhCCCeEEEEEcCCCCCCccchh--hhhhhccC-CCCCeEEEEEcCC
Q 005860 255 FVPTVGELNSLLESIRASLVGKKFLLILDDMWTDDYSKWE--PFHYCLKN-GVRGSKILVTTRK 315 (673)
Q Consensus 255 ~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~--~l~~~l~~-~~~gs~iivTtr~ 315 (673)
.... ..... +. +.-+|||||++......|. .+...+.. ...|..||+||..
T Consensus 89 ~~~~-----~~~~~----~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 89 GKDT-----KFLKT----VL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp TCCS-----HHHHH----HH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred chHH-----HHHHH----hc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 2211 11222 22 4568999999743333333 23332322 1246788888874
No 162
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.99 E-value=6.9e-06 Score=76.32 Aligned_cols=45 Identities=22% Similarity=0.221 Sum_probs=38.0
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..++||+.+++.+.+.+.... .+.+.|+|++|+||||||+.+.+.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~-------~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRT-------KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS-------SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCC-------CCceEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999986533 345689999999999999998874
No 163
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.96 E-value=2.7e-06 Score=88.83 Aligned_cols=135 Identities=16% Similarity=0.078 Sum_probs=95.7
Q ss_pred CceEEEEEEcCCCCcc-cccc-ccccccchhhhccchhhhhhhhhHHHHh-hhCCccceeeeccccccccccchhh----
Q 005860 492 EKLRHSMLVLGYEASF-PISI-FKAKNLRSLFINNTLIQVSLTHVLQSLF-DQLKCLRALRIATLMNTWDVNSTNK---- 564 (673)
Q Consensus 492 ~~~r~l~l~~~~~~~~-~~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~~---- 564 (673)
..++.+.+..+..... ...+ ..+++|+.|++++|.........+...+ .....|+.|+|++ |.+..
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~-------n~l~~~~~~ 173 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSN-------NPLTAAGVA 173 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCS-------SCCHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCC-------CCCChHHHH
Confidence 4677888877665321 1122 2357889999998875333333333334 3467899999999 77543
Q ss_pred -hccccccccccccceecCCCCcc-----cchhhhcCCCccEEEeccCCCCc-----cccccccccccCCeeeccccccc
Q 005860 565 -ILKGIEKLIHLRYLRLVGLGTEE-----LPETCCELLNLQVLEIEQCTSLK-----RLPLGIGKLVNLRHLTYDDSCLE 633 (673)
Q Consensus 565 -lp~~i~~L~~Lr~L~L~~~~i~~-----LP~~i~~L~~L~~L~l~~c~~l~-----~lP~~i~~L~~Lr~L~l~~~~l~ 633 (673)
++..+..+++|++|+|++|.+.. ++..+...++|++|+|++|. +. .++..+...++|++|++++|.+.
T Consensus 174 ~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 174 VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 56666788899999999998753 46677788899999999986 64 35556667789999999999876
Q ss_pred c
Q 005860 634 F 634 (673)
Q Consensus 634 ~ 634 (673)
.
T Consensus 253 ~ 253 (372)
T 3un9_A 253 S 253 (372)
T ss_dssp H
T ss_pred H
Confidence 4
No 164
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.89 E-value=2.8e-05 Score=82.94 Aligned_cols=102 Identities=19% Similarity=0.207 Sum_probs=60.2
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCC--eEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFD--KRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLV 274 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 274 (673)
...+.|+|++|+||||||+.+++. ....|. .+++++. ..+..++...+.... ...+...+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~------~~~~~~~~~~~~~~~---------~~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEGK---------LNEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEH------HHHHHHHHHHHHTTC---------HHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHccc---------HHHHHHHhc
Confidence 457899999999999999999985 333332 2455543 334455555544321 123344444
Q ss_pred CCeEEEEEcCCCCCCc--cchhhhhhhccC-CCCCeEEEEEcCC
Q 005860 275 GKKFLLILDDMWTDDY--SKWEPFHYCLKN-GVRGSKILVTTRK 315 (673)
Q Consensus 275 ~kr~LlVLDdvw~~~~--~~~~~l~~~l~~-~~~gs~iivTtr~ 315 (673)
.+.-+|+|||+..-.. ...+.+...+.. ...|..||+||.+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4667999999954322 122333333321 2356788888875
No 165
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.89 E-value=1.3e-05 Score=71.49 Aligned_cols=113 Identities=16% Similarity=0.063 Sum_probs=65.1
Q ss_pred cceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccc-cccCCeEEEEEcCCcccHHHHHHHH
Q 005860 170 EIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDV-FEYFDKRMWVCVSDPFDELRIAKAI 248 (673)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~~~~~i 248 (673)
+++|+...++++.+.+..-.. . ..-|.|+|..|+|||++|+.+++...- ...| + +..+...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~-~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~---v-~~~~~~~~~------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----T-DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEF---V-YRELTPDNA------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----C-CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCC---E-EEECCTTTS-------
T ss_pred CceeCCHHHHHHHHHHHHHhC----C-CCCEEEECCCCCCHHHHHHHHHHhCCccCCCE---E-EECCCCCcc-------
Confidence 578999999999887744221 1 123689999999999999999985211 1222 3 554432211
Q ss_pred HHHhhCCCCCcCcHHHHHHHHHHHhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCC
Q 005860 249 IEALEGFVPTVGELNSLLESIRASLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRK 315 (673)
Q Consensus 249 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 315 (673)
... ...+... ..-.|+||++..-.......+...+.......+||.||..
T Consensus 66 -----------~~~---~~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 -----------PQL---NDFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp -----------SCH---HHHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred -----------hhh---hcHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 011 1111111 2246899999654444445555555444445577777764
No 166
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.88 E-value=1.2e-06 Score=91.51 Aligned_cols=146 Identities=15% Similarity=0.096 Sum_probs=98.5
Q ss_pred CceEEEEEEcCCCCcc-----ccccc-cccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhh-
Q 005860 492 EKLRHSMLVLGYEASF-----PISIF-KAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNK- 564 (673)
Q Consensus 492 ~~~r~l~l~~~~~~~~-----~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~- 564 (673)
..++.+.+..+..... ...+. ..++|++|++.+|.... .....+...+++|+.|+|++ |.+..
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~---~~~~~l~~~L~~L~~L~Ls~-------n~l~~~ 141 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP---AGLRTLLPVFLRARKLGLQL-------NSLGPE 141 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH---HHHHHTHHHHHTEEEEECCS-------SCCCHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH---HHHHHHHHHHHhccHhhcCC-------CCCCHH
Confidence 3466677766654321 11122 23689999999987421 22334445567899999999 77543
Q ss_pred ----hcccc-ccccccccceecCCCCcc-----cchhhhcCCCccEEEeccCCCCc-----cccccccccccCCeeeccc
Q 005860 565 ----ILKGI-EKLIHLRYLRLVGLGTEE-----LPETCCELLNLQVLEIEQCTSLK-----RLPLGIGKLVNLRHLTYDD 629 (673)
Q Consensus 565 ----lp~~i-~~L~~Lr~L~L~~~~i~~-----LP~~i~~L~~L~~L~l~~c~~l~-----~lP~~i~~L~~Lr~L~l~~ 629 (673)
+...+ ....+|++|+|++|.+.. ++..+..+++|++|+|++|. +. .++..+...++|++|++++
T Consensus 142 ~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~ 220 (372)
T 3un9_A 142 ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAY 220 (372)
T ss_dssp HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCC
Confidence 22222 235789999999999754 66777889999999999987 64 3566778888999999999
Q ss_pred ccccc-----ccccCCCCCCCCcC
Q 005860 630 SCLEF-----IPKGIQRLTNLRTL 648 (673)
Q Consensus 630 ~~l~~-----lP~~i~~L~~L~~L 648 (673)
|.+.. ++..+...++|++|
T Consensus 221 N~i~~~g~~~l~~~L~~~~~L~~L 244 (372)
T 3un9_A 221 NGAGDTAALALARAAREHPSLELL 244 (372)
T ss_dssp SCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred CCCCHHHHHHHHHHHHhCCCCCEE
Confidence 98864 33334444555554
No 167
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.85 E-value=9.4e-06 Score=83.35 Aligned_cols=97 Identities=16% Similarity=0.148 Sum_probs=71.6
Q ss_pred ccccccceecCCCCcccch-hhhcCCCccEEEeccCCCCccccc-cccccccCC-eeecccccccccccc-CCCCCCCCc
Q 005860 572 LIHLRYLRLVGLGTEELPE-TCCELLNLQVLEIEQCTSLKRLPL-GIGKLVNLR-HLTYDDSCLEFIPKG-IQRLTNLRT 647 (673)
Q Consensus 572 L~~Lr~L~L~~~~i~~LP~-~i~~L~~L~~L~l~~c~~l~~lP~-~i~~L~~Lr-~L~l~~~~l~~lP~~-i~~L~~L~~ 647 (673)
+.+|++|+|++|.++.+|+ .+.++.+|+.|++.++ +..+|. .|.++.+|+ .|.+.. .+..++.+ +.++++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 5789999999888989985 5788899999999873 888875 578999999 998877 67777644 777888887
Q ss_pred CCe--eEEccCCccCCCccccCCCCC
Q 005860 648 LSE--FVVVRGGSKYGGKACNLEGLR 671 (673)
Q Consensus 648 L~~--~~~~~~~~~~~~~~~~l~~L~ 671 (673)
|.. -.+..-....+..+.+|+.|.
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEeCCCccCccchhhhcCCcchhhhc
Confidence 753 122222333467777887664
No 168
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.83 E-value=6.8e-06 Score=80.01 Aligned_cols=60 Identities=20% Similarity=0.150 Sum_probs=38.8
Q ss_pred Ccceech---hhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCC
Q 005860 169 SEIRGRD---EEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSD 237 (673)
Q Consensus 169 ~~~vGr~---~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 237 (673)
++++|.+ ..++.+..++... ..+.+.|+|++|+||||||+.+++. .......+.|+.+++
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD-------GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGI 90 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC-------SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGG
T ss_pred hhccCCCCCHHHHHHHHHHHhCC-------CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHH
Confidence 4577633 4455555555432 2457889999999999999999885 322334566776644
No 169
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.82 E-value=6.5e-05 Score=80.01 Aligned_cols=138 Identities=19% Similarity=0.243 Sum_probs=75.6
Q ss_pred CcceechhhH---HHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHH
Q 005860 169 SEIRGRDEEK---SSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIA 245 (673)
Q Consensus 169 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 245 (673)
++++|.+..+ ..+...+.... ...+.|+|++|+||||||+.+.+. ....| ..+.... .....+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~-------~~~vLL~GppGtGKTtlAr~ia~~--~~~~f---~~l~a~~-~~~~~i- 91 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGH-------LHSMILWGPPGTGKTTLAEVIARY--ANADV---ERISAVT-SGVKEI- 91 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTC-------CCEEEEECSTTSSHHHHHHHHHHH--TTCEE---EEEETTT-CCHHHH-
T ss_pred HHhCCcHHHHhchHHHHHHHHcCC-------CcEEEEECCCCCcHHHHHHHHHHH--hCCCe---EEEEecc-CCHHHH-
Confidence 5789998887 66777665443 467899999999999999999985 22222 1222221 122211
Q ss_pred HHHHHHhhCCCCCcCcHHHHHHHHHHHhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCChh--H-HHhc
Q 005860 246 KAIIEALEGFVPTVGELNSLLESIRASLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKET--V-ARMM 322 (673)
Q Consensus 246 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~--v-~~~~ 322 (673)
+.++.. .......+++.+|+||++..-...+.+.+...+..+ .-.-|..||.+.. + ....
T Consensus 92 r~~~~~----------------a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~-~v~lI~att~n~~~~l~~aL~ 154 (447)
T 3pvs_A 92 REAIER----------------ARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG-TITFIGATTENPSFELNSALL 154 (447)
T ss_dssp HHHHHH----------------HHHHHHTTCCEEEEEETTTCC------CCHHHHHTT-SCEEEEEESSCGGGSSCHHHH
T ss_pred HHHHHH----------------HHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC-ceEEEecCCCCcccccCHHHh
Confidence 111111 011112567889999999665555566666666542 2222333555532 1 1112
Q ss_pred cccceeecCCCCccc
Q 005860 323 ESIHVISIKELSEQE 337 (673)
Q Consensus 323 ~~~~~~~l~~L~~~~ 337 (673)
.-..++.+++++.++
T Consensus 155 sR~~v~~l~~l~~ed 169 (447)
T 3pvs_A 155 SRARVYLLKSLSTED 169 (447)
T ss_dssp TTEEEEECCCCCHHH
T ss_pred CceeEEeeCCcCHHH
Confidence 224577788887665
No 170
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.80 E-value=6.5e-05 Score=75.23 Aligned_cols=53 Identities=23% Similarity=0.263 Sum_probs=38.7
Q ss_pred CCcceechhhHHHHHHHhccCCcc-c-----ccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 168 VSEIRGRDEEKSSLKSKLLCESSE-E-----IINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~-~-----~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.++++|.+..+++|.+.+...... . +.....-+.|+|++|+||||||+.+++.
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999998887432000 0 0012345899999999999999999884
No 171
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.77 E-value=2.4e-05 Score=74.01 Aligned_cols=125 Identities=18% Similarity=0.195 Sum_probs=64.4
Q ss_pred cceech----hhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHH
Q 005860 170 EIRGRD----EEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIA 245 (673)
Q Consensus 170 ~~vGr~----~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 245 (673)
+|++.+ ..++.+..++..... ......+.|+|++|+||||||+.+++. .......++|++++ .+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~ 94 (202)
T 2w58_A 26 DVDLNDDGRIKAIRFAERFVAEYEP---GKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELF 94 (202)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHCCS---SCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHH
T ss_pred hccCCChhHHHHHHHHHHHHHHhhh---ccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHH
Confidence 455543 344455555543321 011267889999999999999999985 33334456677543 344
Q ss_pred HHHHHHhhCCCCCcCcHHHHHHHHHHHhCCCeEEEEEcCCCCCCccchhh--hhh-hccCC-CCCeEEEEEcCC
Q 005860 246 KAIIEALEGFVPTVGELNSLLESIRASLVGKKFLLILDDMWTDDYSKWEP--FHY-CLKNG-VRGSKILVTTRK 315 (673)
Q Consensus 246 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~--l~~-~l~~~-~~gs~iivTtr~ 315 (673)
..+...... .........+. .. -+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 95 ~~~~~~~~~-----~~~~~~~~~~~----~~-~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 95 RELKHSLQD-----QTMNEKLDYIK----KV-PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp HHHHHC--------CCCHHHHHHHH----HS-SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHhcc-----chHHHHHHHhc----CC-CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 444332211 11222222222 22 389999996544334322 222 22211 235568888774
No 172
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.74 E-value=7.3e-05 Score=75.80 Aligned_cols=51 Identities=22% Similarity=0.143 Sum_probs=35.3
Q ss_pred cceechhhHHHHHHHhccCCcc--------cccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 170 EIRGRDEEKSSLKSKLLCESSE--------EIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~--------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+++|.+..++.+.+++.....+ ........+.|+|++|+|||++|+.+.+.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 5889988888887665321000 00123456899999999999999988774
No 173
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.74 E-value=5.1e-05 Score=78.50 Aligned_cols=156 Identities=12% Similarity=0.105 Sum_probs=84.3
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCC-eEEEEEcCCcccHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFD-KRMWVCVSDPFDELRIAKA 247 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~ 247 (673)
.+++|+++.++.+..++.... ...+.|+|++|+||||+|+.+.+.......+. ..+.+..+.......+ .+
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~-------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~ 108 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN-------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-RE 108 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT-------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TT
T ss_pred HHhhCCHHHHHHHHHHHhcCC-------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HH
Confidence 579999999999999986553 22388999999999999999988521111121 2333444432233222 22
Q ss_pred HHHHhhCC-CCCcCcHHHHHHHHHHHhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCChh-HHHh-ccc
Q 005860 248 IIEALEGF-VPTVGELNSLLESIRASLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKET-VARM-MES 324 (673)
Q Consensus 248 i~~~l~~~-~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~ 324 (673)
.+..+... ....... .....-.+++-+|++|++..-.....+.+...+.......++|++|.... +... ...
T Consensus 109 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR 183 (353)
T 1sxj_D 109 KVKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ 183 (353)
T ss_dssp HHHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc
Confidence 22222111 0000000 00111124567999999854444445556665655555677777775432 1111 111
Q ss_pred cceeecCCCCccc
Q 005860 325 IHVISIKELSEQE 337 (673)
Q Consensus 325 ~~~~~l~~L~~~~ 337 (673)
...+.+.+++.++
T Consensus 184 ~~~i~~~~~~~~~ 196 (353)
T 1sxj_D 184 CSKFRFKALDASN 196 (353)
T ss_dssp SEEEECCCCCHHH
T ss_pred CceEEeCCCCHHH
Confidence 2356677766554
No 174
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.74 E-value=2.8e-06 Score=94.91 Aligned_cols=106 Identities=15% Similarity=0.112 Sum_probs=57.5
Q ss_pred hhhCCccceeeecccccccccc-chhhhccccccccccccceecCC-------CCcccchhhhcCCCccEE-EeccCCCC
Q 005860 539 FDQLKCLRALRIATLMNTWDVN-STNKILKGIEKLIHLRYLRLVGL-------GTEELPETCCELLNLQVL-EIEQCTSL 609 (673)
Q Consensus 539 ~~~l~~L~~L~L~~~~~~~~~~-~~~~lp~~i~~L~~Lr~L~L~~~-------~i~~LP~~i~~L~~L~~L-~l~~c~~l 609 (673)
+..+++|+.|++++ + .+..+|..+..+++|++|++.++ .+..+|..+.++++|+.| .+.+.. .
T Consensus 207 ~~~~~~L~~L~L~~-------~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~ 278 (594)
T 2p1m_B 207 VTRCPNLKSLKLNR-------AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV-P 278 (594)
T ss_dssp HHHCTTCCEEECCT-------TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC-G
T ss_pred HHhCCCCcEEecCC-------CCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc-h
Confidence 33445555555555 3 23334444555555555553322 233444455555555555 333322 3
Q ss_pred ccccccccccccCCeeecccccccc--ccccCCCCCCCCcCCeeE
Q 005860 610 KRLPLGIGKLVNLRHLTYDDSCLEF--IPKGIQRLTNLRTLSEFV 652 (673)
Q Consensus 610 ~~lP~~i~~L~~Lr~L~l~~~~l~~--lP~~i~~L~~L~~L~~~~ 652 (673)
..+|..+..+++|++|++++|.+.. ++.-+.++++|++|....
