Query 005862
Match_columns 673
No_of_seqs 537 out of 3318
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 09:28:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005862.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005862hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 2.3E-51 8E-56 446.1 35.1 354 3-414 13-367 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 1.7E-50 5.9E-55 439.3 36.0 350 3-410 46-396 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 3.3E-42 1.1E-46 360.6 33.9 296 43-387 21-330 (337)
4 3utm_A Tankyrase-1; tankyrase, 100.0 1.8E-40 6.3E-45 348.7 27.7 299 43-400 20-322 (351)
5 1wdy_A 2-5A-dependent ribonucl 100.0 4.4E-39 1.5E-43 327.6 31.9 273 46-389 4-284 (285)
6 1wdy_A 2-5A-dependent ribonucl 100.0 6.4E-39 2.2E-43 326.4 30.6 244 162-414 19-276 (285)
7 3utm_A Tankyrase-1; tankyrase, 100.0 5.8E-39 2E-43 337.2 29.3 324 3-402 23-350 (351)
8 4g8k_A 2-5A-dependent ribonucl 100.0 6.2E-39 2.1E-43 335.8 27.9 286 81-413 22-323 (337)
9 3d9h_A CDNA FLJ77766, highly s 100.0 5E-38 1.7E-42 320.7 23.8 259 44-385 12-281 (285)
10 2fo1_E LIN-12 protein; beta-ba 100.0 2.9E-38 1E-42 335.2 18.4 289 48-380 67-369 (373)
11 2fo1_E LIN-12 protein; beta-ba 100.0 2.5E-38 8.6E-43 335.7 17.0 313 47-414 37-369 (373)
12 2xai_A ASB-9, ankyrin repeat a 100.0 9.4E-37 3.2E-41 307.1 22.1 252 83-377 2-258 (261)
13 2xai_A ASB-9, ankyrin repeat a 100.0 7.6E-37 2.6E-41 307.8 21.0 252 46-342 2-259 (261)
14 3ljn_A Hypothetical protein; a 100.0 3.2E-37 1.1E-41 326.4 15.8 272 43-380 16-312 (364)
15 1oy3_D Transcription factor in 100.0 5E-36 1.7E-40 305.0 22.1 269 77-405 2-272 (282)
16 3d9h_A CDNA FLJ77766, highly s 100.0 3.2E-36 1.1E-40 307.3 20.5 252 128-411 12-273 (285)
17 1yyh_A HN1;, notch 1, ankyrin 100.0 7.2E-36 2.5E-40 299.2 22.5 240 124-379 3-245 (253)
18 3ljn_A Hypothetical protein; a 100.0 1.7E-36 5.8E-41 320.8 18.8 249 41-344 47-312 (364)
19 1yyh_A HN1;, notch 1, ankyrin 100.0 7.8E-36 2.7E-40 298.9 21.8 230 42-306 5-244 (253)
20 3b7b_A Euchromatic histone-lys 100.0 3E-34 1E-38 284.1 25.1 221 42-302 6-227 (237)
21 1k1a_A B-cell lymphoma 3-encod 100.0 5.5E-35 1.9E-39 290.1 19.6 225 42-306 4-237 (241)
22 3aji_A 26S proteasome non-ATPa 100.0 2.9E-34 1E-38 283.0 23.6 224 44-307 3-227 (231)
23 3b7b_A Euchromatic histone-lys 100.0 5.1E-34 1.7E-38 282.5 25.1 226 124-376 4-229 (237)
24 1oy3_D Transcription factor in 100.0 9.7E-35 3.3E-39 295.4 20.4 232 178-416 5-250 (282)
25 1k1a_A B-cell lymphoma 3-encod 100.0 1.5E-34 5.3E-39 286.8 21.2 229 177-413 4-238 (241)
26 3aji_A 26S proteasome non-ATPa 100.0 1.8E-33 6.3E-38 277.3 23.5 220 182-411 6-225 (231)
27 2dzn_A Probable 26S proteasome 100.0 1.9E-33 6.6E-38 276.5 22.5 212 47-295 2-218 (228)
28 2dzn_A Probable 26S proteasome 100.0 3.1E-33 1.1E-37 275.0 23.3 212 131-365 2-216 (228)
29 4b93_B Ankyrin repeat domain-c 100.0 4E-34 1.4E-38 288.6 14.6 218 177-403 6-230 (269)
30 1s70_B 130 kDa myosin-binding 100.0 1.1E-33 3.8E-38 290.5 17.1 235 83-365 39-273 (299)
31 4b93_B Ankyrin repeat domain-c 100.0 6.3E-34 2.1E-38 287.2 13.7 215 43-297 7-230 (269)
32 3eu9_A Huntingtin-interacting 100.0 3.2E-32 1.1E-36 269.6 25.4 232 125-384 3-236 (240)
33 1s70_B 130 kDa myosin-binding 100.0 7E-34 2.4E-38 292.0 13.2 272 90-401 4-275 (299)
34 3eu9_A Huntingtin-interacting 100.0 4.8E-32 1.6E-36 268.3 24.2 224 43-306 5-231 (240)
35 2f8y_A Notch homolog 1, transl 100.0 3.7E-32 1.3E-36 266.4 22.2 212 162-383 5-216 (223)
36 1sw6_A Regulatory protein SWI6 100.0 5.5E-34 1.9E-38 296.6 8.1 286 63-402 32-327 (327)
37 2f8y_A Notch homolog 1, transl 100.0 4.2E-32 1.4E-36 266.0 20.5 211 63-308 4-214 (223)
38 3kea_A K1L; tropism, ANK repea 100.0 3.1E-32 1.1E-36 277.6 20.2 236 63-387 13-250 (285)
39 3kea_A K1L; tropism, ANK repea 100.0 8.3E-32 2.9E-36 274.5 19.4 229 162-415 14-245 (285)
40 1sw6_A Regulatory protein SWI6 100.0 3.4E-33 1.2E-37 290.6 5.2 261 82-414 21-306 (327)
41 1ikn_D Protein (I-kappa-B-alph 100.0 1E-31 3.4E-36 266.0 9.5 216 177-400 3-228 (236)
42 1ikn_D Protein (I-kappa-B-alph 100.0 1.6E-31 5.4E-36 264.5 9.3 212 42-291 3-225 (236)
43 2rfa_A Transient receptor pote 100.0 1.7E-29 5.8E-34 249.1 22.2 207 83-344 2-220 (232)
44 3hra_A Ankyrin repeat family p 100.0 3.6E-29 1.2E-33 240.9 23.7 194 180-380 3-201 (201)
45 2rfa_A Transient receptor pote 100.0 2E-29 7E-34 248.5 22.3 191 181-380 2-220 (232)
46 3hra_A Ankyrin repeat family p 100.0 1.4E-29 4.7E-34 243.8 19.8 192 215-412 3-199 (201)
47 2pnn_A Transient receptor pote 100.0 1.6E-29 5.4E-34 256.0 15.4 212 177-395 8-271 (273)
48 4gpm_A Engineered protein OR26 100.0 2.2E-28 7.5E-33 227.9 19.5 159 219-386 6-164 (169)
49 2pnn_A Transient receptor pote 100.0 6.7E-29 2.3E-33 251.4 17.3 217 41-309 7-257 (273)
50 2etb_A Transient receptor pote 100.0 1.6E-28 5.4E-33 246.1 19.0 192 181-380 1-244 (256)
51 2etb_A Transient receptor pote 100.0 1.3E-28 4.3E-33 246.8 17.8 218 46-308 1-244 (256)
52 3jxi_A Vanilloid receptor-rela 100.0 6.4E-28 2.2E-32 242.2 16.4 198 179-380 2-248 (260)
53 4gpm_A Engineered protein OR26 100.0 1.5E-27 5.2E-32 222.2 16.3 154 253-414 6-159 (169)
54 3jxi_A Vanilloid receptor-rela 99.9 1.4E-27 4.7E-32 239.8 17.2 221 44-308 2-248 (260)
55 3v30_A DNA-binding protein rfx 99.9 3.8E-27 1.3E-31 220.8 17.6 170 217-394 2-171 (172)
56 2aja_A Ankyrin repeat family p 99.9 1.6E-29 5.4E-34 265.8 -0.1 284 47-409 65-367 (376)
57 4hbd_A KN motif and ankyrin re 99.9 2E-27 6.9E-32 240.8 13.7 191 183-380 77-273 (276)
58 4hbd_A KN motif and ankyrin re 99.9 1.3E-27 4.6E-32 242.1 11.2 190 217-412 76-271 (276)
59 2rfm_A Putative ankyrin repeat 99.9 5.1E-26 1.8E-30 217.2 17.7 160 213-380 31-190 (192)
60 3v30_A DNA-binding protein rfx 99.9 1E-25 3.5E-30 211.0 17.5 169 47-254 2-171 (172)
61 2rfm_A Putative ankyrin repeat 99.9 6.9E-26 2.4E-30 216.3 16.5 162 39-239 27-189 (192)
62 3v31_A Ankyrin repeat family A 99.9 2.6E-25 8.7E-30 207.2 18.3 157 216-380 2-158 (167)
63 2y1l_E Darpin-8.4; hydrolase-i 99.9 3.1E-25 1.1E-29 207.1 18.5 158 215-380 12-169 (169)
64 1ihb_A P18-INK4C(INK6), cyclin 99.9 2E-25 6.9E-30 206.7 16.3 155 217-380 5-160 (162)
65 3f6q_A Integrin-linked protein 99.9 1.8E-25 6.1E-30 210.9 16.2 169 215-391 3-171 (179)
66 2aja_A Ankyrin repeat family p 99.9 5.6E-28 1.9E-32 254.0 -2.4 265 43-379 88-371 (376)
67 3v31_A Ankyrin repeat family A 99.9 2.9E-25 9.8E-30 206.9 16.3 155 250-412 2-156 (167)
68 2y1l_E Darpin-8.4; hydrolase-i 99.9 2.9E-25 9.9E-30 207.4 15.0 158 247-412 10-167 (169)
69 1awc_B Protein (GA binding pro 99.9 5.4E-25 1.9E-29 201.9 14.7 147 253-408 4-150 (153)
70 1ihb_A P18-INK4C(INK6), cyclin 99.9 8.1E-25 2.8E-29 202.6 16.0 157 45-240 3-160 (162)
71 3twr_A Tankyrase-2; ankyrin re 99.9 3.7E-25 1.3E-29 205.7 13.2 158 215-380 6-163 (165)
72 1awc_B Protein (GA binding pro 99.9 1.6E-24 5.6E-29 198.7 17.2 150 218-376 3-152 (153)
73 1bd8_A P19INK4D CDK4/6 inhibit 99.9 1.8E-24 6.3E-29 198.9 16.8 153 217-378 2-154 (156)
74 2vge_A RELA-associated inhibit 99.9 5.3E-27 1.8E-31 230.6 -0.7 198 199-408 2-205 (229)
75 3twr_A Tankyrase-2; ankyrin re 99.9 2.9E-25 9.8E-30 206.5 10.2 159 247-413 4-162 (165)
76 3f6q_A Integrin-linked protein 99.9 2.2E-24 7.4E-29 203.5 15.9 166 44-248 2-168 (179)
77 1bd8_A P19INK4D CDK4/6 inhibit 99.9 4.4E-24 1.5E-28 196.4 15.8 153 47-239 2-155 (156)
78 2vge_A RELA-associated inhibit 99.9 4.8E-27 1.6E-31 230.9 -5.2 186 81-303 18-206 (229)
79 1ycs_B 53BP2, P53BP2; ankyrin 99.9 7.6E-25 2.6E-29 216.9 6.4 179 215-403 3-193 (239)
80 1ycs_B 53BP2, P53BP2; ankyrin 99.9 3E-24 1E-28 212.6 7.1 180 179-369 2-193 (239)
81 1bi7_B P16INK4A, MTS1, multipl 99.9 2.7E-23 9.3E-28 191.2 11.1 146 244-398 5-151 (156)
82 1d9s_A Cyclin-dependent kinase 99.9 1.1E-22 3.8E-27 182.4 12.7 131 242-380 3-134 (136)
83 3t8k_A Uncharacterized protein 99.9 6.7E-23 2.3E-27 194.1 8.0 152 218-379 7-176 (186)
84 1d9s_A Cyclin-dependent kinase 99.9 3.8E-22 1.3E-26 178.9 10.9 128 41-206 6-135 (136)
85 1bi7_B P16INK4A, MTS1, multipl 99.9 9.4E-22 3.2E-26 180.9 10.6 143 213-364 8-151 (156)
86 2jab_A H10-2-G3; HER2, darpin, 99.9 2.2E-21 7.5E-26 173.9 12.6 125 43-204 10-135 (136)
87 1n0r_A 4ANK, 4 ankyrin repeats 99.9 7.3E-21 2.5E-25 167.5 15.6 124 250-380 1-124 (126)
88 1n0r_A 4ANK, 4 ankyrin repeats 99.9 6.8E-21 2.3E-25 167.7 15.3 124 46-206 1-125 (126)
89 2jab_A H10-2-G3; HER2, darpin, 99.9 3.5E-21 1.2E-25 172.6 13.3 127 247-380 10-136 (136)
90 3t8k_A Uncharacterized protein 99.9 8.2E-22 2.8E-26 186.5 9.1 162 182-354 6-184 (186)
91 3c5r_A BARD-1, BRCA1-associate 99.8 4.2E-21 1.4E-25 172.2 9.0 126 280-412 5-130 (137)
92 3c5r_A BARD-1, BRCA1-associate 99.8 8.2E-21 2.8E-25 170.4 8.0 126 42-204 5-131 (137)
93 3deo_A Signal recognition part 99.8 1.6E-20 5.4E-25 177.6 9.7 140 43-239 40-181 (183)
94 3aaa_C Myotrophin, protein V-1 99.8 3.8E-20 1.3E-24 162.6 10.4 113 282-401 4-116 (123)
95 3ui2_A Signal recognition part 99.8 4.8E-20 1.6E-24 182.8 12.0 140 44-240 42-183 (244)
96 2b0o_E UPLC1; arfgap, structur 99.8 2E-19 6.8E-24 183.9 16.2 141 250-404 150-299 (301)
97 3aaa_C Myotrophin, protein V-1 99.8 3.6E-20 1.2E-24 162.8 9.0 116 44-196 4-120 (123)
98 3ehr_A Osteoclast-stimulating 99.8 2E-20 7E-25 182.7 8.2 138 247-391 69-206 (222)
99 3deo_A Signal recognition part 99.8 2.2E-20 7.6E-25 176.6 8.0 109 250-366 43-152 (183)
100 2b0o_E UPLC1; arfgap, structur 99.8 4E-19 1.4E-23 181.6 16.6 140 217-370 151-299 (301)
101 3ui2_A Signal recognition part 99.8 2.5E-19 8.7E-24 177.6 11.3 140 215-380 43-183 (244)
102 1dcq_A PYK2-associated protein 99.8 1.5E-18 5E-23 175.4 15.8 193 177-380 61-261 (278)
103 3ehr_A Osteoclast-stimulating 99.8 2.2E-19 7.6E-24 175.3 8.3 130 280-416 68-198 (222)
104 1dcq_A PYK2-associated protein 99.8 9.9E-18 3.4E-22 169.3 16.8 124 183-308 131-261 (278)
105 3jue_A Arfgap with coiled-coil 99.7 4.4E-18 1.5E-22 177.9 13.0 149 247-402 195-348 (368)
106 1n0q_A 3ANK, 3 ankyrin repeats 99.7 5.3E-18 1.8E-22 140.8 10.9 92 46-173 1-93 (93)
107 1n0q_A 3ANK, 3 ankyrin repeats 99.7 1.9E-17 6.5E-22 137.4 11.8 91 284-380 1-91 (93)
108 3lvq_E ARF-GAP with SH3 domain 99.7 1.7E-17 5.8E-22 182.1 14.7 136 251-400 132-276 (497)
109 2l6b_A NR1C; ankyrin, consensu 99.7 6.6E-18 2.3E-22 146.3 9.1 109 280-395 4-112 (115)
110 3jue_A Arfgap with coiled-coil 99.7 2.9E-17 9.8E-22 171.8 13.9 149 215-368 197-348 (368)
111 3lvq_E ARF-GAP with SH3 domain 99.7 1.2E-16 4E-21 175.4 16.1 137 217-367 132-277 (497)
112 2l6b_A NR1C; ankyrin, consensu 99.7 5.9E-17 2E-21 140.2 9.2 109 246-361 4-112 (115)
113 2zgd_A 3 repeat synthetic anky 99.6 2.2E-15 7.4E-20 129.2 9.3 91 41-167 18-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.6 1.4E-15 4.7E-20 130.4 7.2 92 279-376 18-109 (110)
115 1y29_A Huwentoxin-X; A double- 81.4 0.66 2.3E-05 26.5 1.4 16 654-669 11-26 (28)
116 3gvo_A Pumilio 2, pumilio homo 74.8 8.1 0.00028 39.1 8.5 160 177-340 104-272 (351)
117 3gvo_A Pumilio 2, pumilio homo 67.9 9.5 0.00032 38.6 7.1 225 43-299 33-267 (351)
118 3k49_A MRNA-binding protein PU 59.8 36 0.0012 34.4 9.8 60 43-106 38-100 (369)
119 3k49_A MRNA-binding protein PU 44.8 42 0.0014 33.9 7.3 91 248-342 183-285 (369)
120 4b2v_A S64; toxin, ICK; NMR {S 23.8 20 0.00069 20.6 0.3 10 659-668 18-27 (32)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.3e-51 Score=446.11 Aligned_cols=354 Identities=22% Similarity=0.302 Sum_probs=297.3
Q ss_pred cHHHHHHHHhhhhhhhhcCcchhhHhhcccccchhccccccCCCCCcHHHHHHh-CCccCHHHHHHHHHHhCCccccccC
Q 005862 3 DANEALRLASLRSALINYNVSPFLLSEIENQDMSETFKTITSPSENTLLHIAAA-GSIHDHENMATTLARKYPFLITMQN 81 (673)
Q Consensus 3 ~~~~~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~~~ll~~~~ 81 (673)
.+.|+||.|+..|.+ ++.++|++...+.+ ..+..|.||||+||. |+ .+++++|++++++ ++.+|
T Consensus 13 ~g~t~L~~Aa~~g~~---~~v~~Ll~~g~~~~-------~~~~~~~t~L~~A~~~g~----~~~v~~Ll~~g~~-~~~~~ 77 (437)
T 1n11_A 13 SGLTPLHVASFMGHL---PIVKNLLQRGASPN-------VSNVKVETPLHMAARAGH----TEVAKYLLQNKAK-VNAKA 77 (437)
T ss_dssp --CCHHHHHHHHTCH---HHHHHHHHTTCCSC-------CSSSCCCCHHHHHHHHTC----HHHHHHHHHHTCC-SSCCC
T ss_pred CCCCHHHHHHHCCCH---HHHHHHHHcCCCCC-------CCCCCCCCHHHHHHHcCC----HHHHHHHHhCCCC-CCCCC
Confidence 567899999999999 88999988644433 367789999999999 99 9999999999988 89999
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccchhhhhhhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHH
Q 005862 82 SKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLMEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLV 161 (673)
Q Consensus 82 ~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~ 161 (673)
..|.||||+|+..|+.++|++|+++|++ ++.+|..|.||||+|+. .|+.
T Consensus 78 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~--------------~~~~~~~g~t~L~~A~~-------~g~~---------- 126 (437)
T 1n11_A 78 KDDQTPLHCAARIGHTNMVKLLLENNAN--------------PNLATTAGHTPLHIAAR-------EGHV---------- 126 (437)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHHTCC--------------TTCCCTTCCCHHHHHHH-------HTCH----------
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHhCCCC--------------CCCCCCCCCcHHHHHHH-------cCCH----------
Confidence 9999999999999999999999999987 56678888899999988 8888
Q ss_pred HHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCC
Q 005862 162 SLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQP 241 (673)
Q Consensus 162 ~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 241 (673)
++++.|++++.+.. ..+..|.||||+|+..|+.+++++|++++... ...+..|.||||.|+..++.+++++|++++
T Consensus 127 ~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g- 202 (437)
T 1n11_A 127 ETVLALLEKEASQA-CMTKKGFTPLHVAAKYGKVRVAELLLERDAHP--NAAGKNGLTPLHVAVHHNNLDIVKLLLPRG- 202 (437)
T ss_dssp HHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCSSCCCHHHHHHHTTCHHHHHHHGGGT-
T ss_pred HHHHHHHhCCCCCc-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHhCC-
Confidence 88888888887766 56777888888888888888888888875443 245667888888888888888888888887
Q ss_pred cccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCC
Q 005862 242 ALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKG 321 (673)
Q Consensus 242 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g 321 (673)
..++..+..|.||||+|+..|+.+++++|++.+.+ .+..+..|.||||.|+..|+.+++++|++++. ..+..+..|
T Consensus 203 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~---~~~~~~~~g 278 (437)
T 1n11_A 203 GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQA---NGNLGNKSG 278 (437)
T ss_dssp CCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC---CTTCCCTTC
T ss_pred CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCC---CCCCCCCCC
Confidence 56777778888888888888888888888888877 67778888888888888888888888888552 236677888
Q ss_pred CcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCccccccCCCCHHHHHHhh
Q 005862 322 QNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIAKQK 401 (673)
Q Consensus 322 ~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~G~T~l~~a~~~ 401 (673)
+||||+|+..|+.+++++|++.+ .++|.+|..|+||||+|+..|+.+++++|++++ ++++.+|..|+||||+|+..
T Consensus 279 ~t~L~~A~~~~~~~~~~~Ll~~g---~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~n~~~~~g~t~L~~A~~~ 354 (437)
T 1n11_A 279 LTPLHLVAQEGHVPVADVLIKHG---VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ-ADVNAKTKLGYSPLHQAAQQ 354 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHT---CCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHT
T ss_pred CCHHHHHHHcCCHHHHHHHHhCC---ccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcC-CCCCCCCCCCCCHHHHHHHC
Confidence 88888888888888888888887 778888888888888888888888888888876 88888888888888888888
Q ss_pred ccccCccccCCcc
Q 005862 402 SAEINPEFFGNDD 414 (673)
Q Consensus 402 ~~~~~~~~l~~~~ 414 (673)
++.+++++|.+..
T Consensus 355 g~~~iv~~Ll~~g 367 (437)
T 1n11_A 355 GHTDIVTLLLKNG 367 (437)
T ss_dssp TCHHHHHHHHHTT
T ss_pred ChHHHHHHHHHCc
Confidence 8888888876543
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.7e-50 Score=439.28 Aligned_cols=350 Identities=25% Similarity=0.323 Sum_probs=321.4
Q ss_pred cHHHHHHHHhhhhhhhhcCcchhhHhhcccccchhccccccCCCCCcHHHHHHh-CCccCHHHHHHHHHHhCCccccccC
Q 005862 3 DANEALRLASLRSALINYNVSPFLLSEIENQDMSETFKTITSPSENTLLHIAAA-GSIHDHENMATTLARKYPFLITMQN 81 (673)
Q Consensus 3 ~~~~~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~~~ll~~~~ 81 (673)
.+.++||.|+..+.. ++.++|++.....+ .++..|+||||+|+. |+ .+++++|++++++ ++..+
T Consensus 46 ~~~t~L~~A~~~g~~---~~v~~Ll~~g~~~~-------~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~ga~-~~~~~ 110 (437)
T 1n11_A 46 KVETPLHMAARAGHT---EVAKYLLQNKAKVN-------AKAKDDQTPLHCAARIGH----TNMVKLLLENNAN-PNLAT 110 (437)
T ss_dssp CCCCHHHHHHHHTCH---HHHHHHHHHTCCSS-------CCCTTSCCHHHHHHHHTC----HHHHHHHHHHTCC-TTCCC
T ss_pred CCCCHHHHHHHcCCH---HHHHHHHhCCCCCC-------CCCCCCCCHHHHHHHCCC----HHHHHHHHhCCCC-CCCCC
Confidence 456899999999988 88999988644332 467889999999999 99 9999999999988 78899
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccchhhhhhhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHH
Q 005862 82 SKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLMEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLV 161 (673)
Q Consensus 82 ~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~ 161 (673)
..|.||||+|+..|+.++|++|++++++ .+..+..|.||||+|+. .|+.
T Consensus 111 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~--------------~~~~~~~g~t~L~~A~~-------~g~~---------- 159 (437)
T 1n11_A 111 TAGHTPLHIAAREGHVETVLALLEKEAS--------------QACMTKKGFTPLHVAAK-------YGKV---------- 159 (437)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHTTCC--------------SCCCCTTSCCHHHHHHH-------TTCH----------
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHhCCCC--------------CcCCCCCCCCHHHHHHH-------cCCH----------
Confidence 9999999999999999999999999876 45577899999999999 9999
Q ss_pred HHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCC
Q 005862 162 SLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQP 241 (673)
Q Consensus 162 ~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 241 (673)
+++++|++++++.+ ..+..|.||||+|+..|+.+++++|++++.... ..+..|.||||.|+..++.+++++|++.+
T Consensus 160 ~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g- 235 (437)
T 1n11_A 160 RVAELLLERDAHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH--SPAWNGYTPLHIAAKQNQVEVARSLLQYG- 235 (437)
T ss_dssp HHHHHHHHTTCCTT-CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSC--CCCTTCCCHHHHHHHTTCHHHHHHHHHTT-
T ss_pred HHHHHHHhCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC--CcCCCCCCHHHHHHHcCCHHHHHHHHHcC-
Confidence 99999999999887 678899999999999999999999999965543 45678999999999999999999999998
Q ss_pred cccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCC
Q 005862 242 ALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKG 321 (673)
Q Consensus 242 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g 321 (673)
..++..+..|.||||+|+..|+.+++++|++++++ .+..|..|.||||.|+..|+.+++++|+++| ..++..|..|
T Consensus 236 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g---~~~~~~~~~g 311 (437)
T 1n11_A 236 GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHG---VMVDATTRMG 311 (437)
T ss_dssp CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHT---CCTTCCCSSC
T ss_pred CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC---ccCCCCCCCC
Confidence 67888999999999999999999999999999988 7889999999999999999999999999976 3447789999
Q ss_pred CcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCccccccCCCCHHHHHHhh
Q 005862 322 QNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIAKQK 401 (673)
Q Consensus 322 ~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~G~T~l~~a~~~ 401 (673)
+||||+|+.+|+.+++++|++.| +++|.+|..|+||||+|++.|+.+++++|+++| ++++.+|.+|+||+++|.+.
T Consensus 312 ~t~L~~A~~~g~~~~v~~Ll~~g---ad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g-a~~~~~~~~g~t~l~~A~~~ 387 (437)
T 1n11_A 312 YTPLHVASHYGNIKLVKFLLQHQ---ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG-ASPNEVSSDGTTPLAIAKRL 387 (437)
T ss_dssp CCHHHHHHHSSCSHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCSSSCCHHHHHHHT
T ss_pred CCHHHHHHHcCcHHHHHHHHhcC---CCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCc-CCCCCCCCCCCCHHHHHHHc
Confidence 99999999999999999999998 889999999999999999999999999999987 99999999999999999999
Q ss_pred ccccCcccc
Q 005862 402 SAEINPEFF 410 (673)
Q Consensus 402 ~~~~~~~~l 410 (673)
++.+++++|
T Consensus 388 g~~~~~~~l 396 (437)
T 1n11_A 388 GYISVTDVL 396 (437)
T ss_dssp TCHHHHHHH
T ss_pred CcHHHHHHH
Confidence 987777665
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=3.3e-42 Score=360.63 Aligned_cols=296 Identities=17% Similarity=0.135 Sum_probs=261.1
Q ss_pred cCCCCCcHHHHHHh-CCccCHHHHHHHHHHhCCccccccCC-CCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccch
Q 005862 43 TSPSENTLLHIAAA-GSIHDHENMATTLARKYPFLITMQNS-KRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDV 120 (673)
Q Consensus 43 ~~~~g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~~~ll~~~~~-~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~ 120 (673)
.+.+|+|+||.||+ |+ .++|++|+++|++ ++.++. .|.||||+|+..|+.++|++|+++|++
T Consensus 21 ~~~~~~t~L~~Av~~g~----~~~V~~LL~~Gad-vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~----------- 84 (337)
T 4g8k_A 21 AAVEDNHLLIKAVQNED----VDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD----------- 84 (337)
T ss_dssp CHHHHHHHHHHHHHTTC----HHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----------
T ss_pred CCCCCChHHHHHHHcCC----HHHHHHHHHCCCC-CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc-----------
Confidence 34458999999999 99 9999999999998 777765 599999999999999999999999988
Q ss_pred hhhhhhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHH
Q 005862 121 KGLMEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKY 200 (673)
Q Consensus 121 ~~~~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~ 200 (673)
++.++..+.++++.++. .+.. .+++.++..+.+++ ..|..|.||||+|+..|+.+++++
T Consensus 85 ---~~~~~~~~~~~~~~~~~-------~~~~----------~~~~~~~~~~~~~~-~~d~~g~t~l~~A~~~~~~~~~~~ 143 (337)
T 4g8k_A 85 ---PVLRKKNGATPFILAAI-------AGSV----------KLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKF 143 (337)
T ss_dssp ---TTCCCTTCCCHHHHHHH-------HTCH----------HHHHHHHTTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHH
T ss_pred ---hhhhccCCCchhHHHHh-------cccc----------hhhHHhhhccchhh-hhccCCCCHHHHHHHcCcHHHHHH
Confidence 66789999999999999 8888 99999999999987 788999999999999999999999
Q ss_pred HHHhCCCCCc--------ccccCCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCC----HHHHH
Q 005862 201 ILEALPVNDD--------CATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDH----LEGVR 268 (673)
Q Consensus 201 Ll~~~~~~~~--------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~----~~~v~ 268 (673)
|++.+..... ...+..|.||||.|+..|+.+++++|+++.+.+++.+|..|.|++|.++..+. .++++
T Consensus 144 ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~ 223 (337)
T 4g8k_A 144 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITH 223 (337)
T ss_dssp HHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHH
T ss_pred HHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHH
Confidence 9998654322 23355789999999999999999999987668999999999999998876443 46889
Q ss_pred HHHhhCCCcccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCCcc
Q 005862 269 FLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDT 348 (673)
Q Consensus 269 ~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~ 348 (673)
+|++++++ ++.+|.+|.||||.|+..|+.++++.|++ .....++.+|.+|+||||+|+++|+.+++++|++.| +
T Consensus 224 lLl~~gad-~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~--~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G---A 297 (337)
T 4g8k_A 224 LLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLE--QEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG---A 297 (337)
T ss_dssp HHHHTTCC-TTCCCGGGCCHHHHHHHTTCHHHHHHHHT--STTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS---C
T ss_pred HHHHCCCC-CCCcCCCCCCHHHHHHHhhhhHHHHHHHH--hcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC---C
Confidence 99999998 88999999999999999999999999998 444566889999999999999999999999999998 6
Q ss_pred cccccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCcccc
Q 005862 349 LINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDII 387 (673)
Q Consensus 349 ~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~ 387 (673)
++|. .||||+|++.|+.++|++|+++| +++|..
T Consensus 298 d~n~-----~~~L~~A~~~~~~~iv~~Ll~~G-A~~d~~ 330 (337)
T 4g8k_A 298 STDC-----GDLVMTARRNYDHSLVKVLLSHG-AKEDFH 330 (337)
T ss_dssp SSTT-----CCHHHHHHHTTCHHHHHHHHHTT-CCC---
T ss_pred CCCC-----CCHHHHHHHcCCHHHHHHHHHCc-CCCCCC
Confidence 6664 46999999999999999999988 988763
No 4
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.8e-40 Score=348.74 Aligned_cols=299 Identities=22% Similarity=0.232 Sum_probs=269.1
Q ss_pred cCCCCCcHHHHHHh-CCccCHHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccchh
Q 005862 43 TSPSENTLLHIAAA-GSIHDHENMATTLARKYPFLITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVK 121 (673)
Q Consensus 43 ~~~~g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~~~ll~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~ 121 (673)
.+..|.|+||.||. |+ .+.++.|+...+..++.+|..|.||||+|+..|+.++|++|+++|++
T Consensus 20 ~~~~~~~~L~~A~~~g~----~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------------ 83 (351)
T 3utm_A 20 TGEYKKDELLEAARSGN----EEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD------------ 83 (351)
T ss_dssp HHHHHHHHHHHHHHHTC----HHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC------------
T ss_pred eccccchhHHHHHHcCC----HHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------
Confidence 45668999999999 99 99999999886666899999999999999999999999999999887
Q ss_pred hhhhhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 005862 122 GLMEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYI 201 (673)
Q Consensus 122 ~~~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~L 201 (673)
++.+|..|+||||+|+. .|+. +++++|++++++++ ..|..|.||||+|+..|+.+++++|
T Consensus 84 --~~~~~~~g~t~L~~A~~-------~g~~----------~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~L 143 (351)
T 3utm_A 84 --VHAKDKGGLVPLHNACS-------YGHY----------EVTELLLKHGACVN-AMDLWQFTPLHEAASKNRVEVCSLL 143 (351)
T ss_dssp --TTCCCTTCCCHHHHHHH-------TTCH----------HHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred --CCccCCCCCcHHHHHHH-------CCCH----------HHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 67789999999999999 9999 99999999999987 6888999999999999999999999
Q ss_pred HHhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCccccc
Q 005862 202 LEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQR 281 (673)
Q Consensus 202 l~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~ 281 (673)
++++.... ..+..|.+|++.|+..+..+.+++.... +++..++..++.+.++.++..... ....
T Consensus 144 l~~g~~~~--~~~~~g~~~l~~a~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~-~~~~ 207 (351)
T 3utm_A 144 LSHGADPT--LVNCHGKSAVDMAPTPELRERLTYEFKG-------------HSLLQAAREADLAKVKKTLALEII-NFKQ 207 (351)
T ss_dssp HHTTCCTT--CCCTTSCCHHHHCSSHHHHHHHHHHHHH-------------HHHHHHHHTTCHHHHHHHTTTCCT-TCCC
T ss_pred HHcCCCCc--cccCCCCcchHHHhhhhhHHHHHhhhcc-------------cHHHHHHHhccHHHHHHHHHhhcc-cccC
Confidence 99965543 5678899999999988888877766543 467888999999999999988765 5567
Q ss_pred ccCCChHHHHHHHc---CCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCC
Q 005862 282 NEEGFYPFHLASAN---GRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGN 358 (673)
Q Consensus 282 d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~ 358 (673)
+..|.||||.|+.. +..+++++|+++| ..++.+|..|+||||+|+.+|+.+++++|++.| +++|.+|..|+
T Consensus 208 ~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g---~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---a~~n~~d~~g~ 281 (351)
T 3utm_A 208 PQSHETALHCAVASLHPKRKQVAELLLRKG---ANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG---AKMNALDSLGQ 281 (351)
T ss_dssp TTTCCCHHHHHHHCCSTTHHHHHHHHHHTT---CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSC
T ss_pred CCCCCCHHHHHHHHhCccHHHHHHHHHHcC---CCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC---CCCCCcCCCCC
Confidence 88899999999999 5689999999966 334778999999999999999999999999998 88999999999
Q ss_pred cHHHHHHHhCCHHHHHHHHhcCCCCccccccCCCCHHHHHHh
Q 005862 359 TPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIAKQ 400 (673)
Q Consensus 359 T~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~G~T~l~~a~~ 400 (673)
||||+|+..|+.+++++|++.| ++++.+|..|+||+++|..
T Consensus 282 t~L~~A~~~~~~~~v~~Ll~~g-ad~~~~~~~g~tal~~a~~ 322 (351)
T 3utm_A 282 TALHRAALAGHLQTCRLLLSYG-SDPSIISLQGFTAAQMGNE 322 (351)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHSCH
T ss_pred CHHHHHHHcCcHHHHHHHHHcC-CCCCCcCCCCCChhhhhhH
Confidence 9999999999999999999987 9999999999999999844
No 5
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=4.4e-39 Score=327.64 Aligned_cols=273 Identities=19% Similarity=0.164 Sum_probs=226.6
Q ss_pred CCCcHHHHHHh-CCccCHHHHHHHHHHhCCcccccc-CCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccchhhh
Q 005862 46 SENTLLHIAAA-GSIHDHENMATTLARKYPFLITMQ-NSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGL 123 (673)
Q Consensus 46 ~g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~~~ll~~~-~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~ 123 (673)
+|+|+||.|++ |+ .+++++|++++++ ++.. +..|.||||+|+..|+.+++++|+++|++
T Consensus 4 ~g~~~L~~A~~~g~----~~~v~~Ll~~g~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-------------- 64 (285)
T 1wdy_A 4 EDNHLLIKAVQNED----VDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-------------- 64 (285)
T ss_dssp HHHHHHHHHHHTTC----HHHHHHHHHTTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC--------------
T ss_pred ccchHHHHHHHcCC----HHHHHHHHHcCCC-cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC--------------
Confidence 58899999999 99 9999999999988 5555 88899999999999999999999999887
Q ss_pred hhhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHHHHH
Q 005862 124 MEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYILE 203 (673)
Q Consensus 124 ~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~ 203 (673)
++.+|..|.||||+|+. .++. +++++|++++++++ ..+..|.||||+|+..|+.+++++|++
T Consensus 65 ~~~~~~~g~t~L~~A~~-------~~~~----------~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 126 (285)
T 1wdy_A 65 PVLRKKNGATPFLLAAI-------AGSV----------KLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYK 126 (285)
T ss_dssp TTCCCTTCCCHHHHHHH-------HTCH----------HHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHH
T ss_pred CcccCCCCCCHHHHHHH-------cCCH----------HHHHHHHHcCCCCC-ccCcccCCHHHHHHHhCCHHHHHHHHH
Confidence 56688899999999999 9999 99999999999887 678889999999999999999999999
Q ss_pred hCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHHhh-CCCcccccc
Q 005862 204 ALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEI-NPDSVLQRN 282 (673)
Q Consensus 204 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~d 282 (673)
.+......... +......+..|.||||+|+..|+.+++++|++. +.+ ++..|
T Consensus 127 ~g~~~~~~~~~--------------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~ 179 (285)
T 1wdy_A 127 RGANVNLRRKT--------------------------KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD-VNACD 179 (285)
T ss_dssp TTCCTTCCCCC--------------------------CHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC-TTCCC
T ss_pred hCCCccccccc--------------------------HHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCC-CCccC
Confidence 85544321100 011223466788888888888888888888887 555 67788
Q ss_pred cCCChHHHHHHHcCC----HHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHH-hCCCcccccccCCCC
Q 005862 283 EEGFYPFHLASANGR----VRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILK-ASNIDTLINEMDDDG 357 (673)
Q Consensus 283 ~~g~tpLh~A~~~g~----~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~-~~~~~~~in~~d~~G 357 (673)
..|.||||.|+..++ .+++++|+++| ..++.+|..|+||||+|+.+|+.+++++|++ .+ .+++.+|.+|
T Consensus 180 ~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g---~~~~~~~~~g 253 (285)
T 1wdy_A 180 NMGRNALIHALLSSDDSDVEAITHLLLDHG---ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH---IEINDTDSDG 253 (285)
T ss_dssp TTSCCHHHHHHHCSCTTTHHHHHHHHHHTT---CCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSS---CCTTCCCTTS
T ss_pred CCCCCHHHHHHHccccchHHHHHHHHHHcC---CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccC---CCccccCCCC
Confidence 888888888888888 88888888865 3346778888889999998888899988888 55 6788888899
Q ss_pred CcHHHHHHHhCCHHHHHHHHhcCCCCcccccc
Q 005862 358 NTPLHLAALYGRHLAAAILVWDGRANQDIINF 389 (673)
Q Consensus 358 ~T~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~ 389 (673)
+||||+|++.|+.+++++|+++| ++++.+|.
T Consensus 254 ~t~l~~A~~~~~~~i~~~Ll~~G-a~~~~~d~ 284 (285)
T 1wdy_A 254 KTALLLAVELKLKKIAELLCKRG-ASTDCGDL 284 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHS-SCSCCSSC
T ss_pred CcHHHHHHHcCcHHHHHHHHHcC-CCCCcccc
Confidence 99999999999999999998887 88888763
No 6
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=6.4e-39 Score=326.43 Aligned_cols=244 Identities=22% Similarity=0.218 Sum_probs=184.5
Q ss_pred HHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCC
Q 005862 162 SLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQP 241 (673)
Q Consensus 162 ~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 241 (673)
++++.|++.+++++...+..|.||||+|+..|+.+++++|++.+.... ..+..|.||||.|+..|+.+++++|++++
T Consensus 19 ~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g- 95 (285)
T 1wdy_A 19 DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV--LRKKNGATPFLLAAIAGSVKLLKLFLSKG- 95 (285)
T ss_dssp HHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHHHHHHHTCHHHHHHHHHTT-
T ss_pred HHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc--ccCCCCCCHHHHHHHcCCHHHHHHHHHcC-
Confidence 444444444444443334444555555555555555555555433221 23444555566655556666666666655
Q ss_pred cccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCccccc----------ccCCChHHHHHHHcCCHHHHHHHHhccCCC
Q 005862 242 ALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQR----------NEEGFYPFHLASANGRVRVMGEFFEKENMP 311 (673)
Q Consensus 242 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~----------d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~ 311 (673)
.+++..|..|.||||+|+..|+.+++++|++++++ .+.. +..|.||||.|+..|+.+++++|+++ ..
