BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005862
(673 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 97/363 (26%), Positives = 154/363 (42%), Gaps = 59/363 (16%)
Query: 79 MQNSKRDTPLHVAARAGMLQTAKILVD-----------------CAKRSGMTSSSQIDVK 121
+ N K +TPLH+AARAG + AK L+ CA R G T+ VK
Sbjct: 42 VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNM----VK 97
Query: 122 GLME------MKNVRGNTALH--------EALNALLDAKKDKNKQKEERVTLL------- 160
L+E + G+T LH E + ALL+ + + ++ T L
Sbjct: 98 LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYG 157
Query: 161 -VSLARSLVSED--PNASYLKNVDCKSPLYLAVESKNEDILKYILEALPVNDDCATKLEG 217
V +A L+ D PNA+ + +PL++AV N DI+K +L + G
Sbjct: 158 KVRVAELLLERDAHPNAAGKNGL---TPLHVAVHHNNLDIVKLLLPR--GGSPHSPAWNG 212
Query: 218 KSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDS 277
+P+ +A + ++ + + + + + Q TP+H AA H E V L +
Sbjct: 213 YTPLHIAAKQNQVEVARSL-LQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 271
Query: 278 VLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTV 337
L N+ G P HL + G V V + M T + G LHVA+ G V
Sbjct: 272 NLG-NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM---GYTPLHVASHYGNIKLV 327
Query: 338 RRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSI 397
+ +L+ +N G +PLH AA G +L+ +G A+ + ++ G T +I
Sbjct: 328 KFLLQH---QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG-ASPNEVSSDGTTPLAI 383
Query: 398 AKQ 400
AK+
Sbjct: 384 AKR 386
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 131/309 (42%), Gaps = 37/309 (11%)
Query: 86 TPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLMEMKNVRGNTALHEALNALLDA 145
TPLHVA+ G L K L+ +R + S + V+ + M G+T E LL
Sbjct: 16 TPLHVASFMGHLPIVKNLL---QRGASPNVSNVKVETPLHMAARAGHT---EVAKYLLQN 69
Query: 146 KKDKNKQKEERVTLLVSLAR-------SLVSEDPNASYLKNVDCKSPLYLAVESKNEDIL 198
K N + ++ T L AR L+ E+ L +PL++A + + +
Sbjct: 70 KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETV 129
Query: 199 KYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMN------ 252
+LE + C TK +G +P+ VA + K+ + + LLL +D N
Sbjct: 130 LALLEK-EASQACMTK-KGFTPLHVAAKYGKVRVAE--------LLLERDAHPNAAGKNG 179
Query: 253 -TPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMP 311
TP+H A ++L+ V+ L S G+ P H+A+ +V V +
Sbjct: 180 LTPLHVAVHHNNLDIVKLLLP-RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS- 237
Query: 312 PPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHL 371
+ +G LH+AA++G ++ V +L L N+ G TPLHL A G
Sbjct: 238 --ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK---SGLTPLHLVAQEGHVP 292
Query: 372 AAAILVWDG 380
A +L+ G
Sbjct: 293 VADVLIKHG 301
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 7/115 (6%)
Query: 288 PFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNID 347
P H+AS G + ++ ++ P + N K + LH+AA+ G ++ + +L+
Sbjct: 17 PLHVASFMGHLPIVKNLLQRGASP---NVSNVKVETPLHMAARAGHTEVAKYLLQNK--- 70
Query: 348 TLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIAKQKS 402
+N D TPLH AA G H L+ + AN ++ G T IA ++
Sbjct: 71 AKVNAKAKDDQTPLHCAARIG-HTNMVKLLLENNANPNLATTAGHTPLHIAAREG 124
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 8/130 (6%)
Query: 253 TPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPP 312
TP+H AA HLE V+ L E D V +++ G P HLA+ NG + V+ E
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG---A 59
Query: 313 PTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLA 372
+ G+ LH+AA+ G + V+ +L+A +N D +G TPLHLAA G HL
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG---ADVNAKDKNGRTPLHLAARNG-HLE 115
Query: 373 AAILVWDGRA 382
L+ + A
Sbjct: 116 VVKLLLEAGA 125
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 68/124 (54%), Gaps = 4/124 (3%)
Query: 183 KSPLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPA 242
++PL+LA + + +++K +LEA D A G++P+ +A L ++K++ + A
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGA--DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-A 59
Query: 243 LLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMG 302
+ +D+ TP+H AA HLE V+ L E D V +++ G P HLA+ NG + V+
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVK 118
Query: 303 EFFE 306
E
Sbjct: 119 LLLE 122
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 5/127 (3%)
Query: 217 GKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPD 276
G++P+ +A L ++K++ + A + +D+ TP+H AA HLE V+ L E D
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 277 SVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDT 336
V +++ G P HLA+ NG + V+ E + G+ LH+AA+ G +
Sbjct: 61 -VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG---ADVNAKDKNGRTPLHLAARNGHLEV 116
Query: 337 VRRILKA 343
V+ +L+A
Sbjct: 117 VKLLLEA 123
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 7/116 (6%)
Query: 285 GFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKAS 344
G P HLA+ NG + V+ E + G+ LH+AA+ G + V+ +L+A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAG---ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 345 NIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIAKQ 400
+N D +G TPLHLAA G HL L+ + A+ + + +G+T +A +
Sbjct: 59 ---ADVNAKDKNGRTPLHLAARNG-HLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 110
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 29/134 (21%)
Query: 86 TPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLMEMKNVRGNTALH--------E 137
TPLH+AAR G L+ K+L++ DV K+ G T LH E
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGA----------DVNA----KDKNGRTPLHLAARNGHLE 49
Query: 138 ALNALLDAKKDKNKQKEERVTLLVSLARS-------LVSEDPNASYLKNVDCKSPLYLAV 190
+ LL+A D N + + T L AR+ L+ E K+ + ++PL+LA
Sbjct: 50 VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 109
Query: 191 ESKNEDILKYILEA 204
+ + +++K +LEA
Sbjct: 110 RNGHLEVVKLLLEA 123
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 49/163 (30%), Positives = 78/163 (47%), Gaps = 17/163 (10%)
Query: 258 AASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELL 317
AA + VR L N V + +G+ P HLA++NG + ++ + ++L
Sbjct: 21 AARAGQDDEVRILMA-NGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDL- 78
Query: 318 NTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILV 377
G LH+AA G + V +LK +N D+DG+TPLHLAA YG HL ++
Sbjct: 79 --TGITPLHLAAATGHLEIVEVLLKHG---ADVNAYDNDGHTPLHLAAKYG-HLEIVEVL 132
Query: 378 WDGRANQDIINFHGQTAYSIAKQKSAEINPEFFGNDDDADQLR 420
A+ + + G+TA+ I+ GN+D A+ L+
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDN---------GNEDLAEILQ 166
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/129 (31%), Positives = 55/129 (42%), Gaps = 7/129 (5%)
Query: 248 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEK 307
D TP+H AAS HLE V L + N V + G P HLA+A G + ++ E K
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLLK-NGADVNASDLTGITPLHLAAATGHLEIV-EVLLK 101
Query: 308 ENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALY 367
+ G LH+AAK G + V +LK +N D G T ++
Sbjct: 102 HG--ADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHG---ADVNAQDKFGKTAFDISIDN 156
Query: 368 GRHLAAAIL 376
G A IL
Sbjct: 157 GNEDLAEIL 165
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 181 DCKSPLYLAVESKNEDILKYILE-ALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDK 239
D +PL+LA + + +I++ +L+ VN A+ L G +P+ +A L +++++ K
Sbjct: 46 DGYTPLHLAASNGHLEIVEVLLKNGADVN---ASDLTGITPLHLAAATGHLEIVEVLL-K 101
Query: 240 QPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANG 296
A + D +TP+H AA HLE V L + D V +++ G F ++ NG
Sbjct: 102 HGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNG 157
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 39/200 (19%)
Query: 234 KMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYE----INPDSVLQRNEEGFYPF 289
+++H K P+LLL +D+ P+HW+ S E FL +N D ++ G+ PF
Sbjct: 20 ELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDY--PDDSGWTPF 76
Query: 290 HLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKK------------GKSDTV 337
H+A + G + V+ +++ P ++ N +G LH+A K G S +
Sbjct: 77 HIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFEVSQFLIENGASVRI 135
Query: 338 RR------ILKASNIDTL-------------INEMDDDGNTPLHLAALYGRHLAAAILVW 378
+ + +A+++ +L +N D G TPL A G AA +LV
Sbjct: 136 KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE 195
Query: 379 DGRANQDIINFHGQTAYSIA 398
A D+++ G A +A
Sbjct: 196 KYGAEYDLVDNKGAKAEDVA 215
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Query: 252 NTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMP 311
N P+H A + V+ L P +LQ++++G P H + + + K
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 312 PPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLA 364
+ + G H+A G + V+ + + +N++ + G T LHLA
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP-LKPDLNKITNQGVTCLHLA 114
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 39/200 (19%)
Query: 234 KMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYE----INPDSVLQRNEEGFYPF 289
+++H K P+LLL +D+ P+HW+ S E FL +N D ++ G+ PF
Sbjct: 20 ELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDY--PDDSGWTPF 76
Query: 290 HLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKK------------GKSDTV 337
H+A + G + V+ +++ P ++ N +G LH+A K G S +
Sbjct: 77 HIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFEVSQFLIENGASVRI 135
Query: 338 RR------ILKASNIDTL-------------INEMDDDGNTPLHLAALYGRHLAAAILVW 378
+ + +A+++ +L +N D G TPL A G AA +LV
Sbjct: 136 KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE 195
Query: 379 DGRANQDIINFHGQTAYSIA 398
A D+++ G A +A
Sbjct: 196 KYGAEYDLVDNKGAKAEDVA 215
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Query: 252 NTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMP 311
N P+H A + V+ L P +LQ++++G P H + + + K
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 312 PPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLA 364
+ + G H+A G + V+ + + +N++ + G T LHLA
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP-LKPDLNKITNQGVTCLHLA 114
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 39/200 (19%)
Query: 234 KMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYE----INPDSVLQRNEEGFYPF 289
+++H K P+LLL +D+ P+HW+ S E FL +N D ++ G+ PF
Sbjct: 20 ELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDY--PDDSGWTPF 76
Query: 290 HLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKK------------GKSDTV 337
H+A + G + V+ +++ P ++ N +G LH+A K G S +
Sbjct: 77 HIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFEVSQFLIENGASVRI 135
Query: 338 RR------ILKASNIDTL-------------INEMDDDGNTPLHLAALYGRHLAAAILVW 378
+ + +A+++ +L +N D G TPL A G AA +LV
Sbjct: 136 KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE 195
Query: 379 DGRANQDIINFHGQTAYSIA 398
A D+++ G A +A
Sbjct: 196 KYGAEYDLVDNKGAKAEDVA 215
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Query: 252 NTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMP 311
N P+H A + V+ L P +LQ++++G P H + + + K
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 312 PPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLA 364
+ + G H+A G + V+ + + +N++ + G T LHLA
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP-LKPDLNKITNQGVTCLHLA 114
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 7/130 (5%)
Query: 247 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFE 306
+D+ TP+H AA HLE V L + D V ++++G+ P HLA+ G + ++ E
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIV-EVLL 88
Query: 307 KENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAAL 366
K + + G LH+AA++G + V +LKA +N D G TP LA
Sbjct: 89 KAGADVNAK--DKDGYTPLHLAAREGHLEIVEVLLKAG---ADVNAQDKFGKTPFDLAIR 143
Query: 367 YGRHLAAAIL 376
G A +L
Sbjct: 144 EGHEDIAEVL 153
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 8/147 (5%)
Query: 258 AASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELL 317
AA + VR L N V ++++G+ P HLA+ G + ++ E K +
Sbjct: 9 AARAGQDDEVRILMA-NGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAK-- 64
Query: 318 NTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILV 377
+ G LH+AA++G + V +LKA +N D DG TPLHLAA G HL ++
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLLKAG---ADVNAKDKDGYTPLHLAAREG-HLEIVEVL 120
Query: 378 WDGRANQDIINFHGQTAYSIAKQKSAE 404
A+ + + G+T + +A ++ E
Sbjct: 121 LKAGADVNAQDKFGKTPFDLAIREGHE 147
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
G+ +L AA+ G+ D VR IL A+ D +N D DG TPLHLAA G HL ++
Sbjct: 3 GKKLLE-AARAGQDDEVR-ILMANGAD--VNAKDKDGYTPLHLAAREG-HLEIVEVLLKA 57
Query: 381 RANQDIINFHGQTAYSIAKQK 401
A+ + + G T +A ++
Sbjct: 58 GADVNAKDKDGYTPLHLAARE 78
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 56/137 (40%), Gaps = 35/137 (25%)
Query: 86 TPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLMEMKNVRGNTALH--------E 137
TPLH+AAR G L+ ++L+ DV K+ G T LH E
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGA----------DVNA----KDKDGYTPLHLAAREGHLE 82
Query: 138 ALNALLDAKKDKNKQKEERVTLLVSLARS----------LVSEDPNASYLKNVDCKSPLY 187
+ LL A D N + ++ T L AR D NA ++ K+P
Sbjct: 83 IVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA---QDKFGKTPFD 139
Query: 188 LAVESKNEDILKYILEA 204
LA+ +EDI + + +A
Sbjct: 140 LAIREGHEDIAEVLQKA 156