T Consensus 279 ~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~ 323 (594)
T 2p1m_B 279 AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD 323 (594)
T ss_dssp GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEG
T ss_pred hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcC
Confidence 4466556678999999988877553 223355677777776543
No 175
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.73 E-value=4.2e-05 Score=79.27 Aligned_cols=156 Identities=12% Similarity=0.124 Sum_probs=79.3
Q ss_pred CcceechhhHHHHHHHh-ccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCc---ccc-ccCCe--------------
Q 005860 169 SEIRGRDEEKSSLKSKL-LCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDS---DVF-EYFDK-------------- 229 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~-~~F~~-------------- 229 (673)
.+++|.+..++.+..++ .... ...+.|+|+.|+||||+|+.+.+.. ... -.++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-------~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~ 86 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-------LPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELN 86 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-------CCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------C
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-------CCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceee
Confidence 56899999999998887 4332 2228999999999999998876621 100 00110
Q ss_pred ------EEEEEcCCcc-cHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCCeEEEEEcCCCCCCccchhhhhhhccC
Q 005860 230 ------RMWVCVSDPF-DELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGKKFLLILDDMWTDDYSKWEPFHYCLKN 302 (673)
Q Consensus 230 ------~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~ 302 (673)
.+.+..+... ......+++++.+.....- . ... .+ ..+.+++-++|||++..-+....+.+...+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~---~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 87 VVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV-D---FQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEK 160 (354)
T ss_dssp CEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHH
T ss_pred eecccceEEecHhhcCCcchHHHHHHHHHHHHhccc-c---ccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHh
Confidence 1111111100 0000122233322211000 0 000 00 00234677999999966554455566666654
Q ss_pred CCCCeEEEEEcCChh-HHH-hccccceeecCCCCccc
Q 005860 303 GVRGSKILVTTRKET-VAR-MMESIHVISIKELSEQE 337 (673)
Q Consensus 303 ~~~gs~iivTtr~~~-v~~-~~~~~~~~~l~~L~~~~ 337 (673)
...+..+|++|.+.. +.. ...-...+++++++.++
T Consensus 161 ~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~ 197 (354)
T 1sxj_E 161 YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSE 197 (354)
T ss_dssp STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHH
T ss_pred hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHH
Confidence 455778888877532 211 11223567778777665
No 176
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.73 E-value=5.1e-05 Score=77.63 Aligned_cols=139 Identities=17% Similarity=0.168 Sum_probs=82.2
Q ss_pred CCcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHH
Q 005860 168 VSEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKA 247 (673)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 247 (673)
-++++|.+..++.+.+++.... ...++.+.|++|+||||+|+.+.+.. . ...+.++.+.. ... ..+.
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~------~~~~~L~~G~~G~GKT~la~~la~~l--~---~~~~~i~~~~~-~~~-~i~~ 91 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGK------IPHIILHSPSPGTGKTTVAKALCHDV--N---ADMMFVNGSDC-KID-FVRG 91 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTC------CCSEEEECSSTTSSHHHHHHHHHHHT--T---EEEEEEETTTC-CHH-HHHT
T ss_pred HHHHhCcHHHHHHHHHHHHcCC------CCeEEEeeCcCCCCHHHHHHHHHHHh--C---CCEEEEccccc-CHH-HHHH
Confidence 3579999999999999987543 23577888999999999999998842 1 23445554442 222 2222
Q ss_pred HHHHhhCCCCCcCcHHHHHHHHHHHhCCCeEEEEEcCCCCCC-ccchhhhhhhccCCCCCeEEEEEcCChh-----HHHh
Q 005860 248 IIEALEGFVPTVGELNSLLESIRASLVGKKFLLILDDMWTDD-YSKWEPFHYCLKNGVRGSKILVTTRKET-----VARM 321 (673)
Q Consensus 248 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~-~~~~~~l~~~l~~~~~gs~iivTtr~~~-----v~~~ 321 (673)
++....... ...+++.+|++|++..-. ....+.+...+.....+.++|+||.... +...
T Consensus 92 ~~~~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR 156 (324)
T 3u61_B 92 PLTNFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR 156 (324)
T ss_dssp HHHHHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH
T ss_pred HHHHHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh
Confidence 221111000 012478899999995433 3344555555544344567888877543 1111
Q ss_pred ccccceeecCCCCccc
Q 005860 322 MESIHVISIKELSEQE 337 (673)
Q Consensus 322 ~~~~~~~~l~~L~~~~ 337 (673)
...+++++++.++
T Consensus 157 ---~~~i~~~~~~~~e 169 (324)
T 3u61_B 157 ---CRVITFGQPTDED 169 (324)
T ss_dssp ---SEEEECCCCCHHH
T ss_pred ---CcEEEeCCCCHHH
Confidence 2356666665443
No 177
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.72 E-value=1.8e-05 Score=70.37 Aligned_cols=47 Identities=11% Similarity=0.174 Sum_probs=33.4
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-.++|++..++++.+.+..-.. . ..-|.|+|..|+|||++|+.+++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~----~-~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAK----R-TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHT----C-SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhC----C-CCcEEEECCCCccHHHHHHHHHHh
Confidence 3578999998888887753221 1 123779999999999999999985
No 178
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.70 E-value=2.4e-05 Score=72.92 Aligned_cols=115 Identities=16% Similarity=0.097 Sum_probs=77.9
Q ss_pred cccccccchhhhccc-hhhhhhhhhHHHHhhhCCccceeeeccccccccccchh-----hhccccccccccccceecCCC
Q 005860 511 IFKAKNLRSLFINNT-LIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTN-----KILKGIEKLIHLRYLRLVGLG 584 (673)
Q Consensus 511 ~~~~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~-----~lp~~i~~L~~Lr~L~L~~~~ 584 (673)
+...++|++|.+.++ .....-...+...+...+.|+.|+|++ +.+. .+...+.....|++|+|++|.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~-------n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVG-------TRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTT-------SCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcC-------CCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 345677888888877 543333344555666778888888888 6543 244555666788888888888
Q ss_pred Ccc-----cchhhhcCCCccEEEe--ccCCCCcc-----ccccccccccCCeeeccccccc
Q 005860 585 TEE-----LPETCCELLNLQVLEI--EQCTSLKR-----LPLGIGKLVNLRHLTYDDSCLE 633 (673)
Q Consensus 585 i~~-----LP~~i~~L~~L~~L~l--~~c~~l~~-----lP~~i~~L~~Lr~L~l~~~~l~ 633 (673)
+.. +...+...++|++|+| ++|. +.. +...+...++|++|+++.|.+.
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 654 5666777788888888 6554 532 4445566678888888777653
No 179
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.69 E-value=3.3e-05 Score=75.89 Aligned_cols=84 Identities=15% Similarity=0.150 Sum_probs=53.1
Q ss_pred HHHHhhhCCccceeeeccccccccccchhh---hccccccccccccceecCCCCcccchhhhcCC--CccEEEeccCCCC
Q 005860 535 LQSLFDQLKCLRALRIATLMNTWDVNSTNK---ILKGIEKLIHLRYLRLVGLGTEELPETCCELL--NLQVLEIEQCTSL 609 (673)
Q Consensus 535 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~---lp~~i~~L~~Lr~L~L~~~~i~~LP~~i~~L~--~L~~L~l~~c~~l 609 (673)
++....+++.|+.|+|++ |.+.. +|..+..+++|++|+|++|.+..+ ..+..|. +|++|+|++++--
T Consensus 162 l~i~~~~l~~L~~L~Ls~-------N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 162 LRIIEENIPELLSLNLSN-------NRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHHHHHHCTTCCEEECTT-------SCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTG
T ss_pred HHHHHhhCCCCCEEECCC-------CCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCc
Confidence 334445677788888887 76554 345566777788888877777766 3355555 7777777776622
Q ss_pred ccccc-------cccccccCCeee
Q 005860 610 KRLPL-------GIGKLVNLRHLT 626 (673)
Q Consensus 610 ~~lP~-------~i~~L~~Lr~L~ 626 (673)
..+|. .+..+++|+.||
T Consensus 234 ~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 234 DTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cccCcchhHHHHHHHHCcccCeEC
Confidence 33442 245666666666
No 180
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.61 E-value=0.00021 Score=70.88 Aligned_cols=48 Identities=15% Similarity=0.096 Sum_probs=34.7
Q ss_pred CcceechhhHHHHHH-------HhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKS-------KLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..++|....+++++. .+.... ......+.|+|++|+|||+||+.+++.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~----~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSD----RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCS----SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccC----CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 357788777666665 232111 134678999999999999999999984
No 181
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.59 E-value=0.0001 Score=76.71 Aligned_cols=47 Identities=17% Similarity=0.154 Sum_probs=35.7
Q ss_pred CcceechhhHHH---HHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSS---LKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
++++|++..++. +...+.... ...+.+.|+|++|+|||++|+.+.+.
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~-----~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK-----IAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC-----CTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC-----CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 579999988766 444444333 22357899999999999999999985
No 182
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.59 E-value=0.00015 Score=74.16 Aligned_cols=122 Identities=21% Similarity=0.199 Sum_probs=63.2
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGK 276 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 276 (673)
...+.|+|++|+||||||+.+++.. ...-...++++. ..+...+...+... ... .+...+. +
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~--~~~~~~~~~i~~------~~~~~~~~~~~~~~-----~~~----~~~~~~~-~ 98 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA--KKRGYRVIYSSA------DDFAQAMVEHLKKG-----TIN----EFRNMYK-S 98 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH--HHTTCCEEEEEH------HHHHHHHHHHHHHT-----CHH----HHHHHHH-T
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--HHCCCEEEEEEH------HHHHHHHHHHHHcC-----cHH----HHHHHhc-C
Confidence 4568899999999999999999852 111123455543 33344444443221 111 1222222 3
Q ss_pred eEEEEEcCCCCCCc--cchhhhhhhccC-CCCCeEEEEEcCCh---------hHHHhccccceeecCCCCccc
Q 005860 277 KFLLILDDMWTDDY--SKWEPFHYCLKN-GVRGSKILVTTRKE---------TVARMMESIHVISIKELSEQE 337 (673)
Q Consensus 277 r~LlVLDdvw~~~~--~~~~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~ 337 (673)
..+|+|||+..-.. ...+.+...+.. ...|..||+||... .+...+.....+++++ +.++
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e 170 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKT 170 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHH
Confidence 56999999944221 112233333321 13455788877532 1222222234567776 5544
No 183
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.55 E-value=0.00011 Score=75.38 Aligned_cols=101 Identities=14% Similarity=0.073 Sum_probs=86.3
Q ss_pred hhhCCccceeeeccccccccccchhhhcc-ccccccccccceecCCCCcccc-hhhhcCCCcc-EEEeccCCCCcccc-c
Q 005860 539 FDQLKCLRALRIATLMNTWDVNSTNKILK-GIEKLIHLRYLRLVGLGTEELP-ETCCELLNLQ-VLEIEQCTSLKRLP-L 614 (673)
Q Consensus 539 ~~~l~~L~~L~L~~~~~~~~~~~~~~lp~-~i~~L~~Lr~L~L~~~~i~~LP-~~i~~L~~L~-~L~l~~c~~l~~lP-~ 614 (673)
...+..|+.|++++ +.+..+|+ .+..+.+|+.|+|..+ ++.+| ..+.++.+|+ .|++.+ ++..++ .
T Consensus 222 ~~~~~~L~~l~L~~-------n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~ 291 (329)
T 3sb4_A 222 RDYMPNLVSLDISK-------TNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFG 291 (329)
T ss_dssp HHHCTTCCEEECTT-------BCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTT
T ss_pred HHhcCCCeEEECCC-------CCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchh
Confidence 34588999999999 88888876 4788999999999987 88887 5688999999 999987 488887 5
Q ss_pred cccccccCCeeecccccccccccc-CCCCCCCCcCC
Q 005860 615 GIGKLVNLRHLTYDDSCLEFIPKG-IQRLTNLRTLS 649 (673)
Q Consensus 615 ~i~~L~~Lr~L~l~~~~l~~lP~~-i~~L~~L~~L~ 649 (673)
.|.++.+|+.|++..+.+..++.. +.++++|+.+.
T Consensus 292 aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 292 AFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred hhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 789999999999999999999875 78888888763
No 184
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.54 E-value=2e-05 Score=77.46 Aligned_cols=84 Identities=21% Similarity=0.178 Sum_probs=66.7
Q ss_pred ccccccccceecCCCCccc---chhhhcCCCccEEEeccCCCCccccccccccc--cCCeeecccccccc-cc-------
Q 005860 570 EKLIHLRYLRLVGLGTEEL---PETCCELLNLQVLEIEQCTSLKRLPLGIGKLV--NLRHLTYDDSCLEF-IP------- 636 (673)
Q Consensus 570 ~~L~~Lr~L~L~~~~i~~L---P~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~--~Lr~L~l~~~~l~~-lP------- 636 (673)
.++++|+.|+|++|.+..+ |..+..+++|++|+|+++. +..++ ++..+. +|+.|++++|.+.. +|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCch-hhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 5678999999999997765 4677899999999999865 87773 566666 89999999998863 43
Q ss_pred ccCCCCCCCCcCCeeEEcc
Q 005860 637 KGIQRLTNLRTLSEFVVVR 655 (673)
Q Consensus 637 ~~i~~L~~L~~L~~~~~~~ 655 (673)
.-+..+++|+.|++..+..
T Consensus 245 ~il~~~P~L~~LDg~~v~p 263 (267)
T 3rw6_A 245 AIRERFPKLLRLDGHELPP 263 (267)
T ss_dssp HHHHHCTTCCEESSCBCCC
T ss_pred HHHHHCcccCeECCcCCCC
Confidence 2357789999998876654
No 185
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.53 E-value=3.9e-05 Score=68.57 Aligned_cols=38 Identities=21% Similarity=0.170 Sum_probs=27.4
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSD 237 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 237 (673)
..++|+|..|+|||||++.+++.... ..+ .++++...+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-~~~~~~~~~ 74 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALE-AGK-NAAYIDAAS 74 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHT-TTC-CEEEEETTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHh-cCC-cEEEEcHHH
Confidence 47899999999999999999985322 111 256776544
No 186
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.52 E-value=0.00028 Score=71.07 Aligned_cols=140 Identities=14% Similarity=0.006 Sum_probs=83.9
Q ss_pred echhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCcc-cc-ccCCeEEEEEcCC-cccHHHHHHHHH
Q 005860 173 GRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSD-VF-EYFDKRMWVCVSD-PFDELRIAKAII 249 (673)
Q Consensus 173 Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~-~~F~~~~wv~vs~-~~~~~~~~~~i~ 249 (673)
|-++.++.+...+..+. ...+.++|+.|+||||+|+.+.+... .. .+.+ ..++..++ ...+..+ ++++
T Consensus 1 g~~~~~~~L~~~i~~~~-------~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li 71 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE-------GISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIK 71 (305)
T ss_dssp ---CHHHHHHHHHHTCS-------SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHH
T ss_pred ChHHHHHHHHHHHHCCC-------CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHH
Confidence 33455666777664432 56889999999999999999876310 11 1223 34444332 2233222 2333
Q ss_pred HHhhCCCCCcCcHHHHHHHHHHHhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCCh-hHHHhcccccee
Q 005860 250 EALEGFVPTVGELNSLLESIRASLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKE-TVARMMESIHVI 328 (673)
Q Consensus 250 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~ 328 (673)
+.+.... ..+++-++|+|++..-.....+.+...+......+.+|++|.+. .+...+.+. .+
T Consensus 72 ~~~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~ 134 (305)
T 2gno_A 72 DFLNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VF 134 (305)
T ss_dssp HHHTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SE
T ss_pred HHHhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eE
Confidence 3332211 12456789999996655566777888887766778888777543 343333445 88
Q ss_pred ecCCCCcccc
Q 005860 329 SIKELSEQEC 338 (673)
Q Consensus 329 ~l~~L~~~~~ 338 (673)
+++++++++.
T Consensus 135 ~f~~l~~~~i 144 (305)
T 2gno_A 135 RVVVNVPKEF 144 (305)
T ss_dssp EEECCCCHHH
T ss_pred eCCCCCHHHH
Confidence 8888887763
No 187
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.52 E-value=0.0001 Score=80.39 Aligned_cols=160 Identities=16% Similarity=0.150 Sum_probs=82.4
Q ss_pred CcceechhhHHHHHHHhccCCcc----------cccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCc
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSE----------EIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDP 238 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~----------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 238 (673)
.+++|++..++++..++...... .+....+.+.|+|++|+||||+|+.+.+.. .+ ..+.+..+..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCCCc
Confidence 57999999999999998651100 000134689999999999999999999852 12 2345555554
Q ss_pred ccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCCeEEEEEcCCCCCCcc---chhhhhhhccCCCCCeEEEEEcCC
Q 005860 239 FDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGKKFLLILDDMWTDDYS---KWEPFHYCLKNGVRGSKILVTTRK 315 (673)
Q Consensus 239 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~---~~~~l~~~l~~~~~gs~iivTtr~ 315 (673)
.... +....+........-..-...... .....+++.+|++|++..-... .+..+...+... +..||+++.+
T Consensus 114 ~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~ 188 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNE 188 (516)
T ss_dssp CCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESC
T ss_pred chHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcC
Confidence 4433 222222221111000000000000 0012367889999999432211 123343333322 2345555543
Q ss_pred hh---HHHhccccceeecCCCCcccc
Q 005860 316 ET---VARMMESIHVISIKELSEQEC 338 (673)
Q Consensus 316 ~~---v~~~~~~~~~~~l~~L~~~~~ 338 (673)
.. +.........+.+++++.++.
T Consensus 189 ~~~~~l~~l~~r~~~i~f~~~~~~~~ 214 (516)
T 1sxj_A 189 RNLPKMRPFDRVCLDIQFRRPDANSI 214 (516)
T ss_dssp TTSSTTGGGTTTSEEEECCCCCHHHH
T ss_pred CCCccchhhHhceEEEEeCCCCHHHH
Confidence 22 222112244677787777664
No 188
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.50 E-value=0.00021 Score=73.52 Aligned_cols=146 Identities=12% Similarity=0.105 Sum_probs=79.5
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCC-eEEEEEcCCcccHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFD-KRMWVCVSDPFDELRIAKA 247 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~ 247 (673)
.+++|.+..++.+...+..+. +..+.++|+.|+||||+|+.+.+... ...+. ....+..+.......+ ++
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~-------~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~~i-r~ 95 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK-------LPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGIDVV-RN 95 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC-------CCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSHHHH-HT
T ss_pred HHhcCcHHHHHHHHHHHhcCC-------CceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccHHHH-HH
Confidence 467898888888888876543 22389999999999999999887421 11111 1223333332222211 11
Q ss_pred HHHHhhCCCCCcCcHHHHHHHHHHHhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCChh-HHHh-cccc
Q 005860 248 IIEALEGFVPTVGELNSLLESIRASLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKET-VARM-MESI 325 (673)
Q Consensus 248 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~~ 325 (673)
++..+.... ..+.+.+-++|+|++..-.....+.+...+......+++|++|.... +... ..-.
