Query 005864
Match_columns 673
No_of_seqs 640 out of 5051
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 09:31:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005864.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005864hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3omv_A RAF proto-oncogene seri 100.0 1.5E-54 5.1E-59 433.4 19.2 257 401-672 35-296 (307)
2 4gt4_A Tyrosine-protein kinase 100.0 7.5E-55 2.5E-59 437.8 16.4 254 403-673 27-303 (308)
3 4asz_A BDNF/NT-3 growth factor 100.0 4.2E-55 1.4E-59 437.7 14.1 253 402-672 13-285 (299)
4 4aoj_A High affinity nerve gro 100.0 5.6E-54 1.9E-58 435.7 20.9 253 402-672 41-315 (329)
5 4b9d_A Serine/threonine-protei 100.0 3E-54 1E-58 437.0 15.6 252 402-669 24-276 (350)
6 4fih_A Serine/threonine-protei 100.0 8E-54 2.7E-58 433.2 18.0 249 402-669 74-323 (346)
7 4aw0_A HPDK1, 3-phosphoinositi 100.0 1.6E-53 5.4E-58 424.4 16.7 248 402-667 32-282 (311)
8 3hyh_A Carbon catabolite-derep 100.0 1.5E-52 5E-57 412.1 19.4 248 402-669 13-262 (275)
9 4fie_A Serine/threonine-protei 100.0 1.8E-52 6.1E-57 433.8 18.5 249 402-669 151-400 (423)
10 4g3f_A NF-kappa-beta-inducing 100.0 1.2E-52 4.1E-57 423.4 15.8 248 402-672 58-312 (336)
11 3fpq_A Serine/threonine-protei 100.0 4.7E-52 1.6E-56 412.3 18.9 248 405-669 29-282 (290)
12 3ubd_A Ribosomal protein S6 ki 100.0 1.2E-52 4E-57 418.5 12.4 249 402-669 24-281 (304)
13 4ase_A Vascular endothelial gr 100.0 3.1E-52 1.1E-56 426.1 14.8 262 395-672 57-343 (353)
14 3hmm_A TGF-beta receptor type- 100.0 1.2E-51 4E-56 416.1 18.4 262 402-672 3-293 (303)
15 4g31_A Eukaryotic translation 100.0 9.1E-51 3.1E-55 407.2 18.4 250 402-669 5-279 (299)
16 4b99_A Mitogen-activated prote 100.0 1.6E-47 5.6E-52 398.3 17.4 260 402-669 54-344 (398)
17 4f9c_A Cell division cycle 7-r 100.0 1.3E-46 4.5E-51 387.5 17.7 200 395-608 14-248 (361)
18 3uto_A Twitchin; kinase, muscl 100.0 3E-46 1E-50 408.3 21.2 251 402-669 157-410 (573)
19 3v5w_A G-protein coupled recep 100.0 2.8E-46 9.5E-51 404.3 20.2 251 402-669 189-449 (689)
20 3uim_A Brassinosteroid insensi 100.0 4.8E-45 1.6E-49 375.2 21.1 280 390-673 18-308 (326)
21 3p86_A Serine/threonine-protei 100.0 6.1E-45 2.1E-49 370.4 16.9 264 394-672 29-294 (309)
22 2qkw_B Protein kinase; three-h 100.0 2.9E-44 1E-48 368.4 20.6 271 394-672 31-311 (321)
23 3fxz_A Serine/threonine-protei 100.0 3.3E-44 1.1E-48 363.1 20.8 250 401-669 19-269 (297)
24 1o6l_A RAC-beta serine/threoni 100.0 1E-43 3.5E-48 364.7 21.8 250 402-669 5-260 (337)
25 2c30_A Serine/threonine-protei 100.0 1.2E-43 4.1E-48 363.1 21.9 261 390-669 23-294 (321)
26 3fe3_A MAP/microtubule affinit 100.0 7.7E-44 2.6E-48 364.7 20.0 249 401-669 14-264 (328)
27 2nru_A Interleukin-1 receptor- 100.0 8.2E-43 2.8E-47 355.4 25.8 276 390-673 13-303 (307)
28 3s95_A LIMK-1, LIM domain kina 100.0 5.2E-43 1.8E-47 357.3 23.6 254 402-672 10-278 (310)
29 2yab_A Death-associated protei 100.0 1.7E-43 6E-48 366.3 20.3 254 401-669 11-272 (361)
30 3rgz_A Protein brassinosteroid 100.0 5.5E-43 1.9E-47 400.3 26.3 326 2-329 353-751 (768)
31 3soa_A Calcium/calmodulin-depe 100.0 1.8E-43 6.3E-48 375.7 20.2 255 400-669 9-267 (444)
32 2psq_A Fibroblast growth facto 100.0 3.1E-43 1E-47 367.0 21.4 254 402-672 81-360 (370)
33 1tki_A Titin; serine kinase, m 100.0 1.4E-43 4.9E-48 362.2 18.3 251 401-669 4-257 (321)
34 3zgw_A Maternal embryonic leuc 100.0 9.9E-44 3.4E-48 365.7 17.0 249 401-669 9-260 (347)
35 3txo_A PKC-L, NPKC-ETA, protei 100.0 9.6E-44 3.3E-48 367.3 16.7 251 401-669 22-280 (353)
36 3h4j_B AMPK kdaid, SNF1-like p 100.0 3.9E-43 1.3E-47 359.9 19.9 248 402-669 9-258 (336)
37 3kul_A Ephrin type-A receptor 100.0 6E-43 2E-47 358.6 21.2 252 402-672 49-309 (325)
38 4dc2_A Protein kinase C IOTA t 100.0 4E-43 1.4E-47 366.6 20.0 254 401-664 51-307 (396)
39 4eqm_A Protein kinase; transfe 100.0 1.2E-43 4.1E-48 358.7 15.6 257 402-672 11-271 (294)
40 3c0i_A Peripheral plasma membr 100.0 1.4E-43 4.8E-48 367.2 16.4 257 401-669 23-286 (351)
41 4euu_A Serine/threonine-protei 100.0 1.5E-42 5E-47 355.4 22.6 264 402-671 9-304 (319)
42 2bdw_A Hypothetical protein K1 100.0 4.2E-43 1.4E-47 364.6 18.6 254 400-669 27-284 (362)
43 3a8x_A Protein kinase C IOTA t 100.0 8.6E-43 2.9E-47 359.6 20.6 253 402-664 9-264 (345)
44 3q4u_A Activin receptor type-1 100.0 6.1E-43 2.1E-47 355.3 19.3 255 401-673 7-299 (301)
45 1fot_A TPK1 delta, CAMP-depend 100.0 1.2E-42 4.1E-47 354.2 21.2 247 402-669 6-258 (318)
46 3cok_A Serine/threonine-protei 100.0 1.6E-42 5.5E-47 347.9 21.6 252 401-669 10-262 (278)
47 3niz_A Rhodanese family protei 100.0 7.4E-43 2.5E-47 355.7 19.3 262 401-669 20-300 (311)
48 3sxs_A Cytoplasmic tyrosine-pr 100.0 9.6E-43 3.3E-47 347.5 19.5 252 401-673 7-261 (268)
49 2qol_A Ephrin receptor; recept 100.0 2.4E-43 8.2E-48 368.0 15.7 252 402-672 45-305 (373)
50 2y0a_A Death-associated protei 100.0 7.7E-43 2.6E-47 357.9 18.7 253 402-669 11-271 (326)
51 1xjd_A Protein kinase C, theta 100.0 3E-43 1E-47 362.2 15.7 252 399-668 14-268 (345)
52 3cbl_A C-FES, proto-oncogene t 100.0 3.3E-43 1.1E-47 368.2 16.1 254 401-672 113-370 (377)
53 3qd2_B Eukaryotic translation 100.0 1.3E-42 4.3E-47 358.2 19.7 252 400-669 4-325 (332)
54 3soc_A Activin receptor type-2 100.0 6.9E-43 2.4E-47 358.0 17.4 263 401-672 23-314 (322)