T Consensus 96 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~ 172 (285)
T 1wdy_A 96 ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN-VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE--MG 172 (285)
T ss_dssp CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHT--SC
T ss_pred CCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCC-cccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHh--cC
Confidence 45566677777777777777777777777777766 3333 78899999999999999999999994 33
Q ss_pred CCcccCCCCCCcHHHHHHhcCC----HHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCcccc
Q 005862 312 PPTELLNTKGQNILHVAAKKGK----SDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDII 387 (673)
Q Consensus 312 ~~~~~~d~~g~t~Lh~A~~~~~----~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~ 387 (673)
..++..|..|+||||.|+..++ .+++++|++.| +++|.+|.+|+||||+|++.|+.+++++|++..+++++.+
T Consensus 173 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~ 249 (285)
T 1wdy_A 173 ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG---ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDT 249 (285)
T ss_dssp CCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTT---CCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCC
T ss_pred CCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcC---CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCcccc
Confidence 5568889999999999999999 99999999999 8899999999999999999999999999999666999999
Q ss_pred ccCCCCHHHHHHhhccccCccccCCcc
Q 005862 388 NFHGQTAYSIAKQKSAEINPEFFGNDD 414 (673)
Q Consensus 388 n~~G~T~l~~a~~~~~~~~~~~l~~~~ 414 (673)
|.+|+||+|+|++.++.+++++|.+..
T Consensus 250 ~~~g~t~l~~A~~~~~~~i~~~Ll~~G 276 (285)
T 1wdy_A 250 DSDGKTALLLAVELKLKKIAELLCKRG 276 (285)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred CCCCCcHHHHHHHcCcHHHHHHHHHcC
Confidence 999999999999999999999986654
No 7
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=5.8e-39 Score=337.25 Aligned_cols=324 Identities=19% Similarity=0.194 Sum_probs=267.6
Q ss_pred cHHHHHHHHhhhhhhhhcCcchhhHhhcccccchhccccccCCCCCcHHHHHHh-CCccCHHHHHHHHHHhCCccccccC
Q 005862 3 DANEALRLASLRSALINYNVSPFLLSEIENQDMSETFKTITSPSENTLLHIAAA-GSIHDHENMATTLARKYPFLITMQN 81 (673)
Q Consensus 3 ~~~~~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~~~ll~~~~ 81 (673)
.+.++|+.|+..+.. +....++.. .. ......|..|+||||+||. |+ .+++++|++++++ ++.+|
T Consensus 23 ~~~~~L~~A~~~g~~---~~v~~ll~~---~~---~~~~~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~-~~~~~ 88 (351)
T 3utm_A 23 YKKDELLEAARSGNE---EKLMALLTP---LN---VNCHASDGRKSTPLHLAAGYNR----VRIVQLLLQHGAD-VHAKD 88 (351)
T ss_dssp HHHHHHHHHHHHTCH---HHHHHHCCT---TT---TTCCCSSTTCCCHHHHHHHTTC----HHHHHHHHHTTCC-TTCCC
T ss_pred ccchhHHHHHHcCCH---HHHHHHHHh---cC---CCcccCCCCCCCHHHHHHHcCC----HHHHHHHHHcCCC-CCccC
Confidence 367899999999888 444444432 11 1223478889999999999 99 9999999999988 89999
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccchhhhhhhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHH
Q 005862 82 SKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLMEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLV 161 (673)
Q Consensus 82 ~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~ 161 (673)
..|.||||+|+..|+.++|++|+++|++ ++.+|..|.||||+|+. .++.
T Consensus 89 ~~g~t~L~~A~~~g~~~iv~~Ll~~g~~--------------~~~~~~~g~t~L~~A~~-------~~~~---------- 137 (351)
T 3utm_A 89 KGGLVPLHNACSYGHYEVTELLLKHGAC--------------VNAMDLWQFTPLHEAAS-------KNRV---------- 137 (351)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCC--------------TTCCCTTCCCHHHHHHH-------TTCH----------
T ss_pred CCCCcHHHHHHHCCCHHHHHHHHHCCCC--------------CCCCCCCCCCHHHHHHH-------cCCH----------
Confidence 9999999999999999999999999887 66788999999999999 9999
Q ss_pred HHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCC
Q 005862 162 SLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQP 241 (673)
Q Consensus 162 ~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 241 (673)
+++++|++++++.. ..+..|.+|+++|+..+..+.+++.... .++..++..++.+.++.++...
T Consensus 138 ~~v~~Ll~~g~~~~-~~~~~g~~~l~~a~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~~~- 201 (351)
T 3utm_A 138 EVCSLLLSHGADPT-LVNCHGKSAVDMAPTPELRERLTYEFKG--------------HSLLQAAREADLAKVKKTLALE- 201 (351)
T ss_dssp HHHHHHHHTTCCTT-CCCTTSCCHHHHCSSHHHHHHHHHHHHH--------------HHHHHHHHTTCHHHHHHHTTTC-
T ss_pred HHHHHHHHcCCCCc-cccCCCCcchHHHhhhhhHHHHHhhhcc--------------cHHHHHHHhccHHHHHHHHHhh-
Confidence 99999999999987 6889999999999998888888876653 3678888899999999998887
Q ss_pred cccccCCCCCCcHHHHHHHC---CCHHHHHHHHhhCCCcccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCC
Q 005862 242 ALLLIQDEQMNTPMHWAASV---DHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLN 318 (673)
Q Consensus 242 ~~~~~~d~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d 318 (673)
......+..|.||||+|+.. +..+++++|++.+.+ ++.+|.+|.||||.|+..|+.+++++|+++| ..++.+|
T Consensus 202 ~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---a~~n~~d 277 (351)
T 3utm_A 202 IINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHKHG---AKMNALD 277 (351)
T ss_dssp CTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCC
T ss_pred cccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC---CCCCCcC
Confidence 44455778899999999999 568999999999998 7889999999999999999999999999976 3447789
Q ss_pred CCCCcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCccccccCCCCHHHHH
Q 005862 319 TKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIA 398 (673)
Q Consensus 319 ~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~G~T~l~~a 398 (673)
..|+||||+|+.+|+.+++++|++.| ++++.+|.+|+||+|+| +.+++++|.+.. .....++.+++..|
T Consensus 278 ~~g~t~L~~A~~~~~~~~v~~Ll~~g---ad~~~~~~~g~tal~~a----~~~~~~~l~~~~----~~~~~~~~~~l~~A 346 (351)
T 3utm_A 278 SLGQTALHRAALAGHLQTCRLLLSYG---SDPSIISLQGFTAAQMG----NEAVQQILSEST----PMRTSDVDYRLLEA 346 (351)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHS----CHHHHHHHHHC-------------------
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHHcC---CCCCCcCCCCCChhhhh----hHHHHHHHHhcc----ccccCcceeehhhh
Confidence 99999999999999999999999999 88999999999999998 567888888665 23455677888888
Q ss_pred Hhhc
Q 005862 399 KQKS 402 (673)
Q Consensus 399 ~~~~ 402 (673)
++.|
T Consensus 347 ~~~g 350 (351)
T 3utm_A 347 SKAG 350 (351)
T ss_dssp ----
T ss_pred hccC
Confidence 8765
No 8
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=6.2e-39 Score=335.77 Aligned_cols=286 Identities=19% Similarity=0.200 Sum_probs=249.2
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccchhhhhhhcCC-ccCcHHHHHHHHHHhhhhccchhhhHHHHH
Q 005862 81 NSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLMEMKNV-RGNTALHEALNALLDAKKDKNKQKEERVTL 159 (673)
Q Consensus 81 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~d~-~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~ 159 (673)
+.+|.||||.|++.|+.++|++|+++|++ ++.++. .|+||||+|+. .|+.
T Consensus 22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gad--------------vn~~~~~~g~TpLh~A~~-------~g~~-------- 72 (337)
T 4g8k_A 22 AVEDNHLLIKAVQNEDVDLVQQLLEGGAN--------------VNFQEEEGGWTPLHNAVQ-------MSRE-------- 72 (337)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTCC--------------TTCCCTTTCCCHHHHHHH-------TTCH--------
T ss_pred CCCCChHHHHHHHcCCHHHHHHHHHCCCC--------------CCccCCCCCcCHHHHHHH-------cCCH--------
Confidence 34478999999999999999999999998 555554 59999999999 9999
Q ss_pred HHHHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHc
Q 005862 160 LVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDK 239 (673)
Q Consensus 160 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 239 (673)
+++++|+++|+++. .++..+.+|++.++..+...++..+++..... ...+..|.||||.|+..|+.++++++++.
T Consensus 73 --~iv~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ 147 (337)
T 4g8k_A 73 --DIVELLLRHGADPV-LRKKNGATPFILAAIAGSVKLLKLFLSKGADV--NECDFYGFTAFMEAAVYGKVKALKFLYKR 147 (337)
T ss_dssp --HHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT--TCBCTTCCBHHHHHHHTTCHHHHHHHHHT
T ss_pred --HHHHHHHHcCCchh-hhccCCCchhHHHHhcccchhhHHhhhccchh--hhhccCCCCHHHHHHHcCcHHHHHHHHHc
Confidence 99999999999988 68889999999999999999999999885544 36678899999999999999999999998
Q ss_pred CCcccc----------cCCCCCCcHHHHHHHCCCHHHHHHHHhh-CCCcccccccCCChHHHHHHHcCC----HHHHHHH
Q 005862 240 QPALLL----------IQDEQMNTPMHWAASVDHLEGVRFLYEI-NPDSVLQRNEEGFYPFHLASANGR----VRVMGEF 304 (673)
Q Consensus 240 ~~~~~~----------~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~----~~iv~~L 304 (673)
+ .+++ ..+..|.||||+|+..|+.+++++|+++ +++ ++..|..|.|++|.++..+. .+++++|
T Consensus 148 g-a~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad-~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lL 225 (337)
T 4g8k_A 148 G-ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLL 225 (337)
T ss_dssp T-CCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCC-TTCCCTTSCCHHHHHHHHSCTTTHHHHHHHH
T ss_pred C-CCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCC-cCccCCCCCcHHHHHHHHcCcccHHHHHHHH
Confidence 8 3333 3456789999999999999999999976 566 88999999999998876543 4688999
Q ss_pred HhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCc
Q 005862 305 FEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQ 384 (673)
Q Consensus 305 l~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~~~~~ 384 (673)
+++| ..++.+|.+|+||||+|+..++.++++.|++... .++|.+|.+|+||||+|++.|+.++|++|+++| +++
T Consensus 226 l~~g---ad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~--~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G-Ad~ 299 (337)
T 4g8k_A 226 LDHG---ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH--IEINDTDSDGKTALLLAVELKLKKIAELLCKRG-AST 299 (337)
T ss_dssp HHTT---CCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTT--CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS-CSS
T ss_pred HHCC---CCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcC--CcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCC
Confidence 9966 3347789999999999999999999999998643 669999999999999999999999999999887 888
Q ss_pred cccccCCCCHHHHHHhhccccCccccCCc
Q 005862 385 DIINFHGQTAYSIAKQKSAEINPEFFGND 413 (673)
Q Consensus 385 ~~~n~~G~T~l~~a~~~~~~~~~~~l~~~ 413 (673)
+. .|||++|+..++.+++++|++.
T Consensus 300 n~-----~~~L~~A~~~~~~~iv~~Ll~~ 323 (337)
T 4g8k_A 300 DC-----GDLVMTARRNYDHSLVKVLLSH 323 (337)
T ss_dssp TT-----CCHHHHHHHTTCHHHHHHHHHT
T ss_pred CC-----CCHHHHHHHcCCHHHHHHHHHC
Confidence 65 4699999999988888776443
No 9
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=5e-38 Score=320.66 Aligned_cols=259 Identities=17% Similarity=0.160 Sum_probs=166.7
Q ss_pred CCCCCcHHHHHHh-CCccCHHHHHHHHHHhC----------CccccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccCC
Q 005862 44 SPSENTLLHIAAA-GSIHDHENMATTLARKY----------PFLITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGM 112 (673)
Q Consensus 44 ~~~g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~----------~~ll~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~ 112 (673)
+..|.|+||+|+. |+ .+.+..++..+ ...++.+|..|.||||+|+..|+.++|++|++.|++
T Consensus 12 ~~~~~~~lH~Aa~~g~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~--- 84 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGK----QGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA--- 84 (285)
T ss_dssp ----------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC---
T ss_pred chHHHHHHHHHhhcCC----CCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC---
Confidence 4568999999999 98 77666665543 223567788899999999999999999999988776
Q ss_pred CCCcccchhhhhhhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHc
Q 005862 113 TSSSQIDVKGLMEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVES 192 (673)
Q Consensus 113 ~~~~~~~~~~~~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 192 (673)
++.+|..|+||||+|+. .++. +++++|++.+++++ ..|..|.||||+|+..
T Consensus 85 -----------~~~~~~~g~t~L~~A~~-------~g~~----------~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~ 135 (285)
T 3d9h_A 85 -----------VNIITADHVSPLHEACL-------GGHL----------SCVKILLKHGAQVN-GVTADWHTPLFNACVS 135 (285)
T ss_dssp -----------SCEECTTCCCHHHHHHH-------TTCH----------HHHHHHHHTTCCSS-CCCTTCCCHHHHHHHH
T ss_pred -----------CCCcCCCCCCHHHHHHH-------CCcH----------HHHHHHHHCCCCCC-CCCCCCCCHHHHHHHc
Confidence 56688889999999988 8888 88888888888876 5677778888888888
Q ss_pred CCHHHHHHHHHhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHHh
Q 005862 193 KNEDILKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYE 272 (673)
Q Consensus 193 g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~ 272 (673)
|+.+++++|++.+.... .+..|.||||+|+..|+.+++++|++
T Consensus 136 ~~~~~v~~Ll~~g~~~~-------------------------------------~~~~g~t~L~~A~~~g~~~~v~~Ll~ 178 (285)
T 3d9h_A 136 GSWDCVNLLLQHGASVQ-------------------------------------PESDLASPIHEAARRGHVECVNSLIA 178 (285)
T ss_dssp TCHHHHHHHHHTTCCSS-------------------------------------CSCTTSCHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCC-------------------------------------CCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 88877777777643321 12235666666666666666666666
Q ss_pred hCCCcccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCCcccccc
Q 005862 273 INPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINE 352 (673)
Q Consensus 273 ~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~ 352 (673)
++++ ++..|..|.||||+|+..|+.+++++|+++|..+ + .+..|+||||+|+..++.+++++|++.| ++++.
T Consensus 179 ~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~---~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---ad~~~ 250 (285)
T 3d9h_A 179 YGGN-IDHKISHLGTPLYLACENQQRACVKKLLESGADV---N-QGKGQDSPLHAVVRTASEELACLLMDFG---ADTQA 250 (285)
T ss_dssp TTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCT---T-CCBTTBCHHHHHHHTTCHHHHHHHHHTT---CCTTC
T ss_pred CCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCC---C-CCCCCCCHHHHHHHcCCHHHHHHHHHCC---CCCCC
Confidence 6665 5666667777777777777777777777754322 2 2666777777777777777777777776 66777
Q ss_pred cCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCcc
Q 005862 353 MDDDGNTPLHLAALYGRHLAAAILVWDGRANQD 385 (673)
Q Consensus 353 ~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~~~~~~ 385 (673)
+|.+|+||||+|+ ++.+++++|+++.++++.
T Consensus 251 ~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~ 281 (285)
T 3d9h_A 251 KNAEGKRPVELVP--PESPLAQLFLEREGASLP 281 (285)
T ss_dssp CCTTSCCGGGGSC--TTSHHHHHHHHHC-----
T ss_pred cCCCCCCHHHHhc--CccHHHHHHHHhhccCCC
Confidence 7777777777777 345777777777555543
No 10
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.9e-38 Score=335.22 Aligned_cols=289 Identities=15% Similarity=0.196 Sum_probs=212.1
Q ss_pred CcHHHHHHh-CCccCHHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccchhhhhhh
Q 005862 48 NTLLHIAAA-GSIHDHENMATTLARKYPFLITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLMEM 126 (673)
Q Consensus 48 ~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~~~ll~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~ 126 (673)
+++++-+.. |+ .+++++++.. .++..|.||||+|+..++ +++++|++. .++.
T Consensus 67 ~~~~~~~~~~g~----~~~~~~~~~~------~~~~~g~t~L~~Aa~~~~-~~~~~L~~~----------------~~n~ 119 (373)
T 2fo1_E 67 QGYGNGNDFLGD----FNHTNLQIPT------EPEPESPIKLHTEAAGSY-AITEPITRE----------------SVNI 119 (373)
T ss_dssp -------------------------------------CCCHHHHHHHSSS-CCCSCCSTT----------------TTTT
T ss_pred cccCCCCCcccc----cccccccccc------CCCCCCccHHHHHhcCCc-hHHHHhccc----------------cccc
Confidence 345666777 88 7787777543 457889999999999664 777777643 2566
Q ss_pred cC-CccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHHHHHhC
Q 005862 127 KN-VRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYILEAL 205 (673)
Q Consensus 127 ~d-~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~ 205 (673)
+| ..|+||||+|+. .|+...... .+...++.|++.|++++ ..|..|.||||+|+..|+.+++++|++++
T Consensus 120 ~d~~~g~t~Lh~Aa~-------~g~~~~v~~--Ll~~~~~~ll~~ga~vn-~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g 189 (373)
T 2fo1_E 120 IDPRHNRTVLHWIAS-------NSSAEKSED--LIVHEAKECIAAGADVN-AMDCDENTPLMLAVLARRRRLVAYLMKAG 189 (373)
T ss_dssp CCCSSCCCHHHHHHC-------TTCCSCCTT--HHHHHHHHHHHTCCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred cCCcCCCCHHHHHHH-------CCCHHHHHH--HHHHHHHHHHhcCCCCc-CCCCCCCCHHHHHHHcChHHHHHHHHHCC
Confidence 77 799999999999 888711110 01123344558888887 67889999999999999999999999986
Q ss_pred CCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCC--cccccCCCCCCcHHHHHHHCC---CHHHHHHHHhhCCCccc-
Q 005862 206 PVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQP--ALLLIQDEQMNTPMHWAASVD---HLEGVRFLYEINPDSVL- 279 (673)
Q Consensus 206 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~--~~~~~~d~~g~t~Lh~A~~~g---~~~~v~~Ll~~~~~~~~- 279 (673)
.+.. ..+..|.||||.|+..|+.+++++|++.+. .+++..|..|.||||+|+..+ +.+++++|++++++...
T Consensus 190 a~~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~ 267 (373)
T 2fo1_E 190 ADPT--IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYD 267 (373)
T ss_dssp CCSC--CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCC
T ss_pred CCCc--ccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccc
Confidence 5543 566789999999999999999999998763 567788889999999999887 88999999999887321
Q ss_pred ------ccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCCccccccc
Q 005862 280 ------QRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEM 353 (673)
Q Consensus 280 ------~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~ 353 (673)
..|..|.||||+|+..|+.+++++|+++ ....++.+|..|+||||+|+.+|+.+++++|++.| ++++.+
T Consensus 268 ~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~--~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g---ad~~~~ 342 (373)
T 2fo1_E 268 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE--KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG---ASVEAV 342 (373)
T ss_dssp SGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHH--SCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT---CCSSCC
T ss_pred cccccCcccccCCCHHHHHHHhCCHHHHHHHHHh--cCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCccCC
Confidence 2566888999999999999999999874 33445778888999999999999999999999888 788888
Q ss_pred CCCCCcHHHHHHHhCCHHHHHHHHhcC
Q 005862 354 DDDGNTPLHLAALYGRHLAAAILVWDG 380 (673)
Q Consensus 354 d~~G~T~Lh~A~~~~~~~~v~~Ll~~~ 380 (673)
|.+|+||||+|+..|+.+++++|++++
T Consensus 343 d~~g~t~l~~A~~~g~~~iv~~Ll~~~ 369 (373)
T 2fo1_E 343 DATDHTARQLAQANNHHNIVDIFDRCR 369 (373)
T ss_dssp CSSSCCHHHHHHHTTCHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 888999999999999999998888766
No 11
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.5e-38 Score=335.74 Aligned_cols=313 Identities=16% Similarity=0.186 Sum_probs=223.4
Q ss_pred CCcHHHHHHh-CCccCHHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccchhhhhh
Q 005862 47 ENTLLHIAAA-GSIHDHENMATTLARKYPFLITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLME 125 (673)
Q Consensus 47 g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~~~ll~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~ 125 (673)
-+.+|+.|+. |+ .+.++.++++... +. .-.++++-+...|+.+++++++..
T Consensus 37 ~~~~l~~~~~~~~----~~~~~~~~~~~~~-~~----~~~~~~~~~~~~g~~~~~~~~~~~------------------- 88 (373)
T 2fo1_E 37 SQHSLLEASYDGY----IKRQRNELQHYSL-YP----NPQGYGNGNDFLGDFNHTNLQIPT------------------- 88 (373)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccCCcc----ccchhhhhhhhcc-cc----CccccCCCCCcccccccccccccc-------------------
Confidence 4456778888 99 8889988887655 21 224567778888999999988754
Q ss_pred hcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHHHH---
Q 005862 126 MKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYIL--- 202 (673)
Q Consensus 126 ~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll--- 202 (673)
.+|..|+||||+|+. .+ . ++++.|+.. +++...+..|.||||+|+..|+.+++++|+
T Consensus 89 ~~~~~g~t~L~~Aa~-------~~-~----------~~~~~L~~~--~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~ 148 (373)
T 2fo1_E 89 EPEPESPIKLHTEAA-------GS-Y----------AITEPITRE--SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHE 148 (373)
T ss_dssp -----CCCHHHHHHH-------SS-S----------CCCSCCSTT--TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHH
T ss_pred CCCCCCccHHHHHhc-------CC-c----------hHHHHhccc--cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence 468899999999997 55 3 566666554 344233378999999999999999888887
Q ss_pred -----HhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHHhhC---
Q 005862 203 -----EALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEIN--- 274 (673)
Q Consensus 203 -----~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~--- 274 (673)
+.+.+. +..+..|.||||.|+..|+.+++++|++.+ .+++..|..|.||||+|+..|+.+++++|++++
T Consensus 149 ~~~ll~~ga~v--n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g-a~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~ 225 (373)
T 2fo1_E 149 AKECIAAGADV--NAMDCDENTPLMLAVLARRRRLVAYLMKAG-ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLK 225 (373)
T ss_dssp HHHHHHTCCCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHH
T ss_pred HHHHHhcCCCC--cCCCCCCCCHHHHHHHcChHHHHHHHHHCC-CCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccc
Confidence 444333 366788999999999999999999999998 788899999999999999999999999999987
Q ss_pred CCcccccccCCChHHHHHHHcC---CHHHHHHHHhccCCCCC-----cccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCC
Q 005862 275 PDSVLQRNEEGFYPFHLASANG---RVRVMGEFFEKENMPPP-----TELLNTKGQNILHVAAKKGKSDTVRRILKASNI 346 (673)
Q Consensus 275 ~~~~~~~d~~g~tpLh~A~~~g---~~~iv~~Ll~~~~~~~~-----~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~ 346 (673)
.+ ++..|.+|.||||+|+..| +.+++++|+++|..++. .+..|..|+||||+|+.+|+.+++++|++.+.
T Consensus 226 ~~-~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~- 303 (373)
T 2fo1_E 226 GD-IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG- 303 (373)
T ss_dssp HT-TSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSC-
T ss_pred cC-hhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcC-
Confidence 44 7788999999999999998 89999999998755443 22367789999999999999999999998863
Q ss_pred cccccccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCccccccCCCCHHHHHHhhccccCccccCCcc
Q 005862 347 DTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIAKQKSAEINPEFFGNDD 414 (673)
Q Consensus 347 ~~~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~G~T~l~~a~~~~~~~~~~~l~~~~ 414 (673)
+++|.+|.+|+||||+|+..|+.+++++|+++| ++++.+|..|+||+|+|+..++.+++++|....
T Consensus 304 -~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g-ad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~ 369 (373)
T 2fo1_E 304 -SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG-ASVEAVDATDHTARQLAQANNHHNIVDIFDRCR 369 (373)
T ss_dssp -CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC
T ss_pred -CCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 568999999999999999999999999999987 999999999999999999999999998876654
No 12
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=9.4e-37 Score=307.11 Aligned_cols=252 Identities=15% Similarity=0.121 Sum_probs=194.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccchhhhhhhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHH
Q 005862 83 KRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLMEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVS 162 (673)
Q Consensus 83 ~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~ 162 (673)
+|.||||+|+..|+.++|++|+++|++ ++.+|..|+||||+|+. .|+. +
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~--------------~~~~~~~g~t~L~~A~~-------~g~~----------~ 50 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWA--------------VNIITADHVSPLHEACL-------GGHL----------S 50 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC--------------SSCCCTTCCCHHHHHHH-------HTCH----------H
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCC--------------CCCcCCCCCCHHHHHHH-------cCCH----------H
Confidence 588999999999999999999999877 56788899999999999 8999 9
Q ss_pred HHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCCc
Q 005862 163 LARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPA 242 (673)
Q Consensus 163 iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~ 242 (673)
++++|++.|++++ ..|..|.||||+|+..|+.+++++|++.+.... .+..|.||||.|+..|+.+++++|++.+ .
T Consensus 51 ~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~ 125 (261)
T 2xai_A 51 CVKILLKHGAQVN-GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ---PESDLASPIHEAARRGHVECVNSLIAYG-G 125 (261)
T ss_dssp HHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS---CSCTTCCHHHHHHHTTCHHHHHHHHHTT-C
T ss_pred HHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC---CCCCCCCHHHHHHHcCcHHHHHHHHHcC-C
Confidence 9999999998887 678889999999999999999999999865542 2345778888888888888888888877 6
Q ss_pred ccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCC
Q 005862 243 LLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQ 322 (673)
Q Consensus 243 ~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~ 322 (673)
+++..|..|.||||+|+..|+.+++++|++++++ ++ .+..|.||||+|+..|+.++++.|+++|. ..+.+|.+|+
T Consensus 126 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~-~~~~g~t~Lh~A~~~~~~~~v~~Ll~~ga---d~~~~d~~g~ 200 (261)
T 2xai_A 126 NIDHKISHLGTPLYLACENQQRACVKKLLESGAD-VN-QGKGQDSPLHAVARTASEELACLLMDFGA---DTQAKNAEGK 200 (261)
T ss_dssp CTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCC-TT-CCBTTBCHHHHHHHHTCHHHHHHHHHTTC---CTTCCCTTSC
T ss_pred CCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCC-CC-CCCCCCChHHHHHHcCCHHHHHHHHHcCC---CCCCcCCCCC
Confidence 6777777888888888888888888888887777 34 36777788888888888888888877552 3366777778
Q ss_pred cHHHHHHhcCCHHHHHHHHHhCCCc-----ccccccCCCCCcHHHHHHHhCCHHHHHHHH
Q 005862 323 NILHVAAKKGKSDTVRRILKASNID-----TLINEMDDDGNTPLHLAALYGRHLAAAILV 377 (673)
Q Consensus 323 t~Lh~A~~~~~~~iv~~Ll~~~~~~-----~~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll 377 (673)
||||+|+.++ +++++|++.+... ..++.+|..|+|++|.|.+....+.++.++
T Consensus 201 tpl~~A~~~~--~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~~p~~l~~~l 258 (261)
T 2xai_A 201 RPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLKQFL 258 (261)
T ss_dssp CGGGGSCTTC--THHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSSSCHHHHHHH
T ss_pred Chhhhccccc--cHHHHHHhccCCccHHHHHHHHHHHHhchhccccCcccCCcHHHHHHH
Confidence 8888777554 4677777765211 235566777777777777766666655554
No 13
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=7.6e-37 Score=307.78 Aligned_cols=252 Identities=19% Similarity=0.192 Sum_probs=223.2
Q ss_pred CCCcHHHHHHh-CCccCHHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccchhhhh
Q 005862 46 SENTLLHIAAA-GSIHDHENMATTLARKYPFLITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLM 124 (673)
Q Consensus 46 ~g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~~~ll~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~ 124 (673)
+|+||||+||. |+ .+++++|++++.+ ++.+|..|.||||+|+..|+.++|++|+++|++ +
T Consensus 2 ~g~t~L~~A~~~g~----~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--------------~ 62 (261)
T 2xai_A 2 SDWSPMHEAAIHGH----QLSLRNLISQGWA-VNIITADHVSPLHEACLGGHLSCVKILLKHGAQ--------------V 62 (261)
T ss_dssp --CCHHHHHHHHTC----HHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC--------------T
T ss_pred CCCCHHHHHHHcCC----HHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC--------------C
Confidence 58999999999 99 9999999999887 899999999999999999999999999999887 6
Q ss_pred hhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHHHHHh
Q 005862 125 EMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYILEA 204 (673)
Q Consensus 125 ~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~ 204 (673)
+.+|..|+||||+|+. .++. ++++.|++.+++.. .+.+|.||||+|+..|+.+++++|++.
T Consensus 63 ~~~~~~g~t~L~~A~~-------~~~~----------~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 123 (261)
T 2xai_A 63 NGVTADWHTPLFNACV-------SGSW----------DCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAY 123 (261)
T ss_dssp TCCCTTSCCHHHHHHH-------HTCH----------HHHHHHHHTTCCSS--CSCTTCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHH-------cCCH----------HHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence 7789999999999999 9999 99999999999886 456699999999999999999999999
Q ss_pred CCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccC
Q 005862 205 LPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEE 284 (673)
Q Consensus 205 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~ 284 (673)
+.+. ...+..|.||||.|+..++.+++++|++.+ .+++. |..|.||||+|+..|+.+++++|++++++ ++.+|.+
T Consensus 124 g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad-~~~~d~~ 198 (261)
T 2xai_A 124 GGNI--DHKISHLGTPLYLACENQQRACVKKLLESG-ADVNQ-GKGQDSPLHAVARTASEELACLLMDFGAD-TQAKNAE 198 (261)
T ss_dssp TCCT--TCCBTTTBCHHHHHHHTTCHHHHHHHHHHT-CCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred CCCC--CcCCCCCCCHHHHHHHhCCHHHHHHHHHcC-CCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCC-CCCcCCC
Confidence 6554 356788999999999999999999999999 56664 88999999999999999999999999998 8899999
Q ss_pred CChHHHHHHHcCCHHHHHHHHhccCCCC-----CcccCCCCCCcHHHHHHhcCCHHHHHHHHH
Q 005862 285 GFYPFHLASANGRVRVMGEFFEKENMPP-----PTELLNTKGQNILHVAAKKGKSDTVRRILK 342 (673)
Q Consensus 285 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~-----~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~ 342 (673)
|.||+|+|+..+ ++++.|++++..+. ....+|..|+|++|.|.+...++.++.++.
T Consensus 199 g~tpl~~A~~~~--~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~~p~~l~~~l~ 259 (261)
T 2xai_A 199 GKRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLKQFLL 259 (261)
T ss_dssp SCCGGGGSCTTC--THHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSSSCHHHHHHHT
T ss_pred CCChhhhccccc--cHHHHHHhccCCccHHHHHHHHHHHHhchhccccCcccCCcHHHHHHHh
Confidence 999999999665 48888998653332 234678899999999999888877776654
No 14
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=3.2e-37 Score=326.35 Aligned_cols=272 Identities=18% Similarity=0.170 Sum_probs=179.9
Q ss_pred cCCCCCcHHHHHHh-CCccCHHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccchh
Q 005862 43 TSPSENTLLHIAAA-GSIHDHENMATTLARKYPFLITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVK 121 (673)
Q Consensus 43 ~~~~g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~~~ll~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~ 121 (673)
.|..|+||||+||. |+ .++|++|++++.+ ++..|..|.||||+|+..|+.++|++|+++|++.
T Consensus 16 ~d~~g~t~L~~Aa~~g~----~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~----------- 79 (364)
T 3ljn_A 16 SDDENMEKIHVAARKGQ----TDEVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH----------- 79 (364)
T ss_dssp CCHHHHHHHHHHHHHTC----HHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC-----------
T ss_pred cCCCCCCHHHHHHHcCC----HHHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc-----------
Confidence 55566666666666 66 6666666666655 5666666666666666666666666666665531
Q ss_pred hhhhhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhc----CCCcccccCCCCchHHHHHHHcCCHHH
Q 005862 122 GLMEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSE----DPNASYLKNVDCKSPLYLAVESKNEDI 197 (673)
Q Consensus 122 ~~~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~----~~~~~~~~~~~g~tpL~~A~~~g~~~i 197 (673)
.+..|.||||+|+. .++. +++++|++. +.+...
T Consensus 80 -----~~~~g~t~L~~A~~-------~g~~----------~~v~~Ll~~~~~~~~~~~~--------------------- 116 (364)
T 3ljn_A 80 -----SLWHGQKPIHLAVM-------ANKT----------DLVVALVEGAKERGQMPES--------------------- 116 (364)
T ss_dssp -----CCBTTBCHHHHHHH-------TTCH----------HHHHHHHHHHHHHTCCHHH---------------------
T ss_pred -----cccCCCCHHHHHHH-------cCCH----------HHHHHHHHhccccCCCHHH---------------------
Confidence 22356666666666 6666 666666665 333221
Q ss_pred HHHHHHhCCC-----CCcccccCCCCcHHHHHHHhC--cHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHH
Q 005862 198 LKYILEALPV-----NDDCATKLEGKSPVKVAIELQ--KLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFL 270 (673)
Q Consensus 198 v~~Ll~~~~~-----~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~L 270 (673)
++..... ......+..|.||||.|+..| +.+++++|++.+ .+++..|..|.||||+|+..|+.+++++|
T Consensus 117 ---~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~g-a~~~~~d~~g~t~L~~A~~~g~~~~v~~L 192 (364)
T 3ljn_A 117 ---LLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLG-ASPTAKDKADETPLMRAMEFRNREALDLM 192 (364)
T ss_dssp ---HHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred ---HHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCCHHHHHHH
Confidence 0000000 001124556777777777777 777777777776 66777777788888888888888888888
Q ss_pred HhhCCCc----ccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCC
Q 005862 271 YEINPDS----VLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNI 346 (673)
Q Consensus 271 l~~~~~~----~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~ 346 (673)
++++++. ++..|..|.||||+|+..|+.+++++|+++|. .++..|..|+||||+|+..|+.+++++|++.+..
T Consensus 193 l~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga---d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 269 (364)
T 3ljn_A 193 MDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGI---DVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDV 269 (364)
T ss_dssp HHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTC---CTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCH
T ss_pred HhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC---CCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCc
Confidence 8776653 56677778888888888888888888887552 2366777788888888888888888888877611
Q ss_pred ---------cccccccCCCCCcHHHHHHHhCCHHHHHHHHhcC
Q 005862 347 ---------DTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380 (673)
Q Consensus 347 ---------~~~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~ 380 (673)
.......+..|+|||+.|+..++.+.+..|+..+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~ 312 (364)
T 3ljn_A 270 FLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEK 312 (364)
T ss_dssp HHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHH
T ss_pred hhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHH
Confidence 0111225667788888888888777777777665
No 15
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=5e-36 Score=304.96 Aligned_cols=269 Identities=17% Similarity=0.123 Sum_probs=160.0
Q ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccchhhhhhhcCCccCcHHHHHHHHHHhhhhccchhhhHH
Q 005862 77 ITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLMEMKNVRGNTALHEALNALLDAKKDKNKQKEER 156 (673)
Q Consensus 77 l~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~ 156 (673)
++.+|..|.||||+|++.|+.++|++|+++|++. ..++.+|..|+||||+|+. .|+.
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----------~~~~~~~~~g~t~L~~A~~-------~g~~----- 58 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH-----------EYLDLQNDLGQTALHLAAI-------LGEA----- 58 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTS-----------GGGGCCCTTSCCHHHHHHH-------HTCH-----
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc-----------ccccccCCCCCCHHHHHHH-------cCCH-----
Confidence 4556667777777777777777777777666541 1245566677777777776 6666
Q ss_pred HHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHH
Q 005862 157 VTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMM 236 (673)
Q Consensus 157 ~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 236 (673)
+++++|+++|++++ ..+..|.||||+|+..|+.+++++|++.+....... ..+.
T Consensus 59 -----~~v~~Ll~~ga~~~-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~----~~~~---------------- 112 (282)
T 1oy3_D 59 -----STVEKLYAAGAGVL-VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDA----SDTY---------------- 112 (282)
T ss_dssp -----HHHHHHHHTTCCSS-CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC------------------------
T ss_pred -----HHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhh----HHHH----------------
Confidence 77777777776665 556667777777777777777777776643321100 0000
Q ss_pred HHcCCcccccCCCCCCcHHHHHHHCCCHHHHHH-HHhhCCCcccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcc
Q 005862 237 HDKQPALLLIQDEQMNTPMHWAASVDHLEGVRF-LYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTE 315 (673)
Q Consensus 237 l~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~-Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~ 315 (673)
+... .......+.++++.++..+....... +...+.+ ++..|..|.||||.|+..|+.+++++|+++|.. ++
T Consensus 113 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~ 185 (282)
T 1oy3_D 113 LTQS---QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ-LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD---LN 185 (282)
T ss_dssp ----------------------------------CCCGGGG-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC---TT
T ss_pred hhcc---cccCcchhcchhhhccccccchhhhhhhhhhhhc-CCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC---CC
Confidence 0000 11122334556666555444333333 3333333 667788888888888888888888888886632 24
Q ss_pred cCCC-CCCcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCccccccCCCCH
Q 005862 316 LLNT-KGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTA 394 (673)
Q Consensus 316 ~~d~-~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~G~T~ 394 (673)
..+. .|+||||+|+.+|+.+++++|++.| ++++.+|.+|+||||+|+..|+.+++++|+++| ++++.+|.+|.||
T Consensus 186 ~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g---ad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tp 261 (282)
T 1oy3_D 186 KPEPTCGRTPLHLAVEAQAASVLELLLKAG---ADPTARMYGGRTPLGSALLRPNPILARLLRAHG-APEPEDGGDKLSP 261 (282)
T ss_dssp CCCTTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTT-CCCCCCC------
T ss_pred CCCCCCCcCHHHHHHHcCCHHHHHHHHHcC---CCCcccccCCCCHHHHHHHcCCcHHHHHHHHcC-CCcCcCCCccccc
Confidence 4553 4899999999999999999999998 888999999999999999999999999999887 9999999999999
Q ss_pred HHHHHhhcccc
Q 005862 395 YSIAKQKSAEI 405 (673)
Q Consensus 395 l~~a~~~~~~~ 405 (673)
+++|......+
T Consensus 262 l~~a~~~~~~~ 272 (282)
T 1oy3_D 262 CSSSGSDSDSD 272 (282)
T ss_dssp -----------
T ss_pred ccccCCccccc
Confidence 99998766443
No 16
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.2e-36 Score=307.28 Aligned_cols=252 Identities=16% Similarity=0.131 Sum_probs=198.3
Q ss_pred CCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCC----------cccccCCCCchHHHHHHHcCCHHH
Q 005862 128 NVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPN----------ASYLKNVDCKSPLYLAVESKNEDI 197 (673)
Q Consensus 128 d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~----------~~~~~~~~g~tpL~~A~~~g~~~i 197 (673)
..+|.|+||+|+. .|+. +.+..++..++. .....+..|.||||+|+..|+.++
T Consensus 12 ~~~~~~~lH~Aa~-------~g~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~ 74 (285)
T 3d9h_A 12 SGLVPRGSHMASM-------DGKQ----------GGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLS 74 (285)
T ss_dssp -----------------------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHhh-------cCCC----------CCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHH
Confidence 4579999999999 8886 555554443211 123578899999999999999999
Q ss_pred HHHHHHhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCc
Q 005862 198 LKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDS 277 (673)
Q Consensus 198 v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~ 277 (673)
+++|++.+... +..+..|.||||.|+..|+.+++++|++.+ .+++.+|..|.||||+|+..|+.+++++|++++++
T Consensus 75 v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~- 150 (285)
T 3d9h_A 75 LRNLISQGWAV--NIITADHVSPLHEACLGGHLSCVKILLKHG-AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS- 150 (285)
T ss_dssp HHHHHHTTCCS--CEECTTCCCHHHHHHHTTCHHHHHHHHHTT-CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-
T ss_pred HHHHHHCCCCC--CCcCCCCCCHHHHHHHCCcHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCC-
Confidence 99999986543 367788999999999999999999999998 78899999999999999999999999999999988
Q ss_pred ccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCC
Q 005862 278 VLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDG 357 (673)
Q Consensus 278 ~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G 357 (673)
.+ .+.+|.||||+|+..|+.+++++|+++| ..++..|..|+||||+|+.+|+.+++++|++.+ ++++. |..|
T Consensus 151 ~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~-~~~g 222 (285)
T 3d9h_A 151 VQ-PESDLASPIHEAARRGHVECVNSLIAYG---GNIDHKISHLGTPLYLACENQQRACVKKLLESG---ADVNQ-GKGQ 222 (285)
T ss_dssp SS-CSCTTSCHHHHHHHHTCHHHHHHHHHTT---CCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTT---CCTTC-CBTT
T ss_pred CC-CCCCCCCHHHHHHHcCCHHHHHHHHHCC---CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCC---CCCCC-CCCC
Confidence 33 3456999999999999999999999966 334778999999999999999999999999998 77774 8999
Q ss_pred CcHHHHHHHhCCHHHHHHHHhcCCCCccccccCCCCHHHHHHhhccccCccccC
Q 005862 358 NTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIAKQKSAEINPEFFG 411 (673)
Q Consensus 358 ~T~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~G~T~l~~a~~~~~~~~~~~l~ 411 (673)
+||||+|++.++.+++++|++.| ++++.+|.+|+||+|+|+.. .+++++|.