T Consensus 96 ~i~~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~ 161 (340)
T 1sxj_C 96 QIKDFASTR--------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQC 161 (340)
T ss_dssp HHHHHHHBC--------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHHhhc--------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhc
Confidence 111111000 00123467899999854333445556555554455677777765432 1111 1113
Q ss_pred ceeecCCCCccc
Q 005860 326 HVISIKELSEQE 337 (673)
Q Consensus 326 ~~~~l~~L~~~~ 337 (673)
..+.+.+++.++
T Consensus 162 ~~~~~~~l~~~~ 173 (340)
T 1sxj_C 162 TRFRFQPLPQEA 173 (340)
T ss_dssp EEEECCCCCHHH
T ss_pred eeEeccCCCHHH
Confidence 466777777655
No 189
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.46 E-value=0.00025 Score=72.91 Aligned_cols=51 Identities=24% Similarity=0.309 Sum_probs=39.1
Q ss_pred CCcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 168 VSEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-++++|++..++.+..++...... ......|.|+|++|+|||+||+.+.+.
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~--~~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKR--NECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHT--TSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHhc--CCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 357999999999999888643100 122456899999999999999999874
No 190
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.43 E-value=0.00046 Score=67.87 Aligned_cols=52 Identities=19% Similarity=0.181 Sum_probs=35.7
Q ss_pred CcceechhhHHHHHHHhcc---CCc--ccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLC---ESS--EEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~---~~~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+++|.+..++.+.+++.. ... .-+....+-|.|+|++|+|||++|+.+++.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 5789999888777665422 110 000122345789999999999999999884
No 191
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.37 E-value=0.00019 Score=74.30 Aligned_cols=138 Identities=17% Similarity=0.188 Sum_probs=86.0
Q ss_pred ccCceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHh-hhCCccceeeeccccccccc-cchhhhcc
Q 005860 490 YQEKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLF-DQLKCLRALRIATLMNTWDV-NSTNKILK 567 (673)
Q Consensus 490 ~~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~-~~l~~L~~L~L~~~~~~~~~-~~~~~lp~ 567 (673)
..+.++.+.+..+....+++ + .+++|++|.+..+.... ....... ..+++|+.|+|+...+.... ..+..+.+
T Consensus 170 ~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~---~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPD---SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp TCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCH---HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred cCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCCh---HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 34678999987763233333 3 47899999987665311 1122221 36889999998531110000 11222222
Q ss_pred cc--ccccccccceecCCCCcc-cchhhh---cCCCccEEEeccCCCCcc-----ccccccccccCCeeeccccccc
Q 005860 568 GI--EKLIHLRYLRLVGLGTEE-LPETCC---ELLNLQVLEIEQCTSLKR-----LPLGIGKLVNLRHLTYDDSCLE 633 (673)
Q Consensus 568 ~i--~~L~~Lr~L~L~~~~i~~-LP~~i~---~L~~L~~L~l~~c~~l~~-----lP~~i~~L~~Lr~L~l~~~~l~ 633 (673)
.+ ..+++|++|+|++|.+.. .+..+. .+++|++|+|+.|. +.. ++..+.++++|+.|+++.|.+.
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 22 357899999999988642 233333 57899999998765 654 6666778899999999888765
No 192
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.32 E-value=0.001 Score=68.05 Aligned_cols=137 Identities=11% Similarity=0.043 Sum_probs=76.5
Q ss_pred hhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCcccc--------------------ccCCeEEEEE
Q 005860 175 DEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVF--------------------EYFDKRMWVC 234 (673)
Q Consensus 175 ~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~ 234 (673)
++..+.+...+..+. -...+.++|+.|+||||+|+.+.+...-. .|++ ..++.
T Consensus 8 ~~~~~~l~~~i~~~~------~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~ 80 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR------GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLA 80 (334)
T ss_dssp HHHHHHHHHHHHTTC------CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEEC
T ss_pred HHHHHHHHHHHHcCC------cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEe
Confidence 445666666665443 23468899999999999998887631100 0122 12222
Q ss_pred cCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHh-----CCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEE
Q 005860 235 VSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASL-----VGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKI 309 (673)
Q Consensus 235 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~i 309 (673)
... .......++... +.+.+ .+++-++|+|++..-.....+.+...+.....++.+
T Consensus 81 ~~~------------------~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~ 141 (334)
T 1a5t_A 81 PEK------------------GKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWF 141 (334)
T ss_dssp CCT------------------TCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEE
T ss_pred ccc------------------cCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEE
Confidence 110 001112222222 22222 356778999999554445566677777666667787
Q ss_pred EEEcCChh-HHH-hccccceeecCCCCccc
Q 005860 310 LVTTRKET-VAR-MMESIHVISIKELSEQE 337 (673)
Q Consensus 310 ivTtr~~~-v~~-~~~~~~~~~l~~L~~~~ 337 (673)
|++|.+.+ +.. ...-...+++++++.++
T Consensus 142 Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~ 171 (334)
T 1a5t_A 142 FLATREPERLLATLRSRCRLHYLAPPPEQY 171 (334)
T ss_dssp EEEESCGGGSCHHHHTTSEEEECCCCCHHH
T ss_pred EEEeCChHhCcHHHhhcceeeeCCCCCHHH
Confidence 77776643 222 12224567888887665
No 193
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.23 E-value=0.00013 Score=67.81 Aligned_cols=110 Identities=15% Similarity=0.160 Sum_probs=80.7
Q ss_pred hhhHHHHhhhCCccceeeecccccccccc-ch-----hhhccccccccccccceecCCCCcc-----cchhhhcCCCccE
Q 005860 532 THVLQSLFDQLKCLRALRIATLMNTWDVN-ST-----NKILKGIEKLIHLRYLRLVGLGTEE-----LPETCCELLNLQV 600 (673)
Q Consensus 532 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~-----~~lp~~i~~L~~Lr~L~L~~~~i~~-----LP~~i~~L~~L~~ 600 (673)
...+...+...+.|+.|+|++ + .+ ..+...+....+|++|+|++|.+.. +...+...++|++
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~-------n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~ 97 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNN-------IMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKS 97 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTT-------CTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCE
T ss_pred HHHHHHHHhcCCCCCEEEecC-------CCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCE
Confidence 345566778889999999999 6 43 3456667778899999999998753 5566777789999
Q ss_pred EEeccCCCCcc-----ccccccccccCCeeec--ccccccc-----ccccCCCCCCCCcCC
Q 005860 601 LEIEQCTSLKR-----LPLGIGKLVNLRHLTY--DDSCLEF-----IPKGIQRLTNLRTLS 649 (673)
Q Consensus 601 L~l~~c~~l~~-----lP~~i~~L~~Lr~L~l--~~~~l~~-----lP~~i~~L~~L~~L~ 649 (673)
|+|++|. +.. +...+...++|++|++ ++|.+.. +...+...++|+.|.
T Consensus 98 L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~ 157 (185)
T 1io0_A 98 LNVESNF-ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFG 157 (185)
T ss_dssp EECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEE
T ss_pred EECcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEe
Confidence 9999986 654 5667888889999999 7787753 333333344454443
No 194
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.22 E-value=0.00048 Score=79.98 Aligned_cols=45 Identities=27% Similarity=0.357 Sum_probs=37.9
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+.++||+.++.++...|.... ..-+.++|.+|+||||||+.+.+.
T Consensus 170 d~viGr~~~i~~l~~~l~~~~-------~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT-------KNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS-------CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCC-------CCceEEEcCCCCCHHHHHHHHHHH
Confidence 568999999999999986543 234689999999999999998874
No 195
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.22 E-value=0.00082 Score=68.44 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=38.2
Q ss_pred CcceechhhHHHHHHHhccCCc-----ccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESS-----EEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~-----~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+++|.+..++.|.+.+..... .......+-|.|+|++|+|||+||+++++.
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 5799999999999887731100 000123456899999999999999999984
No 196
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.17 E-value=0.00027 Score=71.55 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=64.5
Q ss_pred cceechhhHHHHHHHhccCCcc--cccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHH
Q 005860 170 EIRGRDEEKSSLKSKLLCESSE--EIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKA 247 (673)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 247 (673)
.++|.+..++.+...+...... ........+.|+|++|+||||+|+.+.+. ....-...+.+..+...... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccccccc-cHHH
Confidence 5789999888888777543100 00122468999999999999999999884 21111234555554322211 1111
Q ss_pred HHHHhhCCCCC--cCcHHHHHHHHHHHhCCCeEEEEEcCCCCCCccchhhhhhhcc
Q 005860 248 IIEALEGFVPT--VGELNSLLESIRASLVGKKFLLILDDMWTDDYSKWEPFHYCLK 301 (673)
Q Consensus 248 i~~~l~~~~~~--~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~ 301 (673)
.++..... ......+...+. ....-+|+||++..-+......+...+.
T Consensus 95 ---l~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~le 144 (311)
T 4fcw_A 95 ---LIGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQMLD 144 (311)
T ss_dssp ---HHCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred ---hcCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHHh
Confidence 12211110 000012222222 2334699999995544444555555443
No 197
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.14 E-value=0.00071 Score=72.67 Aligned_cols=45 Identities=22% Similarity=0.295 Sum_probs=37.5
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+.++||+.+++++...|.... ..-+.|+|.+|+|||++|+.+.+.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~-------~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT-------KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS-------SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccC-------CCCeEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999986543 123579999999999999998874
No 198
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.10 E-value=0.0011 Score=68.61 Aligned_cols=52 Identities=19% Similarity=0.271 Sum_probs=38.1
Q ss_pred CcceechhhHHHHHHHhccC----Cc-ccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCE----SS-EEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~----~~-~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+++|.+..++.|.+.+... .. .......+.|.|+|++|+|||+||+++++.
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999998877421 00 000123457889999999999999999884
No 199
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.09 E-value=0.00028 Score=69.75 Aligned_cols=47 Identities=15% Similarity=0.105 Sum_probs=33.5
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+.++|.+..+.++.+.+..-.. ...-|.|+|..|+|||++|+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~-----~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP-----LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT-----SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhC-----CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 4589999998888876644221 1234779999999999999999985
No 200
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.08 E-value=0.0029 Score=64.30 Aligned_cols=52 Identities=23% Similarity=0.293 Sum_probs=37.4
Q ss_pred CcceechhhHHHHHHHhccC----Cc-ccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCE----SS-EEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~----~~-~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
++++|.+..++.|.+.+... .. .......+-|.|+|++|+|||+||+++++.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 57899999888888766321 00 000123467889999999999999999984
No 201
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.08 E-value=0.0018 Score=67.77 Aligned_cols=53 Identities=25% Similarity=0.320 Sum_probs=38.6
Q ss_pred CCcceechhhHHHHHHHhccCCc-----ccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 168 VSEIRGRDEEKSSLKSKLLCESS-----EEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~-----~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-.+++|.+..++.+..++..... .......+-|.|+|.+|+|||+||+++.+.
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 35799999999999988732110 000122457899999999999999999874
No 202
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.02 E-value=0.0004 Score=63.28 Aligned_cols=85 Identities=12% Similarity=0.210 Sum_probs=39.8
Q ss_pred cccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccc-hhh-hccccccc----cccccceecCCC-Ccc
Q 005860 515 KNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNS-TNK-ILKGIEKL----IHLRYLRLVGLG-TEE 587 (673)
Q Consensus 515 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~-lp~~i~~L----~~Lr~L~L~~~~-i~~ 587 (673)
.+|+.|+++++.. ...--..+.++++|+.|+|++ |. ++. -...+..+ ++|++|+|++|. ++.
T Consensus 61 ~~L~~LDLs~~~I----td~GL~~L~~~~~L~~L~L~~-------C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 61 YKIQAIDATDSCI----MSIGFDHMEGLQYVEKIRLCK-------CHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCEEEEEEESCCC----CGGGGGGGTTCSCCCEEEEES-------CTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCCc----cHHHHHHhcCCCCCCEEEeCC-------CCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 3566666666542 111111234566666666666 32 221 12223332 246666666654 433
Q ss_pred c-chhhhcCCCccEEEeccCCCCc
Q 005860 588 L-PETCCELLNLQVLEIEQCTSLK 610 (673)
Q Consensus 588 L-P~~i~~L~~L~~L~l~~c~~l~ 610 (673)
- -..+.++++|++|+|++|+.+.
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCTTCC
T ss_pred HHHHHHhcCCCCCEEECCCCCCCC
Confidence 1 1234455666666666665443
No 203
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.98 E-value=0.0029 Score=60.15 Aligned_cols=84 Identities=20% Similarity=0.177 Sum_probs=51.6
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhC-----------CC-CCcCcHHH
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEG-----------FV-PTVGELNS 264 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~-----------~~-~~~~~~~~ 264 (673)
-.++.|+|.+|+||||||..+.. ..-..++|++....++...+.. +.+.++. .. ....+...
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 45899999999999999988876 1224678888776555554433 3322211 11 11222233
Q ss_pred HHHHHHHHhCCCeEEEEEcCCC
Q 005860 265 LLESIRASLVGKKFLLILDDMW 286 (673)
Q Consensus 265 ~~~~l~~~l~~kr~LlVLDdvw 286 (673)
....++..+..+.-+||+|.+-
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcH
Confidence 4445555554457799999873
No 204
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.96 E-value=0.0025 Score=63.95 Aligned_cols=52 Identities=25% Similarity=0.349 Sum_probs=38.2
Q ss_pred CcceechhhHHHHHHHhccCCc-----ccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESS-----EEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~-----~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+++|.+..++.+.+.+..... .......+.+.|+|++|+||||+|+.+.+.
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 5799999999999887743110 000122457899999999999999999884
No 205
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.94 E-value=0.00034 Score=70.62 Aligned_cols=47 Identities=19% Similarity=0.190 Sum_probs=36.3
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+.++|+...+.++.+.+..-.. ...-|.|+|.+|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~-----~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP-----SDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS-----TTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC-----CCCcEEEECCCCchHHHHHHHHHHh
Confidence 4689999999988887754321 1234679999999999999999984
No 206
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.93 E-value=0.0015 Score=65.88 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=37.1
Q ss_pred CcceechhhHHHHHHHhccC--Cc--c---cccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCE--SS--E---EIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~--~~--~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..++|.+..++.+...+... .. . .......-+.|+|++|+|||++|+.+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999988877541 00 0 00012345789999999999999999884
No 207
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.93 E-value=0.00018 Score=74.47 Aligned_cols=126 Identities=16% Similarity=0.123 Sum_probs=76.6
Q ss_pred cccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhh-hccccc--cccccccceecCC--C-
Q 005860 511 IFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNK-ILKGIE--KLIHLRYLRLVGL--G- 584 (673)
Q Consensus 511 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~-lp~~i~--~L~~Lr~L~L~~~--~- 584 (673)
+..+++|+.|.+.++.. . . ++. + .+++|+.|++.. +.+.. ....+. .+++|++|+|+.+ .
T Consensus 168 l~~~P~L~~L~L~g~~~-l---~-l~~-~-~~~~L~~L~L~~-------~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~ 233 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNN-L---S-IGK-K-PRPNLKSLEIIS-------GGLPDSVVEDILGSDLPNLEKLVLYVGVEDY 233 (362)
T ss_dssp HHTCTTCCEEEEECCBT-C---B-CCS-C-BCTTCSEEEEEC-------SBCCHHHHHHHHHSBCTTCCEEEEECBCGGG
T ss_pred HhcCCCCcEEEEeCCCC-c---e-ecc-c-cCCCCcEEEEec-------CCCChHHHHHHHHccCCCCcEEEEecccccc
Confidence 44578899998877631 1 1 122 2 367888888877 55322 222333 6788999988531 1
Q ss_pred -----Ccccchhh--hcCCCccEEEeccCCCCccccccc---cccccCCeeecccccccc-----ccccCCCCCCCCcCC
Q 005860 585 -----TEELPETC--CELLNLQVLEIEQCTSLKRLPLGI---GKLVNLRHLTYDDSCLEF-----IPKGIQRLTNLRTLS 649 (673)
Q Consensus 585 -----i~~LP~~i--~~L~~L~~L~l~~c~~l~~lP~~i---~~L~~Lr~L~l~~~~l~~-----lP~~i~~L~~L~~L~ 649 (673)
+..+.+.+ ..+++|++|+|++|......+..+ ..+++|++|+++.|.+.. ++.++.++++|+.|.
T Consensus 234 ~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~ 313 (362)
T 2ra8_A 234 GFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFIN 313 (362)
T ss_dssp TCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEE
T ss_pred ccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEE
Confidence 22222222 357899999999876322223233 357899999998887764 455555666666664
Q ss_pred e
Q 005860 650 E 650 (673)
Q Consensus 650 ~ 650 (673)
.
T Consensus 314 L 314 (362)
T 2ra8_A 314 M 314 (362)
T ss_dssp C
T ss_pred C
Confidence 3
No 208
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.93 E-value=0.0003 Score=70.25 Aligned_cols=67 Identities=18% Similarity=0.439 Sum_probs=44.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEc--CCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCV--SDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLV 274 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 274 (673)
-+++.|+|++|+||||||.++... .-..++|+++ .+..+. . ..+.+.....+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-------------~---~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-------------Y---NTDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-------------C---BCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-------------h---hcCHHHHHHHHHHHHh
Confidence 357789999999999999888763 1224567766 332110 0 0345555666666666
Q ss_pred CCeEEEEEcCC
Q 005860 275 GKKFLLILDDM 285 (673)
Q Consensus 275 ~kr~LlVLDdv 285 (673)
..+ +||+|++
T Consensus 182 ~~~-LLVIDsI 191 (331)
T 2vhj_A 182 QHR-VIVIDSL 191 (331)
T ss_dssp HCS-EEEEECC
T ss_pred hCC-EEEEecc
Confidence 556 9999999
No 209
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.93 E-value=0.0021 Score=64.74 Aligned_cols=52 Identities=23% Similarity=0.242 Sum_probs=37.8
Q ss_pred CcceechhhHHHHHHHhccCCc-c-----cccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESS-E-----EIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~-~-----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+++|.+..++.+.+.+...-. + -+....+.|.|+|++|+||||||+++++.
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 4699999998888887643200 0 00123457899999999999999999985
No 210
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.93 E-value=0.00037 Score=70.42 Aligned_cols=54 Identities=17% Similarity=0.056 Sum_probs=34.0
Q ss_pred hhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCcccc-ccCCeEEEEEc
Q 005860 176 EEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVF-EYFDKRMWVCV 235 (673)
Q Consensus 176 ~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~v 235 (673)
...+.+.+++..... .....+.|+|+.|+|||+||+++++. .. ..-..++++++
T Consensus 135 ~~~~~~~~~i~~~~~----~~~~~lll~G~~GtGKT~La~aia~~--~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 135 EAFSAILDFVEQYPS----AEQKGLYLYGDMGIGKSYLLAAMAHE--LSEKKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHCSC----SSCCEEEEECSTTSSHHHHHHHHHHH--HHHHSCCCEEEEEH
T ss_pred HHHHHHHHHHHhccc----cCCceEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEH
Confidence 344455555543221 12356889999999999999999985 22 22234556654
No 211
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.93 E-value=0.0031 Score=67.14 Aligned_cols=52 Identities=23% Similarity=0.293 Sum_probs=38.0
Q ss_pred CcceechhhHHHHHHHhccC----Cc-ccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCE----SS-EEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~----~~-~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
++++|.+..++.|.+.+... .. .......+-|.|+|++|+|||+||+++++.