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 87/186 (46%), Gaps = 9/186 (4%)
Query: 181 DCKSPLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQ 240
D ++PL A E+ + + +KY+++A + D EG + + +A + +++ +
Sbjct: 43 DQRTPLMEAAENNHLEAVKYLIKAGALVD--PKDAEGSTCLHLAAKKGHYEVVQYLLSNG 100
Query: 241 PALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRV 300
+ QD+ TPM WA H++ V+ L D ++ NEE H A+ +G V +
Sbjct: 101 QMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENIC-LHWAAFSGCVDI 159
Query: 301 MGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTP 360
+ +N G + LH+AA++ + D V L + TL N+ +G TP
Sbjct: 160 AEILLAAK---CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNK---EGETP 213
Query: 361 LHLAAL 366
L A+L
Sbjct: 214 LQCASL 219
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 91/188 (48%), Gaps = 9/188 (4%)
Query: 183 KSPLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPA 242
+SPL+ A E+ + DI +++A D C+ + ++P+ A E L +K + K A
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSE--DQRTPLMEAAENNHLEAVKYL-IKAGA 68
Query: 243 LLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMG 302
L+ +D + +T +H AA H E V++L V +++ G+ P A+ V ++
Sbjct: 69 LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 128
Query: 303 EFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLH 362
K + + + LH AA G D + IL A+ D ++ ++ G++PLH
Sbjct: 129 LLLSK---GSDINIRDNEENICLHWAAFSGCVD-IAEILLAAKCD--LHAVNIHGDSPLH 182
Query: 363 LAALYGRH 370
+AA R+
Sbjct: 183 IAARENRY 190
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 112/251 (44%), Gaps = 38/251 (15%)
Query: 79 MQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLMEMKNVRGNTALHEA 138
M++ + +PLH AA AG + +LV + + ID T +
Sbjct: 6 MEHQNKRSPLHAAAEAGHVDICHMLV--------QAGANID-------------TCSEDQ 44
Query: 139 LNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDIL 198
L++A ++ + E V L+ A +LV DP K+ + + L+LA + + +++
Sbjct: 45 RTPLMEAAENNHL---EAVKYLIK-AGALV--DP-----KDAEGSTCLHLAAKKGHYEVV 93
Query: 199 KYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWA 258
+Y+L ++ +C G +P+ A E + + L+K++ K + + I+D + N +HWA
Sbjct: 94 QYLLSNGQMDVNCQDD-GGWTPMIWATEYKHVDLVKLLLSK-GSDINIRDNEENICLHWA 151
Query: 259 ASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLN 318
A ++ L D + N G P H+A+ R + F +++ L N
Sbjct: 152 AFSGCVDIAEILLAAKCD-LHAVNIHGDSPLHIAARENRYDCVVLFLSRDS---DVTLKN 207
Query: 319 TKGQNILHVAA 329
+G+ L A+
Sbjct: 208 KEGETPLQCAS 218
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 10/186 (5%)
Query: 218 KSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDS 277
+SP+ A E + + M+ + ++Q TP+ AA +HLE V++L +
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ-RTPLMEAAENNHLEAVKYLIKAGA-L 69
Query: 278 VLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTV 337
V ++ EG HLA+ G V+ M + + G + A + D V
Sbjct: 70 VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ--DDGGWTPMIWATEYKHVDLV 127
Query: 338 RRIL-KASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYS 396
+ +L K S+ IN D++ N LH AA G A IL+ + + +N HG +
Sbjct: 128 KLLLSKGSD----INIRDNEENICLHWAAFSGCVDIAEILL-AAKCDLHAVNIHGDSPLH 182
Query: 397 IAKQKS 402
IA +++
Sbjct: 183 IAAREN 188
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 49/163 (30%), Positives = 78/163 (47%), Gaps = 17/163 (10%)
Query: 258 AASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELL 317
AA + VR L N V ++++G+ P HLA+ G + ++ E K +
Sbjct: 21 AARAGQDDEVRILMA-NGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAK-- 76
Query: 318 NTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILV 377
+ G LH+AA++G + V +LKA +N D DG TPLHLAA G HL ++
Sbjct: 77 DKDGYTPLHLAAREGHLEIVEVLLKAG---ADVNAKDKDGYTPLHLAAREG-HLEIVEVL 132
Query: 378 WDGRANQDIINFHGQTAYSIAKQKSAEINPEFFGNDDDADQLR 420
A+ + + G+TA+ I+ GN+D A+ L+
Sbjct: 133 LKAGADVNAQDKFGKTAFDISIDN---------GNEDLAEILQ 166
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 7/130 (5%)
Query: 247 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFE 306
+D+ TP+H AA HLE V L + D V ++++G+ P HLA+ G + ++ E
Sbjct: 43 KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIV-EVLL 100
Query: 307 KENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAAL 366
K + + G LH+AA++G + V +LKA +N D G T ++
Sbjct: 101 KAGADVNAK--DKDGYTPLHLAAREGHLEIVEVLLKAG---ADVNAQDKFGKTAFDISID 155
Query: 367 YGRHLAAAIL 376
G A IL
Sbjct: 156 NGNEDLAEIL 165
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
G+ +L AA+ G+ D VR IL A+ D +N D DG TPLHLAA G HL ++
Sbjct: 15 GKKLLE-AARAGQDDEVR-ILMANGAD--VNAKDKDGYTPLHLAAREG-HLEIVEVLLKA 69
Query: 381 RANQDIINFHGQTAYSIAKQK 401
A+ + + G T +A ++
Sbjct: 70 GADVNAKDKDGYTPLHLAARE 90
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 40/129 (31%), Positives = 59/129 (45%), Gaps = 7/129 (5%)
Query: 248 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEK 307
D TP+H AA H E V+ L D ++ +G P HLA+ NG V+ +
Sbjct: 34 DSDGKTPLHLAAENGHKEVVKLLLSQGADPN-AKDSDGKTPLHLAAENGHKEVVKLLLSQ 92
Query: 308 ENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALY 367
P + + G+ LH+AA+ G + V+ +L + D N D DG TPL LA +
Sbjct: 93 GADPNAKD---SDGKTPLHLAAENGHKEVVKLLL-SQGADP--NTSDSDGRTPLDLAREH 146
Query: 368 GRHLAAAIL 376
G +L
Sbjct: 147 GNEEVVKLL 155
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 7/131 (5%)
Query: 274 NPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGK 333
N V + +G P HLA+ NG V+ + P + + G+ LH+AA+ G
Sbjct: 26 NGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD---SDGKTPLHLAAENGH 82
Query: 334 SDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQT 393
+ V+ +L + D N D DG TPLHLAA G +L+ G A+ + + G+T
Sbjct: 83 KEVVKLLL-SQGADP--NAKDSDGKTPLHLAAENGHKEVVKLLLSQG-ADPNTSDSDGRT 138
Query: 394 AYSIAKQKSAE 404
+A++ E
Sbjct: 139 PLDLAREHGNE 149
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 9/155 (5%)
Query: 189 AVESKNEDILKYILE-ALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQ 247
A E+ N+D +K +LE VN A+ +GK+P+ +A E ++K++ Q A +
Sbjct: 11 AAENGNKDRVKDLLENGADVN---ASDSDGKTPLHLAAENGHKEVVKLLL-SQGADPNAK 66
Query: 248 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEK 307
D TP+H AA H E V+ L D ++ +G P HLA+ NG V+ +
Sbjct: 67 DSDGKTPLHLAAENGHKEVVKLLLSQGADPN-AKDSDGKTPLHLAAENGHKEVV-KLLLS 124
Query: 308 ENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILK 342
+ P T ++ G+ L +A + G + V+ + K
Sbjct: 125 QGADPNTS--DSDGRTPLDLAREHGNEEVVKLLEK 157
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 38/165 (23%)
Query: 77 ITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLMEMKNVRGNTALH 136
+ +S TPLH+AA G + K+L+ G ++ K+ G T LH
Sbjct: 30 VNASDSDGKTPLHLAAENGHKEVVKLLLS----QGADPNA----------KDSDGKTPLH 75
Query: 137 EALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNED 196
A +N KE V LL+S DPNA K+ D K+PL+LA E+ +++
Sbjct: 76 LAA---------ENGHKEV-VKLLLSQG-----ADPNA---KDSDGKTPLHLAAENGHKE 117
Query: 197 ILKYILE--ALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDK 239
++K +L A P D +G++P+ +A E ++K++ +
Sbjct: 118 VVKLLLSQGADPNTSDS----DGRTPLDLAREHGNEEVVKLLEKQ 158
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 328 AAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDII 387
AA+ G D V+ +L+ +N D DG TPLHLAA G +L+ G A+ +
Sbjct: 11 AAENGNKDRVKDLLENG---ADVNASDSDGKTPLHLAAENGHKEVVKLLLSQG-ADPNAK 66
Query: 388 NFHGQTAYSIAKQ 400
+ G+T +A +
Sbjct: 67 DSDGKTPLHLAAE 79
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 7/130 (5%)
Query: 247 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFE 306
+D+ TP+H AA HLE V L + D V ++++G+ P HLA+ G + ++ E
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIV-EVLL 88
Query: 307 KENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAAL 366
K + + G LH+AA++G + V +LKA +N D G TP LA
Sbjct: 89 KAGADVNAK--DKDGYTPLHLAAREGHLEIVEVLLKAG---ADVNAQDKFGKTPFDLAID 143
Query: 367 YGRHLAAAIL 376
G A +L
Sbjct: 144 NGNEDIAEVL 153
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 258 AASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELL 317
AA + VR L N V ++++G+ P HLA+ G + ++ E K +
Sbjct: 9 AARAGQDDEVRILMA-NGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAK-- 64
Query: 318 NTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILV 377
+ G LH+AA++G + V +LKA +N D DG TPLHLAA G HL ++
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLLKAG---ADVNAKDKDGYTPLHLAAREG-HLEIVEVL 120
Query: 378 WDGRANQDIINFHGQTAYSIAKQKSAEINPEFFGNDDDADQLR 420
A+ + + G+T + +A GN+D A+ L+
Sbjct: 121 LKAGADVNAQDKFGKTPFDLAIDN---------GNEDIAEVLQ 154
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
G+ +L AA+ G+ D VR IL A+ D +N D DG TPLHLAA G HL ++
Sbjct: 3 GKKLLE-AARAGQDDEVR-ILMANGAD--VNAKDKDGYTPLHLAAREG-HLEIVEVLLKA 57
Query: 381 RANQDIINFHGQTAYSIAKQK 401
A+ + + G T +A ++
Sbjct: 58 GADVNAKDKDGYTPLHLAARE 78
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 35/137 (25%)
Query: 86 TPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLMEMKNVRGNTALH--------E 137
TPLH+AAR G L+ ++L+ DV K+ G T LH E
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGA----------DVNA----KDKDGYTPLHLAAREGHLE 82
Query: 138 ALNALLDAKKDKNKQKEERVTLLVSLARS----------LVSEDPNASYLKNVDCKSPLY 187
+ LL A D N + ++ T L AR D NA ++ K+P
Sbjct: 83 IVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA---QDKFGKTPFD 139
Query: 188 LAVESKNEDILKYILEA 204
LA+++ NEDI + + +A
Sbjct: 140 LAIDNGNEDIAEVLQKA 156
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 74/182 (40%), Gaps = 35/182 (19%)
Query: 248 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEK 307
D+ T +HWA S H E V FL ++ V +++ G+ P H+A++ GR ++ K
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGV-PVNDKDDAGWSPLHIAASAGRDEIVKALLGK 95
Query: 308 ENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASN---------------------- 345
+N G LH AA K + + +L+
Sbjct: 96 ---GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNL 152
Query: 346 --IDTLI------NEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSI 397
I L+ N D +GNTPLHLA R A +LV G A+ I N +T +
Sbjct: 153 KMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG-ASIYIENKEEKTPLQV 211
Query: 398 AK 399
AK
Sbjct: 212 AK 213
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 19/140 (13%)
Query: 163 LARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVK 222
+ ++L+ + + + C +PL+ A +I +LE N D E + +
Sbjct: 88 IVKALLGKGAQVNAVNQNGC-TPLHYAASKNRHEIAVMLLEG-GANPDAKDHYEATAMHR 145
Query: 223 VAIELQKLGLLKMMHDKQPALLL-------IQDEQMNTPMHWAASVDHLEGVRFLYEINP 275
A + G LKM+H +LL IQD + NTP+H A + +E + L
Sbjct: 146 AAAK----GNLKMIH-----ILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA 196
Query: 276 DSVLQRNEEGFYPFHLASAN 295
S+ N+E P +A
Sbjct: 197 -SIYIENKEEKTPLQVAKGG 215
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 74/182 (40%), Gaps = 35/182 (19%)
Query: 248 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEK 307
D+ T +HWA S H E V FL ++ V +++ G+ P H+A++ GR ++ K
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGV-PVNDKDDAGWSPLHIAASAGRDEIVKALLGK 96
Query: 308 ENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASN---------------------- 345
+N G LH AA K + + +L+
Sbjct: 97 ---GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNL 153
Query: 346 --IDTLI------NEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSI 397
I L+ N D +GNTPLHLA R A +LV G A+ I N +T +
Sbjct: 154 KMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG-ASIYIENKEEKTPLQV 212
Query: 398 AK 399
AK
Sbjct: 213 AK 214
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 19/140 (13%)
Query: 163 LARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVK 222
+ ++L+ + + + C +PL+ A +I +LE N D E + +
Sbjct: 89 IVKALLGKGAQVNAVNQNGC-TPLHYAASKNRHEIAVMLLEG-GANPDAKDHYEATAMHR 146
Query: 223 VAIELQKLGLLKMMHDKQPALLL-------IQDEQMNTPMHWAASVDHLEGVRFLYEINP 275
A + G LKM+H +LL IQD + NTP+H A + +E + L
Sbjct: 147 AAAK----GNLKMIH-----ILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA 197
Query: 276 DSVLQRNEEGFYPFHLASAN 295
S+ N+E P +A
Sbjct: 198 -SIYIENKEEKTPLQVAKGG 216
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 248 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEK 307
D TP+H+AA H E V+ L D V ++ +G P H A+ G ++ K
Sbjct: 34 DSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNAKDSDGRTPLHYAAKEGHKEIVKLLISK 92
Query: 308 ENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALY 367
++ G+ LH AAK+G + V+ +L + D +N D DG TPL LA +
Sbjct: 93 G---ADVNAKDSDGRTPLHYAAKEGHKEIVK-LLISKGAD--VNTSDSDGRTPLDLAREH 146
Query: 368 G 368
G
Sbjct: 147 G 147
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 7/131 (5%)
Query: 274 NPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGK 333
N V + +G P H A+ G ++ K ++ G+ LH AAK+G
Sbjct: 26 NGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKG---ADVNAKDSDGRTPLHYAAKEGH 82
Query: 334 SDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQT 393
+ V+ +L + D +N D DG TPLH AA G +L+ G A+ + + G+T
Sbjct: 83 KEIVK-LLISKGAD--VNAKDSDGRTPLHYAAKEGHKEIVKLLISKG-ADVNTSDSDGRT 138
Query: 394 AYSIAKQKSAE 404
+A++ E
Sbjct: 139 PLDLAREHGNE 149
Score = 35.8 bits (81), Expect = 0.074, Method: Composition-based stats.
Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 36/164 (21%)
Query: 77 ITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLMEMKNVRGNTALH 136
+ +S TPLH AA+ G + K+L+ S DV K+ G T LH
Sbjct: 30 VNASDSDGRTPLHYAAKEGHKEIVKLLI----------SKGADVNA----KDSDGRTPLH 75
Query: 137 EALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNED 196
A K+ +K E V LL+S D NA K+ D ++PL+ A + +++
Sbjct: 76 Y-------AAKEGHK---EIVKLLISKG-----ADVNA---KDSDGRTPLHYAAKEGHKE 117
Query: 197 ILKYIL-EALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDK 239
I+K ++ + VN + +G++P+ +A E ++K++ +
Sbjct: 118 IVKLLISKGADVN---TSDSDGRTPLDLAREHGNEEIVKLLEKQ 158
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 328 AAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDII 387
AA+ G D V+ +++ +N D DG TPLH AA G +L+ G A+ +
Sbjct: 11 AAENGNKDRVKDLIENG---ADVNASDSDGRTPLHYAAKEGHKEIVKLLISKG-ADVNAK 66
Query: 388 NFHGQTA-YSIAKQKSAEI 405
+ G+T + AK+ EI
Sbjct: 67 DSDGRTPLHYAAKEGHKEI 85
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 7/139 (5%)
Query: 267 VRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILH 326
VR + + + Q ++ GF P H A GR V+ + ++N LH
Sbjct: 16 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR---GARINVMNRGDDTPLH 72
Query: 327 VAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDI 386
+AA G D V+++L+ IN +++ GN PLH A +G+ A LV +G A I
Sbjct: 73 LAASHGHRDIVQKLLQYK---ADINAVNEHGNVPLHYACFWGQDQVAEDLVANG-ALVSI 128
Query: 387 INFHGQTAYSIAKQKSAEI 405
N +G+ AK E+
Sbjct: 129 CNKYGEMPVDKAKAPLREL 147
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 217 GKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPD 276
G SP+ A + +++M+ + A + + + +TP+H AAS H + V+ L + D
Sbjct: 34 GFSPLHWACREGRSAVVEML-IMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD 92
Query: 277 SVLQRNEEGFYPFHLASANGRVRV 300
+ NE G P H A G+ +V
Sbjct: 93 -INAVNEHGNVPLHYACFWGQDQV 115
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 282 NEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRIL 341
+EEGF P A+A+G++ V+ EF + P +LL ++ L +A KG +D V+ +L
Sbjct: 31 DEEGFTPLMWAAAHGQIAVV-EFLLQNGADP--QLLGKGRESALSLACSKGYTDIVKMLL 87
Query: 342 KASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIA 398
+D +NE D +G TPL L A++G H+ ++ + A+ I G + +A
Sbjct: 88 DCG-VD--VNEYDWNGGTPL-LYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 140
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 282 NEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRIL 341
+EEGF P A+A+G++ V+ EF + P +LL ++ L +A KG +D V+ +L
Sbjct: 33 DEEGFTPLMWAAAHGQIAVV-EFLLQNGADP--QLLGKGRESALSLACSKGYTDIVKMLL 89
Query: 342 KASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIA 398
+D +NE D +G TPL L A++G H+ ++ + A+ I G + +A
Sbjct: 90 DCG-VD--VNEYDWNGGTPL-LYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 142
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 7/139 (5%)
Query: 267 VRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILH 326
VR + + + Q ++ GF P H A GR V+ + ++N LH
Sbjct: 21 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR---GARINVMNRGDDTPLH 77
Query: 327 VAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDI 386
+AA G D V+++L+ IN +++ GN PLH A +G+ A LV +G A I
Sbjct: 78 LAASHGHRDIVQKLLQYK---ADINAVNEHGNVPLHYACFWGQDQVAEDLVANG-ALVSI 133
Query: 387 INFHGQTAYSIAKQKSAEI 405
N +G+ AK E+
Sbjct: 134 CNKYGEMPVDKAKAPLREL 152
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 217 GKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPD 276
G SP+ A + +++M+ + A + + + +TP+H AAS H + V+ L + D
Sbjct: 39 GFSPLHWACREGRSAVVEML-IMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD 97
Query: 277 SVLQRNEEGFYPFHLASANGRVRV 300
+ NE G P H A G+ +V
Sbjct: 98 -INAVNEHGNVPLHYACFWGQDQV 120
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 282 NEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRIL 341
+EEGF P A+A+G++ V+ EF + P +LL ++ L +A KG +D V+ +L
Sbjct: 49 DEEGFTPLMWAAAHGQIAVV-EFLLQNGADP--QLLGKGRESALSLACSKGYTDIVKMLL 105
Query: 342 KASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIA 398
+D +NE D +G TPL L A++G H+ ++ + A+ I G + +A
Sbjct: 106 DCG-VD--VNEYDWNGGTPL-LYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 158
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
Query: 248 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEK 307
D TP+H+AA H E V+ L D ++ +G P H A+ NG ++ K
Sbjct: 34 DSDGRTPLHYAAENGHKEIVKLLLSKGADPN-AKDSDGRTPLHYAAENGHKEIVKLLLSK 92
Query: 308 ENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALY 367
P + + G+ LH AA+ G + V+ +L + D N D DG TPL LA +
Sbjct: 93 GADPNAKD---SDGRTPLHYAAENGHKEIVKLLL-SKGADP--NTSDSDGRTPLDLAREH 146
Query: 368 G 368
G
Sbjct: 147 G 147
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 7/154 (4%)
Query: 189 AVESKNEDILKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQD 248
A E+ N+D +K +LE D A+ +G++P+ A E ++K++ K A +D
Sbjct: 11 AAENGNKDRVKDLLENGA--DPNASDSDGRTPLHYAAENGHKEIVKLLLSKG-ADPNAKD 67
Query: 249 EQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKE 308
TP+H+AA H E V+ L D ++ +G P H A+ NG ++ K
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLLSKGADPN-AKDSDGRTPLHYAAENGHKEIVKLLLSKG 126
Query: 309 NMPPPTELLNTKGQNILHVAAKKGKSDTVRRILK 342
P ++ + G+ L +A + G + V+ + K
Sbjct: 127 ADPNTSD---SDGRTPLDLAREHGNEEIVKLLEK 157
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 282 NEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRIL 341
+ +G P H A+ NG ++ K P + + G+ LH AA+ G + V+ +L
Sbjct: 34 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD---SDGRTPLHYAAENGHKEIVKLLL 90
Query: 342 KASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIAKQK 401
+ D N D DG TPLH AA G +L+ G A+ + + G+T +A++
Sbjct: 91 -SKGADP--NAKDSDGRTPLHYAAENGHKEIVKLLLSKG-ADPNTSDSDGRTPLDLAREH 146
Query: 402 SAE 404
E
Sbjct: 147 GNE 149
Score = 36.6 bits (83), Expect = 0.041, Method: Composition-based stats.
Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 38/161 (23%)
Query: 81 NSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLMEMKNVRGNTALHEALN 140
+S TPLH AA G + K+L+ G ++ K+ G T LH A
Sbjct: 34 DSDGRTPLHYAAENGHKEIVKLLLS----KGADPNA----------KDSDGRTPLHYAA- 78
Query: 141 ALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKY 200
+N K E V LL+S DPNA K+ D ++PL+ A E+ +++I+K
Sbjct: 79 --------ENGHK-EIVKLLLSKG-----ADPNA---KDSDGRTPLHYAAENGHKEIVKL 121
Query: 201 ILE--ALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDK 239
+L A P D +G++P+ +A E ++K++ +
Sbjct: 122 LLSKGADPNTSDS----DGRTPLDLAREHGNEEIVKLLEKQ 158
Score = 32.3 bits (72), Expect = 0.81, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 32/122 (26%)
Query: 80 QNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLMEMKNVRGNTALHEAL 139
++S TPLH AA G + K+L+ G ++ K+ G T LH A
Sbjct: 66 KDSDGRTPLHYAAENGHKEIVKLLLS----KGADPNA----------KDSDGRTPLHYAA 111
Query: 140 NALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILK 199
+N K E V LL+S DPN S + D ++PL LA E NE+I+K
Sbjct: 112 ---------ENGHK-EIVKLLLSKG-----ADPNTS---DSDGRTPLDLAREHGNEEIVK 153
Query: 200 YI 201
+
Sbjct: 154 LL 155
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 328 AAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
AA+ G D V+ +L+ + D N D DG TPLH AA G +L+ G
Sbjct: 11 AAENGNKDRVKDLLE-NGADP--NASDSDGRTPLHYAAENGHKEIVKLLLSKG 60
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 83/198 (41%), Gaps = 41/198 (20%)
Query: 234 KMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLAS 293
+++ DK A QD + T +HWA S H E V FL ++ V +++ G+ P H+A+
Sbjct: 25 RILADKSLATRTDQDSR--TALHWACSAGHTEIVEFLLQLGV-PVNDKDDAGWSPLHIAA 81
Query: 294 ANGRVRVMGEFFEK--------ENMPPPTELLNTKGQN---------------------- 323
+ GR ++ K +N P +K ++
Sbjct: 82 SAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDAT 141
Query: 324 ILHVAAKKGKSDTVRRIL--KASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGR 381
+H AA KG V +L KAS N D +GNTPLHLA R A LV G
Sbjct: 142 AMHRAAAKGNLKMVHILLFYKAST-----NIQDTEGNTPLHLACDEERVEEAKFLVTQG- 195
Query: 382 ANQDIINFHGQTAYSIAK 399
A+ I N +T +AK
Sbjct: 196 ASIYIENKEEKTPLQVAK 213
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 18/119 (15%)
Query: 184 SPLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPAL 243
+PL+ A +I +LE N D + + + A + G LKM+H +
Sbjct: 108 TPLHYAASKNRHEIAVMLLEG-GANPDAKDHYDATAMHRAAAK----GNLKMVH-----I 157
Query: 244 LL-------IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASAN 295
LL IQD + NTP+H A + +E +FL S+ N+E P +A
Sbjct: 158 LLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV-TQGASIYIENKEEKTPLQVAKGG 215
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 40/129 (31%), Positives = 58/129 (44%), Gaps = 7/129 (5%)
Query: 248 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEK 307
D TP+H AA H E V+ L D V ++ +G P H A+ NG V+ K
Sbjct: 34 DSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISK 92
Query: 308 ENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALY 367
++ G+ LH AA+ G + V+ +L + D +N D DG TPL LA +
Sbjct: 93 G---ADVNAKDSDGRTPLHHAAENGHKEVVK-LLISKGAD--VNTSDSDGRTPLDLAREH 146
Query: 368 GRHLAAAIL 376
G +L
Sbjct: 147 GNEEVVKLL 155
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 7/131 (5%)
Query: 274 NPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGK 333
N V + +G P H A+ NG V+ K ++ G+ LH AA+ G
Sbjct: 26 NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKG---ADVNAKDSDGRTPLHHAAENGH 82
Query: 334 SDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQT 393
+ V+ +L + D +N D DG TPLH AA G +L+ G A+ + + G+T
Sbjct: 83 KEVVK-LLISKGAD--VNAKDSDGRTPLHHAAENGHKEVVKLLISKG-ADVNTSDSDGRT 138
Query: 394 AYSIAKQKSAE 404
+A++ E
Sbjct: 139 PLDLAREHGNE 149
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 36/164 (21%)
Query: 77 ITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLMEMKNVRGNTALH 136
+ +S TPLH AA G + K+L+ S DV K+ G T LH
Sbjct: 30 VNASDSDGRTPLHHAAENGHKEVVKLLI----------SKGADVNA----KDSDGRTPLH 75
Query: 137 EALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNED 196
A +N KE V LL+S D NA K+ D ++PL+ A E+ +++
Sbjct: 76 HAA---------ENGHKEV-VKLLISKG-----ADVNA---KDSDGRTPLHHAAENGHKE 117
Query: 197 ILKYIL-EALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDK 239
++K ++ + VN + +G++P+ +A E ++K++ +
Sbjct: 118 VVKLLISKGADVN---TSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 328 AAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
AA+ G D V+ +++ +N D DG TPLH AA G +L+ G
Sbjct: 11 AAENGNKDRVKDLIENG---ADVNASDSDGRTPLHHAAENGHKEVVKLLISKG 60
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 6/150 (4%)
Query: 252 NTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMP 311
+TP+HWA HL V L + D L + EG HLA+ G ++ K
Sbjct: 77 STPLHWATRQGHLSMVVQLMKYGADPSL-IDGEGCSCIHLAAQFGHTSIVAYLIAK---G 132
Query: 312 PPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHL 371
++++ G L AA + S R+L N+ + + NT LH A L G
Sbjct: 133 QDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHK-NTALHWAVLAGNTT 191
Query: 372 AAAILVWDGRANQDIINFHGQTAYSIAKQK 401
++L+ + AN D N G++A +AKQ+
Sbjct: 192 VISLLL-EAGANVDAQNIKGESALDLAKQR 220
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 8/147 (5%)
Query: 258 AASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELL 317
AA+ + VR L N V ++ G P HLA+ANG++ ++ E K
Sbjct: 13 AAAAGQDDEVRILMA-NGADVNATDDNGLTPLHLAAANGQLEIV-EVLLKNG--ADVNAS 68
Query: 318 NTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILV 377
++ G LH+AA G + V +LK +N D G TPLHLAAL G+ +L+
Sbjct: 69 DSAGITPLHLAAYDGHLEIVEVLLKHG---ADVNAYDRAGWTPLHLAALSGQLEIVEVLL 125
Query: 378 WDGRANQDIINFHGQTAYSIAKQKSAE 404
G A+ + + G TA+ I+ + E
Sbjct: 126 KHG-ADVNAQDALGLTAFDISINQGQE 151
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
G+ +L AA G+ D VR IL A+ D +N DD+G TPLHLAA G+ +L+ +G
Sbjct: 7 GKKLLEAAAA-GQDDEVR-ILMANGAD--VNATDDNGLTPLHLAAANGQLEIVEVLLKNG 62
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 212 ATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLY 271
AT G +P+ +A +L +++++ K A + D TP+H AA HLE V L
Sbjct: 34 ATDDNGLTPLHLAAANGQLEIVEVLL-KNGADVNASDSAGITPLHLAAYDGHLEIVEVLL 92
Query: 272 EINPDSVLQRNEEGFYPFHLASANGRVRVM 301
+ D V + G+ P HLA+ +G++ ++
Sbjct: 93 KHGAD-VNAYDRAGWTPLHLAALSGQLEIV 121
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 82/198 (41%), Gaps = 41/198 (20%)
Query: 234 KMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLAS 293
+++ DK A QD + T +HWA S H E V FL ++ V +++ G+ P H+A+
Sbjct: 25 RILADKSLATRTDQDSR--TALHWACSAGHTEIVEFLLQLGV-PVNDKDDAGWSPLHIAA 81
Query: 294 ANGRVRVMGEFFEK--------ENMPPPTELLNTKGQN---------------------- 323
+ G ++ K +N P +K ++
Sbjct: 82 SAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDAT 141