55 2i0e_A Protein kinase C-beta I 100.0 1.2E-42 3.9E-47 359.0 19.0 251 401-669 19-276 (353)
56 1rdq_E PKA C-alpha, CAMP-depen 100.0 1.9E-42 6.5E-47 357.5 20.5 247 402-669 41-293 (350)
57 4hcu_A Tyrosine-protein kinase 100.0 6E-43 2.1E-47 349.1 16.2 250 402-672 10-262 (269)
58 4fr4_A YANK1, serine/threonine 100.0 3.2E-42 1.1E-46 358.6 21.1 252 402-669 15-271 (384)
59 3v8s_A RHO-associated protein 100.0 1.7E-43 5.7E-48 371.6 11.4 257 396-669 63-329 (410)
60 3lb7_A RAF proto-oncogene seri 100.0 3E-42 1E-46 350.3 19.8 257 401-672 35-296 (307)
61 1kob_A Twitchin; kinase, intra 100.0 2.9E-42 9.9E-47 360.3 20.0 251 402-669 51-304 (387)
62 3kn6_A Ribosomal protein S6 ki 100.0 1.1E-42 3.9E-47 356.3 16.4 250 407-669 16-270 (325)
63 2y94_A 5'-AMP-activated protei 100.0 5E-42 1.7E-46 366.8 21.7 249 402-669 16-266 (476)
64 2r5t_A Serine/threonine-protei 100.0 1E-42 3.5E-47 361.9 15.8 249 402-668 38-288 (373)
65 1ob3_A PFPK5, cell division co 100.0 2.1E-42 7.1E-47 348.8 17.2 261 402-669 2-280 (288)
66 3tki_A Serine/threonine-protei 100.0 1.6E-42 5.4E-47 355.0 16.4 251 402-669 7-261 (323)
67 3a62_A Ribosomal protein S6 ki 100.0 2.7E-42 9.4E-47 354.0 18.2 251 401-669 16-276 (327)
68 2zv2_A Calcium/calmodulin-depe 100.0 1.8E-42 6E-47 351.2 16.6 251 402-669 13-292 (298)
69 3dtc_A Mitogen-activated prote 100.0 2E-42 6.9E-47 345.8 16.4 253 402-673 7-270 (271)
70 3hko_A Calcium/calmodulin-depe 100.0 3.4E-42 1.2E-46 356.9 18.5 261 398-669 22-330 (345)
71 3ugc_A Tyrosine-protein kinase 100.0 8.6E-43 2.9E-47 353.1 13.5 259 402-672 10-287 (295)
72 4aw2_A Serine/threonine-protei 100.0 1.1E-42 3.9E-47 368.0 14.9 262 394-669 66-338 (437)
73 2x4f_A Myosin light chain kina 100.0 3.1E-42 1E-46 359.4 17.9 246 407-669 94-342 (373)
74 1luf_A Muscle-specific tyrosin 100.0 2.1E-42 7.3E-47 358.3 16.6 257 400-672 45-331 (343)
75 3tt0_A Basic fibroblast growth 100.0 5E-42 1.7E-46 360.1 19.5 255 401-672 68-348 (382)
76 4ejn_A RAC-alpha serine/threon 100.0 1.6E-42 5.4E-47 371.5 15.8 251 401-669 147-404 (446)
77 3ork_A Serine/threonine protei 100.0 4.1E-43 1.4E-47 358.0 10.7 254 402-669 12-273 (311)
78 2ivs_A Proto-oncogene tyrosine 100.0 7.1E-42 2.4E-46 349.7 19.8 255 401-672 22-307 (314)
79 3vhe_A Vascular endothelial gr 100.0 7.6E-43 2.6E-47 364.0 12.7 264 394-672 14-351 (359)
80 2qr7_A Ribosomal protein S6 ki 100.0 1.2E-42 4.1E-47 358.0 13.9 252 400-669 20-277 (342)
81 2w4o_A Calcium/calmodulin-depe 100.0 3.8E-42 1.3E-46 356.0 17.6 250 401-669 52-305 (349)
82 3gen_A Tyrosine-protein kinase 100.0 3.5E-42 1.2E-46 346.4 16.7 251 401-672 23-276 (283)
83 3gni_B Strad alpha; kinase fol 100.0 9.6E-42 3.3E-46 359.3 20.7 264 401-669 24-333 (389)
84 2rku_A Serine/threonine-protei 100.0 1E-41 3.5E-46 344.9 19.9 250 402-669 15-265 (294)
85 2eue_A Carbon catabolite derep 100.0 5.9E-42 2E-46 343.2 17.9 248 402-669 13-262 (275)
86 3l9p_A Anaplastic lymphoma kin 100.0 3.1E-42 1.1E-46 359.2 16.0 254 402-672 71-341 (367)
87 3o0g_A Cell division protein k 100.0 1.7E-41 5.7E-46 342.9 20.9 261 402-669 2-282 (292)
88 2a2a_A Death-associated protei 100.0 1E-41 3.6E-46 349.2 19.7 254 401-669 11-272 (321)
89 3fdn_A Serine/threonine-protei 100.0 1.2E-41 4E-46 341.7 19.6 249 401-669 8-257 (279)
90 2h34_A Serine/threonine-protei 100.0 3.7E-42 1.3E-46 350.5 16.1 257 401-672 33-292 (309)
91 3p1a_A MYT1 kinase, membrane-a 100.0 8.9E-42 3E-46 347.9 18.9 246 402-669 57-304 (311)
92 1k9a_A Carboxyl-terminal SRC k 100.0 1.2E-41 4.1E-46 364.5 20.6 247 401-672 192-441 (450)
93 2vd5_A DMPK protein; serine/th 100.0 1.8E-42 6E-47 364.1 13.6 261 394-669 53-327 (412)
94 3kk8_A Calcium/calmodulin depe 100.0 1.4E-41 4.6E-46 342.3 19.5 253 401-669 5-261 (284)
95 1qcf_A Haematopoetic cell kina 100.0 3.4E-42 1.1E-46 369.4 16.0 253 400-673 186-441 (454)
96 1t46_A HOMO sapiens V-KIT hard 100.0 4.3E-42 1.5E-46 351.2 16.0 258 401-673 22-304 (313)
97 3poz_A Epidermal growth factor 100.0 2.4E-42 8.1E-47 354.8 14.2 250 402-672 15-274 (327)
98 1mp8_A Focal adhesion kinase 1 100.0 7.9E-42 2.7E-46 343.3 17.3 252 401-672 14-272 (281)
99 1opk_A P150, C-ABL, proto-onco 100.0 3.5E-42 1.2E-46 372.6 15.9 252 401-673 219-475 (495)
100 3c4z_A Rhodopsin kinase; Ser/T 100.0 1.6E-41 5.4E-46 366.8 20.9 252 402-664 185-438 (543)
101 4f0f_A Serine/threonine-protei 100.0 1.1E-41 3.7E-46 343.6 18.0 254 402-673 19-286 (287)
102 2owb_A Serine/threonine-protei 100.0 1.3E-41 4.4E-46 350.6 18.9 250 402-669 41-291 (335)
103 2pmi_A Negative RE, cyclin-dep 100.0 5.3E-42 1.8E-46 350.6 15.9 263 401-669 4-293 (317)
104 2acx_A G protein-coupled recep 100.0 4.8E-42 1.6E-46 371.4 16.4 256 401-669 183-444 (576)
105 3kmu_A ILK, integrin-linked ki 100.0 6.5E-42 2.2E-46 342.1 16.1 250 402-672 10-266 (271)
106 2eva_A TAK1 kinase - TAB1 chim 100.0 4.8E-42 1.6E-46 349.2 15.4 250 402-672 8-259 (307)
107 2izr_A Casein kinase I isoform 100.0 2.3E-42 7.9E-47 355.6 13.1 254 402-672 9-277 (330)
108 1u5q_A Serine/threonine protei 100.0 6.3E-42 2.1E-46 353.8 16.1 247 402-669 54-305 (348)
109 4eut_A Serine/threonine-protei 100.0 1E-41 3.4E-46 359.4 17.8 265 402-672 9-305 (396)
110 1rjb_A FL cytokine receptor; k 100.0 8.1E-42 2.8E-46 354.0 16.9 256 400-672 43-330 (344)