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999888876321 00 000123467889999999999999999984
No 212
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.92 E-value=0.0014 Score=67.75 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=37.4
Q ss_pred CcceechhhHHHHHHHhccC----Cc-ccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCE----SS-EEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~----~~-~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+++|.+..++.|.+.+... .. .......+-|.|+|++|+|||+||+++++.
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 47999999999998876321 00 000122345889999999999999999985
No 213
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.87 E-value=0.0014 Score=70.57 Aligned_cols=52 Identities=21% Similarity=0.247 Sum_probs=37.9
Q ss_pred CcceechhhHHHHHHHhccCCcc-c-----ccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSE-E-----IINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~-~-----~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+++|.+..++++.+++...... + +....+-|.|+|++|+|||++|+++.+.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999998887532000 0 0022345889999999999999999884
No 214
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.85 E-value=0.00054 Score=62.36 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=58.1
Q ss_pred Cccceeeeccccccccccchhh-hccccccccccccceecCCC-Cccc-chhhhcC----CCccEEEeccCCCCcccc-c
Q 005860 543 KCLRALRIATLMNTWDVNSTNK-ILKGIEKLIHLRYLRLVGLG-TEEL-PETCCEL----LNLQVLEIEQCTSLKRLP-L 614 (673)
Q Consensus 543 ~~L~~L~L~~~~~~~~~~~~~~-lp~~i~~L~~Lr~L~L~~~~-i~~L-P~~i~~L----~~L~~L~l~~c~~l~~lP-~ 614 (673)
-.|+.||+++ +.+.. =...+..+++|+.|+|++|. ++.- -..|+.+ ++|+.|+|++|.++..-= .
T Consensus 61 ~~L~~LDLs~-------~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 61 YKIQAIDATD-------SCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCEEEEEEES-------CCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred ceEeEEeCcC-------CCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 3689999999 66433 23456788999999999997 6542 1345554 379999999998775411 2
Q ss_pred cccccccCCeeecccc
Q 005860 615 GIGKLVNLRHLTYDDS 630 (673)
Q Consensus 615 ~i~~L~~Lr~L~l~~~ 630 (673)
.+.++++|++|+++++
T Consensus 134 ~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HGGGCTTCCEEEEESC
T ss_pred HHhcCCCCCEEECCCC
Confidence 4678899999997665
No 215
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.81 E-value=0.0014 Score=68.95 Aligned_cols=65 Identities=17% Similarity=0.063 Sum_probs=34.0
Q ss_pred cccccccccceecCCCCc-----ccc-hhhhcCCCccEEEeccCCCCccccc-cccccccCCeeecccccccccc
Q 005860 569 IEKLIHLRYLRLVGLGTE-----ELP-ETCCELLNLQVLEIEQCTSLKRLPL-GIGKLVNLRHLTYDDSCLEFIP 636 (673)
Q Consensus 569 i~~L~~Lr~L~L~~~~i~-----~LP-~~i~~L~~L~~L~l~~c~~l~~lP~-~i~~L~~Lr~L~l~~~~l~~lP 636 (673)
+..+.+|+.+.+.++.+. .++ ..+..+++|+.++|.. ++..++. .|.++.+|+.+.+..+ +..++
T Consensus 267 F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 267 FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred hhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence 444556666666554433 333 3455566666666652 2555553 3555666666665333 44444
No 216
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.70 E-value=0.007 Score=69.33 Aligned_cols=45 Identities=24% Similarity=0.245 Sum_probs=37.7
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+.++||+.+++++...|.... ..-+.|+|.+|+||||+|+.+.+.
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~-------~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR-------KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS-------SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccC-------CCCeEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999986543 234679999999999999998874
No 217
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.68 E-value=0.00051 Score=78.73 Aligned_cols=125 Identities=18% Similarity=0.252 Sum_probs=70.5
Q ss_pred CcceechhhHHHHHHHhccCCccc--ccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEE--IINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAK 246 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 246 (673)
..++|.+..++.+...+....... .......+.++|++|+|||++|+.+.+. ....-...+.++++.-.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~---- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKH---- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSC----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhccccc----
Confidence 468999999988888775432100 0123457999999999999999999884 21112234555544321100
Q ss_pred HHHHHhhCCCCCcCcHHHHHHHHHHHhCCCeEEEEEcCCCCCCccchhhhhhhccCC-----------CCCeEEEEEcC
Q 005860 247 AIIEALEGFVPTVGELNSLLESIRASLVGKKFLLILDDMWTDDYSKWEPFHYCLKNG-----------VRGSKILVTTR 314 (673)
Q Consensus 247 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr 314 (673)
......+...++. ....+|+||++..-+....+.+...+..+ ....+||+||.
T Consensus 565 ------------~~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 565 ------------STSGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp ------------CCC---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred ------------ccccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 0000111112221 23348999999655544555555544431 13457888887
No 218
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.66 E-value=0.0021 Score=73.63 Aligned_cols=45 Identities=22% Similarity=0.295 Sum_probs=37.7
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+.++||+.+++++...|.... ..-+.++|++|+|||++|+.+.+.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~-------~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT-------KNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS-------SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCC-------CCCeEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999986644 123679999999999999988874
No 219
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.65 E-value=0.0034 Score=61.45 Aligned_cols=53 Identities=25% Similarity=0.241 Sum_probs=34.8
Q ss_pred CCcceechhhHHHHHHHhc---cCCc-cc-ccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 168 VSEIRGRDEEKSSLKSKLL---CESS-EE-IINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~---~~~~-~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-++++|.+..++++.+.+. .... .. +....+-+.|+|++|+||||||+.+.+.
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3578999988777665432 1110 00 0011234889999999999999999884
No 220
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.51 E-value=0.002 Score=67.74 Aligned_cols=97 Identities=11% Similarity=0.092 Sum_probs=45.7
Q ss_pred cccccccceecCCCCcccch-hhhcCCCccEEEeccCCCCccccc-cccccccCCeeeccccccc-----ccccc-CCCC
Q 005860 571 KLIHLRYLRLVGLGTEELPE-TCCELLNLQVLEIEQCTSLKRLPL-GIGKLVNLRHLTYDDSCLE-----FIPKG-IQRL 642 (673)
Q Consensus 571 ~L~~Lr~L~L~~~~i~~LP~-~i~~L~~L~~L~l~~c~~l~~lP~-~i~~L~~Lr~L~l~~~~l~-----~lP~~-i~~L 642 (673)
.+.+|+.+.|..+ ++.++. .+.+ .+|+.+.+.. ++..++. .|.++.+|+.+.+.++.+. .++.. +.++
T Consensus 224 ~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c 299 (401)
T 4fdw_A 224 KTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGC 299 (401)
T ss_dssp TCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTC
T ss_pred CCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCC
Confidence 3444444444432 344432 2222 4555555532 2555543 4666777777776555443 34433 5556
Q ss_pred CCCCcCCeeE-EccCCccCCCccccCCCCC
Q 005860 643 TNLRTLSEFV-VVRGGSKYGGKACNLEGLR 671 (673)
Q Consensus 643 ~~L~~L~~~~-~~~~~~~~~~~~~~l~~L~ 671 (673)
++|+.+..-. +..-....+..|.+|++|.
T Consensus 300 ~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~ 329 (401)
T 4fdw_A 300 PKLARFEIPESIRILGQGLLGGNRKVTQLT 329 (401)
T ss_dssp TTCCEECCCTTCCEECTTTTTTCCSCCEEE
T ss_pred ccCCeEEeCCceEEEhhhhhcCCCCccEEE
Confidence 6665553211 1111112355566666553
No 221
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.43 E-value=0.0044 Score=59.39 Aligned_cols=114 Identities=16% Similarity=0.112 Sum_probs=60.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCC--------------------
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVP-------------------- 257 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-------------------- 257 (673)
.+++|+|.+|+|||||++.+.... ...=..++|+.... ....+...+. .++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~--~~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKG--LRDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH--HHHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH--HHCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCce
Confidence 589999999999999999888532 11223466766544 3344433332 3322110
Q ss_pred ---CcCcHHHHHHHHHHHh---CCCeEEEEEcCCCCC---CccchhhhhhhccC--CCCCeEEEEEcCCh
Q 005860 258 ---TVGELNSLLESIRASL---VGKKFLLILDDMWTD---DYSKWEPFHYCLKN--GVRGSKILVTTRKE 316 (673)
Q Consensus 258 ---~~~~~~~~~~~l~~~l---~~kr~LlVLDdvw~~---~~~~~~~l~~~l~~--~~~gs~iivTtr~~ 316 (673)
...+.+++...+...+ .-+..+||+|..-.. +......+...+.. ...|..||+||...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 0113445555554444 223459999998421 22222333333322 13477899998865
No 222
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.37 E-value=0.0069 Score=58.50 Aligned_cols=89 Identities=21% Similarity=0.139 Sum_probs=51.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccc----cCCeEEEEEcCCcccHHHHHHHHHHHhhCCCC---------CcCcHH
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFE----YFDKRMWVCVSDPFDELRIAKAIIEALEGFVP---------TVGELN 263 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 263 (673)
-.++.|+|.+|+|||||+..+........ .-..++|+.....++...+. .+++.++.... ...+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 35899999999999999988776311111 13578899877655554432 34444432210 011222
Q ss_pred ---HHHHHHHHHhC-CCeEEEEEcCCC
Q 005860 264 ---SLLESIRASLV-GKKFLLILDDMW 286 (673)
Q Consensus 264 ---~~~~~l~~~l~-~kr~LlVLDdvw 286 (673)
.....+.+.+. .+.-+||||.+-
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 22333444443 467789999883
No 223
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.37 E-value=0.017 Score=59.07 Aligned_cols=58 Identities=17% Similarity=0.201 Sum_probs=39.7
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcCccccc----cCCeEEEEEcCCcccHHHHHHHHHHHhh
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYNDSDVFE----YFDKRMWVCVSDPFDELRIAKAIIEALE 253 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 253 (673)
..-.++.|+|.+|+||||||..+........ .-..++|++....+++..+.. +++.++
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 3457999999999999999977765321111 224688999888777765543 444443
No 224
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.31 E-value=0.026 Score=54.02 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=21.4
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+++|+|+.|+|||||.+.+..-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999885
No 225
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.22 E-value=0.0042 Score=58.34 Aligned_cols=42 Identities=24% Similarity=0.219 Sum_probs=32.9
Q ss_pred chhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhc
Q 005860 174 RDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 174 r~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
|++.++.+.+.+.... .....+|+|+|..|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~----~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK----TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSC----CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc----cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5566777777776543 13468999999999999999998876
No 226
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.21 E-value=0.0084 Score=61.28 Aligned_cols=83 Identities=20% Similarity=0.208 Sum_probs=54.4
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCC-----CcCcHHHHHHHHH
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVP-----TVGELNSLLESIR 270 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 270 (673)
.-.++.|+|++|+||||||.++... ....=..++|++....++.. .++.++.... ...+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 3479999999999999999888764 22222357889877766654 4555544311 2334555555555
Q ss_pred HHhC-CCeEEEEEcCC
Q 005860 271 ASLV-GKKFLLILDDM 285 (673)
Q Consensus 271 ~~l~-~kr~LlVLDdv 285 (673)
..++ .+.-++|+|.+
T Consensus 133 ~l~~~~~~dlvVIDSi 148 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSV 148 (356)
T ss_dssp HHHHTSCCSEEEEECT
T ss_pred HHhhhcCCCeEEehHh
Confidence 5543 45568999987
No 227
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.17 E-value=0.015 Score=56.08 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-.+++|+|+.|+|||||++.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999885
No 228
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.13 E-value=0.012 Score=59.71 Aligned_cols=88 Identities=16% Similarity=0.185 Sum_probs=52.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCcccccc----CCeEEEEEcCCcccHHHHHHHHHHHhhCCCC---------CcCcHH
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEY----FDKRMWVCVSDPFDELRIAKAIIEALEGFVP---------TVGELN 263 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 263 (673)
-.++.|+|.+|+||||||.++......... -..++|++....++...+. ++++.++.... ...+.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 358999999999999999777653211110 2468999988877776654 34455543210 111222
Q ss_pred ---HHHHHHHHHhC--CCeEEEEEcCC
Q 005860 264 ---SLLESIRASLV--GKKFLLILDDM 285 (673)
Q Consensus 264 ---~~~~~l~~~l~--~kr~LlVLDdv 285 (673)
++...+...++ .+.-+||+|.+
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 23344444443 45668888887
No 229
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.13 E-value=0.0093 Score=60.52 Aligned_cols=88 Identities=17% Similarity=0.168 Sum_probs=52.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccc---------cC-----CeEEEEEcCCcccHHHHHHHHHHHhhCCC------
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFE---------YF-----DKRMWVCVSDPFDELRIAKAIIEALEGFV------ 256 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------ 256 (673)
-.++.|+|.+|+||||||.++........ .. ..++|++....+++..+.. +++.++...
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDN 176 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcC
Confidence 47999999999999999977765321111 11 4688999888877776653 345554321
Q ss_pred ---CCcCcHH---HHHHHHHHHhC--CCeEEEEEcCC
Q 005860 257 ---PTVGELN---SLLESIRASLV--GKKFLLILDDM 285 (673)
Q Consensus 257 ---~~~~~~~---~~~~~l~~~l~--~kr~LlVLDdv 285 (673)
....+.+ ++...+.+.++ .+.-+||+|.+
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0111222 23334444443 34557888877
No 230
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.07 E-value=0.0042 Score=72.00 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=38.0
Q ss_pred CcceechhhHHHHHHHhccCCcc--cccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSE--EIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..++|.+..++.+...+...... ........+.|+|+.|+|||++|+.+.+.
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 35799999888888777543210 00123468899999999999999999884
No 231
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.07 E-value=0.01 Score=61.26 Aligned_cols=52 Identities=19% Similarity=0.187 Sum_probs=37.9
Q ss_pred CcceechhhHHHHHHHhccCC--c----ccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCES--S----EEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~--~----~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+++.|.++.+++|.+.+.-+- + .-+....+-|.++|++|.|||.||+++.+.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 478899999888877664310 0 001233566889999999999999999985
No 232
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.04 E-value=0.014 Score=63.66 Aligned_cols=51 Identities=24% Similarity=0.289 Sum_probs=35.0
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+++|.+.-.+.+.+.+.-..-.. .....++.|+|++|+||||||+.+...
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~-~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTK-SLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSS-SCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcc-cCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 457888887777655442111000 113458999999999999999999884
No 233
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.04 E-value=0.0041 Score=59.16 Aligned_cols=112 Identities=15% Similarity=0.010 Sum_probs=61.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCC--cCcHHHHHHHHHHHhC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPT--VGELNSLLESIRASLV 274 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~ 274 (673)
-.++.|+|..|+||||++..+... ...+-..++.+....... ....+++.++..... .....++...+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 478999999999999999666553 323333344443332211 112334444332111 2233455556665555
Q ss_pred CCeE-EEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCCh
Q 005860 275 GKKF-LLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKE 316 (673)
Q Consensus 275 ~kr~-LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 316 (673)
+.++ +||+|.+..-+.++.+.+.. +.+ .|-.||+|-++.
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDK 126 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSB
T ss_pred CCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEeccc
Confidence 5545 99999985433334444433 222 267899998853
No 234
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.011 Score=62.00 Aligned_cols=52 Identities=21% Similarity=0.266 Sum_probs=38.2
Q ss_pred CcceechhhHHHHHHHhccCCc------ccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESS------EEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+++.|.++.+++|.+.+...-. .-+....+-|.++|++|+|||+||+++.+.
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 5788999998888876632110 001234567899999999999999999985
No 235
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.01 E-value=0.0056 Score=64.20 Aligned_cols=52 Identities=23% Similarity=0.268 Sum_probs=38.2
Q ss_pred CcceechhhHHHHHHHhccC---Cc---ccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCE---SS---EEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~---~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+++.|.++.+++|.+.+..+ +. .-+....+-|.++|++|.|||.||+++.+.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 57899999998888765321 10 001234567899999999999999999995
No 236
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.012 Score=61.77 Aligned_cols=52 Identities=23% Similarity=0.196 Sum_probs=38.1
Q ss_pred CcceechhhHHHHHHHhccCCc------ccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESS------EEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+++.|.++.+++|.+.+..+-. .-+....+-|.++|++|.|||+||+++.+.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 5788999988888776643110 001234577899999999999999999995
No 237
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.93 E-value=0.016 Score=59.62 Aligned_cols=82 Identities=18% Similarity=0.106 Sum_probs=53.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCC-----CcCcHHHHHHHHHH
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVP-----TVGELNSLLESIRA 271 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 271 (673)
-.++.|.|.+|+||||||.++... ....-..++|++....++.. .++.++.... +..+.++....+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 358889999999999999777654 22223468999988776654 2444443211 22355666666666
Q ss_pred HhCC-CeEEEEEcCC
Q 005860 272 SLVG-KKFLLILDDM 285 (673)
Q Consensus 272 ~l~~-kr~LlVLDdv 285 (673)
..+. ..-+||+|.+
T Consensus 147 l~~~~~~~lVVIDsl 161 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSV 161 (366)
T ss_dssp HHTTTCCSEEEEECT
T ss_pred HHhcCCCCEEEEeCh
Confidence 6543 4558999988
No 238
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.90 E-value=0.0096 Score=63.65 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=35.1
Q ss_pred CcceechhhHHHHHHHh---ccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKL---LCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L---~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
++++|.+..++.+..++ .... ...+-+.++|++|+|||+||+.+.+.
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~-----~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKK-----MAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC-----CTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCC-----CCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 67999998877655443 3222 22345889999999999999999985
No 239
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.89 E-value=0.0064 Score=57.35 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=29.1
Q ss_pred hHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 177 EKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 177 ~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-+++|.+.+.... ....+|+|+|..|+|||||++.+...
T Consensus 7 ~~~~~~~~~~~~~-----~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPRQ-----PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTTC-----CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-----CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4455556554331 34679999999999999999998874
No 240
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.79 E-value=0.014 Score=58.17 Aligned_cols=24 Identities=29% Similarity=0.239 Sum_probs=21.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+|+|+|.+|+||||++..+...
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999887763
No 241
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.78 E-value=0.0093 Score=63.56 Aligned_cols=52 Identities=25% Similarity=0.248 Sum_probs=34.9
Q ss_pred CcceechhhHHHHHHHhccCCccc-----ccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEE-----IINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~-----~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+++|.++.++++.+.+..-..+. +....+-|.|+|++|+||||||+.+.+.