Query: 324 ILHVAAKKGKSDTVRRIL--KASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGR 381
+H AA KG V +L KAS N D +GNTPLHLA R A LV G
Sbjct: 142 AMHRAAAKGNLKMVHILLFYKAST-----NIQDTEGNTPLHLACDEERVEEAKFLVTQG- 195
Query: 382 ANQDIINFHGQTAYSIAK 399
A+ I N +T +AK
Sbjct: 196 ASIYIENKEEKTPLQVAK 213
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 18/119 (15%)
Query: 184 SPLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPAL 243
+PL+ A +I +LE N D + + + A + G LKM+H +
Sbjct: 108 TPLHYAASKNRHEIAVMLLEG-GANPDAKDHYDATAMHRAAAK----GNLKMVH-----I 157
Query: 244 LL-------IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASAN 295
LL IQD + NTP+H A + +E +FL S+ N+E P +A
Sbjct: 158 LLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV-TQGASIYIENKEEKTPLQVAKGG 215
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
G LHVAA KG ++ ++ +++A +N D DG TPLH AA +G+ A ILV +
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQAR---YDVNIKDYDGWTPLHAAAHWGKEEACRILV-EN 254
Query: 381 RANQDIINFHGQTAYSIAKQ 400
+ + +N GQTA+ +A +
Sbjct: 255 LCDMEAVNKVGQTAFDVADE 274
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 253 TPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRV 300
T +H A D+++ V+FL E N ++ Q + EG+ P H A++ G + +
Sbjct: 75 TALHQACIDDNVDMVKFLVE-NGANINQPDNEGWIPLHAAASCGYLDI 121
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 7/130 (5%)
Query: 247 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFE 306
D+Q +TP+H AA + H E V L + D V R+ +G+ P HLA+ NG + ++ E
Sbjct: 43 HDDQGSTPLHLAAWIGHPEIVEVLLKHGAD-VNARDTDGWTPLHLAADNGHLEIV-EVLL 100
Query: 307 KENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAAL 366
K + + G LH+AA +G + V +LK +N D G T ++
Sbjct: 101 KYGADVNAQ--DAYGLTPLHLAADRGHLEIVEVLLKHG---ADVNAQDKFGKTAFDISID 155
Query: 367 YGRHLAAAIL 376
G A IL
Sbjct: 156 NGNEDLAEIL 165
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
G+ +L AA+ G+ D VR IL A+ D +N DD G+TPLHLAA G +L+ G
Sbjct: 15 GKKLLE-AARAGQDDEVR-ILMANGAD--VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHG 70
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 318 NTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILV 377
+ +G LH+AA G + V +LK +N D DG TPLHLAA G HL ++
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKHG---ADVNARDTDGWTPLHLAADNG-HLEIVEVL 99
Query: 378 WDGRANQDIINFHGQTAYSIAKQK 401
A+ + + +G T +A +
Sbjct: 100 LKYGADVNAQDAYGLTPLHLAADR 123
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 7/127 (5%)
Query: 184 SPLYLAVESKNEDILKYILE-ALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPA 242
+PL+LA + +I++ +L+ VN A +G +P+ +A + L +++++ K A
Sbjct: 49 TPLHLAAWIGHPEIVEVLLKHGADVN---ARDTDGWTPLHLAADNGHLEIVEVLL-KYGA 104
Query: 243 LLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMG 302
+ QD TP+H AA HLE V L + D V +++ G F ++ NG +
Sbjct: 105 DVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGN-EDLA 162
Query: 303 EFFEKEN 309
E +K N
Sbjct: 163 EILQKLN 169
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 17/163 (10%)
Query: 258 AASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELL 317
AA + VR L N V + G P HLA+ +G + ++ + +++
Sbjct: 21 AARAGQDDEVRILMA-NGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVF 79
Query: 318 NTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILV 377
G LH+AA G + V +LK +N MD DG TPLHLAA +G +L+
Sbjct: 80 ---GYTPLHLAAYWGHLEIVEVLLKNG---ADVNAMDSDGMTPLHLAAKWGYLEIVEVLL 133
Query: 378 WDGRANQDIINFHGQTAYSIAKQKSAEINPEFFGNDDDADQLR 420
G A+ + + G+TA+ I+ GN+D A+ L+
Sbjct: 134 KHG-ADVNAQDKFGKTAFDISIDN---------GNEDLAEILQ 166
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 7/129 (5%)
Query: 248 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEK 307
D TP+H AA HLE V L + D V + G+ P HLA+ G + ++ E K
Sbjct: 44 DNTGTTPLHLAAYSGHLEIVEVLLKHGAD-VDASDVFGYTPLHLAAYWGHLEIV-EVLLK 101
Query: 308 ENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALY 367
+++ G LH+AAK G + V +LK +N D G T ++
Sbjct: 102 NG--ADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHG---ADVNAQDKFGKTAFDISIDN 156
Query: 368 GRHLAAAIL 376
G A IL
Sbjct: 157 GNEDLAEIL 165
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 285 GFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKAS 344
G P HLA+ NG + V+ E + G+ LH+AA+ G + V+ +L+A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAG---ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 345 NIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRA 382
+N D +G TPLHLAA G HL L+ + A
Sbjct: 59 ---ADVNAKDKNGRTPLHLAARNG-HLEVVKLLLEAGA 92
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 217 GKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPD 276
G++P+ +A L ++K++ + A + +D+ TP+H AA HLE V+ L E D
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 277 SVLQRNEEGFYPFHLASANGRVRVMGEFFE 306
V +++ G P HLA+ NG + V+ E
Sbjct: 61 -VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
G+ LH+AA+ G + V+ +L+A +N D +G TPLHLAA G HL L+ +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAG---ADVNAKDKNGRTPLHLAARNG-HLEVVKLLLEA 57
Query: 381 RANQDIINFHGQTAYSIAKQ 400
A+ + + +G+T +A +
Sbjct: 58 GADVNAKDKNGRTPLHLAAR 77
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 183 KSPLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPA 242
++PL+LA + + +++K +LEA D A G++P+ +A L ++K++ + A
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGA--DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-A 59
Query: 243 LLLIQDEQMNTPMHWAASVDHLEGVRFLYE 272
+ +D+ TP+H AA HLE V+ L E
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 36.2 bits (82), Expect = 0.068, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 34/120 (28%)
Query: 86 TPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLMEMKNVRGNTALH-EALNALLD 144
TPLH+AAR G L+ K+L++ DV K+ G T LH A N L
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGA----------DVNA----KDKNGRTPLHLAARNGHL- 48
Query: 145 AKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYILEA 204
E V LL+ + ++D N ++PL+LA + + +++K +LEA
Sbjct: 49 ----------EVVKLLLEAGADVNAKDKNG--------RTPLHLAARNGHLEVVKLLLEA 90
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 258 AASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELL 317
AA + VR L N V + G+ P HLA+ NG + ++ E K +
Sbjct: 21 AARAGRDDEVRILMA-NGADVNAEDASGWTPLHLAAFNGHLEIV-EVLLKNG--ADVNAV 76
Query: 318 NTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILV 377
+ G L +AA G + V +LK +N D +G+TPLHLAA++G +L+
Sbjct: 77 DHAGMTPLRLAALFGHLEIVEVLLKNG---ADVNANDMEGHTPLHLAAMFGHLEIVEVLL 133
Query: 378 WDGRANQDIINFHGQTAYSIAKQKSAEINPEFFGNDDDADQLR 420
+G A+ + + G+TA+ I+ GN+D A+ L+
Sbjct: 134 KNG-ADVNAQDKFGKTAFDISIDN---------GNEDLAEILQ 166
Score = 32.7 bits (73), Expect = 0.76, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Query: 184 SPLYLAVESKNEDILKYILE-ALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPA 242
+PL+LA + + +I++ +L+ VN A G +P+++A L +++++ K A
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKNGADVN---AVDHAGMTPLRLAALFGHLEIVEVLL-KNGA 104
Query: 243 LLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMG 302
+ D + +TP+H AA HLE V L + N V +++ G F ++ NG +
Sbjct: 105 DVNANDMEGHTPLHLAAMFGHLEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGN-EDLA 162
Query: 303 EFFEKEN 309
E +K N
Sbjct: 163 EILQKLN 169
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 11/158 (6%)
Query: 246 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLAS-----ANGRVRV 300
I D NT +H++ S + V+ L + V ++N G+ P L + +
Sbjct: 106 IADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIET 165
Query: 301 MGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTP 360
+ + F N+ + GQ L +A G+ D V+ +L A D +N DDDG+T
Sbjct: 166 VLQLFRLGNINAKA---SQAGQTALMLAVSHGRVDVVKALL-ACEAD--VNVQDDDGSTA 219
Query: 361 LHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIA 398
L A +G A +L+ + + + G TA +A
Sbjct: 220 LMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVA 257
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 258 AASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELL 317
AA + VR L N V R+ G+ P HLA+ G + ++ E K +
Sbjct: 21 AARAGQDDEVRILMA-NGADVNARDFTGWTPLHLAAHFGHLEIV-EVLLKNGADVNAK-- 76
Query: 318 NTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILV 377
++ G LH+AA++G + V +LK +N D G TPLHLAA G +L+
Sbjct: 77 DSLGVTPLHLAARRGHLEIVEVLLKNG---ADVNASDSHGFTPLHLAAKRGHLEIVEVLL 133
Query: 378 WDGRANQDIINFHGQTAYSIAKQKSAEINPEFFGNDDDADQLR 420
+G A+ + + G+TA+ I+ GN+D A+ L+
Sbjct: 134 KNG-ADVNAQDKFGKTAFDISIDN---------GNEDLAEILQ 166
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Query: 253 TPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPP 312
TP+H AA HLE V L + N V ++ G P HLA+ G + ++ E K
Sbjct: 49 TPLHLAAHFGHLEIVEVLLK-NGADVNAKDSLGVTPLHLAARRGHLEIV-EVLLKNG--A 104
Query: 313 PTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLA 372
++ G LH+AAK+G + V +LK +N D G T ++ G
Sbjct: 105 DVNASDSHGFTPLHLAAKRGHLEIVEVLLKNG---ADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 373 AAIL 376
A IL
Sbjct: 162 AEIL 165
Score = 35.4 bits (80), Expect = 0.099, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
G+ +L AA+ G+ D VR IL A+ D +N D G TPLHLAA +G +L+ +G
Sbjct: 15 GKKLLE-AARAGQDDEVR-ILMANGAD--VNARDFTGWTPLHLAAHFGHLEIVEVLLKNG 70
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 17/163 (10%)
Query: 258 AASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELL 317
AA + VR L N V + G P HLA+ G + ++ E K +
Sbjct: 21 AARAGQDDEVRILMA-NGADVNATDASGLTPLHLAATYGHLEIV-EVLLKHG--ADVNAI 76
Query: 318 NTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILV 377
+ G LH+AA G + V +LK +N +D G+TPLHLAA+ G HL ++
Sbjct: 77 DIXGSTPLHLAALIGHLEIVEVLLKHG---ADVNAVDTWGDTPLHLAAIMG-HLEIVEVL 132
Query: 378 WDGRANQDIINFHGQTAYSIAKQKSAEINPEFFGNDDDADQLR 420
A+ + + G+TA+ I+ GN+D A+ L+
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDN---------GNEDLAEILQ 166
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
G+ +L AA+ G+ D VR IL A+ D +N D G TPLHLAA YG HL ++
Sbjct: 15 GKKLLE-AARAGQDDEVR-ILMANGAD--VNATDASGLTPLHLAATYG-HLEIVEVLLKH 69
Query: 381 RANQDIINFHGQTAYSIA 398
A+ + I+ G T +A
Sbjct: 70 GADVNAIDIXGSTPLHLA 87
Score = 32.7 bits (73), Expect = 0.63, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Query: 184 SPLYLAVESKNEDILKYILE-ALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPA 242
+PL+LA + +I++ +L+ VN A + G +P+ +A + L +++++ K A
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHGADVN---AIDIXGSTPLHLAALIGHLEIVEVLL-KHGA 104
Query: 243 LLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMG 302
+ D +TP+H AA + HLE V L + D V +++ G F ++ NG +
Sbjct: 105 DVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGN-EDLA 162
Query: 303 EFFEKEN 309
E +K N
Sbjct: 163 EILQKLN 169
Score = 32.3 bits (72), Expect = 0.86, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 212 ATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLY 271
AT G +P+ +A L +++++ K A + D +TP+H AA + HLE V L
Sbjct: 42 ATDASGLTPLHLAATYGHLEIVEVLL-KHGADVNAIDIXGSTPLHLAALIGHLEIVEVLL 100
Query: 272 EINPDSVLQRNEEGFYPFHLASANGRVRVM 301
+ D V + G P HLA+ G + ++
Sbjct: 101 KHGAD-VNAVDTWGDTPLHLAAIMGHLEIV 129
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 17/163 (10%)
Query: 258 AASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELL 317
AA + VR L N V + G P HLA+ G + ++ E K +
Sbjct: 21 AARAGQDDEVRILMA-NGADVNATDASGLTPLHLAATYGHLEIV-EVLLKHG--ADVNAI 76
Query: 318 NTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILV 377
+ G LH+AA G + V +LK +N +D G+TPLHLAA+ G HL ++
Sbjct: 77 DIMGSTPLHLAALIGHLEIVEVLLKHG---ADVNAVDTWGDTPLHLAAIMG-HLEIVEVL 132
Query: 378 WDGRANQDIINFHGQTAYSIAKQKSAEINPEFFGNDDDADQLR 420
A+ + + G+TA+ I+ GN+D A+ L+
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDN---------GNEDLAEILQ 166
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
G+ +L AA+ G+ D VR IL A+ D +N D G TPLHLAA YG HL ++
Sbjct: 15 GKKLLE-AARAGQDDEVR-ILMANGAD--VNATDASGLTPLHLAATYG-HLEIVEVLLKH 69
Query: 381 RANQDIINFHGQTAYSIA 398
A+ + I+ G T +A
Sbjct: 70 GADVNAIDIMGSTPLHLA 87
Score = 32.3 bits (72), Expect = 0.78, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 212 ATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLY 271
AT G +P+ +A L +++++ K A + D +TP+H AA + HLE V L
Sbjct: 42 ATDASGLTPLHLAATYGHLEIVEVLL-KHGADVNAIDIMGSTPLHLAALIGHLEIVEVLL 100
Query: 272 EINPDSVLQRNEEGFYPFHLASANGRVRVM 301
+ D V + G P HLA+ G + ++
Sbjct: 101 KHGAD-VNAVDTWGDTPLHLAAIMGHLEIV 129
Score = 32.3 bits (72), Expect = 0.85, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Query: 184 SPLYLAVESKNEDILKYILE-ALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPA 242
