Query 005863
Match_columns 673
No_of_seqs 310 out of 986
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 09:29:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005863.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005863hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lk2_A Homeobox protein TGIF1; 99.7 9E-18 3.1E-22 147.0 5.9 61 413-473 10-70 (89)
2 2dmn_A Homeobox protein TGIF2L 99.7 2.4E-17 8.2E-22 141.3 7.4 64 408-471 7-70 (83)
3 3k2a_A Homeobox protein MEIS2; 99.7 3.3E-17 1.1E-21 135.4 6.3 63 412-474 2-64 (67)
4 1x2n_A Homeobox protein pknox1 99.7 1.2E-16 4E-21 133.1 7.3 64 408-471 7-70 (73)
5 1du6_A PBX1, homeobox protein 99.6 5.7E-16 2E-20 125.7 7.2 61 409-469 4-64 (64)
6 1b72_B Protein (PBX1); homeodo 99.6 1.1E-15 3.6E-20 131.1 7.7 63 409-471 2-64 (87)
7 1puf_B PRE-B-cell leukemia tra 99.6 1.3E-15 4.4E-20 126.8 7.4 61 409-469 2-62 (73)
8 1k61_A Mating-type protein alp 99.6 1.5E-15 5E-20 121.9 7.2 59 411-469 1-59 (60)
9 1le8_B Mating-type protein alp 99.6 3.4E-15 1.2E-19 127.7 7.3 60 412-471 6-65 (83)
10 1mnm_C Protein (MAT alpha-2 tr 99.5 6.6E-15 2.3E-19 126.6 7.9 60 408-467 27-86 (87)
11 2ecc_A Homeobox and leucine zi 99.4 9E-14 3.1E-18 118.5 6.6 59 410-471 5-63 (76)
12 1akh_A Protein (mating-type pr 99.4 2.2E-13 7.4E-18 109.4 6.6 57 408-467 5-61 (61)
13 1bw5_A ISL-1HD, insulin gene e 99.4 4.8E-13 1.6E-17 109.2 7.3 60 408-470 3-62 (66)
14 2cra_A Homeobox protein HOX-B1 99.4 1.2E-12 4.2E-17 108.1 8.1 60 407-469 6-65 (70)
15 2dmu_A Homeobox protein goosec 99.4 1.2E-12 4E-17 108.1 7.7 59 408-469 7-65 (70)
16 1ig7_A Homeotic protein MSX-1; 99.4 1.2E-12 4E-17 104.1 7.1 56 410-468 2-57 (58)
17 2da2_A Alpha-fetoprotein enhan 99.4 1.5E-12 5.2E-17 107.3 8.0 59 408-469 7-65 (70)
18 2da4_A Hypothetical protein DK 99.3 4.3E-13 1.5E-17 113.5 4.7 61 408-468 8-69 (80)
19 2dmq_A LIM/homeobox protein LH 99.3 2.3E-12 7.7E-17 108.8 8.7 59 408-469 7-65 (80)
20 2da1_A Alpha-fetoprotein enhan 99.3 1.2E-12 4E-17 107.9 6.7 60 407-469 6-65 (70)
21 1jgg_A Segmentation protein EV 99.3 1.4E-12 4.7E-17 104.6 6.9 58 409-469 2-59 (60)
22 2hdd_A Protein (engrailed home 99.3 1.4E-12 4.7E-17 105.0 6.8 57 409-468 4-60 (61)
23 2da3_A Alpha-fetoprotein enhan 99.3 1.3E-12 4.5E-17 109.9 7.0 60 407-469 16-75 (80)
24 2e1o_A Homeobox protein PRH; D 99.3 1.6E-12 5.5E-17 107.4 7.2 59 408-469 7-65 (70)
25 2dmt_A Homeobox protein BARH-l 99.3 2.2E-12 7.4E-17 109.3 8.1 60 407-469 16-75 (80)
26 2djn_A Homeobox protein DLX-5; 99.3 1.6E-12 5.4E-17 107.4 7.1 59 408-469 7-65 (70)
27 2l7z_A Homeobox protein HOX-A1 99.3 2.3E-12 8E-17 107.5 7.9 61 406-469 5-65 (73)
28 1fjl_A Paired protein; DNA-bin 99.3 2E-12 6.7E-17 109.7 7.3 60 407-469 17-76 (81)
29 2h1k_A IPF-1, pancreatic and d 99.3 2.1E-12 7.1E-17 104.7 7.0 58 409-469 4-61 (63)
30 1nk2_P Homeobox protein VND; h 99.3 3.1E-12 1.1E-16 107.6 8.2 61 406-469 7-67 (77)
31 2k40_A Homeobox expressed in E 99.3 1.8E-12 6.2E-17 106.1 6.5 58 409-469 2-59 (67)
32 2dms_A Homeobox protein OTX2; 99.3 3E-12 1E-16 108.3 7.5 60 407-469 6-65 (80)
33 2vi6_A Homeobox protein nanog; 99.3 3.3E-12 1.1E-16 103.1 7.2 57 409-468 4-60 (62)
34 3a02_A Homeobox protein arista 99.3 3.1E-12 1.1E-16 102.6 6.8 55 412-469 3-57 (60)
35 3rkq_A Homeobox protein NKX-2. 99.3 4E-12 1.4E-16 100.4 6.8 56 409-467 3-58 (58)
36 2ecb_A Zinc fingers and homeob 99.3 6.1E-12 2.1E-16 110.0 8.1 56 410-468 13-68 (89)
37 2cue_A Paired box protein PAX6 99.3 5.4E-12 1.8E-16 106.9 7.6 60 408-470 7-66 (80)
38 2kt0_A Nanog, homeobox protein 99.3 6.5E-12 2.2E-16 106.9 8.0 60 407-469 21-80 (84)
39 2dn0_A Zinc fingers and homeob 99.3 5.1E-12 1.7E-16 106.1 7.0 57 410-469 10-66 (76)
40 1zq3_P PRD-4, homeotic bicoid 99.3 5.4E-12 1.8E-16 103.8 6.4 58 409-469 3-60 (68)
41 1puf_A HOX-1.7, homeobox prote 99.3 9.6E-12 3.3E-16 104.6 8.0 60 407-469 12-71 (77)
42 1ahd_P Antennapedia protein mu 99.3 4.9E-12 1.7E-16 104.2 6.1 58 409-469 3-60 (68)
43 1ftt_A TTF-1 HD, thyroid trans 99.3 6.7E-12 2.3E-16 103.3 6.8 58 409-469 3-60 (68)
44 1wh5_A ZF-HD homeobox family p 99.3 7.7E-12 2.6E-16 106.7 7.4 61 408-468 17-78 (80)
45 3nau_A Zinc fingers and homeob 99.3 5.2E-12 1.8E-16 105.2 6.1 56 413-471 9-64 (66)
46 3a03_A T-cell leukemia homeobo 99.2 7.8E-12 2.7E-16 99.2 6.3 52 414-468 3-54 (56)
47 1yz8_P Pituitary homeobox 2; D 99.2 2.9E-12 9.9E-17 105.3 3.8 58 409-469 4-61 (68)
48 2da5_A Zinc fingers and homeob 99.2 1.2E-11 4.1E-16 103.8 7.5 57 410-469 9-65 (75)
49 3a01_A Homeodomain-containing 99.2 1E-11 3.5E-16 108.5 7.2 60 407-469 16-75 (93)
50 2ly9_A Zinc fingers and homeob 99.2 1.6E-11 5.6E-16 102.1 8.0 59 408-469 6-64 (74)
51 2m0c_A Homeobox protein arista 99.2 1.4E-11 4.9E-16 102.2 7.6 59 408-469 9-67 (75)
52 1b8i_A Ultrabithorax, protein 99.2 1.1E-11 3.8E-16 105.5 6.8 59 408-469 20-78 (81)
53 3nar_A ZHX1, zinc fingers and 99.2 1.5E-11 5E-16 107.8 7.7 65 408-475 25-89 (96)
54 2hi3_A Homeodomain-only protei 99.2 1.2E-11 4.1E-16 103.1 6.8 57 410-469 4-61 (73)
55 1uhs_A HOP, homeodomain only p 99.2 1.2E-11 4.2E-16 102.6 6.8 58 410-469 3-60 (72)
56 2cuf_A FLJ21616 protein; homeo 99.2 1.8E-11 6.2E-16 106.9 8.0 60 407-469 6-80 (95)
57 3d1n_I POU domain, class 6, tr 99.2 1.7E-11 5.8E-16 115.4 8.1 59 407-468 92-150 (151)
58 2d5v_A Hepatocyte nuclear fact 99.2 1.5E-11 5E-16 116.8 7.4 59 408-469 97-155 (164)
59 2r5y_A Homeotic protein sex co 99.2 1.9E-11 6.5E-16 105.2 6.2 59 408-469 28-86 (88)
60 2dmp_A Zinc fingers and homeob 99.2 4.4E-11 1.5E-15 103.8 7.8 56 410-468 15-70 (89)
61 1b72_A Protein (homeobox prote 99.1 3.4E-11 1.2E-15 105.6 6.1 59 408-469 34-92 (97)
62 2e19_A Transcription factor 8; 99.1 6.9E-11 2.4E-15 97.0 6.7 54 412-468 7-60 (64)
63 1au7_A Protein PIT-1, GHF-1; c 99.1 8.5E-11 2.9E-15 110.4 7.5 60 407-469 86-145 (146)
64 1wh7_A ZF-HD homeobox family p 99.1 7.9E-11 2.7E-15 100.7 6.4 60 408-468 17-78 (80)
65 1e3o_C Octamer-binding transcr 99.1 1.3E-10 4.3E-15 110.6 7.3 59 408-469 101-159 (160)
66 2xsd_C POU domain, class 3, tr 99.1 1.2E-10 4.2E-15 111.4 6.8 59 408-469 99-157 (164)
67 2da6_A Hepatocyte nuclear fact 99.1 2.1E-10 7.4E-15 102.7 7.8 60 407-469 5-85 (102)
68 2l9r_A Homeobox protein NKX-3. 99.1 1.8E-10 6.2E-15 96.2 6.7 53 414-469 10-62 (69)
69 2cqx_A LAG1 longevity assuranc 99.1 9.5E-11 3.2E-15 98.2 4.9 57 410-469 10-67 (72)
70 1lfb_A Liver transcription fac 99.0 3.5E-10 1.2E-14 100.5 6.1 60 407-469 8-88 (99)
71 3l1p_A POU domain, class 5, tr 99.0 2.7E-10 9.4E-15 107.9 5.2 58 408-468 96-153 (155)
72 1wi3_A DNA-binding protein SAT 99.0 1.4E-09 4.8E-14 91.3 7.9 60 407-468 6-65 (71)
73 1x2m_A LAG1 longevity assuranc 98.9 7.9E-10 2.7E-14 91.4 5.7 50 418-469 10-59 (64)
74 1ic8_A Hepatocyte nuclear fact 98.9 2E-09 6.8E-14 106.0 7.6 59 407-468 114-193 (194)
75 1mh3_A Maltose binding-A1 home 98.8 1.9E-09 6.6E-14 112.0 6.0 53 412-467 369-421 (421)
76 2h8r_A Hepatocyte nuclear fact 98.8 2.8E-09 9.6E-14 106.9 6.8 58 406-466 140-218 (221)
77 2da7_A Zinc finger homeobox pr 98.7 1.6E-08 5.6E-13 85.2 6.2 46 417-465 14-59 (71)
78 2nzz_A Penetratin conjugated G 95.8 0.0012 3.9E-08 49.4 -0.8 20 453-472 1-20 (37)
79 2ys9_A Homeobox and leucine zi 93.2 0.058 2E-06 45.5 3.4 45 415-462 13-57 (70)
80 1hlv_A CENP-B, major centromer 71.4 8.5 0.00029 33.7 6.6 50 410-465 3-52 (131)
81 3hug_A RNA polymerase sigma fa 62.0 7.8 0.00027 32.3 4.2 49 414-470 37-85 (92)
82 1fse_A GERE; helix-turn-helix 55.7 14 0.00048 28.8 4.5 58 408-474 5-62 (74)
83 2o8x_A Probable RNA polymerase 53.5 12 0.00042 28.8 3.8 50 413-470 14-63 (70)
84 1ku3_A Sigma factor SIGA; heli 52.4 12 0.0004 29.9 3.6 55 413-471 9-64 (73)
85 1tty_A Sigma-A, RNA polymerase 51.9 9 0.00031 31.8 2.9 56 414-473 18-73 (87)
86 3mzy_A RNA polymerase sigma-H 51.2 17 0.00057 31.8 4.7 47 414-469 109-155 (164)
87 2elh_A CG11849-PA, LD40883P; s 50.1 44 0.0015 27.7 6.9 46 408-461 16-61 (87)
88 1tc3_C Protein (TC3 transposas 48.5 23 0.00079 24.6 4.3 42 413-462 4-45 (51)
89 2glo_A Brinker CG9653-PA; prot 48.4 19 0.00066 27.7 4.2 47 412-462 3-49 (59)
90 2p7v_B Sigma-70, RNA polymeras 47.3 9.1 0.00031 30.1 2.1 54 414-471 5-58 (68)
91 1je8_A Nitrate/nitrite respons 45.7 19 0.00066 29.6 4.0 55 413-476 20-74 (82)
92 3t72_q RNA polymerase sigma fa 43.3 40 0.0014 29.3 5.8 62 414-479 19-80 (99)
93 1x3u_A Transcriptional regulat 43.0 17 0.00059 28.8 3.2 54 414-476 16-69 (79)
94 1p4w_A RCSB; solution structur 40.6 38 0.0013 29.3 5.2 54 411-473 31-84 (99)
95 2iw5_B Protein corest, REST co 40.1 47 0.0016 33.7 6.4 70 410-486 131-201 (235)
96 3lsg_A Two-component response 39.3 45 0.0015 27.8 5.4 42 418-462 2-43 (103)
97 1wlx_A Alpha-actinin 4; three- 38.4 82 0.0028 29.2 7.3 70 290-361 44-116 (129)
98 1s7o_A Hypothetical UPF0122 pr 36.3 56 0.0019 28.8 5.7 49 414-470 22-70 (113)
99 1rp3_A RNA polymerase sigma fa 35.5 31 0.0011 32.1 4.2 49 413-469 186-234 (239)
100 1or7_A Sigma-24, RNA polymeras 35.4 37 0.0013 30.8 4.5 48 414-469 140-187 (194)
101 1xsv_A Hypothetical UPF0122 pr 34.8 35 0.0012 30.0 4.1 49 414-470 25-73 (113)
102 2rnj_A Response regulator prot 34.3 24 0.00081 29.3 2.8 53 413-474 28-80 (91)
103 1iuf_A Centromere ABP1 protein 33.5 34 0.0012 31.1 4.0 48 409-462 6-60 (144)
104 3c57_A Two component transcrip 33.3 35 0.0012 28.8 3.7 48 413-469 26-73 (95)
105 4afl_A P29ING4, inhibitor of g 28.4 2.8E+02 0.0097 23.8 9.7 69 297-367 17-86 (104)
106 2jn6_A Protein CGL2762, transp 26.0 78 0.0027 26.2 4.6 46 412-463 3-48 (97)
107 2a6c_A Helix-turn-helix motif; 25.8 59 0.002 26.2 3.7 25 441-465 34-58 (83)
108 2q1z_A RPOE, ECF SIGE; ECF sig 25.7 30 0.001 31.2 2.1 48 414-469 135-182 (184)
109 1pdn_C Protein (PRD paired); p 25.5 1.2E+02 0.0041 25.3 5.8 47 412-461 73-126 (128)
110 3mn2_A Probable ARAC family tr 25.4 1E+02 0.0035 25.8 5.3 40 419-462 3-42 (108)
111 3clo_A Transcriptional regulat 24.2 73 0.0025 31.2 4.8 55 413-476 196-250 (258)
112 1jko_C HIN recombinase, DNA-in 24.1 88 0.003 22.0 4.1 41 414-462 5-45 (52)
113 1we3_A CPN60(groel); chaperoni 23.7 2.3E+02 0.0077 31.6 9.0 60 289-349 356-428 (543)
114 2jpc_A SSRB; DNA binding prote 23.7 88 0.003 23.4 4.2 36 442-477 17-52 (61)
115 3bd1_A CRO protein; transcript 23.5 42 0.0014 26.7 2.4 23 441-463 14-36 (79)