T Consensus 223 ~t~L~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~~--~~~~~~Ll 273 (285)
T 3d9h_A 223 DSPLHAVVRTASEELACLLMDFG-ADTQAKNAEGKRPVELVPPE--SPLAQLFL 273 (285)
T ss_dssp BCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCGGGGSCTT--SHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHhcCc--cHHHHHHH
Confidence 99999999999999999999987 99999999999999999843 34444443
No 17
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=7.2e-36 Score=299.19 Aligned_cols=240 Identities=18% Similarity=0.179 Sum_probs=127.5
Q ss_pred hhhcCCccCcHHHHHHHHHHhhhhccchhh---hHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHH
Q 005862 124 MEMKNVRGNTALHEALNALLDAKKDKNKQK---EERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKY 200 (673)
Q Consensus 124 ~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~---~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~ 200 (673)
++.+|..|+||||+|+. .|+... ........++++.|+++++++....|..|.||||+|+..|+.+++++
T Consensus 3 vn~~d~~g~tpL~~A~~-------~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~ 75 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASC-------SGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKR 75 (253)
T ss_dssp --------------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred CCCCCCCCCcHHHHHHh-------ccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHH
Confidence 67899999999999998 662100 00000011677777777777665566677777777777777777777
Q ss_pred HHHhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccc
Q 005862 201 ILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQ 280 (673)
Q Consensus 201 Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~ 280 (673)
|++.+... ...+..|.||||.|+..++.+++++|++.++.+++..|..|.||||+|+..|+.+++++|++++++ ++.
T Consensus 76 Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~ 152 (253)
T 1yyh_A 76 LLEASADA--NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNA 152 (253)
T ss_dssp HHHTTCCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC-TTC
T ss_pred HHHcCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCC-CCC
Confidence 77764433 234556667777777777777777777666556666666666777776666666666666666666 556
Q ss_pred cccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcH
Q 005862 281 RNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTP 360 (673)
Q Consensus 281 ~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~ 360 (673)
.|.+|.||||+|+..|+.+++++|+++|. .++.+|..|+||||+|+.+|+.+++++|++.| ++++.+|..|+||
T Consensus 153 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga---~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g---a~~~~~d~~g~tp 226 (253)
T 1yyh_A 153 VDDLGKSALHWAAAVNNVDAAVVLLKNGA---NKDMQNNREETPLFLAAREGSYETAKVLLDHF---ANRDITDHMDRLP 226 (253)
T ss_dssp BCTTSCBHHHHHHHHTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT---CCTTCCCTTCCCH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCC---CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC---CCccccccCCCCH
Confidence 66666666666666666666666666442 23555666666666666666666666666666 5666666666666
Q ss_pred HHHHHHhCCHHHHHHHHhc
Q 005862 361 LHLAALYGRHLAAAILVWD 379 (673)
Q Consensus 361 Lh~A~~~~~~~~v~~Ll~~ 379 (673)
||+|++.|+.+++++|...
T Consensus 227 l~~A~~~g~~~i~~~l~~~ 245 (253)
T 1yyh_A 227 RDIAQERMHHDIVRLLDLE 245 (253)
T ss_dssp HHHHHHTTCHHHHHHHHC-
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 6666666666666666643
No 18
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.7e-36 Score=320.80 Aligned_cols=249 Identities=21% Similarity=0.208 Sum_probs=201.6
Q ss_pred cccCCCCCcHHHHHHh-CCccCHHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccc
Q 005862 41 TITSPSENTLLHIAAA-GSIHDHENMATTLARKYPFLITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQID 119 (673)
Q Consensus 41 ~~~~~~g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~~~ll~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~ 119 (673)
+..|..|.||||+||. |+ .+++++|++++++ ..+..|.||||+|+..|+.++|++|++++++.+..
T Consensus 47 ~~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~---~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~------ 113 (364)
T 3ljn_A 47 TIQNRFGCTALHLACKFGC----VDTAKYLASVGEV---HSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQM------ 113 (364)
T ss_dssp TCCCTTCCCHHHHHHHHCC----HHHHHHHHHHCCC---CCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCC------
T ss_pred cccCCCCCcHHHHHHHcCC----HHHHHHHHHCCCC---ccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCC------
Confidence 4578899999999999 99 9999999999984 33457999999999999999999999986542221
Q ss_pred hhhhhhhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHcC--CHHH
Q 005862 120 VKGLMEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESK--NEDI 197 (673)
Q Consensus 120 ~~~~~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g--~~~i 197 (673)
+-..... .... .+ .... ....+..|.||||+|+..| +.++
T Consensus 114 --------------~~~~~~~-------~~~~----------~~------~~~~-~~~~~~~g~t~L~~A~~~g~~~~~~ 155 (364)
T 3ljn_A 114 --------------PESLLNE-------CDER----------EV------NEIG-SHVKHCKGQTALHWCVGLGPEYLEM 155 (364)
T ss_dssp --------------HHHHHTC-------CCCC----------CE------EEET-TEEEEESCCCHHHHHHHSCGGGHHH
T ss_pred --------------HHHHHhh-------cchH----------hh------hhhc-cccCCCCCCCHHHHHHHcCCchHHH
Confidence 1000000 0000 00 0001 1146778999999999999 9999
Q ss_pred HHHHHHhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCCcc-----cccCCCCCCcHHHHHHHCCCHHHHHHHHh
Q 005862 198 LKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPAL-----LLIQDEQMNTPMHWAASVDHLEGVRFLYE 272 (673)
Q Consensus 198 v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-----~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~ 272 (673)
+++|++.+.+. ...+..|.||||.|+..|+.+++++|++.+ .+ ++..|..|+||||+|+..|+.+++++|++
T Consensus 156 v~~Ll~~ga~~--~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 232 (364)
T 3ljn_A 156 IKILVQLGASP--TAKDKADETPLMRAMEFRNREALDLMMDTV-PSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE 232 (364)
T ss_dssp HHHHHHHTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHHC-SCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHcCCCC--cccCCCCCCHHHHHHHcCCHHHHHHHHhcc-cccccccccccCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 99999996554 356788999999999999999999999998 44 88899999999999999999999999999
Q ss_pred hCCCcccccccCCChHHHHHHHcCCHHHHHHHHhccCCC---------CCcccCCCCCCcHHHHHHhcCCHHHHHHHHHh
Q 005862 273 INPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMP---------PPTELLNTKGQNILHVAAKKGKSDTVRRILKA 343 (673)
Q Consensus 273 ~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~---------~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~ 343 (673)
++++ ++..|..|.||||+|+..|+.+++++|++++..+ ......+..++++++.|+..++.+.+..|++.
T Consensus 233 ~gad-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~ 311 (364)
T 3ljn_A 233 MGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQE 311 (364)
T ss_dssp TTCC-TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHH
T ss_pred cCCC-CCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHH
Confidence 9999 7899999999999999999999999999975321 11123567889999999999988888878776
Q ss_pred C
Q 005862 344 S 344 (673)
Q Consensus 344 ~ 344 (673)
+
T Consensus 312 ~ 312 (364)
T 3ljn_A 312 K 312 (364)
T ss_dssp H
T ss_pred H
Confidence 5
No 19
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=7.8e-36 Score=298.93 Aligned_cols=230 Identities=20% Similarity=0.209 Sum_probs=120.0
Q ss_pred ccCCCCCcHHHHHHh-CCc---------cCHHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccC
Q 005862 42 ITSPSENTLLHIAAA-GSI---------HDHENMATTLARKYPFLITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSG 111 (673)
Q Consensus 42 ~~~~~g~t~Lh~Aa~-g~~---------~~~~e~v~~Ll~~~~~ll~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~ 111 (673)
.+|.+|+||||+|+. |+. ++..+++++|++++++..+..|..|.||||+|+..|+.++|++|+++|++
T Consensus 5 ~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-- 82 (253)
T 1yyh_A 5 VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-- 82 (253)
T ss_dssp -----------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC--
T ss_pred CCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC--
Confidence 467889999999998 820 01177777777777775555677777777777777777777777777766
Q ss_pred CCCCcccchhhhhhhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHH
Q 005862 112 MTSSSQIDVKGLMEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVE 191 (673)
Q Consensus 112 ~~~~~~~~~~~~~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 191 (673)
++.+|..|+||||+|+. .++. +++++|++.++......+..|.||||+|+.
T Consensus 83 ------------~~~~~~~g~t~L~~A~~-------~~~~----------~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~ 133 (253)
T 1yyh_A 83 ------------ANIQDNMGRTPLHAAVS-------ADAQ----------GVFQILIRNRATDLDARMHDGTTPLILAAR 133 (253)
T ss_dssp ------------TTCCCTTSCCHHHHHHH-------HTCH----------HHHHHHHHSTTSCTTCCCTTCCCHHHHHHH
T ss_pred ------------CCCCCCCCCCHHHHHHH-------cCCH----------HHHHHHHHcCCCCccccCCCCCcHHHHHHH
Confidence 45567777777777777 7777 777777777663333556666666666666
Q ss_pred cCCHHHHHHHHHhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHH
Q 005862 192 SKNEDILKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLY 271 (673)
Q Consensus 192 ~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll 271 (673)
.|+.+++++|++.+... ...+..|.||||.|+..|+.+++++|++.+ .+++.+|..|.||||+|+..|+.+++++|+
T Consensus 134 ~~~~~~v~~Ll~~g~~~--~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll 210 (253)
T 1yyh_A 134 LAVEGMLEDLINSHADV--NAVDDLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGSYETAKVLL 210 (253)
T ss_dssp HTCSSHHHHHHHTTCCT--TCBCTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred cChHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHCCCHHHHHHHH
Confidence 66666666666653332 233445555555555555555555555555 445555555555555555555555555555
Q ss_pred hhCCCcccccccCCChHHHHHHHcCCHHHHHHHHh
Q 005862 272 EINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFE 306 (673)
Q Consensus 272 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~ 306 (673)
+++++ .+.+|..|.||+|+|+++|+.+++++|..
T Consensus 211 ~~ga~-~~~~d~~g~tpl~~A~~~g~~~i~~~l~~ 244 (253)
T 1yyh_A 211 DHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDL 244 (253)
T ss_dssp HTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHC
T ss_pred HcCCC-ccccccCCCCHHHHHHHcCCHHHHHHHHH
Confidence 55555 44555555555555555555555555554
No 20
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=3e-34 Score=284.11 Aligned_cols=221 Identities=22% Similarity=0.242 Sum_probs=129.4
Q ss_pred ccCCCCCcHHHHHHh-CCccCHHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccch
Q 005862 42 ITSPSENTLLHIAAA-GSIHDHENMATTLARKYPFLITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDV 120 (673)
Q Consensus 42 ~~~~~g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~~~ll~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~ 120 (673)
..+..|+||||+||. |+ .+++++|++++.+ ++..+..|.||||+|+..|+.+++++|+++|++
T Consensus 6 ~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------- 69 (237)
T 3b7b_A 6 MEHQNKRSPLHAAAEAGH----VDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL----------- 69 (237)
T ss_dssp CSSCCSCCHHHHHHHHTC----HHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-----------
T ss_pred cccCCCCCHHHHHHHcCc----HHHHHHHHHcCCC-cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC-----------
Confidence 356667777777777 77 7777777776665 566666677777777777777777777766655
Q ss_pred hhhhhhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHH
Q 005862 121 KGLMEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKY 200 (673)
Q Consensus 121 ~~~~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~ 200 (673)
++.+|..|.||||+|+. .++. +++++|++.++......+..|.||||+|+..|+.+++++
T Consensus 70 ---~~~~~~~g~t~L~~A~~-------~~~~----------~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 129 (237)
T 3b7b_A 70 ---VDPKDAEGSTCLHLAAK-------KGHY----------EVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKL 129 (237)
T ss_dssp ---CCCCCTTSCCHHHHHHH-------TTCH----------HHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred ---CCCCCCCCCcHHHHHHH-------cCCH----------HHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHH
Confidence 34456666677777766 6666 666666666633223455566666666666666666666
Q ss_pred HHHhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccc
Q 005862 201 ILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQ 280 (673)
Q Consensus 201 Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~ 280 (673)
|++.+... ...+..|.||||.|+..|+.+++++|++.+ .+++..|..|.||||+|+..|+.+++++|++++++ ++.
T Consensus 130 Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad-~~~ 205 (237)
T 3b7b_A 130 LLSKGSDI--NIRDNEENICLHWAAFSGCVDIAEILLAAK-CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD-VTL 205 (237)
T ss_dssp HHHTTCCT--TCCCTTSCCHHHHHHHHCCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTC
T ss_pred HHHCCCCC--CccCCCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCC-CCc
Confidence 66653332 133344555555555555555555555554 44444555555555555555555555555555544 444
Q ss_pred cccCCChHHHHHHHcCCHHHHH
Q 005862 281 RNEEGFYPFHLASANGRVRVMG 302 (673)
Q Consensus 281 ~d~~g~tpLh~A~~~g~~~iv~ 302 (673)
+|.+|.||||+|+..|+.+.+.
T Consensus 206 ~d~~g~t~l~~A~~~~~~~~~~ 227 (237)
T 3b7b_A 206 KNKEGETPLQCASLNSQVWSAL 227 (237)
T ss_dssp CCTTSCCHHHHSCTTCHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHH
Confidence 4555555555555555543333
No 21
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=5.5e-35 Score=290.09 Aligned_cols=225 Identities=22% Similarity=0.256 Sum_probs=120.9
Q ss_pred ccCCCCCcHHHHHHh-CCccCHHHHHHHHHH---hCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcc
Q 005862 42 ITSPSENTLLHIAAA-GSIHDHENMATTLAR---KYPFLITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQ 117 (673)
Q Consensus 42 ~~~~~g~t~Lh~Aa~-g~~~~~~e~v~~Ll~---~~~~ll~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~ 117 (673)
.+|.+|+||||+||. |+ .+++++|++ ..+..++..|..|.||||+|+..|+.+++++|+++|++
T Consensus 4 ~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------- 71 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGN----LPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS-------- 71 (241)
T ss_dssp ---CTTCCHHHHHHHTTC----HHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC--------
T ss_pred ccCCCCCcHHHHHHHcCC----HHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCC--------
Confidence 456667777777777 77 777777765 12223666677777777777777777777777776655
Q ss_pred cchhhhhhhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCC----CcccccCCCCchHHHHHHHcC
Q 005862 118 IDVKGLMEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDP----NASYLKNVDCKSPLYLAVESK 193 (673)
Q Consensus 118 ~~~~~~~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~----~~~~~~~~~g~tpL~~A~~~g 193 (673)
++.+|..|.||||+|+. .++. ++++.|++.++ ++. ..+..|.||||+|+..|
T Consensus 72 ------~~~~~~~g~t~l~~A~~-------~~~~----------~~~~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~ 127 (241)
T 1k1a_A 72 ------PMALDRHGQTAAHLACE-------HRSP----------TCLRALLDSAAPGTLDLE-ARNYDGLTALHVAVNTE 127 (241)
T ss_dssp ------TTCCCTTSCCHHHHHHH-------TTCH----------HHHHHHHHHSCTTSCCTT-CCCTTSCCHHHHHHHHT
T ss_pred ------ccccCCCCCCHHHHHHH-------cCCH----------HHHHHHHHcCCCcccccc-ccCcCCCcHHHHHHHcC
Confidence 44456666677777766 6666 66666666655 222 34455555555555555
Q ss_pred CHHHHHHHHHhCCCCCccccc-CCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHHh
Q 005862 194 NEDILKYILEALPVNDDCATK-LEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYE 272 (673)
Q Consensus 194 ~~~iv~~Ll~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~ 272 (673)
+.+++++|++.+.... ..+ ..|.||||.|+..|+.+++++|++.+ .+++.+|..|.||||+|+..|+.+++++|++
T Consensus 128 ~~~~~~~Ll~~g~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 204 (241)
T 1k1a_A 128 CQETVQLLLERGADID--AVDIKSGRSPLIHAVENNSLSMVQLLLQHG-ANVNAQMYSGSSALHSASGRGLLPLVRTLVR 204 (241)
T ss_dssp CHHHHHHHHHTTCCTT--CCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCcc--cccccCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 5555555555533221 111 33444444444444444444444444 3444444444444444444444444444444
Q ss_pred hCCCcccccccCCChHHHHHHHcCCHHHHHHHHh
Q 005862 273 INPDSVLQRNEEGFYPFHLASANGRVRVMGEFFE 306 (673)
Q Consensus 273 ~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~ 306 (673)
++++ ++.+|..|.||||+|+..|+.++++.|.+
T Consensus 205 ~ga~-~~~~~~~g~tpl~~A~~~~~~~i~~~l~~ 237 (241)
T 1k1a_A 205 SGAD-SSLKNCHNDTPLMVARSRRVIDILRGKAT 237 (241)
T ss_dssp TTCC-TTCCCTTSCCTTTTCSSHHHHHHHTC---
T ss_pred cCCC-CCCcCCCCCCHHHHHHhcCcHHHHhhhcc
Confidence 4444 34444444444444444444444444443
No 22
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=2.9e-34 Score=283.03 Aligned_cols=224 Identities=20% Similarity=0.206 Sum_probs=168.1
Q ss_pred CCCCCcHHHHHHh-CCccCHHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccchhh
Q 005862 44 SPSENTLLHIAAA-GSIHDHENMATTLARKYPFLITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKG 122 (673)
Q Consensus 44 ~~~g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~~~ll~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~ 122 (673)
+..++|+||.||+ |+ .+.+++|++.++..++..|..|.||||+|+..|+.++|++|+++|++
T Consensus 3 ~~~~~~~l~~A~~~g~----~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------------- 65 (231)
T 3aji_A 3 GCVSNIMICNLAYSGK----LDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP------------- 65 (231)
T ss_dssp CCCSSSHHHHHHHHTC----HHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-------------
T ss_pred CccccchHHHHHHhCC----HHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC-------------
Confidence 3458899999999 99 99999999998887888899999999999999999999999998876
Q ss_pred hhhhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHHHH
Q 005862 123 LMEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYIL 202 (673)
Q Consensus 123 ~~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll 202 (673)
++.+|..|+||||+|+. .++. +++++|++++++++ .++..|.||||+|+..|+.+++++|+
T Consensus 66 -~~~~~~~g~t~L~~A~~-------~~~~----------~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll 126 (231)
T 3aji_A 66 -VNDKDDAGWSPLHIAAS-------AGXD----------EIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLL 126 (231)
T ss_dssp -SCCCCTTSCCHHHHHHH-------HTCH----------HHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred -CCCcCCCCCCHHHHHHH-------cCHH----------HHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 56678889999999998 8888 99999999988876 56777888888888888888888888
Q ss_pred HhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccc
Q 005862 203 EALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRN 282 (673)
Q Consensus 203 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d 282 (673)
+.+.... ..+..|.||||.|+..|+.+++++|++.+ .+++.+|..|.||||+|+..|+.+++++|++++++ ++.+|
T Consensus 127 ~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~ 202 (231)
T 3aji_A 127 EGGANPD--AKDHYDATAMHRAAAKGNLKMVHILLFYK-ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS-IYIEN 202 (231)
T ss_dssp HTTCCTT--CCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCC
T ss_pred HcCCCCC--CcCCCCCcHHHHHHHcCCHHHHHHHHhcC-CCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-CCCCC
Confidence 7744332 34455666666666666666666666665 55555666666666666666666666666666655 45556
Q ss_pred cCCChHHHHHHHcCCHHHHHHHHhc
Q 005862 283 EEGFYPFHLASANGRVRVMGEFFEK 307 (673)
Q Consensus 283 ~~g~tpLh~A~~~g~~~iv~~Ll~~ 307 (673)
..|.||+|+|+..++.+++++|.++
T Consensus 203 ~~g~t~l~~A~~~~~~~i~~lL~~~ 227 (231)
T 3aji_A 203 KEEKTPLQVAKGGLGLILKRLAEGE 227 (231)
T ss_dssp TTSCCHHHHSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHhhHHHHHHHHHccc
Confidence 6666666666666666666665553
No 23
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=5.1e-34 Score=282.52 Aligned_cols=226 Identities=23% Similarity=0.340 Sum_probs=135.5
Q ss_pred hhhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHHHHH
Q 005862 124 MEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYILE 203 (673)
Q Consensus 124 ~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~ 203 (673)
++.+|..|+||||+|+. .|+. +++++|+++|.+++ ..+..|.||||+|+..|+.+++++|++
T Consensus 4 ~~~~~~~g~t~L~~A~~-------~g~~----------~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 65 (237)
T 3b7b_A 4 FKMEHQNKRSPLHAAAE-------AGHV----------DICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKYLIK 65 (237)
T ss_dssp CCCSSCCSCCHHHHHHH-------HTCH----------HHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred cccccCCCCCHHHHHHH-------cCcH----------HHHHHHHHcCCCcC-ccCCCCCCHHHHHHHhCCHHHHHHHHh
Confidence 34566666666666666 6666 66666666666655 455566666666666666666666666
Q ss_pred hCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCccccccc
Q 005862 204 ALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNE 283 (673)
Q Consensus 204 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~ 283 (673)
.+.... ..+..|.||||.|+..|+.+++++|++.++..++..|..|.||||+|+..|+.+++++|++++++ ++..|.
T Consensus 66 ~g~~~~--~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~ 142 (237)
T 3b7b_A 66 AGALVD--PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDN 142 (237)
T ss_dssp TTCCCC--CCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCT
T ss_pred CCCCCC--CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCC
Confidence 543321 33455666666666666666666666665555555666666666666666666666666666555 455555
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHH
Q 005862 284 EGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHL 363 (673)
Q Consensus 284 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~ 363 (673)
.|.||||.|+..|+.+++++|+++| ..++..|..|+||||+|+..++.+++++|++.| ++++.+|.+|+||||+
T Consensus 143 ~g~t~L~~A~~~~~~~~~~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---ad~~~~d~~g~t~l~~ 216 (237)
T 3b7b_A 143 EENICLHWAAFSGCVDIAEILLAAK---CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRD---SDVTLKNKEGETPLQC 216 (237)
T ss_dssp TSCCHHHHHHHHCCHHHHHHHHTTT---CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT---CCTTCCCTTSCCHHHH
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHcC---CCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcC---CCCCccCCCCCCHHHH
Confidence 6666666666666666666666543 222445555666666666666666666666655 5556666666666666
Q ss_pred HHHhCCHHHHHHH
Q 005862 364 AALYGRHLAAAIL 376 (673)
Q Consensus 364 A~~~~~~~~v~~L 376 (673)
|+..++...+..+
T Consensus 217 A~~~~~~~~~~~l 229 (237)
T 3b7b_A 217 ASLNSQVWSALQM 229 (237)
T ss_dssp SCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666555444333
No 24
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=9.7e-35 Score=295.41 Aligned_cols=232 Identities=20% Similarity=0.193 Sum_probs=151.4
Q ss_pred cCCCCchHHHHHHHcCCHHHHHHHHHhCCCCC-cccccCCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHH
Q 005862 178 KNVDCKSPLYLAVESKNEDILKYILEALPVND-DCATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMH 256 (673)
Q Consensus 178 ~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh 256 (673)
.|.+|.||||+|+..|+.+++++|++.+.... ....+..|.||||+|+..|+.+++++|++++ .+++.+|..|.||||
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~tpL~ 83 (282)
T 1oy3_D 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG-AGVLVAERGGHTALH 83 (282)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCTTSCCHHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHH
Confidence 45555566666666666666666655533211 2244455666666666666666666666665 555556666666666
Q ss_pred HHHHCCCHHHHHHHHhhCCCc------------ccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCCcH
Q 005862 257 WAASVDHLEGVRFLYEINPDS------------VLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNI 324 (673)
Q Consensus 257 ~A~~~g~~~~v~~Ll~~~~~~------------~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~ 324 (673)
+|+..|+.+++++|++++++. .......+.++++.++..+.......++. .....++..+..|+||
T Consensus 84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~t~ 161 (282)
T 1oy3_D 84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDE--DWRLQLEAENYDGHTP 161 (282)
T ss_dssp HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CC--CGGGGTTCCCTTSCCH
T ss_pred HHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhh--hhhhcCCCcCCCCcCH
Confidence 666666666666666655431 12334567788888887766555544444 3334457789999999
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCcccccccCCC-CCcHHHHHHHhCCHHHHHHHHhcCCCCccccccCCCCHHHHHHhhcc
Q 005862 325 LHVAAKKGKSDTVRRILKASNIDTLINEMDDD-GNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIAKQKSA 403 (673)
Q Consensus 325 Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~-G~T~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~G~T~l~~a~~~~~ 403 (673)
||+|+.+|+.+++++|++.| ++++.++.. |+||||+|++.|+.+++++|+++| ++++.+|..|+||||+|+..++
T Consensus 162 L~~A~~~g~~~~v~~Ll~~g---~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~ 237 (282)
T 1oy3_D 162 LHVAVIHKDAEMVRLLRDAG---ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLRPN 237 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHT---CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTSSC
T ss_pred HHHHHHcCCHHHHHHHHHcC---CCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcC-CCCcccccCCCCHHHHHHHcCC
Confidence 99999999999999999999 889998854 999999999999999999999987 9999999999999999999999
Q ss_pred ccCccccCCcchh
Q 005862 404 EINPEFFGNDDDA 416 (673)
Q Consensus 404 ~~~~~~l~~~~~~ 416 (673)
.+++++|.+....
T Consensus 238 ~~~v~~Ll~~ga~ 250 (282)
T 1oy3_D 238 PILARLLRAHGAP 250 (282)
T ss_dssp HHHHHHHHHTTCC
T ss_pred cHHHHHHHHcCCC
Confidence 9999998765543
No 25
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.5e-34 Score=286.82 Aligned_cols=229 Identities=17% Similarity=0.183 Sum_probs=201.7
Q ss_pred ccCCCCchHHHHHHHcCCHHHHHHHHHh--CCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcH
Q 005862 177 LKNVDCKSPLYLAVESKNEDILKYILEA--LPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTP 254 (673)
Q Consensus 177 ~~~~~g~tpL~~A~~~g~~~iv~~Ll~~--~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~ 254 (673)
.+|.+|.||||+|+..|+.+++++|++. .........+..|.||||.|+..|+.+++++|++.+ .+++..|..|.||
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~ 82 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG-ASPMALDRHGQTA 82 (241)
T ss_dssp ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCH
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCH
Confidence 5788999999999999999999999983 112223366788999999999999999999999998 7888899999999
Q ss_pred HHHHHHCCCHHHHHHHHhhCCC---cccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCC-CCCCcHHHHHHh
Q 005862 255 MHWAASVDHLEGVRFLYEINPD---SVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLN-TKGQNILHVAAK 330 (673)
Q Consensus 255 Lh~A~~~g~~~~v~~Ll~~~~~---~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d-~~g~t~Lh~A~~ 330 (673)
||+|+..|+.+++++|++.++. ..+..|..|.||||.|+..|+.++++.|+++| .+ .+..+ ..|+||||+|+.
T Consensus 83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g--~~-~~~~~~~~g~t~L~~A~~ 159 (241)
T 1k1a_A 83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERG--AD-IDAVDIKSGRSPLIHAVE 159 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CC-TTCCCTTTCCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcC--CC-cccccccCCCcHHHHHHH
Confidence 9999999999999999999872 36788999999999999999999999999965 33 35555 789999999999
Q ss_pred cCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCccccccCCCCHHHHHHhhccccCcccc
Q 005862 331 KGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIAKQKSAEINPEFF 410 (673)
Q Consensus 331 ~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~G~T~l~~a~~~~~~~~~~~l 410 (673)
+++.+++++|++.| +++|.+|.+|+||||+|+..|+.+++++|+++| ++++.+|..|+||+|+|+..++.++++.+
T Consensus 160 ~~~~~~v~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~i~~~l 235 (241)
T 1k1a_A 160 NNSLSMVQLLLQHG---ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG-ADSSLKNCHNDTPLMVARSRRVIDILRGK 235 (241)
T ss_dssp TTCHHHHHHHHHTT---CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCTTTTCSSHHHHHHHTC-
T ss_pred cCCHHHHHHHHHcC---CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcC-CCCCCcCCCCCCHHHHHHhcCcHHHHhhh
Confidence 99999999999998 889999999999999999999999999999987 99999999999999999999998888776
Q ss_pred CCc
Q 005862 411 GND 413 (673)
Q Consensus 411 ~~~ 413 (673)
.+.
T Consensus 236 ~~~ 238 (241)
T 1k1a_A 236 ATR 238 (241)
T ss_dssp ---
T ss_pred ccC
Confidence 543
No 26
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.8e-33 Score=277.33 Aligned_cols=220 Identities=24% Similarity=0.198 Sum_probs=122.2
Q ss_pred CchHHHHHHHcCCHHHHHHHHHhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHC
Q 005862 182 CKSPLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASV 261 (673)
Q Consensus 182 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 261 (673)
+.+||+.|+..|+.+.+++|++..+.. ....+..|.||||.|+..|+.+++++|++.+ .+++..|..|+||||+|+..
T Consensus 6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~ 83 (231)
T 3aji_A 6 SNIMICNLAYSGKLDELKERILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQLG-VPVNDKDDAGWSPLHIAASA 83 (231)
T ss_dssp SSSHHHHHHHHTCHHHHHHHHHHCGGG-GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHH
T ss_pred ccchHHHHHHhCCHHHHHHHHHhchhh-hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhC-CCCCCcCCCCCCHHHHHHHc
Confidence 445555555555555555555542221 1233445555555555555555555555554 44555555555566655555
Q ss_pred CCHHHHHHHHhhCCCcccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHH
Q 005862 262 DHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRIL 341 (673)
Q Consensus 262 g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll 341 (673)
|+.+++++|++++++ ++..|..|.||||.|+..|+.+++++|+++|. ..+..+..|.||||+|+..|+.+++++|+
T Consensus 84 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 159 (231)
T 3aji_A 84 GXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA---NPDAKDHYDATAMHRAAAKGNLKMVHILL 159 (231)
T ss_dssp TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC---CCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 555555555555555 44555555566666666666666666655432 22444555566666666666666666666
Q ss_pred HhCCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCccccccCCCCHHHHHHhhccccCccccC
Q 005862 342 KASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIAKQKSAEINPEFFG 411 (673)
Q Consensus 342 ~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~G~T~l~~a~~~~~~~~~~~l~ 411 (673)
+.+ ++++.+|.+|+||||+|+..++.+++++|+++| ++++.+|..|+||+|+|...++.++.++|.
T Consensus 160 ~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~lL~ 225 (231)
T 3aji_A 160 FYK---ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG-ASIYIENKEEKTPLQVAKGGLGLILKRLAE 225 (231)
T ss_dssp HTT---CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHSCHHHHHHHHHHHH
T ss_pred hcC---CCccccCCCCCCHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHhhHHHHHHHHHc
Confidence 555 555555556666666666666666666665554 556666666666666665555555555443
No 27
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.9e-33 Score=276.51 Aligned_cols=212 Identities=18% Similarity=0.172 Sum_probs=144.0
Q ss_pred CCcHHHHHHh-CCccCHHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccchhhhhh
Q 005862 47 ENTLLHIAAA-GSIHDHENMATTLARKYPFLITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLME 125 (673)
Q Consensus 47 g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~~~ll~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~ 125 (673)
|+||||.|+. |+ .+++++|++++++..+..|..|.||||+|+..|+.+++++|+++|++.+ ++
T Consensus 2 g~t~L~~A~~~g~----~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~------------~~ 65 (228)
T 2dzn_A 2 SNYPLHQACMENE----FFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN------------LD 65 (228)
T ss_dssp -CCHHHHHHHTTC----HHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCC------------GG
T ss_pred CccHHHHHHHhCC----HHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc------------cc
Confidence 6788888888 88 8888888888887667788888888888888888888888888874421 23
Q ss_pred h-cCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcC--CCcccccCCCCchHHHHHHHcCCHHHHHHHH
Q 005862 126 M-KNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSED--PNASYLKNVDCKSPLYLAVESKNEDILKYIL 202 (673)
Q Consensus 126 ~-~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~--~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll 202 (673)
. +|..|+||||+|+. .++. +++++|++.+ ++++ ..+..|.||||+|+..|+.+++++|+
T Consensus 66 ~~~~~~g~t~L~~A~~-------~~~~----------~~~~~Ll~~g~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll 127 (228)
T 2dzn_A 66 DYPDDSGWTPFHIACS-------VGNL----------EVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFEVSQFLI 127 (228)
T ss_dssp GCCCTTSCCHHHHHHH-------HCCH----------HHHHHHHSSSSCCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred ccCCCCCCCHHHHHHH-------cCCH----------HHHHHHHhCCCCcccc-cCCcCCCCHHHHHHHcCCHhHHHHHH
Confidence 3 67778888888887 7777 8888888877 5544 45666777777777777777777777
Q ss_pred HhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHH-hhCCCccccc
Q 005862 203 EALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLY-EINPDSVLQR 281 (673)
Q Consensus 203 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll-~~~~~~~~~~ 281 (673)
+++.+. ...+..|.||||.|+..|+.+++++|++.++.+++.+|..|+||||+|+..|+.+++++|+ +.+++ ++.+
T Consensus 128 ~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~-~~~~ 204 (228)
T 2dzn_A 128 ENGASV--RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE-YDLV 204 (228)
T ss_dssp HTTCCS--CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC-SCCB
T ss_pred HcCCCc--cccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC-CCcc
Confidence 664332 2344556666666666666666666666655555555666666666666666666666666 55555 4555
Q ss_pred ccCCChHHHHHHHc
Q 005862 282 NEEGFYPFHLASAN 295 (673)
Q Consensus 282 d~~g~tpLh~A~~~ 295 (673)
|.+|.||+|+|+..
T Consensus 205 ~~~g~t~l~~A~~~ 218 (228)
T 2dzn_A 205 DNKGAKAEDVALNE 218 (228)
T ss_dssp CTTSCBGGGGCSST
T ss_pred CCCCCcHHHHHHHH
Confidence 55666666655443
No 28
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=3.1e-33 Score=274.97 Aligned_cols=212 Identities=20% Similarity=0.242 Sum_probs=100.4
Q ss_pred cCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCc
Q 005862 131 GNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYILEALPVNDD 210 (673)
Q Consensus 131 g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~ 210 (673)
|+||||+|+. .|+. ++++.|++.+++.....+..|.||||+|+..|+.+++++|++.+...+.
T Consensus 2 g~t~L~~A~~-------~g~~----------~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~ 64 (228)
T 2dzn_A 2 SNYPLHQACM-------ENEF----------FKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64 (228)
T ss_dssp -CCHHHHHHH-------TTCH----------HHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCG
T ss_pred CccHHHHHHH-------hCCH----------HHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccc
Confidence 4555555555 5555 5555555555555444555555555555555555555555555422222
Q ss_pred cc-ccCCCCcHHHHHHHhCcHHHHHHHHHcC-CcccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChH
Q 005862 211 CA-TKLEGKSPVKVAIELQKLGLLKMMHDKQ-PALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYP 288 (673)
Q Consensus 211 ~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tp 288 (673)
.. .+..|.||||.|+..|+.+++++|++.+ +.+++..|..|.||||+|+..|+.+++++|++++.+ ++.+|..|.||
T Consensus 65 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~ 143 (228)
T 2dzn_A 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIP 143 (228)
T ss_dssp GGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCH
T ss_pred cccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC-ccccCCCCCCH
Confidence 22 3344445555555544555555444443 233344444444444444444444444444444444 34444444444
Q ss_pred HHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHH-HhCCCcccccccCCCCCcHHHHHH
Q 005862 289 FHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRIL-KASNIDTLINEMDDDGNTPLHLAA 365 (673)
Q Consensus 289 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll-~~~~~~~~in~~d~~G~T~Lh~A~ 365 (673)
||+|+..|+.++++.|++ .++..++.+|..|+||||+|+..++.+++++|+ +.| ++++.+|.+|+||||+|+
T Consensus 144 L~~A~~~~~~~~v~~Ll~--~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~g---a~~~~~~~~g~t~l~~A~ 216 (228)
T 2dzn_A 144 LHRAASVGSLKLIELLCG--LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG---AEYDLVDNKGAKAEDVAL 216 (228)
T ss_dssp HHHHHHTTCHHHHHHHHT--TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---CCSCCBCTTSCBGGGGCS
T ss_pred HHHHHHcCCHHHHHHHHh--cCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC---CCCCccCCCCCcHHHHHH
Confidence 444444444444444444 222223334444444444444444444444444 333 344444444444444443
No 29
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=4e-34 Score=288.62 Aligned_cols=218 Identities=22% Similarity=0.260 Sum_probs=172.7
Q ss_pred ccCCCCchHHHHHHHcCCHHHHHHHHHhCCCCC------cccccCCCCcHHHHHHHhCcH-HHHHHHHHcCCcccccCCC
Q 005862 177 LKNVDCKSPLYLAVESKNEDILKYILEALPVND------DCATKLEGKSPVKVAIELQKL-GLLKMMHDKQPALLLIQDE 249 (673)
Q Consensus 177 ~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~------~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~~~~~~~~~d~ 249 (673)
.+|..+.+||+.|+..|+.++|++|++.+.... ....+..+.|||+.|+..++. .+++.|++.| .+++.+|.
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~G-advn~~d~ 84 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASG-LGVNVTSQ 84 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CC-CCTTCCCT
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCC-CCCCCcCC
Confidence 356667899999999999999999999854321 234567789999999988775 4788899988 88999999
Q ss_pred CCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHH
Q 005862 250 QMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAA 329 (673)
Q Consensus 250 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~ 329 (673)
+|+||||+|+..|+.+++++|++.+++ .+..+.+|.||+|.|+..++.++++.|+++|. .++.+|..|+||||+|+
T Consensus 85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~---~~n~~d~~g~TpL~~A~ 160 (269)
T 4b93_B 85 DGSSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNA---KPNKKDLSGNTPLIYAC 160 (269)
T ss_dssp TSCCHHHHHHHTTCTTHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC---CSCCCCTTCCCHHHHHH
T ss_pred CCCCHHHHHHHcCcHHHHHHHHhcCCC-cCccCCCCCCccccccccChHHHHHHHHHCCC---CCCCCCCCCCCHHHHHH
Confidence 999999999999999999999999998 78899999999999999999999999999663 34778999999999999
Q ss_pred hcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCccccccCCCCHHHHHHhhcc
Q 005862 330 KKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIAKQKSA 403 (673)
Q Consensus 330 ~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~G~T~l~~a~~~~~ 403 (673)
.+|+.+++++|++.| +++|.+|..|+||||+|+..|+.+++++|++.| +|++.+|.+|+||||+|++.++
T Consensus 161 ~~g~~~~v~~Ll~~g---advn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 161 SGGHHELVALLLQHG---ASINASNNKGNTALHEAVIEKHVFVVELLLLHG-ASVQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp HTTCGGGHHHHHHTT---CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCSGGGSCTTCH
T ss_pred HCCCHHHHHHHHHCC---CCCCccccCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHhCCc
Confidence 999999999999998 889999999999999999999999999999987 9999999999999999987654
No 30
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-33 Score=290.48 Aligned_cols=235 Identities=21% Similarity=0.252 Sum_probs=119.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccchhhhhhhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHH
Q 005862 83 KRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLMEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVS 162 (673)
Q Consensus 83 ~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~ 162 (673)
.|.||||.||..|+.++|++|+++|++ ++.+|..|.||||+|+. .|+. +
T Consensus 39 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~--------------~~~~~~~g~t~L~~A~~-------~g~~----------~ 87 (299)
T 1s70_B 39 DDGAVFLAACSSGDTEEVLRLLERGAD--------------INYANVDGLTALHQACI-------DDNV----------D 87 (299)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHCCC--------------TTCBCTTCCBHHHHHHH-------TTCH----------H
T ss_pred CCccHHHHHHHcCCHHHHHHHHHcCCC--------------CcccCCCCCCHHHHHHH-------cCCH----------H
Confidence 355677777777777777777766655 45566666677777766 6666 6
Q ss_pred HHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCCc
Q 005862 163 LARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPA 242 (673)
Q Consensus 163 iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~ 242 (673)
++++|++.|++++ ..|..|.||||+|+..|+.+++++|++++.... ..+..|.||||.|+..++.++++.++.....