+PL+LA + +I++ +L+ VN A + G +P+ +A + L +++++ K A
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHGADVN---AIDIMGSTPLHLAALIGHLEIVEVLL-KHGA 104
Query: 243 LLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMG 302
+ D +TP+H AA + HLE V L + D V +++ G F ++ NG +
Sbjct: 105 DVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGN-EDLA 162
Query: 303 EFFEKEN 309
E +K N
Sbjct: 163 EILQKLN 169
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 66/136 (48%), Gaps = 16/136 (11%)
Query: 285 GFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKAS 344
G+ P HLA+ G + ++ E K +T G LH+AA G + V +LK
Sbjct: 47 GWTPLHLAAYWGHLEIV-EVLLKNG--ADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNG 103
Query: 345 NIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIAKQKSAE 404
+N DD+G TPLHLAA G HL ++ A+ + + G+TA+ I+
Sbjct: 104 ---ADVNAKDDNGITPLHLAANRG-HLEIVEVLLKYGADVNAQDKFGKTAFDIS------ 153
Query: 405 INPEFFGNDDDADQLR 420
IN GN+D A+ L+
Sbjct: 154 INN---GNEDLAEILQ 166
Score = 35.8 bits (81), Expect = 0.081, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
G+ +L AA+ G+ D VR IL A+ D +N D G TPLHLAA +G +L+ +G
Sbjct: 15 GKKLLE-AARAGRDDEVR-ILMANGAD--VNAADVVGWTPLHLAAYWGHLEIVEVLLKNG 70
Score = 32.3 bits (72), Expect = 0.91, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 7/127 (5%)
Query: 184 SPLYLAVESKNEDILKYILE-ALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPA 242
+PL+LA + +I++ +L+ VN A G +P+ +A L +++++ K A
Sbjct: 49 TPLHLAAYWGHLEIVEVLLKNGADVN---AYDTLGSTPLHLAAHFGHLEIVEVLL-KNGA 104
Query: 243 LLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMG 302
+ +D+ TP+H AA+ HLE V L + D V +++ G F ++ NG +
Sbjct: 105 DVNAKDDNGITPLHLAANRGHLEIVEVLLKYGAD-VNAQDKFGKTAFDISINNGN-EDLA 162
Query: 303 EFFEKEN 309
E +K N
Sbjct: 163 EILQKLN 169
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 13/103 (12%)
Query: 318 NTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILV 377
+ KG LH+AA + V +LK +N D+DG+TPLHLAAL+G HL ++
Sbjct: 44 DRKGNTPLHLAADYDHLEIVEVLLKHG---ADVNAHDNDGSTPLHLAALFG-HLEIVEVL 99
Query: 378 WDGRANQDIINFHGQTAYSIAKQKSAEINPEFFGNDDDADQLR 420
A+ + + G+TA+ I+ GN+D A+ L+
Sbjct: 100 LKHGADVNAQDKFGKTAFDISIDN---------GNEDLAEILQ 133
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 248 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVM 301
D + NTP+H AA DHLE V L + D V + +G P HLA+ G + ++
Sbjct: 44 DRKGNTPLHLAADYDHLEIVEVLLKHGAD-VNAHDNDGSTPLHLAALFGHLEIV 96
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALY 367
G+ +L AA+ G+ D VR IL A+ D +N D GNTPLHLAA Y
Sbjct: 15 GKKLLE-AARAGQDDEVR-ILMANGAD--VNANDRKGNTPLHLAADY 57
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 212 ATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLY 271
A +G +P+ +A + L +++++ K A + D +TP+H AA HLE V L
Sbjct: 42 ANDRKGNTPLHLAADYDHLEIVEVLL-KHGADVNAHDNDGSTPLHLAALFGHLEIVEVLL 100
Query: 272 EINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKEN 309
+ D V +++ G F ++ NG + E +K N
Sbjct: 101 KHGAD-VNAQDKFGKTAFDISIDNGN-EDLAEILQKLN 136
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 14/95 (14%)
Query: 281 RNEEGFYPFHLASANGRVRVMGEFFEKENMPP--------PTELLNTK---GQNILHVAA 329
R +GF P +AS +G G E+E+ P L N G+ LH+AA
Sbjct: 6 RGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAA 65
Query: 330 KKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLA 364
+ +SD +R+L+AS N D+ G TPLH A
Sbjct: 66 RYSRSDAAKRLLEAS---ADANIQDNMGRTPLHAA 97
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 79 MQNSKRDTPLHVAARAGMLQTAKILVD 105
MQN++ +TPL +AAR G +TAK+L+D
Sbjct: 185 MQNNREETPLFLAAREGSYETAKVLLD 211
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 14/95 (14%)
Query: 281 RNEEGFYPFHLASANGRVRVMGEFFEKENMPP--------PTELLNTK---GQNILHVAA 329
R +GF P +AS +G G E+E+ P L N G+ LH+AA
Sbjct: 7 RGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAA 66
Query: 330 KKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLA 364
+ +SD +R+L+AS N D+ G TPLH A
Sbjct: 67 RYSRSDAAKRLLEAS---ADANIQDNMGRTPLHAA 98
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 79 MQNSKRDTPLHVAARAGMLQTAKILVD 105
MQN++ +TPL +AAR G +TAK+L+D
Sbjct: 186 MQNNREETPLFLAAREGSYETAKVLLD 212
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 315 ELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAA 374
+L + G ++H AA+ G+ DT++ +L+ +N D++GN PLHLAA G
Sbjct: 64 DLKDRTGFAVIHDAARAGQLDTLQTLLE---FQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 375 ILVWDGRANQDIINFHGQTAYSIAK 399
LV +N N G TA +A+
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLAR 145
Score = 36.2 bits (82), Expect = 0.065, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 246 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVM 301
I+D + N P+H AA HL V FL + +V RN +G LA GR V+
Sbjct: 98 IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV 153
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 12/109 (11%)
Query: 274 NPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGK 333
NPD ++ GF H A+ G++ + E + + + +G LH+AAK+G
Sbjct: 62 NPD---LKDRTGFAVIHDAARAGQLDTLQTLLEFQ---ADVNIEDNEGNLPLHLAAKEGH 115
Query: 334 SDTVRRILK--ASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
V ++K ASN+ + G+T LA LYGR+ +++ +G
Sbjct: 116 LRVVEFLVKHTASNV----GHRNHKGDTACDLARLYGRNEVVSLMQANG 160
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
G+ +L AA+ G+ D VR IL A+ D +N D G+TPLHLAA G +L+ +G
Sbjct: 15 GKKLLE-AARAGQDDEVR-ILMANGAD--VNAEDTYGDTPLHLAARVGHLEIVEVLLKNG 70
Query: 381 RANQDIINFHGQTAYSIAKQK 401
A+ + ++F G T +A ++
Sbjct: 71 -ADVNALDFSGSTPLHLAAKR 90
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 7/130 (5%)
Query: 247 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFE 306
+D +TP+H AA V HLE V L + N V + G P HLA+ G + ++ E
Sbjct: 43 EDTYGDTPLHLAARVGHLEIVEVLLK-NGADVNALDFSGSTPLHLAAKRGHLEIV-EVLL 100
Query: 307 KENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAAL 366
K + +T G LH+AA G + V +LK +N D G T ++
Sbjct: 101 KYGADVNAD--DTIGSTPLHLAADTGHLEIVEVLLKYG---ADVNAQDKFGKTAFDISID 155
Query: 367 YGRHLAAAIL 376
G A IL
Sbjct: 156 NGNEDLAEIL 165
Score = 36.6 bits (83), Expect = 0.047, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 318 NTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGR-HLAAAIL 376
+T G LH+AA+ G + V +LK +N +D G+TPLHLAA G + +L
Sbjct: 44 DTYGDTPLHLAARVGHLEIVEVLLKNG---ADVNALDFSGSTPLHLAAKRGHLEIVEVLL 100
Query: 377 VWDGRANQD 385
+ N D
Sbjct: 101 KYGADVNAD 109
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 32/127 (25%)
Query: 77 ITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLMEMKNVRGNTALH 136
+ +++ DTPLH+AAR G L+ ++L+ + DV L + G+T LH
Sbjct: 40 VNAEDTYGDTPLHLAARVGHLEIVEVLL----------KNGADVNAL----DFSGSTPLH 85
Query: 137 EALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNED 196
L AK+ E V +L+ + ++D S +PL+LA ++ + +
Sbjct: 86 ------LAAKRG----HLEIVEVLLKYGADVNADDTIGS--------TPLHLAADTGHLE 127
Query: 197 ILKYILE 203
I++ +L+
Sbjct: 128 IVEVLLK 134
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
G+ LH+AA KG + V +LK +N D G+TPLHLAALYG +L+ +G
Sbjct: 47 GKTPLHLAAIKGHLEIVEVLLKHG---ADVNAADKMGDTPLHLAALYGHLEIVEVLLKNG 103
Query: 381 RANQDIINFHGQTAYSIA 398
A+ + + +G T +A
Sbjct: 104 -ADVNATDTYGFTPLHLA 120
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
G+ +L AA+ G+ D VR IL A+ D +N DD G TPLHLAA+ G +L+ G
Sbjct: 15 GKKLLE-AARAGQDDEVR-ILMANGAD--VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHG 70
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 56/130 (43%), Gaps = 7/130 (5%)
Query: 247 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFE 306
+D+ TP+H AA HLE V L + D V ++ G P HLA+ G + ++ E
Sbjct: 43 EDDSGKTPLHLAAIKGHLEIVEVLLKHGAD-VNAADKMGDTPLHLAALYGHLEIV-EVLL 100
Query: 307 KENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAAL 366
K +T G LH+AA G + V +LK +N D G T ++
Sbjct: 101 KNG--ADVNATDTYGFTPLHLAADAGHLEIVEVLLKYG---ADVNAQDKFGKTAFDISID 155
Query: 367 YGRHLAAAIL 376
G A IL
Sbjct: 156 NGNEDLAEIL 165
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 315 ELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAA 374
+L + G ++H AA+ G DT++ +L+ +N D++GN PLHLAA G
Sbjct: 64 DLKDRTGNAVIHDAARAGFLDTLQTLLE---FQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 375 ILVWDGRANQDIINFHGQTAYSIAK 399
LV +N N G TA +A+
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLAR 145
Score = 36.2 bits (82), Expect = 0.068, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 246 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVM 301
I+D + N P+H AA HL V FL + +V RN +G LA GR V+
Sbjct: 98 IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV 153
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 318 NTKGQNILHVAAKKGKSDTVRRILK--ASNIDTLINEMDDDGNTPLHLAALYGRHLAAAI 375
+ +G LH+AAK+G V ++K ASN+ + G+T LA LYGR+ ++
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNV----GHRNHKGDTACDLARLYGRNEVVSL 155
Query: 376 LVWDG 380
+ +G
Sbjct: 156 MQANG 160
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 14/100 (14%)
Query: 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
G+ +L AA+ G+ D VR IL A+ D +N D DG TPLHLAA G HL ++
Sbjct: 3 GKKLLE-AARAGQDDEVR-ILMANGAD--VNAKDKDGYTPLHLAAREG-HLEIVEVLLKA 57
Query: 381 RANQDIINFHGQTAYSIAKQKSAEINPEFFGNDDDADQLR 420
A+ + + G+TA+ I+ GN+D A+ L+
Sbjct: 58 GADVNAQDKFGKTAFDISIDN---------GNEDLAEILQ 88
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 16/136 (11%)
Query: 285 GFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKAS 344
G P HL NG + ++ + + G LH+AA +G + V +LK
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLK---YAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYG 103
Query: 345 NIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIAKQKSAE 404
+N MD G TPLHLAA G HL ++ A+ + + G+TA+ I+
Sbjct: 104 ---ADVNAMDYQGYTPLHLAAEDG-HLEIVEVLLKYGADVNAQDKFGKTAFDISIDN--- 156
Query: 405 INPEFFGNDDDADQLR 420
GN+D A+ L+
Sbjct: 157 ------GNEDLAEILQ 166
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Query: 184 SPLYLAVESKNEDILKYILE-ALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPA 242
+PL+L V + + +I++ +L+ A VN A+ G +P+ +A L +++++ K A
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKYAADVN---ASDKSGWTPLHLAAYRGHLEIVEVLL-KYGA 104
Query: 243 LLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMG 302
+ D Q TP+H AA HLE V L + D V +++ G F ++ NG +
Sbjct: 105 DVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD-VNAQDKFGKTAFDISIDNGN-EDLA 162
Query: 303 EFFEKEN 309
E +K N
Sbjct: 163 EILQKLN 169
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 16/136 (11%)
Query: 285 GFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKAS 344
G P H+A+A G + ++ ++T G LH+AA G + V +LK
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRNG---ADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYG 91
Query: 345 NIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIAKQKSAE 404
+N D G TPL+LAA +G HL ++ A+ + + G+TA+ I+
Sbjct: 92 ---ADVNAKDATGITPLYLAAYWG-HLEIVEVLLKHGADVNAQDKFGKTAFDISID---- 143
Query: 405 INPEFFGNDDDADQLR 420
GN+D A+ L+
Sbjct: 144 -----IGNEDLAEILQ 154
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
G+ +L AA+ G+ D VR IL A+ D N D G TPLH+AA G +L+ +G
Sbjct: 3 GKKLLE-AARAGQDDEVR-ILMANGADA--NAYDHYGRTPLHMAAAVGHLEIVEVLLRNG 58
Query: 381 RANQDIINFHGQTAYSIA 398
A+ + ++ +G T +A
Sbjct: 59 -ADVNAVDTNGTTPLHLA 75
Score = 36.2 bits (82), Expect = 0.066, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 217 GKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPD 276
G++P+ +A + L +++++ + A + D TP+H AAS+ HLE V L + D
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLL-RNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGAD 93
Query: 277 SVLQRNEEGFYPFHLASANGRVRVM 301
V ++ G P +LA+ G + ++
Sbjct: 94 -VNAKDATGITPLYLAAYWGHLEIV 117
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 16/139 (11%)
Query: 282 NEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRIL 341
+ G P HLA+ +G + ++ E K + + G LH+AA G + V +L
Sbjct: 44 DNTGLTPLHLAAVSGHLEIV-EVLLKHG--ADVDAADVYGFTPLHLAAMTGHLEIVEVLL 100
Query: 342 KASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIAKQK 401
K +N D G+TPLHLAA G HL ++ A+ + + G+TA+ I+
Sbjct: 101 KYG---ADVNAFDMTGSTPLHLAADEG-HLEIVEVLLKYGADVNAQDKFGKTAFDISIDN 156
Query: 402 SAEINPEFFGNDDDADQLR 420
GN+D A R
Sbjct: 157 ---------GNEDLAKSCR 166
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
G+ +L AA+ G+ D VR IL A+ D +N +D+ G TPLHLAA+ G HL ++
Sbjct: 15 GKKLLE-AARAGQDDEVR-ILIANGAD--VNAVDNTGLTPLHLAAVSG-HLEIVEVLLKH 69
Query: 381 RANQDIINFHGQTAYSIA 398
A+ D + +G T +A
Sbjct: 70 GADVDAADVYGFTPLHLA 87