111 2y7j_A Phosphorylase B kinase 100.0 2.5E-41 8.4E-46 352.2 20.4 262 393-669 85-359 (365)
112 3qup_A Tyrosine-protein kinase 100.0 1.3E-41 4.5E-46 349.1 18.1 257 400-672 21-294 (323)
113 4e5w_A Tyrosine-protein kinase 100.0 1.2E-41 4.2E-46 345.9 17.6 260 402-672 21-298 (302)
114 3f3z_A Calcium/calmodulin-depe 100.0 1.5E-41 5E-46 340.7 17.8 250 401-669 8-261 (277)
115 3dls_A PAS domain-containing s 100.0 1.9E-41 6.6E-46 348.6 18.4 246 400-670 22-275 (335)
116 3gxj_A TGF-beta receptor type- 100.0 6.2E-43 2.1E-47 355.6 7.1 255 402-673 3-294 (303)
117 4agu_A Cyclin-dependent kinase 100.0 1.8E-41 6E-46 346.2 17.8 261 402-669 3-284 (311)
118 2wqm_A Serine/threonine-protei 100.0 1E-41 3.5E-46 347.7 16.1 260 402-672 32-293 (310)
119 2vgo_A Serine/threonine-protei 100.0 3.9E-41 1.3E-45 338.8 20.0 248 402-669 14-262 (284)
120 3t9t_A Tyrosine-protein kinase 100.0 1.1E-41 3.6E-46 339.8 15.6 250 402-672 8-260 (267)
121 2pvf_A Fibroblast growth facto 100.0 2.5E-41 8.5E-46 348.5 18.8 256 401-672 34-314 (334)
122 3bhy_A Death-associated protei 100.0 2.1E-41 7.2E-46 340.7 17.6 253 402-669 5-265 (283)
123 3mdy_A Bone morphogenetic prot 100.0 7E-41 2.4E-45 346.0 21.9 262 399-672 34-327 (337)
124 1fmk_A C-SRC, P60-SRC, tyrosin 100.0 1E-41 3.5E-46 365.2 15.9 252 401-673 183-437 (452)
125 3og7_A AKAP9-BRAF fusion prote 100.0 1.4E-41 4.9E-46 342.8 16.0 258 401-673 23-285 (289)
126 3uc3_A Serine/threonine-protei 100.0 1.4E-41 4.7E-46 353.3 16.0 252 401-669 19-274 (361)
127 1nxk_A MAP kinase-activated pr 100.0 3.1E-41 1.1E-45 355.3 18.8 251 402-669 61-321 (400)
128 3kfa_A Tyrosine-protein kinase 100.0 2.8E-42 9.5E-47 348.1 10.2 254 400-672 11-267 (288)
129 1csn_A Casein kinase-1; phosph 100.0 2.5E-41 8.5E-46 342.9 17.2 255 402-672 10-279 (298)
130 3op5_A Serine/threonine-protei 100.0 9.6E-42 3.3E-46 355.8 14.3 261 401-672 34-325 (364)
131 3c1x_A Hepatocyte growth facto 100.0 2E-41 6.7E-46 353.1 16.5 251 403-672 90-351 (373)
132 1mqb_A Ephrin type-A receptor 100.0 4.9E-41 1.7E-45 345.7 19.2 252 402-672 44-305 (333)
133 3byv_A Rhoptry kinase; malaria 100.0 7.4E-42 2.5E-46 358.3 13.1 245 401-669 72-359 (377)
134 2i1m_A Macrophage colony-stimu 100.0 3.7E-42 1.2E-46 354.8 10.6 257 399-672 43-322 (333)
135 2zmd_A Dual specificity protei 100.0 3.9E-41 1.3E-45 353.5 18.5 248 402-669 56-320 (390)
136 3dbq_A Dual specificity protei 100.0 2.1E-41 7.2E-46 350.2 15.9 249 401-669 8-273 (343)
137 3mtl_A Cell division protein k 100.0 6E-42 2E-46 351.3 11.7 260 402-669 2-281 (324)
138 3nyv_A Calmodulin-domain prote 100.0 1.4E-41 4.9E-46 368.5 15.2 253 401-669 25-281 (484)
139 1u59_A Tyrosine-protein kinase 100.0 1.1E-40 3.6E-45 336.2 20.3 251 402-672 9-268 (287)
140 2h6d_A 5'-AMP-activated protei 100.0 6.5E-41 2.2E-45 335.8 18.7 249 402-669 11-261 (276)
141 3lxp_A Non-receptor tyrosine-p 100.0 7.5E-41 2.6E-45 342.3 19.5 258 404-672 33-306 (318)
142 1p4o_A Insulin-like growth fac 100.0 1.5E-41 5.1E-46 348.6 14.3 262 396-673 19-296 (322)
143 4fvq_A Tyrosine-protein kinase 100.0 1.7E-41 5.7E-46 342.6 14.3 247 402-673 8-272 (289)
144 3kex_A Receptor tyrosine-prote 100.0 1.6E-41 5.5E-46 348.4 14.2 252 402-672 13-272 (325)
145 2ac3_A MAP kinase-interacting 100.0 4.4E-41 1.5E-45 344.1 17.2 259 402-669 12-295 (316)
146 3pfq_A PKC-B, PKC-beta, protei 100.0 7.9E-41 2.7E-45 373.8 20.8 251 400-668 339-596 (674)
147 3lxl_A Tyrosine-protein kinase 100.0 5.8E-41 2E-45 344.8 17.9 261 402-672 23-299 (327)
148 3i6u_A CDS1, serine/threonine- 100.0 3.2E-41 1.1E-45 357.7 16.4 255 400-669 133-399 (419)
149 3llt_A Serine/threonine kinase 100.0 9.5E-41 3.2E-45 348.1 19.7 260 398-669 31-355 (360)
150 3mwu_A Calmodulin-domain prote 100.0 5.7E-41 2E-45 363.5 18.6 252 401-669 21-276 (486)
151 1qpc_A LCK kinase; alpha beta 100.0 4.6E-41 1.6E-45 337.5 16.5 251 401-672 12-265 (279)
152 2jam_A Calcium/calmodulin-depe 100.0 4.4E-41 1.5E-45 342.0 16.5 250 401-669 8-261 (304)
153 3lm5_A Serine/threonine-protei 100.0 3.2E-41 1.1E-45 346.4 15.4 266 390-669 16-287 (327)
154 3f66_A Hepatocyte growth facto 100.0 9.4E-41 3.2E-45 338.6 18.7 253 402-672 25-287 (298)
155 1b6c_B TGF-B superfamily recep 100.0 1.4E-40 4.9E-45 344.3 20.4 258 398-672 38-332 (342)
156 3g2f_A Bone morphogenetic prot 100.0 7.4E-41 2.5E-45 345.6 17.9 261 401-672 12-314 (336)
157 3lzb_A Epidermal growth factor 100.0 6.1E-41 2.1E-45 344.0 17.1 250 402-672 15-274 (327)
158 3pls_A Macrophage-stimulating 100.0 1.7E-40 5.7E-45 336.8 20.1 251 403-672 22-283 (298)
159 2yex_A Serine/threonine-protei 100.0 1.4E-40 4.6E-45 333.5 19.1 252 401-669 6-261 (276)
160 3ttj_A Mitogen-activated prote 100.0 1.5E-40 5E-45 356.4 20.6 258 401-669 61-355 (464)
161 3lij_A Calcium/calmodulin depe 100.0 8E-41 2.7E-45 362.9 18.7 252 401-669 36-291 (494)
162 3q5i_A Protein kinase; CDPK, m 100.0 8.7E-41 3E-45 363.6 18.8 253 401-669 35-301 (504)
163 2w5a_A Serine/threonine-protei 100.0 1.7E-41 5.7E-46 340.7 12.2 255 401-671 5-269 (279)
164 3cc6_A Protein tyrosine kinase 100.0 9.7E-41 3.3E-45 335.4 17.6 252 401-672 11-269 (281)
165 2xir_A Vascular endothelial gr 100.0 4.3E-41 1.5E-45 344.3 15.3 264 394-672 19-306 (316)
166 3is5_A Calcium-dependent prote 100.0 3.4E-41 1.2E-45 339.3 14.3 252 402-669 22-278 (285)