T Consensus 88 ~v~~Ll~~ga~~~-~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~ 164 (299)
T 1s70_B 88 MVKFLVENGANIN-QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG--AVNSEGDTPLDIAEEEAMEELLQNEVNRQGV 164 (299)
T ss_dssp HHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHCCSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC--CcCCCCCCHHHHHHhcchHHHHHHHHhhcCC
Confidence 6676766666655 455566666666666666666666666533321 3344455555555555555555555444322
Q ss_pred ccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCC
Q 005862 243 LLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQ 322 (673)
Q Consensus 243 ~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~ 322 (673)
+++..+..+.++++ ..+..++..+.......+..|.||||.|+..|+.+++++|+++| ..++.+|..|+
T Consensus 165 ~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---~d~~~~d~~g~ 233 (299)
T 1s70_B 165 DIEAARKEEERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR---YDVNIKDYDGW 233 (299)
T ss_dssp CHHHHHHHHHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT---CCTTCCCTTCC
T ss_pred CchhhhhhhhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcC---CCCCCcCCCCC
Confidence 22222211122221 11222333333323333444444444444444444444444433 11233444444
Q ss_pred cHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHH
Q 005862 323 NILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAA 365 (673)
Q Consensus 323 t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~ 365 (673)
||||+|+.+|+.+++++|++.| ++++.+|..|+||||+|+
T Consensus 234 tpL~~A~~~~~~~~v~~Ll~~g---ad~~~~d~~g~t~l~~A~ 273 (299)
T 1s70_B 234 TPLHAAAHWGKEEACRILVENL---CDMEAVNKVGQTAFDVAD 273 (299)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCTTTSCC
T ss_pred cHHHHHHhcCCHHHHHHHHHcC---CCCCCcCCCCCCHHHHHH
Confidence 4444444444444444444444 444444444444444443
No 31
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.3e-34 Score=287.19 Aligned_cols=215 Identities=20% Similarity=0.181 Sum_probs=121.6
Q ss_pred cCCCCCcHHHHHHh-CCccCHHHHHHHHHHhCCcc-------ccccCCCCCcHHHHHHHcCCHH-HHHHHHhchhccCCC
Q 005862 43 TSPSENTLLHIAAA-GSIHDHENMATTLARKYPFL-------ITMQNSKRDTPLHVAARAGMLQ-TAKILVDCAKRSGMT 113 (673)
Q Consensus 43 ~~~~g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~~~l-------l~~~~~~g~TpLh~Aa~~g~~~-iv~~Ll~~ga~~~~~ 113 (673)
+|..+.++|+.||. |+ .++|++|++.++.. ++..+..|.||||.|+..++.+ ++++|++.|++
T Consensus 7 kd~~~~~~L~~A~~~G~----~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gad---- 78 (269)
T 4b93_B 7 KDYREVEKLLRAVADGD----LEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLG---- 78 (269)
T ss_dssp CCCHHHHHHHHHHHTTC----HHHHHHHHTCC----------------------------------------CCCC----
T ss_pred cCccchhHHHHHHHcCC----HHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCC----
Confidence 45556677777777 77 77777777766532 3455566777777777666553 66777777666
Q ss_pred CCcccchhhhhhhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHcC
Q 005862 114 SSSQIDVKGLMEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESK 193 (673)
Q Consensus 114 ~~~~~~~~~~~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g 193 (673)
++.+|.+|+||||+|+. .|+. +++++|++.+++.. ..+..|.||++.|+..+
T Consensus 79 ----------vn~~d~~G~TpLh~A~~-------~g~~----------~~v~~Ll~~~a~~~-~~~~~g~t~l~~a~~~~ 130 (269)
T 4b93_B 79 ----------VNVTSQDGSSPLHVAAL-------HGRA----------DLIPLLLKHGANAG-ARNADQAVPLHLACQQG 130 (269)
T ss_dssp ----------TTCCCTTSCCHHHHHHH-------TTCT----------THHHHHHHTTCCTT-CCCTTCCCHHHHHHHHT
T ss_pred ----------CCCcCCCCCCHHHHHHH-------cCcH----------HHHHHHHhcCCCcC-ccCCCCCCccccccccC
Confidence 55567777777777777 7777 77777777777665 55666777777777777
Q ss_pred CHHHHHHHHHhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHHhh
Q 005862 194 NEDILKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEI 273 (673)
Q Consensus 194 ~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ 273 (673)
+.+++++|++.+.+. +..+..|.||||.|+..|+.+++++|++.+ .+++.+|..|.||||+|+..|+.+++++|+++
T Consensus 131 ~~~~~~~Ll~~g~~~--n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g-advn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~ 207 (269)
T 4b93_B 131 HFQVVKCLLDSNAKP--NKKDLSGNTPLIYACSGGHHELVALLLQHG-ASINASNNKGNTALHEAVIEKHVFVVELLLLH 207 (269)
T ss_dssp CHHHHHHHHHTTCCS--CCCCTTCCCHHHHHHHTTCGGGHHHHHHTT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT
T ss_pred hHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHCCCHHHHHHHHHCC-CCCCccccCCCcHHHHHHHcCCHHHHHHHHHC
Confidence 777777777664333 244555666666666666666666666665 55666666666666666666666666666666
Q ss_pred CCCcccccccCCChHHHHHHHcCC
Q 005862 274 NPDSVLQRNEEGFYPFHLASANGR 297 (673)
Q Consensus 274 ~~~~~~~~d~~g~tpLh~A~~~g~ 297 (673)
|++ ++.+|.+|+||||+|+++|+
T Consensus 208 Gad-~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 208 GAS-VQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp TCC-SCCCCTTSCCSGGGSCTTCH
T ss_pred CCC-CCCcCCCCCCHHHHHHhCCc
Confidence 665 55666666666666665553
No 32
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=3.2e-32 Score=269.56 Aligned_cols=232 Identities=17% Similarity=0.138 Sum_probs=203.9
Q ss_pred hhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHHHHHh
Q 005862 125 EMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYILEA 204 (673)
Q Consensus 125 ~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~ 204 (673)
+..|..|.|+||.|+. .|+. ++++.|++.+.++. ..+..|.||||+|+..|+.+++++|++.
T Consensus 3 ~~~d~~~~~~l~~A~~-------~g~~----------~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQ-------YGIY----------ERCRELVEAGYDVR-QPDKENVTLLHWAAINNRIDLVKYYISK 64 (240)
T ss_dssp CCCSCGGGCCHHHHHH-------TTCH----------HHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred cccccccchHHHHHHH-------cCCh----------HHHHHHHHcCCCcC-CCCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 3468899999999999 9999 99999999998877 6788999999999999999999999998
Q ss_pred CCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccC
Q 005862 205 LPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEE 284 (673)
Q Consensus 205 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~ 284 (673)
+..... ..+..|.||||.|+..|+.+++++|++.+ .+++..|..|.||||+|+..|+.+++++|++++.+ ++..+..
T Consensus 65 ~~~~~~-~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~ 141 (240)
T 3eu9_A 65 GAIVDQ-LGGDLNSTPLHWATRQGHLSMVVQLMKYG-ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQN 141 (240)
T ss_dssp TCCTTC-CBTTTTBCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred CCcchh-hcCCcCCChhHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC-ccccCCC
Confidence 655432 44556899999999999999999999998 77888899999999999999999999999999988 7888999
Q ss_pred CChHHHHHHHcCC-HHHHHHHHhccCCCCCcccCCC-CCCcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHH
Q 005862 285 GFYPFHLASANGR-VRVMGEFFEKENMPPPTELLNT-KGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLH 362 (673)
Q Consensus 285 g~tpLh~A~~~g~-~~iv~~Ll~~~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh 362 (673)
|.||||.|+..++ .++++.|++.+ .+ .+..+. .|+||||+|+.+++.+++++|++.| ++++.+|.+|+||||
T Consensus 142 g~t~l~~a~~~~~~~~~~~~L~~~~--~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~~~~g~t~l~ 215 (240)
T 3eu9_A 142 GMTPLMWAAYRTHSVDPTRLLLTFN--VS-VNLGDKYHKNTALHWAVLAGNTTVISLLLEAG---ANVDAQNIKGESALD 215 (240)
T ss_dssp SCCHHHHHHHHCCSSTTHHHHHHTT--CC-TTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT---CCTTCBCTTSCBHHH
T ss_pred CCcHHHHHHHhCChHHHHHHHHhcC--CC-cchhhccCCCcHHHHHHHcCCHHHHHHHHHcC---CCCCCcCCCCCCHHH
Confidence 9999999997666 88999999955 33 355555 8999999999999999999999998 889999999999999
Q ss_pred HHHHhCCHHHHHHHHhcCCCCc
Q 005862 363 LAALYGRHLAAAILVWDGRANQ 384 (673)
Q Consensus 363 ~A~~~~~~~~v~~Ll~~~~~~~ 384 (673)
+|++.|+.+++++|++.+ .+.
T Consensus 216 ~A~~~~~~~~v~~L~~~~-~~~ 236 (240)
T 3eu9_A 216 LAKQRKNVWMINHLQEAR-QAK 236 (240)
T ss_dssp HHHHTTCHHHHHHHHHHC----
T ss_pred HHHHcCcHHHHHHHHHhh-hcc
Confidence 999999999999999887 443
No 33
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=7e-34 Score=291.96 Aligned_cols=272 Identities=21% Similarity=0.195 Sum_probs=224.1
Q ss_pred HHHHcCCHHHHHHHHhchhccCCCCCcccchhhhhhhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHh
Q 005862 90 VAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLMEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVS 169 (673)
Q Consensus 90 ~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~ 169 (673)
.++..++.+.++.++....+..... ........+..|.||||.|+. .|+. ++++.|++
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~t~l~~A~~-------~g~~----------~~v~~Ll~ 61 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPV-----VKRKKTKVKFDDGAVFLAACS-------SGDT----------EEVLRLLE 61 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSC-----CCCSCCCCEECHHHHHHHHHH-------HTCH----------HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcccccccccc-----ccCcccccccCCccHHHHHHH-------cCCH----------HHHHHHHH
Confidence 4677778888888887654432211 011122345678999999999 9999 99999999
Q ss_pred cCCCcccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCC
Q 005862 170 EDPNASYLKNVDCKSPLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDE 249 (673)
Q Consensus 170 ~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~ 249 (673)
+|++++ ..|..|.||||+|+..|+.+++++|++++.+. +..+..|.||||.|+..|+.+++++|++++ .+++..|.
T Consensus 62 ~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~--~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g-~~~~~~~~ 137 (299)
T 1s70_B 62 RGADIN-YANVDGLTALHQACIDDNVDMVKFLVENGANI--NQPDNEGWIPLHAAASCGYLDIAEYLISQG-AHVGAVNS 137 (299)
T ss_dssp HCCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCT
T ss_pred cCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHhCC-CCCCCcCC
Confidence 999987 68889999999999999999999999986554 356778999999999999999999999998 77888999
Q ss_pred CCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHH
Q 005862 250 QMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAA 329 (673)
Q Consensus 250 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~ 329 (673)
.|.||||+|+..++.++++.++.......+..+..+.++++. .+..++..+ .......+..|.||||+|+
T Consensus 138 ~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~--~~~~~~~~~~g~t~L~~A~ 207 (299)
T 1s70_B 138 EGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLR--------DARQWLNSG--HINDVRHAKSGGTALHVAA 207 (299)
T ss_dssp TSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--------HHHHHHHHT--CCCCCCCTTTCCCHHHHHH
T ss_pred CCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHH--------HHHHHHhcc--CcchhhhcCCCCCHHHHHH
Confidence 999999999999999999998876544344444444444443 344555533 2333456788999999999
Q ss_pred hcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCccccccCCCCHHHHHHhh
Q 005862 330 KKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIAKQK 401 (673)
Q Consensus 330 ~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~G~T~l~~a~~~ 401 (673)
.+|+.+++++|++.| +++|.+|.+|+||||+|+..|+.+++++|+++| ++++.+|..|+||+|+|.+.
T Consensus 208 ~~g~~~~v~~Ll~~g---~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~~ 275 (299)
T 1s70_B 208 AKGYTEVLKLLIQAR---YDVNIKDYDGWTPLHAAAHWGKEEACRILVENL-CDMEAVNKVGQTAFDVADED 275 (299)
T ss_dssp HHTCHHHHHHHHTTT---CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTTTSCCSG
T ss_pred HCCcHHHHHHHHHcC---CCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHH
Confidence 999999999999998 889999999999999999999999999999987 99999999999999999654
No 34
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=4.8e-32 Score=268.31 Aligned_cols=224 Identities=18% Similarity=0.157 Sum_probs=116.6
Q ss_pred cCCCCCcHHHHHHh-CCccCHHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccchh
Q 005862 43 TSPSENTLLHIAAA-GSIHDHENMATTLARKYPFLITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVK 121 (673)
Q Consensus 43 ~~~~g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~~~ll~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~ 121 (673)
.|+.|.|+||.|+. |+ .+++++|++.+.+ ++.++..|.||||+|+..|+.++|++|+++|++.
T Consensus 5 ~d~~~~~~l~~A~~~g~----~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~----------- 68 (240)
T 3eu9_A 5 IDDYSTWDIVKATQYGI----YERCRELVEAGYD-VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIV----------- 68 (240)
T ss_dssp CSCGGGCCHHHHHHTTC----HHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-----------
T ss_pred cccccchHHHHHHHcCC----hHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcc-----------
Confidence 45566666666666 66 6666666666655 6666666666666666666666666666665542
Q ss_pred hhhhhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 005862 122 GLMEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYI 201 (673)
Q Consensus 122 ~~~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~L 201 (673)
....+..|.||||+|+. .++. +++++|++.++++. ..+..|.||||+|+..|+.+++++|
T Consensus 69 --~~~~~~~~~t~L~~A~~-------~~~~----------~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~L 128 (240)
T 3eu9_A 69 --DQLGGDLNSTPLHWATR-------QGHL----------SMVVQLMKYGADPS-LIDGEGCSCIHLAAQFGHTSIVAYL 128 (240)
T ss_dssp --TCCBTTTTBCHHHHHHH-------HTCH----------HHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred --hhhcCCcCCChhHHHHH-------cCCH----------HHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCHHHHHHHH
Confidence 11233445666666666 5555 66666666655554 3455555555555555555555555
Q ss_pred HHhCCCCCcccccCCCCcHHHHHHHhCc-HHHHHHHHHcCCcccccCCC-CCCcHHHHHHHCCCHHHHHHHHhhCCCccc
Q 005862 202 LEALPVNDDCATKLEGKSPVKVAIELQK-LGLLKMMHDKQPALLLIQDE-QMNTPMHWAASVDHLEGVRFLYEINPDSVL 279 (673)
Q Consensus 202 l~~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~ 279 (673)
++.+... ...+..|.||||.|+..++ .+++++|++.+ .+++..+. .|.||||+|+..|+.+++++|++++++ ++
T Consensus 129 l~~~~~~--~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~ 204 (240)
T 3eu9_A 129 IAKGQDV--DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFN-VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN-VD 204 (240)
T ss_dssp HHTTCCT--TCCCTTSCCHHHHHHHHCCSSTTHHHHHHTT-CCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TT
T ss_pred HhcCCCc--cccCCCCCcHHHHHHHhCChHHHHHHHHhcC-CCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCC-CC
Confidence 5553222 1233444444444443333 44444444444 33333333 444444444444444444444444444 33
Q ss_pred ccccCCChHHHHHHHcCCHHHHHHHHh
Q 005862 280 QRNEEGFYPFHLASANGRVRVMGEFFE 306 (673)
Q Consensus 280 ~~d~~g~tpLh~A~~~g~~~iv~~Ll~ 306 (673)
..|..|.||||+|++.|+.+++++|++
T Consensus 205 ~~~~~g~t~l~~A~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 205 AQNIKGESALDLAKQRKNVWMINHLQE 231 (240)
T ss_dssp CBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 444444444444444444444444444
No 35
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=3.7e-32 Score=266.39 Aligned_cols=212 Identities=17% Similarity=0.179 Sum_probs=195.6
Q ss_pred HHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCC
Q 005862 162 SLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQP 241 (673)
Q Consensus 162 ~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 241 (673)
+++++|+++++++....|..|.||||+|+..|+.+++++|++.+... ...+..|.||||.|+..++.+++++|++.++
T Consensus 5 ~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 82 (223)
T 2f8y_A 5 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA--NIQDNMGRTPLHAAVSADAQGVFQILIRNRA 82 (223)
T ss_dssp CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHBTT
T ss_pred HHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 78899999999998777899999999999999999999999986544 3567889999999999999999999999997
Q ss_pred cccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCC
Q 005862 242 ALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKG 321 (673)
Q Consensus 242 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g 321 (673)
..++..+..|.||||+|+..|+.+++++|++++++ ++..|..|.||||+|+..|+.+++++|+++| ..++..|..|
T Consensus 83 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~~~~g 158 (223)
T 2f8y_A 83 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNG---ANKDMQNNRE 158 (223)
T ss_dssp SCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTC
T ss_pred CCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC-CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcC---CCCCCcCCCC
Confidence 78899999999999999999999999999999988 7889999999999999999999999999966 3347788999
Q ss_pred CcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCC
Q 005862 322 QNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRAN 383 (673)
Q Consensus 322 ~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~~~~ 383 (673)
+||||+|+.+++.+++++|++.+ ++++.+|..|+||||+|++.++.+++++|++++ +.
T Consensus 159 ~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g-~~ 216 (223)
T 2f8y_A 159 ETPLFLAAREGSYETAKVLLDHF---ANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN-LV 216 (223)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTT---CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CS
T ss_pred cCHHHHHHHcCCHHHHHHHHHcC---CCCccccccCCCHHHHHHHhcchHHHHHHHHcC-CC
Confidence 99999999999999999999998 889999999999999999999999999999887 44
No 36
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=5.5e-34 Score=296.60 Aligned_cols=286 Identities=13% Similarity=0.084 Sum_probs=182.1
Q ss_pred HHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccchhh---hhhhcCCccCcHHHHHH
Q 005862 63 ENMATTLARKYPFLITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKG---LMEMKNVRGNTALHEAL 139 (673)
Q Consensus 63 ~e~v~~Ll~~~~~ll~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~---~~~~~d~~g~T~Lh~A~ 139 (673)
.+++++|+++|.+ ++..+..|.|+++ |+.++|+.|+++|++++........... .-..+.....+.+|.|+
T Consensus 32 ~dlv~~ll~~ga~-i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~ 105 (327)
T 1sw6_A 32 HDLTSDFLSSPLK-IMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSF 105 (327)
T ss_dssp TTCCCSTTTSSCC-CEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CH
T ss_pred CchHHHHhhCCcc-cccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHH
Confidence 5679999999988 8999999999988 9999999999999884321100000000 00001111122235555
Q ss_pred HHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCcccccCCCCc
Q 005862 140 NALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYILEALPVNDDCATKLEGKS 219 (673)
Q Consensus 140 ~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t 219 (673)
. .+.. ++++.|++.+.+++...|..|.||||+|+..|+.+++++|++++.+.. ..+..|.|
T Consensus 106 ~-------~~~~----------~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n--~~d~~g~T 166 (327)
T 1sw6_A 106 D-------SLLQ----------EVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL--YGDNMGES 166 (327)
T ss_dssp H-------HHHH----------HHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--BCCTTCCC
T ss_pred H-------hhHH----------HHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCC
Confidence 4 4444 777778877777774367778888888888888888888887754432 55667777
Q ss_pred HHHHHHHhCc---HHHHHHHHHcCCcccccCCCCCCcHHHHHHH----CCCHHHHHHHHhhCCCcccccccCCChHHHHH
Q 005862 220 PVKVAIELQK---LGLLKMMHDKQPALLLIQDEQMNTPMHWAAS----VDHLEGVRFLYEINPDSVLQRNEEGFYPFHLA 292 (673)
Q Consensus 220 ~L~~A~~~~~---~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~----~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A 292 (673)
|||.|+..|+ .++++.|++.+...++.+|..|+||||+|+. .|+.+++++|++.+........ +..
T Consensus 167 pLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~--~~~----- 239 (327)
T 1sw6_A 167 CLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ--NRP----- 239 (327)
T ss_dssp HHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGG--GCC-----
T ss_pred HHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhccc--chH-----
Confidence 7777777776 5667777776655677777777777777777 6777777777766432110000 000
Q ss_pred HHcCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHH
Q 005862 293 SANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLA 372 (673)
Q Consensus 293 ~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~ 372 (673)
+...+...+ ..++..+..|+||||.|+. +++|++.+ +|.+|.+|+||||+|++.|+.++
T Consensus 240 -------i~~~~~~~g---~~~~~~~~~g~t~L~~a~~------~~~Ll~~~-----~n~~d~~G~TpLh~A~~~g~~~~ 298 (327)
T 1sw6_A 240 -------IQSGTNEKE---SKPNDKNGERKDSILENLD------LKWIIANM-----LNAQDSNGDTCLNIAARLGNISI 298 (327)
T ss_dssp -------EEEC-------------------CHHHHHCS------HHHHHHHT-----TTCCCTTSCCHHHHHHHHCCHHH
T ss_pred -------HHhhhhccc---CCcccccccCCChhHHHHH------HHHHHHhC-----CCCCCCCCCCHHHHHHHcCCHHH
Confidence 000011112 3346678889999999885 88888874 78889999999999999999999
Q ss_pred HHHHHhcCCCCccccccCCCCHHHHHHhhc
Q 005862 373 AAILVWDGRANQDIINFHGQTAYSIAKQKS 402 (673)
Q Consensus 373 v~~Ll~~~~~~~~~~n~~G~T~l~~a~~~~ 402 (673)
+++|+++| ++++.+|.+|+||||+|++.|
T Consensus 299 v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 299 VDALLDYG-ADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHHHHHTT-CCTTCCCTTSCCGGGGTCC--
T ss_pred HHHHHHcC-CCCcccCCCCCCHHHHHHhcC
Confidence 99999886 999999999999999987653
No 37
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=4.2e-32 Score=266.04 Aligned_cols=211 Identities=18% Similarity=0.202 Sum_probs=148.3
Q ss_pred HHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccchhhhhhhcCCccCcHHHHHHHHH
Q 005862 63 ENMATTLARKYPFLITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLMEMKNVRGNTALHEALNAL 142 (673)
Q Consensus 63 ~e~v~~Ll~~~~~ll~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~d~~g~T~Lh~A~~~l 142 (673)
.+++++|++++++..+..|..|.||||+|+..|+.++|++|+++|++ ++.+|..|+||||+|+.
T Consensus 4 ~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--------------~~~~~~~g~t~L~~A~~-- 67 (223)
T 2f8y_A 4 PAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD--------------ANIQDNMGRTPLHAAVS-- 67 (223)
T ss_dssp -CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC--------------TTCCCTTSCCHHHHHHH--
T ss_pred HHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCC--------------CCCcCCCCCCHHHHHHH--
Confidence 77888888888885556688889999999999999999999988776 55678888888888888
Q ss_pred HhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCcccccCCCCcHHH
Q 005862 143 LDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVK 222 (673)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~ 222 (673)
.++. +++++|++.++......+..|.||||+|+..|+.+++++|++.+.... ..+..|.||||
T Consensus 68 -----~~~~----------~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~ 130 (223)
T 2f8y_A 68 -----ADAQ----------GVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN--AVDDLGKSALH 130 (223)
T ss_dssp -----TTCH----------HHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CBCTTSCBHHH
T ss_pred -----cCCH----------HHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCc--CcCCCCCcHHH
Confidence 8888 888888888774444667777788888888777777777777644322 34455666666
Q ss_pred HHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHHcCCHHHHH
Q 005862 223 VAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMG 302 (673)
Q Consensus 223 ~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~ 302 (673)
.|+..++.+++++|++.+ .+++.+|..|.||||+|+..|+.+++++|++++++ .+.+|..|.||+|+|++.|+.++++
T Consensus 131 ~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~ 208 (223)
T 2f8y_A 131 WAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVR 208 (223)
T ss_dssp HHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHcC-CCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CccccccCCCHHHHHHHhcchHHHH
Confidence 666666666666666665 45555666666666666666666666666666655 4555666666666666666666666
Q ss_pred HHHhcc
Q 005862 303 EFFEKE 308 (673)
Q Consensus 303 ~Ll~~~ 308 (673)
+|+++|
T Consensus 209 ~L~~~g 214 (223)
T 2f8y_A 209 LLDEYN 214 (223)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 666644
No 38
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=3.1e-32 Score=277.62 Aligned_cols=236 Identities=14% Similarity=0.111 Sum_probs=156.9
Q ss_pred HHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccchhhhhhhcCCccCcHHHHHHHHH
Q 005862 63 ENMATTLARKYPFLITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLMEMKNVRGNTALHEALNAL 142 (673)
Q Consensus 63 ~e~v~~Ll~~~~~ll~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~d~~g~T~Lh~A~~~l 142 (673)
.++.++|.+.+ ++.+|..|.||||+|+..|+.++|++|+++|++ ++.+ +|+||||+|+.
T Consensus 13 ~~v~~lL~~~~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--------------~~~~--~g~t~L~~A~~-- 71 (285)
T 3kea_A 13 KQLKSFLSSKD---TFKADVHGHSASYYAIADNNVRLVCTLLNAGAL--------------KNLL--ENEFPLHQAAT-- 71 (285)
T ss_dssp HHHHHHHHSTT---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG--------------GSCC--TTCCHHHHHTT--
T ss_pred HHHHHHHHhCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC--------------CCCC--CCCCHHHHHHH--
Confidence 45555555442 678888999999999999999999999998877 3333 37888888888
Q ss_pred HhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCcccccCCCCcHHH
Q 005862 143 LDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVK 222 (673)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~ 222 (673)
.++. +++++|+++|++++ ..|..|.||||+|+..|+.+++++|++++
T Consensus 72 -----~g~~----------~~v~~Ll~~ga~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g----------------- 118 (285)
T 3kea_A 72 -----LEDT----------KIVKILLFSGLDDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKN----------------- 118 (285)
T ss_dssp -----SSSC----------HHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHC-----------------
T ss_pred -----cCCH----------HHHHHHHHCCCCCC-CcCCCCCcHHHHHHHcCCHHHHHHHHhcC-----------------
Confidence 8888 88888888888776 46666777777777666666666666652
Q ss_pred HHHHhCcHHHHHHHHHcCCcccccCCCCC-CcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHHcCCHHHH
Q 005862 223 VAIELQKLGLLKMMHDKQPALLLIQDEQM-NTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVM 301 (673)
Q Consensus 223 ~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g-~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv 301 (673)
.+++.+|..| .||||+|+..|+.+++++|++++++... ...|.||||.|+..|+.+++
T Consensus 119 -------------------a~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~g~~~~v 177 (285)
T 3kea_A 119 -------------------WRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDMM 177 (285)
T ss_dssp -------------------GGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--CSTHHHHHHHHHHTTCHHHH
T ss_pred -------------------CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--ccCCccHHHHHHHcChHHHH
Confidence 3344455555 5666666666666666666666554211 12566666666666666666
Q ss_pred HHHHhccCCCCCcccCCCCCCcH-HHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhcC
Q 005862 302 GEFFEKENMPPPTELLNTKGQNI-LHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380 (673)
Q Consensus 302 ~~Ll~~~~~~~~~~~~d~~g~t~-Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~ 380 (673)
++|+++|. .++.+|..|+|| ||+|+.+++.+++++|++.| ++++.+|. .|+..|+.+++++|+++|
T Consensus 178 ~~Ll~~ga---d~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~g---ad~~~~~~-------~a~~~~~~~iv~~Ll~~g 244 (285)
T 3kea_A 178 ILLLDYMT---STNTNNSLLFIPDIKLAIDNKDIEMLQALFKYD---INIYSANL-------ENVLLDDAEIAKMIIEKH 244 (285)
T ss_dssp HHHHHHHH---HTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSC---BCSTTTTG-------GGGTTTCHHHHHHHHHHH
T ss_pred HHHHHcCC---CCCcccCCCCChHHHHHHHcCCHHHHHHHHHcC---CCCCCCCh-------hhhhcCCHHHHHHHHHcC
Confidence 66666552 235556666665 66666666666666666666 55666552 445566777777777665
Q ss_pred CCCcccc
Q 005862 381 RANQDII 387 (673)
Q Consensus 381 ~~~~~~~ 387 (673)
++++..
T Consensus 245 -~~~~~~ 250 (285)
T 3kea_A 245 -VEYKSD 250 (285)
T ss_dssp -HHHTTC
T ss_pred -CCCCCc
Confidence 555443
No 39
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.98 E-value=8.3e-32 Score=274.48 Aligned_cols=229 Identities=18% Similarity=0.147 Sum_probs=199.8
Q ss_pred HHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCC
Q 005862 162 SLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQP 241 (673)
Q Consensus 162 ~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 241 (673)
++.++|.+.+. + .+|..|.||||+|+..|+.+++++|++.+..... .+|.||||.|+..|+.+++++|++.+
T Consensus 14 ~v~~lL~~~~~--~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----~~g~t~L~~A~~~g~~~~v~~Ll~~g- 85 (285)
T 3kea_A 14 QLKSFLSSKDT--F-KADVHGHSASYYAIADNNVRLVCTLLNAGALKNL----LENEFPLHQAATLEDTKIVKILLFSG- 85 (285)
T ss_dssp HHHHHHHSTTT--T-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSC----CTTCCHHHHHTTSSSCHHHHHHHHTT-
T ss_pred HHHHHHHhCCC--C-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC----CCCCCHHHHHHHcCCHHHHHHHHHCC-
Confidence 66667766543 2 6788999999999999999999999998554332 25899999999999999999999998
Q ss_pred cccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCC-ChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCC-
Q 005862 242 ALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEG-FYPFHLASANGRVRVMGEFFEKENMPPPTELLNT- 319 (673)
Q Consensus 242 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g-~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~- 319 (673)
.+++.+|..|+||||+|+..|+.+++++|++++++ ++..|..| .||||.|+..|+.+++++|+++| ++. .+.
T Consensus 86 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g--~~~---~~~~ 159 (285)
T 3kea_A 86 LDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI--PST---FDLA 159 (285)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTS--CTT---CCCS
T ss_pred CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCC--Ccc---cccc
Confidence 77888999999999999999999999999999988 78899999 89999999999999999999965 322 233
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcH-HHHHHHhCCHHHHHHHHhcCCCCccccccCCCCHHHHH
Q 005862 320 KGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTP-LHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIA 398 (673)
Q Consensus 320 ~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~-Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~G~T~l~~a 398 (673)
.|+||||+|+.+|+.+++++|++.| +++|.+|..|+|| ||+|+..|+.+++++|+++| ++++.+|. .+
T Consensus 160 ~g~t~L~~A~~~g~~~~v~~Ll~~g---ad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~g-ad~~~~~~-------~a 228 (285)
T 3kea_A 160 ILLSCIHITIKNGHVDMMILLLDYM---TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYD-INIYSANL-------EN 228 (285)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHH---HHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSC-BCSTTTTG-------GG
T ss_pred CCccHHHHHHHcChHHHHHHHHHcC---CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCCCCCh-------hh
Confidence 8999999999999999999999998 8999999999998 99999999999999999887 99999985 34
Q ss_pred HhhccccCccccCCcch
Q 005862 399 KQKSAEINPEFFGNDDD 415 (673)
Q Consensus 399 ~~~~~~~~~~~l~~~~~ 415 (673)
+..++.+++++|.+...
T Consensus 229 ~~~~~~~iv~~Ll~~g~ 245 (285)
T 3kea_A 229 VLLDDAEIAKMIIEKHV 245 (285)
T ss_dssp GTTTCHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHcCC
Confidence 66778888888876543
No 40
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=3.4e-33 Score=290.60 Aligned_cols=261 Identities=13% Similarity=0.091 Sum_probs=186.4
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccchhhhhhhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHH
Q 005862 82 SKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLMEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLV 161 (673)
Q Consensus 82 ~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~ 161 (673)
..+.+|+| ..+.++|++|+++|++ ++.+|..|.|+++ |+.
T Consensus 21 ~~~~~~~~----~~~~dlv~~ll~~ga~--------------i~~~~~~g~~~~~------------g~~---------- 60 (327)
T 1sw6_A 21 DRTAGPII----TFTHDLTSDFLSSPLK--------------IMKALPSPVVNDN------------EQK---------- 60 (327)
T ss_dssp ----CCEE----ECCTTCCCSTTTSSCC--------------CEECBCCCCCCCH------------HHH----------
T ss_pred cccccchh----hhcCchHHHHhhCCcc--------------cccCCCCCCcccC------------chh----------
Confidence 44556666 4567889999999988 6778899999975 566
Q ss_pred HHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCC
Q 005862 162 SLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQP 241 (673)
Q Consensus 162 ~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 241 (673)
++++.|+++|.+.. .++++.|+..... +. .........+.+|.|+..+..++++.|++.+
T Consensus 61 ~~v~~Ll~~g~~~~-------~~~~~~a~~~~~~----------~~--~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g- 120 (327)
T 1sw6_A 61 MKLEAFLQRLLFPE-------IQEMPTSLNNDSS----------NR--NSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQ- 120 (327)
T ss_dssp HHHHHHHHHHHC--------------------------------------------------CHHHHHHHHHHHCTTSC-
T ss_pred HHHHHHHHhccCCc-------cccchHhhhcccc----------cc--cccccCCccchhHHHHHhhHHHHHHHHHhcC-
Confidence 99999999987743 3567777653210 00 0011122344568888888889999999888
Q ss_pred ccccc-CCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHHcCC---HHHHHHHHhccCCCCCcccC
Q 005862 242 ALLLI-QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGR---VRVMGEFFEKENMPPPTELL 317 (673)
Q Consensus 242 ~~~~~-~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~---~~iv~~Ll~~~~~~~~~~~~ 317 (673)
.+++. +|..|+||||+|+..|+.+++++|++++++ ++.+|.+|+||||+|+..|+ .++++.|++.+ ...++.+
T Consensus 121 ~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad-~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~--~~~~~~~ 197 (327)
T 1sw6_A 121 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL--YPCLILE 197 (327)
T ss_dssp CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHH--GGGGGEE
T ss_pred CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhh--hccccCC
Confidence 78888 899999999999999999999999999998 78999999999999999998 67777777743 2346888
Q ss_pred CCCCCcHHHHHHh----cCCHHHHHHHHHhCC-----------------CcccccccCCCCCcHHHHHHHhCCHHHHHHH
Q 005862 318 NTKGQNILHVAAK----KGKSDTVRRILKASN-----------------IDTLINEMDDDGNTPLHLAALYGRHLAAAIL 376 (673)
Q Consensus 318 d~~g~t~Lh~A~~----~~~~~iv~~Ll~~~~-----------------~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~L 376 (673)
|..|+||||+|+. .|+.+++++|++.+. ..++++.+|.+|.||||.|+. +++|
T Consensus 198 d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~L 271 (327)
T 1sw6_A 198 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWI 271 (327)
T ss_dssp CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHH
T ss_pred CCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHH
Confidence 9999999999999 899999999998731 037899999999999999985 8889
Q ss_pred HhcCCCCccccccCCCCHHHHHHhhccccCccccCCcc
Q 005862 377 VWDGRANQDIINFHGQTAYSIAKQKSAEINPEFFGNDD 414 (673)
Q Consensus 377 l~~~~~~~~~~n~~G~T~l~~a~~~~~~~~~~~l~~~~ 414 (673)
++. +++.+|.+|+||||+|+..++.+++++|++..
T Consensus 272 l~~---~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~G 306 (327)
T 1sw6_A 272 IAN---MLNAQDSNGDTCLNIAARLGNISIVDALLDYG 306 (327)
T ss_dssp HHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHh---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 876 58899999999999999999999999987654
No 41
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=1e-31 Score=265.95 Aligned_cols=216 Identities=17% Similarity=0.156 Sum_probs=181.9
Q ss_pred ccCCCCchHHHHHHHcCCHHHHHHHHHhCCCC--CcccccCCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcH
Q 005862 177 LKNVDCKSPLYLAVESKNEDILKYILEALPVN--DDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTP 254 (673)
Q Consensus 177 ~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~ 254 (673)
..|.+|.||||+|+..|+.+++++|++.+... ..+..+..|.||||.|+..|+.+++++|++.+ .+++.+|..|.||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~ 81 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG-CDPELRDFRGNTP 81 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCC-CCSCCCCTTCCCH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCH
Confidence 46788999999999999999999999874432 34466788999999999999999999999998 7888899999999
Q ss_pred HHHHHHCCCHHHHHHHHhhCCC-----cccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCC-CCCcHHHHH
Q 005862 255 MHWAASVDHLEGVRFLYEINPD-----SVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNT-KGQNILHVA 328 (673)
Q Consensus 255 Lh~A~~~g~~~~v~~Ll~~~~~-----~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~-~g~t~Lh~A 328 (673)
||+|+..|+.+++++|++.+++ ..+..+..|.||||+|+..|+.+++++|+++|. .++..+. .|+||||+|
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~---~~~~~~~~~g~tpL~~A 158 (236)
T 1ikn_D 82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGA---DVNAQEPCNGRTALHLA 158 (236)
T ss_dssp HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTC---CTTCCCTTTCCCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCC---CCCCCCCCCCCCHHHHH
Confidence 9999999999999999998864 256788889999999999999999999999763 3366676 899999999
Q ss_pred HhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCcc--ccccCCCCHHHHHHh
Q 005862 329 AKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQD--IINFHGQTAYSIAKQ 400 (673)
Q Consensus 329 ~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~~~~~~--~~n~~G~T~l~~a~~ 400 (673)
+..|+.+++++|++.| ++++.+|..|+||||+|+..|+.+++++|+++| ++.. .+|.+|.||.+.+..
T Consensus 159 ~~~~~~~~v~~Ll~~g---a~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~ 228 (236)
T 1ikn_D 159 VDLQNPDLVSLLLKCG---ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT-LENLQMLPESEDEESYDTESE 228 (236)
T ss_dssp HHTTCHHHHHHHHTTT---CCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTS-CGGGSSCCCCCTTTCCCCC--
T ss_pred HHcCCHHHHHHHHHcC---CCCCcccCCCCCHHHHHHccCchHHHHHHHHcc-hhhhhcCCccchHHHHhhhcc
Confidence 9999999999999998 889999999999999999999999999999887 7665 788889888766544
No 42
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=1.6e-31 Score=264.51 Aligned_cols=212 Identities=18% Similarity=0.199 Sum_probs=136.0
Q ss_pred ccCCCCCcHHHHHHh-CCccCHHHHHHHHHHhCCc---cccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcc
Q 005862 42 ITSPSENTLLHIAAA-GSIHDHENMATTLARKYPF---LITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQ 117 (673)
Q Consensus 42 ~~~~~g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~~~---ll~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~ 117 (673)
.+|.+|+||||+|+. |+ .+++++|++.++. .++..|..|.||||+|+..|+.++|++|+++|++
T Consensus 3 ~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------- 70 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEE----KALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-------- 70 (236)
T ss_dssp ----CCCCTTHHHHHTTC----SSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC--------
T ss_pred cCCCCCCchhHHHHHcCC----hhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--------
Confidence 467788888888888 88 8888888877653 4777888888888888888888888888888776
Q ss_pred cchhhhhhhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCc-----ccccCCCCchHHHHHHHc
Q 005862 118 IDVKGLMEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNA-----SYLKNVDCKSPLYLAVES 192 (673)
Q Consensus 118 ~~~~~~~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~-----~~~~~~~g~tpL~~A~~~ 192 (673)
++.+|..|+||||+|+. .++. +++++|++.+++. ....+..|.||||+|+..
T Consensus 71 ------~~~~~~~g~t~L~~A~~-------~~~~----------~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~ 127 (236)
T 1ikn_D 71 ------PELRDFRGNTPLHLACE-------QGCL----------ASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 127 (236)
T ss_dssp ------SCCCCTTCCCHHHHHHH-------HTCH----------HHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHT
T ss_pred ------CCCcCCCCCCHHHHHHH-------cCCH----------HHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHc
Confidence 55677788888888888 7887 8888888877542 224555666666666666
Q ss_pred CCHHHHHHHHHhCCCCCcccccC-CCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHH
Q 005862 193 KNEDILKYILEALPVNDDCATKL-EGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLY 271 (673)
Q Consensus 193 g~~~iv~~Ll~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll 271 (673)
|+.+++++|++.+.... ..+. .|.||||.|+..|+.+++++|++++ .+++.+|..|.||||+|+..|+.+++++|+
T Consensus 128 ~~~~~v~~Ll~~g~~~~--~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll 204 (236)
T 1ikn_D 128 GYLGIVELLVSLGADVN--AQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRVTYQGYSPYQLTWGRPSTRIQQQLG 204 (236)
T ss_dssp TCHHHHHHHHHHTCCTT--CCCTTTCCCHHHHHHHTTCHHHHHHHHTTT-CCSCCCCTTCCCGGGGCTTSSCHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcccCCCCCHHHHHHccCchHHHHHHH
Confidence 66666666666643332 2222 5556666666666666666666555 455555555556666665555666666665
Q ss_pred hhCCCcc-cccccCCChHHHH
Q 005862 272 EINPDSV-LQRNEEGFYPFHL 291 (673)
Q Consensus 272 ~~~~~~~-~~~d~~g~tpLh~ 291 (673)
+++++.. ..++..|.||.+.