116 3b7h_A Prophage LP1 protein 11 23.0 56 0.0019 25.3 3.0 23 441-463 23-45 (78)
117 2xi8_A Putative transcription 23.0 39 0.0013 25.1 2.0 23 441-463 17-39 (66)
118 1gs9_A Apolipoprotein E, APOE4 22.9 1.9E+02 0.0067 27.3 7.2 64 293-358 94-158 (165)
119 2r1j_L Repressor protein C2; p 22.6 40 0.0014 25.2 2.0 23 441-463 21-43 (68)
120 3oio_A Transcriptional regulat 22.1 1.1E+02 0.0037 25.9 4.9 41 418-462 7-47 (113)
121 1zug_A Phage 434 CRO protein; 21.8 41 0.0014 25.5 1.9 24 441-464 19-42 (71)
122 1k78_A Paired box protein PAX5 21.5 2.9E+02 0.0099 24.2 7.8 49 412-463 88-143 (149)
123 2rn7_A IS629 ORFA; helix, all 20.5 1.7E+02 0.0058 24.6 5.7 49 412-461 4-53 (108)
124 3qq6_A HTH-type transcriptiona 20.1 68 0.0023 25.6 3.0 20 442-461 27-46 (78)
125 1kp8_A Groel protein; chaperon 20.0 1.4E+02 0.0048 33.3 6.5 58 289-347 357-427 (547)
No 1
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.70 E-value=9e-18 Score=147.04 Aligned_cols=61 Identities=52% Similarity=0.880 Sum_probs=57.8
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccchhHHH
Q 005863 413 RGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPMIEE 473 (673)
Q Consensus 413 R~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp~i~e 473 (673)
.-||++++.+|++||.+|+.||||++++|..||++|||+..||+|||+|+|+|.|++++++
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 3599999999999999999999999999999999999999999999999999999987754
No 2
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.69 E-value=2.4e-17 Score=141.30 Aligned_cols=64 Identities=44% Similarity=0.813 Sum_probs=59.4
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccchhH
Q 005863 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPMI 471 (673)
Q Consensus 408 ~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp~i 471 (673)
.+|+++.|++.++.+|+.||.+|..||||+.++|..||.+|||+..||.+||+|+|+|.|++++
T Consensus 7 ~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~ 70 (83)
T 2dmn_A 7 GKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDML 70 (83)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHH
Confidence 4456677999999999999999999999999999999999999999999999999999988755
No 3
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=3.3e-17 Score=135.35 Aligned_cols=63 Identities=49% Similarity=0.930 Sum_probs=54.4
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccchhHHHH
Q 005863 412 QRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPMIEEM 474 (673)
Q Consensus 412 rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp~i~e~ 474 (673)
...||++++.+|+.||.+|+.||||+..+|..||.+|||+..||.+||+|+|+|.|++++++.
T Consensus 2 ~g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 2 SGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp ----CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC----
T ss_pred CCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 357999999999999999999999999999999999999999999999999999999988653
No 4
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=1.2e-16 Score=133.10 Aligned_cols=64 Identities=42% Similarity=0.746 Sum_probs=59.9
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccchhH
Q 005863 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPMI 471 (673)
Q Consensus 408 ~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp~i 471 (673)
.+|+++.|++.++.+|+.||.+|..+|||+.++|..||.+|||+..||.+||+|+|+|.|++++
T Consensus 7 ~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 7 GKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 4566677999999999999999999999999999999999999999999999999999998765
No 5
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.62 E-value=5.7e-16 Score=125.69 Aligned_cols=61 Identities=34% Similarity=0.647 Sum_probs=57.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 409 ~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
.|+++.|++.++.+|+.||.+|..+|||+.+++..||.++||+..||.+||+|+|+|.||+
T Consensus 4 rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 4 HIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 4667779999999999999999999999999999999999999999999999999998874
No 6
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.60 E-value=1.1e-15 Score=131.09 Aligned_cols=63 Identities=35% Similarity=0.667 Sum_probs=58.6
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccchhH
Q 005863 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPMI 471 (673)
Q Consensus 409 ~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp~i 471 (673)
+|+|+.|++.++.+|+.||.+|..+|||+..+|..||.++||+..||.+||+|+|+|.|+...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 64 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccc
Confidence 467778999999999999999999999999999999999999999999999999999888754
No 7
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.59 E-value=1.3e-15 Score=126.76 Aligned_cols=61 Identities=36% Similarity=0.700 Sum_probs=57.6
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 409 ~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
+|+++.|++.++.+|+.||.+|..+|||+..+|..||.++||+..||.+||+|+|+|.|+.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 62 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 62 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccc
Confidence 4677789999999999999999999999999999999999999999999999999998775
No 8
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.59 E-value=1.5e-15 Score=121.85 Aligned_cols=59 Identities=27% Similarity=0.429 Sum_probs=55.5
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 411 PQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 411 ~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
+++.|++.++.+|+.||..|+++|||+..+|..||.++||+..||.+||+|+|+|.++.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 35679999999999999999999999999999999999999999999999999997763
No 9
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.56 E-value=3.4e-15 Score=127.68 Aligned_cols=60 Identities=27% Similarity=0.441 Sum_probs=56.4
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccchhH
Q 005863 412 QRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPMI 471 (673)
Q Consensus 412 rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp~i 471 (673)
++.|+..++.+|+.||..|+.+|||+..++..||.++||+..||.+||+|+|+|.|+..+
T Consensus 6 r~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 6 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp CCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 344999999999999999999999999999999999999999999999999999988755
No 10
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.55 E-value=6.6e-15 Score=126.61 Aligned_cols=60 Identities=27% Similarity=0.396 Sum_probs=55.7
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhcc
Q 005863 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLW 467 (673)
Q Consensus 408 ~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~Rlk 467 (673)
..++++.|++.++.+|+.||..|+.+|||+..+|..||.++||+..||.+||+|+|+|.|
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 334566699999999999999999999999999999999999999999999999999965
No 11
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.44 E-value=9e-14 Score=118.54 Aligned_cols=59 Identities=17% Similarity=0.410 Sum_probs=54.6
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccchhH
Q 005863 410 RPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPMI 471 (673)
Q Consensus 410 R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp~i 471 (673)
+++++|+++++.+|++||.. +|||+..++..||+.|||+..||.+||+|+|.|.|+..+
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~---~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQ---CQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 46678999999999999998 899999999999999999999999999999999877544
No 12
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.41 E-value=2.2e-13 Score=109.36 Aligned_cols=57 Identities=26% Similarity=0.351 Sum_probs=47.9
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhcc
Q 005863 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLW 467 (673)
Q Consensus 408 ~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~Rlk 467 (673)
.+|++..|+..++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.+
T Consensus 5 ~rr~Rt~ft~~q~~~Le~~f~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 5 SPKGKSSISPQARAFLEEVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp -------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 3456677999999999999998 89999999999999999999999999999999853
No 13
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.39 E-value=4.8e-13 Score=109.22 Aligned_cols=60 Identities=30% Similarity=0.365 Sum_probs=55.4
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccchh
Q 005863 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPM 470 (673)
Q Consensus 408 ~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp~ 470 (673)
.+|++..|+..++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAA---NPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 3467778999999999999998 89999999999999999999999999999999988753
No 14
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.36 E-value=1.2e-12 Score=108.11 Aligned_cols=60 Identities=18% Similarity=0.276 Sum_probs=55.3
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 407 HAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 407 ~~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
..+|++..|+..++.+|+.+|.. +|||+..++..||.++||+..||.+||+|+|.|.++.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (70)
T 2cra_A 6 SGRKKRIPYSKGQLRELEREYAA---NKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKS 65 (70)
T ss_dssp CCCCSCCCSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSS
T ss_pred CCCCCCCcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhccc
Confidence 34566777999999999999988 9999999999999999999999999999999998774
No 15
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.2e-12 Score=108.06 Aligned_cols=59 Identities=22% Similarity=0.417 Sum_probs=54.6
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 408 ~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
.+|++..|+..++.+|+.||.. +|||+..++..||.++||+..||.+||+|+|.|.++.