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 478999988777766543210000 0011233789999999999999999984
No 242
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.77 E-value=0.024 Score=56.33 Aligned_cols=81 Identities=10% Similarity=0.120 Sum_probs=52.8
Q ss_pred EEEEEccCCChHHHHHHHHhcCcccccc--CCeEEEEEcCCcccHHHHHHHHHHHhhCCCC-----CcCcHHHH-HHHHH
Q 005860 199 IITIVGMGGIGKTTLAQFAYNDSDVFEY--FDKRMWVCVSDPFDELRIAKAIIEALEGFVP-----TVGELNSL-LESIR 270 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~-~~~l~ 270 (673)
++-|.|.+|+||||||.++... .... =..++||+....++.. .+++++...+ ...+.++. ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 7899999999999999666553 2222 2468899988777753 3666665422 12344554 33333
Q ss_pred HH--h-CCCeEEEEEcCCC
Q 005860 271 AS--L-VGKKFLLILDDMW 286 (673)
Q Consensus 271 ~~--l-~~kr~LlVLDdvw 286 (673)
.. + .++.-+||+|-|-
T Consensus 103 ~l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHHTCCTTCCEEEEEECST
T ss_pred HHHHhhccCceEEEEeccc
Confidence 22 2 4578899999883
No 243
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.76 E-value=0.017 Score=65.37 Aligned_cols=97 Identities=15% Similarity=0.215 Sum_probs=57.3
Q ss_pred CcceechhhHHHHHHHhcc----CCc-c-cccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHH
Q 005860 169 SEIRGRDEEKSSLKSKLLC----ESS-E-EIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDEL 242 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~----~~~-~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 242 (673)
+++.|.++.+++|.+.+.- +.- . -+....+-|.++|++|+|||+||+++++.. ..+| +.|+.+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el--g~~~---~~v~~~------ 272 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--GAFF---FLINGP------ 272 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT--TCEE---EEEEHH------
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCeE---EEEEhH------
Confidence 4678899888888776532 110 0 012345678999999999999999999963 2232 334321
Q ss_pred HHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCCeEEEEEcCC
Q 005860 243 RIAKAIIEALEGFVPTVGELNSLLESIRASLVGKKFLLILDDM 285 (673)
Q Consensus 243 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv 285 (673)
++. .... ......+...+....+..+.+|+||++
T Consensus 273 ~l~--------sk~~-gese~~lr~lF~~A~~~~PsIIfIDEi 306 (806)
T 3cf2_A 273 EIM--------SKLA-GESESNLRKAFEEAEKNAPAIIFIDEL 306 (806)
T ss_dssp HHH--------SSCT-THHHHHHHHHHHHHTTSCSEEEEEESG
T ss_pred Hhh--------cccc-hHHHHHHHHHHHHHHHcCCeEEEEehh
Confidence 111 1100 011122333444445677899999998
No 244
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.74 E-value=0.02 Score=60.06 Aligned_cols=52 Identities=23% Similarity=0.224 Sum_probs=37.5
Q ss_pred CcceechhhHHHHHHHhccC----Cc--ccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCE----SS--EEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+++.|.++.+++|.+.+.-. .- .-+-...+-|.++|++|.|||+||+++.+.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 46889999888887765321 00 001234567889999999999999999985
No 245
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.67 E-value=0.013 Score=60.18 Aligned_cols=82 Identities=18% Similarity=0.132 Sum_probs=51.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCC-----CcCcHHHHHHHHHH
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVP-----TVGELNSLLESIRA 271 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 271 (673)
-+++.|.|.+|+||||||.++... ....-..++|++....++.. .++.++.... +..+.++....++.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 458999999999999999777764 22222468899987776643 2344443211 11234444444444
Q ss_pred HhC-CCeEEEEEcCC
Q 005860 272 SLV-GKKFLLILDDM 285 (673)
Q Consensus 272 ~l~-~kr~LlVLDdv 285 (673)
..+ .+.-+||+|.+
T Consensus 136 l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 136 LARSGAVDVIVVDSV 150 (356)
T ss_dssp HHHHTCCSEEEEECG
T ss_pred HHhccCCCEEEEcCH
Confidence 332 34558999987
No 246
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.64 E-value=0.0099 Score=54.85 Aligned_cols=115 Identities=19% Similarity=0.101 Sum_probs=60.4
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCC---cccHHHHHHHHHHHhh-------CCCCC------cCc
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSD---PFDELRIAKAIIEALE-------GFVPT------VGE 261 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~~i~~~l~-------~~~~~------~~~ 261 (673)
..|-|++-.|.||||.|-.+.-. .-.+=..++++.+-. ......++..+- +. -.... ...
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalR--A~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~--v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAAR--AVGHGKNVGVVQFIKGTWPNGERNLLEPHG--VEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHH--HHHTTCCEEEEESSCCSSCCHHHHHHGGGT--CEEEECCTTCCCCGGGHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCCCCCccHHHHHHhCC--cEEEEcccccccCCCCcHHHHHH
Confidence 45667777779999999554442 222222444554332 233444443331 10 00000 011
Q ss_pred HHHHHHHHHHHhCCCeE-EEEEcCCCC---CCccchhhhhhhccCCCCCeEEEEEcCCh
Q 005860 262 LNSLLESIRASLVGKKF-LLILDDMWT---DDYSKWEPFHYCLKNGVRGSKILVTTRKE 316 (673)
Q Consensus 262 ~~~~~~~l~~~l~~kr~-LlVLDdvw~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 316 (673)
........++.+.+.+| |||||++-. -..-..+.+...+.......-||+|+|..
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 12334456666665555 999999811 11223455555665555667899999975
No 247
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.62 E-value=0.0073 Score=69.23 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=38.1
Q ss_pred CcceechhhHHHHHHHhccCCc-cc-----ccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESS-EE-----IINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~-~~-----~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+++|.+..+++|.+++...-. +. +......|.|+|++|+||||||+.+.+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 5789999999988887743100 00 0123456899999999999999999885
No 248
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.57 E-value=0.0081 Score=68.81 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=37.2
Q ss_pred CcceechhhHHHHHHHhccCCcc--cccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSE--EIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..++|.+..++.+...+...... ........+.++|++|+|||++|+.+.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 35889998888887766432100 00123457899999999999999999884
No 249
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.56 E-value=0.024 Score=57.98 Aligned_cols=82 Identities=18% Similarity=0.130 Sum_probs=52.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCC-----CcCcHHHHHHHHHH
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVP-----TVGELNSLLESIRA 271 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 271 (673)
-.++.|+|.+|+||||||.++... ....=..++|++....++.. ..+.++.... ...+.++....+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 468999999999999999887753 22222468899988766653 2444443211 12345555555555
Q ss_pred HhC-CCeEEEEEcCC
Q 005860 272 SLV-GKKFLLILDDM 285 (673)
Q Consensus 272 ~l~-~kr~LlVLDdv 285 (673)
..+ .+.-+||+|.+
T Consensus 134 l~~~~~~~lIVIDsl 148 (349)
T 2zr9_A 134 LVRSGALDIIVIDSV 148 (349)
T ss_dssp HHTTTCCSEEEEECG
T ss_pred HHhcCCCCEEEEcCh
Confidence 543 34568999988
No 250
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.48 E-value=0.0063 Score=62.14 Aligned_cols=50 Identities=26% Similarity=0.361 Sum_probs=35.9
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+.++|.+..++.+...+...... ......+.|+|++|+||||||+.+.+.
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~--~~~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMR--GEVLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHH--TCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 46788887777776665432100 122457899999999999999999984
No 251
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.45 E-value=0.012 Score=61.08 Aligned_cols=52 Identities=27% Similarity=0.312 Sum_probs=37.8
Q ss_pred CcceechhhHHHHHHHhccC---Cc---ccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCE---SS---EEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~---~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+++-|.++.+++|.+.+... .. .-+....+-|.++|++|.|||.||+++.+.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH
Confidence 47889999888887765321 10 001233567899999999999999999985
No 252
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.42 E-value=0.0071 Score=54.97 Aligned_cols=20 Identities=40% Similarity=0.722 Sum_probs=18.7
Q ss_pred EEEEEEccCCChHHHHHHHH
Q 005860 198 QIITIVGMGGIGKTTLAQFA 217 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v 217 (673)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37999999999999999999
No 253
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.38 E-value=0.0083 Score=55.57 Aligned_cols=24 Identities=33% Similarity=0.373 Sum_probs=21.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-.+|+|+|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999884
No 254
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.27 E-value=0.036 Score=55.78 Aligned_cols=45 Identities=18% Similarity=0.145 Sum_probs=30.2
Q ss_pred eechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhc
Q 005860 172 RGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 172 vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
+|-...+..+...+..... .....+|+|.|..|+||||||+.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~~---~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPE---PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCC---CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCC---CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3333444444444443321 24578999999999999999988866
No 255
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.25 E-value=0.027 Score=55.57 Aligned_cols=51 Identities=22% Similarity=0.347 Sum_probs=32.0
Q ss_pred CcceechhhHHHHHHHhccCCcc-c-----c-cCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSE-E-----I-INDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~-~-----~-~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.++.|.++.+++|.+.+...-.. . + ..... +.|+|++|+||||||+.+...
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH
Confidence 45777777777776544211000 0 0 01122 999999999999999999984
No 256
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.23 E-value=0.024 Score=60.79 Aligned_cols=53 Identities=25% Similarity=0.298 Sum_probs=34.8
Q ss_pred CCcceechhhHHHHHHHhccCCccc-----ccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 168 VSEIRGRDEEKSSLKSKLLCESSEE-----IINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~-----~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-.+++|.++.++++.+....-..+. +..-.+-|.|+|++|+||||||+++...
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3579999988777665542110000 0001123899999999999999999985
No 257
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.13 E-value=0.0079 Score=61.33 Aligned_cols=43 Identities=23% Similarity=0.018 Sum_probs=29.2
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCe-EEEEEcCCccc
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDK-RMWVCVSDPFD 240 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~ 240 (673)
-..++|+|..|+|||||++.+.+.... .+=+. ++++-+.+...
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~-~~~~v~~I~~lIGER~~ 217 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAY-NHPDCVLMVLLIDERPE 217 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHH-HCTTSEEEEEEESSCHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhh-cCCCeeEEEEEecCChH
Confidence 357999999999999999988774211 11222 45677776543
No 258
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.12 E-value=0.0094 Score=54.47 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+|.|+|++|+||||+|+.+.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999874
No 259
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.12 E-value=0.01 Score=54.57 Aligned_cols=24 Identities=13% Similarity=0.402 Sum_probs=21.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-.+++|+|+.|+|||||++.+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 358999999999999999998763
No 260
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.11 E-value=0.012 Score=60.02 Aligned_cols=43 Identities=16% Similarity=0.137 Sum_probs=36.0
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+.++|++..++.+...+.... -+.++|.+|+|||+||+.+.+.
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~---------~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG---------HILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC---------CEEEESCCCHHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcCC---------eEEEECCCCCcHHHHHHHHHHH
Confidence 468999999988888776532 4889999999999999999884
No 261
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.10 E-value=0.055 Score=55.38 Aligned_cols=89 Identities=20% Similarity=0.172 Sum_probs=50.3
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcCccccccC----CeEEEEEcCCcccHHHHHHHHHHHhhCCC------------CCc
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYNDSDVFEYF----DKRMWVCVSDPFDELRIAKAIIEALEGFV------------PTV 259 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------------~~~ 259 (673)
.-.++.|+|..|+|||||+..+.......... ..++|++....+....+ ..+.+..+... ...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 45799999999999999998887642111111 24589987665544433 22333332110 001
Q ss_pred CcHHHHHHHHHHHhC------CCeEEEEEcCC
Q 005860 260 GELNSLLESIRASLV------GKKFLLILDDM 285 (673)
Q Consensus 260 ~~~~~~~~~l~~~l~------~kr~LlVLDdv 285 (673)
....++...+...+. .+.-+||+|.+
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ 240 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSL 240 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETS
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCc
Confidence 112233344444443 46778999987
No 262
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.07 E-value=0.0097 Score=53.93 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998763
No 263
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.04 E-value=0.022 Score=56.61 Aligned_cols=26 Identities=27% Similarity=0.255 Sum_probs=22.9
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
....+|+|+|..|+||||||+.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999888774
No 264
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.01 E-value=0.011 Score=53.95 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 005860 198 QIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999887
No 265
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.00 E-value=0.0096 Score=55.69 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+|.|+|+.|+||||+|+.+.+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999873
No 266
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.99 E-value=0.011 Score=58.15 Aligned_cols=53 Identities=23% Similarity=0.226 Sum_probs=35.6
Q ss_pred CCcceechhhHHHHHHHhccCCccc-----ccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 168 VSEIRGRDEEKSSLKSKLLCESSEE-----IINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~-----~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-.+++|.+..++.+.+.+..-..+. +....+-+.|+|++|+|||+||+.+++.
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 3579999988888777653100000 0011223779999999999999999985
No 267
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.97 E-value=0.013 Score=53.37 Aligned_cols=23 Identities=26% Similarity=0.677 Sum_probs=20.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
-.+++|+|+.|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46999999999999999997554
No 268
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.96 E-value=0.014 Score=54.65 Aligned_cols=24 Identities=33% Similarity=0.349 Sum_probs=22.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+|+|+|+.|+||||+|+.+...
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999999874
No 269
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.96 E-value=0.054 Score=56.37 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=36.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccc----cCCeEEEEEcCCcccHHHHHHHHHHHhhC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFE----YFDKRMWVCVSDPFDELRIAKAIIEALEG 254 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 254 (673)
-.++.|+|.+|+|||||+..++-...... .-..++|++....++...+ ..+.+.++.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl 238 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGL 238 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCC
Confidence 35899999999999999986542111111 2346889987776665543 335555543
No 270
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.91 E-value=0.05 Score=57.31 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=33.3
Q ss_pred EEEEEccCCChHHHHHHHHhcCccccccC-CeEEEEEcCCccc-HHHHHHHHH
Q 005860 199 IITIVGMGGIGKTTLAQFAYNDSDVFEYF-DKRMWVCVSDPFD-ELRIAKAII 249 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~-~~~~~~~i~ 249 (673)
.++|+|..|+|||||++.+..+ ....+ +.++++-+.+..+ ..++..++.
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~--~~~~~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHN--IAQEHGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHH--HHHHTCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhh--hhhccCcEEEEeeeccCchHHHHHHHHhh
Confidence 5899999999999999988775 22222 4567777776543 334444443
No 271
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.91 E-value=0.016 Score=62.23 Aligned_cols=43 Identities=16% Similarity=0.115 Sum_probs=36.1
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..++|.+..++.+...+..+. -|.|+|++|+|||+||+.+.+.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~---------~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE---------SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC---------EEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHhcCC---------eeEeecCchHHHHHHHHHHHHH
Confidence 358899999988887776443 4789999999999999999985
No 272
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.90 E-value=0.011 Score=53.82 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.7
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+|+|+|+.|+||||+++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998873
No 273
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.84 E-value=0.013 Score=54.83 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+++|+|+.|+|||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 58999999999999999998763
No 274
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.83 E-value=0.015 Score=54.88 Aligned_cols=25 Identities=40% Similarity=0.329 Sum_probs=22.1
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...+|+|+|+.|+|||||++.+...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999998873
No 275
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.78 E-value=0.016 Score=53.63 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.2
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 005860 198 QIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5799999999999999999975
No 276
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.77 E-value=0.016 Score=52.80 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
..+|+|+|+.|+||||+++.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 47899999999999999999876
No 277
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.76 E-value=0.015 Score=53.28 Aligned_cols=22 Identities=41% Similarity=0.513 Sum_probs=19.9
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.++|+|+.|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988875
No 278
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.70 E-value=0.018 Score=54.11 Aligned_cols=25 Identities=40% Similarity=0.412 Sum_probs=22.5
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...+|+|+|+.|+||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999999874
No 279
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.70 E-value=0.025 Score=57.29 Aligned_cols=46 Identities=20% Similarity=0.099 Sum_probs=32.2
Q ss_pred eechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 172 RGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 172 vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
|+.+.-.+++++.+...-. .+....|.|+|+.|+||||+++.+...
T Consensus 2 ~~~~~L~~~il~~l~~~i~---~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE---DNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT---TCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc---cCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 4455566666666642211 134567999999999999999988874
No 280
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.66 E-value=0.012 Score=54.45 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.7
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999864
No 281
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.65 E-value=0.013 Score=53.86 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=21.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+.|.|+|+.|+||||+|+.+.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999773
No 282
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.62 E-value=0.02 Score=59.11 Aligned_cols=51 Identities=22% Similarity=0.241 Sum_probs=35.8
Q ss_pred cceechhhHHHHHHHhccC-------Cc-ccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 170 EIRGRDEEKSSLKSKLLCE-------SS-EEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~-------~~-~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.++|.+..++.+...+... .. .........|.++|++|+|||++|+.+.+.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4789998888888777210 00 000112456899999999999999999984
No 283
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.62 E-value=0.016 Score=54.13 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=21.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+|+|+|+.|+|||||++.+...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999773
No 284
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.60 E-value=0.022 Score=55.49 Aligned_cols=51 Identities=25% Similarity=0.315 Sum_probs=33.1
Q ss_pred CcceechhhHHHHHHHhccCCccc-----c-cCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEE-----I-INDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~-----~-~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
++++|.+..+.++.+....-.... + ..... +.|+|++|+||||||+.+++.
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHH
Confidence 468898877666655432110000 0 01122 899999999999999999985
No 285
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.60 E-value=0.018 Score=53.21 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+|.|.|++|+||||+|+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999998763
No 286
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.58 E-value=0.016 Score=54.54 Aligned_cols=24 Identities=29% Similarity=0.546 Sum_probs=21.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+|+|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999999875
No 287
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.58 E-value=0.016 Score=53.48 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.8
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999874
No 288
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.58 E-value=0.029 Score=55.79 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.2
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhc
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
....+|.|.|++|+||||+|+.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999876
No 289
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.52 E-value=0.079 Score=55.92 Aligned_cols=87 Identities=15% Similarity=0.071 Sum_probs=54.6
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCccc-HHHHHHHHHHHhhCC--------------CCCcC--
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFD-ELRIAKAIIEALEGF--------------VPTVG-- 260 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~--------------~~~~~-- 260 (673)
.-++|+|..|+|||+|++.+.++. .+.+-+.++|+-+.+..+ ..++..++.+.=... ..+..
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~ 244 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPG 244 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHH
Confidence 468999999999999998877741 123457888998888764 455666665431111 00000
Q ss_pred ---cHHHHHHHHHHHh---CCCeEEEEEcCC
Q 005860 261 ---ELNSLLESIRASL---VGKKFLLILDDM 285 (673)
Q Consensus 261 ---~~~~~~~~l~~~l---~~kr~LlVLDdv 285 (673)
-.....-.+.+++ +++.+||++||+
T Consensus 245 ~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 245 ARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp HHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 0112233344555 468999999998
No 290
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.50 E-value=0.014 Score=54.73 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.2
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+|.|.|+.|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999998774
No 291
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.49 E-value=0.02 Score=53.68 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=20.3
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 005860 198 QIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 292
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.48 E-value=0.028 Score=54.03 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=26.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEE
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWV 233 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 233 (673)
-.+++|+|+.|+|||||.+.+..- .....+.+++
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl---~~p~~G~I~~ 64 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCL---DKPTEGEVYI 64 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS---SCCSEEEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC---CCCCceEEEE
Confidence 358999999999999999999884 2334455655
No 293
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.47 E-value=0.019 Score=53.54 Aligned_cols=26 Identities=35% Similarity=0.320 Sum_probs=23.0
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+...+|+|+|+.|+||||+|+.+.+.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34689999999999999999999873
No 294
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.44 E-value=0.018 Score=53.91 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+|+|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999998874
No 295
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.43 E-value=0.021 Score=57.44 Aligned_cols=26 Identities=27% Similarity=0.206 Sum_probs=22.8
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
....+|+|+|..|+|||||++.+..-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 34679999999999999999998873
No 296
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.43 E-value=0.017 Score=54.06 Aligned_cols=21 Identities=38% Similarity=0.442 Sum_probs=19.7
Q ss_pred EEEEEccCCChHHHHHHHHhc
Q 005860 199 IITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (673)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999876
No 297
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.43 E-value=0.09 Score=52.55 Aligned_cols=87 Identities=18% Similarity=0.184 Sum_probs=45.7
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHH--HHHHHHHHHhhCC---CCCcCcHHHH-HHHH
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDEL--RIAKAIIEALEGF---VPTVGELNSL-LESI 269 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~i~~~l~~~---~~~~~~~~~~-~~~l 269 (673)
...+|.|+|.+|+||||++..+.... ...-..+.++.. +.+... +-+...++..+.. .....+.... ...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l--~~~g~kV~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF--VDEGKSVVLAAA-DTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH--HHTTCCEEEEEE-CTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH--HhcCCEEEEEcc-ccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 46899999999999999998887642 222123444443 223322 2233344444322 1112222222 2334
Q ss_pred HHHhCCCeEEEEEcCC
Q 005860 270 RASLVGKKFLLILDDM 285 (673)
Q Consensus 270 ~~~l~~kr~LlVLDdv 285 (673)
...+....-++++|-.