T Consensus 205 ~~ga~~~~~~~~~~~~~~~~~ 225 (236)
T 1ikn_D 205 QLTLENLQMLPESEDEESYDT 225 (236)
T ss_dssp TTSCGGGSSCCCCCTTTCCCC
T ss_pred HcchhhhhcCCccchHHHHhh
Confidence 5555422 2444455554443
No 43
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=1.7e-29 Score=249.10 Aligned_cols=207 Identities=18% Similarity=0.167 Sum_probs=160.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhc-hhccCCCCCcccchhhhhhhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHH
Q 005862 83 KRDTPLHVAARAGMLQTAKILVDC-AKRSGMTSSSQIDVKGLMEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLV 161 (673)
Q Consensus 83 ~g~TpLh~Aa~~g~~~iv~~Ll~~-ga~~~~~~~~~~~~~~~~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~ 161 (673)
.|+||||+|++.|+.++|++|++. |++ ++.+|..|+||||+|+. .++.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~--------------~~~~~~~g~t~L~~A~~-------~g~~---------- 50 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCE--------------VHQRGAMGETALHIAAL-------YDNL---------- 50 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSC--------------TTCCCTTSCCHHHHHHH-------TTCH----------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCC--------------cccCCCCCCCHHHHHHH-------cCCH----------
Confidence 589999999999999999999987 666 67789999999999999 9999
Q ss_pred HHHHHHHhcCCCcc----cccCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHH
Q 005862 162 SLARSLVSEDPNAS----YLKNVDCKSPLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMH 237 (673)
Q Consensus 162 ~iv~~Ll~~~~~~~----~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 237 (673)
+++++|++.+++.. ...|..|.||||+|+..|+.+++++|++++..... .+ ..+.+
T Consensus 51 ~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~--~~~~~---------------- 110 (232)
T 2rfa_A 51 EAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSA--RA--TGSVF---------------- 110 (232)
T ss_dssp HHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CC--CSGGG----------------
T ss_pred HHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCc--cc--CCcce----------------
Confidence 99999999998863 24567899999999999999999999998555432 11 11111
Q ss_pred HcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHHcCCHHHH----HHHHhccCCCCC
Q 005862 238 DKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVM----GEFFEKENMPPP 313 (673)
Q Consensus 238 ~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv----~~Ll~~~~~~~~ 313 (673)
....+..|..|.||||+|+..|+.+++++|++++++ ++.+|.+|.||||+|+..|+.+++ +.|+++|..+..
T Consensus 111 ---~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~ 186 (232)
T 2rfa_A 111 ---HYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD-IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHL 186 (232)
T ss_dssp ---SCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSS
T ss_pred ---eecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhh
Confidence 012334566788888888888888888888888777 677788888888888888887776 777775533221
Q ss_pred ---cccCCCCCCcHHHHHHhcCCHHHHHHHHHhC
Q 005862 314 ---TELLNTKGQNILHVAAKKGKSDTVRRILKAS 344 (673)
Q Consensus 314 ---~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~ 344 (673)
.+.+|..|+||||+|+.+|+.+++++|++++
T Consensus 187 ~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 187 KSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp CCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred hhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 1466778888888888888888888888877
No 44
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=3.6e-29 Score=240.88 Aligned_cols=194 Identities=18% Similarity=0.215 Sum_probs=151.0
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHH
Q 005862 180 VDCKSPLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAA 259 (673)
Q Consensus 180 ~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~ 259 (673)
..+.|||+.|+..|+.+.++.|++..... .+..+..|.||||.|+..|+.+++++|++.+ .+++..|..|.||||+|+
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~ 80 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQ-VDEVDTEGNTPLNIAVHNNDIEIAKALIDRG-ADINLQNSISDSPYLYAG 80 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHH
Confidence 35678888888888888888888774422 2355667888888888888888888888887 677778888888888888
Q ss_pred HCCCHHHHHHHHhhCCCcccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCC-----H
Q 005862 260 SVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGK-----S 334 (673)
Q Consensus 260 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~-----~ 334 (673)
..|+.+++++|++.+....+..|..|.||||.|+..|+.+++++|++++ +..++.+|..|+||||+|+..++ .
T Consensus 81 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 158 (201)
T 3hra_A 81 AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG--REDIDFQNDFGYTALIEAVGLREGNQLYQ 158 (201)
T ss_dssp HTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHC--CCCTTCCCTTSCCHHHHHHHSSCCSHHHH
T ss_pred HcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCcCCCCCCCCCHHHHHHHhccchhhHH
Confidence 8888888888886655547778888888888888888888888888843 34456677788888888888777 7
Q ss_pred HHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhcC
Q 005862 335 DTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380 (673)
Q Consensus 335 ~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~ 380 (673)
+++++|++.| ++++.+|.+|+||||+|++.|+.+++++|+++|
T Consensus 159 ~~v~~Ll~~g---a~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 159 DIVKLLMENG---ADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHHHHHTT---CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHHHHHHCC---CCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 8888888887 777888888888888888888888888887654
No 45
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=2e-29 Score=248.51 Aligned_cols=191 Identities=19% Similarity=0.200 Sum_probs=147.0
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHh-CCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCCccc----ccCCCCCCcHH
Q 005862 181 DCKSPLYLAVESKNEDILKYILEA-LPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPALL----LIQDEQMNTPM 255 (673)
Q Consensus 181 ~g~tpL~~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~----~~~d~~g~t~L 255 (673)
.|+||||.|+..|+.+++++|++. +.. .+..+..|.||||.|+..|+.+++++|++.++... +..|..|.|||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L 79 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCE--VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTAL 79 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCC--cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHH
Confidence 478888888888888888888887 333 23556778888888888888888888888874322 45667888888
Q ss_pred HHHHHCCCHHHHHHHHhhCCCccccccc-------------CCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCC
Q 005862 256 HWAASVDHLEGVRFLYEINPDSVLQRNE-------------EGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQ 322 (673)
Q Consensus 256 h~A~~~g~~~~v~~Ll~~~~~~~~~~d~-------------~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~ 322 (673)
|+|+..|+.+++++|++++++ ++..+. +|.||||.|+..|+.+++++|+++| ..++.+|..|+
T Consensus 80 ~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~d~~g~ 155 (232)
T 2rfa_A 80 HIAVINQNVNLVRALLARGAS-VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG---ADIRAQDSLGN 155 (232)
T ss_dssp HHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTT---CCTTCCCTTSC
T ss_pred HHHHHcCCHHHHHHHHhCCCC-CCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCC---CCCCCCCCCCC
Confidence 888888888888888888877 444443 6888888888888888888888855 23466778888
Q ss_pred cHHHHHHhcCCHHHH----HHHHHhCCCcccc------cccCCCCCcHHHHHHHhCCHHHHHHHHhcC
Q 005862 323 NILHVAAKKGKSDTV----RRILKASNIDTLI------NEMDDDGNTPLHLAALYGRHLAAAILVWDG 380 (673)
Q Consensus 323 t~Lh~A~~~~~~~iv----~~Ll~~~~~~~~i------n~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~ 380 (673)
||||+|+.+++.+++ ++|++.+ ++. +.+|.+|+||||+|++.|+.+++++|++++
T Consensus 156 t~L~~A~~~~~~~~~~~i~~~Ll~~g---~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 156 TVLHILILQPNKTFACQMYNLLLSYD---GGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp CHHHHHHTCSCHHHHHHHHHHHHHTT---CSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHcCChHHHHHHHHHHHhcC---CchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 888888888888777 7788777 333 577888888888888888888888888776
No 46
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=1.4e-29 Score=243.81 Aligned_cols=192 Identities=23% Similarity=0.240 Sum_probs=178.3
Q ss_pred CCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHH
Q 005862 215 LEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASA 294 (673)
Q Consensus 215 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~ 294 (673)
..+.||||.|+..|+.+.++.+++.++.+++..|..|.||||+|+..|+.+++++|++++++ ++..|..|.||||.|+.
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~ 81 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD-INLQNSISDSPYLYAGA 81 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHH
Confidence 56899999999999999999999999879999999999999999999999999999999998 78899999999999999
Q ss_pred cCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCC-----
Q 005862 295 NGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGR----- 369 (673)
Q Consensus 295 ~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~----- 369 (673)
.|+.+++++|+++ .....+..|..|.||||+|+..++.+++++|++.+. .+++.+|..|+||||+|+..++
T Consensus 82 ~~~~~~~~~Ll~~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--~~~~~~~~~g~t~L~~A~~~~~~~~~~ 157 (201)
T 3hra_A 82 QGRTEILAYMLKH--ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR--EDIDFQNDFGYTALIEAVGLREGNQLY 157 (201)
T ss_dssp TTCHHHHHHHHHH--SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCC--CCTTCCCTTSCCHHHHHHHSSCCSHHH
T ss_pred cCCHHHHHHHHhc--cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCC--CCcCCCCCCCCCHHHHHHHhccchhhH
Confidence 9999999999973 344567889999999999999999999999999984 4589999999999999999998
Q ss_pred HHHHHHHHhcCCCCccccccCCCCHHHHHHhhccccCccccCC
Q 005862 370 HLAAAILVWDGRANQDIINFHGQTAYSIAKQKSAEINPEFFGN 412 (673)
Q Consensus 370 ~~~v~~Ll~~~~~~~~~~n~~G~T~l~~a~~~~~~~~~~~l~~ 412 (673)
.+++++|++.| ++++.+|..|+||+|+|+..++.+++++|.+
T Consensus 158 ~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 158 QDIVKLLMENG-ADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp HHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHCC-CCCCccCCCCCCHHHHHHHcCCHhHHHHHHh
Confidence 99999999987 9999999999999999999999888877654
No 47
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.96 E-value=1.6e-29 Score=256.03 Aligned_cols=212 Identities=17% Similarity=0.151 Sum_probs=169.6
Q ss_pred ccCCCCchHHHHHHHcCCHHHHHHHHHh----CCCCC--cccccCCCCcHHHHHHHh---CcHHHHHHHHHcCCcc----
Q 005862 177 LKNVDCKSPLYLAVESKNEDILKYILEA----LPVND--DCATKLEGKSPVKVAIEL---QKLGLLKMMHDKQPAL---- 243 (673)
Q Consensus 177 ~~~~~g~tpL~~A~~~g~~~iv~~Ll~~----~~~~~--~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~---- 243 (673)
..|..|.||||.|+..|+.++++.|++. +.... ....+..|.||||.|+.. |+.+++++|++.+...
T Consensus 8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~ 87 (273)
T 2pnn_A 8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK 87 (273)
T ss_dssp ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHH
T ss_pred CCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchh
Confidence 4678899999999999999999999985 22211 113467899999999987 9999999999987211
Q ss_pred --cc----cCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCccccccc--------------CCChHHHHHHHcCCHHHHHH
Q 005862 244 --LL----IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNE--------------EGFYPFHLASANGRVRVMGE 303 (673)
Q Consensus 244 --~~----~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~--------------~g~tpLh~A~~~g~~~iv~~ 303 (673)
++ ..|..|.||||+|+..|+.+++++|++++++ ++..+. .|.||||+|+..|+.+++++
T Consensus 88 ~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 166 (273)
T 2pnn_A 88 QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD-VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF 166 (273)
T ss_dssp HHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHH
T ss_pred HHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence 22 2567899999999999999999999999988 667776 79999999999999999999
Q ss_pred HHh---ccCCCCCcccCCCCCCcHHHHHHhcCC---------HHHHHHHHHhCCCccccc-------ccCCCCCcHHHHH
Q 005862 304 FFE---KENMPPPTELLNTKGQNILHVAAKKGK---------SDTVRRILKASNIDTLIN-------EMDDDGNTPLHLA 364 (673)
Q Consensus 304 Ll~---~~~~~~~~~~~d~~g~t~Lh~A~~~~~---------~~iv~~Ll~~~~~~~~in-------~~d~~G~T~Lh~A 364 (673)
|++ +| ..++.+|.+|+||||+|+..++ .+++++|++.| +++| .+|.+|+||||+|
T Consensus 167 Ll~~~~~g---ad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g---a~~n~~~~~~~~~d~~g~TpL~~A 240 (273)
T 2pnn_A 167 LLQNSWQP---ADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG---AKLHPTLKLEEITNRKGLTPLALA 240 (273)
T ss_dssp HHHCSSCC---CCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH---HHHCTTCCGGGCCCTTSCCHHHHH
T ss_pred HHhcccCC---CCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhh---hhcccccccccccCCCCCCHHHHH
Confidence 999 55 5557889999999999999988 79999999998 7776 5899999999999
Q ss_pred HHhCCHHHHHHHHhcCCCCccccccCCCCHH
Q 005862 365 ALYGRHLAAAILVWDGRANQDIINFHGQTAY 395 (673)
Q Consensus 365 ~~~~~~~~v~~Ll~~~~~~~~~~n~~G~T~l 395 (673)
++.|+.+++++|+++|..|+......+.+|-
T Consensus 241 ~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~ 271 (273)
T 2pnn_A 241 ASSGKIGVLAYILQREIHEPECRHAAAHHHH 271 (273)
T ss_dssp HHTTCHHHHHHHHHHHTC-------------
T ss_pred HHhChHHHHHHHHHCCCCCchhhhhhhhhcc
Confidence 9999999999999998448888777777664
No 48
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.96 E-value=2.2e-28 Score=227.95 Aligned_cols=159 Identities=27% Similarity=0.352 Sum_probs=140.7
Q ss_pred cHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHHcCCH
Q 005862 219 SPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRV 298 (673)
Q Consensus 219 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~ 298 (673)
++|+.|++.|+.++++.|++.| .+++.+|.+|+||||+|+..++.+++++|++.+++ ++.+|.+|+||||+|+..|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~G-advn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad-~~~~d~~g~TpLh~A~~~g~~ 83 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENG-ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHK 83 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc-hhhhccCCCCHHHHHHHcCCH
Confidence 3688899999999999999988 78899999999999999999999999999999988 788999999999999999999
Q ss_pred HHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHh
Q 005862 299 RVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVW 378 (673)
Q Consensus 299 ~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll~ 378 (673)
+++++|+++| ..++.+|.+|+||||+|+.+|+.+++++|++.| ++++.+|.+|+||||+|++.|+.+++++|++
T Consensus 84 ~~v~~Ll~~g---advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g---ad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~ 157 (169)
T 4gpm_A 84 EVVKLLISKG---ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG---ADVNTSDSDGRTPLDLAREHGNEEVVKLLEK 157 (169)
T ss_dssp HHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHCc---CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 9999999966 334778999999999999999999999999998 8899999999999999999999999999998
Q ss_pred cCCCCccc
Q 005862 379 DGRANQDI 386 (673)
Q Consensus 379 ~~~~~~~~ 386 (673)
+| ++++.
T Consensus 158 ~G-A~ie~ 164 (169)
T 4gpm_A 158 QG-GWLEH 164 (169)
T ss_dssp C-------
T ss_pred CC-CCcCC
Confidence 87 87754
No 49
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.96 E-value=6.7e-29 Score=251.39 Aligned_cols=217 Identities=19% Similarity=0.207 Sum_probs=142.6
Q ss_pred cccCCCCCcHHHHHHh-CCccCHHHHHHHHHHh----CCcccc----ccCCCCCcHHHHHHHc---CCHHHHHHHHhchh
Q 005862 41 TITSPSENTLLHIAAA-GSIHDHENMATTLARK----YPFLIT----MQNSKRDTPLHVAARA---GMLQTAKILVDCAK 108 (673)
Q Consensus 41 ~~~~~~g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~----~~~ll~----~~~~~g~TpLh~Aa~~---g~~~iv~~Ll~~ga 108 (673)
+..|..|+|+||.||+ |+ .++|+.|++. +.+ ++ ..|..|.||||+|+.. |+.++|++|+++|+
T Consensus 7 ~~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~~~~~~~~-~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga 81 (273)
T 2pnn_A 7 KPPRLYDRRSIFDAVAQSN----CQELESLLPFLQRSKKR-LTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVAR 81 (273)
T ss_dssp ----CCCHHHHHHHHHTTC----SSTTTTHHHHHHHSCCC-TTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHH
T ss_pred CCCCcccchHHHHHHHcCC----HHHHHHHHHHHhhcccc-cCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhc
Confidence 3478889999999999 99 8888877763 433 33 4588999999999987 99999999999998
Q ss_pred ccCCCCCcccchhhhhhh----cCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCch
Q 005862 109 RSGMTSSSQIDVKGLMEM----KNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKS 184 (673)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~----~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t 184 (673)
+.+.. +.+++. +|..|+||||+|+. .++. +++++|++.|++++ ..+..+.
T Consensus 82 ~~~~~-------~~~i~~~~~~~d~~g~tpL~~A~~-------~g~~----------~~v~~Ll~~ga~~~-~~~~~~~- 135 (273)
T 2pnn_A 82 KTDSL-------KQFVNASYTDSYYKGQTALHIAIE-------RRNM----------TLVTLLVENGADVQ-AAANGDF- 135 (273)
T ss_dssp HTTCH-------HHHHTCCCCSTTTTTCCHHHHHHH-------TTCH----------HHHHHHHHTTCCTT-CCBCSGG-
T ss_pred cccch-------hHHhhcccccccCCCCCHHHHHHH-------cCCH----------HHHHHHHHCCCCcC-ccccccc-
Confidence 74321 112333 67799999999999 9999 99999999999987 3443210
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHH---cCCcccccCCCCCCcHHHHHHHC
Q 005862 185 PLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHD---KQPALLLIQDEQMNTPMHWAASV 261 (673)
Q Consensus 185 pL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~~ 261 (673)
.. .......+..|.||||.|+..|+.+++++|++ .+ .+++.+|..|+||||+|+..
T Consensus 136 -----------------~~---~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g-ad~~~~d~~g~tpLh~A~~~ 194 (273)
T 2pnn_A 136 -----------------FK---KTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQP-ADISARDSVGNTVLHALVEV 194 (273)
T ss_dssp -----------------GS---SCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCC-CCTTCCCTTSCCHHHHHHHH
T ss_pred -----------------cc---cccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCC-CCceeeCCCCCcHHHHHHHc
Confidence 00 00111223345555555555555555555555 33 55555666666666666665
Q ss_pred CC---------HHHHHHHHhhCCCcc------cccccCCChHHHHHHHcCCHHHHHHHHhccC
Q 005862 262 DH---------LEGVRFLYEINPDSV------LQRNEEGFYPFHLASANGRVRVMGEFFEKEN 309 (673)
Q Consensus 262 g~---------~~~v~~Ll~~~~~~~------~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~ 309 (673)
|+ .+++++|++++++.. +.+|..|.||||+|+..|+.+++++|+++|.
T Consensus 195 ~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga 257 (273)
T 2pnn_A 195 ADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI 257 (273)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCC
Confidence 55 566666666655521 2356666666666666666666666666553
No 50
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.96 E-value=1.6e-28 Score=246.10 Aligned_cols=192 Identities=19% Similarity=0.176 Sum_probs=154.7
Q ss_pred CCchHHHHHHHcCCHH----HHHHHHHhCCCCCc--ccccCCCCcHHHHHHHh---CcHHHHHHHHHcCCcccc------
Q 005862 181 DCKSPLYLAVESKNED----ILKYILEALPVNDD--CATKLEGKSPVKVAIEL---QKLGLLKMMHDKQPALLL------ 245 (673)
Q Consensus 181 ~g~tpL~~A~~~g~~~----iv~~Ll~~~~~~~~--~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~------ 245 (673)
.|+||||.|+..|+.+ ++++|++.+..... ...+..|.||||.|+.. |+.+++++|++.+ ...+
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g-~~~~~~~~~~ 79 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQID-KDSGNPKPLV 79 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHH-HHTTCSSCGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcC-Ccccchhhhc
Confidence 3789999999999997 55666666544321 02577899999999998 9999999999887 3333
Q ss_pred -----cCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccC-------------CChHHHHHHHcCCHHHHHHHHh-
Q 005862 246 -----IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEE-------------GFYPFHLASANGRVRVMGEFFE- 306 (673)
Q Consensus 246 -----~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~-------------g~tpLh~A~~~g~~~iv~~Ll~- 306 (673)
..|..|.||||+|+..|+.+++++|++++++ ++..|.. |.||||.|+..|+.+++++|++
T Consensus 80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ 158 (256)
T 2etb_A 80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLEN 158 (256)
T ss_dssp GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 2346799999999999999999999999888 6666665 8899999999999999999888
Q ss_pred --ccCCCCCcccCCCCCCcHHHHHHh--cCCHH-------HHHHHHHhCCCcccc-------cccCCCCCcHHHHHHHhC
Q 005862 307 --KENMPPPTELLNTKGQNILHVAAK--KGKSD-------TVRRILKASNIDTLI-------NEMDDDGNTPLHLAALYG 368 (673)
Q Consensus 307 --~~~~~~~~~~~d~~g~t~Lh~A~~--~~~~~-------iv~~Ll~~~~~~~~i-------n~~d~~G~T~Lh~A~~~~ 368 (673)
+| ..++.+|.+|+||||+|+. +++.+ ++++|++.| +++ +.+|.+|+||||+|++.|
T Consensus 159 ~~~g---a~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~g---a~~~~~~~~~~~~d~~g~tpL~~A~~~g 232 (256)
T 2etb_A 159 PHQP---ASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMG---ARLCPTVQLEEISNHQGLTPLKLAAKEG 232 (256)
T ss_dssp SSCC---CCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH---HHHSTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred cccC---CCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcC---CCcccccccccccCCCCCCHHHHHHHhC
Confidence 55 4457778888999999888 77877 888888888 777 888888999999999999
Q ss_pred CHHHHHHHHhcC
Q 005862 369 RHLAAAILVWDG 380 (673)
Q Consensus 369 ~~~~v~~Ll~~~ 380 (673)
+.+++++|++++
T Consensus 233 ~~~~v~~Ll~~g 244 (256)
T 2etb_A 233 KIEIFRHILQRE 244 (256)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHhCC
Confidence 999998888876
No 51
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.96 E-value=1.3e-28 Score=246.84 Aligned_cols=218 Identities=18% Similarity=0.213 Sum_probs=156.4
Q ss_pred CCCcHHHHHHh-CCccCHHHHHHHHHHhCCccccc----cCCCCCcHHHHHHHc---CCHHHHHHHHhchhccCCCCCcc
Q 005862 46 SENTLLHIAAA-GSIHDHENMATTLARKYPFLITM----QNSKRDTPLHVAARA---GMLQTAKILVDCAKRSGMTSSSQ 117 (673)
Q Consensus 46 ~g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~~~ll~~----~~~~g~TpLh~Aa~~---g~~~iv~~Ll~~ga~~~~~~~~~ 117 (673)
.|+||||.||. |+.+....++++|++++.+ ++. .|..|.||||+|+.. |+.++|++|+++|++.+....
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~-i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~-- 77 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKY-LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKP-- 77 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSC--
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCC-cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhh--
Confidence 48999999999 9922222477888888887 776 899999999999999 999999999999998543210
Q ss_pred cchhhhhhhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHH
Q 005862 118 IDVKGLMEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDI 197 (673)
Q Consensus 118 ~~~~~~~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~i 197 (673)
........+|..|+||||+|+. .++. +++++|++.|++++ ..+..+.++
T Consensus 78 -~~~~~~~~~d~~g~t~L~~A~~-------~g~~----------~~v~~Ll~~ga~~~-~~~~~~~~~------------ 126 (256)
T 2etb_A 78 -LVNAQCTDEFYQGHSALHIAIE-------KRSL----------QCVKLLVENGADVH-LRACGRFFQ------------ 126 (256)
T ss_dssp -GGGCCCCSTTTTTCCHHHHHHH-------TTCH----------HHHHHHHHTTCCTT-CCCCSGGGS------------
T ss_pred -hcccccccccccCCCHHHHHHH-------cCCH----------HHHHHHHHcCCCCC-ccccccccc------------
Confidence 0011122356789999999999 9999 99999999999987 444442211
Q ss_pred HHHHHHhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHH---cCCcccccCCCCCCcHHHHHHH--CCCHH-------
Q 005862 198 LKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHD---KQPALLLIQDEQMNTPMHWAAS--VDHLE------- 265 (673)
Q Consensus 198 v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~--~g~~~------- 265 (673)
......+..|.||||.|+..|+.+++++|++ .+ .+++.+|..|+||||+|+. .++.+
T Consensus 127 ----------~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~g-a~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~ 195 (256)
T 2etb_A 127 ----------KHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQP-ASLEATDSLGNTVLHALVMIADNSPENSALVIH 195 (256)
T ss_dssp ----------CCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC-CCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHH
T ss_pred ----------ccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC-CCcCccCCCCCCHHHHHHHcccCCchhhHHHHH
Confidence 0111223346666666666666666666666 44 6666777777777777776 66666
Q ss_pred HHHHHHhhCCCcc------cccccCCChHHHHHHHcCCHHHHHHHHhcc
Q 005862 266 GVRFLYEINPDSV------LQRNEEGFYPFHLASANGRVRVMGEFFEKE 308 (673)
Q Consensus 266 ~v~~Ll~~~~~~~------~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~ 308 (673)
++++|++++++.. +.+|..|.||||+|+..|+.+++++|+++|
T Consensus 196 iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g 244 (256)
T 2etb_A 196 MYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQRE 244 (256)
T ss_dssp HHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence 7777777776621 667777777777777777777777777755
No 52
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.95 E-value=6.4e-28 Score=242.20 Aligned_cols=198 Identities=18% Similarity=0.165 Sum_probs=159.7
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHH----hCCCCCcc--cccCCCCcHHHHHH---HhCcHHHHHHHHHcCC--------
Q 005862 179 NVDCKSPLYLAVESKNEDILKYILE----ALPVNDDC--ATKLEGKSPVKVAI---ELQKLGLLKMMHDKQP-------- 241 (673)
Q Consensus 179 ~~~g~tpL~~A~~~g~~~iv~~Ll~----~~~~~~~~--~~~~~g~t~L~~A~---~~~~~~~v~~Ll~~~~-------- 241 (673)
+..++++||.|+..|+.+.++.|++ .+...... ..+..|.||||.|+ ..|+.+++++|++.+.
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 81 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF 81 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence 4568899999999999996555555 65443322 23367999999999 6799999999999862
Q ss_pred --cccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccc--------------cCCChHHHHHHHcCCHHHHHHHH
Q 005862 242 --ALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRN--------------EEGFYPFHLASANGRVRVMGEFF 305 (673)
Q Consensus 242 --~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d--------------~~g~tpLh~A~~~g~~~iv~~Ll 305 (673)
...+..|..|+||||+|+..|+.+++++|++++++ ++..+ ..|.||||+|+..|+.+++++|+
T Consensus 82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 160 (260)
T 3jxi_A 82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160 (260)
T ss_dssp HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC-cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 22344556899999999999999999999999888 66666 57999999999999999999999
Q ss_pred hccCCCCCcccCCCCCCcHHHHHHhcCC---------HHHHHHHHHhCCCcccc-------cccCCCCCcHHHHHHHhCC
Q 005862 306 EKENMPPPTELLNTKGQNILHVAAKKGK---------SDTVRRILKASNIDTLI-------NEMDDDGNTPLHLAALYGR 369 (673)
Q Consensus 306 ~~~~~~~~~~~~d~~g~t~Lh~A~~~~~---------~~iv~~Ll~~~~~~~~i-------n~~d~~G~T~Lh~A~~~~~ 369 (673)
+.+.....++.+|..|+||||+|+..++ .+++++|++.| +++ +.+|.+|+||||+|++.|+
T Consensus 161 ~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g---a~~~~~~~~~~~~d~~g~tpL~~A~~~g~ 237 (260)
T 3jxi_A 161 ENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC---AKLFPDTNLEALLNNDGLSPLMMAAKTGK 237 (260)
T ss_dssp HCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHH---HHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred hccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhC---cccccccchhhcccCCCCCHHHHHHHcCC
Confidence 8221224557788899999999998777 68999999988 666 6789999999999999999
Q ss_pred HHHHHHHHhcC
Q 005862 370 HLAAAILVWDG 380 (673)
Q Consensus 370 ~~~v~~Ll~~~ 380 (673)
.+++++|++++
T Consensus 238 ~~~v~~Ll~~g 248 (260)
T 3jxi_A 238 IGIFQHIIRRE 248 (260)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999999877
No 53
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.95 E-value=1.5e-27 Score=222.24 Aligned_cols=154 Identities=26% Similarity=0.382 Sum_probs=144.0
Q ss_pred cHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcC
Q 005862 253 TPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKG 332 (673)
Q Consensus 253 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~ 332 (673)
++|+.|++.|+.++|+.|+++|++ ++.+|.+|+||||.|+..++.++++.|+++| ..++.+|.+|+||||+|+.+|
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gad-vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~g---ad~~~~d~~g~TpLh~A~~~g 81 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKG---ADVNAKDSDGRTPLHHAAENG 81 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcc---cchhhhccCCCCHHHHHHHcC
Confidence 579999999999999999999998 8899999999999999999999999999966 334778999999999999999
Q ss_pred CHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCccccccCCCCHHHHHHhhccccCccccCC
Q 005862 333 KSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIAKQKSAEINPEFFGN 412 (673)
Q Consensus 333 ~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~G~T~l~~a~~~~~~~~~~~l~~ 412 (673)
+.+++++|++.| +++|.+|.+|+||||+|++.|+.+++++|++.| ++++.+|.+|+|||++|++.++.+++++|.+
T Consensus 82 ~~~~v~~Ll~~g---advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~ 157 (169)
T 4gpm_A 82 HKEVVKLLISKG---ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG-ADVNTSDSDGRTPLDLAREHGNEEVVKLLEK 157 (169)
T ss_dssp CHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred CHHHHHHHHHCc---CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 999999999999 889999999999999999999999999999987 9999999999999999999999988887765
Q ss_pred cc
Q 005862 413 DD 414 (673)
Q Consensus 413 ~~ 414 (673)
..
T Consensus 158 ~G 159 (169)
T 4gpm_A 158 QG 159 (169)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.95 E-value=1.4e-27 Score=239.80 Aligned_cols=221 Identities=22% Similarity=0.242 Sum_probs=138.0
Q ss_pred CCCCCcHHHHHHh-CCccCHHHHHHHHHHhCCccccccC----CCCCcHHHHHH---HcCCHHHHHHHHhchhccCCCCC
Q 005862 44 SPSENTLLHIAAA-GSIHDHENMATTLARKYPFLITMQN----SKRDTPLHVAA---RAGMLQTAKILVDCAKRSGMTSS 115 (673)
Q Consensus 44 ~~~g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~~~ll~~~~----~~g~TpLh~Aa---~~g~~~iv~~Ll~~ga~~~~~~~ 115 (673)
+..|+|+||.||+ |+.+....++++|++.+.+ ++..+ ..|.||||+|+ +.|+.++|++|++.|++.+....
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~ 80 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKR-LTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE 80 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence 4568999999999 9922222256666668877 55454 77999999999 77999999999999987432110
Q ss_pred cccchhhhhhhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHcCCH
Q 005862 116 SQIDVKGLMEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNE 195 (673)
Q Consensus 116 ~~~~~~~~~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ 195 (673)
.....++.+|..|+||||+|+. .|+. +++++|++.|++++ ..+..+.
T Consensus 81 ---~~~~~~~~~d~~g~t~L~~A~~-------~g~~----------~~v~~Ll~~ga~~~-~~~~~~~------------ 127 (260)
T 3jxi_A 81 ---FINSPFRDVYYRGQTALHIAIE-------RRCK----------HYVELLVEKGADVH-AQARGRF------------ 127 (260)
T ss_dssp ---HHTCCBCCSSEESBCHHHHHHH-------TTCH----------HHHHHHHHTTCCTT-CCCEECC------------
T ss_pred ---hhcccccccccCCCCHHHHHHH-------cCCH----------HHHHHHHhCCCCcC-ccccccc------------
Confidence 0112244567799999999999 9999 99999999999987 3442100
Q ss_pred HHHHHHHHhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHH---cCCcccccCCCCCCcHHHHHHHCCC---------
Q 005862 196 DILKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHD---KQPALLLIQDEQMNTPMHWAASVDH--------- 263 (673)
Q Consensus 196 ~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~~g~--------- 263 (673)
....+....+..|.||||.|+..|+.+++++|++ .+ .+++.+|..|+||||+|+..++
T Consensus 128 ---------~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g-a~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~ 197 (260)
T 3jxi_A 128 ---------FQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ-ADLRRQDSRGNTVLHALVAIADNTRENTKFV 197 (260)
T ss_dssp ---------CSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC-CCTTCCCTTSCCHHHHHHHHCCSSHHHHHHH
T ss_pred ---------cCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC-CCCcccCCCCCcHHHHHHHhccCchhHHHHH
Confidence 0000001122334555555555555555555555 33 4455555555555555555444
Q ss_pred HHHHHHHHhhCCCcc------cccccCCChHHHHHHHcCCHHHHHHHHhcc
Q 005862 264 LEGVRFLYEINPDSV------LQRNEEGFYPFHLASANGRVRVMGEFFEKE 308 (673)
Q Consensus 264 ~~~v~~Ll~~~~~~~------~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~ 308 (673)
.+++++|++++++.. +..|..|.||||+|++.|+.+++++|+++|
T Consensus 198 ~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g 248 (260)
T 3jxi_A 198 TKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRRE 248 (260)
T ss_dssp HHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence 455555555555411 345556666666666666666666666544
No 55
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.95 E-value=3.8e-27 Score=220.77 Aligned_cols=170 Identities=22% Similarity=0.260 Sum_probs=151.0
Q ss_pred CCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHHcC
Q 005862 217 GKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANG 296 (673)
Q Consensus 217 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g 296 (673)
+.+|||.|+..|+.++++.|++.++..++..|..|+||||+|+..|+.+++++|++++++ ++..|..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLASTGG 80 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-chhhcccCCCHHHHHHHCC
Confidence 468999999999999999999999777899999999999999999999999999999988 7889999999999999999
Q ss_pred CHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHHHH
Q 005862 297 RVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAIL 376 (673)
Q Consensus 297 ~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~L 376 (673)
+.+++++|+++| ..++..|..|+||||+|+.+++.+++++|++.| ++++.+|.+|+||||+|+..|+.+++++|
T Consensus 81 ~~~~v~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~t~l~~A~~~~~~~~~~~L 154 (172)
T 3v30_A 81 YTDIVGLLLERD---VDINIYDWNGGTPLLYAVRGNHVKCVEALLARG---ADLTTEADSGYTPMDLAVALGYRKVQQVI 154 (172)
T ss_dssp CHHHHHHHHTTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHHHcC---CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCccccCCCCCCHHHHHHHhCcHHHHHHH
Confidence 999999999965 334778899999999999999999999999998 88999999999999999999999999999
Q ss_pred HhcCCCCccccccCCCCH
Q 005862 377 VWDGRANQDIINFHGQTA 394 (673)
Q Consensus 377 l~~~~~~~~~~n~~G~T~ 394 (673)
++++ +++..+|..|.||
T Consensus 155 ~~~~-~~~~~~~~~~~~p 171 (172)
T 3v30_A 155 ENHI-LKLFQSNLVPADP 171 (172)
T ss_dssp HHHH-HHHSCC-------
T ss_pred HHHH-HHHhcccCCCCCC
Confidence 9987 8999999999887
No 56
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=1.6e-29 Score=265.79 Aligned_cols=284 Identities=14% Similarity=0.134 Sum_probs=198.5
Q ss_pred CCcHHHHHHh--CCccCHHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccchhhhh
Q 005862 47 ENTLLHIAAA--GSIHDHENMATTLARKYPFLITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLM 124 (673)
Q Consensus 47 g~t~Lh~Aa~--g~~~~~~e~v~~Ll~~~~~ll~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~ 124 (673)
+.+.++.|+. ++ .++++++++++.+ +.||||+|++.|+.++|++|+++|+... ..
T Consensus 65 ~ll~~~~a~~~~~~----~~~~~~l~~~g~~--------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~-----------~~ 121 (376)
T 2aja_A 65 QLLCLYYAHYNRNA----KQLWSDAHKKGIK--------SEVICFVAAITGCSSALDTLCLLLTSDE-----------IV 121 (376)
T ss_dssp HHHHHHHHHTTTTC----TTHHHHHHHHTCC--------HHHHHHHHHHHCCHHHHHHHTTC--CCS-----------SC
T ss_pred HHHHHHHHHhcCCC----HHHHHHHHHcCCC--------cCCHHHHHHHcCCHHHHHHHHHcCCcHH-----------HH
Confidence 3467888876 66 8889999887654 3599999999999999999999987311 11
Q ss_pred hhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCcc--cccCCCCchHHHHHHHcCCHHHHHHHH
Q 005862 125 EMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNAS--YLKNVDCKSPLYLAVESKNEDILKYIL 202 (673)
Q Consensus 125 ~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~--~~~~~~g~tpL~~A~~~g~~~iv~~Ll 202 (673)
+..|..|+||||+|+. .|+. +++++|+++|++.. ...+.+ .||||+|+..|+.+++++|+
T Consensus 122 ~~~~~~~~tpL~~Aa~-------~G~~----------eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll 183 (376)
T 2aja_A 122 KVIQAENYQAFRLAAE-------NGHL----------HVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLC 183 (376)
T ss_dssp C--CHHHHHHHHHHHH-------TTCH----------HHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHH
T ss_pred HHhccCCCCHHHHHHH-------cCCH----------HHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHH
Confidence 2345678899999999 9999 99999999997521 122222 89999999999999999999
Q ss_pred HhCCCCCcccccCCCCcHHHHHH-HhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCccccc
Q 005862 203 EALPVNDDCATKLEGKSPVKVAI-ELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQR 281 (673)
Q Consensus 203 ~~~~~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~ 281 (673)
+++.+......+..|.||||.|+ ..|+.+++++|++.+ . .|.||||+|+..|+.+++++|++++++ .+..
T Consensus 184 ~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g-a-------~~~taL~~Aa~~g~~evv~lL~~~ga~-~~~~ 254 (376)
T 2aja_A 184 ELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP-V-------MLAYAEIHEFEYGEKYVNPFIARHVNR-LKEM 254 (376)
T ss_dssp HSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH-H-------HHHHHHHCTTTTTTTTHHHHHHHHHHH-HHHH
T ss_pred HcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCC-C-------ccchHHHHHHHCCCHHHHHHHHhcCcc-cccc
Confidence 98654321125567899999999 999999999999865 2 278999999999999999999998876 3333
Q ss_pred ccCCChHHHHHHHcCCHHHH------------HHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCCccc
Q 005862 282 NEEGFYPFHLASANGRVRVM------------GEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTL 349 (673)
Q Consensus 282 d~~g~tpLh~A~~~g~~~iv------------~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~ 349 (673)
+ ++++.|+..|+.+++ +.++.++ ..+..+.+++|++.+..+..
T Consensus 255 ~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~---------------------~~~~~~~~~~Ll~~~~vk~l 309 (376)
T 2aja_A 255 H----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRN---------------------DEVLLDDIRFLLSIPGIKAL 309 (376)
T ss_dssp H----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHC---------------------CGGGHHHHHHHHTSTTTGGG
T ss_pred c----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcc---------------------hhhHHHHHHHHHhChhhhhh
Confidence 2 467788888876643 3444422 11236777888876533222
Q ss_pred c--cccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCccccccCCCCHHHHHHhhccccCccc
Q 005862 350 I--NEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIAKQKSAEINPEF 409 (673)
Q Consensus 350 i--n~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~G~T~l~~a~~~~~~~~~~~ 409 (673)
. ...++.++||||+|++.|+.+++++|++.+ ..++..|+|++++|...|+.++.+.
T Consensus 310 ~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~----~v~~~~~~~~~~~~~~~~~~~~~~~ 367 (376)
T 2aja_A 310 APTATIPGDANELLRLALRLGNQGACALLLSIP----SVLALTKANNYYINETGGRLDLRAV 367 (376)
T ss_dssp SSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH----HHHHSCC------------------
T ss_pred hccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh----HHHHHHHHhccccccccccccHHHH
Confidence 2 233457889999999999999999999654 7788999999999999988777644
No 57
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.94 E-value=2e-27 Score=240.76 Aligned_cols=191 Identities=18% Similarity=0.212 Sum_probs=123.6
Q ss_pred chHHHHHHHcCCHHHHHHHHHhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHH---
Q 005862 183 KSPLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAA--- 259 (673)
Q Consensus 183 ~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~--- 259 (673)
.+++|.|+..|+.+.++.+++.......+..+..|.||||.|+..|+.+++++|++.+..+++..|..|.||||+|+
T Consensus 77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~ 156 (276)
T 4hbd_A 77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALAT 156 (276)
T ss_dssp STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCC
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHH
Confidence 45666777777777777666553222223445666677777777777777777777664466666666777777666
Q ss_pred --HCCCHHHHHHHHhhCCCcccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHH
Q 005862 260 --SVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTV 337 (673)
Q Consensus 260 --~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv 337 (673)
..++.++++.|++.+.. .+..|..|.||||+|+..|+.++++.|+++| ..++.+|.+|+||||+|+.+|+.+++
T Consensus 157 ~~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~g---ad~n~~d~~G~TpLh~A~~~g~~~iv 232 (276)
T 4hbd_A 157 LKTQDDIETVLQLFRLGNI-NAKASQAGQTALMLAVSHGRVDVVKALLACE---ADVNVQDDDGSTALMCACEHGHKEIA 232 (276)
T ss_dssp CCSHHHHHHHHHHHHHSCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred hhhhhhHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhCC---CCCCCCCCCCCCHHHHHHHCCCHHHH
Confidence 44666666666666655 4556666667777777777777777776644 22355566667777777777777777
Q ss_pred HHHHH-hCCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhcC
Q 005862 338 RRILK-ASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380 (673)
Q Consensus 338 ~~Ll~-~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~ 380 (673)
++|++ .| ++++.+|.+|+||||+|+..|+.+++++|+++.