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2dmu_A 7 GRRHRTIFTDEQLEALENLFQE---TKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRS 65 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCCCHHHeehcccccccccccc
Confidence 4566777999999999999988 9999999999999999999999999999999997764
No 16
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.35 E-value=1.2e-12 Score=104.11 Aligned_cols=56 Identities=20% Similarity=0.366 Sum_probs=52.7
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccc
Q 005863 410 RPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWK 468 (673)
Q Consensus 410 R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkK 468 (673)
|++..|+..++.+|+.+|.. +|||+..++..||.++||+..||.+||+|+|.|.++
T Consensus 2 r~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 2 KPRTPFTTAQLLALERKFRQ---KQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 56777999999999999988 999999999999999999999999999999999764
No 17
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.35 E-value=1.5e-12 Score=107.27 Aligned_cols=59 Identities=22% Similarity=0.413 Sum_probs=54.9
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 408 ~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
.+|++..|+..++.+|+.+|.. +|||+..++..||.++||+..||.+||+|+|.|.+|.
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da2_A 7 GRSSRTRFTDYQLRVLQDFFDA---NAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKS 65 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhc
Confidence 4566777999999999999988 9999999999999999999999999999999998774
No 18
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=4.3e-13 Score=113.49 Aligned_cols=61 Identities=11% Similarity=0.112 Sum_probs=54.7
Q ss_pred cCCCCCCCChhHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccc
Q 005863 408 AWRPQRGLPESSVSILRAWLFEH-FLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWK 468 (673)
Q Consensus 408 ~~R~rR~Lpk~a~~iLr~Wf~eH-~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkK 468 (673)
.+|+|..|+.+++.+|+.||..+ ..+|||+..++..||.++||+..||.+||+|+|+|.++
T Consensus 8 ~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk 69 (80)
T 2da4_A 8 ALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRL 69 (80)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhh
Confidence 44566679999999999999885 44499999999999999999999999999999999766
No 19
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=2.3e-12 Score=108.78 Aligned_cols=59 Identities=22% Similarity=0.441 Sum_probs=54.8
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 408 ~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
.+|+++.|+.+++.+|+.||.. +|||+..++..||.++||+..||.+||+|+|.|.++.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (80)
T 2dmq_A 7 GKRMRTSFKHHQLRTMKSYFAI---NHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRN 65 (80)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHH
Confidence 4567778999999999999988 8999999999999999999999999999999998764
No 20
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.34 E-value=1.2e-12 Score=107.95 Aligned_cols=60 Identities=18% Similarity=0.439 Sum_probs=55.1
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 407 HAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 407 ~~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
..+|++..|+..++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da1_A 6 SGKRPRTRITDDQLRVLRQYFDI---NNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQS 65 (70)
T ss_dssp CCCSCSCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhh
Confidence 35567778999999999999988 8999999999999999999999999999999997764
No 21
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.34 E-value=1.4e-12 Score=104.64 Aligned_cols=58 Identities=19% Similarity=0.350 Sum_probs=53.6
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 409 ~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
+|++..|+..++.+|+.+|.. +|||+..++..||.++||+..||.+||+|+|.|.++.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYK---ENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 466778999999999999988 8999999999999999999999999999999997763
No 22
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.34 E-value=1.4e-12 Score=104.99 Aligned_cols=57 Identities=25% Similarity=0.472 Sum_probs=51.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccc
Q 005863 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWK 468 (673)
Q Consensus 409 ~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkK 468 (673)
+|++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.+|
T Consensus 4 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 4 KRPRTAFSSEQLARLKREFNE---NRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ---CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 456777999999999999988 999999999999999999999999999999999765
No 23
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.34 E-value=1.3e-12 Score=109.88 Aligned_cols=60 Identities=25% Similarity=0.322 Sum_probs=55.0
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 407 HAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 407 ~~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
..+|+|..|+.+++.+|+.||.. +|||+..++..||.++||+..||.+||+|+|.|.+|.
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~f~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 75 (80)
T 2da3_A 16 RDKRLRTTITPEQLEILYQKYLL---DSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKS 75 (80)
T ss_dssp CCTTCCSSCCTTTHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhh
Confidence 34566777999999999999998 8999999999999999999999999999999998764
No 24
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.33 E-value=1.6e-12 Score=107.40 Aligned_cols=59 Identities=25% Similarity=0.297 Sum_probs=54.2
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 408 ~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
.+|++..|+..++.+|+.||.. +|||+..++..||.++||+..||.+||+|+|.|.++.
T Consensus 7 ~~r~R~~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2e1o_A 7 GKGGQVRFSNDQTIELEKKFET---QKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRS 65 (70)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCC
Confidence 3456777999999999999988 9999999999999999999999999999999997664
No 25
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=2.2e-12 Score=109.32 Aligned_cols=60 Identities=27% Similarity=0.395 Sum_probs=55.3
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 407 HAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 407 ~~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
..+|++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.+|.
T Consensus 16 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 16 KGRRSRTVFTELQLMGLEKRFEK---QKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp CCCCSCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcc
Confidence 34566777999999999999998 9999999999999999999999999999999998774
No 26
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=1.6e-12 Score=107.42 Aligned_cols=59 Identities=25% Similarity=0.388 Sum_probs=54.6
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 408 ~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
.+|++..|+..++.+|+.+|.. +|||+..++..||.++||+..||.+||+|+|.|.+|.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 7 GRKPRTIYSSFQLAALQRRFQK---TQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCSSCSSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 4566777999999999999987 9999999999999999999999999999999998774
No 27
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.33 E-value=2.3e-12 Score=107.49 Aligned_cols=61 Identities=20% Similarity=0.246 Sum_probs=55.7
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 406 RHAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 406 r~~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
...+|++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 65 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYAT---NKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 65 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHH---TSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhh---CCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHH
Confidence 345567777999999999999988 8999999999999999999999999999999998764
No 28
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.32 E-value=2e-12 Score=109.67 Aligned_cols=60 Identities=27% Similarity=0.417 Sum_probs=55.1
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 407 HAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 407 ~~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
..+|+|..|+..++.+|+.||.. +|||+..++..||.++||+..||.+||+|+|.|.++.
T Consensus 17 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~ 76 (81)
T 1fjl_A 17 KQRRSRTTFSASQLDELERAFER---TQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQ 76 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhh
Confidence 35566777999999999999988 8999999999999999999999999999999997764
No 29
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.32 E-value=2.1e-12 Score=104.68 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=53.5
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 409 ~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
+|++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.+|.
T Consensus 4 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 4 KRTRTAYTRAQLLELEKEFLF---NKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 466777999999999999988 9999999999999999999999999999999997763
No 30
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.32 E-value=3.1e-12 Score=107.61 Aligned_cols=61 Identities=20% Similarity=0.253 Sum_probs=55.5
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 406 RHAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 406 r~~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
...+|++..|+..++.+|+.+|.. +|||+..++..||.++||+..||.+||+|+|.|.++.
T Consensus 7 ~~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~ 67 (77)
T 1nk2_P 7 NKKRKRRVLFTKAQTYELERRFRQ---QRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 67 (77)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhh
Confidence 345566777999999999999988 9999999999999999999999999999999998764
No 31
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.32 E-value=1.8e-12 Score=106.08 Aligned_cols=58 Identities=22% Similarity=0.405 Sum_probs=54.0
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 409 ~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
+|++..|+..++.+|+.||.. +|||+..++..||.++||+..||.+||+|+|.|.++.
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRV---NCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRS 59 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCS
T ss_pred cCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHh
Confidence 466777999999999999977 9999999999999999999999999999999997764
No 32
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.31 E-value=3e-12 Score=108.33 Aligned_cols=60 Identities=20% Similarity=0.365 Sum_probs=54.8
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 407 HAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 407 ~~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
..+|+|..|+..++.+|+.+|.. +|||+..++..||.++||+..||.+||+|+|.|.++.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~ 65 (80)
T 2dms_A 6 SGRRERTTFTRAQLDVLEALFAK---TRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 65 (80)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHH
Confidence 34566777999999999999998 8999999999999999999999999999999997653
No 33
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.30 E-value=3.3e-12 Score=103.05 Aligned_cols=57 Identities=19% Similarity=0.295 Sum_probs=51.2
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccc
Q 005863 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWK 468 (673)
Q Consensus 409 ~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkK 468 (673)
+|++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++
T Consensus 4 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 60 (62)
T 2vi6_A 4 QKMRTVFSQAQLCALKDRFQK---QKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60 (62)
T ss_dssp ----CCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGG
T ss_pred CCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhh
Confidence 456677999999999999988 999999999999999999999999999999999876
No 34
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.30 E-value=3.1e-12 Score=102.60 Aligned_cols=55 Identities=22% Similarity=0.350 Sum_probs=49.6
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 412 QRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 412 rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
|..|+..++.+|+.+|.. +|||+..++..||.++||+..||.+||+|+|.|.++.
T Consensus 3 Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 57 (60)
T 3a02_A 3 HMTFTSFQLEELEKAFSR---THYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57 (60)
T ss_dssp --CCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC--
T ss_pred CcccCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhh
Confidence 567999999999999988 9999999999999999999999999999999998764
No 35
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.29 E-value=4e-12 Score=100.39 Aligned_cols=56 Identities=25% Similarity=0.321 Sum_probs=51.6
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhcc
Q 005863 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLW 467 (673)
Q Consensus 409 ~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~Rlk 467 (673)
+|++..|+..++.+|+.+|.. +|||+..++..||.++||+..||.+||+|+|.|.|
T Consensus 3 rr~Rt~~t~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 3 RKPRVLFSQAQVYELERRFKQ---QRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 356667999999999999987 99999999999999999999999999999999854
No 36
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.28 E-value=6.1e-12 Score=110.02 Aligned_cols=56 Identities=18% Similarity=0.275 Sum_probs=51.9
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccc
Q 005863 410 RPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWK 468 (673)
Q Consensus 410 R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkK 468 (673)
++.+.|+.+++.+|+.||.. ++||+..+|..||..|||+..||.+||+|+|.|.++
T Consensus 13 ~k~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk 68 (89)
T 2ecb_A 13 QKFKEKTAEQLRVLQASFLN---SSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKAL 68 (89)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHS
T ss_pred hhhccCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCcChHHCeecccccchHHHH
Confidence 34558999999999999988 999999999999999999999999999999999665
No 37
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.28 E-value=5.4e-12 Score=106.88 Aligned_cols=60 Identities=18% Similarity=0.332 Sum_probs=55.1
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccchh
Q 005863 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPM 470 (673)
Q Consensus 408 ~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp~ 470 (673)
.+|+|..|+..++.+|+.+|.. +|||+..++..||.++||+..||.+||+|+|.|.++..