T Consensus 180 ~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 180 AHALARNKDVVIIDTA 195 (306)
T ss_dssp HHHHHTTCSEEEEEEC
T ss_pred HHHHhcCCCEEEEECC
Confidence 4444444457888865
No 298
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.42 E-value=0.029 Score=53.48 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+++|+|+.|+|||||.+.+..-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999884
No 299
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.39 E-value=0.018 Score=53.12 Aligned_cols=23 Identities=30% Similarity=0.712 Sum_probs=20.8
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+|.|.|+.|+||||+|+.+.+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998873
No 300
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.37 E-value=0.015 Score=54.32 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=20.2
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 005860 198 QIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999998876
No 301
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.36 E-value=0.03 Score=55.14 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=25.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEE
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWV 233 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 233 (673)
.+++|+|+.|+|||||++.+..- .....+.+++
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl---~~p~~G~I~~ 67 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI---LKPSSGRILF 67 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS---SCCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcC---CCCCCeEEEE
Confidence 58999999999999999999884 2233445444
No 302
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.35 E-value=0.028 Score=54.76 Aligned_cols=41 Identities=20% Similarity=0.189 Sum_probs=28.4
Q ss_pred HHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 178 KSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+++...+...... .....+|.|+|++|+||||+|+.+...
T Consensus 15 ~~~~~~~~~~~~~~--~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 15 LARNLRSLTRGKKS--SKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp HHHHHHHHHTTCCC--CSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHccCCc--ccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34444444443321 244679999999999999999998763
No 303
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.35 E-value=0.018 Score=54.86 Aligned_cols=22 Identities=41% Similarity=0.513 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 005860 198 QIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 304
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.35 E-value=0.014 Score=53.68 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=19.8
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+.|.|+|++|+|||||++.+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 34789999999999999998763
No 305
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.35 E-value=0.019 Score=53.69 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.1
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999998873
No 306
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.33 E-value=0.021 Score=55.66 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=21.8
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhc
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
....+|+|.|+.|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999998877
No 307
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.31 E-value=0.02 Score=55.74 Aligned_cols=23 Identities=26% Similarity=0.195 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+|.|+|+.|+||||||+.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999998763
No 308
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.31 E-value=0.029 Score=54.03 Aligned_cols=33 Identities=12% Similarity=0.169 Sum_probs=26.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEE
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWV 233 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 233 (673)
.+++|+|+.|+|||||.+.+..- .....+.+++
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl---~~p~~G~i~~ 57 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI---VKPDRGEVRL 57 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS---SCCSEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHhCC---CCCCceEEEE
Confidence 68999999999999999999984 2233455555
No 309
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.31 E-value=0.015 Score=59.55 Aligned_cols=45 Identities=24% Similarity=0.234 Sum_probs=32.8
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
++++|.+..++.+...+.... ..-|.|+|.+|+|||+||+.+.+.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~-------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG-------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG-------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC-------CceEEEECCCCccHHHHHHHHHHh
Confidence 468999886665544443322 123889999999999999999874
No 310
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.29 E-value=0.11 Score=54.36 Aligned_cols=24 Identities=33% Similarity=0.275 Sum_probs=21.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+|.|+|.+|+||||++..+...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999887764
No 311
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.28 E-value=0.027 Score=50.38 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=21.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-.+++|+|+.|+|||||++.+..-
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 469999999999999999998873
No 312
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.28 E-value=0.022 Score=53.61 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=21.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-.+++|+|+.|+|||||++.+..-
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 458999999999999999998773
No 313
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.26 E-value=0.024 Score=53.01 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=22.6
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
....+|+|.|+.|+||||+|+.+.+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999999998863
No 314
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.24 E-value=0.015 Score=54.49 Aligned_cols=25 Identities=28% Similarity=0.499 Sum_probs=21.8
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...+|.|+|++|+|||||++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999998764
No 315
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.23 E-value=0.033 Score=54.47 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=26.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEE
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWV 233 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 233 (673)
-.+++|+|+.|+|||||.+.+..- .....+.+++
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl---~~p~~G~i~~ 65 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFL---EKPSEGAIIV 65 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS---SCCSEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC---CCCCCcEEEE
Confidence 358999999999999999999984 2334456655
No 316
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.21 E-value=0.088 Score=53.29 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=36.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHh
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEAL 252 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 252 (673)
-.++.|.|.+|+||||||..+.... ..+=..++|++.- .+..++...++...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~--a~~g~~Vl~fSlE--ms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSA--LNDDRGVAVFSLE--MSAEQLALRALSDL 97 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHH--HHTTCEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH--HHcCCeEEEEeCC--CCHHHHHHHHHHHh
Confidence 3588999999999999998777642 2222456777653 45667777776554
No 317
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.20 E-value=0.023 Score=52.61 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=21.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999988763
No 318
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.19 E-value=0.026 Score=54.70 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=21.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
..+|+|.|+.|+|||||++.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998876
No 319
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.19 E-value=0.027 Score=55.65 Aligned_cols=52 Identities=25% Similarity=0.310 Sum_probs=34.0
Q ss_pred CCcceechhhHHHHHHHhccCCccc-----c-cCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 168 VSEIRGRDEEKSSLKSKLLCESSEE-----I-INDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~-----~-~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-++++|.++.++++.+....-.... + ..... +.|+|++|+||||||+.+...
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH
Confidence 3578998887766665442110000 0 01123 899999999999999999985
No 320
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.19 E-value=0.016 Score=53.09 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+|.|+|++|+||||+|+.+.+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 457889999999999999998863
No 321
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.18 E-value=0.021 Score=52.60 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=21.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
..+|+|+|+.|+||||+|+.+.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999877
No 322
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.16 E-value=0.038 Score=54.18 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=26.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEE
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWV 233 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 233 (673)
.+++|+|+.|+|||||++.+..- .....+.+++
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl---~~p~~G~I~~ 70 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY---LSPSHGECHL 70 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS---SCCSSCEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhcC---CCCCCcEEEE
Confidence 58999999999999999999984 2334566665
No 323
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.15 E-value=0.022 Score=51.37 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=21.2
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+|+|.|+.|+||||+|+.+.+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999998773
No 324
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.14 E-value=0.17 Score=52.99 Aligned_cols=25 Identities=40% Similarity=0.251 Sum_probs=21.9
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...+|.++|.+|+||||++..+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999877764
No 325
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.14 E-value=0.027 Score=51.89 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=22.3
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...+|.|+|++|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999874
No 326
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.12 E-value=0.024 Score=54.97 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=20.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
..+|+|+|+.|+|||||++.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
No 327
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.10 E-value=0.026 Score=56.81 Aligned_cols=25 Identities=28% Similarity=0.503 Sum_probs=20.4
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhc
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
.+.+||+|.|-|||||||.|-.+.-
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 4579999999999999999855544
No 328
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.10 E-value=0.019 Score=52.30 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+|.|+|++|+||||+|+.+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 329
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.05 E-value=0.028 Score=51.61 Aligned_cols=23 Identities=30% Similarity=0.254 Sum_probs=20.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
..+|.|.|+.|+||||+|+.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999876
No 330
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.05 E-value=0.039 Score=53.21 Aligned_cols=33 Identities=27% Similarity=0.330 Sum_probs=26.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEE
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWV 233 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 233 (673)
.+++|+|+.|+|||||.+.+..- .....+.+++
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl---~~p~~G~i~~ 65 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL---VRAQKGKIIF 65 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS---SCCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCCceEEE
Confidence 58999999999999999999984 2333455555
No 331
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.04 E-value=0.033 Score=52.55 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+++|+|+.|+|||||.+.+..-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999884
No 332
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.03 E-value=0.051 Score=55.08 Aligned_cols=108 Identities=14% Similarity=0.120 Sum_probs=57.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCCe
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGKK 277 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 277 (673)
.+++|+|..|+|||||++.+.... ..-.+.+.+.-......... . +.+..-. + .-......+...|..++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~---~~~~g~i~i~~~~e~~~~~~-~---~~i~~~~-g--gg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI---PKEERIISIEDTEEIVFKHH-K---NYTQLFF-G--GNITSADCLKSCLRMRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS---CTTSCEEEEESSCCCCCSSC-S---SEEEEEC-B--TTBCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---cCCCcEEEECCeeccccccc-h---hEEEEEe-C--CChhHHHHHHHHhhhCC
Confidence 479999999999999999998842 12245555542211110000 0 0000000 0 11223456667777788
Q ss_pred EEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCChhHHH
Q 005860 278 FLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKETVAR 320 (673)
Q Consensus 278 ~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 320 (673)
=+|++|.+.+ ...++.+. .+..+ +.-+|+||...+...
T Consensus 242 ~ilildE~~~--~e~~~~l~-~~~~g--~~tvi~t~H~~~~~~ 279 (330)
T 2pt7_A 242 DRIILGELRS--SEAYDFYN-VLCSG--HKGTLTTLHAGSSEE 279 (330)
T ss_dssp SEEEECCCCS--THHHHHHH-HHHTT--CCCEEEEEECSSHHH
T ss_pred CEEEEcCCCh--HHHHHHHH-HHhcC--CCEEEEEEcccHHHH
Confidence 8999999954 23344333 23222 223777777655443
No 333
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.02 E-value=0.025 Score=51.09 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.++++|+|..|+|||||+..+...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999999888874
No 334
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.01 E-value=0.022 Score=52.77 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=21.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998763
No 335
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.01 E-value=0.039 Score=53.90 Aligned_cols=34 Identities=15% Similarity=0.335 Sum_probs=25.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEE
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWV 233 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 233 (673)
-.+++|+|+.|+|||||++.+..-. ....+.+++
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~---~p~~G~I~~ 83 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE---DFDEGEIII 83 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS---CCSEEEEEE
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC---CCCCcEEEE
Confidence 3589999999999999999998842 233445554
No 336
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.98 E-value=0.04 Score=53.32 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=25.7
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEE
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWV 233 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 233 (673)
.+++|+|+.|+|||||++.+..-. ....+.+++
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~I~i 68 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY---IPENGQVLI 68 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS---CCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEE
Confidence 589999999999999999998842 233455554
No 337
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.96 E-value=0.04 Score=53.69 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=25.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEE
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWV 233 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 233 (673)
.+++|+|+.|+|||||.+.+..-. ....+.+++
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~---~p~~G~i~~ 66 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL---KADEGRVYF 66 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS---CCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEE
Confidence 589999999999999999998842 233455555
No 338
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.95 E-value=0.041 Score=53.54 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-.+++|+|+.|+|||||.+.+..-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999884
No 339
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.92 E-value=0.024 Score=52.66 Aligned_cols=25 Identities=12% Similarity=0.470 Sum_probs=21.8
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..++|+|+|+.|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3568999999999999999988763
No 340
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.92 E-value=0.042 Score=52.23 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.8
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...+|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3688999999999999999887764
No 341
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.91 E-value=0.042 Score=53.07 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-.+++|+|+.|+|||||.+.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999874
No 342
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.91 E-value=0.023 Score=53.91 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=21.2
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-.+++|+|+.|+|||||++.+...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 358999999999999999998773
No 343
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.89 E-value=0.028 Score=54.96 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=21.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999998873
No 344
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.89 E-value=0.087 Score=50.05 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=30.6
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccc--c-c-cCCeEEEEEcCCcccH
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDV--F-E-YFDKRMWVCVSDPFDE 241 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~--~-~-~F~~~~wv~vs~~~~~ 241 (673)
-.+++|+|++|+|||||++.+...... . . .-...+|+.-...+..
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 479999999999999999998752111 1 1 1345788876544333
No 345
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.88 E-value=0.042 Score=53.98 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-.+++|+|+.|+|||||++.+..-
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999884
No 346
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.87 E-value=0.16 Score=51.81 Aligned_cols=54 Identities=20% Similarity=0.052 Sum_probs=34.1
Q ss_pred HHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCe-EEEEEcCCcc
Q 005860 179 SSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDK-RMWVCVSDPF 239 (673)
Q Consensus 179 ~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~ 239 (673)
-++++.|..-. .-..++|+|..|+|||+|++.+.+.... .+=+. ++++-+.+..
T Consensus 163 iraID~l~Pig------rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~-~~~dv~~V~~lIGER~ 217 (427)
T 3l0o_A 163 TRLIDLFAPIG------KGQRGMIVAPPKAGKTTILKEIANGIAE-NHPDTIRIILLIDERP 217 (427)
T ss_dssp HHHHHHHSCCB------TTCEEEEEECTTCCHHHHHHHHHHHHHH-HCTTSEEEEEECSCCH
T ss_pred chhhhhccccc------CCceEEEecCCCCChhHHHHHHHHHHhh-cCCCeEEEEEEeccCc
Confidence 45566664322 2346899999999999999888874211 12232 3566666643
No 347
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.86 E-value=0.029 Score=54.63 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=21.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
..+|+|+|+.|+||||+++.+.+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999985
No 348
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.85 E-value=0.15 Score=54.04 Aligned_cols=42 Identities=26% Similarity=0.301 Sum_probs=29.7
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCccc
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFD 240 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 240 (673)
...+++|+|.+|+|||||++.+.... . .-.+.+++.-.+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll--~-~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF--E-QQGKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH--H-HTTCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh--h-hcCCeEEEecCcccc
Confidence 45799999999999999999888742 1 224555555444444
No 349
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.85 E-value=0.024 Score=56.61 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.2
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+.+.++|++|+|||+||+++++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567889999999999999999985
No 350
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.85 E-value=0.29 Score=49.10 Aligned_cols=52 Identities=15% Similarity=0.075 Sum_probs=36.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHh
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEAL 252 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 252 (673)
-.++.|.|.+|+||||||..+..+.... . ..++|++.. .+..++...++...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~-g-~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDN-D-DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTT-T-CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc-C-CeEEEEECC--CCHHHHHHHHHHHH
Confidence 4689999999999999997776542111 2 567888765 35666777766553
No 351
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.83 E-value=0.021 Score=52.41 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.9
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+|.|+|++|+||||+|+.+...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998773
No 352
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.82 E-value=0.029 Score=51.70 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+|+|.|+.|+||||+|+.+.+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998773
No 353
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.80 E-value=0.027 Score=52.27 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+|+|.|+.|+||||+|+.+.+.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998873
No 354
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.79 E-value=0.031 Score=51.80 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.9
Q ss_pred CeEEEEEEccCCChHHHHHHHHhc
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
.-.+|+|+|+.|+||||+|+.+.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999877
No 355
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.79 E-value=0.03 Score=52.58 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+|.|.|+.|+||||+|+.+.+.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 356
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.79 E-value=0.029 Score=50.57 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.9
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998873
No 357
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.78 E-value=0.0048 Score=56.96 Aligned_cols=22 Identities=27% Similarity=0.101 Sum_probs=17.9
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 005860 198 QIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
.++.|+|+.|+||||++..+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999844443
No 358
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.77 E-value=0.032 Score=50.93 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=21.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+|+|+|+.|+||||+++.+...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998773
No 359
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.75 E-value=0.046 Score=53.56 Aligned_cols=34 Identities=24% Similarity=0.215 Sum_probs=25.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEE
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWV 233 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 233 (673)
-.+++|+|+.|+|||||.+.+..- .....+.+++
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl---~~p~~G~I~~ 66 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGL---IEPTSGDVLY 66 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS---SCCSEEEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC---CCCCCcEEEE
Confidence 358999999999999999999884 2233455554
No 360
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.74 E-value=0.029 Score=53.23 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.9
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.-.+++|+|+.|+|||||.+.+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999999998774
No 361
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.71 E-value=0.18 Score=50.20 Aligned_cols=24 Identities=33% Similarity=0.275 Sum_probs=21.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+++|+|.+|+||||++..+...
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999888874
No 362
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.68 E-value=0.042 Score=52.01 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=22.0
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...+|.|+|.+|+|||||+..+...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999999887764
No 363
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.67 E-value=0.026 Score=51.17 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+|.|.|+.|+||||+|+.+.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998773
No 364
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.67 E-value=0.03 Score=51.70 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=20.1
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 365
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.66 E-value=0.036 Score=52.39 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=23.3
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...+||.|.|++|+||||.|+.+.+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999998874
No 366
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.65 E-value=0.028 Score=51.93 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+++|+|+.|+|||||++.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999888874
No 367
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.63 E-value=0.031 Score=52.15 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=21.2
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998773
No 368
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.60 E-value=0.27 Score=51.69 Aligned_cols=53 Identities=21% Similarity=0.201 Sum_probs=38.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCccc-HHHHHHHHHHH
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFD-ELRIAKAIIEA 251 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~ 251 (673)
.-++|+|..|+|||+|++.+.+.. .+.+-+.++++-+.+..+ +.++.+++.+.