T Consensus 233 ~~Ll~~~g---ad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 233 GLLLAVPS---CDISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HHHHTSTT---CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHhcCC---CCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 77766 45 556666666777777777777777777666654
No 58
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.94 E-value=1.3e-27 Score=242.07 Aligned_cols=190 Identities=21% Similarity=0.274 Sum_probs=172.6
Q ss_pred CCcHHHHHHHhCcHHHHHHHHHcCC-cccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHH--
Q 005862 217 GKSPVKVAIELQKLGLLKMMHDKQP-ALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLAS-- 293 (673)
Q Consensus 217 g~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~-- 293 (673)
..+++|.|+..++.+.++.+++... ..++..|.+|+||||+|+..|+.+++++|++.++..++..|..|.||||.|+
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~ 155 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA 155 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence 4567899999999999999988762 2378899999999999999999999999999998558999999999999999
Q ss_pred ---HcCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCH
Q 005862 294 ---ANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRH 370 (673)
Q Consensus 294 ---~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~ 370 (673)
..++.++++.|++.| ......+..|+||||+|+.+|+.+++++|++.| +++|.+|.+|+||||+|+..|+.
T Consensus 156 ~~~~~~~~~~v~~Ll~~g---~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~g---ad~n~~d~~G~TpLh~A~~~g~~ 229 (276)
T 4hbd_A 156 TLKTQDDIETVLQLFRLG---NINAKASQAGQTALMLAVSHGRVDVVKALLACE---ADVNVQDDDGSTALMCACEHGHK 229 (276)
T ss_dssp CCCSHHHHHHHHHHHHHS---CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHHTCH
T ss_pred HhhhhhhHHHHHHHHHcC---CCccccCCCCCCHHHHHHHcCCHHHHHHHHhCC---CCCCCCCCCCCCHHHHHHHCCCH
Confidence 678899999999977 444667889999999999999999999999998 88999999999999999999999
Q ss_pred HHHHHHHhcCCCCccccccCCCCHHHHHHhhccccCccccCC
Q 005862 371 LAAAILVWDGRANQDIINFHGQTAYSIAKQKSAEINPEFFGN 412 (673)
Q Consensus 371 ~~v~~Ll~~~~~~~~~~n~~G~T~l~~a~~~~~~~~~~~l~~ 412 (673)
+++++|++..+++++.+|.+|+||||+|+..++.+++++|.+
T Consensus 230 ~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~ 271 (276)
T 4hbd_A 230 EIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYS 271 (276)
T ss_dssp HHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 999999985569999999999999999999999988877643
No 59
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.94 E-value=5.1e-26 Score=217.23 Aligned_cols=160 Identities=21% Similarity=0.215 Sum_probs=126.0
Q ss_pred ccCCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHH
Q 005862 213 TKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLA 292 (673)
Q Consensus 213 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A 292 (673)
.+..|.||||.|+..|+.+++++|++.+ .+++..|..|.||||+|+..|+.+++++|++++++ ++..|..|.||||+|
T Consensus 31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A 108 (192)
T 2rfm_A 31 RDSYNRTPLMVACMLGMENAIDKLVENF-DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-VNTKDFSGKTPLMWS 108 (192)
T ss_dssp CCTTCCCHHHHHHHHTCGGGHHHHHHHH-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHhc-cccccccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHH
Confidence 4566777777777777777777777776 56677777888888888888888888888888777 677778888888888
Q ss_pred HHcCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHH
Q 005862 293 SANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLA 372 (673)
Q Consensus 293 ~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~ 372 (673)
+..|+.+++++|+++| ..++..|..|+||||+|+..++.+++++|++.| ++++.+|.+|+||||+|+..|+.++
T Consensus 109 ~~~~~~~~v~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~t~l~~A~~~~~~~~ 182 (192)
T 2rfm_A 109 IIFGYSEMSYFLLEHG---ANVNDRNLEGETPLIVASKYGRSEIVKKLLELG---ADISARDLTGLTAEASARIFGRQEV 182 (192)
T ss_dssp HHHTCHHHHHHHHHTT---CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTT---CCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHHCC---CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC---CCCCCcCCCCCCHHHHHHHhCcHHH
Confidence 8888888888888855 233667778888888888888888888888887 7778888888888888888888888
Q ss_pred HHHHHhcC
Q 005862 373 AAILVWDG 380 (673)
Q Consensus 373 v~~Ll~~~ 380 (673)
+++|++.+
T Consensus 183 v~~Ll~~~ 190 (192)
T 2rfm_A 183 IKIFTEVR 190 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcc
Confidence 88887654
No 60
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.93 E-value=1e-25 Score=211.00 Aligned_cols=169 Identities=18% Similarity=0.209 Sum_probs=129.6
Q ss_pred CCcHHHHHHh-CCccCHHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccchhhhhh
Q 005862 47 ENTLLHIAAA-GSIHDHENMATTLARKYPFLITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLME 125 (673)
Q Consensus 47 g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~~~ll~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~ 125 (673)
+.||||.||. |+ .+++++|+++++..++.+|..|.||||+|+..|+.++|++|+++|++ ++
T Consensus 2 ~~~~L~~A~~~g~----~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--------------~~ 63 (172)
T 3v30_A 2 DSLSIHQLAAQGE----LDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD--------------PH 63 (172)
T ss_dssp --CCHHHHHHTTC----HHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC--------------TT
T ss_pred chhhHHHHHHcCC----HHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--------------ch
Confidence 5689999999 99 99999999999888888999999999999999999999999999877 56
Q ss_pred hcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHHHHHhC
Q 005862 126 MKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYILEAL 205 (673)
Q Consensus 126 ~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~ 205 (673)
.+|..|+||||+|+. .++. +++++|++.+++++ ..|..|.||||+|+..|+.+++++|++.+
T Consensus 64 ~~~~~g~t~L~~A~~-------~~~~----------~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 125 (172)
T 3v30_A 64 ILAKERESALSLAST-------GGYT----------DIVGLLLERDVDIN-IYDWNGGTPLLYAVRGNHVKCVEALLARG 125 (172)
T ss_dssp CCCTTCCCHHHHHHH-------TTCH----------HHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred hhcccCCCHHHHHHH-------CCCH----------HHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 678889999999998 8888 99999999888876 67778888888888888888888888775
Q ss_pred CCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcH
Q 005862 206 PVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTP 254 (673)
Q Consensus 206 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~ 254 (673)
.+. ...+..|.||||.|+..++.+++++|++++ ......+..|.||
T Consensus 126 a~~--~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~-~~~~~~~~~~~~p 171 (172)
T 3v30_A 126 ADL--TTEADSGYTPMDLAVALGYRKVQQVIENHI-LKLFQSNLVPADP 171 (172)
T ss_dssp CCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHHH-HHHSCC-------
T ss_pred CCc--cccCCCCCCHHHHHHHhCcHHHHHHHHHHH-HHHhcccCCCCCC
Confidence 433 244556666666666666666666666666 4444445445444
No 61
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.93 E-value=6.9e-26 Score=216.33 Aligned_cols=162 Identities=20% Similarity=0.245 Sum_probs=108.3
Q ss_pred cccccCCCCCcHHHHHHh-CCccCHHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcc
Q 005862 39 FKTITSPSENTLLHIAAA-GSIHDHENMATTLARKYPFLITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQ 117 (673)
Q Consensus 39 l~~~~~~~g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~~~ll~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~ 117 (673)
+.+.+|..|+||||+|+. |+ .+++++|++++++ ++..|..|.||||+|+..|+.+++++|+++|++
T Consensus 27 ~~n~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------- 93 (192)
T 2rfm_A 27 LRNYRDSYNRTPLMVACMLGM----ENAIDKLVENFDK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-------- 93 (192)
T ss_dssp HHTCCCTTCCCHHHHHHHHTC----GGGHHHHHHHHCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC--------
T ss_pred HHhCcCCCCCCHHHHHHHcCC----HHHHHHHHHhccc-cccccccCccHHHHHHHcCCHHHHHHHHHCCCC--------
Confidence 345567777777777777 77 7777777777665 666777777777777777777777777777665
Q ss_pred cchhhhhhhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHH
Q 005862 118 IDVKGLMEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDI 197 (673)
Q Consensus 118 ~~~~~~~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~i 197 (673)
++.+|..|+||||+|+. .++. +++++|++.+++++ ..|..|.||||+|+..|+.++
T Consensus 94 ------~~~~~~~g~t~L~~A~~-------~~~~----------~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~ 149 (192)
T 2rfm_A 94 ------VNTKDFSGKTPLMWSII-------FGYS----------EMSYFLLEHGANVN-DRNLEGETPLIVASKYGRSEI 149 (192)
T ss_dssp ------TTCCCTTSCCHHHHHHH-------HTCH----------HHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHH
T ss_pred ------CCCCCCCCCcHHHHHHH-------cCCH----------HHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHH
Confidence 45566777777777777 6777 77777777777665 556666666666666666666
Q ss_pred HHHHHHhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHc
Q 005862 198 LKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDK 239 (673)
Q Consensus 198 v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 239 (673)
+++|++.+.+. ...+..|.||||.|+..|+.+++++|++.
T Consensus 150 v~~Ll~~ga~~--~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 189 (192)
T 2rfm_A 150 VKKLLELGADI--SARDLTGLTAEASARIFGRQEVIKIFTEV 189 (192)
T ss_dssp HHHHHHTTCCT--TCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCCCC--CCcCCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence 66666663332 13344555555555555555555555544
No 62
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.93 E-value=2.6e-25 Score=207.22 Aligned_cols=157 Identities=17% Similarity=0.182 Sum_probs=117.5
Q ss_pred CCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHHc
Q 005862 216 EGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASAN 295 (673)
Q Consensus 216 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 295 (673)
.|.||||.|+..|+.++++.|++.+ .+++..|..|.||||+|+..|+.+++++|++++++ ++..|..|.||||.|+..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 79 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQE-NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRESALSLACSK 79 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHS-SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcC-CCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHc
Confidence 3667777777777777777777776 56677777777777777777777777777777766 666777777777777777
Q ss_pred CCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHHH
Q 005862 296 GRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAI 375 (673)
Q Consensus 296 g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~ 375 (673)
|+.+++++|+++| ..++..|..|+||||+|+..++.+++++|++.| ++++.+|.+|+||||+|+..|+.+++++
T Consensus 80 ~~~~~v~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~~~~g~t~l~~A~~~~~~~~~~~ 153 (167)
T 3v31_A 80 GYTDIVKMLLDCG---VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG---ADPTIETDSGYNSMDLAVALGYRSVQQV 153 (167)
T ss_dssp TCHHHHHHHHHHT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred CCHHHHHHHHHCC---CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence 7777777777755 233566777777777777777777777777776 6677777777788888777777777777
Q ss_pred HHhcC
Q 005862 376 LVWDG 380 (673)
Q Consensus 376 Ll~~~ 380 (673)
|++++
T Consensus 154 L~~~~ 158 (167)
T 3v31_A 154 IESHL 158 (167)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 63
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.93 E-value=3.1e-25 Score=207.14 Aligned_cols=158 Identities=23% Similarity=0.258 Sum_probs=124.0
Q ss_pred CCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHH
Q 005862 215 LEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASA 294 (673)
Q Consensus 215 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~ 294 (673)
..+.++|+.|+..|+.+++++|++.+ .+++.+|..|.||||+|+..|+.+++++|++++.+ ++..|..|.||||.|+.
T Consensus 12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~ 89 (169)
T 2y1l_E 12 SDLGKKLLEAARAGRDDEVRILMANG-ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAAL 89 (169)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred CcccchHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHH
Confidence 44566777777777777777777776 56677778888888888888888888888888777 67777888888888888
Q ss_pred cCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHH
Q 005862 295 NGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAA 374 (673)
Q Consensus 295 ~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~ 374 (673)
.|+.+++++|+++| ..++..|..|+||||+|+..++.+++++|++.+ ++++.+|..|+||||+|++.|+.++++
T Consensus 90 ~~~~~~~~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~~~~g~t~l~~A~~~~~~~~~~ 163 (169)
T 2y1l_E 90 FGHLEIVEVLLKNG---ADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG---ADVNAQDKFGKTAFDISIDNGNEDLAE 163 (169)
T ss_dssp TTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHcC---CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCCCcCCCCCCHHHHHHHhCCHHHHH
Confidence 88888888888855 233667778888888888888888888888887 777888888888888888888888888
Q ss_pred HHHhcC
Q 005862 375 ILVWDG 380 (673)
Q Consensus 375 ~Ll~~~ 380 (673)
+|++.|
T Consensus 164 ~L~~~G 169 (169)
T 2y1l_E 164 ILQKLN 169 (169)
T ss_dssp HHHTC-
T ss_pred HHHHcC
Confidence 887653
No 64
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.93 E-value=2e-25 Score=206.67 Aligned_cols=155 Identities=21% Similarity=0.253 Sum_probs=133.0
Q ss_pred CCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHHcC
Q 005862 217 GKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANG 296 (673)
Q Consensus 217 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g 296 (673)
..||||.|+..|+.++++.|++.+ .+++..|..|+||||+|+. |+.+++++|++++++ ++.+|..|.||||.|+..|
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 81 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNN-VNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN-PDLKDRTGFAVIHDAARAG 81 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSC-CCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHT
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCC-CCccccCccCccHHHHHHc-CcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcC
Confidence 567888888888888888888877 6677888889999999888 999999999998887 7788888999999999999
Q ss_pred CHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCCccc-ccccCCCCCcHHHHHHHhCCHHHHHH
Q 005862 297 RVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTL-INEMDDDGNTPLHLAALYGRHLAAAI 375 (673)
Q Consensus 297 ~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~-in~~d~~G~T~Lh~A~~~~~~~~v~~ 375 (673)
+.+++++|+++| ..++.+|..|+||||+|+..|+.+++++|++.+ ++ ++.+|..|+||||+|+..|+.+++++
T Consensus 82 ~~~~v~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ 155 (162)
T 1ihb_A 82 FLDTLQTLLEFQ---ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT---ASNVGHRNHKGDTACDLARLYGRNEVVSL 155 (162)
T ss_dssp CHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS---CCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHcC---CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcc---CCCCCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence 999999999865 334677888999999999999999999999988 44 68888999999999999999999999
Q ss_pred HHhcC
Q 005862 376 LVWDG 380 (673)
Q Consensus 376 Ll~~~ 380 (673)
|+++|
T Consensus 156 Ll~~G 160 (162)
T 1ihb_A 156 MQANG 160 (162)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 99877
No 65
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.93 E-value=1.8e-25 Score=210.92 Aligned_cols=169 Identities=18% Similarity=0.216 Sum_probs=151.1
Q ss_pred CCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHH
Q 005862 215 LEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASA 294 (673)
Q Consensus 215 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~ 294 (673)
..+.++|+.|+..|+.++++.|++.++.+++..|..|.||||+|+..|+.+++++|++++++ ++..|..|.||||+|+.
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~ 81 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAAS 81 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHH
Confidence 45788999999999999999999998788899999999999999999999999999999988 78889999999999999
Q ss_pred cCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHH
Q 005862 295 NGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAA 374 (673)
Q Consensus 295 ~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~ 374 (673)
.|+.+++++|+++| ..++..|..|+||||+|+..++.+++++|++.| ++++.+|.+|+||||+|+..++.++++
T Consensus 82 ~~~~~~v~~Ll~~g---~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~tpl~~A~~~~~~~~~~ 155 (179)
T 3f6q_A 82 HGHRDIVQKLLQYK---ADINAVNEHGNVPLHYACFWGQDQVAEDLVANG---ALVSICNKYGEMPVDKAKAPLRELLRE 155 (179)
T ss_dssp TTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCSSBCCTTSCCGGGGSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHcC---CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCC---CCcchhccCCCCcHHHHHHHHHHHHHH
Confidence 99999999999966 334778899999999999999999999999998 889999999999999999999999999
Q ss_pred HHHhcCCCCccccccCC
Q 005862 375 ILVWDGRANQDIINFHG 391 (673)
Q Consensus 375 ~Ll~~~~~~~~~~n~~G 391 (673)
+|++.+ ++++..+.++
T Consensus 156 ~L~~~g-~~~~~~~~~~ 171 (179)
T 3f6q_A 156 RAEKMG-QNLNRIPYKD 171 (179)
T ss_dssp HHHHTT-CCCSCBCCCC
T ss_pred HHHHhh-cCcccCCccc
Confidence 999887 8888776654
No 66
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.93 E-value=5.6e-28 Score=254.01 Aligned_cols=265 Identities=12% Similarity=0.098 Sum_probs=182.3
Q ss_pred cCCCCCcHHHHHHh-CCccCHHHHHHHHHHhCCcc--ccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccc
Q 005862 43 TSPSENTLLHIAAA-GSIHDHENMATTLARKYPFL--ITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQID 119 (673)
Q Consensus 43 ~~~~g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~~~l--l~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~ 119 (673)
.+.+++||||+||+ |+ .+++++|+++++.. .+..|..|.||||+||..|+.++|++|+++|++..
T Consensus 88 ~g~~~~T~Lh~Aa~~G~----~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~-------- 155 (376)
T 2aja_A 88 KGIKSEVICFVAAITGC----SSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEI-------- 155 (376)
T ss_dssp HTCCHHHHHHHHHHHCC----HHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTH--------
T ss_pred cCCCcCCHHHHHHHcCC----HHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCcc--------
Confidence 45567899999999 99 99999999998621 22345678899999999999999999999986410
Q ss_pred hhhhhhhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCccc-ccCCCCchHHHHHH-HcCCHHH
Q 005862 120 VKGLMEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASY-LKNVDCKSPLYLAV-ESKNEDI 197 (673)
Q Consensus 120 ~~~~~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~-~~~~~g~tpL~~A~-~~g~~~i 197 (673)
..+..+.. .||||+|+. .|+. +++++|+++|+++.. ..|..|.||||+|+ .+|+.++
T Consensus 156 ---~~~i~~~~-~TpLh~Aa~-------~G~~----------eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~ei 214 (376)
T 2aja_A 156 ---MAMIQAEN-YHAFRLAAE-------NGHL----------HVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNV 214 (376)
T ss_dssp ---HHHHSHHH-HHHHHHHHH-------TTCH----------HHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHH
T ss_pred ---ccccCCCC-CCHHHHHHH-------CCCH----------HHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHH
Confidence 01122222 999999999 9999 999999999998763 26778999999999 9999999
Q ss_pred HHHHHHhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHH----------
Q 005862 198 LKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGV---------- 267 (673)
Q Consensus 198 v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v---------- 267 (673)
+++|++.+ ..|.||||.|+..|+.+++++|++.+ ...+..| ++++.|+..|+.+++
T Consensus 215 v~~Ll~~g---------a~~~taL~~Aa~~g~~evv~lL~~~g-a~~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~ 280 (376)
T 2aja_A 215 INFLLDCP---------VMLAYAEIHEFEYGEKYVNPFIARHV-NRLKEMH----DAFKLSNPDGVFDLVTKSECLQGFY 280 (376)
T ss_dssp HHHHTTSH---------HHHHHHHHCTTTTTTTTHHHHHHHHH-HHHHHHH----TTTTTTSSSSCCCCSSHHHHHHHHH
T ss_pred HHHHHhCC---------CccchHHHHHHHCCCHHHHHHHHhcC-ccccccc----HHHHHHHHCCChhhhcHHhhhhhHH
Confidence 99999863 12789999999999999999999998 5554443 467788888876643
Q ss_pred --HHHHhhCCCcccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCC--cccCCCCCCcHHHHHHhcCCHHHHHHHHHh
Q 005862 268 --RFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPP--TELLNTKGQNILHVAAKKGKSDTVRRILKA 343 (673)
Q Consensus 268 --~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~--~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~ 343 (673)
+.|+..+. .+..+.+++|++.+.-... .......+.|+||+|+..|+.+++++|++.
T Consensus 281 ~~~~li~~~~-------------------~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~ 341 (376)
T 2aja_A 281 MLRNLIRRND-------------------EVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI 341 (376)
T ss_dssp HHHHHHHHCC-------------------GGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred HHHHHHHcch-------------------hhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcC
Confidence 34444331 1235666777753210000 011233567899999999999999999998
Q ss_pred CCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhc
Q 005862 344 SNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWD 379 (673)
Q Consensus 344 ~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~ 379 (673)
+ ..+|..|+|++.+|-..|+.++++.-+.+
T Consensus 342 ~------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (376)
T 2aja_A 342 P------SVLALTKANNYYINETGGRLDLRAVALEH 371 (376)
T ss_dssp H------HHHHSCC----------------------
T ss_pred h------HHHHHHHHhccccccccccccHHHHHHHH
Confidence 7 56678899999999999999888765543
No 67
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.93 E-value=2.9e-25 Score=206.88 Aligned_cols=155 Identities=23% Similarity=0.284 Sum_probs=144.3
Q ss_pred CCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHH
Q 005862 250 QMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAA 329 (673)
Q Consensus 250 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~ 329 (673)
.|.||||.|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++| ...+..+..|+||||+|+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~~~~g~t~L~~A~ 77 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNG---ADPQLLGKGRESALSLAC 77 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTCCCHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcC---CCCCCcCCCCCcHHHHHH
Confidence 588999999999999999999999977 8889999999999999999999999999965 334677899999999999
Q ss_pred hcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCccccccCCCCHHHHHHhhccccCccc
Q 005862 330 KKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIAKQKSAEINPEF 409 (673)
Q Consensus 330 ~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~G~T~l~~a~~~~~~~~~~~ 409 (673)
..++.+++++|++.+ ++++.+|.+|+||||+|+..|+.+++++|++.+ ++++.+|..|+||+|+|+..++.+++++
T Consensus 78 ~~~~~~~v~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~ 153 (167)
T 3v31_A 78 SKGYTDIVKMLLDCG---VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG-ADPTIETDSGYNSMDLAVALGYRSVQQV 153 (167)
T ss_dssp HHTCHHHHHHHHHHT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HcCCHHHHHHHHHCC---CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence 999999999999998 889999999999999999999999999999987 9999999999999999999998888776
Q ss_pred cCC
Q 005862 410 FGN 412 (673)
Q Consensus 410 l~~ 412 (673)
|.+
T Consensus 154 L~~ 156 (167)
T 3v31_A 154 IES 156 (167)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 68
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.93 E-value=2.9e-25 Score=207.37 Aligned_cols=158 Identities=27% Similarity=0.420 Sum_probs=144.7
Q ss_pred CCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCCcHHH
Q 005862 247 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILH 326 (673)
Q Consensus 247 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh 326 (673)
....+.++|+.|+..|+.+++++|++++.+ ++..|.+|.||||.|+..|+.+++++|+++| ..++..|..|+||||
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~~~~g~t~L~ 85 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIVEVLLKNG---ADVNAVDHAGMTPLR 85 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHH
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCCccCCCCCCHHH
Confidence 445678999999999999999999999988 7889999999999999999999999999966 334778899999999
Q ss_pred HHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCccccccCCCCHHHHHHhhccccC
Q 005862 327 VAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIAKQKSAEIN 406 (673)
Q Consensus 327 ~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~G~T~l~~a~~~~~~~~ 406 (673)
+|+..++.+++++|++.+ ++++.+|.+|+||||+|+..|+.+++++|++++ ++++.+|..|.||+|+|+..++.++
T Consensus 86 ~A~~~~~~~~~~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~ 161 (169)
T 2y1l_E 86 LAALFGHLEIVEVLLKNG---ADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG-ADVNAQDKFGKTAFDISIDNGNEDL 161 (169)
T ss_dssp HHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHcC---CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHhCCHHH
Confidence 999999999999999998 889999999999999999999999999999987 9999999999999999999998888
Q ss_pred ccccCC
Q 005862 407 PEFFGN 412 (673)
Q Consensus 407 ~~~l~~ 412 (673)
+++|.+
T Consensus 162 ~~~L~~ 167 (169)
T 2y1l_E 162 AEILQK 167 (169)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 877643
No 69
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.92 E-value=5.4e-25 Score=201.86 Aligned_cols=147 Identities=22% Similarity=0.229 Sum_probs=73.2
Q ss_pred cHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcC
Q 005862 253 TPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKG 332 (673)
Q Consensus 253 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~ 332 (673)
++||.|+..|+.+++++|++.+++ .+ .+..|.||||.|+..|+.+++++|+++| ..++..+..|+||||+|+..+
T Consensus 4 ~~L~~A~~~g~~~~v~~Ll~~g~~-~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~ 78 (153)
T 1awc_B 4 KKLLEAARAGQDDEVRILMANGAP-FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAG---VSRDARTKVDRTPLHMAASEG 78 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTCC-CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTT---CCTTCCCTTCCCHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHcCCC-CC-cCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCCCCCCCCCCHHHHHHHcC
Confidence 445555555555555555555443 11 3444555555555555555555555433 112344444555555555555
Q ss_pred CHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCccccccCCCCHHHHHHhhccccCcc
Q 005862 333 KSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIAKQKSAEINPE 408 (673)
Q Consensus 333 ~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~G~T~l~~a~~~~~~~~~~ 408 (673)
+.+++++|++.+ ++++.+|.+|+||||+|+..|+.+++++|++.| ++++.+|..|+||+|+|+..++.++++
T Consensus 79 ~~~~v~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~ 150 (153)
T 1awc_B 79 HANIVEVLLKHG---ADVNAKDMLKMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGNEDLAE 150 (153)
T ss_dssp CHHHHHHHHTTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHcC---CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHH
Confidence 555555555554 445555555555555555555555555555443 555555555555555555555444443
No 70
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.92 E-value=8.1e-25 Score=202.60 Aligned_cols=157 Identities=18% Similarity=0.213 Sum_probs=123.7
Q ss_pred CCCCcHHHHHHh-CCccCHHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccchhhh
Q 005862 45 PSENTLLHIAAA-GSIHDHENMATTLARKYPFLITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGL 123 (673)
Q Consensus 45 ~~g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~~~ll~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~ 123 (673)
+...|+||.|+. |+ .+++++|++++++ ++.+|..|.||||+|+. |+.+++++|+++|++
T Consensus 3 ~~~~~~L~~A~~~g~----~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-------------- 62 (162)
T 1ihb_A 3 EPWGNELASAAARGD----LEQLTSLLQNNVN-VNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN-------------- 62 (162)
T ss_dssp --CHHHHHHHHHHTC----HHHHHHHTTSCCC-TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC--------------
T ss_pred chHhhHHHHHHHcCC----HHHHHHHHhCCCC-ccccCccCccHHHHHHc-CcHHHHHHHHHcCCC--------------
Confidence 346799999999 99 9999999998877 78889999999999999 999999999999877
Q ss_pred hhhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHHHHH
Q 005862 124 MEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYILE 203 (673)
Q Consensus 124 ~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~ 203 (673)
++.+|..|+||||+|+. .++. +++++|++.+++++ .+|..|.||||+|+..|+.+++++|++
T Consensus 63 ~~~~~~~g~t~L~~A~~-------~~~~----------~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 124 (162)
T 1ihb_A 63 PDLKDRTGFAVIHDAAR-------AGFL----------DTLQTLLEFQADVN-IEDNEGNLPLHLAAKEGHLRVVEFLVK 124 (162)
T ss_dssp TTCCCTTSCCHHHHHHH-------HTCH----------HHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHH-------cCCH----------HHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 56678899999999998 8888 99999999888876 577788888888888888888888887
Q ss_pred hCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcC
Q 005862 204 ALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQ 240 (673)
Q Consensus 204 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 240 (673)
++.... ...+..|.||||+|+..|+.+++++|+++|
T Consensus 125 ~g~~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 160 (162)
T 1ihb_A 125 HTASNV-GHRNHKGDTACDLARLYGRNEVVSLMQANG 160 (162)
T ss_dssp HSCCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred ccCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence 754321 234455556666666666666666655555
No 71
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.92 E-value=3.7e-25 Score=205.71 Aligned_cols=158 Identities=23% Similarity=0.296 Sum_probs=116.4
Q ss_pred CCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHH
Q 005862 215 LEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASA 294 (673)
Q Consensus 215 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~ 294 (673)
..+.++||.|+..|+.++++.|++.++...+..+..|.||||+|+..|+.+++++|++++.+ ++..|.+|.||||+|+.
T Consensus 6 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~ 84 (165)
T 3twr_A 6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNACS 84 (165)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred chhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC-CCccCCCCCCHHHHHHH
Confidence 44566677777777777777766665566666677777777777777777777777777776 66777777788888888
Q ss_pred cCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHH
Q 005862 295 NGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAA 374 (673)
Q Consensus 295 ~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~ 374 (673)
.|+.+++++|+++| ..++..|..|+||||+|+.+++.+++++|++.| ++++.+|.+|+||||+|++ ++.++++
T Consensus 85 ~~~~~~v~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~t~l~~a~~-~~~~i~~ 157 (165)
T 3twr_A 85 YGHYEVAELLVKHG---AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG---ADPTKKNRDGNTPLDLVKD-GDTDIQD 157 (165)
T ss_dssp TTCHHHHHHHHHTT---CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCTGGGSCT-TCHHHHH
T ss_pred cCcHHHHHHHHhCC---CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCcccCCCCCChhHhHhc-CChHHHH
Confidence 88888888888755 233566777888888888888888888888777 6777788888888888666 7778888
Q ss_pred HHHhcC
Q 005862 375 ILVWDG 380 (673)
Q Consensus 375 ~Ll~~~ 380 (673)
+|++.|
T Consensus 158 ~L~~~g 163 (165)
T 3twr_A 158 LLRGDA 163 (165)
T ss_dssp HHHTC-
T ss_pred HHhhcc
Confidence 777655
No 72
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.92 E-value=1.6e-24 Score=198.67 Aligned_cols=150 Identities=15% Similarity=0.193 Sum_probs=119.6
Q ss_pred CcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHHcCC
Q 005862 218 KSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGR 297 (673)
Q Consensus 218 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~ 297 (673)
.++|+.|+..|+.+++++|++.+. +.+ .|..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||.|+..|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~-~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~ 79 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGA-PFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEGH 79 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTC-CCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTC
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCC-CCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCh
Confidence 467777777777777777777773 333 467788888888888888888888888777 67778888888888888888
Q ss_pred HHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHHHH
Q 005862 298 VRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAIL 376 (673)
Q Consensus 298 ~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~L 376 (673)
.+++++|+++| ..++.+|..|+||||+|+.+++.+++++|++.| ++++.+|.+|+||||+|+..|+.+++++|
T Consensus 80 ~~~v~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 80 ANIVEVLLKHG---ADVNAKDMLKMTALHWATEHNHQEVVELLIKYG---ADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHHHTTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcC---CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 88888888855 233667788888888888888888888888887 77888888888888888888888888776
No 73
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.92 E-value=1.8e-24 Score=198.90 Aligned_cols=153 Identities=16% Similarity=0.136 Sum_probs=112.6
Q ss_pred CCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHHcC
Q 005862 217 GKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANG 296 (673)
Q Consensus 217 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g 296 (673)
+.|+||.|+..|+.++++.|++..+.+++..|..|.||||+ +..|+.+++++|++++++ ++.+|..|.||||.|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS-PNVQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcC
Confidence 34667777777777777777776445666777777777777 777777777777777776 6677777777777777777
Q ss_pred CHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHHHH
Q 005862 297 RVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAIL 376 (673)
Q Consensus 297 ~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~L 376 (673)
+.+++++|+++| ..++..|..|+||||+|+.+|+.+++++|++. ++++.+|.+|+||||+|+..|+.+++++|
T Consensus 80 ~~~~v~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----~~~~~~~~~g~t~l~~A~~~~~~~~v~~L 152 (156)
T 1bd8_A 80 FLDTLKVLVEHG---ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE----SDLHRRDARGLTPLELALQRGAQDLVDIL 152 (156)
T ss_dssp CHHHHHHHHHTT---CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT----SCTTCCCTTSCCHHHHHHHSCCHHHHHHH
T ss_pred cHHHHHHHHHcC---CCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc----cCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence 777777777754 23356677777788888777777777777766 44677777788888888888888887777
Q ss_pred Hh
Q 005862 377 VW 378 (673)
Q Consensus 377 l~ 378 (673)
++
T Consensus 153 l~ 154 (156)
T 1bd8_A 153 QG 154 (156)
T ss_dssp HT
T ss_pred Hh
Confidence 75
No 74
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.92 E-value=5.3e-27 Score=230.59 Aligned_cols=198 Identities=13% Similarity=0.064 Sum_probs=159.3
Q ss_pred HHHHHhCCCCC-cccccCCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCc
Q 005862 199 KYILEALPVND-DCATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDS 277 (673)
Q Consensus 199 ~~Ll~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~ 277 (673)
+.|++.+.... ....+..+.||||.|+..|+.+++++|++.+ .+++.+|..|+||||+|+..|+.+++++|++.+++
T Consensus 2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~- 79 (229)
T 2vge_A 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEM-NDPSQPNEEGITALHNAICGANYSIVDFLITAGAN- 79 (229)
T ss_dssp --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHS-SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-
Confidence 44555533322 2244556777888888888888888888887 67888899999999999999999999999999988
Q ss_pred ccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCC-CCCCcHHHHH--HhcCCHHHHHHHHHhCCCcccccccC
Q 005862 278 VLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLN-TKGQNILHVA--AKKGKSDTVRRILKASNIDTLINEMD 354 (673)
Q Consensus 278 ~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d-~~g~t~Lh~A--~~~~~~~iv~~Ll~~~~~~~~in~~d 354 (673)
++..|..|.||||+|+..|+.+++++|+++|. + ++..+ ..|+||||+| +..++.+++++|++.| ++++.+|
T Consensus 80 ~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga--~-~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~g---a~~~~~~ 153 (229)
T 2vge_A 80 VNSPDSHGWTPLHCAASCNDTVICMALVQHGA--A-IFATTLSDGATAFEKCDPYREGYADCATYLADVE---QSMGLMN 153 (229)
T ss_dssp TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC--C-TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHH---HHTTTSG
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC--C-cccccCCCCCCHHHHHHHHhcChHHHHHHHHHcC---CCccccc
Confidence 78899999999999999999999999999653 3 34454 6899999999 9999999999999999 8899999
Q ss_pred CCCCcHHHHHHHhCCHHHHHHHHhcCCCC--ccccccCCCCHHHHHHhhccccCcc
Q 005862 355 DDGNTPLHLAALYGRHLAAAILVWDGRAN--QDIINFHGQTAYSIAKQKSAEINPE 408 (673)
Q Consensus 355 ~~G~T~Lh~A~~~~~~~~v~~Ll~~~~~~--~~~~n~~G~T~l~~a~~~~~~~~~~ 408 (673)
..|.||+|.++..... ++|++.+ ++ ++.+|.+|+||||+|+..|+.++++
T Consensus 154 ~~~~~~l~~~~~~~~~---~~ll~~g-a~~~~~~~d~~G~TpL~~A~~~g~~~~v~ 205 (229)
T 2vge_A 154 SGAVYALWDYSAEFGD---ELSFREG-ESVTVLRRDGPEETDWWWAALHGQEGYVP 205 (229)
T ss_dssp GGEEEESSCBCCSSTT---BCCBCTT-CEEEEEESSCTTCSSEEEEEETTEEEEEE
T ss_pred CCchHHHHHHhhcccc---ccCcccc-ccccccccCCCcccHHHHHHHcCCcceee
Confidence 9999999976554432 4566555 67 7788999999999999999888774
No 75
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.92 E-value=2.9e-25 Score=206.45 Aligned_cols=159 Identities=21% Similarity=0.258 Sum_probs=143.5
Q ss_pred CCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCCcHHH
Q 005862 247 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILH 326 (673)
Q Consensus 247 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh 326 (673)
.|.+|.||||.|+..|+.++++.|++.+.......+..|.||||.|+..|+.+++++|+++| ..++.+|..|+||||
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~~~~g~t~L~ 80 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG---ADVHAKDKGGLVPLH 80 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcC---CCCCccCCCCCCHHH
Confidence 46778999999999999999999999877667888899999999999999999999999966 334778899999999
Q ss_pred HHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCccccccCCCCHHHHHHhhccccC
Q 005862 327 VAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIAKQKSAEIN 406 (673)
Q Consensus 327 ~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~G~T~l~~a~~~~~~~~ 406 (673)
+|+..++.+++++|++.+ ++++.+|..|+||||+|+..|+.+++++|++.+ ++++.+|.+|+||+|+|.. ++.++
T Consensus 81 ~A~~~~~~~~v~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~a~~-~~~~i 155 (165)
T 3twr_A 81 NACSYGHYEVAELLVKHG---AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG-ADPTKKNRDGNTPLDLVKD-GDTDI 155 (165)
T ss_dssp HHHHTTCHHHHHHHHHTT---CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTGGGSCT-TCHHH
T ss_pred HHHHcCcHHHHHHHHhCC---CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCChhHhHhc-CChHH
Confidence 999999999999999998 889999999999999999999999999999987 9999999999999999877 67777
Q ss_pred ccccCCc
Q 005862 407 PEFFGND 413 (673)
Q Consensus 407 ~~~l~~~ 413 (673)
+++|.+.
T Consensus 156 ~~~L~~~ 162 (165)
T 3twr_A 156 QDLLRGD 162 (165)
T ss_dssp HHHHHTC
T ss_pred HHHHhhc
Confidence 7766543
No 76
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.92 E-value=2.2e-24 Score=203.47 Aligned_cols=166 Identities=16% Similarity=0.130 Sum_probs=134.0
Q ss_pred CCCCCcHHHHHHh-CCccCHHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccchhh
Q 005862 44 SPSENTLLHIAAA-GSIHDHENMATTLARKYPFLITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKG 122 (673)
Q Consensus 44 ~~~g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~~~ll~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~ 122 (673)
++++.++||.|+. |+ .+++++|+++++..++..|..|.||||+|+..|+.++|++|+++|++
T Consensus 2 ~~~~~~~l~~A~~~g~----~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------- 64 (179)
T 3f6q_A 2 SPEFMDDIFTQCREGN----AVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR------------- 64 (179)
T ss_dssp -----CCHHHHHHHTC----HHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-------------
T ss_pred CHHHHHHHHHHHHcCC----HHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-------------
Confidence 4568899999999 99 99999999998777899999999999999999999999999999877
Q ss_pred hhhhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHHHH
Q 005862 123 LMEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYIL 202 (673)
Q Consensus 123 ~~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll 202 (673)
++.+|..|+||||+|+. .++. +++++|++.+++++ ..|..|.||||+|+..|+.+++++|+
T Consensus 65 -~~~~~~~g~t~L~~A~~-------~~~~----------~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll 125 (179)
T 3f6q_A 65 -INVMNRGDDTPLHLAAS-------HGHR----------DIVQKLLQYKADIN-AVNEHGNVPLHYACFWGQDQVAEDLV 125 (179)
T ss_dssp -TTCCCTTCCCHHHHHHH-------TTCH----------HHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred -CCCcCCCCCCHHHHHHH-------cCCH----------HHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 56788899999999999 8998 99999999998887 67788888888888888888888888
Q ss_pred HhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCC
Q 005862 203 EALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQD 248 (673)
Q Consensus 203 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d 248 (673)
+++.+. ...+..|.|||+.|+..++.+++++|++.+ .+++..+
T Consensus 126 ~~ga~~--~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g-~~~~~~~ 168 (179)
T 3f6q_A 126 ANGALV--SICNKYGEMPVDKAKAPLRELLRERAEKMG-QNLNRIP 168 (179)
T ss_dssp HTTCCS--SBCCTTSCCGGGGSCHHHHHHHHHHHHHTT-CCCSCBC
T ss_pred HCCCCc--chhccCCCCcHHHHHHHHHHHHHHHHHHhh-cCcccCC
Confidence 875443 245666777777777777777777777776 4444333
No 77
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.91 E-value=4.4e-24 Score=196.37 Aligned_cols=153 Identities=17% Similarity=0.209 Sum_probs=122.3
Q ss_pred CCcHHHHHHh-CCccCHHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccchhhhhh
Q 005862 47 ENTLLHIAAA-GSIHDHENMATTLARKYPFLITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLME 125 (673)
Q Consensus 47 g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~~~ll~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~ 125 (673)
|.|+||.|+. |+ .+++++|+++.+..++..|..|.||||+ +..|+.+++++|+++|++ ++
T Consensus 2 ~~~~L~~A~~~g~----~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~--------------~~ 62 (156)
T 1bd8_A 2 AGDRLSGAAARGD----VQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS--------------PN 62 (156)
T ss_dssp HHHHHHHHHHHTC----HHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC--------------TT
T ss_pred cchHHHHHHHhCC----HHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC--------------CC
Confidence 5789999999 99 9999999988544578888999999999 889999999999998877 56
Q ss_pred hcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHHHHHhC
Q 005862 126 MKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYILEAL 205 (673)
Q Consensus 126 ~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~ 205 (673)
.+|..|+||||+|+. .++. +++++|++.|++++ .+|..|.||||+|+..|+.+++++|++.