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (80)
T 2cue_A 7 GQRNRTSFTQEQIEALEKEFER---THYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREE 66 (80)
T ss_dssp SCCCCCCSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHh
Confidence 4566777999999999999987 99999999999999999999999999999999988753
No 38
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.28 E-value=6.5e-12 Score=106.86 Aligned_cols=60 Identities=18% Similarity=0.266 Sum_probs=55.2
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 407 HAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 407 ~~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
..+|+|..|+..++.+|+.+|.. +|||+..++..||.++||+..||.+||+|+|.|.++.
T Consensus 21 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 80 (84)
T 2kt0_A 21 KKQKTRTVFSSTQLCVLNDRFQR---QKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRW 80 (84)
T ss_dssp CSCCCSSCCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 45566777999999999999988 9999999999999999999999999999999998764
No 39
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=5.1e-12 Score=106.08 Aligned_cols=57 Identities=26% Similarity=0.387 Sum_probs=53.2
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 410 RPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 410 R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
+.++.|++.++.+|+.||.. +|||+..++..||+++||+..||.+||+|+|.|.||.
T Consensus 10 ~~R~~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~ 66 (76)
T 2dn0_A 10 IYKNKKSHEQLSALKGSFCR---NQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNL 66 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---SSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSC
T ss_pred CCCccCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHh
Confidence 34677999999999999988 9999999999999999999999999999999998774
No 40
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.26 E-value=5.4e-12 Score=103.84 Aligned_cols=58 Identities=22% Similarity=0.298 Sum_probs=53.8
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 409 ~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
+|++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~ 60 (68)
T 1zq3_P 3 RRTRTTFTSSQIAELEQHFLQ---GRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQ 60 (68)
T ss_dssp SCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHH
Confidence 456777999999999999988 9999999999999999999999999999999997764
No 41
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.26 E-value=9.6e-12 Score=104.65 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=55.1
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 407 HAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 407 ~~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
..+|++..|+..++.+|+.+|.. +|||+..++..||.++||+..||.+||+|+|.|.++.
T Consensus 12 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 71 (77)
T 1puf_A 12 STRKKRCPYTKHQTLELEKEFLF---NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 71 (77)
T ss_dssp TTSCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 34566777999999999999988 8999999999999999999999999999999998764
No 42
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.26 E-value=4.9e-12 Score=104.22 Aligned_cols=58 Identities=21% Similarity=0.280 Sum_probs=53.5
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 409 ~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
+|++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 60 (68)
T 1ahd_P 3 KRGRQTYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 60 (68)
T ss_dssp SCTTCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHh
Confidence 356677999999999999998 8999999999999999999999999999999997663
No 43
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.26 E-value=6.7e-12 Score=103.28 Aligned_cols=58 Identities=22% Similarity=0.310 Sum_probs=53.5
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 409 ~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
+|++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 60 (68)
T 1ftt_A 3 RKRRVLFSQAQVYELERRFKQ---QKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 60 (68)
T ss_dssp SSSCSSCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCccCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhh
Confidence 356667999999999999988 9999999999999999999999999999999997764
No 44
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.26 E-value=7.7e-12 Score=106.73 Aligned_cols=61 Identities=11% Similarity=0.100 Sum_probs=55.2
Q ss_pred cCCCCCCCChhHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccc
Q 005863 408 AWRPQRGLPESSVSILRAWLFE-HFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWK 468 (673)
Q Consensus 408 ~~R~rR~Lpk~a~~iLr~Wf~e-H~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkK 468 (673)
.+|+|..|+.+++..|+.+|.. |+.+|||+..++..||..+||+..||.+||+|+|.|+++
T Consensus 17 ~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 17 RKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp SCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 4566677999999999999885 677899999999999999999999999999999999765
No 45
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.26 E-value=5.2e-12 Score=105.15 Aligned_cols=56 Identities=25% Similarity=0.560 Sum_probs=50.7
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccchhH
Q 005863 413 RGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPMI 471 (673)
Q Consensus 413 R~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp~i 471 (673)
|+-+++++..|+.+|.. +|||+..|+..||+.|||+..||.+||+|+|.|+++..+
T Consensus 9 ~~~~~~Ql~~LE~~F~~---~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~~ 64 (66)
T 3nau_A 9 RKKTKEQIAHLKASFLQ---SQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGIV 64 (66)
T ss_dssp --CCHHHHHHHHHHHHG---GGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccCc
Confidence 44578999999999999 999999999999999999999999999999999887544
No 46
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.24 E-value=7.8e-12 Score=99.22 Aligned_cols=52 Identities=27% Similarity=0.457 Sum_probs=49.1
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccc
Q 005863 414 GLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWK 468 (673)
Q Consensus 414 ~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkK 468 (673)
.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.+|
T Consensus 3 ~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr 54 (56)
T 3a03_A 3 SFSRSQVLELERRFLR---QKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54 (56)
T ss_dssp -CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHh---cCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhcc
Confidence 5899999999999988 999999999999999999999999999999999776
No 47
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.24 E-value=2.9e-12 Score=105.30 Aligned_cols=58 Identities=26% Similarity=0.379 Sum_probs=53.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 409 ~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
+|++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 4 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 61 (68)
T 1yz8_P 4 RRQRTHFTSQQLQQLEATFQR---NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 61 (68)
T ss_dssp SCSCCCCCHHHHHHHHHHHTT---CSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHH
Confidence 456777999999999999988 9999999999999999999999999999999997664
No 48
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=1.2e-11 Score=103.82 Aligned_cols=57 Identities=18% Similarity=0.341 Sum_probs=52.9
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 410 RPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 410 R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
++++.|+..++.+|+.+|.. +|||+..++..||.++||+..||.+||+|+|.|.++.
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQ---NPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAE 65 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHS
T ss_pred CCCccCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHh
Confidence 45667999999999999988 9999999999999999999999999999999997653
No 49
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.24 E-value=1e-11 Score=108.45 Aligned_cols=60 Identities=22% Similarity=0.420 Sum_probs=55.0
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 407 HAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 407 ~~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
..+|++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 75 (93)
T 3a01_A 16 KRKKPRTSFTRIQVAELEKRFHK---QKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQ 75 (93)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhh
Confidence 34566677999999999999988 8999999999999999999999999999999998775
No 50
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.23 E-value=1.6e-11 Score=102.08 Aligned_cols=59 Identities=25% Similarity=0.482 Sum_probs=54.7
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 408 ~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
.++.|..|+..++.+|+.+|.. +|||+..++..||.++||+..||.+||+|+|.|.+|.
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 64 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLK---NQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNS 64 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhh
Confidence 4566778999999999999998 9999999999999999999999999999999998764
No 51
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.23 E-value=1.4e-11 Score=102.25 Aligned_cols=59 Identities=24% Similarity=0.353 Sum_probs=54.2
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 408 ~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
.+|++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.+|.
T Consensus 9 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 67 (75)
T 2m0c_A 9 KRRNRTTFTSYQLEELEKVFQK---THYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 67 (75)
T ss_dssp CCSCSCSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHH
Confidence 3456667999999999999998 8999999999999999999999999999999998774
No 52
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.23 E-value=1.1e-11 Score=105.45 Aligned_cols=59 Identities=22% Similarity=0.329 Sum_probs=52.4
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 408 ~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
.+|++..|+..++.+|+.+|.. +|||+..++..||.++||+..||.+||+|+|.|.||.
T Consensus 20 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 78 (81)
T 1b8i_A 20 RRRGRQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKE 78 (81)
T ss_dssp ----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCcccCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhh
Confidence 4456777999999999999998 9999999999999999999999999999999998764
No 53
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.23 E-value=1.5e-11 Score=107.81 Aligned_cols=65 Identities=18% Similarity=0.323 Sum_probs=57.8
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccchhHHHHH
Q 005863 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPMIEEMY 475 (673)
Q Consensus 408 ~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp~i~e~~ 475 (673)
..|+|+.|+..++.+|+.+|.. +|||+..++..||.++||+..||.+||+|+|.|.||..++-++
T Consensus 25 ~~r~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk~~~ 89 (96)
T 3nar_A 25 STGKICKKTPEQLHMLKSAFVR---TQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKWYY 89 (96)
T ss_dssp --CCSSSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcccHHH
Confidence 3466778999999999999988 9999999999999999999999999999999999987765543
No 54
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.23 E-value=1.2e-11 Score=103.09 Aligned_cols=57 Identities=21% Similarity=0.371 Sum_probs=52.5
Q ss_pred CCCCCCChhHHHHHHHHHH-HhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 410 RPQRGLPESSVSILRAWLF-EHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 410 R~rR~Lpk~a~~iLr~Wf~-eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
+++..|+..++.+|+.+|. . +|||+..++..||.++||+..||.+||+|+|.|.++.
T Consensus 4 k~Rt~ft~~Q~~~Le~~F~~~---~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~ 61 (73)
T 2hi3_A 4 QTVSGPTEDQVEILEYNFNKV---NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 61 (73)
T ss_dssp SCCSSCCHHHHHHHHHHHHHT---TSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 4566799999999999998 5 8999999999999999999999999999999997764
No 55
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.22 E-value=1.2e-11 Score=102.60 Aligned_cols=58 Identities=19% Similarity=0.367 Sum_probs=52.6
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 410 RPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 410 R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
++++.|+..++.+|+.+|.. .+|||+..++..||.++||+..||.+||+|+|.|.++.
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~--~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~ 60 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNK--VNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 60 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHS--SCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHc--cCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhh
Confidence 46677999999999999972 18999999999999999999999999999999997764
No 56
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.22 E-value=1.8e-11 Score=106.88 Aligned_cols=60 Identities=17% Similarity=0.415 Sum_probs=55.0
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhC---------------CChHhHhhhhhhhHhhccch
Q 005863 407 HAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTG---------------LSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 407 ~~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTG---------------LS~~QVsNWF~NaR~RlkKp 469 (673)
..+|.|..|++.++.+|+.||.. +|||+..++..||..++ |+..||.+||+|+|.|.++.
T Consensus 6 ~~rr~R~~ft~~ql~~Le~~F~~---~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~ 80 (95)
T 2cuf_A 6 SGRGSRFTWRKECLAVMESYFNE---NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRR 80 (95)
T ss_dssp CCCCCSCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHH
Confidence 34566777999999999999999 99999999999999999 99999999999999997764
No 57
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.22 E-value=1.7e-11 Score=115.36 Aligned_cols=59 Identities=22% Similarity=0.414 Sum_probs=54.5
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccc
Q 005863 407 HAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWK 468 (673)
Q Consensus 407 ~~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkK 468 (673)
+.+|+|..|+..++.+|+.||.. +|||+..++..||+++||+..||.+||+|+|.|.||
T Consensus 92 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 92 KKRKRRTSFTPQAIEALNAYFEK---NPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 44556677999999999999998 999999999999999999999999999999999776
No 58
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.21 E-value=1.5e-11 Score=116.81 Aligned_cols=59 Identities=27% Similarity=0.399 Sum_probs=53.4
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 408 ~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
.+|+|..|+..++.+|+.||.. +|||+..+|..||.++||+..||.+||+|+|+|.|+.
T Consensus 97 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~ 155 (164)
T 2d5v_A 97 PKKPRLVFTDVQRRTLHAIFKE---NKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDK 155 (164)
T ss_dssp ---CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC
T ss_pred CCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHhhhcChhhhcccccc
Confidence 4566777999999999999999 8999999999999999999999999999999998774
No 59
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.18 E-value=1.9e-11 Score=105.24 Aligned_cols=59 Identities=20% Similarity=0.285 Sum_probs=52.8
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 408 ~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
.+|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.+|.