167 1ua2_A CAK, cell division prot 100.0 3.6E-41 1.2E-45 348.8 14.7 264 400-669 8-291 (346)
168 2clq_A Mitogen-activated prote 100.0 1E-40 3.6E-45 337.8 17.8 252 403-669 23-278 (295)
169 3e7e_A HBUB1, BUB1A, mitotic c 100.0 2.1E-40 7.1E-45 346.0 20.4 247 401-672 64-335 (365)
170 1xbb_A Tyrosine-protein kinase 100.0 1.9E-40 6.5E-45 335.1 19.3 252 401-672 15-275 (291)
171 3brb_A Proto-oncogene tyrosine 100.0 1.1E-40 3.8E-45 340.6 17.7 258 399-672 31-304 (313)
172 3a7i_A MST3 kinase, serine/thr 100.0 1.8E-40 6.2E-45 337.3 19.2 248 402-669 22-270 (303)
173 3g33_A Cell division protein k 100.0 4.6E-41 1.6E-45 342.5 14.7 264 400-669 7-296 (308)
174 1u46_A ACK-1, activated CDC42 100.0 4.2E-41 1.4E-45 340.0 14.2 253 402-672 18-280 (291)
175 3q60_A ROP5B; pseudokinase, tr 100.0 8.3E-41 2.8E-45 349.6 16.7 256 402-669 62-352 (371)
176 4hgt_A Casein kinase I isoform 100.0 1.5E-40 5.3E-45 336.7 17.9 257 400-672 7-276 (296)
177 3oz6_A Mitogen-activated prote 100.0 6.9E-41 2.4E-45 352.5 15.8 260 400-669 7-328 (388)
178 3com_A Serine/threonine-protei 100.0 1.4E-40 4.8E-45 340.0 17.2 251 400-669 27-278 (314)
179 1phk_A Phosphorylase kinase; g 100.0 2.5E-40 8.6E-45 335.5 18.9 254 401-669 16-283 (298)
180 2v62_A Serine/threonine-protei 100.0 8.5E-41 2.9E-45 345.9 15.7 261 402-673 37-325 (345)
181 1x8b_A WEE1HU, WEE1-like prote 100.0 2.1E-40 7.2E-45 334.4 18.1 248 400-669 9-279 (289)
182 3uzp_A CKI-delta, CKID, casein 100.0 2.1E-40 7.1E-45 335.8 17.9 256 401-672 8-276 (296)
183 3gbz_A Kinase, CMGC CDK; ssgci 100.0 3.2E-41 1.1E-45 346.7 12.0 262 400-669 32-318 (329)
184 2wtk_C Serine/threonine-protei 100.0 1.1E-39 3.6E-44 332.1 22.8 252 401-669 4-263 (305)
185 1fvr_A Tyrosine-protein kinase 100.0 2.7E-40 9.1E-45 339.8 18.3 253 402-672 25-296 (327)
186 2h8h_A Proto-oncogene tyrosine 100.0 4.8E-41 1.6E-45 367.1 13.4 252 401-673 266-520 (535)
187 2yfx_A Tyrosine-protein kinase 100.0 1.7E-40 5.8E-45 341.3 16.7 255 401-672 29-300 (327)
188 2pml_X PFPK7, Ser/Thr protein 100.0 1.2E-40 4.1E-45 345.8 15.6 254 402-669 31-322 (348)
189 4aaa_A Cyclin-dependent kinase 100.0 5E-41 1.7E-45 345.8 12.5 261 402-669 25-306 (331)
190 1byg_A CSK, protein (C-termina 100.0 1.3E-40 4.4E-45 334.0 15.2 247 401-672 20-269 (278)
191 2buj_A Serine/threonine-protei 100.0 4.5E-40 1.5E-44 336.8 19.3 257 401-672 28-302 (317)
192 1cm8_A Phosphorylated MAP kina 100.0 2E-40 6.9E-45 345.3 17.0 256 402-669 25-307 (367)
193 3n9x_A Phosphotransferase; mal 100.0 5.9E-40 2E-44 349.6 20.9 200 401-608 25-253 (432)
194 2ozo_A Tyrosine-protein kinase 100.0 2.2E-40 7.5E-45 366.9 18.2 244 409-672 343-594 (613)
195 2w1i_A JAK2; chromosomal rearr 100.0 1.6E-40 5.3E-45 341.3 15.5 259 402-672 41-318 (326)
196 2a19_B Interferon-induced, dou 100.0 1.6E-40 5.3E-45 334.6 14.8 245 400-672 9-270 (284)
197 3mi9_A Cell division protein k 100.0 2E-40 7E-45 344.3 16.1 261 402-669 17-311 (351)
198 1t4h_A Serine/threonine-protei 100.0 4.9E-40 1.7E-44 331.9 18.4 249 402-669 26-282 (290)
199 2ycf_A Serine/threonine-protei 100.0 2.1E-40 7.2E-45 339.8 15.6 254 401-669 9-274 (322)
200 3rp9_A Mitogen-activated prote 100.0 3.9E-40 1.3E-44 354.6 18.4 194 402-603 53-280 (458)
201 1vzo_A Ribosomal protein S6 ki 100.0 3.4E-41 1.2E-45 349.9 9.7 255 402-670 54-322 (355)
202 2j7t_A Serine/threonine-protei 100.0 8.9E-41 3E-45 339.5 12.3 252 401-669 18-275 (302)
203 2jii_A Serine/threonine-protei 100.0 4.1E-41 1.4E-45 349.4 9.7 255 402-672 42-332 (352)
204 2x7f_A TRAF2 and NCK-interacti 100.0 2.9E-40 1E-44 339.6 15.8 254 398-669 20-286 (326)
205 2r3i_A Cell division protein k 100.0 2.2E-40 7.6E-45 336.1 14.6 262 402-669 3-283 (299)
206 2vwi_A Serine/threonine-protei 100.0 9.2E-41 3.2E-45 339.6 11.7 263 400-669 13-287 (303)
207 2xrw_A Mitogen-activated prote 100.0 9.8E-40 3.3E-44 341.2 19.7 257 402-669 25-318 (371)
208 4fl3_A Tyrosine-protein kinase 100.0 4.4E-40 1.5E-44 365.2 18.1 245 408-672 375-627 (635)
209 3eqc_A Dual specificity mitoge 100.0 2.3E-40 7.8E-45 345.2 14.6 258 401-669 32-324 (360)
210 3pg1_A Mitogen-activated prote 100.0 4E-40 1.4E-44 343.7 16.3 270 393-669 13-316 (362)
211 3ll6_A Cyclin G-associated kin 100.0 2.8E-40 9.6E-45 341.4 14.9 250 402-672 28-304 (337)
212 1zy4_A Serine/threonine-protei 100.0 7.3E-40 2.5E-44 332.9 17.4 251 400-669 4-283 (303)
213 2wei_A Calmodulin-domain prote 100.0 7.1E-40 2.4E-44 330.1 16.4 254 399-669 19-276 (287)
214 3kvw_A DYRK2, dual specificity 100.0 4.3E-39 1.5E-43 342.2 22.7 197 402-610 97-302 (429)
215 3qyz_A Mitogen-activated prote 100.0 1.1E-39 3.7E-44 340.3 17.0 259 401-669 26-313 (364)
216 3fhr_A MAP kinase-activated pr 100.0 1.9E-39 6.5E-44 334.2 17.7 252 401-669 27-287 (336)
217 2y4i_B KSR2, HKSR2, kinase sup 100.0 5.2E-40 1.8E-44 336.7 13.4 255 400-673 31-299 (319)
218 3fme_A Dual specificity mitoge 100.0 1.4E-39 4.9E-44 328.6 16.0 254 401-669 6-266 (290)
219 3nsz_A CK II alpha, casein kin 100.0 3E-39 1E-43 332.7 18.5 252 402-669 36-319 (330)
220 2id5_A Lingo-1, leucine rich r 100.0 7.7E-39 2.6E-43 346.9 22.4 296 2-297 42-337 (477)
221 2fst_X Mitogen-activated prote 100.0 1.2E-39 4.3E-44 338.9 15.4 256 402-669 29-311 (367)
222 4e7w_A Glycogen synthase kinas 100.0 7.6E-40 2.6E-44 344.4 13.7 257 402-669 40-321 (394)
223 3sv0_A Casein kinase I-like; t 100.0 2.3E-39 7.7E-44 347.0 17.4 256 401-672 6-274 (483)