T Consensus 63 ~~~~~g~t~L~~A~~-------~~~~----------~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~- 123 (156)
T 1bd8_A 63 VQDTSGTSPVHDAAR-------TGFL----------DTLKVLVEHGADVN-VPDGTGALPIHLAVQEGHTAVVSFLAAE- 123 (156)
T ss_dssp CCCTTSCCHHHHHHH-------TTCH----------HHHHHHHHTTCCSC-CCCTTSCCHHHHHHHHTCHHHHHHHHTT-
T ss_pred CcCCCCCCHHHHHHH-------cCcH----------HHHHHHHHcCCCCC-CcCCCCCcHHHHHHHhChHHHHHHHHhc-
Confidence 678889999999998 8888 89999999888876 5777888888888888888888888876
Q ss_pred CCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHc
Q 005862 206 PVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDK 239 (673)
Q Consensus 206 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 239 (673)
.+ ....+..|.||||.|+..|+.+++++|+++
T Consensus 124 ~~--~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 124 SD--LHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp SC--TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred cC--CCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 22 224455666666666666666666666653
No 78
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.91 E-value=4.8e-27 Score=230.90 Aligned_cols=186 Identities=16% Similarity=0.088 Sum_probs=102.7
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccchhhhhhhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHH
Q 005862 81 NSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLMEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLL 160 (673)
Q Consensus 81 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~ 160 (673)
+..|.||||+|+..|+.++|++|++.|++ ++.+|..|+||||+|+. .++.
T Consensus 18 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~--------------~~~~d~~g~tpLh~A~~-------~g~~--------- 67 (229)
T 2vge_A 18 RLNPLVLLLDAALTGELEVVQQAVKEMND--------------PSQPNEEGITALHNAIC-------GANY--------- 67 (229)
T ss_dssp TSCHHHHHHHHHHHTCHHHHHHHHHHSSC--------------TTCCCTTSCCHHHHHHH-------TTCH---------
T ss_pred ccchhHHHHHHHHcCCHHHHHHHHhcCCC--------------CCCCCCCCCCHHHHHHH-------cCCH---------
Confidence 33444556666666666666666665554 34455566666666665 5555
Q ss_pred HHHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCcccccCCCCcHHHHH--HHhCcHHHHHHHHH
Q 005862 161 VSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVKVA--IELQKLGLLKMMHD 238 (673)
Q Consensus 161 ~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~ 238 (673)
+++++|++.|++++ ..|..|.||||+|+..|+.+++++|++.+.+... ..+..|.||||.| +..++.+++++|++
T Consensus 68 -~~v~~Ll~~ga~~n-~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~ 144 (229)
T 2vge_A 68 -SIVDFLITAGANVN-SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFA-TTLSDGATAFEKCDPYREGYADCATYLAD 144 (229)
T ss_dssp -HHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC-CCSSTTCCTGGGCCTTSTTHHHHHHHHHH
T ss_pred -HHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-ccCCCCCCHHHHHHHHhcChHHHHHHHHH
Confidence 66666666655554 4455556666666666666666666655333221 1123455555555 55555566666665
Q ss_pred cCCcccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCc-ccccccCCChHHHHHHHcCCHHHHHH
Q 005862 239 KQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDS-VLQRNEEGFYPFHLASANGRVRVMGE 303 (673)
Q Consensus 239 ~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-~~~~d~~g~tpLh~A~~~g~~~iv~~ 303 (673)
.+ .+++..|..|.||++.++..+. .++|++.+++. ++.+|.+|+||||+|+..|+.++++.
T Consensus 145 ~g-a~~~~~~~~~~~~l~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~ 206 (229)
T 2vge_A 145 VE-QSMGLMNSGAVYALWDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPR 206 (229)
T ss_dssp HH-HHTTTSGGGEEEESSCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred cC-CCcccccCCchHHHHHHhhccc---cccCccccccccccccCCCcccHHHHHHHcCCcceeeh
Confidence 55 4555556666666654333322 13445555442 34556666666666666666666654
No 79
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.90 E-value=7.6e-25 Score=216.87 Aligned_cols=179 Identities=11% Similarity=0.062 Sum_probs=120.2
Q ss_pred CCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHH
Q 005862 215 LEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASA 294 (673)
Q Consensus 215 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~ 294 (673)
..|.||||.|+..++.+.++.|++++ .+++. +..|.||||.|+..|+.+++++|++.+++ ++..|..|.||||+|+.
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g-~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~ 79 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHG-MRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVC 79 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccC-CCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHH
Confidence 34778888888888888888888877 44443 36678888888888888888888888886 77888888899999988
Q ss_pred cCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCC-cHHHHH--HHhCCHH
Q 005862 295 NGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGN-TPLHLA--ALYGRHL 371 (673)
Q Consensus 295 ~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~-T~Lh~A--~~~~~~~ 371 (673)
.|+.+++++|+++| ..++.+|..|+||||+|+.+|+.+++++|++.| ++++.+|..|. ||||+| +..|+.+
T Consensus 80 ~g~~~~v~~Ll~~g---a~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~~~~t~l~~a~~~~~g~~~ 153 (239)
T 1ycs_B 80 AGHTEIVKFLVQFG---VNVNAADSDGWTPLHCAASCNNVQVCKFLVESG---AAVFAMTYSDMQTAADKCEEMEEGYTQ 153 (239)
T ss_dssp HTCHHHHHHHHHHT---CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCSSSCCCHHHHCCSSSTTCCC
T ss_pred cCCHHHHHHHHHcC---CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCcceecCCCCcchHHHHHHhhhccHH
Confidence 88889998888865 334777888999999999999999999999888 77888887776 999988 7778889
Q ss_pred HHHHHHhcCCCCcccc---------ccCCCCHHHHHHhhcc
Q 005862 372 AAAILVWDGRANQDII---------NFHGQTAYSIAKQKSA 403 (673)
Q Consensus 372 ~v~~Ll~~~~~~~~~~---------n~~G~T~l~~a~~~~~ 403 (673)
++++|++.+ ++++.. +..|+++.+++.+.|.
T Consensus 154 ~~~~Ll~~~-a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 154 CSQFLYGVQ-EKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHHHHHHHH-HHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHHHHHHhh-hcccccccceEEEEeccCCCCCCcccccCCC
Confidence 999998876 776665 5668888887777664
No 80
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.89 E-value=3e-24 Score=212.63 Aligned_cols=180 Identities=13% Similarity=0.078 Sum_probs=130.3
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHH
Q 005862 179 NVDCKSPLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWA 258 (673)
Q Consensus 179 ~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A 258 (673)
+..|.||||.|+..|+.+.++.|++++.... .+..+.||||.|+..|+.++++.|++.+ .+++.+|..|.||||+|
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~---~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A 77 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVK---FNPLPLALLLDSSLEGEFDLVQRIIYEV-DDPSLPNDEGITALHNA 77 (239)
T ss_dssp --------------------------------------CHHHHHHHHHHTCHHHHHHHTSTT-SSCCCCCTTSCCHHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCcc---cCchhhHHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHH
Confidence 3468999999999999999999999966553 2467899999999999999999999999 68999999999999999
Q ss_pred HHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCC-cHHHHH--HhcCCHH
Q 005862 259 ASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQ-NILHVA--AKKGKSD 335 (673)
Q Consensus 259 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~-t~Lh~A--~~~~~~~ 335 (673)
+..|+.+++++|++++++ ++.+|.+|+||||+|+..|+.+++++|+++|. .++..+..|. ||||+| +..|+.+
T Consensus 78 ~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga---~~~~~~~~~~~t~l~~a~~~~~g~~~ 153 (239)
T 1ycs_B 78 VCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESGA---AVFAMTYSDMQTAADKCEEMEEGYTQ 153 (239)
T ss_dssp HHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCSSSCCCHHHHCCSSSTTCCC
T ss_pred HHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC---CcceecCCCCcchHHHHHHhhhccHH
Confidence 999999999999999998 88999999999999999999999999999663 3356666666 999999 8889999
Q ss_pred HHHHHHHhCCCccccccc---------CCCCCcHHHHHHHhCC
Q 005862 336 TVRRILKASNIDTLINEM---------DDDGNTPLHLAALYGR 369 (673)
Q Consensus 336 iv~~Ll~~~~~~~~in~~---------d~~G~T~Lh~A~~~~~ 369 (673)
++++|++.+ ++++.. |..|.++++++.+.|.
T Consensus 154 ~~~~Ll~~~---a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 154 CSQFLYGVQ---EKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHHHHHHHH---HHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHHHHHHhh---hcccccccceEEEEeccCCCCCCcccccCCC
Confidence 999999998 555544 6778999999988775
No 81
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.89 E-value=2.7e-23 Score=191.20 Aligned_cols=146 Identities=21% Similarity=0.136 Sum_probs=114.9
Q ss_pred cccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCCc
Q 005862 244 LLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQN 323 (673)
Q Consensus 244 ~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t 323 (673)
....+..|.||||+|+..|+.+++++|++++.+ ++..|..|.||||+|+ .|+.+++++|+++| ..++.+|..|+|
T Consensus 5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g---~~~~~~d~~g~t 79 (156)
T 1bi7_B 5 AGSSMEPSADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHG---AEPNCADPATLT 79 (156)
T ss_dssp -----CCSTTHHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTT---CCCCCCCTTTCC
T ss_pred ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcC---CCCCCcCCCCCc
Confidence 345678899999999999999999999999887 7888999999999985 89999999999965 344778899999
Q ss_pred -HHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCccccccCCCCHHHHH
Q 005862 324 -ILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIA 398 (673)
Q Consensus 324 -~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~G~T~l~~a 398 (673)
|||+|+..|+.+++++|++.| ++++.+|.+|+||||+|+..|+.+++++|+++| ++++.+|..|.||.+-+
T Consensus 80 tpL~~A~~~~~~~~v~~Ll~~g---a~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 80 RPVHDAAREGFLDTLVVLHRAG---ARLDVRDAWGRLPVDLAEELGHRDVARYLRAAA-GGTRGSNHARIDAAEGP 151 (156)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHT---CCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred HHHHHHHHCCCHHHHHHHHHcC---CCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcC-CCCCccCcCcCcccccC
Confidence 999999999999999999998 889999999999999999999999999999887 99999999999998744
No 82
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.88 E-value=1.1e-22 Score=182.42 Aligned_cols=131 Identities=21% Similarity=0.184 Sum_probs=116.1
Q ss_pred cccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCC-
Q 005862 242 ALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTK- 320 (673)
Q Consensus 242 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~- 320 (673)
.+++..|..|.||||+|+..|+.+++++|++++.+ ++.+|..|.||||+|+. |+.+++++|+++|. .++.+|..
T Consensus 3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~---~~~~~~~~~ 77 (136)
T 1d9s_A 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLLHGA---EPNCADPAT 77 (136)
T ss_dssp CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTC---CSSCCBTTT
T ss_pred CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCC---CCCCcCCCC
Confidence 56778888999999999999999999999999887 77888999999999999 99999999999663 34677888
Q ss_pred CCcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhcC
Q 005862 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380 (673)
Q Consensus 321 g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~ 380 (673)
|+||||+|+..++.+++++|++.+ ++++.+|.+|+||||+|+..++.+++++|+++|
T Consensus 78 g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G 134 (136)
T 1d9s_A 78 LTRPVHDAAREGFLDTLVVLHRAG---ARLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134 (136)
T ss_dssp TBCHHHHHHHHTCHHHHHHHHHTC---CCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcC---CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 899999999999999999999988 788999999999999999999999999999876
No 83
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.87 E-value=6.7e-23 Score=194.07 Aligned_cols=152 Identities=14% Similarity=0.038 Sum_probs=93.0
Q ss_pred CcHHHHHHHhCcHHHHHHHHHcCCcccccCC-CCCCcHHHHHHHCCCH----HHHHHHHhhCCCcccccccCCChHHHHH
Q 005862 218 KSPVKVAIELQKLGLLKMMHDKQPALLLIQD-EQMNTPMHWAASVDHL----EGVRFLYEINPDSVLQRNEEGFYPFHLA 292 (673)
Q Consensus 218 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~g~~----~~v~~Ll~~~~~~~~~~d~~g~tpLh~A 292 (673)
.++|+.|++.|+.+.++.+++.+. +..+ ..|+||||+|+..|+. +++++|+++|++ ++.+|.+|+||||+|
T Consensus 7 ~~~l~~Aa~~g~~~~~~~l~~~~~---~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~TpLh~a 82 (186)
T 3t8k_A 7 YRTVSAAAMLGTYEDFLELFEKGY---EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD-IKSRTKEGTTLFFPL 82 (186)
T ss_dssp CSSHHHHHHHSCHHHHHHHHHHSS---SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-SSCCCTTCCCTHHHH
T ss_pred ccHHHHHHHcCCHHHHHHHHhcCc---ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-CCCCCCCCCcHHHHH
Confidence 455666666666666666555542 2222 4566666666666653 366666666666 566666666666666
Q ss_pred HHcCC------HHHHHHHHhccCCCCCcccCCCCCC-cHHHHHHhcC-----CHHHHHHHHH-hCCCcccccccCCCCCc
Q 005862 293 SANGR------VRVMGEFFEKENMPPPTELLNTKGQ-NILHVAAKKG-----KSDTVRRILK-ASNIDTLINEMDDDGNT 359 (673)
Q Consensus 293 ~~~g~------~~iv~~Ll~~~~~~~~~~~~d~~g~-t~Lh~A~~~~-----~~~iv~~Ll~-~~~~~~~in~~d~~G~T 359 (673)
+..|+ .++++.|+++| ..++.+|..|+ ||||+|+..+ ..+++++|++ .| +++|.+|.+|+|
T Consensus 83 ~~~~~~~~~~~~~iv~~Ll~~G---adin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~g---ad~~~~d~~G~T 156 (186)
T 3t8k_A 83 FQGGGNDITGTTELCKIFLEKG---ADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSG---LQLLIKDKWGLT 156 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTT---CCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTT---CCTTCCCTTSCC
T ss_pred HHcCCcchhhHHHHHHHHHHCC---CCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcC---CCCcccCCCCCC
Confidence 66654 45666666654 23355666666 6666666633 2356666776 55 666777777777
Q ss_pred HHHHHHHhCCHHHHHHHHhc
Q 005862 360 PLHLAALYGRHLAAAILVWD 379 (673)
Q Consensus 360 ~Lh~A~~~~~~~~v~~Ll~~ 379 (673)
|||+|++.++.+++++|...
T Consensus 157 pL~~A~~~~~~~~v~~L~~~ 176 (186)
T 3t8k_A 157 ALEFVKRCQKPIALKMMEDY 176 (186)
T ss_dssp HHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 77777777777777666644
No 84
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.87 E-value=3.8e-22 Score=178.91 Aligned_cols=128 Identities=20% Similarity=0.151 Sum_probs=117.8
Q ss_pred cccCCCCCcHHHHHHh-CCccCHHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccc
Q 005862 41 TITSPSENTLLHIAAA-GSIHDHENMATTLARKYPFLITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQID 119 (673)
Q Consensus 41 ~~~~~~g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~~~ll~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~ 119 (673)
+..+..|.||||+|+. |+ .+++++|++++.+ ++.+|..|.||||+|+. |+.+++++|+++|++
T Consensus 6 ~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~---------- 69 (136)
T 1d9s_A 6 HMLGGSSDAGLATAAARGQ----VETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE---------- 69 (136)
T ss_dssp SCCCCCCSCHHHHHHHTTC----HHHHHHHHHTTCC-TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC----------
T ss_pred cCCCCCCccHHHHHHHcCC----HHHHHHHHHcCCC-cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC----------
Confidence 3477889999999999 99 9999999999887 88999999999999999 999999999999887
Q ss_pred hhhhhhhcCCc-cCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHH
Q 005862 120 VKGLMEMKNVR-GNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDIL 198 (673)
Q Consensus 120 ~~~~~~~~d~~-g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv 198 (673)
++.+|.. |+||||+|+. .++. +++++|++.+++++ .+|..|.||||+|+..|+.+++
T Consensus 70 ----~~~~~~~~g~t~L~~A~~-------~~~~----------~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~~ 127 (136)
T 1d9s_A 70 ----PNCADPATLTRPVHDAAR-------EGFL----------DTLVVLHRAGARLD-VCDAWGRLPVDLAEEQGHRDIA 127 (136)
T ss_dssp ----SSCCBTTTTBCHHHHHHH-------HTCH----------HHHHHHHHTCCCCC-CCSSSSSCHHHHHHHHTCHHHH
T ss_pred ----CCCcCCCCCCCHHHHHHH-------cCCH----------HHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHH
Confidence 5678888 9999999999 9999 99999999999987 7888999999999999999999
Q ss_pred HHHHHhCC
Q 005862 199 KYILEALP 206 (673)
Q Consensus 199 ~~Ll~~~~ 206 (673)
++|++++.
T Consensus 128 ~~Ll~~Ga 135 (136)
T 1d9s_A 128 RYLHAATG 135 (136)
T ss_dssp HHHHHHHC
T ss_pred HHHHHcCC
Confidence 99998743
No 85
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.86 E-value=9.4e-22 Score=180.85 Aligned_cols=143 Identities=10% Similarity=0.051 Sum_probs=111.6
Q ss_pred ccCCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCCh-HHHH
Q 005862 213 TKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFY-PFHL 291 (673)
Q Consensus 213 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t-pLh~ 291 (673)
.+..|.||||.|+..|+.+++++|++++ .+++..|..|+||||+|+ .|+.+++++|++++++ ++.+|..|.| |||+
T Consensus 8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~g~ttpL~~ 84 (156)
T 1bi7_B 8 SMEPSADWLATAAARGRVEEVRALLEAG-ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRPVHD 84 (156)
T ss_dssp --CCSTTHHHHHHHHTCHHHHHHHHTTT-CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCHHHH
T ss_pred CCccchHHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHH
Confidence 4566889999999999999999999887 678888999999999985 8999999999999888 7889999998 9999
Q ss_pred HHHcCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHH
Q 005862 292 ASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLA 364 (673)
Q Consensus 292 A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A 364 (673)
|+..|+.+++++|+++| ..++.+|..|+||||+|+..++.+++++|++.| ++++.+|..|.||.+-+
T Consensus 85 A~~~~~~~~v~~Ll~~g---a~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 85 AAREGFLDTLVVLHRAG---ARLDVRDAWGRLPVDLAEELGHRDVARYLRAAA---GGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHTCHHHHHHHHHHT---CCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC--------------------
T ss_pred HHHCCCHHHHHHHHHcC---CCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcC---CCCCccCcCcCcccccC
Confidence 99999999999999976 334778889999999999999999999999998 88999999999988744
No 86
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.86 E-value=2.2e-21 Score=173.89 Aligned_cols=125 Identities=18% Similarity=0.213 Sum_probs=114.2
Q ss_pred cCCCCCcHHHHHHh-CCccCHHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccchh
Q 005862 43 TSPSENTLLHIAAA-GSIHDHENMATTLARKYPFLITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVK 121 (673)
Q Consensus 43 ~~~~g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~~~ll~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~ 121 (673)
....|.|+||.||. |+ .+++++|++++++ ++..|..|.||||+|+..|+.+++++|+++|++
T Consensus 10 ~~~~~~t~l~~A~~~g~----~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------ 72 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQ----DDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD------------ 72 (136)
T ss_dssp --CHHHHHHHHHHHHTC----HHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------------
T ss_pred ccccccHHHHHHHHhCC----HHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------
Confidence 45568999999999 99 9999999999887 888999999999999999999999999999887
Q ss_pred hhhhhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 005862 122 GLMEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYI 201 (673)
Q Consensus 122 ~~~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~L 201 (673)
++.+|..|+||||+|+. .++. +++++|++++++++ ..|..|.||||+|+..|+.+++++|
T Consensus 73 --~~~~d~~g~t~L~~A~~-------~~~~----------~~v~~Ll~~g~~~~-~~~~~g~tpl~~A~~~~~~~~~~~L 132 (136)
T 2jab_A 73 --VNAVDAIGFTPLHLAAF-------IGHL----------EIAEVLLKHGADVN-AQDKFGKTAFDISIGNGNEDLAEIL 132 (136)
T ss_dssp --TTCCCTTCCCHHHHHHH-------HTCH----------HHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred --CCcCCCCCCCHHHHHHH-------cCCH----------HHHHHHHHcCCCCc-CcCCCCCCHHHHHHHCCCHHHHHHH
Confidence 67788999999999999 9999 99999999999887 6888999999999999999999999
Q ss_pred HHh
Q 005862 202 LEA 204 (673)
Q Consensus 202 l~~ 204 (673)
++.
T Consensus 133 l~~ 135 (136)
T 2jab_A 133 QKL 135 (136)
T ss_dssp HHC
T ss_pred HHc
Confidence 875
No 87
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.85 E-value=7.3e-21 Score=167.51 Aligned_cols=124 Identities=35% Similarity=0.550 Sum_probs=105.2
Q ss_pred CCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHH
Q 005862 250 QMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAA 329 (673)
Q Consensus 250 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~ 329 (673)
+|+||||+|+..|+.+++++|++++.+ ++..|..|.||||.|+..|+.+++++|+++| ..++.+|..|+||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g---~~~~~~~~~g~t~l~~A~ 76 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG---ADVNAKDKNGRTPLHLAA 76 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcC---CCCcccCCCCCcHHHHHH
Confidence 478888888888888888888888877 6778888888888888888888888888855 233667788889999999
Q ss_pred hcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhcC
Q 005862 330 KKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380 (673)
Q Consensus 330 ~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~ 380 (673)
..++.+++++|++.+ .+++.+|.+|+||||+|+..++.+++++|+++|
T Consensus 77 ~~~~~~~~~~Ll~~g---~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 124 (126)
T 1n0r_A 77 RNGHLEVVKLLLEAG---ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124 (126)
T ss_dssp HTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred HcChHHHHHHHHHcC---CCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence 999999999999887 778888889999999999999999999988876
No 88
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.85 E-value=6.8e-21 Score=167.70 Aligned_cols=124 Identities=27% Similarity=0.426 Sum_probs=113.9
Q ss_pred CCCcHHHHHHh-CCccCHHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccchhhhh
Q 005862 46 SENTLLHIAAA-GSIHDHENMATTLARKYPFLITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLM 124 (673)
Q Consensus 46 ~g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~~~ll~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~ 124 (673)
+|+||||.|+. |+ .+++++|++++++ ++..|..|.||||+|+..|+.+++++|+++|++ +
T Consensus 1 ~g~t~L~~A~~~~~----~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--------------~ 61 (126)
T 1n0r_A 1 NGRTPLHLAARNGH----LEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD--------------V 61 (126)
T ss_dssp CCCCHHHHHHHHTC----HHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC--------------T
T ss_pred CCccHHHHHHHcCc----HHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC--------------C
Confidence 48999999999 99 9999999999887 788899999999999999999999999999877 5
Q ss_pred hhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHHHHHh
Q 005862 125 EMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYILEA 204 (673)
Q Consensus 125 ~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~ 204 (673)
+.+|..|+||||+|+. .++. +++++|++.++++. ..|..|.|||++|+..|+.+++++|+++
T Consensus 62 ~~~~~~g~t~l~~A~~-------~~~~----------~~~~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 123 (126)
T 1n0r_A 62 NAKDKNGRTPLHLAAR-------NGHL----------EVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEA 123 (126)
T ss_dssp TCCCTTSCCHHHHHHH-------TTCH----------HHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred cccCCCCCcHHHHHHH-------cChH----------HHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence 6788899999999999 9999 99999999999887 6788999999999999999999999988
Q ss_pred CC
Q 005862 205 LP 206 (673)
Q Consensus 205 ~~ 206 (673)
+.
T Consensus 124 Ga 125 (126)
T 1n0r_A 124 GA 125 (126)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.85 E-value=3.5e-21 Score=172.58 Aligned_cols=127 Identities=24% Similarity=0.307 Sum_probs=102.3
Q ss_pred CCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCCcHHH
Q 005862 247 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILH 326 (673)
Q Consensus 247 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh 326 (673)
....+.||||+|+..|+.+++++|++++.+ ++..|..|.||||.|+..|+.+++++|+++| ..++..|..|+||||
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~d~~g~t~L~ 85 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNG---ADVNAVDAIGFTPLH 85 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT---CCTTCCCTTCCCHHH
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCCcCCCCCCCHHH
Confidence 345577888888888888888888888877 6778888888888888888888888888855 234667788888888
Q ss_pred HHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhcC
Q 005862 327 VAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380 (673)
Q Consensus 327 ~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~ 380 (673)
+|+..++.+++++|++.+ ++++.+|.+|+||||+|+..|+.+++++|++.|
T Consensus 86 ~A~~~~~~~~v~~Ll~~g---~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 86 LAAFIGHLEIAEVLLKHG---ADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHHTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHHHcCCHHHHHHHHHcC---CCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 888888888888888887 778888888888888888888888888888654
No 90
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.85 E-value=8.2e-22 Score=186.54 Aligned_cols=162 Identities=9% Similarity=-0.066 Sum_probs=140.1
Q ss_pred CchHHHHHHHcCCHHHHHHHHHhCCCCCcccccCCCCcHHHHHHHhCcH----HHHHHHHHcCCcccccCCCCCCcHHHH
Q 005862 182 CKSPLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVKVAIELQKL----GLLKMMHDKQPALLLIQDEQMNTPMHW 257 (673)
Q Consensus 182 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~~~~~~~~~d~~g~t~Lh~ 257 (673)
+.++|+.|++.|+.+.++.+++..... ..+..|.||||.|+..++. +++++|+++| .+++.+|..|+||||+
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~---~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~G-advn~~d~~g~TpLh~ 81 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYED---KESVLKSNILYDVLRNNNDEARYKISMFLINKG-ADIKSRTKEGTTLFFP 81 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSC---HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTT-CCSSCCCTTCCCTHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCccc---ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCC-CCCCCCCCCCCcHHHH
Confidence 468899999999999999999884322 2236799999999999875 5999999999 8999999999999999
Q ss_pred HHHCCC------HHHHHHHHhhCCCcccccccCCC-hHHHHHHHcC-----CHHHHHHHHh-ccCCCCCcccCCCCCCcH
Q 005862 258 AASVDH------LEGVRFLYEINPDSVLQRNEEGF-YPFHLASANG-----RVRVMGEFFE-KENMPPPTELLNTKGQNI 324 (673)
Q Consensus 258 A~~~g~------~~~v~~Ll~~~~~~~~~~d~~g~-tpLh~A~~~g-----~~~iv~~Ll~-~~~~~~~~~~~d~~g~t~ 324 (673)
|+..|+ .+++++|+++|++ ++.+|..|. ||||+|+..+ +.++++.|++ +| ..++.+|..|+||
T Consensus 82 a~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~g---ad~~~~d~~G~Tp 157 (186)
T 3t8k_A 82 LFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSG---LQLLIKDKWGLTA 157 (186)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTT---CCTTCCCTTSCCH
T ss_pred HHHcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcC---CCCcccCCCCCCH
Confidence 999887 6889999999999 899999999 9999999954 4579999998 66 4558899999999
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCcccccccC
Q 005862 325 LHVAAKKGKSDTVRRILKASNIDTLINEMD 354 (673)
Q Consensus 325 Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d 354 (673)
||+|++.++.+++++|.+.. ...+.+|
T Consensus 158 L~~A~~~~~~~~v~~L~~~~---~~~~~~~ 184 (186)
T 3t8k_A 158 LEFVKRCQKPIALKMMEDYI---KKYNLKE 184 (186)
T ss_dssp HHHHHTTTCHHHHHHHHHHH---HHHTCCC
T ss_pred HHHHHHcCCHHHHHHHHHHH---HHHhccc
Confidence 99999999999999999886 4445544
No 91
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.83 E-value=4.2e-21 Score=172.22 Aligned_cols=126 Identities=21% Similarity=0.285 Sum_probs=99.0
Q ss_pred ccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCc
Q 005862 280 QRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNT 359 (673)
Q Consensus 280 ~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T 359 (673)
.+|.+|.||||.|+..|+.+++++|+++| ..++..|..|+||||+|+..++.+++++|++.+ ++++.+|..|+|
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g---~~~~~~~~~g~t 78 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNG---SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK---ALVNTTGYQNDS 78 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTT---CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCGGGCC
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC---CcccCcCCCCCC
Confidence 56777888888888888888888888754 233667778888888888888888888888887 777888888888
Q ss_pred HHHHHHHhCCHHHHHHHHhcCCCCccccccCCCCHHHHHHhhccccCccccCC
Q 005862 360 PLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIAKQKSAEINPEFFGN 412 (673)
Q Consensus 360 ~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~G~T~l~~a~~~~~~~~~~~l~~ 412 (673)
|||+|+..|+.+++++|++.+ ++++.+|.+|+||+|+|...+..++++++..
T Consensus 79 ~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~ 130 (137)
T 3c5r_A 79 PLHDAAKNGHVDIVKLLLSYG-ASRNAVNIFGLRPVDYTDDESMKSLLLLPEK 130 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCGGGGCCCHHHHHHHSCC--
T ss_pred HHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHhhccHHHHHhhccc
Confidence 888888888888888888776 8888888888888888887777766666543
No 92
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.82 E-value=8.2e-21 Score=170.35 Aligned_cols=126 Identities=20% Similarity=0.249 Sum_probs=113.5
Q ss_pred ccCCCCCcHHHHHHh-CCccCHHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccch
Q 005862 42 ITSPSENTLLHIAAA-GSIHDHENMATTLARKYPFLITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDV 120 (673)
Q Consensus 42 ~~~~~g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~~~ll~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~ 120 (673)
.+|..|+||||+|+. |+ .+++++|++++++ ++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 5 ~~~~~g~t~L~~A~~~~~----~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----------- 68 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGD----IPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL----------- 68 (137)
T ss_dssp CCCTTCCCHHHHHHHHTC----HHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----------
T ss_pred CcCCCCCCHHHHHHHcCC----HHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-----------
Confidence 468889999999999 99 9999999999887 788999999999999999999999999999877
Q ss_pred hhhhhhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHH
Q 005862 121 KGLMEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKY 200 (673)
Q Consensus 121 ~~~~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~ 200 (673)
++.+|..|+||||+|+. .++. +++++|++.|+++. .+|..|.|||++|+..+..+++++
T Consensus 69 ---~~~~~~~g~t~L~~A~~-------~~~~----------~~v~~Ll~~ga~~~-~~~~~g~tpl~~A~~~~~~~~l~~ 127 (137)
T 3c5r_A 69 ---VNTTGYQNDSPLHDAAK-------NGHV----------DIVKLLLSYGASRN-AVNIFGLRPVDYTDDESMKSLLLL 127 (137)
T ss_dssp ---TTCCCGGGCCHHHHHHH-------TTCH----------HHHHHHHHTTCCTT-CCCTTSCCGGGGCCCHHHHHHHSC
T ss_pred ---ccCcCCCCCCHHHHHHH-------cCCH----------HHHHHHHHcCCCCC-CCCCCCCCHHHHHhhccHHHHHhh
Confidence 67789999999999999 9999 99999999999987 789999999999999888888887
Q ss_pred HHHh
Q 005862 201 ILEA 204 (673)
Q Consensus 201 Ll~~ 204 (673)
|.+.
T Consensus 128 l~~~ 131 (137)
T 3c5r_A 128 PEKN 131 (137)
T ss_dssp C---
T ss_pred cccc
Confidence 7665
No 93
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.82 E-value=1.6e-20 Score=177.56 Aligned_cols=140 Identities=16% Similarity=0.177 Sum_probs=121.4
Q ss_pred cCCCCCcHHHHHHh-CCccCHHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccchh
Q 005862 43 TSPSENTLLHIAAA-GSIHDHENMATTLARKYPFLITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVK 121 (673)
Q Consensus 43 ~~~~g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~~~ll~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~ 121 (673)
.+..|+||||.|+. |+ .+++++|++ +.+ ++.+|..|.||||+|+..|+.++|++|+++|++
T Consensus 40 ~~~~g~t~L~~A~~~g~----~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------------ 101 (183)
T 3deo_A 40 VVSEYETPWWTAARKAD----EQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD------------ 101 (183)
T ss_dssp HHHHHHHHHHHHHHTTC----HHHHHHHTT-TSC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------------
T ss_pred CCCCCCCHHHHHHHcCC----HHHHHHHHh-cCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------
Confidence 35679999999999 99 999999999 665 889999999999999999999999999999887
Q ss_pred hhhhhcC-CccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHH
Q 005862 122 GLMEMKN-VRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKY 200 (673)
Q Consensus 122 ~~~~~~d-~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~ 200 (673)
++.+| ..|+||||+|+. .++. +++++|+++|++++ .+|..|.||||+|+..++.
T Consensus 102 --~~~~~~~~g~tpL~~A~~-------~~~~----------~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~----- 156 (183)
T 3deo_A 102 --LDHRDMRGGLTALHMAAG-------YVRP----------EVVEALVELGADIE-VEDERGLTALELAREILKT----- 156 (183)
T ss_dssp --TTCCCSSSSCCHHHHHHH-------TTCH----------HHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHHHT-----
T ss_pred --CCcCCCCCCCCHHHHHHh-------cCcH----------HHHHHHHHcCCCCc-CCCCCCCCHHHHHHHhccC-----
Confidence 55566 889999999999 9999 99999999999987 7889999999999874322
Q ss_pred HHHhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHc
Q 005862 201 ILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDK 239 (673)
Q Consensus 201 Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 239 (673)
..+.++|+.|+..|+.++++.|.++
T Consensus 157 --------------~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 157 --------------TPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp --------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred --------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence 3467888888888888888888764
No 94
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.82 E-value=3.8e-20 Score=162.64 Aligned_cols=113 Identities=23% Similarity=0.259 Sum_probs=88.3
Q ss_pred ccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHH
Q 005862 282 NEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPL 361 (673)
Q Consensus 282 d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~L 361 (673)
+..|.||||.|+..|+.++++.|++++ . .++.+|..|+||||+|+.+++.+++++|++.+ +++|.+|.+|+|||
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~--~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~d~~g~tpL 77 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKG--E-DVNRTLEGGRKPLHYAADCGQLEILEFLLLKG---ADINAPDKHHITPL 77 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTT--C-CTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTT---CCTTCCCTTSCCHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcC--C-CcCccCCCCCcHHHHHHHcCCHHHHHHHHHcC---CCCCcCCCCCCCHH
Confidence 456778888888888888888888854 2 34667778888888888888888888888887 77888888888888
Q ss_pred HHHHHhCCHHHHHHHHhcCCCCccccccCCCCHHHHHHhh
Q 005862 362 HLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIAKQK 401 (673)
Q Consensus 362 h~A~~~~~~~~v~~Ll~~~~~~~~~~n~~G~T~l~~a~~~ 401 (673)
|+|+..++.+++++|++++ ++++.+|.+|+||+|+|...
T Consensus 78 ~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~ 116 (123)
T 3aaa_C 78 LSAVYEGHVSCVKLLLSKG-ADKTVKGPDGLTAFEATDNQ 116 (123)
T ss_dssp HHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHCCCH
T ss_pred HHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHhCCH
Confidence 8888888888888888776 88888888888888888443
No 95
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.81 E-value=4.8e-20 Score=182.82 Aligned_cols=140 Identities=16% Similarity=0.174 Sum_probs=115.4
Q ss_pred CCCCCcHHHHHHh-CCccCHHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccchhh
Q 005862 44 SPSENTLLHIAAA-GSIHDHENMATTLARKYPFLITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKG 122 (673)
Q Consensus 44 ~~~g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~~~ll~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~ 122 (673)
+..|+||||.||. |+ .+++++|++ +.+ ++.+|..|.||||+|+..|+.++|++|+++|++
T Consensus 42 ~~~g~t~L~~A~~~g~----~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~------------- 102 (244)
T 3ui2_A 42 VSEYETPWWTAARKAD----EQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD------------- 102 (244)
T ss_dssp HHHHHHHHHHHHTTTC----HHHHHHTTT-TCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-------------
T ss_pred ccCCCCHHHHHHHcCC----HHHHHHHHc-CCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-------------
Confidence 3468899999999 99 999999998 665 788899999999999999999999999999887
Q ss_pred hhhhcC-CccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 005862 123 LMEMKN-VRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILKYI 201 (673)
Q Consensus 123 ~~~~~d-~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~L 201 (673)
++.++ ..|+||||+|+. .++. +++++|+++|++++ .+|..|.||||+|+..++
T Consensus 103 -~~~~~~~~g~t~L~~A~~-------~g~~----------~~v~~Ll~~ga~~~-~~d~~g~t~l~~A~~~~~------- 156 (244)
T 3ui2_A 103 -LDHRDMRGGLTALHMAAG-------YVRP----------EVVEALVELGADIE-VEDERGLTALELAREILK------- 156 (244)
T ss_dssp -TTCCCSSSCCCHHHHHHH-------TTCH----------HHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHHT-------
T ss_pred -CCcCCCCCCCCHHHHHHH-------cCCH----------HHHHHHHHCCCCCC-CCCCCCCcHHHHHHHHHh-------
Confidence 45566 779999999998 8888 99999999988887 678889999999985221
Q ss_pred HHhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcC
Q 005862 202 LEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQ 240 (673)
Q Consensus 202 l~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 240 (673)
...+.+|||+|+..|+.+++++|++..
T Consensus 157 ------------~~~~~~~l~~a~~~g~~~iv~~L~~~~ 183 (244)
T 3ui2_A 157 ------------TTPKGNPMQFGRRIGLEKVINVLEGQV 183 (244)
T ss_dssp ------------TCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------ccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence 144678888888888888888887753
No 96
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=183.86 Aligned_cols=141 Identities=16% Similarity=0.135 Sum_probs=120.7
Q ss_pred CCCcHHHHHHHCCCHHHHHHHHhhCCCcccc------cccCCChHHHHHHHc---CCHHHHHHHHhccCCCCCcccCCCC
Q 005862 250 QMNTPMHWAASVDHLEGVRFLYEINPDSVLQ------RNEEGFYPFHLASAN---GRVRVMGEFFEKENMPPPTELLNTK 320 (673)
Q Consensus 250 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~------~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~d~~ 320 (673)
.+.++|+.|+..|+.+.++.|++.+++ ++. .+..|.||||+|+.. |+.+++++|+++| ..++.+|.+
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d-~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g---advn~~d~~ 225 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFANGQD-FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG---GHLDAKAAD 225 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHS---SCTTCCCTT
T ss_pred chHHHHhhhhhccCHHHHHHHHhcCCc-ccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcC---CCCCCCCCC
Confidence 355789999999999999999999988 444 688999999999997 8999999999976 344778999
Q ss_pred CCcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCccccccCCCCHHHHHHh
Q 005862 321 GQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIAKQ 400 (673)
Q Consensus 321 g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~G~T~l~~a~~ 400 (673)
|+||||+|+..|+.+++++|++.| ++++.+|.+|+||||+|+..++.+++++|++.+ ++ .|.||||+|+.
T Consensus 226 G~TpLh~A~~~g~~~~v~~Ll~~g---ad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~g-a~------~g~tpLh~A~~ 295 (301)
T 2b0o_E 226 GNTALHYAALYNQPDCLKLLLKGR---ALVGTVNEAGETALDIARKKHHKECEELLEQAQ-AG------TFAFPLHVDYS 295 (301)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTT---CCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHH-HH------TTSSCCC----
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcC---CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhc-CC------CCCChhHHHHh
Confidence 999999999999999999999998 889999999999999999999999999999877 43 68999999998
Q ss_pred hccc
Q 005862 401 KSAE 404 (673)
Q Consensus 401 ~~~~ 404 (673)
.|+.