T Consensus 28 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 28 TKRQRTSYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp ---CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 4567778999999999999987 9999999999999999999999999999999997763
No 60
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=4.4e-11 Score=103.75 Aligned_cols=56 Identities=21% Similarity=0.347 Sum_probs=51.3
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccc
Q 005863 410 RPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWK 468 (673)
Q Consensus 410 R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkK 468 (673)
++.++++..++.+|+.+|.. +|||+..++..||+++||+..||.+||+|+|.|.++
T Consensus 15 ~k~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~ 70 (89)
T 2dmp_A 15 QKFKEKTQGQVKILEDSFLK---SSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDS 70 (89)
T ss_dssp SCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred cccccCCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHH
Confidence 34455999999999999988 899999999999999999999999999999999654
No 61
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.15 E-value=3.4e-11 Score=105.56 Aligned_cols=59 Identities=19% Similarity=0.276 Sum_probs=52.8
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 408 ~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
.+|+|..|+..++.+|+.+|.. ++||+..++..||.++||+..||.+||+|+|.|.++.
T Consensus 34 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 92 (97)
T 1b72_A 34 PSGLRTNFTTRQLTELEKEFHF---NKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKR 92 (97)
T ss_dssp ---CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHH
Confidence 4566777999999999999987 8999999999999999999999999999999997764
No 62
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=6.9e-11 Score=96.98 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=49.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccc
Q 005863 412 QRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWK 468 (673)
Q Consensus 412 rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkK 468 (673)
...+.++++.+|+.+|.. ++||+..++..||+++||+..||.+||+|+|.|.++
T Consensus 7 ~~~p~~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYAL---NAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 345678999999999977 999999999999999999999999999999999765
No 63
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.11 E-value=8.5e-11 Score=110.43 Aligned_cols=60 Identities=23% Similarity=0.340 Sum_probs=53.8
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 407 HAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 407 ~~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
..+|+|..|+..++.+|+.+|.. +|||+..++..||+++||+..||.+||+|+|.|.||.
T Consensus 86 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 86 RKRKRRTTISIAAKDALERHFGE---HSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCcCccHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 34566777999999999999998 9999999999999999999999999999999998763
No 64
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.11 E-value=7.9e-11 Score=100.73 Aligned_cols=60 Identities=12% Similarity=0.078 Sum_probs=53.3
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccc
Q 005863 408 AWRPQRGLPESSVSILRAWLFEHFL--HPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWK 468 (673)
Q Consensus 408 ~~R~rR~Lpk~a~~iLr~Wf~eH~~--nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkK 468 (673)
.+|+|..|+.+++.+|+ -|.+++- +|||+..++..||.++||+..||.+||+|+|.++++
T Consensus 17 ~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 17 TKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp SSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 44566679999999999 5777554 899999999999999999999999999999999775
No 65
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.08 E-value=1.3e-10 Score=110.57 Aligned_cols=59 Identities=17% Similarity=0.306 Sum_probs=53.2
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 408 ~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
.+|+|+.|+..++.+|+.+|.. +|||+..++..||+++||+..||.+||+|+|.|.||.
T Consensus 101 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 101 RRKKRTSIETNIRVALEKSFME---NQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ---CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCcCccccCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 4566777999999999999998 9999999999999999999999999999999998874
No 66
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.07 E-value=1.2e-10 Score=111.43 Aligned_cols=59 Identities=22% Similarity=0.309 Sum_probs=50.4
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 408 ~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
.+|+|+.|+..++.+|+.+|.. +|||+..++..||+++||+..||.+||+|+|.|.||.
T Consensus 99 ~rr~Rt~ft~~Ql~~LE~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 157 (164)
T 2xsd_C 99 KRKKRTSIEVGVKGALESHFLK---CPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRM 157 (164)
T ss_dssp -------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBS
T ss_pred CCCCceeccHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhc
Confidence 4556777999999999999998 9999999999999999999999999999999998774
No 67
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=2.1e-10 Score=102.74 Aligned_cols=60 Identities=22% Similarity=0.191 Sum_probs=54.6
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh---------------------CCChHhHhhhhhhhHhh
Q 005863 407 HAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQT---------------------GLSKNQVANWFINARVR 465 (673)
Q Consensus 407 ~~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qT---------------------GLS~~QVsNWF~NaR~R 465 (673)
..+|.|..|++.++.+|+.+|.. +|||+..+|+.||..+ .|+..+|.+||+|+|+|
T Consensus 5 ~~Rr~Rt~ft~~ql~~Le~~F~~---~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 5 SSGRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 45566777999999999999988 8999999999999999 79999999999999999
Q ss_pred ccch
Q 005863 466 LWKP 469 (673)
Q Consensus 466 lkKp 469 (673)
.++.
T Consensus 82 ~kr~ 85 (102)
T 2da6_A 82 EAFR 85 (102)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7764
No 68
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.07 E-value=1.8e-10 Score=96.17 Aligned_cols=53 Identities=26% Similarity=0.367 Sum_probs=50.1
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 414 GLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 414 ~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
-++..++..|+.+|.. +|||+..++..||+++||+..||.+||+|+|.|.||.
T Consensus 10 ~~t~~ql~~LE~~F~~---~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~ 62 (69)
T 2l9r_A 10 HMSHTQVIELERKFSH---QKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRK 62 (69)
T ss_dssp CCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCS
T ss_pred cCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhh
Confidence 4788999999999988 9999999999999999999999999999999998775
No 69
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.06 E-value=9.5e-11 Score=98.16 Aligned_cols=57 Identities=18% Similarity=0.177 Sum_probs=51.9
Q ss_pred CCCCCCChhHHHHHHHHH-HHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 410 RPQRGLPESSVSILRAWL-FEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 410 R~rR~Lpk~a~~iLr~Wf-~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
++++.++.++..+|+..| .. ++||+..++..||+++||+..||.+||+|+|.|.++.
T Consensus 10 k~r~r~~~~ql~~LE~~F~~~---~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 10 KDSPVNKVEPNDTLEKVFVSV---TKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCSCSCSTTHHHHHHHHT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCHHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 556668888999999999 66 8999999999999999999999999999999997764
No 70
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.00 E-value=3.5e-10 Score=100.51 Aligned_cols=60 Identities=23% Similarity=0.258 Sum_probs=51.6
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHH------------------hC---CChHhHhhhhhhhHhh
Q 005863 407 HAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQ------------------TG---LSKNQVANWFINARVR 465 (673)
Q Consensus 407 ~~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~q------------------TG---LS~~QVsNWF~NaR~R 465 (673)
..+|+|..|+..++.+|+.+|.. +|||+..+|..||.. +| |+..||.+||+|+|.+
T Consensus 8 k~rr~Rt~ft~~Ql~~LE~~F~~---~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 8 KGRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp -----CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCcCcCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 34566777999999999999988 999999999999999 88 9999999999999999
Q ss_pred ccch
Q 005863 466 LWKP 469 (673)
Q Consensus 466 lkKp 469 (673)
.++.
T Consensus 85 ~k~k 88 (99)
T 1lfb_A 85 EAFR 88 (99)
T ss_dssp TSCC
T ss_pred HHHh
Confidence 7664
No 71
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=98.98 E-value=2.7e-10 Score=107.85 Aligned_cols=58 Identities=24% Similarity=0.343 Sum_probs=53.5
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccc
Q 005863 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWK 468 (673)
Q Consensus 408 ~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkK 468 (673)
.+|+|..|+..++.+|+.+|.. +|||+..++..||.++||+..||.+||+|+|.|.||
T Consensus 96 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr 153 (155)
T 3l1p_A 96 RKRKRTSIENRVRWSLETMFLK---SPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKR 153 (155)
T ss_dssp SCCCCCCCCHHHHHHHHTTTTT---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCcccCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHcCCChhheeeccccccccccC
Confidence 4456677999999999999977 999999999999999999999999999999999776
No 72
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.96 E-value=1.4e-09 Score=91.31 Aligned_cols=60 Identities=20% Similarity=0.366 Sum_probs=54.3
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccc
Q 005863 407 HAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWK 468 (673)
Q Consensus 407 ~~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkK 468 (673)
..+|+|+.|+.++..+|+..|..- +|||+.++++.||.+|||++.+|..||+|+|--++-
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~--~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~ 65 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDV--GLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKH 65 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHH--CSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCS
T ss_pred CCCCCCccCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecC
Confidence 456778889999999999999874 799999999999999999999999999999987654
No 73
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.94 E-value=7.9e-10 Score=91.44 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 418 SSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 418 ~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
....+|+..|..+ ++||+..++..||+++||+..||..||+|+|.+.|+.
T Consensus 10 ~~~~~LE~~F~~~--~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 10 QPNAILEKVFTAI--TKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp CHHHHHHHHHHTT--CSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred hHHHHHHHHHHHc--CCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 4588999999543 8999999999999999999999999999999997653
No 74
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.89 E-value=2e-09 Score=106.04 Aligned_cols=59 Identities=22% Similarity=0.237 Sum_probs=52.3
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhC---------------------CChHhHhhhhhhhHhh
Q 005863 407 HAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTG---------------------LSKNQVANWFINARVR 465 (673)
Q Consensus 407 ~~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTG---------------------LS~~QVsNWF~NaR~R 465 (673)
..+|.|..|++.++.+|+.+|.. +|||+..+|..||..++ |+..||.+||+|+|++
T Consensus 114 k~rr~R~~ft~~ql~~Le~~F~~---~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 114 KGRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHH---HCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred cCCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 34566777999999999999999 89999999999999999 9999999999999999
Q ss_pred ccc
Q 005863 466 LWK 468 (673)
Q Consensus 466 lkK 468 (673)
.+.
T Consensus 191 ~k~ 193 (194)
T 1ic8_A 191 EAF 193 (194)
T ss_dssp CC-
T ss_pred hhc
Confidence 764
No 75
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.85 E-value=1.9e-09 Score=111.95 Aligned_cols=53 Identities=28% Similarity=0.381 Sum_probs=49.6
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhcc
Q 005863 412 QRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLW 467 (673)
Q Consensus 412 rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~Rlk 467 (673)
++.|.+.++..|+++|.. ||||+..+|.+||++|||+..||++||+|||+|.|
T Consensus 369 ~~~~~~~q~~~Le~~f~~---~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 369 AAAISPQARAFLEQVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HCSSCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhcchHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 456899999999999988 89999999999999999999999999999999964
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.84 E-value=2.8e-09 Score=106.88 Aligned_cols=58 Identities=22% Similarity=0.293 Sum_probs=51.9
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhC---------------------CChHhHhhhhhhhHh
Q 005863 406 RHAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTG---------------------LSKNQVANWFINARV 464 (673)
Q Consensus 406 r~~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTG---------------------LS~~QVsNWF~NaR~ 464 (673)
+..+|.|..|++.++.+|+.||.. +|||+..+|+.||..|+ ||..||.|||+|+|+
T Consensus 140 ~k~RR~R~~ft~~ql~~Le~~F~~---~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~ 216 (221)
T 2h8r_A 140 KKMRRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 216 (221)
T ss_dssp --CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhh
Confidence 445666777999999999999998 99999999999999998 899999999999999
Q ss_pred hc
Q 005863 465 RL 466 (673)
Q Consensus 465 Rl 466 (673)
+.