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 253 TPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVM 301
TP+H AA HLE V L + D V + G P HLA+ G + ++
Sbjct: 82 TPLHLAAMTGHLEIVEVLLKYGAD-VNAFDMTGSTPLHLAADEGHLEIV 129
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 5/132 (3%)
Query: 165 RSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVKVA 224
R L++ + + + N +PL+LA S + +I++ +L+ D A + G +P+ +A
Sbjct: 31 RILIANGADVNAVDNTGL-TPLHLAAVSGHLEIVEVLLKHGADVD--AADVYGFTPLHLA 87
Query: 225 IELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEE 284
L +++++ K A + D +TP+H AA HLE V L + D V +++
Sbjct: 88 AMTGHLEIVEVLL-KYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGAD-VNAQDKF 145
Query: 285 GFYPFHLASANG 296
G F ++ NG
Sbjct: 146 GKTAFDISIDNG 157
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 14/111 (12%)
Query: 310 MPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGR 369
+P + + + G+ +L AA+ G+ D VR IL A+ D + D +G+TPLHLAA G
Sbjct: 14 VPRGSHMGSDLGKKLLE-AARAGQDDEVR-ILMANGAD--VAAKDKNGSTPLHLAARNG- 68
Query: 370 HLAAAILVWDGRANQDIINFHGQTAYSIAKQKSAEINPEFFGNDDDADQLR 420
HL L+ + A+ + G+TA+ I+ GN+D A+ L+
Sbjct: 69 HLEVVKLLLEAGADVXAQDKFGKTAFDISIDN---------GNEDLAEILQ 110
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 247 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANG 296
+D+ +TP+H AA HLE V+ L E D V +++ G F ++ NG
Sbjct: 53 KDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDISIDNG 101
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 17/163 (10%)
Query: 258 AASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELL 317
AA + VR L N V + G+ P HLA+ G + ++ E K +
Sbjct: 21 AARAGQDDEVRILMA-NGADVNASDHVGWTPLHLAAYFGHLEIV-EVLLKNGADVNAD-- 76
Query: 318 NTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILV 377
++ G LH+AA +G + V +LK +N D +G TPLHLAA G HL ++
Sbjct: 77 DSLGVTPLHLAADRGHLEVVEVLLKNG---ADVNANDHNGFTPLHLAANIG-HLEIVEVL 132
Query: 378 WDGRANQDIINFHGQTAYSIAKQKSAEINPEFFGNDDDADQLR 420
A+ + + G+TA+ I+ GN+D A+ L+
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDN---------GNEDLAEILQ 166
Score = 36.2 bits (82), Expect = 0.064, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
G+ +L AA+ G+ D VR IL A+ D +N D G TPLHLAA +G +L+ +G
Sbjct: 15 GKKLLE-AARAGQDDEVR-ILMANGAD--VNASDHVGWTPLHLAAYFGHLEIVEVLLKNG 70
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Query: 184 SPLYLAVESKNEDILKYILE-ALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPA 242
+PL+LA + +I++ +L+ VN D + G +P+ +A + L +++++ K A
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADVNADDSL---GVTPLHLAADRGHLEVVEVLL-KNGA 104
Query: 243 LLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMG 302
+ D TP+H AA++ HLE V L + D V +++ G F ++ NG +
Sbjct: 105 DVNANDHNGFTPLHLAANIGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGN-EDLA 162
Query: 303 EFFEKEN 309
E +K N
Sbjct: 163 EILQKLN 169
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
Query: 281 RNEEGFYPFHLASANGRVRVMGEFFEKENMPP--------PTELLNTK---GQNILHVAA 329
R +GF P +AS +G G E+E+ P L N G LH+AA
Sbjct: 6 RGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAA 65
Query: 330 KKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLA 364
+SD +R+L+AS N D+ G TPLH A
Sbjct: 66 AYSRSDAAKRLLEAS---ADANIQDNMGRTPLHAA 97
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 79 MQNSKRDTPLHVAARAGMLQTAKILVD 105
MQN++ +TPL +AAR G +TAK+L+D
Sbjct: 185 MQNNREETPLFLAAREGSYETAKVLLD 211
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 48/125 (38%), Gaps = 40/125 (32%)
Query: 252 NTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMP 311
NTP+H AA H E V+ L D V R+++G P HLA+ NG ++
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIV---------- 58
Query: 312 PPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHL 371
+LL KG + +N DGNTP HLA G H
Sbjct: 59 ---KLLLAKGAD--------------------------VNARSKDGNTPEHLAKKNGHHE 89
Query: 372 AAAIL 376
+L
Sbjct: 90 IVKLL 94
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
G LH AAK G ++ V+++L +N DGNTPLHLAA G +L+ G
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKG---ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 381 RANQDIINFHGQTAYSIAKQ 400
A+ + + G T +AK+
Sbjct: 66 -ADVNARSKDGNTPEHLAKK 84
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 14/100 (14%)
Query: 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
G+ +L AA+ G+ D VR IL A+ D + D +G+TPLHLAA G HL L+ +
Sbjct: 7 GKKLLE-AARAGQDDEVR-ILMANGAD--VAAKDKNGSTPLHLAARNG-HLEVVKLLLEA 61
Query: 381 RANQDIINFHGQTAYSIAKQKSAEINPEFFGNDDDADQLR 420
A+ + + G+TA+ I+ GN+D A+ L+
Sbjct: 62 GADVNAQDKFGKTAFDISIDN---------GNEDLAEILQ 92
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 247 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANG 296
+D+ +TP+H AA HLE V+ L E D V +++ G F ++ NG
Sbjct: 35 KDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VNAQDKFGKTAFDISIDNG 83
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 315 ELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAA 374
+L + G ++H AA+ G DT++ +L+ +N D++GN PLHLAA G
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLE---FQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 375 ILVWDGRANQDIINFHGQTAYSIAK 399
LV +N N G TA +A+
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLAR 145
Score = 36.2 bits (82), Expect = 0.064, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 246 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVM 301
I+D + N P+H AA HL V FL + +V RN +G LA GR V+
Sbjct: 98 IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV 153
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 274 NPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGK 333
NPD ++ GF H A+ G + + E + + + +G LH+AAK+G
Sbjct: 62 NPD---LKDRTGFAVIHDAARAGFLDTLQTLLEFQ---ADVNIEDNEGNLPLHLAAKEGH 115
Query: 334 SDTVRRILK--ASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
V ++K ASN+ + G+T LA LYGR+ +++ +G
Sbjct: 116 LRVVEFLVKHTASNV----GHRNHKGDTACDLARLYGRNEVVSLMQANG 160
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 315 ELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAA 374
+L + G ++H AA+ G DT++ +L+ +N D++GN PLHLAA G
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLE---FQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 375 ILVWDGRANQDIINFHGQTAYSIAK 399
LV +N N G TA +A+
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLAR 145
Score = 36.2 bits (82), Expect = 0.067, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 246 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVM 301
I+D + N P+H AA HL V FL + +V RN +G LA GR V+
Sbjct: 98 IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV 153
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 274 NPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGK 333
NPD ++ GF H A+ G + + E + + + +G LH+AAK+G
Sbjct: 62 NPD---LKDRTGFAVIHDAARAGFLDTLQTLLEFQ---ADVNIEDNEGNLPLHLAAKEGH 115
Query: 334 SDTVRRILK--ASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
V ++K ASN+ + G+T LA LYGR+ +++ +G
Sbjct: 116 LRVVEFLVKHTASNV----GHRNHKGDTACDLARLYGRNEVVSLMQANG 160
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 16/136 (11%)
Query: 285 GFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKAS 344
G P HLA+ G + ++ + + G LH+AA G + V +LK
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLK---YGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHG 103
Query: 345 NIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIAKQKSAE 404
+N D +G TPLHLAA Y HL ++ A+ + + G+TA+ I+
Sbjct: 104 ---ADVNAKDYEGFTPLHLAA-YDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDN--- 156
Query: 405 INPEFFGNDDDADQLR 420
GN+D A+ L+
Sbjct: 157 ------GNEDLAEILQ 166
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
G+ +L AA+ G+ D VR IL A+ D +N D G+TPLHLAA G HL ++
Sbjct: 15 GKKLLE-AARAGQDDEVR-ILMANGAD--VNATDWLGHTPLHLAAKTG-HLEIVEVLLKY 69
Query: 381 RANQDIINFHGQTAYSIA 398
A+ + + +G T +A
Sbjct: 70 GADVNAWDNYGATPLHLA 87
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 66/127 (51%), Gaps = 7/127 (5%)
Query: 184 SPLYLAVESKNEDILKYILE-ALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPA 242
+PL+LA ++ + +I++ +L+ VN A G +P+ +A + L +++++ K A
Sbjct: 49 TPLHLAAKTGHLEIVEVLLKYGADVN---AWDNYGATPLHLAADNGHLEIVEVLL-KHGA 104
Query: 243 LLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMG 302
+ +D + TP+H AA HLE V L + D V +++ G F ++ NG +
Sbjct: 105 DVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGAD-VNAQDKFGKTAFDISIDNGN-EDLA 162
Query: 303 EFFEKEN 309
E +K N
Sbjct: 163 EILQKLN 169
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 315 ELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAA 374
+L + G ++H AA+ G DT++ +L+ + D +N D++GN PLHLAA G
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLE-NQAD--VNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 375 ILVWDGRANQDIINFHGQTAYSIAK 399
LV +N N G TA +A+
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLAR 145
Score = 36.2 bits (82), Expect = 0.068, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 246 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVM 301
I+D + N P+H AA HL V FL + +V RN +G LA GR V+
Sbjct: 98 IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV 153
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 274 NPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGK 333
NPD ++ GF H A+ G + + E + + + +G LH+AAK+G
Sbjct: 62 NPD---LKDRTGFAVIHDAARAGFLDTLQTLLENQ---ADVNIEDNEGNLPLHLAAKEGH 115
Query: 334 SDTVRRILK--ASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
V ++K ASN+ + G+T LA LYGR+ +++ +G
Sbjct: 116 LRVVEFLVKHTASNV----GHRNHKGDTACDLARLYGRNEVVSLMQANG 160
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 255 MHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPT 314
+H AA L+ ++ L E D ++ NE G P HLA+ G +RV+ EF K
Sbjct: 74 IHDAARAGFLDTLQTLLENQADVNIEDNE-GNLPLHLAAKEGHLRVV-EFLVKHTASNVG 131
Query: 315 ELLNTKGQNILHVAAKKGKSDTV 337
N KG +A G+++ V
Sbjct: 132 H-RNHKGDTACDLARLYGRNEVV 153
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 27/124 (21%)
Query: 250 QMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKEN 309
+ +TP+H+AA + + V +L + D V +++ G P H A + G V
Sbjct: 43 RQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNACSYGHYEV--------- 92
Query: 310 MPPPTELLNTKGQNI----------LHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNT 359
ELL G + LH AA KGK + + +L+ T N DGNT
Sbjct: 93 ----AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNR---DGNT 145
Query: 360 PLHL 363
PL L
Sbjct: 146 PLDL 149
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 318 NTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGR 369
N++ L AAK G +TV+++ +++ +++ +TPLH AA Y R
Sbjct: 7 NSEADRQLLEAAKAGDVETVKKLCTVQSVNC--RDIEGRQSTPLHFAAGYNR 56
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 13/104 (12%)
Query: 317 LNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAIL 376
++ G LH+AAK+G + V +LK +N D G TPLHLAA G HL +
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHG---ADVNASDSWGRTPLHLAATVG-HLEIVEV 98
Query: 377 VWDGRANQDIINFHGQTAYSIAKQKSAEINPEFFGNDDDADQLR 420
+ + A+ + + G+TA+ I+ GN+D A+ L+
Sbjct: 99 LLEYGADVNAQDKFGKTAFDISIDN---------GNEDLAEILQ 133
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
G+ +L A + G+ D VR IL A+ D +N MDD G TPLHLAA G HL ++
Sbjct: 15 GKKLLE-ATRAGQDDEVR-ILMANGAD--VNAMDDAGVTPLHLAAKRG-HLEIVEVLLKH 69
Query: 381 RANQDIINFHGQTAYSIA 398
A+ + + G+T +A
Sbjct: 70 GADVNASDSWGRTPLHLA 87
Score = 32.3 bits (72), Expect = 0.91, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 217 GKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPD 276
G +P+ +A + L +++++ K A + D TP+H AA+V HLE V L E D
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLL-KHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 277 SVLQRNEEGFYPFHLASANGRVRVMGEFFEKEN 309
V +++ G F ++ NG + E +K N
Sbjct: 106 -VNAQDKFGKTAFDISIDNGN-EDLAEILQKLN 136
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 248 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFE 306
D+ TP+H AA HLE V L + D V + G P HLA+ G + ++ E
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDSWGRTPLHLAATVGHLEIVEVLLE 101
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 27/124 (21%)
Query: 250 QMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKEN 309
+ +TP+H+AA + + V +L + D V +++ G P H A + G V
Sbjct: 41 RQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNACSYGHYEV--------- 90
Query: 310 MPPPTELLNTKGQNI----------LHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNT 359
ELL G + LH AA KGK + + +L+ T N DGNT