224 1blx_A Cyclin-dependent kinase 100.0 2.2E-39 7.4E-44 333.1 16.5 263 400-669 9-296 (326)
225 2b9h_A MAP kinase FUS3, mitoge 100.0 5.3E-39 1.8E-43 334.1 18.9 259 401-669 10-305 (353)
226 3rgz_A Protein brassinosteroid 100.0 1.1E-38 3.8E-43 364.7 23.3 313 2-314 304-715 (768)
227 3eb0_A Putative uncharacterize 100.0 6.6E-40 2.3E-44 344.2 12.0 259 399-669 4-321 (383)
228 3cek_A Dual specificity protei 100.0 4.1E-39 1.4E-43 328.9 17.4 250 400-669 26-292 (313)
229 2j0j_A Focal adhesion kinase 1 100.0 3.4E-39 1.2E-43 359.5 17.9 253 400-672 388-647 (656)
230 4exu_A Mitogen-activated prote 100.0 3E-39 1E-43 337.6 15.9 255 402-669 42-323 (371)
231 3e3p_A Protein kinase, putativ 100.0 2.4E-39 8.2E-44 337.6 14.7 266 395-669 16-314 (360)
232 1wak_A Serine/threonine-protei 100.0 6E-39 2E-43 339.5 17.9 257 402-669 37-391 (397)
233 1z57_A Dual specificity protei 100.0 8.9E-39 3E-43 330.5 18.7 256 402-669 14-328 (339)
234 2i6l_A Mitogen-activated prote 100.0 3.5E-39 1.2E-43 330.7 15.1 257 402-669 11-305 (320)
235 3an0_A Dual specificity mitoge 100.0 2.7E-39 9.1E-44 334.4 14.3 254 401-669 50-310 (340)
236 3qa8_A MGC80376 protein; kinas 100.0 3.6E-39 1.2E-43 352.0 15.9 261 401-667 13-295 (676)
237 3aln_A Dual specificity mitoge 100.0 6.4E-39 2.2E-43 329.6 16.8 255 402-669 22-285 (327)
238 2rio_A Serine/threonine-protei 100.0 8.2E-39 2.8E-43 340.8 18.2 249 403-669 16-295 (434)
239 3rgf_A Cyclin-dependent kinase 100.0 1.2E-39 4E-44 345.0 11.5 199 402-609 20-238 (405)
240 1j1b_A Glycogen synthase kinas 100.0 2.2E-39 7.6E-44 343.7 13.6 254 402-669 54-336 (420)
241 2iwi_A Serine/threonine-protei 100.0 6.5E-39 2.2E-43 327.3 15.5 247 397-669 26-283 (312)
242 3v47_A TOLL-like receptor 5B a 100.0 4.1E-38 1.4E-42 339.3 22.5 318 2-319 40-411 (455)
243 3a99_A Proto-oncogene serine/t 100.0 3E-39 1E-43 330.6 12.7 244 400-669 41-293 (320)
244 3coi_A Mitogen-activated prote 100.0 7.5E-39 2.6E-43 332.7 15.7 255 402-669 24-305 (353)
245 3p23_A Serine/threonine-protei 100.0 1.3E-38 4.6E-43 337.9 16.9 246 402-669 24-283 (432)
246 1q8y_A SR protein kinase; tran 100.0 2.2E-38 7.6E-43 332.1 18.1 257 402-669 19-333 (373)
247 2vx3_A Dual specificity tyrosi 100.0 4.2E-38 1.4E-42 330.3 20.0 200 401-610 53-261 (382)
248 3uqc_A Probable conserved tran 100.0 3E-38 1E-42 317.0 16.3 230 402-672 31-261 (286)
249 2id5_A Lingo-1, leucine rich r 100.0 2.5E-37 8.4E-42 335.0 24.7 313 3-318 22-335 (477)
250 2dyl_A Dual specificity mitoge 100.0 3.9E-38 1.3E-42 322.6 16.6 253 401-669 24-283 (318)
251 3v47_A TOLL-like receptor 5B a 100.0 2.1E-37 7.1E-42 333.7 22.3 306 7-315 24-383 (455)
252 2eu9_A Dual specificity protei 100.0 5.3E-38 1.8E-42 326.8 16.6 256 402-669 19-333 (355)
253 3m2w_A MAP kinase-activated pr 100.0 8.2E-37 2.8E-41 309.5 19.3 230 402-669 17-256 (299)
254 2pzi_A Probable serine/threoni 100.0 4E-37 1.4E-41 346.5 18.1 236 402-671 80-323 (681)
255 3vq2_A TLR4, TOLL-like recepto 100.0 5.4E-36 1.8E-40 334.8 25.9 184 136-320 376-562 (606)
256 3dzo_A Rhoptry kinase domain; 100.0 5.9E-37 2E-41 324.3 14.8 244 402-669 78-363 (413)
257 3t6q_A CD180 antigen; protein- 100.0 5.6E-35 1.9E-39 326.6 28.6 296 1-297 42-393 (606)
258 3t6q_A CD180 antigen; protein- 100.0 3.1E-35 1E-39 328.7 25.7 299 17-317 255-561 (606)
259 4eco_A Uncharacterized protein 100.0 1.1E-35 3.8E-40 332.1 21.9 306 2-314 193-547 (636)
260 3j0a_A TOLL-like receptor 5; m 100.0 1.6E-35 5.6E-40 342.0 23.8 68 252-319 476-563 (844)
261 2vuw_A Serine/threonine-protei 100.0 4.5E-37 1.6E-41 316.9 8.1 244 402-668 20-329 (336)
262 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.7E-35 2.6E-39 321.8 24.6 159 157-318 350-512 (562)
263 4eco_A Uncharacterized protein 100.0 2.4E-35 8.4E-40 329.3 20.2 304 6-317 237-601 (636)
264 1ziw_A TOLL-like receptor 3; i 100.0 2E-34 6.8E-39 326.5 27.6 318 2-319 258-625 (680)
265 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-34 3.8E-39 317.9 23.1 118 2-125 10-128 (520)
266 2z63_A TOLL-like receptor 4, v 100.0 1.3E-34 4.5E-39 321.3 23.5 318 1-319 37-534 (570)
267 3j0a_A TOLL-like receptor 5; m 100.0 8E-34 2.7E-38 327.9 27.7 296 1-296 33-378 (844)
268 3vq2_A TLR4, TOLL-like recepto 100.0 4.2E-34 1.4E-38 319.5 24.3 171 129-300 392-565 (606)
269 3o6n_A APL1; leucine-rich repe 100.0 5.8E-34 2E-38 300.0 23.4 290 12-318 65-354 (390)
270 4ecn_A Leucine-rich repeat pro 100.0 6.9E-34 2.3E-38 322.7 24.0 276 7-289 480-785 (876)
271 4ecn_A Leucine-rich repeat pro 100.0 4.8E-34 1.6E-38 324.0 22.6 305 2-314 435-787 (876)
272 1ogq_A PGIP-2, polygalacturona 100.0 2E-34 6.8E-39 293.3 17.5 255 65-321 51-309 (313)
273 2z7x_B TOLL-like receptor 1, v 100.0 1.4E-33 4.9E-38 309.1 24.8 128 1-134 30-162 (520)
274 1xku_A Decorin; proteoglycan, 100.0 4.7E-33 1.6E-37 286.1 27.2 268 17-294 32-307 (330)
275 2z63_A TOLL-like receptor 4, v 100.0 7.2E-34 2.5E-38 315.3 22.6 206 113-320 348-560 (570)
276 2ft3_A Biglycan; proteoglycan, 100.0 3.2E-33 1.1E-37 287.6 25.2 266 17-293 34-307 (332)
277 3oja_B Anopheles plasmodium-re 100.0 1.3E-33 4.5E-38 313.6 23.4 298 3-317 62-359 (597)
278 1ogq_A PGIP-2, polygalacturona 100.0 1.6E-34 5.4E-39 294.0 14.6 253 40-295 50-307 (313)
279 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.2E-33 1.1E-37 308.8 25.4 303 2-315 41-485 (562)