T Consensus 217 ~~ 218 (221)
T 2h8r_A 217 EE 218 (221)
T ss_dssp TC
T ss_pred hh
Confidence 84
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=1.6e-08 Score=85.16 Aligned_cols=46 Identities=26% Similarity=0.493 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhh
Q 005863 417 ESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVR 465 (673)
Q Consensus 417 k~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~R 465 (673)
++++.+|++.|.. +|+|+.+|+..||..+||.+..|..||+|+|.+
T Consensus 14 k~ql~~Lk~yF~~---n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAM---NMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 6789999999999 999999999999999999999999999999975
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=95.76 E-value=0.0012 Score=49.39 Aligned_cols=20 Identities=30% Similarity=0.601 Sum_probs=17.1
Q ss_pred HhHhhhhhhhHhhccchhHH
Q 005863 453 NQVANWFINARVRLWKPMIE 472 (673)
Q Consensus 453 ~QVsNWF~NaR~RlkKp~i~ 472 (673)
.||..||+|+|.|.||...+
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 48999999999998887554
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.24 E-value=0.058 Score=45.48 Aligned_cols=45 Identities=22% Similarity=0.396 Sum_probs=40.1
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhh
Q 005863 415 LPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINA 462 (673)
Q Consensus 415 Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~Na 462 (673)
.++...++|+.+|.+ |-...+++-..|+.+++|+..||..||.-+
T Consensus 13 ~~p~~~e~L~~Yy~~---hk~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 13 PPPPDIQPLERYWAA---HQQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp CCCCCCHHHHHHHHH---TCCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHH---hcccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 456668999999999 678999999999999999999999999753
No 80
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=71.43 E-value=8.5 Score=33.68 Aligned_cols=50 Identities=18% Similarity=0.125 Sum_probs=39.4
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhh
Q 005863 410 RPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVR 465 (673)
Q Consensus 410 R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~R 465 (673)
++++.|+.+.+..+-.++.+ ++.++ ...+|+..|++...|.+|..+++..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~---~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEE---NPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHH---CTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred CcceeCCHHHHHHHHHHHHH---CCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 35678999998888777766 57665 3368999999999999998776654
No 81
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=61.99 E-value=7.8 Score=32.33 Aligned_cols=49 Identities=12% Similarity=0.220 Sum_probs=40.3
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccchh
Q 005863 414 GLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPM 470 (673)
Q Consensus 414 ~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp~ 470 (673)
.||+..+.+|...|.+. | + -..+|+.+|++...|.++...+|+++++.+
T Consensus 37 ~L~~~~r~vl~l~~~~g----~-s---~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG----W-S---TAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp TSCHHHHHHHHHHHTSC----C-C---HHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC----C-C---HHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 58999999998866553 2 1 467899999999999999999999987653
No 82
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=55.69 E-value=14 Score=28.78 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=42.9
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccchhHHHH
Q 005863 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPMIEEM 474 (673)
Q Consensus 408 ~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp~i~e~ 474 (673)
.++....|++..+.+|..+ .+ .+ + -.++|...|++...|..++...+.++......++
T Consensus 5 ~~~~~~~L~~~e~~il~~~-~~----g~-s---~~eIA~~l~is~~tV~~~~~~~~~kl~~~~~~~~ 62 (74)
T 1fse_A 5 EFQSKPLLTKREREVFELL-VQ----DK-T---TKEIASELFISEKTVRNHISNAMQKLGVKGRSQA 62 (74)
T ss_dssp ---CCCCCCHHHHHHHHHH-TT----TC-C---HHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHH
T ss_pred cCCCCCCCCHHHHHHHHHH-Hc----CC-C---HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHH
Confidence 3445667999999999875 33 33 2 4569999999999999999999999876654443
No 83
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=53.48 E-value=12 Score=28.80 Aligned_cols=50 Identities=14% Similarity=-0.005 Sum_probs=39.5
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccchh
Q 005863 413 RGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPM 470 (673)
Q Consensus 413 R~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp~ 470 (673)
..||+..+.+|...|.+. ++ -..+|...|++...|.+|...+|.++++.+
T Consensus 14 ~~L~~~~r~il~l~~~~g----~s----~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 14 ADLTTDQREALLLTQLLG----LS----YADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp TSSCHHHHHHHHHHHTSC----CC----HHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred HhCCHHHHHHHHHHHHcC----CC----HHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 468999999998876552 22 356899999999999999999999987643
No 84
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=52.39 E-value=12 Score=29.86 Aligned_cols=55 Identities=11% Similarity=-0.061 Sum_probs=40.6
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhcc-chhH
Q 005863 413 RGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLW-KPMI 471 (673)
Q Consensus 413 R~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~Rlk-Kp~i 471 (673)
..||+..+.+|...|.-.-..++ + -.++|...|++...|.+|...++.+++ +...
T Consensus 9 ~~L~~~er~il~l~~~l~~~~~~-s---~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~~ 64 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGREH-T---LEEVGAYFGVTRERIRQIENKALRKLKYHESR 64 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCC-C---HHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC-
T ss_pred HhCCHHHHHHHHHHHhcccCCCC-C---HHHHHHHHCCCHHHHHHHHHHHHHHHHhhHhh
Confidence 45899999999887751000122 2 357899999999999999999999988 5543
No 85
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=51.90 E-value=9 Score=31.83 Aligned_cols=56 Identities=13% Similarity=0.069 Sum_probs=41.9
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccchhHHH
Q 005863 414 GLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPMIEE 473 (673)
Q Consensus 414 ~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp~i~e 473 (673)
.||+..+.+|...|.-.-..++ + -..+|...|++...|.+|...+++++++.+...
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~-s---~~EIA~~lgis~~tV~~~~~ra~~kLr~~l~~~ 73 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPK-T---LEEVGQYFNVTRERIRQIEVKALRKLRHPSRSK 73 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC-C---HHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSSH
T ss_pred hCCHHHHHHHHHHHccCCCCCC-C---HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 5899999999887751000122 2 456899999999999999999999998765443
No 86
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=51.22 E-value=17 Score=31.85 Aligned_cols=47 Identities=13% Similarity=0.100 Sum_probs=38.0
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 414 GLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 414 ~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
.||+..+.+|. .+.+ .|+ -..+|+.+|++...|.++...+|+++++.
T Consensus 109 ~L~~~~r~v~~-~~~~----g~s----~~EIA~~lgis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR----GYS----YREIATILSKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp HSCHHHHHHHH-HHTT----TCC----HHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc----CCC----HHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 58889999998 4443 332 46699999999999999999999998764
No 87
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=50.05 E-value=44 Score=27.70 Aligned_cols=46 Identities=20% Similarity=0.318 Sum_probs=32.0
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhh
Q 005863 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFIN 461 (673)
Q Consensus 408 ~~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~N 461 (673)
.+++++.++.+.+.....++... . + ...+|+++|++...|.+|...
T Consensus 16 ~~~~~~~ys~e~k~~~v~~~~~g----~-s---~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 16 GKRPLRSLTPRDKIHAIQRIHDG----E-S---KASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp CSSCCSSCCHHHHHHHHHHHHHT----C-C---HHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHCC----C-C---HHHHHHHHCcCHHHHHHHHHH
Confidence 33456779888865554454331 2 2 567899999999999999743
No 88
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=48.46 E-value=23 Score=24.64 Aligned_cols=42 Identities=7% Similarity=0.121 Sum_probs=28.8
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhh
Q 005863 413 RGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINA 462 (673)
Q Consensus 413 R~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~Na 462 (673)
+.|+++.+..+...+.+ .+ + ...+|+.+|++...|..|....
T Consensus 4 ~~l~~~~~~~i~~~~~~----g~-s---~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLL----NV-S---LHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp CCCCHHHHHHHHHHHHT----TC-C---HHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHHc----CC-C---HHHHHHHHCcCHHHHHHHHhhH
Confidence 35777766444444433 22 2 5679999999999999998543
No 89
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=48.41 E-value=19 Score=27.68 Aligned_cols=47 Identities=9% Similarity=0.091 Sum_probs=31.9
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhh
Q 005863 412 QRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINA 462 (673)
Q Consensus 412 rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~Na 462 (673)
+++++.+.+......+.. .++.......+|++.|++..+|.+|....
T Consensus 3 r~~ys~efK~~~~~~~~~----g~s~~~~~~~vA~~~gIs~~tl~~W~~~~ 49 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN----DNDCKGNQRATARKYNIHRRQIQKWLQCE 49 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH----CTTTTTCHHHHHHHTTSCHHHHHHHHTTH
T ss_pred CCcCCHHHHHHHHHHHHc----CCCcchHHHHHHHHHCcCHHHHHHHHHHH
Confidence 567888887666555433 22211225689999999999999996543
No 90
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=47.31 E-value=9.1 Score=30.09 Aligned_cols=54 Identities=19% Similarity=0.210 Sum_probs=40.0
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccchhH
Q 005863 414 GLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPMI 471 (673)
Q Consensus 414 ~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp~i 471 (673)
.||+..+.+|...|.-.-...+ + -.++|...|++...|.++...+++++++...
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~-s---~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~ 58 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDY-T---LEEVGKQFDVTRERIRQIEAKALRKLRHPSR 58 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCC-C---HHHHHHHHTCCHHHHHHHHHHHHHGGGSCCG
T ss_pred cCCHHHHHHHHHHHccCCCCCC-C---HHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999877611000122 2 3568999999999999999999999887543
No 91
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=45.69 E-value=19 Score=29.58 Aligned_cols=55 Identities=13% Similarity=0.070 Sum_probs=43.1
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccchhHHHHHH
Q 005863 413 RGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPMIEEMYK 476 (673)
Q Consensus 413 R~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp~i~e~~~ 476 (673)
..|++..+.+|..+ .+ .+ .-.++|+..|++...|.++..+.+++++.....++..
T Consensus 20 ~~Lt~~e~~vl~l~-~~----g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l~~ 74 (82)
T 1je8_A 20 NQLTPRERDILKLI-AQ----GL----PNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAV 74 (82)
T ss_dssp GGSCHHHHHHHHHH-TT----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred ccCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 35899999999874 33 23 2467999999999999999999999998776655443
No 92
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=43.32 E-value=40 Score=29.30 Aligned_cols=62 Identities=18% Similarity=0.205 Sum_probs=46.0
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccchhHHHHHHHhh
Q 005863 414 GLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPMIEEMYKEEF 479 (673)
Q Consensus 414 ~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp~i~e~~~~~~ 479 (673)
.||+..+.++.-.|...-..++ .-..+|..+|++...|.++...+++++++....+..+.-.
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~~----s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~~~~l~~~~ 80 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTDY----TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSGS 80 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999887752101122 2456899999999999999999999998877655554433
No 93
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=43.04 E-value=17 Score=28.80 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=41.3
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccchhHHHHHH
Q 005863 414 GLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPMIEEMYK 476 (673)
Q Consensus 414 ~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp~i~e~~~ 476 (673)
.|++..+.+|.-+ .+ .+. -..+|...|++...|.++....+.+++.....++..