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 468999999999999998877641 123446788888887654 45566666654
No 369
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.60 E-value=0.03 Score=56.00 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=21.9
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...+|+|+|++|+|||||++.+..-
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3569999999999999999988864
No 370
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.57 E-value=0.052 Score=53.56 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=26.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEE
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWV 233 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 233 (673)
.+++|+|+.|+|||||.+.+..-. ....+.+++
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~---~p~~G~I~~ 80 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE---PATSGTVNL 80 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS---CCSEEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC---CCCCeEEEE
Confidence 589999999999999999999842 233456655
No 371
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.55 E-value=0.066 Score=46.03 Aligned_cols=46 Identities=15% Similarity=0.154 Sum_probs=32.8
Q ss_pred cchh--hhccccccccccccceecCCCCcccchh-hhcCCCccEEEeccCC
Q 005860 560 NSTN--KILKGIEKLIHLRYLRLVGLGTEELPET-CCELLNLQVLEIEQCT 607 (673)
Q Consensus 560 ~~~~--~lp~~i~~L~~Lr~L~L~~~~i~~LP~~-i~~L~~L~~L~l~~c~ 607 (673)
..++ .+|..+. .+|++|+|++|.|..||.. +..|++|++|+|++++
T Consensus 18 ~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 18 RGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp SCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 5565 6676543 3578888888888888754 5667888888888755
No 372
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.51 E-value=0.17 Score=50.27 Aligned_cols=87 Identities=18% Similarity=0.045 Sum_probs=44.6
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCc-ccHHHHHHHHHHHhhCC---CCCcCcHHHHHHHHHHH
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDP-FDELRIAKAIIEALEGF---VPTVGELNSLLESIRAS 272 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~---~~~~~~~~~~~~~l~~~ 272 (673)
..+|+++|.+|+||||++..+.... ...-..+.++..... ....+.+....+..+.. .....+..++.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~--~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY--KKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH--HHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 5789999999999999998877642 222223555554321 12223333344443332 11112333333333333
Q ss_pred hC-CCeEEEEEcCC
Q 005860 273 LV-GKKFLLILDDM 285 (673)
Q Consensus 273 l~-~kr~LlVLDdv 285 (673)
++ ..-=++++|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 43 22236777764
No 373
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.51 E-value=0.025 Score=51.76 Aligned_cols=24 Identities=38% Similarity=0.311 Sum_probs=17.2
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999998763
No 374
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.50 E-value=0.2 Score=52.57 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.1
Q ss_pred CeEEEEEEccCCChHHHHHHHHhc
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
...+|.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 468999999999999999877765
No 375
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.48 E-value=0.041 Score=54.48 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=21.6
Q ss_pred CeEEEEEEccCCChHHHHHHHHhc
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999873
No 376
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.47 E-value=0.051 Score=52.48 Aligned_cols=25 Identities=20% Similarity=0.092 Sum_probs=21.9
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...+|.|.|+.|+||||+|+.+.+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998763
No 377
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.45 E-value=0.042 Score=54.96 Aligned_cols=25 Identities=36% Similarity=0.361 Sum_probs=22.2
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...+++|+|+.|+||||+++.+...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3579999999999999999888874
No 378
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.44 E-value=0.057 Score=55.97 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.7
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+.++|++|+|||++|+.+.+.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999999884
No 379
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.43 E-value=0.037 Score=53.48 Aligned_cols=39 Identities=26% Similarity=0.306 Sum_probs=26.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVS 236 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 236 (673)
-.+++|+|+.|+|||||++.+...-.. ..-...+++...
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~-~~~~~~~~~~~~ 68 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAE-EYGEPGVFVTLE 68 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHH-HHCCCEEEEESS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEEcc
Confidence 368999999999999999988742110 122445666543
No 380
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.43 E-value=0.031 Score=52.50 Aligned_cols=23 Identities=35% Similarity=0.310 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+++|+|+.|+|||||++.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999988763
No 381
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.41 E-value=0.023 Score=51.54 Aligned_cols=23 Identities=39% Similarity=0.407 Sum_probs=20.8
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988874
No 382
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.36 E-value=0.043 Score=55.12 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.9
Q ss_pred CeEEEEEEccCCChHHHHHHHHhc
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
...+|+|+|..|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999887
No 383
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.32 E-value=0.035 Score=52.23 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+|+|.|+.|+||||+|+.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999874
No 384
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.29 E-value=0.038 Score=51.15 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=20.1
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998874
No 385
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.27 E-value=0.19 Score=52.90 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=21.4
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..++|.|+|.+|+||||++..+...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999777653
No 386
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.26 E-value=0.061 Score=52.06 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=21.4
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+++|+|+.|+|||||.+.+..-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999984
No 387
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.25 E-value=0.029 Score=53.74 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=16.0
Q ss_pred EEEEEEccCCChHHHHHHHHh-cC
Q 005860 198 QIITIVGMGGIGKTTLAQFAY-ND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~-~~ 220 (673)
.+++|+|+.|+|||||++.+. ..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 589999999999999999998 53
No 388
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.22 E-value=0.039 Score=51.84 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=21.6
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+|+|.|+.|+||||+|+.+.+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 389
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.19 E-value=0.05 Score=51.47 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999865
No 390
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=93.19 E-value=0.41 Score=48.64 Aligned_cols=119 Identities=9% Similarity=-0.038 Sum_probs=71.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHH-HHhCC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIR-ASLVG 275 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~ 275 (673)
..+..++|..|.||++.|+.+.+... ...|+....+.+....+++++ ...+. .-+-+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l---------------------~~~~~~~plf~ 75 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDWNAI---------------------FSLCQAMSLFA 75 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCHHHH---------------------HHHHHHHHHCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCHHHH---------------------HHHhcCcCCcc
Confidence 46889999999999999988877421 123433222233333333332 22222 12345
Q ss_pred CeEEEEEcCCCC-CCccchhhhhhhccCCCCCeEEEEEcCC-------hhHHHhc-cccceeecCCCCccc
Q 005860 276 KKFLLILDDMWT-DDYSKWEPFHYCLKNGVRGSKILVTTRK-------ETVARMM-ESIHVISIKELSEQE 337 (673)
Q Consensus 276 kr~LlVLDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtr~-------~~v~~~~-~~~~~~~l~~L~~~~ 337 (673)
++-++|+|++.. -....++.+...+....+++.+|++|.. ..+...+ .....++..+++.++
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~ 146 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQ 146 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHH
Confidence 566888999854 3445677888888766678888776643 2344332 234667777777654
No 391
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.19 E-value=0.047 Score=51.41 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=21.6
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+|.|.|+.|+||||+|+.+...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999998874
No 392
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.17 E-value=0.023 Score=53.51 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=20.1
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+|+|.|..|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998774
No 393
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.12 E-value=0.089 Score=45.19 Aligned_cols=54 Identities=20% Similarity=0.235 Sum_probs=43.8
Q ss_pred ccceecCCCCc--ccchhhhcCCCccEEEeccCCCCcccccc-ccccccCCeeecccccc
Q 005860 576 RYLRLVGLGTE--ELPETCCELLNLQVLEIEQCTSLKRLPLG-IGKLVNLRHLTYDDSCL 632 (673)
Q Consensus 576 r~L~L~~~~i~--~LP~~i~~L~~L~~L~l~~c~~l~~lP~~-i~~L~~Lr~L~l~~~~l 632 (673)
..++.++..++ .+|..+. .+|++|+|+++. |..+|.+ +..+.+|+.|++++|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence 36778888888 8886533 479999999966 9999875 68899999999988764
No 394
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.08 E-value=0.046 Score=53.04 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=21.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+++|+|+.|+|||||++.+..-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999984
No 395
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.07 E-value=0.043 Score=51.80 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.5
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998763
No 396
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.05 E-value=0.042 Score=52.39 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.2
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...|.|.|+.|+||||+|+.+.+.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998863
No 397
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.03 E-value=0.058 Score=53.86 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-.+++|+|+.|+|||||++.+..-
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 358999999999999999999874
No 398
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.02 E-value=0.087 Score=54.06 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.7
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhc
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
....+|+|+|.+|+|||||+..+..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999987764
No 399
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.00 E-value=0.22 Score=53.78 Aligned_cols=52 Identities=12% Similarity=-0.017 Sum_probs=36.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCcccccc-CCeEEEEEcCCcccHHHHHHHHHHHh
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEY-FDKRMWVCVSDPFDELRIAKAIIEAL 252 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~vs~~~~~~~~~~~i~~~l 252 (673)
-.++.|.|.+|+||||||..+..+ .... =..++|++... +..++...++...
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~--~a~~~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQ--WGTAMGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHH--HTTTSCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHH--HHHhcCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 468899999999999999777664 2222 23577887654 4567777665544
No 400
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.96 E-value=0.046 Score=50.99 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+|+|.|+.|+||||+++.+.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999885
No 401
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.96 E-value=0.049 Score=53.43 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-.+++|+|+.|+|||||++.+..-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999984
No 402
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.95 E-value=0.045 Score=51.85 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=20.7
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..|.|.|+.|+||||+|+.+.+.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998773
No 403
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.93 E-value=0.057 Score=54.60 Aligned_cols=25 Identities=36% Similarity=0.334 Sum_probs=22.3
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...+++|+|+.|+||||+++.+...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999888874
No 404
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.90 E-value=0.047 Score=51.55 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=19.1
Q ss_pred EEEEEccCCChHHHHHHHHhc
Q 005860 199 IITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (673)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 405
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.88 E-value=0.051 Score=53.07 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=21.5
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+++|+|+.|+|||||++.+..-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999985
No 406
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.88 E-value=0.04 Score=52.20 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=20.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...|.|.|+.|+||||+|+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999998774
No 407
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.85 E-value=0.077 Score=51.80 Aligned_cols=32 Identities=25% Similarity=0.425 Sum_probs=25.6
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEE
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWV 233 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 233 (673)
.+++|+|+.|+|||||.+.+..- . ...+.+++
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl---~-p~~G~I~~ 62 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL---L-PYSGNIFI 62 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS---S-CCEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHhCC---C-CCCcEEEE
Confidence 48999999999999999999984 2 34555555
No 408
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.80 E-value=0.04 Score=53.35 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.7
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+|+|+|+.|+||||+++.+...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999873
No 409
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.79 E-value=0.058 Score=55.18 Aligned_cols=25 Identities=36% Similarity=0.361 Sum_probs=22.3
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...+++|+|..|+||||+++.+...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4579999999999999999888874
No 410
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.76 E-value=0.05 Score=50.83 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=19.9
Q ss_pred EEEEEccCCChHHHHHHHHhc
Q 005860 199 IITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (673)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999877
No 411
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.75 E-value=0.054 Score=52.64 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=21.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+++|+|+.|+|||||.+.+..-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999884
No 412
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.73 E-value=0.053 Score=54.72 Aligned_cols=23 Identities=35% Similarity=0.351 Sum_probs=20.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+|+|.|+.|+||||||+.+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999998873
No 413
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.69 E-value=0.053 Score=49.30 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+++|+|..|+|||||++.+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 578999999999999999888874
No 414
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.61 E-value=0.042 Score=52.22 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=21.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...|.|.|+.|+||||+|+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999998874
No 415
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.57 E-value=0.065 Score=57.21 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+.|.|.+|+||||++.++...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 8999999999999999888774
No 416
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.47 E-value=0.58 Score=50.04 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=20.5
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhc
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
...++|.|+|.+|+||||++..+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999977774
No 417
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.44 E-value=0.31 Score=51.53 Aligned_cols=84 Identities=19% Similarity=0.162 Sum_probs=50.0
Q ss_pred EEEEEEccCCChHHHHH-HHHhcCccccccCCe-EEEEEcCCccc-HHHHHHHHHHHhhC-------CCCCcC-cHH---
Q 005860 198 QIITIVGMGGIGKTTLA-QFAYNDSDVFEYFDK-RMWVCVSDPFD-ELRIAKAIIEALEG-------FVPTVG-ELN--- 263 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~~~~i~~~l~~-------~~~~~~-~~~--- 263 (673)
.-++|+|..|+|||+|| ..+.|.. .-+. ++++-+.+..+ +.++.+.+.+.=.. ...+.. ...
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 251 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIA 251 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHH
Confidence 46899999999999995 6888853 3453 57888887654 34555555432110 011111 000
Q ss_pred -HHHHHHHHHh--CCCeEEEEEcCC
Q 005860 264 -SLLESIRASL--VGKKFLLILDDM 285 (673)
Q Consensus 264 -~~~~~l~~~l--~~kr~LlVLDdv 285 (673)
.....+.+++ +++.+||++||+
T Consensus 252 ~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 252 PYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeccH
Confidence 1111233333 589999999998
No 418
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.38 E-value=0.067 Score=51.07 Aligned_cols=24 Identities=17% Similarity=0.319 Sum_probs=21.2
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+|+|.|+.|+||||+|+.+...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999998763
No 419
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.36 E-value=0.094 Score=53.46 Aligned_cols=23 Identities=39% Similarity=0.522 Sum_probs=21.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+++|+|+.|+|||||.+.+..-
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 58999999999999999999884
No 420
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.36 E-value=0.12 Score=53.97 Aligned_cols=86 Identities=14% Similarity=0.202 Sum_probs=51.5
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCC----eEEEEEcCCccc-HHHHHHHHHHH--hhC-----CCCCcCcH---
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFD----KRMWVCVSDPFD-ELRIAKAIIEA--LEG-----FVPTVGEL--- 262 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~vs~~~~-~~~~~~~i~~~--l~~-----~~~~~~~~--- 262 (673)
.-++|.|..|+|||+|+.++.+.... +-+ .++++-+.+..+ +.++..++.+. +.. ...+..-.
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 34789999999999999988886332 223 567777776543 44555555443 110 01111111
Q ss_pred --HHHHHHHHHHh---CCCeEEEEEcCC
Q 005860 263 --NSLLESIRASL---VGKKFLLILDDM 285 (673)
Q Consensus 263 --~~~~~~l~~~l---~~kr~LlVLDdv 285 (673)
......+.+++ +++.+||++||+
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 11222344444 379999999998
No 421
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=92.36 E-value=0.18 Score=53.83 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=35.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccH-HHHHHHH
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDE-LRIAKAI 248 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~~~~~i 248 (673)
..++|.|..|+|||+|++.+.+. .+-+.++++-+.+..+. .++..++
T Consensus 228 qr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 228 GTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp CEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred CeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 46899999999999999998774 23367888988887654 3444443
No 422
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.34 E-value=0.071 Score=52.04 Aligned_cols=110 Identities=16% Similarity=0.184 Sum_probs=56.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCC-cccHHHHHHHHHH--HhhCCCCCcCcHHHHHHHHHHHh
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSD-PFDELRIAKAIIE--ALEGFVPTVGELNSLLESIRASL 273 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~l~~~l 273 (673)
-.+++|+|+.|+|||||++.+... ....+.+.+++.-.. .+-.... ..++. .++. +. ..+...+...+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl---~~---~~l~~~la~aL 95 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE---DT---KSFADALRAAL 95 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT---TB---SCHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeecCCc-ceeeeHHHhCC---CH---HHHHHHHHHHH
Confidence 469999999999999999988873 211223444332100 0000000 00000 0000 11 12345566666
Q ss_pred CCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCChhHHH
Q 005860 274 VGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKETVAR 320 (673)
Q Consensus 274 ~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 320 (673)
...+=+|++|... +......+.... ..|.-|++||.+.++..
T Consensus 96 ~~~p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~~~ 137 (261)
T 2eyu_A 96 REDPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAID 137 (261)
T ss_dssp HHCCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSHHH
T ss_pred hhCCCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchHHH
Confidence 5566788999985 333322222222 24667899998866544
No 423
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.33 E-value=0.062 Score=51.38 Aligned_cols=25 Identities=28% Similarity=0.147 Sum_probs=22.3
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...+|+|.|..|+|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999998873
No 424
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.27 E-value=0.1 Score=53.35 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=21.6
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-.+++|+|+.|+|||||.+.+..-
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcC
Confidence 358999999999999999999874
No 425
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.25 E-value=0.074 Score=52.75 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-.+++|+|..|+|||||.+.+..-
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 358999999999999999999885
No 426
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.24 E-value=0.097 Score=46.84 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.7
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998874
No 427
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.22 E-value=0.071 Score=49.17 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=21.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 567999999999999999988775
No 428
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.20 E-value=0.079 Score=58.68 Aligned_cols=43 Identities=19% Similarity=0.303 Sum_probs=35.9
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+.++|.+..++.+...+..+ ..+.|+|++|+||||||+.+...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g---------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK---------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT---------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC---------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 46899998888877777543 36899999999999999999885
No 429
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.18 E-value=0.27 Score=52.21 Aligned_cols=50 Identities=10% Similarity=0.115 Sum_probs=33.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHH
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAII 249 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (673)
-.++.|.|.+|+||||||..+....... .-..++|++... +...+...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHH
Confidence 3589999999999999998877752211 123577877554 4455555554
No 430
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.15 E-value=0.072 Score=48.73 Aligned_cols=22 Identities=45% Similarity=0.496 Sum_probs=19.8
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998874
No 431
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.12 E-value=0.067 Score=50.84 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.7
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998763
No 432
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.10 E-value=0.091 Score=52.87 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+|.|+|+.|+||||||..+.+.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999885
No 433
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.09 E-value=0.072 Score=53.07 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-.+++|+|+.|+|||||++.+..-
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhh
Confidence 468999999999999999998873
No 434
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.08 E-value=0.068 Score=50.38 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=19.6
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998773
No 435
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.98 E-value=0.088 Score=53.04 Aligned_cols=25 Identities=36% Similarity=0.461 Sum_probs=21.9
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...+|+|+|.+|+||||++..+...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999887764
No 436
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.95 E-value=0.31 Score=51.47 Aligned_cols=84 Identities=19% Similarity=0.136 Sum_probs=49.6
Q ss_pred EEEEEEccCCChHHHHH-HHHhcCccccccCCe-EEEEEcCCccc-HHHHHHHHHHHhhCC-------CCCcCcHH----
Q 005860 198 QIITIVGMGGIGKTTLA-QFAYNDSDVFEYFDK-RMWVCVSDPFD-ELRIAKAIIEALEGF-------VPTVGELN---- 263 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~---- 263 (673)
.-++|+|..|+|||+|| ..+.|.. .-+. ++++-+.+..+ +.++.+.+.+.=... ..+..-..
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a 238 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLA 238 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHH
Confidence 46899999999999995 6888852 3453 57888887654 344555554321110 11111011
Q ss_pred -HHHHHHHHHh--CCCeEEEEEcCC
Q 005860 264 -SLLESIRASL--VGKKFLLILDDM 285 (673)
Q Consensus 264 -~~~~~l~~~l--~~kr~LlVLDdv 285 (673)
.....+.+++ +++.+||++||+
T Consensus 239 ~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 239 PYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecH
Confidence 0111233333 589999999998
No 437
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.94 E-value=0.4 Score=50.76 Aligned_cols=53 Identities=9% Similarity=-0.023 Sum_probs=35.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHh
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEAL 252 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 252 (673)
-.++.|.|.+|+||||||..+..+... .+=..++|++... +...+...++...
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~-~~g~~vl~~slE~--~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAAL-KEGVGVGIYSLEM--PAAQLTLRMMCSE 252 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEECCC--CHHHHHHHHHHHH
Confidence 358999999999999999777764211 1123577877654 4566776666543
No 438
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.93 E-value=0.077 Score=53.19 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+|.|+|+.|+||||||+.+.+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998873
No 439
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.87 E-value=0.089 Score=51.23 Aligned_cols=25 Identities=36% Similarity=0.348 Sum_probs=21.9
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhc
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
....++.+.|.||+||||++..+..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 4578999999999999999988874
No 440
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.84 E-value=0.12 Score=52.67 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=21.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+++|+|+.|+|||||.+.+..-
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999999874
No 441
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.81 E-value=0.086 Score=48.87 Aligned_cols=37 Identities=19% Similarity=0.115 Sum_probs=26.6
Q ss_pred HHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 178 KSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+..+..++..- +.-..+.|+|++|+||||+|..+.+.