Sbjct: 91 ----AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNR---DGNT 143
Query: 360 PLHL 363
PL L
Sbjct: 144 PLDL 147
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 318 NTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGR 369
N++ L AAK G +TV+++ +++ +++ +TPLH AA Y R
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNC--RDIEGRQSTPLHFAAGYNR 54
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 27/124 (21%)
Query: 250 QMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKEN 309
+ +TP+H+AA + + V +L + D V +++ G P H A + G V
Sbjct: 45 RQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNACSYGHYEV--------- 94
Query: 310 MPPPTELLNTKGQNI----------LHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNT 359
ELL G + LH AA KGK + + +L+ T N DGNT
Sbjct: 95 ----AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNR---DGNT 147
Query: 360 PLHL 363
PL L
Sbjct: 148 PLDL 151
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 316 LLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGR 369
L N++ L AAK G +TV+++ +++ +++ +TPLH AA Y R
Sbjct: 7 LGNSEADRQLLEAAKAGDVETVKKLCTVQSVNC--RDIEGRQSTPLHFAAGYNR 58
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
Query: 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHL 371
G+ +L AA+ G+ D VR IL A+ D +N +D+DG TPLHLAA G HL
Sbjct: 15 GKKLLE-AARAGQDDEVR-ILMANGAD--VNALDEDGLTPLHLAAQLG-HL 60
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 13/104 (12%)
Query: 317 LNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAIL 376
L+ G LH+AA+ G + V +LK +N D+ G TPLHLAA+ G HL +
Sbjct: 43 LDEDGLTPLHLAAQLGHLEIVEVLLKYG---ADVNAEDNFGITPLHLAAIRG-HLEIVEV 98
Query: 377 VWDGRANQDIINFHGQTAYSIAKQKSAEINPEFFGNDDDADQLR 420
+ A+ + + G+TA+ I+ GN+D A+ L+
Sbjct: 99 LLKHGADVNAQDKFGKTAFDISIDN---------GNEDLAEILQ 133
Score = 35.4 bits (80), Expect = 0.093, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 248 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVM 301
DE TP+H AA + HLE V L + D V + G P HLA+ G + ++
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGAD-VNAEDNFGITPLHLAAIRGHLEIV 96
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 13/104 (12%)
Query: 317 LNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAIL 376
++ G LH+AAK+G + V +LK +N D G TPLHLAA G HL +
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHG---ADVNARDIWGRTPLHLAATVG-HLEIVEV 98
Query: 377 VWDGRANQDIINFHGQTAYSIAKQKSAEINPEFFGNDDDADQLR 420
+ + A+ + + G+TA+ I+ GN+D A+ L+
Sbjct: 99 LLEYGADVNAQDKFGKTAFDISIDN---------GNEDLAEILQ 133
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
G+ +L A + G+ D VR IL A+ D +N MDD G TPLHLAA G HL ++
Sbjct: 15 GKKLLE-ATRAGQDDEVR-ILMANGAD--VNAMDDAGVTPLHLAAKRG-HLEIVEVLLKH 69
Query: 381 RANQDIINFHGQTAYSIA 398
A+ + + G+T +A
Sbjct: 70 GADVNARDIWGRTPLHLA 87
Score = 32.3 bits (72), Expect = 0.98, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 248 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFE 306
D+ TP+H AA HLE V L + D V R+ G P HLA+ G + ++ E
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNARDIWGRTPLHLAATVGHLEIVEVLLE 101
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 217 GKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPD 276
G +P+ +A + L +++++ K A + +D TP+H AA+V HLE V L E D
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLL-KHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 277 SVLQRNEEGFYPFHLASANGRVRVMGEFFEKEN 309
V +++ G F ++ NG + E +K N
Sbjct: 106 -VNAQDKFGKTAFDISIDNGN-EDLAEILQKLN 136
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 13/104 (12%)
Query: 317 LNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAIL 376
++ G LH+AAK+G + V +LK +N D G TPLHLAA G HL +
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHG---ADVNASDIWGRTPLHLAATVG-HLEIVEV 98
Query: 377 VWDGRANQDIINFHGQTAYSIAKQKSAEINPEFFGNDDDADQLR 420
+ + A+ + + G+TA+ I+ GN+D A+ L+
Sbjct: 99 LLEYGADVNAQDKFGKTAFDISIDN---------GNEDLAEILQ 133
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
G+ +L A + G+ D VR IL A+ D +N MDD G TPLHLAA G HL ++
Sbjct: 15 GKKLLE-ATRAGQDDEVR-ILMANGAD--VNAMDDAGVTPLHLAAKRG-HLEIVEVLLKH 69
Query: 381 RANQDIINFHGQTAYSIA 398
A+ + + G+T +A
Sbjct: 70 GADVNASDIWGRTPLHLA 87
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 217 GKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPD 276
G +P+ +A + L +++++ K A + D TP+H AA+V HLE V L E D
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLL-KHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 277 SVLQRNEEGFYPFHLASANGRVRVMGEFFEKEN 309
V +++ G F ++ NG + E +K N
Sbjct: 106 -VNAQDKFGKTAFDISIDNGN-EDLAEILQKLN 136
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 248 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFE 306
D+ TP+H AA HLE V L + D V + G P HLA+ G + ++ E
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDIWGRTPLHLAATVGHLEIVEVLLE 101
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 75/187 (40%), Gaps = 13/187 (6%)
Query: 246 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFF 305
+ + ++P+H AA + + L + ++ RN + P HLA G +V+
Sbjct: 81 VTSQDGSSPLHVAALHGRADLIPLLLKHGANAG-ARNADQAVPLHLACQQGHFQVVKCLL 139
Query: 306 EKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAA 365
+ P +L G L A G + V +L+ IN ++ GNT LH A
Sbjct: 140 DSNAKPNKKDL---SGNTPLIYACSGGHHELVALLLQHG---ASINASNNKGNTALHEAV 193
Query: 366 LYGRHLAAAILVWDGRANQDIINFHGQTAYSIAKQKSA-----EINPEFFGNDDDADQLR 420
+ +L+ G + Q ++N +TA A+Q S ++ P + DD +
Sbjct: 194 IEKHVFVVELLLLHGASVQ-VLNKRQRTAVDCAEQNSKIMELLQVVPSCVASLDDVAETD 252
Query: 421 VDNYKTT 427
Y T
Sbjct: 253 RKEYVTV 259
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 23/117 (19%)
Query: 42 ITSPSENTLLHIAAAGSIHDHENMATTLARKYPFLITMQNSKRDTPLHVAARAGMLQTAK 101
+TS ++ LH+AA +H ++ L K+ +N+ + PLH+A + G Q K
Sbjct: 81 VTSQDGSSPLHVAA---LHGRADLIPLLL-KHGANAGARNADQAVPLHLACQQGHFQVVK 136
Query: 102 ILVDCAKR------SGMT------SSSQIDVKGLM-------EMKNVRGNTALHEAL 139
L+D + SG T S ++ L+ N +GNTALHEA+
Sbjct: 137 CLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAV 193
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 338 RRILKASNIDTLINEMDDDGNTPLHLAALYGR 369
+R+ K +N DG++PLH+AAL+GR
Sbjct: 67 KRLAKVPASGLGVNVTSQDGSSPLHVAALHGR 98
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 325 LHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQ 384
+HVAA+KG++D VRR+++ T+ N G T LHLA +G A L G +
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRF---GCTALHLACKFGCVDTAKYLASVGEVHS 80
Query: 385 DIINFHGQTAYSIA 398
+HGQ +A
Sbjct: 81 ---LWHGQKPIHLA 91
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 279 LQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVR 338
++ ++E H+A+ G+ + E P + N G LH+A K G DT +
Sbjct: 14 IKSDDENXEKIHVAARKGQTDEVRRLIETGVSP---TIQNRFGCTALHLACKFGCVDTAK 70
Query: 339 RILKASNIDTLINEMDDDGNTPLHLA 364
+ + +L + G P+HLA
Sbjct: 71 YLASVGEVHSLWH-----GQKPIHLA 91
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 103/249 (41%), Gaps = 42/249 (16%)
Query: 78 TMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLMEMKNVRGNTALHE 137
T+QN T LH+A + G + TAK L +S +V L G +H
Sbjct: 47 TIQNRFGCTALHLACKFGCVDTAKYL-----------ASVGEVHSLW-----HGQKPIHL 90
Query: 138 ALN--------ALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLA 189
A+ AL++ K++ + E +LL V+E S++K+ ++ L+
Sbjct: 91 AVXANKTDLVVALVEGAKERGQXPE---SLLNECDEREVNE--IGSHVKHCKGQTALHWC 145
Query: 190 VESKNE--DILKYILE--ALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPA--- 242
V E + +K +++ A P D A ++P+ A E + L + D P+
Sbjct: 146 VGLGPEYLEXIKILVQLGASPTAKDKAD----ETPLXRAXEFRNREALDLXXDTVPSKSS 201
Query: 243 -LLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVM 301
L ++Q N+ +HWA ++ + E D + NE P +L+ V +
Sbjct: 202 LRLDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTV-PLYLSVRAAXVLLT 260
Query: 302 GEFFEKENM 310
E +K ++
Sbjct: 261 KELLQKTDV 269
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 14/104 (13%)
Query: 315 ELLNTKGQNI----------LHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLA 364
ELL KG N+ LHVAA++ +D + + K +N +D G T LH A
Sbjct: 231 ELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG---AKMNALDSLGQTALHRA 287
Query: 365 ALYGRHLAAAILVWDGRANQDIINFHGQTAYSIAKQKSAEINPE 408
AL G HL L+ ++ II+ G TA + + +I E
Sbjct: 288 ALAG-HLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQILSE 330
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 11/123 (8%)
Query: 248 DEQMNTPMHWAASVDHLEGVRFLYEINPD-SVLQRNEEGFYPFHLASANGRVRVMGEFFE 306
DE+ TP+ WA++ +E VRFL E D +L + E LAS G ++G E
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERES--ALSLASTGGYTDIVGLLLE 90
Query: 307 KENMPPPTELLNTKGQNILHVAAKKGKSDTVRRIL-KASNIDTLINEMDDDGNTPLHLAA 365
++ + + G L A + V +L + +++ T D G TP+ LA
Sbjct: 91 RD---VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT----EADSGYTPMDLAV 143
Query: 366 LYG 368
G
Sbjct: 144 ALG 146
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 79 MQNSKRDTPLHVAARAGMLQTAKILVD 105
MQN+K +TPL +AAR G +TAK+L+D
Sbjct: 150 MQNNKEETPLFLAAREGSYETAKVLLD 176
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLA 364
G+ LH+AA+ +SD +R+L+AS D I D+ G TPLH A
Sbjct: 22 GETALHLAARYSRSDAAKRLLEAS-ADAXIQ--DNMGRTPLHAA 62
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 79 MQNSKRDTPLHVAARAGMLQTAKILVD 105
MQN+K +TPL +AAR G +TAK+L+D
Sbjct: 76 MQNNKEETPLFLAAREGSYETAKVLLD 102
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 248 DEQMNTPMHWAASVDHLEGVRFLYEINPD-SVLQRNEEGFYPFHLASANGRVRVMGEFFE 306
DE+ TP+ WA++ +E VRFL E D +L + E LAS G ++G E
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERES--ALSLASTGGYTDIVGLLLE 90
Query: 307 KE 308
++
Sbjct: 91 RD 92
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 36.2 bits (82), Expect = 0.056, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
G LH+AA + V +LK +N +D G TPLHL A+YG HL ++
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLLKNG---ADVNAIDAIGETPLHLVAMYG-HLEIVEVLLKH 102
Query: 381 RANQDIINFHGQTAYSIAKQKSAEINPEFFGNDDDADQLR 420
A+ + + G+TA+ I+ GN+D A+ L+
Sbjct: 103 GADVNAQDKFGKTAFDISIDN---------GNEDLAEILQ 133
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
G+ +L AA+ G+ D VR IL A+ D +N D G TPLHLAA+ HL ++
Sbjct: 15 GKKLLE-AARAGQDDEVR-ILMANGAD--VNAEDKVGLTPLHLAAM-NDHLEIVEVLLKN 69
Query: 381 RANQDIINFHGQT 393
A+ + I+ G+T
Sbjct: 70 GADVNAIDAIGET 82
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 36.2 bits (82), Expect = 0.057, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
G+ +L AA+ G+ D VR IL A+ D +N D G+TPLHLAA+ G +L+ +G
Sbjct: 15 GKKLLE-AARAGQDDEVR-ILTANGAD--VNANDYWGHTPLHLAAMLGHLEIVEVLLKNG 70
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 13/100 (13%)
Query: 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
G LH+AA G + V +LK +N + G TPLHLAA + HL ++
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNG---ADVNATGNTGRTPLHLAA-WADHLEIVEVLLKH 102
Query: 381 RANQDIINFHGQTAYSIAKQKSAEINPEFFGNDDDADQLR 420
A+ + + G+TA+ I+ GN+D A+ L+
Sbjct: 103 GADVNAQDKFGKTAFDISIDN---------GNEDLAEILQ 133
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 356 DGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIAKQK 401
DGNT LH AALY + +L+ GRA +N G+TA IA++K
Sbjct: 206 DGNTALHYAALYNQPDCLKLLL-KGRALVGTVNEAGETALDIARKK 250
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 79 MQNSKRDTPLHVAARAGMLQTAKILVD 105
MQN++ +TPL +AAR G +TAK+L+D
Sbjct: 153 MQNNREETPLFLAAREGSYETAKVLLD 179
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLA 364
G+ LH+AA+ +SD +R+L+AS N D+ G TPLH A
Sbjct: 25 GETALHLAARYSRSDAAKRLLEAS---ADANIQDNMGRTPLHAA 65
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 60/127 (47%), Gaps = 27/127 (21%)
Query: 79 MQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLMEMKNVRGNTALHEA 138
+++ + +TPLH+A G L + +L S + + +++ N G+T LH A
Sbjct: 73 LRDFRGNTPLHLACEQGCLASVGVLTQ--------SCTTPHLHSILKATNYNGHTCLHLA 124
Query: 139 -LNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDI 197
++ L V LLVSL + +++P + ++ L+LAV+ +N D+
Sbjct: 125 SIHGYLGI-----------VELLVSLGADVNAQEP-------CNGRTALHLAVDLQNPDL 166
Query: 198 LKYILEA 204
+ +L+
Sbjct: 167 VSLLLKC 173
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 356 DGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIAKQK 401
DGNT LH AALY + +L+ GRA +N G+TA IA++K
Sbjct: 225 DGNTALHYAALYNQPDCLKLLL-KGRALVGTVNEAGETALDIARKK 269
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 9/156 (5%)
Query: 247 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFE 306
QD TP+H A + D + + L ++ R +G P LA+ R+ + G +
Sbjct: 80 QDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAA---RLAIEGMVED 136
Query: 307 KENMPPPTELLNTKGQNILHVAAKKGKSDTVRRIL-KASNIDTLINEMDDDGNTPLHLAA 365