T Consensus 16 ~L~~~e~~vl~l~-~~----g~s----~~eIA~~l~is~~tV~~~~~r~~~kl~~~~~~~l~~ 69 (79)
T 1x3u_A 16 TLSERERQVLSAV-VA----GLP----NKSIAYDLDISPRTVEVHRANVMAKMKAKSLPHLVR 69 (79)
T ss_dssp HHCHHHHHHHHHH-TT----TCC----HHHHHHHTTSCHHHHHHHHHHHHHHTTCCSHHHHHH
T ss_pred hCCHHHHHHHHHH-Hc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 3678888888774 33 232 357999999999999999999999998766655433
No 94
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=40.57 E-value=38 Score=29.28 Aligned_cols=54 Identities=17% Similarity=0.107 Sum_probs=41.9
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccchhHHH
Q 005863 411 PQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPMIEE 473 (673)
Q Consensus 411 ~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp~i~e 473 (673)
+...|++..+.+|.-++ +- + + -.++|...|++...|.++..+.++++.-....+
T Consensus 31 ~~~~Lt~re~~Vl~l~~-~G----~-s---~~EIA~~L~iS~~TV~~~l~ri~~KLgv~~r~e 84 (99)
T 1p4w_A 31 GDKRLSPKESEVLRLFA-EG----F-L---VTEIAKKLNRSIKTISSQKKSAMMKLGVDNDIA 84 (99)
T ss_dssp SSSSCCHHHHHHHHHHH-HT----C-C---HHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHH
T ss_pred ccCCCCHHHHHHHHHHH-cC----C-C---HHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHH
Confidence 35679999999997654 42 2 1 367999999999999999999999986544434
No 95
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=40.14 E-value=47 Score=33.71 Aligned_cols=70 Identities=20% Similarity=0.232 Sum_probs=43.3
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHH-HhCCChHhHhhhhhhhHhhccchhHHHHHHHhhCCccccc
Q 005863 410 RPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAK-QTGLSKNQVANWFINARVRLWKPMIEEMYKEEFGDTEENS 486 (673)
Q Consensus 410 R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~-qTGLS~~QVsNWF~NaR~RlkKp~i~e~~~~~~~~~~~~~ 486 (673)
+....++++-..++..-|.. |-..-.+ +|+ ..+-|..||.+.|.|.|+|+.-..|-+.|..+.+..+.+.
T Consensus 131 k~s~~WTeEE~~lFleAl~k-----YGKDW~~--IAk~VgTKT~~QcKnfY~~~kKRlnLD~ilke~eae~g~~~~~~ 201 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRK-----YGRDFQA--ISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWEAEHGKEETNG 201 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHH-----HSSCHHH--HHHHHSSCCHHHHHHHHHHTTTTTTHHHHHHHHHTC--------
T ss_pred ccCCCCCHHHHHHHHHHHHH-----HCcCHHH--HHHHcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCCCC
Confidence 34456888888888777777 3333222 333 3458889999999999999876666666665555444443
No 96
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=39.25 E-value=45 Score=27.82 Aligned_cols=42 Identities=12% Similarity=0.170 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhh
Q 005863 418 SSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINA 462 (673)
Q Consensus 418 ~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~Na 462 (673)
+.+..+..|+.+|+..|-++ -..||+..|+++..+...|.-.
T Consensus 2 ~~~~~i~~~i~~~~~~~~~~---~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 2 NAKELIQNIIEESYTDSQFT---LSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHHHHTTCTTCC---HHHHHHHTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCCCCC---HHHHHHHHCcCHHHHHHHHHHH
Confidence 35677889999998876566 4558999999999999888765
No 97
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=38.42 E-value=82 Score=29.19 Aligned_cols=70 Identities=19% Similarity=0.291 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhhcCccchhhhHHHHHHHHHHhhhhHHHHHH
Q 005863 290 HAERQELLNKKTKLLSMLEEVDRGYKQY---YHQMQIVASSFDMVAGHGAAKSYTVLALQTISRHFRSLRDAISD 361 (673)
Q Consensus 290 ~~e~~e~q~kk~kLl~ml~Evd~ry~qy---~~qmq~vvssfe~vaG~~aa~pyt~lal~~is~~fr~Lrd~i~~ 361 (673)
-.|=+.|+.+-.+...-|.+.+.++++- ++++..++.++....+ ...|||.+-...|++..+.|+..|..
T Consensus 44 leEI~~L~~~He~F~~~L~~a~~e~~~i~~i~~el~~~~~~~~~~~~--~~npYT~it~~~l~~~W~~l~~li~~ 116 (129)
T 1wlx_A 44 IEEIEGLISAHDQFKSTLPDADREREAILAIHKEAQRIAESNHIKLS--GSNPYTTVTPQIINSKWEKVQQLVPK 116 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCS--SSCSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCC--CCCCCccchHHHHHHHHHHHHHHHHH
Confidence 3577889999999999999999999987 5668888887774322 24599988888888888888877754
No 98
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=36.28 E-value=56 Score=28.82 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=40.2
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccchh
Q 005863 414 GLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPM 470 (673)
Q Consensus 414 ~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp~ 470 (673)
.||+..+.++...+.+. ++ -..+|..+|++...|.+|...+|.++++.+
T Consensus 22 ~L~~~~r~vl~l~y~~g----~s----~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD----YS----LAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHTC----CC----HHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC----CC----HHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 58999999998876652 22 367999999999999999999999986643
No 99
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=35.50 E-value=31 Score=32.12 Aligned_cols=49 Identities=24% Similarity=0.262 Sum_probs=40.5
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 413 RGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 413 R~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
..||+..+.+|...|.+ .++ -.++|+.+|++...|..+...+|.++++.
T Consensus 186 ~~L~~~~r~vl~l~~~~----g~s----~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 186 SKLPEREKLVIQLIFYE----ELP----AKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp TTSCHHHHHHHHHHHTS----CCC----HHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHhc----CCC----HHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 36899999999887755 332 45699999999999999999999998764
No 100
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=35.44 E-value=37 Score=30.81 Aligned_cols=48 Identities=15% Similarity=0.075 Sum_probs=38.9
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 414 GLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 414 ~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
.||+..+.+|.-.+.+. ++ -.++|..+|++...|.++...+|+++++.
T Consensus 140 ~L~~~~r~vl~l~~~~g----~s----~~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 140 SLPEDLRMAITLRELDG----LS----YEEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp HSCHHHHHHHHHHHTTC----CC----HHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHhHHHHHcC----CC----HHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 47888899988766552 32 35699999999999999999999998764
No 101
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=34.85 E-value=35 Score=30.01 Aligned_cols=49 Identities=14% Similarity=0.080 Sum_probs=40.1
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccchh
Q 005863 414 GLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPM 470 (673)
Q Consensus 414 ~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp~ 470 (673)
.||+..+.++...+.+. ++ -..+|..+|++...|.++...+|.++++.+
T Consensus 25 ~L~~~~r~vl~l~~~~g----~s----~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED----YS----LSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp GSCHHHHHHHHHHHTSC----CC----HHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC----CC----HHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 58999999998876552 22 367899999999999999999999987654
No 102
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=34.34 E-value=24 Score=29.31 Aligned_cols=53 Identities=19% Similarity=0.125 Sum_probs=41.2
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccchhHHHH
Q 005863 413 RGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPMIEEM 474 (673)
Q Consensus 413 R~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp~i~e~ 474 (673)
..|++..+.+|.-+ .+ .+.. .++|+..|++...|.++..++|++++.....++
T Consensus 28 ~~Lt~~e~~vl~l~-~~----g~s~----~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l 80 (91)
T 2rnj_A 28 EMLTEREMEILLLI-AK----GYSN----QEIASASHITIKTVKTHVSNILSKLEVQDRTQA 80 (91)
T ss_dssp GGCCSHHHHHHHHH-HT----TCCT----THHHHHHTCCHHHHHHHHHHHHHHTTCCSSHHH
T ss_pred hcCCHHHHHHHHHH-Hc----CCCH----HHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHH
Confidence 45899999999874 33 2332 468999999999999999999999977655443
No 103
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=33.51 E-value=34 Score=31.10 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=37.3
Q ss_pred CCCCCCCChhHHHHHHHHH-HHhcCCCCCCHHHHHHHHH----Hh--CCChHhHhhhhhhh
Q 005863 409 WRPQRGLPESSVSILRAWL-FEHFLHPYPNDSEKIMLAK----QT--GLSKNQVANWFINA 462 (673)
Q Consensus 409 ~R~rR~Lpk~a~~iLr~Wf-~eH~~nPYPS~~EK~~LA~----qT--GLS~~QVsNWF~Na 462 (673)
.++|+.|+-+++..+..|+ .+ ||-.+ +..||+ +. +++...|+.|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~---~~~~~---q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQL---QNRSG---QQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSS---SSCCC---HHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHh---CCCCC---HHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 3567789999999999998 45 67666 445666 77 78999999998764
No 104
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=33.33 E-value=35 Score=28.77 Aligned_cols=48 Identities=19% Similarity=0.207 Sum_probs=38.9
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 413 RGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 413 R~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
..|++..+.+|.-. .+ .+. -.++|+..|++...|.++..+.|++++..
T Consensus 26 ~~Lt~~e~~vl~l~-~~----g~s----~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 26 SGLTDQERTLLGLL-SE----GLT----NKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp -CCCHHHHHHHHHH-HT----TCC----HHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred hcCCHHHHHHHHHH-Hc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 46999999999986 33 232 36799999999999999999999998764
No 105
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=28.37 E-value=2.8e+02 Score=23.78 Aligned_cols=69 Identities=12% Similarity=0.186 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCccchhhh-HHHHHHHHHHhhhhHHHHHHHHHHhh
Q 005863 297 LNKKTKLLSMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSYT-VLALQTISRHFRSLRDAISDQIQVTG 367 (673)
Q Consensus 297 q~kk~kLl~ml~Evd~ry~qy~~qmq~vvssfe~vaG~~aa~pyt-~lal~~is~~fr~Lrd~i~~qi~~~~ 367 (673)
-..+.+++.++.|+|.+|.....++...+..|-.-.|. ..|-. .-.++.|...|..+...-.+.|..+.
T Consensus 17 P~El~r~~~~irelD~~~~~~~~~i~~~~~~~~~~~~~--~~~~~r~~~l~~I~~~~~~~~~l~dEKv~lA~ 86 (104)
T 4afl_A 17 PFELQRNFQLMRDLDQRTEDLKAEIDKLATEYMSSARS--LSSEEKLALLKQIQEAYGKCKEFGDDKVQLAM 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566888889999999999999888777777643332 22322 23347777777666554444454433
No 106
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=26.04 E-value=78 Score=26.23 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=30.6
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhH
Q 005863 412 QRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINAR 463 (673)
Q Consensus 412 rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR 463 (673)
++.++.+.+...-.++... ..+ ....+|+.+|++...|.+|....+
T Consensus 3 r~~ys~e~k~~~v~~~~~~--~g~----s~~~ia~~~gIs~~tl~rW~~~~~ 48 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENS--DGA----SLQQIANDLGINRVTLKNWIIKYG 48 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTG--GGS----CHHHHHHHHTSCHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHc--CCC----hHHHHHHHHCcCHHHHHHHHHHHh
Confidence 4578887765544444321 011 256899999999999999976444
No 107
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=25.76 E-value=59 Score=26.19 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=21.3
Q ss_pred HHHHHHHhCCChHhHhhhhhhhHhh
Q 005863 441 KIMLAKQTGLSKNQVANWFINARVR 465 (673)
Q Consensus 441 K~~LA~qTGLS~~QVsNWF~NaR~R 465 (673)
...||+.+|++...|++|..+.+.+
T Consensus 34 q~elA~~~gis~~~is~~e~g~~~~ 58 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKIDL 58 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCGGG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCCC
Confidence 4679999999999999999887643
No 108
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=25.74 E-value=30 Score=31.20 Aligned_cols=48 Identities=25% Similarity=0.269 Sum_probs=39.3
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccch
Q 005863 414 GLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP 469 (673)
Q Consensus 414 ~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp 469 (673)
.||+..+.+|.-.+.+. .+| .++|..+|++...|.+|...+|+++++.