T Consensus 296 ~g~~ 299 (301)
T 2b0o_E 296 WVIS 299 (301)
T ss_dssp ----
T ss_pred cCCc
Confidence 8753
No 97
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.81 E-value=3.6e-20 Score=162.77 Aligned_cols=116 Identities=16% Similarity=0.133 Sum_probs=101.7
Q ss_pred CCCCCcHHHHHHh-CCccCHHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccchhh
Q 005862 44 SPSENTLLHIAAA-GSIHDHENMATTLARKYPFLITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKG 122 (673)
Q Consensus 44 ~~~g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~~~ll~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~ 122 (673)
+..|+|+||.|+. |+ .+++++|++++++ ++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 4 ~~~~~~~l~~A~~~~~----~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------- 65 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGD----LDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD------------- 65 (123)
T ss_dssp ---CHHHHHHHHHTTC----HHHHHHHHHTTCC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-------------
T ss_pred ccccchHHHHHHHcCC----HHHHHHHHHcCCC-cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-------------
Confidence 5578999999999 99 9999999999887 888999999999999999999999999999877
Q ss_pred hhhhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHH
Q 005862 123 LMEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNED 196 (673)
Q Consensus 123 ~~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~ 196 (673)
++.+|..|+||||+|+. .++. +++++|+++++++. .+|..|.|||++|...+..+
T Consensus 66 -~~~~d~~g~tpL~~A~~-------~~~~----------~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~~~ 120 (123)
T 3aaa_C 66 -INAPDKHHITPLLSAVY-------EGHV----------SCVKLLLSKGADKT-VKGPDGLTAFEATDNQAIKA 120 (123)
T ss_dssp -TTCCCTTSCCHHHHHHH-------HTCH----------HHHHHHHHTTCCTT-CCCTTSCCHHHHCCCHHHHH
T ss_pred -CCcCCCCCCCHHHHHHH-------cCCH----------HHHHHHHHcCCCCC-CcCCCCCCHHHHhCCHHHHH
Confidence 67789999999999999 9998 99999999999987 78899999999995444333
No 98
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.81 E-value=2e-20 Score=182.67 Aligned_cols=138 Identities=20% Similarity=0.165 Sum_probs=99.2
Q ss_pred CCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCCcHHH
Q 005862 247 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILH 326 (673)
Q Consensus 247 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh 326 (673)
.+..|.||||+|+..|+.++++.|++.+.+ ++.+|..|.||||+|+..|+.+++++|+++ ....++.+|..|+||||
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~g~~~~~~d~~g~tpL~ 145 (222)
T 3ehr_A 69 QAESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQ--PNIELNQQNKLGDTALH 145 (222)
T ss_dssp HEEEESCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHTTS--TTCCCCCCCTTSCCHHH
T ss_pred cccccccccccccccCcHHHHHHHHhCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHcC--CCCCccccCCCCCCHHH
Confidence 455678888888888888888888888877 677788888888888888888888888884 22445777888888888
Q ss_pred HHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCccccccCC
Q 005862 327 VAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHG 391 (673)
Q Consensus 327 ~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~G 391 (673)
+|+..|+.+++++|++.| ++++.+|.+|+||||+|+..++.++++.|+..+ ++.+..|.+|
T Consensus 146 ~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~-~~~~~~~~~~ 206 (222)
T 3ehr_A 146 AAAWKGYADIVQLLLAKG---ARTDLRNIEKKLAFDMATNAACASLLKKKQGTD-AVRTLSNAED 206 (222)
T ss_dssp HHHHHTCHHHHHHHHHHT---CCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred HHHHcCCHHHHHHHHHcC---CCCccccCCCCCHHHHhcchhHHHHHHHHhccc-hhhhccchhh
Confidence 888888888888888887 778888888888888888888888888888766 6666666554
No 99
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.81 E-value=2.2e-20 Score=176.56 Aligned_cols=109 Identities=23% Similarity=0.244 Sum_probs=59.3
Q ss_pred CCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCC-CCCCcHHHHH
Q 005862 250 QMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLN-TKGQNILHVA 328 (673)
Q Consensus 250 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d-~~g~t~Lh~A 328 (673)
+|.||||+|+..|+.++++.|++ +.+ ++..|..|.||||+|+..|+.+++++|+++|. .++..+ ..|+||||+|
T Consensus 43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga---~~~~~~~~~g~tpL~~A 117 (183)
T 3deo_A 43 EYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGA---DLDHRDMRGGLTALHMA 117 (183)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTT-TSC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC---CTTCCCSSSSCCHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHh-cCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC---CCCcCCCCCCCCHHHHH
Confidence 44555555555555555555555 443 45555555555555555555555555555331 123333 4555555555
Q ss_pred HhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHH
Q 005862 329 AKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAAL 366 (673)
Q Consensus 329 ~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~ 366 (673)
+..|+.+++++|++.| ++++.+|.+|+||||+|++
T Consensus 118 ~~~~~~~~v~~Ll~~g---a~~~~~d~~g~tpl~~A~~ 152 (183)
T 3deo_A 118 AGYVRPEVVEALVELG---ADIEVEDERGLTALELARE 152 (183)
T ss_dssp HHTTCHHHHHHHHHHT---CCTTCCCTTSCCHHHHHHH
T ss_pred HhcCcHHHHHHHHHcC---CCCcCCCCCCCCHHHHHHH
Confidence 5555555555555555 5555555555555555554
No 100
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.80 E-value=4e-19 Score=181.57 Aligned_cols=140 Identities=16% Similarity=0.117 Sum_probs=119.3
Q ss_pred CCcHHHHHHHhCcHHHHHHHHHcCCccccc------CCCCCCcHHHHHHHC---CCHHHHHHHHhhCCCcccccccCCCh
Q 005862 217 GKSPVKVAIELQKLGLLKMMHDKQPALLLI------QDEQMNTPMHWAASV---DHLEGVRFLYEINPDSVLQRNEEGFY 287 (673)
Q Consensus 217 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~------~d~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t 287 (673)
..++|+.|+..|+.+.++.|++.+ .+++. .|..|.||||+|+.. |+.+++++|++++++ ++.+|.+|+|
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g-~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-vn~~d~~G~T 228 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANG-QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNT 228 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTT-CCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-TTCCCTTCCC
T ss_pred hHHHHhhhhhccCHHHHHHHHhcC-CcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-CCCCCCCCCC
Confidence 456799999999999999999988 55655 688999999999997 899999999999998 7889999999
Q ss_pred HHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHh
Q 005862 288 PFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALY 367 (673)
Q Consensus 288 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~ 367 (673)
|||+|+..|+.+++++|+++| ..++.+|.+|+||||+|+..++.+++++|++.+ ++ .|+||||+|+..
T Consensus 229 pLh~A~~~g~~~~v~~Ll~~g---ad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~g---a~------~g~tpLh~A~~~ 296 (301)
T 2b0o_E 229 ALHYAALYNQPDCLKLLLKGR---ALVGTVNEAGETALDIARKKHHKECEELLEQAQ---AG------TFAFPLHVDYSW 296 (301)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT---CCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHH---HH------TTSSCCC-----
T ss_pred HHHHHHHcCCHHHHHHHHHcC---CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhc---CC------CCCChhHHHHhc
Confidence 999999999999999999966 334788999999999999999999999999988 32 689999999998
Q ss_pred CCH
Q 005862 368 GRH 370 (673)
Q Consensus 368 ~~~ 370 (673)
|+.
T Consensus 297 g~~ 299 (301)
T 2b0o_E 297 VIS 299 (301)
T ss_dssp ---
T ss_pred CCc
Confidence 864
No 101
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.79 E-value=2.5e-19 Score=177.58 Aligned_cols=140 Identities=19% Similarity=0.202 Sum_probs=107.4
Q ss_pred CCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccc-cCCChHHHHHH
Q 005862 215 LEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRN-EEGFYPFHLAS 293 (673)
Q Consensus 215 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A~ 293 (673)
..|.||||.|+..|+.++++.|++ + .+++.+|..|+||||+|+..|+.+++++|++++++ ++..+ ..|.||||+|+
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~-~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~t~L~~A~ 119 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-D-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMAA 119 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-T-CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-C-CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHHH
Confidence 356778888888888888887777 4 67777888888888888888888888888888887 55555 77888888888
Q ss_pred HcCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHH
Q 005862 294 ANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAA 373 (673)
Q Consensus 294 ~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v 373 (673)
..|+.+++++|+++| ..++.+|..|+||||+|+..+ .+..+.||||+|+..|+.+++
T Consensus 120 ~~g~~~~v~~Ll~~g---a~~~~~d~~g~t~l~~A~~~~--------------------~~~~~~~~l~~a~~~g~~~iv 176 (244)
T 3ui2_A 120 GYVRPEVVEALVELG---ADIEVEDERGLTALELAREIL--------------------KTTPKGNPMQFGRRIGLEKVI 176 (244)
T ss_dssp HTTCHHHHHHHHHTT---CCTTCCCTTCCCHHHHHHHHH--------------------TTCCCSSHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCC---CCCCCCCCCCCcHHHHHHHHH--------------------hccCCCCHHHHHHHcChHHHH
Confidence 888888888888865 333667888888888887521 124678888888888888888
Q ss_pred HHHHhcC
Q 005862 374 AILVWDG 380 (673)
Q Consensus 374 ~~Ll~~~ 380 (673)
++|++..
T Consensus 177 ~~L~~~~ 183 (244)
T 3ui2_A 177 NVLEGQV 183 (244)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 8888653
No 102
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.78 E-value=1.5e-18 Score=175.36 Aligned_cols=193 Identities=18% Similarity=0.173 Sum_probs=142.3
Q ss_pred ccCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCCcccccCCCCCCcHHH
Q 005862 177 LKNVDCKSPLYLAVESKNEDILKYILEALPVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMH 256 (673)
Q Consensus 177 ~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh 256 (673)
..|..+.++++.+...|+....+++-...+.... ..+...... ......-..+++.+.........+....++|+
T Consensus 61 ~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~--~kP~~~s~~---~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~ 135 (278)
T 1dcq_A 61 TLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDP--VKPNPGSDM---IARKDYITAKYMERRYARKKHADTAAKLHSLC 135 (278)
T ss_dssp TTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSC--CSCCTTCCH---HHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhc--CCCCCCCCH---HHHHHHHHHHHHHhhcccccccccchhhhhhh
Confidence 3677888999999999998877665444222111 011111111 11112222233333332222222223457899
Q ss_pred HHHHCCCHHHHHHHHhhCCCc-----ccccccCCChHHHHHHHc---CCHHHHHHHHhccCCCCCcccCCCCCCcHHHHH
Q 005862 257 WAASVDHLEGVRFLYEINPDS-----VLQRNEEGFYPFHLASAN---GRVRVMGEFFEKENMPPPTELLNTKGQNILHVA 328 (673)
Q Consensus 257 ~A~~~g~~~~v~~Ll~~~~~~-----~~~~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A 328 (673)
.|+..|+.+.++.+++.+.+. ++..|..|.||||+|+.. |+.+++++|+++| ..++.+|..|+||||+|
T Consensus 136 ~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~g---a~in~~d~~g~TpLh~A 212 (278)
T 1dcq_A 136 EAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS---GNLDKQTGKGSTALHYC 212 (278)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC---SCTTCCCTTCCCHHHHH
T ss_pred hHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCC---CCccccCCCCCCHHHHH
Confidence 999999999999999998874 334488899999999998 8999999999976 34477899999999999
Q ss_pred HhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhcC
Q 005862 329 AKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG 380 (673)
Q Consensus 329 ~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~ 380 (673)
+.+|+.+++++|++.| ++++.+|.+|+||||+|+..|+.+++++|++.+
T Consensus 213 ~~~g~~~~v~~Ll~~g---ad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g 261 (278)
T 1dcq_A 213 CLTDNAECLKLLLRGK---ASIEIANESGETPLDIAKRLKHEHCEELLTQAL 261 (278)
T ss_dssp HHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcC---CCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 9999999999999998 889999999999999999999999999999887
No 103
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.78 E-value=2.2e-19 Score=175.27 Aligned_cols=130 Identities=22% Similarity=0.283 Sum_probs=113.3
Q ss_pred ccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHh-CCCcccccccCCCCC
Q 005862 280 QRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKA-SNIDTLINEMDDDGN 358 (673)
Q Consensus 280 ~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~-~~~~~~in~~d~~G~ 358 (673)
..+.+|.||||.|+..|+.++++.|++.| ..++.+|..|+||||+|+.+|+.+++++|++. + +++|.+|.+|+
T Consensus 68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g---~~~~~~d~~g~ 141 (222)
T 3ehr_A 68 EQAESIDNPLHEAAKRGNLSWLRECLDNR---VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPN---IELNQQNKLGD 141 (222)
T ss_dssp HHEEEESCHHHHHHHHTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTT---CCCCCCCTTSC
T ss_pred ccccccccccccccccCcHHHHHHHHhCC---CCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCC---CCccccCCCCC
Confidence 45678899999999999999999999965 33477899999999999999999999999998 6 77999999999
Q ss_pred cHHHHHHHhCCHHHHHHHHhcCCCCccccccCCCCHHHHHHhhccccCccccCCcchh
Q 005862 359 TPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIAKQKSAEINPEFFGNDDDA 416 (673)
Q Consensus 359 T~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~G~T~l~~a~~~~~~~~~~~l~~~~~~ 416 (673)
||||+|+..|+.+++++|++.| ++++.+|.+|+||+|+|+..++.++++.+......
T Consensus 142 tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~ 198 (222)
T 3ehr_A 142 TALHAAAWKGYADIVQLLLAKG-ARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAV 198 (222)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHT-CCSCCCCTTSCCHHHHCCSHHHHHHHC--------
T ss_pred CHHHHHHHcCCHHHHHHHHHcC-CCCccccCCCCCHHHHhcchhHHHHHHHHhccchh
Confidence 9999999999999999999997 99999999999999999999988888777655433
No 104
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.76 E-value=9.9e-18 Score=169.26 Aligned_cols=124 Identities=15% Similarity=0.102 Sum_probs=83.8
Q ss_pred chHHHHHHHcCCHHHHHHHHHhCCCCC----cccccCCCCcHHHHHHHh---CcHHHHHHHHHcCCcccccCCCCCCcHH
Q 005862 183 KSPLYLAVESKNEDILKYILEALPVND----DCATKLEGKSPVKVAIEL---QKLGLLKMMHDKQPALLLIQDEQMNTPM 255 (673)
Q Consensus 183 ~tpL~~A~~~g~~~iv~~Ll~~~~~~~----~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~d~~g~t~L 255 (673)
.++|+.|+..|+.+.++.+++.+.+.. ....+..|.||||.|+.. ++.+++++|++++ .+++.+|..|+|||
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~g-a~in~~d~~g~TpL 209 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS-GNLDKQTGKGSTAL 209 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC-SCTTCCCTTCCCHH
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCC-CCccccCCCCCCHH
Confidence 467888888888888888887754432 122345566777777766 6666777777666 56666666677777
Q ss_pred HHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHHcCCHHHHHHHHhcc
Q 005862 256 HWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKE 308 (673)
Q Consensus 256 h~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~ 308 (673)
|+|+..|+.+++++|++++++ ++.+|.+|.||||+|+..|+.+++++|+++|
T Consensus 210 h~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g 261 (278)
T 1dcq_A 210 HYCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQAL 261 (278)
T ss_dssp HHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 777777777777777766666 5666666677777777666667766666655
No 105
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.75 E-value=4.4e-18 Score=177.94 Aligned_cols=149 Identities=17% Similarity=0.130 Sum_probs=115.1
Q ss_pred CCCCCCcHHHHHHHC-CCHHHHHHHHhhCCCcccccc--cCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCCc
Q 005862 247 QDEQMNTPMHWAASV-DHLEGVRFLYEINPDSVLQRN--EEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQN 323 (673)
Q Consensus 247 ~d~~g~t~Lh~A~~~-g~~~~v~~Ll~~~~~~~~~~d--~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t 323 (673)
.+..+.|+||.|+.. |+.++++.|++++++ ++..+ ..|.||||+|+..|+.+++++|+++| ..++..|..|+|
T Consensus 195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gad-vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~G---advn~~d~~G~T 270 (368)
T 3jue_A 195 GSLHPGALLFRASGHPPSLPTMADALAHGAD-VNWVNGGQDNATPLIQATAANSLLACEFLLQNG---ANVNQADSAGRG 270 (368)
T ss_dssp --CCHHHHHHHHTSSSCCHHHHHHHHHTTCC-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCC
T ss_pred ccCCCCcHHHHHHHccCCHHHHHHHHHcCCC-CCccccccCCCCHHHHHHHCCCHHHHHHHHHcC---CCCCCCCCCCCC
Confidence 344567899999999 999999999999998 67777 88999999999999999999999966 344788999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhcC--CCCccccccCCCCHHHHHHhh
Q 005862 324 ILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDG--RANQDIINFHGQTAYSIAKQK 401 (673)
Q Consensus 324 ~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~--~~~~~~~n~~G~T~l~~a~~~ 401 (673)
|||+|+..|+.+++++|++.| ++++.+|.+|+||||+|+..++.+++++|+..+ ..+....+..+.|+++++...
T Consensus 271 pLh~A~~~g~~~~v~~LL~~G---ad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~ 347 (368)
T 3jue_A 271 PLHHATILGHTGLACLFLKRG---ADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF 347 (368)
T ss_dssp HHHHHHHHTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred HHHHHHHcCcHHHHHHHHHCc---CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence 999999999999999999998 889999999999999999999999999999765 234456677889999988765
Q ss_pred c
Q 005862 402 S 402 (673)
Q Consensus 402 ~ 402 (673)
.
T Consensus 348 ~ 348 (368)
T 3jue_A 348 S 348 (368)
T ss_dssp -
T ss_pred H
Confidence 3
No 106
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.75 E-value=5.3e-18 Score=140.76 Aligned_cols=92 Identities=27% Similarity=0.409 Sum_probs=85.5
Q ss_pred CCCcHHHHHHh-CCccCHHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccchhhhh
Q 005862 46 SENTLLHIAAA-GSIHDHENMATTLARKYPFLITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQIDVKGLM 124 (673)
Q Consensus 46 ~g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~~~ll~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~ 124 (673)
+|+||||+|+. |+ .+++++|++++++ ++.+|..|.||||+|+..|+.+++++|+++|++ +
T Consensus 1 ~g~t~L~~A~~~~~----~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~--------------~ 61 (93)
T 1n0q_A 1 NGRTPLHLAARNGH----LEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD--------------V 61 (93)
T ss_dssp --CCHHHHHHHHTC----HHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC--------------T
T ss_pred CCCcHHHHHHHcCC----HHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--------------C
Confidence 48999999999 99 9999999999988 899999999999999999999999999999887 6
Q ss_pred hhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCC
Q 005862 125 EMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPN 173 (673)
Q Consensus 125 ~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~ 173 (673)
+.+|..|+||||+|+. .++. +++++|+++|++
T Consensus 62 ~~~d~~g~t~l~~A~~-------~~~~----------~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 62 NAKDKNGRTPLHLAAR-------NGHL----------EVVKLLLEAGAY 93 (93)
T ss_dssp TCCCTTSCCHHHHHHH-------TTCH----------HHHHHHHHTTCC
T ss_pred CccCCCCCCHHHHHHH-------cCCH----------HHHHHHHHcCCC
Confidence 7789999999999999 9999 999999998864
No 107
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.73 E-value=1.9e-17 Score=137.41 Aligned_cols=91 Identities=34% Similarity=0.547 Sum_probs=73.5
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHH
Q 005862 284 EGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHL 363 (673)
Q Consensus 284 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~ 363 (673)
+|+||||+|+..|+.+++++|+++| ..++.+|..|+||||+|+.+++.+++++|++.| ++++.+|.+|+||||+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~d~~g~t~l~~ 74 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAG---ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG---ADVNAKDKNGRTPLHL 74 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcC---CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCCccCCCCCCHHHH
Confidence 4778888888888888888888855 334667788888888888888888888888887 7788888888888888
Q ss_pred HHHhCCHHHHHHHHhcC
Q 005862 364 AALYGRHLAAAILVWDG 380 (673)
Q Consensus 364 A~~~~~~~~v~~Ll~~~ 380 (673)
|+..|+.+++++|++.|
T Consensus 75 A~~~~~~~~~~~Ll~~g 91 (93)
T 1n0q_A 75 AARNGHLEVVKLLLEAG 91 (93)
T ss_dssp HHHTTCHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHcC
Confidence 88888888888888776
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.73 E-value=1.7e-17 Score=182.13 Aligned_cols=136 Identities=17% Similarity=0.160 Sum_probs=110.5
Q ss_pred CCcHHHHHHHCCCHHHHHHHHhhCCCccccc------ccCCChHHHHHHH---cCCHHHHHHHHhccCCCCCcccCCCCC
Q 005862 251 MNTPMHWAASVDHLEGVRFLYEINPDSVLQR------NEEGFYPFHLASA---NGRVRVMGEFFEKENMPPPTELLNTKG 321 (673)
Q Consensus 251 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~------d~~g~tpLh~A~~---~g~~~iv~~Ll~~~~~~~~~~~~d~~g 321 (673)
..+.||.|+..|+.+.++.|++.+++ ++.. |..|.||||+|+. .|+.+++++|+++| ..++.+|.+|
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~-~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~g---a~vn~~d~~g 207 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQD-FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG---GHLDAKAADG 207 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCC-SSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHS---CCTTCCCSSS
T ss_pred cHHHHHHHHhccCHHHHHHHHhhccc-ccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcC---CCCCccCCCC
Confidence 34779999999999999999999988 5544 7889999999966 89999999999977 3447788999
Q ss_pred CcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCccccccCCCCHHHHHHh
Q 005862 322 QNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAYSIAKQ 400 (673)
Q Consensus 322 ~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~G~T~l~~a~~ 400 (673)
+||||+|+.+|+.+++++|++.| +++|.+|.+|+||||+|+..|+.+++++|++.| ++++. ||+|.+..
T Consensus 208 ~TpLh~A~~~g~~~~v~~Ll~~g---a~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~g-a~~~~------~~~h~~~~ 276 (497)
T 3lvq_E 208 NTALHYAALYNQPDCLKLLLKGR---ALVGTVNEAGETALDIARKKHHKECEELLEQAQ-AGTFA------FPLHVDYS 276 (497)
T ss_dssp CCHHHHHTTTTCHHHHHHHHHTC---CCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTC-C------------------
T ss_pred CcHHHHHHHcCCHHHHHHHHHcC---CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhC-CCCCC------Ccceeecc
Confidence 99999999999999999999998 889999999999999999999999999999887 88776 45655543
No 109
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.73 E-value=6.6e-18 Score=146.25 Aligned_cols=109 Identities=28% Similarity=0.412 Sum_probs=92.2
Q ss_pred ccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCc
Q 005862 280 QRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNT 359 (673)
Q Consensus 280 ~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T 359 (673)
.+|.+|.||||.|+..|+.++++.|++++ ..++..|..|+||||+|+..++.+++++|++.+ ++++.+|.+|+|
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g---~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g---~~~~~~d~~g~t 77 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKG---ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG---ADVNARSKDGNT 77 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTT---CCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTT---CCTTCCCTTCCC
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC---CCCcccCCCCCC
Confidence 46788899999999999999999999855 234677888999999999999999999999888 778889999999
Q ss_pred HHHHHHHhCCHHHHHHHHhcCCCCccccccCCCCHH
Q 005862 360 PLHLAALYGRHLAAAILVWDGRANQDIINFHGQTAY 395 (673)
Q Consensus 360 ~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~G~T~l 395 (673)
|||+|+..++.+++++|+++| ++++.++..|.||-
T Consensus 78 pl~~A~~~~~~~~~~~Ll~~g-a~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 78 PEHLAKKNGHHEIVKLLDAKG-ADVNARSWGSSHHH 112 (115)
T ss_dssp TTHHHHTTTCHHHHHHHHTTS-SSHHHHSCCCC---
T ss_pred HHHHHHHCCCHHHHHHHHHcC-CCCCcCCccccccc
Confidence 999999999999999999876 99999999998874
No 110
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.72 E-value=2.9e-17 Score=171.76 Aligned_cols=149 Identities=17% Similarity=0.170 Sum_probs=113.8
Q ss_pred CCCCcHHHHHHHh-CcHHHHHHHHHcCCcccccCC--CCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHH
Q 005862 215 LEGKSPVKVAIEL-QKLGLLKMMHDKQPALLLIQD--EQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHL 291 (673)
Q Consensus 215 ~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~d--~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~ 291 (673)
..+.++||.|+.. ++.++++.|++.+ .+++..+ ..|.||||+|+..|+.+++++|++++++ ++..|..|.||||+
T Consensus 197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~G-advn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~~G~TpLh~ 274 (368)
T 3jue_A 197 LHPGALLFRASGHPPSLPTMADALAHG-ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPLHH 274 (368)
T ss_dssp CCHHHHHHHHTSSSCCHHHHHHHHHTT-CCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred CCCCcHHHHHHHccCCHHHHHHHHHcC-CCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHH
Confidence 3456799999999 9999999999998 7778777 8899999999999999999999999988 78899999999999
Q ss_pred HHHcCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHhC
Q 005862 292 ASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALYG 368 (673)
Q Consensus 292 A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~~ 368 (673)
|+..|+.+++++|+++| ..++..|.+|+||||+|+..++.+++++|++.+.........+..+.|+++++....
T Consensus 275 A~~~g~~~~v~~LL~~G---ad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 275 ATILGHTGLACLFLKRG---ADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp HHHHTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred HHHcCcHHHHHHHHHCc---CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence 99999999999999966 334778999999999999999999999999887554555566778889888876543
No 111
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.70 E-value=1.2e-16 Score=175.40 Aligned_cols=137 Identities=15% Similarity=0.126 Sum_probs=111.2
Q ss_pred CCcHHHHHHHhCcHHHHHHHHHcCCcccccC------CCCCCcHHHHHHH---CCCHHHHHHHHhhCCCcccccccCCCh
Q 005862 217 GKSPVKVAIELQKLGLLKMMHDKQPALLLIQ------DEQMNTPMHWAAS---VDHLEGVRFLYEINPDSVLQRNEEGFY 287 (673)
Q Consensus 217 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~------d~~g~t~Lh~A~~---~g~~~~v~~Ll~~~~~~~~~~d~~g~t 287 (673)
..+.||.|+..|+.+.++.|++.+ .+++.. |..|.||||+|+. .|+.+++++|+++|++ ++.+|.+|+|
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g-~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~-vn~~d~~g~T 209 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANG-QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNT 209 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTT-CCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCC-TTCCCSSSCC
T ss_pred cHHHHHHHHhccCHHHHHHHHhhc-ccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCC-CCccCCCCCc
Confidence 346799999999999999999998 666655 8899999999966 8999999999999998 8899999999
Q ss_pred HHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHHHHHHHh
Q 005862 288 PFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPLHLAALY 367 (673)
Q Consensus 288 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~Lh~A~~~ 367 (673)
|||+|+..|+.+++++|+++| ..++.+|.+|+||||+|+..|+.+++++|++.| ++++. +|+|.+...
T Consensus 210 pLh~A~~~g~~~~v~~Ll~~g---a~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~g---a~~~~------~~~h~~~~~ 277 (497)
T 3lvq_E 210 ALHYAALYNQPDCLKLLLKGR---ALVGTVNEAGETALDIARKKHHKECEELLEQAQ---AGTFA------FPLHVDYSW 277 (497)
T ss_dssp HHHHHTTTTCHHHHHHHHHTC---CCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTC---C-------------------
T ss_pred HHHHHHHcCCHHHHHHHHHcC---CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhC---CCCCC------Ccceeeccc
Confidence 999999999999999999976 334778999999999999999999999999998 66654 677776543
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.68 E-value=5.9e-17 Score=140.21 Aligned_cols=109 Identities=26% Similarity=0.338 Sum_probs=96.0
Q ss_pred cCCCCCCcHHHHHHHCCCHHHHHHHHhhCCCcccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCCcHH
Q 005862 246 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNIL 325 (673)
Q Consensus 246 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~L 325 (673)
.+|.+|+||||+|+..|+.+++++|++++++ ++..|..|.||||.|+..|+.+++++|+++| ..++.+|..|+|||
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g---~~~~~~d~~g~tpl 79 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKG---ADVNARSKDGNTPE 79 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTT---CCTTCCCTTCCCTT
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC---CCCcccCCCCCCHH
Confidence 4688899999999999999999999999888 7888999999999999999999999999965 33477888999999
Q ss_pred HHHHhcCCHHHHHHHHHhCCCcccccccCCCCCcHH
Q 005862 326 HVAAKKGKSDTVRRILKASNIDTLINEMDDDGNTPL 361 (673)
Q Consensus 326 h~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~T~L 361 (673)
|+|+..++.+++++|++.| +++|.++..|.||-
T Consensus 80 ~~A~~~~~~~~~~~Ll~~g---a~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 80 HLAKKNGHHEIVKLLDAKG---ADVNARSWGSSHHH 112 (115)
T ss_dssp HHHHTTTCHHHHHHHHTTS---SSHHHHSCCCC---
T ss_pred HHHHHCCCHHHHHHHHHcC---CCCCcCCccccccc
Confidence 9999999999999999998 88999999998873
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.60 E-value=2.2e-15 Score=129.19 Aligned_cols=91 Identities=25% Similarity=0.373 Sum_probs=82.0
Q ss_pred cccCCCCCcHHHHHHh-CCccCHHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccc
Q 005862 41 TITSPSENTLLHIAAA-GSIHDHENMATTLARKYPFLITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQID 119 (673)
Q Consensus 41 ~~~~~~g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~~~ll~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~ 119 (673)
.-.+.+|+|+||+|+. |+ .+++++|++++++ ++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 18 ~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~-i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~---------- 82 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQ----DDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD---------- 82 (110)
T ss_dssp ----CCHHHHHHHHHHHTC----HHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----------
T ss_pred cccCCccchHHHHHHHcCC----HHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----------
Confidence 3478889999999999 99 9999999999887 889999999999999999999999999999887
Q ss_pred hhhhhhhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHH
Q 005862 120 VKGLMEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSL 167 (673)
Q Consensus 120 ~~~~~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~L 167 (673)
++.+|..|+||||+|+. .++. +++++|
T Consensus 83 ----~~~~d~~g~tpl~~A~~-------~~~~----------~~~~~L 109 (110)
T 2zgd_A 83 ----VXAQDKFGKTAFDISID-------NGNE----------DLAEIL 109 (110)
T ss_dssp ----TTCCCTTSCCHHHHHHH-------HTCH----------HHHHHH
T ss_pred ----ccccccCCCcHHHHHHH-------cCCH----------HHHHHh
Confidence 67789999999999999 9998 888876
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.59 E-value=1.4e-15 Score=130.42 Aligned_cols=92 Identities=20% Similarity=0.224 Sum_probs=48.2
Q ss_pred cccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCcccCCCCCCcHHHHHHhcCCHHHHHHHHHhCCCcccccccCCCCC
Q 005862 279 LQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPTELLNTKGQNILHVAAKKGKSDTVRRILKASNIDTLINEMDDDGN 358 (673)
Q Consensus 279 ~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~in~~d~~G~ 358 (673)
...|.+|.||||.|+..|+.+++++|+++| ..++.+|..|+||||+|+.+++.+++++|++.| ++++.+|.+|+
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g---a~~~~~d~~g~ 91 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMANG---ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG---ADVXAQDKFGK 91 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHTT---CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSC
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHcC---CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCccccccCCC
Confidence 344555555555555555555555555533 222444555555555555555555555555555 44555555555
Q ss_pred cHHHHHHHhCCHHHHHHH
Q 005862 359 TPLHLAALYGRHLAAAIL 376 (673)
Q Consensus 359 T~Lh~A~~~~~~~~v~~L 376 (673)
||||+|+..|+.+++++|
T Consensus 92 tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 92 TAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp CHHHHHHHHTCHHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHh
Confidence 555555555555555543
No 115
>1y29_A Huwentoxin-X; A double-stranded beta-sheet, ICK, knottin; NMR {Synthetic} SCOP: g.3.6.2
Probab=81.38 E-value=0.66 Score=26.51 Aligned_cols=16 Identities=38% Similarity=1.109 Sum_probs=13.5
Q ss_pred cCCCCCccccccccCC
Q 005862 654 SSPKRTPCCARCLHGK 669 (673)
Q Consensus 654 ~~~~~~~~~~~~~~~~ 669 (673)
..+-+.|||+-|.|++
T Consensus 11 ~~~~riPCCG~Cs~nk 26 (28)
T 1y29_A 11 GATQKIPCCGVCSHNK 26 (28)
T ss_dssp TTCCSCCBSSCBSSSC
T ss_pred CCccccccccccccCc
Confidence 4567899999999986
No 116
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=74.84 E-value=8.1 Score=39.09 Aligned_cols=160 Identities=13% Similarity=0.079 Sum_probs=78.8
Q ss_pred ccCCCCchHHHHHHHcCCHHHHHHHHHhC-CCCCcccccCCCCcHHHHHHHhCcHHHHHHHHHcCC--cccccCCCCCCc
Q 005862 177 LKNVDCKSPLYLAVESKNEDILKYILEAL-PVNDDCATKLEGKSPVKVAIELQKLGLLKMMHDKQP--ALLLIQDEQMNT 253 (673)
Q Consensus 177 ~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~--~~~~~~d~~g~t 253 (673)
..+..|.-.+..+......+-...+++.. +.......|..|...+..+...+..+..+.+++.-. ...-..+..|..
T Consensus 104 ~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~ 183 (351)
T 3gvo_A 104 ALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCR 183 (351)
T ss_dssp HTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHH
T ss_pred hhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHH
Confidence 45566666666666666665555555541 111112344555555555555444443333333221 011122334444
Q ss_pred HHHHHHHCCCHH----HHHHHHhhCCCcccccccCCChHHHHHHHcCCHHHHHHHHhccCCCCCc--ccCCCCCCcHHHH
Q 005862 254 PMHWAASVDHLE----GVRFLYEINPDSVLQRNEEGFYPFHLASANGRVRVMGEFFEKENMPPPT--ELLNTKGQNILHV 327 (673)
Q Consensus 254 ~Lh~A~~~g~~~----~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~--~~~d~~g~t~Lh~ 327 (673)
.+..+......+ +++.|..+- ..-..|.+|...+......+..+..+.+++. -...+ -..++.|...+.-
T Consensus 184 Vvq~~le~~~~~~~~~ii~~l~~~~--~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~--l~~~~~~Ls~~k~gs~Vvek 259 (351)
T 3gvo_A 184 VIQRILEHCTAEQTLPILEELHQHT--EQLVQDQYGNYVIQHVLEHGRPEDKSKIVSE--IRGKVLALSQHKFASNVVEK 259 (351)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHTTH--HHHHTSTTHHHHHHHHHHHSCHHHHHHHHHT--TTTCHHHHHTSTTHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHhhhH--HhcCCCchHHHHHHHHHHhCchhhHHHHHHH--HHHHHHHHhcCcHHHHHHHH
Confidence 444444433332 223332211 1235677888888888888887777777662 11111 1235566666666
Q ss_pred HHhcCCHHHHHHH
Q 005862 328 AAKKGKSDTVRRI 340 (673)
Q Consensus 328 A~~~~~~~iv~~L 340 (673)
+...+..+.-+.+
T Consensus 260 ~l~~~~~~~r~~i 272 (351)
T 3gvo_A 260 CVTHASRAERALL 272 (351)
T ss_dssp HHHHSCHHHHHHH
T ss_pred HHHhCCHHHHHHH
Confidence 6666655433333
No 117
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=67.92 E-value=9.5 Score=38.56 Aligned_cols=225 Identities=11% Similarity=0.072 Sum_probs=124.2
Q ss_pred cCCCCCcHHHHHHh-CCccCHHHHHHHHHHhC-Ccc-ccccCCCCCcHHHHHHHcCCHHHHHHHHhchhccCCCCCcccc
Q 005862 43 TSPSENTLLHIAAA-GSIHDHENMATTLARKY-PFL-ITMQNSKRDTPLHVAARAGMLQTAKILVDCAKRSGMTSSSQID 119 (673)
Q Consensus 43 ~~~~g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~~-~~l-l~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~~ 119 (673)
.|.+|.-.|..... ++ .+..+.+.+.- +.. --..|..|+..+.-....+..+....+++.-..
T Consensus 33 ~dq~gsR~lQ~~l~~~~----~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g---------- 98 (351)
T 3gvo_A 33 QDQHGSRFIQQKLERAT----PAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRG---------- 98 (351)
T ss_dssp TSHHHHHHHHHHHHHCC----HHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTT----------
T ss_pred cCCcchHHHHHHHhhCC----HHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHh----------
Confidence 66778888888888 87 55555554421 111 134688888888888888888877777764211
Q ss_pred hhhhhhhcCCccCcHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhcCCCcccccCCCCchHHHHHHHcCCHHHHH
Q 005862 120 VKGLMEMKNVRGNTALHEALNALLDAKKDKNKQKEERVTLLVSLARSLVSEDPNASYLKNVDCKSPLYLAVESKNEDILK 199 (673)
Q Consensus 120 ~~~~~~~~d~~g~T~Lh~A~~~l~~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~ 199 (673)
.-.--..+.+|.-.+..+.. ...... ...+++.+. +.......|..|...+......+..+..+
T Consensus 99 -~~~~l~~~~~G~rvvQk~le-------~~~~~~------~~~i~~el~--~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~ 162 (351)
T 3gvo_A 99 -HVLPLALQMYGCRVIQKALE-------SISSDQ------QSEMVKELD--GHVLKCVKDQNGNHVVQKCIECVQPQSLQ 162 (351)
T ss_dssp -CHHHHHTSTTHHHHHHHHHH-------HSCHHH------HHHHHGGGT--TCHHHHHHSTTHHHHHHHHHHHSCGGGTH
T ss_pred -hHHHHhhCHHhHHHHHHHHH-------hCCHHH------HHHHHHHhh--hhHHHHHHhhhhhHHHHHHHHhCCHHHHH
Confidence 00112356677766666665 332200 002222221 11122245666766666666666655555
Q ss_pred HHHHhCCCC-CcccccCCCCcHHHHHHHhCcHH----HHHHHHHcCCcccccCCCCCCcHHHHHHHCCCHHHHHHHHhhC
Q 005862 200 YILEALPVN-DDCATKLEGKSPVKVAIELQKLG----LLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEIN 274 (673)
Q Consensus 200 ~Ll~~~~~~-~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 274 (673)
.+++..... ..-..+..|...+..+......+ +++.|... ...-..|..|+-.+......+..+..+.+++.-
T Consensus 163 ~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~--~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l 240 (351)
T 3gvo_A 163 FIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQH--TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEI 240 (351)
T ss_dssp HHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTT--HHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhh--HHhcCCCchHHHHHHHHHHhCchhhHHHHHHHH
Confidence 555552211 11133445555565555554433 33333322 334456888998998888888877777776653
Q ss_pred CCc--ccccccCCChHHHHHHHcCCHH
Q 005862 275 PDS--VLQRNEEGFYPFHLASANGRVR 299 (673)
Q Consensus 275 ~~~--~~~~d~~g~tpLh~A~~~g~~~ 299 (673)
... ....++.|...+..+...+..+
T Consensus 241 ~~~~~~Ls~~k~gs~Vvek~l~~~~~~ 267 (351)
T 3gvo_A 241 RGKVLALSQHKFASNVVEKCVTHASRA 267 (351)
T ss_dssp TTCHHHHHTSTTHHHHHHHHHHHSCHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhCCHH
Confidence 221 1234555656666666555543
No 118
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=59.82 E-value=36 Score=34.43 Aligned_cols=60 Identities=8% Similarity=-0.025 Sum_probs=39.5
Q ss_pred cCCCCCcHHHHHHh-CCccCHHHHHHHHHHh-CCcc-ccccCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 005862 43 TSPSENTLLHIAAA-GSIHDHENMATTLARK-YPFL-ITMQNSKRDTPLHVAARAGMLQTAKILVDC 106 (673)
Q Consensus 43 ~~~~g~t~Lh~Aa~-g~~~~~~e~v~~Ll~~-~~~l-l~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ 106 (673)
.|.+|.-.+.-+.. ++ .+..+.+.+. .+.. --..|..|+..+......+..+..+.+++.
T Consensus 38 ~d~~gsR~lQ~~l~~~~----~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~ 100 (369)
T 3k49_A 38 KDQHGSRFIQRELATSP----ASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQ 100 (369)
T ss_dssp TSHHHHHHHHHHHTTCC----HHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cCCcchHHHHHHhccCC----HHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHH
Confidence 66677778888888 77 5555555442 1111 124578888888888888887766666654
No 119
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=44.79 E-value=42 Score=33.93 Aligned_cols=91 Identities=10% Similarity=0.070 Sum_probs=40.3
Q ss_pred CCCCCcHHHHHHHCCCHHHHHHHHhhCCCc--ccccccCCChHHHHHHHcCCH----------HHHHHHHhccCCCCCcc
Q 005862 248 DEQMNTPMHWAASVDHLEGVRFLYEINPDS--VLQRNEEGFYPFHLASANGRV----------RVMGEFFEKENMPPPTE 315 (673)
Q Consensus 248 d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--~~~~d~~g~tpLh~A~~~g~~----------~iv~~Ll~~~~~~~~~~ 315 (673)
+..|...+..+...+..+--+.+++.-.+. .-..|.+|...+..+...+.. .+++.+.. ... .-
T Consensus 183 ~~~Gs~Vvq~~l~~~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~~~~~~~~~~~~i~~~l~~--~~~--~L 258 (369)
T 3k49_A 183 HSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVAN--NVV--EY 258 (369)
T ss_dssp STTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTTSCHHHHHHHHHHHHHHHT--THH--HH
T ss_pred CCccCcHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcCCchhhhhHhHHHHHHHHHHH--HHH--HH
Confidence 444555555555555444444444321111 123455666666555554432 22333322 000 01
Q ss_pred cCCCCCCcHHHHHHhcCCHHHHHHHHH
Q 005862 316 LLNTKGQNILHVAAKKGKSDTVRRILK 342 (673)
Q Consensus 316 ~~d~~g~t~Lh~A~~~~~~~iv~~Ll~ 342 (673)
..++.|...+.-+...+..+.-+.+++
T Consensus 259 s~~k~gS~Vvek~l~~~~~~~r~~ii~ 285 (369)
T 3k49_A 259 SKHKFASNVVEKSILYGSKNQKDLIIS 285 (369)
T ss_dssp HTSTTHHHHHHHHHHHSCHHHHHHHHT
T ss_pred HhhhHhhHHHHHHHHhCCHHHHHHHHH
Confidence 234555555655555555555555544
No 120
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=23.80 E-value=20 Score=20.62 Aligned_cols=10 Identities=40% Similarity=1.281 Sum_probs=6.5
Q ss_pred CccccccccC
Q 005862 659 TPCCARCLHG 668 (673)
Q Consensus 659 ~~~~~~~~~~ 668 (673)
+-||+||..+
T Consensus 18 dwccgrcirn 27 (32)
T 4b2v_A 18 DWCCGRCIRN 27 (32)
T ss_dssp CCCSSEEETT
T ss_pred chhhhHHHHh
Confidence 4578888653
Done!