T Consensus 45 ~~~l~~~~~~i------Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGT------PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTC------TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC------CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 55555655432 22346899999999999999888774
No 442
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.78 E-value=0.086 Score=52.36 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+|.|+|+.|+||||||..+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 368999999999999999998874
No 443
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=91.78 E-value=0.42 Score=50.36 Aligned_cols=82 Identities=24% Similarity=0.257 Sum_probs=50.3
Q ss_pred EEEEEEccCCChHHHHH-HHHhcCccccccCC-eEEEEEcCCccc-HHHHHHHHHHHhhCC-------CCCcC-cH----
Q 005860 198 QIITIVGMGGIGKTTLA-QFAYNDSDVFEYFD-KRMWVCVSDPFD-ELRIAKAIIEALEGF-------VPTVG-EL---- 262 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~-~~---- 262 (673)
.-++|.|..|+|||+|| ..+.|. .+-+ .++++-+.+..+ +.++...+.+.=... ..+.. -.
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a 238 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLA 238 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHH
Confidence 45899999999999996 677774 2334 467888888654 445555544431111 11111 00
Q ss_pred ----HHHHHHHHHHhCCCeEEEEEcCC
Q 005860 263 ----NSLLESIRASLVGKKFLLILDDM 285 (673)
Q Consensus 263 ----~~~~~~l~~~l~~kr~LlVLDdv 285 (673)
-...+.+++ +++.+||++||+
T Consensus 239 ~~~a~tiAEyfrd--~G~dVLli~Dsl 263 (513)
T 3oaa_A 239 PYAGCAMGEYFRD--RGEDALIIYDDL 263 (513)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEEEETH
T ss_pred HHHHHHHHHHHHh--cCCCEEEEecCh
Confidence 122333443 689999999998
No 444
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.75 E-value=0.23 Score=46.09 Aligned_cols=49 Identities=20% Similarity=0.155 Sum_probs=31.1
Q ss_pred EEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHH
Q 005860 199 IITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAII 249 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (673)
.|+|=|.-|+||||.++.+.+. ....-..+++..-.......+..++++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~--L~~~g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY--LEKRGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCCCcHHHHHHHHh
Confidence 3778899999999999999885 333333445554444333444444444
No 445
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.74 E-value=0.11 Score=53.01 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=21.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+++|+|+.|+|||||.+.+..-
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTS
T ss_pred CEEEEECCCCccHHHHHHHHHcC
Confidence 58999999999999999999984
No 446
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.73 E-value=0.081 Score=55.54 Aligned_cols=52 Identities=21% Similarity=0.218 Sum_probs=35.6
Q ss_pred CcceechhhHHHHHHHhccC-------CcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCE-------SSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~-------~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..++|.++.++.+...+... ..-......+-|.++|++|+||||+|+.+...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 46889888888877666321 00000012355889999999999999999884
No 447
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.70 E-value=0.043 Score=54.56 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=18.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
..+|+|.|..|+||||+|+.+.+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999877
No 448
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.69 E-value=0.083 Score=49.49 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=19.8
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+|.|.|++|+||||.|+.+.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998874
No 449
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.68 E-value=0.13 Score=52.60 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=26.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEE
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWV 233 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 233 (673)
-.+++|+|+.|+|||||.+.+..-. ....+.+++
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~---~p~~G~I~i 62 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY---KPTSGEIYF 62 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS---CCSEEEEEE
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC---CCCccEEEE
Confidence 3589999999999999999999842 233455554
No 450
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.68 E-value=0.084 Score=51.78 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.++|+|..|+|||||.+.++.-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998873
No 451
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.68 E-value=0.084 Score=52.70 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 005860 198 QIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999887
No 452
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.67 E-value=0.09 Score=47.96 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=19.4
Q ss_pred EEEEEccCCChHHHHHHHHhc
Q 005860 199 IITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (673)
+.+|+|..|+|||||+.+++-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999998865
No 453
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.64 E-value=0.13 Score=47.09 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=21.6
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
....|.|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999888775
No 454
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.62 E-value=0.082 Score=50.58 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=21.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...|.|.|+.|+||||+|+.+.+.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999874
No 455
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.61 E-value=0.13 Score=52.59 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=21.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-.+++|+|+.|+|||||.+.+..-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 358999999999999999999884
No 456
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.58 E-value=0.13 Score=52.85 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=21.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+++|+|+.|+|||||.+.+..-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCcHHHHHHHHHHcC
Confidence 58999999999999999999884
No 457
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.57 E-value=0.089 Score=53.06 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=22.7
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+.+++|+|+.|+|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999864
No 458
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.56 E-value=0.13 Score=52.76 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-.+++|+|+.|+|||||.+.+..-
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 358999999999999999999884
No 459
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.56 E-value=0.13 Score=52.78 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=21.4
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+++|+|+.|+|||||.+.+..-
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHcC
Confidence 58999999999999999999984
No 460
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.55 E-value=0.1 Score=46.13 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.-|.|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999888765
No 461
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=91.53 E-value=0.22 Score=53.31 Aligned_cols=46 Identities=17% Similarity=0.118 Sum_probs=33.7
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCccc-HHHHHHH
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFD-ELRIAKA 247 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~ 247 (673)
..++|.|..|+|||+|+..+.+.. +-+.++++-+.+..+ +.++..+
T Consensus 233 qr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 233 GAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHH
T ss_pred CEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHH
Confidence 568999999999999999988742 336788888877643 3344433
No 462
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.52 E-value=0.1 Score=48.28 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=21.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999988875
No 463
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=91.48 E-value=0.31 Score=51.60 Aligned_cols=88 Identities=23% Similarity=0.203 Sum_probs=50.5
Q ss_pred EEEEEEccCCChHHHHH-HHHhcCccc----cccCC-eEEEEEcCCccc-HHHHHHHHHHHhhC-------CCCCcC-cH
Q 005860 198 QIITIVGMGGIGKTTLA-QFAYNDSDV----FEYFD-KRMWVCVSDPFD-ELRIAKAIIEALEG-------FVPTVG-EL 262 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa-~~v~~~~~~----~~~F~-~~~wv~vs~~~~-~~~~~~~i~~~l~~-------~~~~~~-~~ 262 (673)
.-++|+|..|+|||+|| ..+.|.... ..+-+ .++++-+.+..+ +.++.+.+.+.=.. ...+.. ..
T Consensus 163 QR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~ 242 (510)
T 2ck3_A 163 QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPL 242 (510)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHH
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHH
Confidence 46899999999999995 677775321 01244 477888887654 34555555432100 011111 00
Q ss_pred H----HHHHHHHHHh--CCCeEEEEEcCC
Q 005860 263 N----SLLESIRASL--VGKKFLLILDDM 285 (673)
Q Consensus 263 ~----~~~~~l~~~l--~~kr~LlVLDdv 285 (673)
. .....+.+++ +++.+||++||+
T Consensus 243 r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 243 QYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 0 1111233333 589999999998
No 464
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.43 E-value=0.12 Score=47.07 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=21.9
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999998874
No 465
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.42 E-value=0.24 Score=61.24 Aligned_cols=81 Identities=19% Similarity=0.151 Sum_probs=0.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCC-----CcCcHHHHHHHHHHH
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVP-----TVGELNSLLESIRAS 272 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~ 272 (673)
++|-|+|++|+|||+||.++... ....=..++|+++...++... ++.++..-. .....++....++..
T Consensus 1428 ~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~l 1500 (2050)
T 3cmu_A 1428 RIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 1500 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHHH
Q ss_pred h-CCCeEEEEEcCC
Q 005860 273 L-VGKKFLLILDDM 285 (673)
Q Consensus 273 l-~~kr~LlVLDdv 285 (673)
. ..+.-+||+|.+
T Consensus 1501 vr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1501 ARSGAVDVIVVDSV 1514 (2050)
T ss_dssp HHHTCCSEEEESCG
T ss_pred HhcCCCCEEEEcCh
No 466
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.35 E-value=0.089 Score=50.47 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=22.1
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhc
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
....+|+|+|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999999876
No 467
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.29 E-value=0.098 Score=51.61 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=19.9
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 005860 198 QIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
.++.|+|.+|+|||||+..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999987775
No 468
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.24 E-value=0.099 Score=52.06 Aligned_cols=51 Identities=16% Similarity=0.126 Sum_probs=32.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCC-eEEEEEcCCcccHHHHHHHHHHH
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFD-KRMWVCVSDPFDELRIAKAIIEA 251 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~ 251 (673)
-.+++|+|.+|+|||||++.+.... ...-. .++|+.... +..++...+...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~--~~~~G~~v~~~~~e~--~~~~~~~r~~~~ 86 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQW--GTAMGKKVGLAMLEE--SVEETAEDLIGL 86 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHH--HHTSCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH--HHHcCCeEEEEeCcC--CHHHHHHHHHHH
Confidence 3589999999999999998887742 22212 466766443 344444444443
No 469
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.13 E-value=0.1 Score=54.85 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=22.5
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...+|.|+|++|+||||+|+.+...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999999998874
No 470
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.11 E-value=0.11 Score=54.22 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=22.4
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...+++|+|..|+|||||.+.+..-
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 3569999999999999999999883
No 471
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.08 E-value=0.12 Score=51.23 Aligned_cols=24 Identities=29% Similarity=0.191 Sum_probs=21.6
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+|.|+|+.|+||||||..+.+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 578999999999999999998873
No 472
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.08 E-value=0.11 Score=53.09 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=21.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+++|+|+.|+|||||.+.+..-
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999999874
No 473
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.07 E-value=0.2 Score=52.29 Aligned_cols=88 Identities=14% Similarity=0.092 Sum_probs=50.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcCcccc--------ccCC-eEEEEEcCCccc-HHHHHHHHHHH--hhC-----CCCCcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVF--------EYFD-KRMWVCVSDPFD-ELRIAKAIIEA--LEG-----FVPTVG 260 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~vs~~~~-~~~~~~~i~~~--l~~-----~~~~~~ 260 (673)
.-++|.|..|+|||+|+..+.+..... ++=+ .++++-+.+..+ +.++..++.+. +.. ...+..
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 357899999999999999888864331 1112 567777776543 34455544332 100 011111
Q ss_pred cHH-----HHHHHHHHHh---CCCeEEEEEcCC
Q 005860 261 ELN-----SLLESIRASL---VGKKFLLILDDM 285 (673)
Q Consensus 261 ~~~-----~~~~~l~~~l---~~kr~LlVLDdv 285 (673)
-.. .....+.+++ +++.+||++||+
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 111 1222344444 379999999998
No 474
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.05 E-value=0.13 Score=49.43 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=27.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSD 237 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 237 (673)
-.++.|.|.+|+||||||..+... ....=..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 358999999999999998766543 212224677887654
No 475
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.95 E-value=0.16 Score=52.22 Aligned_cols=23 Identities=30% Similarity=0.166 Sum_probs=21.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
..+++|+|+.|+|||||++.+..
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999987
No 476
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.94 E-value=0.1 Score=46.13 Aligned_cols=22 Identities=32% Similarity=0.643 Sum_probs=19.5
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999888764
No 477
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=90.93 E-value=0.21 Score=52.78 Aligned_cols=82 Identities=20% Similarity=0.143 Sum_probs=49.5
Q ss_pred EEEEEEccCCChHHHHH-HHHhcCccccccCC-eEEEEEcCCccc-HHHHHHHHHHHhhC--------C-CCC-cCc---
Q 005860 198 QIITIVGMGGIGKTTLA-QFAYNDSDVFEYFD-KRMWVCVSDPFD-ELRIAKAIIEALEG--------F-VPT-VGE--- 261 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~~~~~i~~~l~~--------~-~~~-~~~--- 261 (673)
.-++|+|..|+|||+|| ..+.|.. .-+ .++++-+.+..+ +.++.+.+.+.=.. . +.+ ...
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 239 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA 239 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHH
Confidence 46899999999999995 6888863 245 457888887654 33444444331000 0 111 110
Q ss_pred ---HHHHHHHHHHHhCCCeEEEEEcCC
Q 005860 262 ---LNSLLESIRASLVGKKFLLILDDM 285 (673)
Q Consensus 262 ---~~~~~~~l~~~l~~kr~LlVLDdv 285 (673)
.-...+.++. +++.+||++||+
T Consensus 240 ~~~a~tiAEyfrd--~G~dVLli~Dsl 264 (507)
T 1fx0_A 240 PYTGAALAEYFMY--RERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEEEECH
T ss_pred HHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 1123344444 589999999998
No 478
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=90.89 E-value=0.17 Score=55.44 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+++.|.|.+|.||||++..+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~ 227 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADL 227 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 47889999999999999888763
No 479
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.82 E-value=0.13 Score=49.08 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=22.3
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...+|.|.|+.|+||||+++.+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999885
No 480
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=90.81 E-value=0.29 Score=56.43 Aligned_cols=21 Identities=24% Similarity=0.135 Sum_probs=19.6
Q ss_pred eEEEEEEccCCChHHHHHHHH
Q 005860 197 IQIITIVGMGGIGKTTLAQFA 217 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v 217 (673)
-.+++|+|+.|.||||+.+.+
T Consensus 662 g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 479999999999999999988
No 481
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.81 E-value=0.12 Score=46.58 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999998875
No 482
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.74 E-value=0.15 Score=45.30 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=20.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.--|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999988764
No 483
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.72 E-value=0.14 Score=47.07 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+.|.|.|+.|+||||||..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999988774
No 484
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.68 E-value=0.13 Score=49.54 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...|.|.|..|+||||+++.+.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999998874
No 485
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=90.66 E-value=0.14 Score=51.36 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=27.5
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCC
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSD 237 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 237 (673)
...++|+|+|-||+||||+|..+... ....=..++-|....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCC
Confidence 35789999999999999999776653 222222455665543
No 486
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=90.64 E-value=0.13 Score=45.77 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.5
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-|.|+|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999988764
No 487
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=90.61 E-value=0.1 Score=57.47 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=20.2
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-|.++|.+|+|||+||+.+.+.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTT
T ss_pred ceEEECCCchHHHHHHHHHHHh
Confidence 4789999999999999999985
No 488
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=90.61 E-value=0.16 Score=45.68 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=21.7
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
....|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999988774
No 489
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=90.51 E-value=0.19 Score=44.99 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456899999999999999988775
No 490
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=90.50 E-value=0.7 Score=43.97 Aligned_cols=89 Identities=18% Similarity=0.196 Sum_probs=45.4
Q ss_pred EEEEEEccCCChHHHHHHHH-hcCccccccC-CeEEEEEcCCcccHHHHHHHHHHHhhCCCC---------------C--
Q 005860 198 QIITIVGMGGIGKTTLAQFA-YNDSDVFEYF-DKRMWVCVSDPFDELRIAKAIIEALEGFVP---------------T-- 258 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v-~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------------~-- 258 (673)
+.+.|+|..|+||||+...+ .+........ ...+.+......-...+...+...++.... .
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 36899999999999876433 3221111112 223333334433344455555544432200 0
Q ss_pred ---cCcHHHHHHHHHHHhCCCeEEEEEcCCCC
Q 005860 259 ---VGELNSLLESIRASLVGKKFLLILDDMWT 287 (673)
Q Consensus 259 ---~~~~~~~~~~l~~~l~~kr~LlVLDdvw~ 287 (673)
....+.+...+...+.+-+ +||+|.+..
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~~~~-~lVlDEah~ 187 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIRGIS-HVIVDEIHE 187 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCTTCC-EEEECCTTS
T ss_pred eEEEECHHHHHHHHHhhhcCCc-EEEEECCcc
Confidence 0133455555555444443 789999943
No 491
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.48 E-value=0.14 Score=52.78 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...++|+|..|+|||||++.+..-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988773
No 492
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.48 E-value=0.22 Score=50.56 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.6
Q ss_pred CeEEEEEEccCCChHHHHHHHHhc
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
...+++|+|.+|+|||||.+.+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999875
No 493
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.47 E-value=0.12 Score=47.26 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=20.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
--|.|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999888764
No 494
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.40 E-value=0.59 Score=49.34 Aligned_cols=51 Identities=16% Similarity=0.091 Sum_probs=33.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHH
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEA 251 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 251 (673)
-.++.|.|.+|+||||+|..+..+.. ..=..++|++.-. +..++...++..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a--~~g~~vl~fSlEm--s~~ql~~R~~~~ 247 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMS--DNDDVVNLHSLEM--GKKENIKRLIVT 247 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHH--HTTCEEEEECSSS--CTTHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHH--HcCCEEEEEECCC--CHHHHHHHHHHH
Confidence 45899999999999999977766422 2223567765543 444555555544
No 495
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.35 E-value=0.18 Score=45.89 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...|.|+|.+|+|||||...+.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 467899999999999999998875
No 496
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=90.33 E-value=0.21 Score=53.28 Aligned_cols=38 Identities=24% Similarity=0.079 Sum_probs=30.6
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcc
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPF 239 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 239 (673)
.-++|.|..|+|||+|+..+.+.. +-+.++++-+.+..
T Consensus 222 qr~~Ifg~~g~GKT~l~~~ia~~~----~~~v~V~~~iGER~ 259 (578)
T 3gqb_A 222 GTAAIPGPFGSGKSVTQQSLAKWS----NADVVVYVGSGERG 259 (578)
T ss_dssp CEEEECCCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECH
T ss_pred CEEeeeCCCCccHHHHHHHHHhcc----CCCEEEEEEecccH
Confidence 468999999999999999988742 33678888887763
No 497
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.32 E-value=0.29 Score=46.26 Aligned_cols=25 Identities=32% Similarity=0.403 Sum_probs=22.5
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
....|.|.|+.|+||||+++.+.+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999885
No 498
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.32 E-value=0.27 Score=55.66 Aligned_cols=97 Identities=16% Similarity=0.255 Sum_probs=56.7
Q ss_pred CcceechhhHHHHHHHhccCCcc-c-----ccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSE-E-----IINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDEL 242 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~-~-----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 242 (673)
.++.|.++.+++|.+.+.-.-.. + +....+-|.++|++|.|||.||+++.+... .. ++.++. .
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~--~~-----f~~v~~----~ 545 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--AN-----FISIKG----P 545 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT--CE-----EEECCH----H
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC--Cc-----eEEecc----c
Confidence 46778888888887766432110 0 112344578999999999999999999622 22 333332 1
Q ss_pred HHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCCeEEEEEcCC
Q 005860 243 RIAKAIIEALEGFVPTVGELNSLLESIRASLVGKKFLLILDDM 285 (673)
Q Consensus 243 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv 285 (673)
+ ++....+ .....+...+...-+..++.|++|++
T Consensus 546 ~----l~s~~vG-----ese~~vr~lF~~Ar~~~P~IifiDEi 579 (806)
T 3cf2_A 546 E----LLTMWFG-----ESEANVREIFDKARQAAPCVLFFDEL 579 (806)
T ss_dssp H----HHTTTCS-----SCHHHHHHHHHHHHTTCSEEEECSCG
T ss_pred h----hhccccc-----hHHHHHHHHHHHHHHcCCceeechhh
Confidence 1 1111111 11223333344444567899999998
No 499
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.30 E-value=0.14 Score=45.63 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999888764
No 500
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=90.24 E-value=0.2 Score=44.60 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=19.5
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 005860 198 QIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
--|.|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999998865
Done!