T Consensus 135 ~L~~~~r~vl~l~~~~g--~s~------~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 135 RLPEAQRALIERAFFGD--LTH------RELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp TSCHHHHHHHHHHHHSC--CSS------CCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC--CCH------HHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 48999999998876664 333 3489999999999999999999998753
No 109
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=25.48 E-value=1.2e+02 Score=25.26 Aligned_cols=47 Identities=11% Similarity=-0.031 Sum_probs=28.7
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCC-------ChHhHhhhhhh
Q 005863 412 QRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGL-------SKNQVANWFIN 461 (673)
Q Consensus 412 rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGL-------S~~QVsNWF~N 461 (673)
.+.++++....+.+++.+ +|.-+..+......+.|+ +...|..|+..
T Consensus 73 ~~~l~~~~~~~i~~~~~~---~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 73 PRIATPEIENRIEEYKRS---SPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRG 126 (128)
T ss_dssp CCSSCSTHHHHHHHTTTT---CTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC--
T ss_pred CCcCCHHHHHHHHHHHHh---CcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHHh
Confidence 345777777777777765 566665544333223374 88889888753
No 110
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=25.42 E-value=1e+02 Score=25.83 Aligned_cols=40 Identities=18% Similarity=0.299 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhh
Q 005863 419 SVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINA 462 (673)
Q Consensus 419 a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~Na 462 (673)
.+..+..|+.+|+..| ++ -..||+..|+++..+...|...
T Consensus 3 ~i~~~~~~i~~~~~~~-~~---~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 3 AVRQVEEYIEANWMRP-IT---IEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHHHHTTSC-CC---HHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCC-CC---HHHHHHHHCCCHHHHHHHHHHH
Confidence 4667788999998777 55 4568999999999998888765
No 111
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=24.21 E-value=73 Score=31.18 Aligned_cols=55 Identities=22% Similarity=0.057 Sum_probs=44.6
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccchhHHHHHH
Q 005863 413 RGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPMIEEMYK 476 (673)
Q Consensus 413 R~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp~i~e~~~ 476 (673)
..||+..+.+|.-.+ + .++ -.++|..+|++...|.+...++|++++.....++..
T Consensus 196 ~~L~~~erevl~L~~-~----G~s----~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~~~~~~~ 250 (258)
T 3clo_A 196 NILSEREKEILRCIR-K----GLS----SKEIAATLYISVNTVNRHRQNILEKLSVGNSIEACR 250 (258)
T ss_dssp TSSCHHHHHHHHHHH-T----TCC----HHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred ccCCHHHHHHHHHHH-c----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 579999999998864 4 232 456899999999999999999999998876655544
No 112
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=24.06 E-value=88 Score=21.98 Aligned_cols=41 Identities=12% Similarity=0.136 Sum_probs=27.2
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhh
Q 005863 414 GLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINA 462 (673)
Q Consensus 414 ~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~Na 462 (673)
.++.+....+...+.+ .. + ...+|+.+|++...|..|+...
T Consensus 5 ~~~~~~~~~i~~l~~~----g~-s---~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 5 AINKHEQEQISRLLEK----GH-P---RQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp SSCTTHHHHHHHHHHT----TC-C---HHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCCHHHHHHHHHHHHc----CC-C---HHHHHHHHCCCHHHHHHHHHHc
Confidence 4555554444444443 22 2 5679999999999999998643
No 113
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Probab=23.72 E-value=2.3e+02 Score=31.59 Aligned_cols=60 Identities=18% Similarity=0.267 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCccchhhhHHHHHHHH
Q 005863 289 SHAERQELLNKKTKLL-------------SMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSYTVLALQTIS 349 (673)
Q Consensus 289 s~~e~~e~q~kk~kLl-------------~ml~Evd~ry~qy~~qmq~vvssfe~vaG~~aa~pyt~lal~~is 349 (673)
|..+|..||.+++||. .+++|.+++.+-...-++..+..= .|.|.|++.-..+.+|+...
T Consensus 356 s~~~~e~l~erlakl~~~~~tI~lrG~te~~l~E~~r~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~ 428 (543)
T 1we3_A 356 SEYAREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEG-IVPGGGVTLLRAISAVEELI 428 (543)
T ss_dssp SHHHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhccC-cCCCccHHHHHHHHHHHHHh
Confidence 4568888999999984 578888888888877777666653 88999998777777776654
No 114
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=23.65 E-value=88 Score=23.37 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=30.0
Q ss_pred HHHHHHhCCChHhHhhhhhhhHhhccchhHHHHHHH
Q 005863 442 IMLAKQTGLSKNQVANWFINARVRLWKPMIEEMYKE 477 (673)
Q Consensus 442 ~~LA~qTGLS~~QVsNWF~NaR~RlkKp~i~e~~~~ 477 (673)
.++|...|++...|.++..+.+.++......++...
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~~~~~~l~~~ 52 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQVHKVTELLNC 52 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 478999999999999999999999887666555443
No 115
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=23.50 E-value=42 Score=26.66 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.8
Q ss_pred HHHHHHHhCCChHhHhhhhhhhH
Q 005863 441 KIMLAKQTGLSKNQVANWFINAR 463 (673)
Q Consensus 441 K~~LA~qTGLS~~QVsNWF~NaR 463 (673)
...||+.+|++...|++|..+.+
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 46799999999999999998866
No 116
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=23.04 E-value=56 Score=25.28 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=18.9
Q ss_pred HHHHHHHhCCChHhHhhhhhhhH
Q 005863 441 KIMLAKQTGLSKNQVANWFINAR 463 (673)
Q Consensus 441 K~~LA~qTGLS~~QVsNWF~NaR 463 (673)
...||+.+|++...|+.|..+.+
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45688889999999999988765
No 117
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=22.95 E-value=39 Score=25.14 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=20.3
Q ss_pred HHHHHHHhCCChHhHhhhhhhhH
Q 005863 441 KIMLAKQTGLSKNQVANWFINAR 463 (673)
Q Consensus 441 K~~LA~qTGLS~~QVsNWF~NaR 463 (673)
...||+.+|++...|+.|..+.+
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998764
No 118
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=22.90 E-value=1.9e+02 Score=27.34 Aligned_cols=64 Identities=19% Similarity=0.153 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhcCccchhhhHHHHHHHHHHhhhhHHH
Q 005863 293 RQELLNKKTKLLSMLEEVDRGYKQYYHQMQIVAS-SFDMVAGHGAAKSYTVLALQTISRHFRSLRDA 358 (673)
Q Consensus 293 ~~e~q~kk~kLl~ml~Evd~ry~qy~~qmq~vvs-sfe~vaG~~aa~pyt~lal~~is~~fr~Lrd~ 358 (673)
.++.+.-+.+|...++||..+-+.|.++++.++. .+|.+. .-..||+.-....+..|..-||..
T Consensus 94 ~~~~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~~~~EelR--~kl~P~~eeL~~~~~~~~eeLr~k 158 (165)
T 1gs9_A 94 SKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELR--VRLASHLRKLRKRLLRDADDLQKR 158 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4577788889999999999999999999875553 333322 123455555455555555555443
No 119
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=22.63 E-value=40 Score=25.23 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.2
Q ss_pred HHHHHHHhCCChHhHhhhhhhhH
Q 005863 441 KIMLAKQTGLSKNQVANWFINAR 463 (673)
Q Consensus 441 K~~LA~qTGLS~~QVsNWF~NaR 463 (673)
...||+.+|++...|++|..+.+
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 56799999999999999998754
No 120
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=22.08 E-value=1.1e+02 Score=25.92 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhh
Q 005863 418 SSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINA 462 (673)
Q Consensus 418 ~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~Na 462 (673)
..+..+..|+.+|+..| ++ -..||+..|++...+...|.-.
T Consensus 7 ~~i~~~~~~i~~~~~~~-~~---~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 7 PKLTEAVSLMEANIEEP-LS---TDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp HHHHHHHHHHHTCSSSC-CC---HHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCC-CC---HHHHHHHHCcCHHHHHHHHHHH
Confidence 34667788999988877 55 4568999999999988888764
No 121
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=21.81 E-value=41 Score=25.46 Aligned_cols=24 Identities=13% Similarity=0.147 Sum_probs=21.4
Q ss_pred HHHHHHHhCCChHhHhhhhhhhHh
Q 005863 441 KIMLAKQTGLSKNQVANWFINARV 464 (673)
Q Consensus 441 K~~LA~qTGLS~~QVsNWF~NaR~ 464 (673)
...||+.+|++...|+.|..+.+.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467999999999999999998765
No 122
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=21.51 E-value=2.9e+02 Score=24.22 Aligned_cols=49 Identities=10% Similarity=-0.024 Sum_probs=31.6
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHH-HHHHh----C--CChHhHhhhhhhhH
Q 005863 412 QRGLPESSVSILRAWLFEHFLHPYPNDSEKIM-LAKQT----G--LSKNQVANWFINAR 463 (673)
Q Consensus 412 rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~-LA~qT----G--LS~~QVsNWF~NaR 463 (673)
++.++.+....+.+|+.+ +|.-+..+... |..+. | ++...|..|+....
T Consensus 88 ~~~~~~~~~~~I~~~~~~---~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~~ 143 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQ---NPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTKV 143 (149)
T ss_dssp CSSSCHHHHHHHHHHHHH---CTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC-
T ss_pred CCCCCHHHHHHHHHHHHh---CcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHh
Confidence 456888888889999887 56555544322 22221 5 78889999976443
No 123
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=20.54 E-value=1.7e+02 Score=24.56 Aligned_cols=49 Identities=10% Similarity=0.163 Sum_probs=31.3
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHhCCChHhHhhhhhh
Q 005863 412 QRGLPESSVSILRAWLFEHFLHPYPND-SEKIMLAKQTGLSKNQVANWFIN 461 (673)
Q Consensus 412 rR~Lpk~a~~iLr~Wf~eH~~nPYPS~-~EK~~LA~qTGLS~~QVsNWF~N 461 (673)
++.|+.+.+...-..+.++- .-|++. .....+|++.|++..+|.+|..-
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~-~~~~s~g~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQ-GEYDSQWATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcc-cccccccccHHHHHHHHCcCHHHHHHHHHH
Confidence 45688877654444443310 012332 34678999999999999999654
No 124
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=20.11 E-value=68 Score=25.61 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=14.4
Q ss_pred HHHHHHhCCChHhHhhhhhh
Q 005863 442 IMLAKQTGLSKNQVANWFIN 461 (673)
Q Consensus 442 ~~LA~qTGLS~~QVsNWF~N 461 (673)
..||+.+|++...|+.|-.+
T Consensus 27 ~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 27 SELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHCcCHHHHHHHHcC
Confidence 45777777777777777766
No 125
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...
Probab=20.01 E-value=1.4e+02 Score=33.30 Aligned_cols=58 Identities=22% Similarity=0.237 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCccchhhhHHHHHH
Q 005863 289 SHAERQELLNKKTKLL-------------SMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSYTVLALQT 347 (673)
Q Consensus 289 s~~e~~e~q~kk~kLl-------------~ml~Evd~ry~qy~~qmq~vvssfe~vaG~~aa~pyt~lal~~ 347 (673)
|..+|..||.+++||. .+++|.+++.+-...-.+..+..= .|.|.|++.-..+.+|+.
T Consensus 357 s~~~~ekl~erlakl~~~~~tI~vrG~te~~l~E~kr~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~ 427 (547)
T 1kp8_A 357 SDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG-VVAGGGVALIRVASKLAD 427 (547)
T ss_dssp SHHHHHHHHHHHHHHHHCEEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHHHHHHTTT
T ss_pred chhhHHHHHHHHHHhcCCeEEEEEcCCcHhHHHHHHHHHHHHHHHHHHhccCC-EEeCCcHHHHHHHHHHHH
Confidence 4568889999999995 478888888888877777666653 889999877665555543
Done!