+ G+ LH AA ++ V +L +N D DD TPL LAA
Sbjct: 137 LITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDA----QDDKDETPLFLAA 192
Query: 366 LYGRHLAAAILVWDGRANQDIINFHGQTAYSIAKQK 401
G + A+ L+ D AN++I + + +A ++
Sbjct: 193 REGSYEASKALL-DNFANREITDHMDRLPRDVASER 227
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 60/126 (47%), Gaps = 27/126 (21%)
Query: 79 MQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLMEMKNVRGNTALHEA 138
+++ + +TPLH+A G L + +L S + + +++ N G+T LH A
Sbjct: 70 LRDFRGNTPLHLACEQGCLASVGVLTQ--------SCTTPHLHSILKATNYNGHTCLHLA 121
Query: 139 -LNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDI 197
++ L V LLVSL + +++P + ++ L+LAV+ +N D+
Sbjct: 122 SIHGYLGI-----------VELLVSLGADVNAQEP-------CNGRTALHLAVDLQNPDL 163
Query: 198 LKYILE 203
+ +L+
Sbjct: 164 VSLLLK 169
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 315 ELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAA 374
+L N GQ LH+AA G++ TV + L A+ L+ E G+T LHLA H A
Sbjct: 39 DLQNDLGQTALHLAAILGEASTVEK-LYAAGAGVLVAER--GGHTALHLACRVRAHTCAC 95
Query: 375 ILV 377
+L+
Sbjct: 96 VLL 98
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 89/212 (41%), Gaps = 33/212 (15%)
Query: 48 NTLLHIAAAGSIHDHEN-----MATTLARKYPFLITMQNSKRDTPLHVAARAGMLQTAKI 102
+T LH+A IH HE + + +Y + +QN T LH+AA G T +
Sbjct: 10 DTALHLAV---IHQHEPFLDFLLGFSAGHEY---LDLQNDLGQTALHLAAILGEASTVEK 63
Query: 103 LVDCAKRSGMTSSSQIDVKGLMEMKNVRGNTALHEALNALLDAKKDKNK---QKEERVTL 159
L A +G+ + + L VR +T L +D + + + T
Sbjct: 64 LY--AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121
Query: 160 LVSLARSLVSEDPNAS--------------YLKNVDCKSPLYLAVESKNEDILKYILEA- 204
S A + V PN +N D +PL++AV K+ ++++ + +A
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG 181
Query: 205 LPVNDDCATKLEGKSPVKVAIELQKLGLLKMM 236
+N T G++P+ +A+E Q +L+++
Sbjct: 182 ADLNKPEPTC--GRTPLHLAVEAQAASVLELL 211
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 19/102 (18%)
Query: 124 MEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCK 183
+E +N G+T LH A+ KD E V LL L +P +
Sbjct: 151 LEAENYDGHTPLHVAV-----IHKDA-----EMVRLLRDAGADLNKPEPTCG-------R 193
Query: 184 SPLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVKVAI 225
+PL+LAVE++ +L+ +L+A D A G++P+ A+
Sbjct: 194 TPLHLAVEAQAASVLELLLKA--GADPTARMYGGRTPLGSAL 233
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 315 ELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAA 374
+L N GQ LH+AA G++ TV + L A+ L+ E G+T LHLA H A
Sbjct: 39 DLQNDLGQTALHLAAILGEASTVEK-LYAAGAGVLVAER--GGHTALHLACRVRAHTCAC 95
Query: 375 ILV 377
+L+
Sbjct: 96 VLL 98
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 89/212 (41%), Gaps = 33/212 (15%)
Query: 48 NTLLHIAAAGSIHDHEN-----MATTLARKYPFLITMQNSKRDTPLHVAARAGMLQTAKI 102
+T LH+A IH HE + + +Y + +QN T LH+AA G T +
Sbjct: 10 DTALHLAV---IHQHEPFLDFLLGFSAGHEY---LDLQNDLGQTALHLAAILGEASTVEK 63
Query: 103 LVDCAKRSGMTSSSQIDVKGLMEMKNVRGNTALHEALNALLDAKKDKNK---QKEERVTL 159
L A +G+ + + L VR +T L +D + + + T
Sbjct: 64 LY--AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121
Query: 160 LVSLARSLVSEDPNAS--------------YLKNVDCKSPLYLAVESKNEDILKYILEA- 204
S A + V PN +N D +PL++AV K+ ++++ + +A
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG 181
Query: 205 LPVNDDCATKLEGKSPVKVAIELQKLGLLKMM 236
+N T G++P+ +A+E Q +L+++
Sbjct: 182 ADLNKPEPTC--GRTPLHLAVEAQAASVLELL 211
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 19/102 (18%)
Query: 124 MEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCK 183
+E +N G+T LH A+ KD E V LL L +P +
Sbjct: 151 LEAENYDGHTPLHVAV-----IHKDA-----EMVRLLRDAGADLNKPEPTCG-------R 193
Query: 184 SPLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVKVAI 225
+PL+LAVE++ +L+ +L+A D A G++P+ A+
Sbjct: 194 TPLHLAVEAQAASVLELLLKA--GADPTARMYGGRTPLGSAL 233
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 320 KGQNILHVAAKKGKSDTVRRIL--KASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILV 377
KG+ LH AA+ V+ ++ K SN D + D+DG TP+ LAA GR L+
Sbjct: 278 KGRTALHYAAQVSNXPIVKYLVGEKGSNKD----KQDEDGKTPIXLAAQEGRIEVVXYLI 333
Query: 378 WDGRANQDIINFHGQTAYSIAK 399
G A+ + ++ TA +A+
Sbjct: 334 QQG-ASVEAVDATDHTARQLAQ 354
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 253 TPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVM 301
T +H+AA V + V++L + +++E+G P LA+ GR+ V+
Sbjct: 281 TALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVV 329
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380
G L++A G + V +LK +N +D G TPLHLAA G HL A ++
Sbjct: 47 GLTPLYLATAHGHLEIVEVLLKNG---ADVNAVDAIGFTPLHLAAFIG-HLEIAEVLLKH 102
Query: 381 RANQDIINFHGQTAYSIA 398
A+ + + G+TA+ I+
Sbjct: 103 GADVNAQDKFGKTAFDIS 120
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 247 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRV 300
+DE TP++ A + HLE V L + N V + GF P HLA+ G + +
Sbjct: 43 KDEYGLTPLYLATAHGHLEIVEVLLK-NGADVNAVDAIGFTPLHLAAFIGHLEI 95
>pdb|2G1H|A Chain A, Structure Of E.Coli Fabd Complexed With Glycerol
pdb|2G2O|A Chain A, Structure Of E.Coli Fabd Complexed With Sulfate
pdb|2G2Y|A Chain A, Structure Of E.Coli Fabd Complexed With Malonate
pdb|2G2Z|A Chain A, Structure Of E.coli Fabd Complexed With Malonyl-coa
Length = 308
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 250 QMNTPMHWAASVDHL--EGVRFLYEINPDSVL 279
Q+ P+ W SV+++ +GV LYE+ P VL
Sbjct: 249 QLYNPVQWTKSVEYMAAQGVEHLYEVGPGKVL 280
>pdb|1MLA|A Chain A, The Escherichia Coli Malonyl-Coa:acyl Carrier Protein
Transacylase At 1.5-Angstroms Resolution. Crystal
Structure Of A Fatty Acid Synthase Component
Length = 309
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 250 QMNTPMHWAASVDHL--EGVRFLYEINPDSVL 279
Q+ P+ W SV+++ +GV LYE+ P VL
Sbjct: 250 QLYNPVQWTKSVEYMAAQGVEHLYEVGPGKVL 281
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Query: 239 KQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRV 298
KQ A +QD +P+H AA L+ ++ L E D V + G P HLA G
Sbjct: 62 KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHT 120
Query: 299 RVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTV 337
V+ + ++ + +G L +A ++G D V
Sbjct: 121 AVVSFLAAESDL----HRRDARGLTPLELALQRGAQDLV 155
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 79 MQNSKRDTPLHVAARAGMLQTAKILVD 105
+Q++ +P+H AAR G L T K+LV+
Sbjct: 69 VQDTSGTSPVHDAARTGFLDTLKVLVE 95
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Query: 239 KQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRV 298
KQ A +QD +P+H AA L+ ++ L E D V + G P HLA G
Sbjct: 56 KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHT 114
Query: 299 RVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTV 337
V+ + ++ + +G L +A ++G D V
Sbjct: 115 AVVSFLAAESDL----HRRDARGLTPLELALQRGAQDLV 149
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 79 MQNSKRDTPLHVAARAGMLQTAKILVD 105
+Q++ +P+H AAR G L T K+LV+
Sbjct: 63 VQDTSGTSPVHDAARTGFLDTLKVLVE 89
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 316 LLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAI 375
L N +G LH A G ++ V+ +++ +N D DG TPLH AA
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQ---FGVNVNAADSDGWTPLHCAASCNNVQVCKF 121
Query: 376 LVWDGRA 382
LV G A
Sbjct: 122 LVESGAA 128
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 316 LLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAI 375
L N +G LH A G ++ V+ +++ +N D DG TPLH AA
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQ---FGVNVNAADSDGWTPLHCAASCNNVQVCKF 121
Query: 376 LVWDGRA 382
LV G A
Sbjct: 122 LVESGAA 128
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 208 NDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPA----LLLIQDEQMNTPMHWAASVDH 263
ND EG S + + LL+ ++D P L + DE NTP+HW S+ +
Sbjct: 84 NDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIAN 143
Query: 264 LEGVRFL 270
LE V+ L
Sbjct: 144 LELVKHL 150
>pdb|3H0P|A Chain A, 2.0 Angstrom Crystal Structure Of An Acyl Carrier Protein
S- Malonyltransferase From Salmonella Typhimurium.
pdb|3H0P|B Chain B, 2.0 Angstrom Crystal Structure Of An Acyl Carrier Protein
S- Malonyltransferase From Salmonella Typhimurium
Length = 312
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 250 QMNTPMHWAASVDHL--EGVRFLYEINPDSVL 279
Q+ P+ W SV+ + +GV LYE+ P VL
Sbjct: 253 QLYNPVQWTKSVEFIAAQGVEHLYEVGPGKVL 284
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 124 MEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCK 183
+ ++ RGNT LH AL A+ D ++ K + LL+ L D N L N D
Sbjct: 169 LRRQDSRGNTVLH-ALVAIADNTRENTKFVTKMYDLLLIKCAKLFP-DTNLEALLNNDGL 226
Query: 184 SPLYLAVESKNEDILKYIL 202
SPL +A ++ I ++I+
Sbjct: 227 SPLMMAAKTGKIGIFQHII 245
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 5/48 (10%)
Query: 183 KSPLYLAVESKNEDILKYILEA--LPVNDDCATKLEGKSPVKVAIELQ 228
K+PL LAVE K+ +++ +LE + +ND T +GK+ + +A+EL+
Sbjct: 220 KTPLILAVEKKHLGLVQRLLEQEHIEIND---TDSDGKTALLLAVELK 264
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 5/48 (10%)
Query: 183 KSPLYLAVESKNEDILKYILEA--LPVNDDCATKLEGKSPVKVAIELQ 228
K+PL LAVE K+ +++ +LE + +ND T +GK+ + +A+EL+
Sbjct: 240 KTPLILAVEKKHLGLVQRLLEQEHIEIND---TDSDGKTALLLAVELK 284
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 239 KQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRV 298
KQ A +QD +P+H AA L+ ++ L E D V + G P HLA G
Sbjct: 64 KQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGAD-VNALDSTGSLPIHLAIREGHS 122
Query: 299 RVMGEFFEKENMP-------PPTELLNTKG-QNILHV 327
V+ + ++ P EL +G QN++ +
Sbjct: 123 SVVSFLAPESDLHHRDASGLTPLELARQRGAQNLMDI 159
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 79 MQNSKRDTPLHVAARAGMLQTAKILVD 105
+Q++ +P+H AAR G L T K+LV+
Sbjct: 71 VQDASGTSPVHDAARTGFLDTLKVLVE 97
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 239 KQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRV 298
KQ A +QD +P+H AA L+ ++ L E D V + G P HLA G
Sbjct: 62 KQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGAD-VNALDSTGSLPIHLAIREGHS 120
Query: 299 RVMGEFFEKENMP-------PPTELLNTKG-QNILHV 327
V+ + ++ P EL +G QN++ +
Sbjct: 121 SVVSFLAPESDLHHRDASGLTPLELARQRGAQNLMDI 157
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 79 MQNSKRDTPLHVAARAGMLQTAKILVD 105
+Q++ +P+H AAR G L T K+LV+
Sbjct: 69 VQDASGTSPVHDAARTGFLDTLKVLVE 95
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 184 SPLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPAL 243
SPL+LA + + + +L A V+ D TK++ ++P+ +A +++++ K A
Sbjct: 36 SPLHLAAQYGHFSTTEVLLRA-GVSRDARTKVD-RTPLHMAASEGHANIVEVLL-KHGAD 92
Query: 244 LLIQDEQMNTPMHWAASVDHLEGVRFLYEINPD 276
+ +D T +HWA +H E V L + D
Sbjct: 93 VNAKDMLKMTALHWATEHNHQEVVELLIKYGAD 125
>pdb|3BBO|Q Chain Q, Homology Model For The Spinach Chloroplast 50s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 161
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 85 DTPLHVAARAGMLQ---------TAKILVDCAKRSGMTSSSQIDVKGLMEMKNVRGNTAL 135
D+ +H A A +Q ++ ++ AK+ G +S KG+ ++ RG
Sbjct: 84 DSKMHTLASASTMQKSISEELDYSSSPTIEVAKKVGEVIASACLEKGITKVAFDRGGYPY 143
Query: 136 HEALNALLDAKKDKNKQ 152
H + AL DA ++K Q
Sbjct: 144 HGRVKALADAAREKGLQ 160
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 13/100 (13%)
Query: 188 LAVESKNEDILKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPAL--LL 245
LAV+ + +LE + ND T + G P ++A L+ L L + P L +
Sbjct: 2056 LAVQWGAIGDVGVVLETMGTND---TVIGGTLPQRIASCLEVLDLF--LSQPHPVLSSFV 2110
Query: 246 IQDEQMNTPMHWAA------SVDHLEGVRFLYEINPDSVL 279
+ +++ P ++ +V H+ G+R + INPDS L
Sbjct: 2111 LAEKKAAAPRDGSSQKDLVKAVAHILGIRDVASINPDSTL 2150
>pdb|2IOP|A Chain A, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|B Chain B, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|C Chain C, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|D Chain D, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOQ|A Chain A, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90
pdb|2IOQ|B Chain B, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90
Length = 624
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 241 PALLLIQDEQMNTPMH--WAASVDHLEGVRFLYEINPDSVL 279
PA++ ++M+T M +AA+ + V++++E+NPD VL
Sbjct: 536 PAIVSTDADEMSTQMAKLFAAAGQKVPEVKYIFELNPDHVL 576
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,768,564
Number of Sequences: 62578
Number of extensions: 700413
Number of successful extensions: 2424
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 1795
Number of HSP's gapped (non-prelim): 460
length of query: 673
length of database: 14,973,337
effective HSP length: 105
effective length of query: 568
effective length of database: 8,402,647
effective search space: 4772703496
effective search space used: 4772703496
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)