280 2z81_A CD282 antigen, TOLL-lik 100.0 1.3E-33 4.3E-38 311.8 21.8 134 1-134 35-170 (549)
281 4g8a_A TOLL-like receptor 4; l 100.0 8.7E-33 3E-37 310.8 26.8 139 180-318 441-582 (635)
282 3o6n_A APL1; leucine-rich repe 100.0 4.2E-33 1.5E-37 293.4 22.3 301 1-320 78-378 (390)
283 1ziw_A TOLL-like receptor 3; i 100.0 8.4E-33 2.9E-37 313.2 26.0 291 2-292 35-365 (680)
284 3oja_B Anopheles plasmodium-re 100.0 4.2E-33 1.4E-37 309.5 22.1 302 1-321 84-385 (597)
285 2ft3_A Biglycan; proteoglycan, 100.0 2.4E-32 8.1E-37 281.0 24.3 279 2-291 43-331 (332)
286 1xku_A Decorin; proteoglycan, 100.0 5.7E-32 1.9E-36 278.0 26.1 279 3-291 42-330 (330)
287 4fmz_A Internalin; leucine ric 100.0 5.9E-32 2E-36 280.1 26.2 290 2-313 54-343 (347)
288 2z81_A CD282 antigen, TOLL-lik 100.0 1.9E-32 6.6E-37 302.3 19.9 309 2-314 15-421 (549)
289 4fmz_A Internalin; leucine ric 100.0 2.1E-31 7.1E-36 276.0 25.3 271 2-293 76-346 (347)
290 1o6v_A Internalin A; bacterial 100.0 1.9E-31 6.4E-36 287.5 25.6 264 11-294 63-345 (466)
291 1o6v_A Internalin A; bacterial 100.0 1.3E-30 4.6E-35 280.8 26.2 294 1-317 77-389 (466)
292 2z80_A TOLL-like receptor 2, v 100.0 7.1E-32 2.4E-36 280.0 14.6 282 14-298 29-319 (353)
293 4g8a_A TOLL-like receptor 4; l 100.0 1.2E-30 4.2E-35 293.3 24.1 299 1-299 61-586 (635)
294 2z80_A TOLL-like receptor 2, v 100.0 6E-31 2.1E-35 273.0 16.4 268 2-273 41-318 (353)
295 2z66_A Variable lymphocyte rec 100.0 1.3E-30 4.3E-35 265.0 18.0 250 19-296 10-264 (306)
296 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-29 3.8E-34 271.4 25.7 215 7-246 33-247 (457)
297 2z66_A Variable lymphocyte rec 100.0 1.8E-30 6.2E-35 263.8 18.6 229 89-318 29-263 (306)
298 3zyj_A Leucine-rich repeat-con 100.0 7.9E-30 2.7E-34 272.7 23.4 253 41-298 44-297 (440)
299 3zyi_A Leucine-rich repeat-con 100.0 1E-29 3.5E-34 272.8 24.0 253 41-298 55-308 (452)
300 3oja_A Leucine-rich immune mol 100.0 9.5E-33 3.2E-37 297.9 -0.1 234 41-288 35-270 (487)
301 3zyj_A Leucine-rich repeat-con 100.0 1.7E-29 5.8E-34 270.1 23.9 250 16-270 43-293 (440)
302 1ozn_A Reticulon 4 receptor; N 100.0 3.7E-30 1.3E-34 258.6 17.3 224 19-245 14-238 (285)
303 3bz5_A Internalin-J, INLJ; leu 100.0 1.2E-29 4.3E-34 271.0 22.1 285 1-314 51-350 (457)
304 3zyi_A Leucine-rich repeat-con 100.0 2E-29 6.7E-34 270.6 23.5 250 16-270 54-304 (452)
305 1ozn_A Reticulon 4 receptor; N 100.0 1.1E-29 3.9E-34 255.0 16.9 229 43-298 14-243 (285)
306 4fcg_A Uncharacterized protein 100.0 1.2E-28 4.1E-33 252.1 21.3 236 15-270 80-315 (328)
307 4azs_A Methyltransferase WBDD; 100.0 7.3E-31 2.5E-35 286.8 3.9 187 410-606 242-437 (569)
308 4fcg_A Uncharacterized protein 100.0 1.3E-28 4.3E-33 251.9 19.7 236 40-295 81-316 (328)
309 3o53_A Protein LRIM1, AGAP0063 100.0 1.5E-30 5.2E-35 265.4 5.3 267 17-297 11-280 (317)
310 1wwl_A Monocyte differentiatio 100.0 4.5E-30 1.6E-34 261.2 6.4 251 35-295 38-311 (312)
311 3o53_A Protein LRIM1, AGAP0063 100.0 9.1E-30 3.1E-34 259.6 6.6 257 4-274 22-281 (317)
312 1wwl_A Monocyte differentiatio 100.0 5.1E-30 1.7E-34 260.9 3.0 250 12-271 39-311 (312)
313 1jl5_A Outer protein YOPM; leu 100.0 9.4E-27 3.2E-31 248.5 25.2 259 2-298 101-377 (454)
314 3g06_A SSPH2 (leucine-rich rep 99.9 1.3E-26 4.5E-31 254.8 25.8 253 2-298 50-302 (622)
315 3oja_A Leucine-rich immune mol 99.9 1.8E-28 6.1E-33 264.5 10.7 239 13-265 31-271 (487)
316 1jl5_A Outer protein YOPM; leu 99.9 2.9E-27 9.9E-32 252.5 18.2 238 2-270 21-271 (454)
317 1z7x_W Ribonuclease inhibitor; 99.9 1E-29 3.5E-34 274.1 -0.8 293 2-294 38-384 (461)
318 1z7x_W Ribonuclease inhibitor; 99.9 6.7E-30 2.3E-34 275.6 -4.2 294 2-295 13-356 (461)
319 2z62_A TOLL-like receptor 4, v 99.9 2.7E-26 9.2E-31 229.3 20.8 210 89-299 29-243 (276)
320 2z62_A TOLL-like receptor 4, v 99.9 5.8E-26 2E-30 226.8 18.1 223 21-271 12-239 (276)
321 3en9_A Glycoprotease, O-sialog 99.9 4.1E-27 1.4E-31 255.9 8.7 186 405-607 339-538 (540)
322 3g06_A SSPH2 (leucine-rich rep 99.9 8.5E-25 2.9E-29 240.4 26.8 257 16-315 40-296 (622)
323 2o6q_A Variable lymphocyte rec 99.9 5.3E-25 1.8E-29 218.9 21.2 202 17-245 17-218 (270)
324 2o6q_A Variable lymphocyte rec 99.9 6.8E-25 2.3E-29 218.1 20.8 206 65-297 17-222 (270)
325 3rfs_A Internalin B, repeat mo 99.9 1.6E-25 5.5E-30 222.8 13.5 160 132-298 81-240 (272)
326 3goz_A Leucine-rich repeat-con 99.9 2.9E-26 9.9E-31 238.3 8.1 255 21-295 3-299 (362)
327 1p9a_G Platelet glycoprotein I 99.9 1.5E-24 5.2E-29 217.4 19.2 202 36-268 6-207 (290)
328 1p9a_G Platelet glycoprotein I 99.9 2.1E-24 7.3E-29 216.3 19.7 204 11-221 5-208 (290)
329 3rfs_A Internalin B, repeat mo 99.9 5E-25 1.7E-29 219.2 14.8 229 16-257 19-247 (272)
330 3goz_A Leucine-rich repeat-con 99.9 2.4E-26 8.3E-31 238.9 4.3 254 1-271 7-299 (362)
331 2ca6_A RAN GTPase-activating p 99.9 3.2E-26 1.1E-30 240.5 1.1 259 31-289 23-339 (386)
332 2xwt_C Thyrotropin receptor; s 99.9 4.5E-24 1.6E-28 208.1 15.0 199 41-266 32-236 (239)
333 2xwt_C Thyrotropin receptor; s 99.9 5.8E-24 2E-28 207.3 15.7 203 7-218 25-236 (239)
334 2ca6_A RAN GTPase-activating p 99.9 3.3E-26 1.1E-30 240.3 -0.2 250 46-296 15-319 (386)
335 2ast_B S-phase kinase-associat 99.9 3.1E-25 1.1E-29 228.4 5.9 232 64-300 70-313 (336)
336 2ast_B S-phase kinase-associat 99.9 3.3E-25 1.1E-29 228.3 4.0 254 17-278 48-315 (336)
337 4glp_A Monocyte differentiatio 99.9 6.1E-24 2.1E-28 215.8 12.4 224 65-294 65-308 (310)
338 1h6u_A Internalin H; cell adhe 99.9 2.2E-23 7.4E-28 211.1 15.0 195 36-246 37-231 (308)
339 4glp_A Monocyte differentiatio 99.9 1.5E-23 5E-28 213.0 13.7 225 16-246 64-308 (310)
340 1zar_A RIO2 kinase; serine kin 99.9 1.3E-23 4.4E-28 209.2 11.9 155 395-580 83-252 (282)
341 3m19_A Variable lymphocyte rec 99.9 1.1E-22 3.6E-27 199.9 18.0 182 113-297 15-196 (251)
342 1h6u_A Internalin H; cell adhe 99.9 4.9E-23 1.7E-27 208.5 15.7 195 60-294 37-231 (308)
343 3m19_A Variable lymphocyte rec 99.9 2.1E-22 7.2E-27 197.7 18.1 179 17-222 15-193 (251)
344 4ay9_X Follicle-stimulating ho 99.9 3.7E-22 1.3E-26 206.2 18.6 241 19-290 12-256 (350)
345 4ay9_X Follicle-stimulating ho 99.9 5.1E-22 1.7E-26 205.1 18.9 233 2-243 19-257 (350)
346 3ogk_B Coronatine-insensitive 99.9 4.5E-23 1.5E-27 229.5 0.3 286 8-295 184-528 (592)
347 2o6s_A Variable lymphocyte rec 99.8 6.5E-21 2.2E-25 181.4 14.6 131 65-195 29-159 (208)
348 2o6s_A Variable lymphocyte rec 99.8 7.4E-21 2.5E-25 181.0 14.4 178 67-254 10-187 (208)
349 3cvr_A Invasion plasmid antige 99.8 5.7E-21 2E-25 207.3 14.6 188 65-280 60-254 (571)
350 2v70_A SLIT-2, SLIT homolog 2 99.8 5.5E-21 1.9E-25 183.2 11.4 157 139-298 14-171 (220)
351 2v9t_B SLIT homolog 2 protein 99.8 7.2E-21 2.4E-25 182.4 11.9 156 139-297 14-169 (220)
352 3ogk_B Coronatine-insensitive 99.8 1.6E-22 5.5E-27 225.1 -0.2 178 12-192 160-350 (592)
353 3cvr_A Invasion plasmid antige 99.8 2.7E-20 9.3E-25 202.0 17.0 189 41-257 60-255 (571)
354 1h6t_A Internalin B; cell adhe 99.8 1.3E-20 4.6E-25 188.8 12.2 172 36-221 42-213 (291)
355 1m9s_A Internalin B; cell inva 99.8 2.5E-20 8.5E-25 204.7 14.8 190 18-223 23-212 (605)
356 1h6t_A Internalin B; cell adhe 99.8 2.1E-20 7E-25 187.5 12.3 174 11-198 41-214 (291)
357 1m9s_A Internalin B; cell inva 99.8 2.4E-20 8.3E-25 204.8 12.6 171 61-245 40-210 (605)
358 2xot_A Amphoterin-induced prot 99.8 4.7E-20 1.6E-24 191.1 13.4 179 115-296 21-205 (361)
359 3sb4_A Hypothetical leucine ri 99.8 9.1E-21 3.1E-25 194.0 5.7 271 6-287 13-328 (329)
360 2p1m_B Transport inhibitor res 99.8 1.6E-21 5.5E-26 217.1 -0.4 227 13-240 102-405 (594)
361 2v9t_B SLIT homolog 2 protein 99.8 2.2E-19 7.7E-24 172.0 14.6 151 44-197 15-165 (220)
362 3e6j_A Variable lymphocyte rec 99.8 3E-19 1E-23 172.3 15.3 156 138-297 21-176 (229)
363 2xot_A Amphoterin-induced prot 99.8 1.9E-19 6.6E-24 186.5 14.4 176 43-245 21-202 (361)
364 2p1m_B Transport inhibitor res 99.8 3.6E-21 1.2E-25 214.3 -0.2 290 2-293 115-494 (594)
365 2v70_A SLIT-2, SLIT homolog 2 99.8 4.4E-19 1.5E-23 169.9 14.4 152 44-198 15-167 (220)
366 1zth_A RIO1 serine protein kin 99.8 2.1E-19 7.1E-24 176.7 12.1 142 401-557 46-219 (258)
367 1xeu_A Internalin C; cellular 99.8 2.8E-20 9.7E-25 183.4 4.8 169 14-197 17-185 (263)
368 3e6j_A Variable lymphocyte rec 99.8 1.2E-18 4.1E-23 168.1 15.7 134 64-198 40-173 (229)
369 4fdw_A Leucine rich hypothetic 99.8 6.2E-18 2.1E-22 176.5 21.2 267 14-293 111-383 (401)
370 4fdw_A Leucine rich hypothetic 99.8 8E-18 2.7E-22 175.7 21.7 250 36-298 109-363 (401)
371 1dce_A Protein (RAB geranylger 99.8 5.6E-21 1.9E-25 208.7 -2.6 158 124-286 397-566 (567)
372 4ezg_A Putative uncharacterize 99.8 9.5E-19 3.3E-23 164.7 13.0 154 133-294 41-195 (197)
373 1dce_A Protein (RAB geranylger 99.8 1.2E-21 4.3E-26 213.8 -8.4 204 37-263 346-567 (567)
374 1xeu_A Internalin C; cellular 99.8 6.4E-19 2.2E-23 173.7 9.9 169 88-295 19-187 (263)
375 4ezg_A Putative uncharacterize 99.8 1.5E-18 5.2E-23 163.3 11.9 153 37-197 41-194 (197)
376 3sb4_A Hypothetical leucine ri 99.8 9E-19 3.1E-23 179.2 9.8 239 15-263 48-328 (329)
377 1w8a_A SLIT protein; signaling 99.8 2E-18 6.9E-23 161.5 10.8 157 163-322 11-168 (192)
378 4b8c_D Glucose-repressible alc 99.7 7.9E-19 2.7E-23 197.8 6.9 223 40-293 173-404 (727)
379 4b8c_D Glucose-repressible alc 99.7 2.5E-18 8.5E-23 193.7 6.1 223 16-269 173-404 (727)
380 2wfh_A SLIT homolog 2 protein 99.7 2.3E-17 7.8E-22 154.3 10.8 131 163-297 13-143 (193)
381 4gyi_A RIO2 kinase; protein ki 99.7 1.3E-17 4.4E-22 169.5 7.1 148 397-558 90-266 (397)
382 1w8a_A SLIT protein; signaling 99.7 6.6E-17 2.3E-21 151.2 10.5 129 140-271 12-141 (192)
383 2ell_A Acidic leucine-rich nuc 99.7 8.9E-17 3E-21 147.0 11.1 132 16-149 24-160 (168)
384 2ell_A Acidic leucine-rich nuc 99.7 1.6E-16 5.4E-21 145.3 12.3 136 159-296 23-163 (168)
385 2je0_A Acidic leucine-rich nuc 99.7 3.7E-16 1.3E-20 139.7 11.3 129 159-289 16-149 (149)
386 2je0_A Acidic leucine-rich nuc 99.7 2.2E-16 7.4E-21 141.2 9.5 128 16-145 17-149 (149)
387 2wfh_A SLIT homolog 2 protein 99.6 7.2E-16 2.5E-20 144.0 12.8 127 19-149 13-139 (193)
388 2o6r_A Variable lymphocyte rec 99.6 9.6E-16 3.3E-20 141.4 12.7 133 162-297 9-141 (177)
389 4fs7_A Uncharacterized protein 99.6 5.5E-15 1.9E-19 155.0 18.5 274 4-289 59-375 (394)
390 2o6r_A Variable lymphocyte rec 99.6 3.9E-15 1.3E-19 137.2 13.1 127 19-148 10-136 (177)
391 1a9n_A U2A', U2A'; complex (nu 99.6 1.5E-15 5E-20 139.9 10.1 135 10-149 13-153 (176)
392 1a9n_A U2A', U2A'; complex (nu 99.6 2.8E-15 9.5E-20 138.1 9.8 135 155-293 14-153 (176)
393 1ds9_A Outer arm dynein; leuci 99.6 8.6E-17 2.9E-21 151.4 -1.2 156 132-294 14-186 (198)
394 4gt6_A Cell surface protein; l 99.6 2.2E-13 7.7E-18 142.7 22.5 279 4-292 51-369 (394)
395 1ds9_A Outer arm dynein; leuci 99.5 7.5E-17 2.6E-21 151.8 -6.0 154 110-270 16-186 (198)
396 4fs7_A Uncharacterized protein 99.5 1.3E-13 4.5E-18 144.4 17.3 272 2-285 80-393 (394)
397 4gt6_A Cell surface protein; l 99.5 4.1E-13 1.4E-17 140.6 20.8 279 2-292 73-390 (394)
398 3g39_A Variable lymphocyte rec 99.5 5.4E-14 1.8E-18 128.4 10.9 109 186-297 11-119 (170)
399 2r9u_A Variable lymphocyte rec 99.5 1.3E-13 4.5E-18 126.2 11.1 108 187-297 15-122 (174)
400 3g39_A Variable lymphocyte rec 99.5 2.5E-13 8.4E-18 124.0 11.4 107 18-127 11-117 (170)
401 2r9u_A Variable lymphocyte rec 99.5 2.9E-13 9.9E-18 123.9 11.8 106 18-126 14-119 (174)
402 3un9_A NLR family member X1; l 99.4 6.6E-15 2.3E-19 152.1 -2.0 158 88-245 72-252 (372)
403 3un9_A NLR family member X1; l 99.4 6.1E-15 2.1E-19 152.3 -3.1 169 63-231 71-262 (372)
404 4h09_A Hypothetical leucine ri 99.3 8.7E-11 3E-15 122.3 20.1 268 10-289 40-342 (379)
405 3tm0_A Aminoglycoside 3'-phosp 99.3 1E-11 3.4E-16 122.3 11.5 146 398-555 10-212 (263)
406 2ifg_A High affinity nerve gro 99.3 3.6E-12 1.2E-16 131.1 8.6 102 165-269 13-116 (347)
407 2ifg_A High affinity nerve gro 99.3 1.1E-11 3.7E-16 127.6 12.1 105 19-126 11-117 (347)
408 4h09_A Hypothetical leucine ri 99.3 2.1E-10 7.3E-15 119.4 21.1 266 3-280 56-356 (379)
409 1nd4_A Aminoglycoside 3'-phosp 99.2 5.5E-11 1.9E-15 116.9 9.4 137 403-556 21-214 (264)
410 2ra8_A Uncharacterized protein 99.1 3.9E-11 1.3E-15 122.7 5.3 84 183-267 251-341 (362)
411 2ra8_A Uncharacterized protein 99.1 5.3E-11 1.8E-15 121.7 5.0 159 128-291 164-341 (362)
412 3dxp_A Putative acyl-COA dehyd 99.1 4.8E-10 1.6E-14 115.7 11.8 143 406-556 42-248 (359)
413 3sg8_A APH(2'')-ID; antibiotic 99.0 3.9E-10 1.3E-14 113.4 6.7 186 407-608 25-288 (304)
414 3r70_A Aminoglycoside phosphot 98.8 2.9E-08 9.9E-13 100.4 11.9 138 403-558 38-239 (320)
415 1io0_A Tropomodulin; LRR prote 98.7 4E-09 1.4E-13 97.2 2.1 91 35-125 31-136 (185)
416 1io0_A Tropomodulin; LRR prote 98.7 1.6E-09 5.5E-14 99.9 -0.9 118 8-125 28-164 (185)
417 4gkh_A Aminoglycoside 3'-phosp 98.5 4.8E-07 1.6E-11 89.0 12.6 136 408-556 30-223 (272)
418 3tdw_A Gentamicin resistance p 98.5 1.4E-06 4.9E-11 87.1 13.5 137 407-557 24-225 (306)
419 3e4g_A ATP synthase subunit S, 98.4 8.3E-08 2.8E-12 85.9 3.4 84 40-123 61-150 (176)
420 3rw6_A Nuclear RNA export fact 98.4 1.6E-08 5.5E-13 97.8 -1.9 78 207-286 169-257 (267)
421 3rw6_A Nuclear RNA export fact 98.4 1.1E-07 3.6E-12 92.1 3.6 80 181-262 167-257 (267)
422 3d1u_A Putative fructosamine-3 98.4 1.1E-06 3.6E-11 87.0 10.4 76 406-488 19-97 (288)
423 3e4g_A ATP synthase subunit S, 98.4 1.4E-07 4.8E-12 84.4 3.1 84 16-99 61-150 (176)
424 3ovc_A Hygromycin-B 4-O-kinase 98.3 2.5E-06 8.5E-11 87.4 11.4 145 404-557 43-244 (362)
425 3ats_A Putative uncharacterize 98.2 1.8E-06 6.1E-11 88.7 8.1 84 407-490 25-122 (357)
426 2olc_A MTR kinase, methylthior 98.0 1.6E-05 5.3E-10 82.9 10.7 78 407-486 35-120 (397)
427 3jr1_A Putative fructosamine-3 97.9 4.3E-05 1.5E-09 76.0 11.4 138 407-552 41-232 (312)
428 2q83_A YTAA protein; 2635576, 97.9 3.1E-05 1E-09 78.9 10.1 141 408-556 38-252 (346)
429 1pgv_A TMD-1, tropomodulin TMD 97.9 4.4E-06 1.5E-10 76.2 2.8 66 37-102 38-112 (197)
430 1pgv_A TMD-1, tropomodulin TMD 97.9 3.8E-06 1.3E-10 76.6 1.8 119 59-197 36-170 (197)
431 3f7w_A Putative fructosamine-3 97.8 5.4E-05 1.9E-09 74.9 9.5 79 403-488 16-97 (288)
432 2pyw_A Uncharacterized protein 97.8 0.00015 5.1E-09 76.0 12.9 76 526-603 232-312 (420)
433 3dxq_A Choline/ethanolamine ki 97.4 0.00056 1.9E-08 68.0 10.7 71 407-488 23-95 (301)
434 2ppq_A HSK, HK, homoserine kin 97.4 0.00048 1.6E-08 69.2 9.9 159 392-556 7-217 (322)
435 3csv_A Aminoglycoside phosphot 97.4 0.00067 2.3E-08 68.5 10.8 142 408-557 24-218 (333)
436 1zyl_A Hypothetical protein YI 97.3 0.0022 7.5E-08 64.5 13.6 158 392-556 11-223 (328)
437 1nw1_A Choline kinase (49.2 KD 97.2 0.00074 2.5E-08 70.6 9.4 73 407-488 78-159 (429)
438 2yle_A Protein spire homolog 1 97.2 0.0015 5E-08 59.7 9.0 103 486-606 33-135 (229)
439 3feg_A Choline/ethanolamine ki 97.1 0.0015 5.2E-08 66.7 9.8 142 407-556 55-254 (379)
440 3rfe_A Platelet glycoprotein I 97.1 0.00078 2.7E-08 57.2 6.4 59 236-296 12-71 (130)
441 3rfe_A Platelet glycoprotein I 96.8 0.0017 5.8E-08 55.1 6.1 55 44-100 12-67 (130)
442 2qg7_A Ethanolamine kinase PV0 96.8 0.0056 1.9E-07 64.2 11.2 74 407-488 113-188 (458)
443 3c5i_A Choline kinase; choline 96.7 0.0021 7E-08 65.9 7.2 74 407-488 38-121 (369)
444 3f2s_A CK, chetk-alpha, cholin 96.6 0.0068 2.3E-07 62.1 10.1 146 407-556 57-280 (401)
445 3i1a_A Spectinomycin phosphotr 96.2 0.04 1.4E-06 55.4 12.5 32 526-557 206-237 (339)
446 3mes_A Choline kinase; malaria 95.0 0.07 2.4E-06 55.1 9.2 141 407-556 75-291 (424)
447 3g15_A CK, chetk-alpha, cholin 94.3 0.13 4.4E-06 53.0 9.4 30 527-556 245-280 (401)
448 4ann_A ESSB; membrane protein, 92.0 0.44 1.5E-05 43.5 7.9 116 459-608 43-158 (215)
449 4ano_A ESSB; membrane protein, 90.3 1.3 4.6E-05 40.5 9.4 115 459-608 48-163 (219)
450 2jwa_A Receptor tyrosine-prote 86.7 0.26 8.9E-06 31.8 1.4 24 343-366 14-37 (44)
451 2lz0_A Uncharacterized protein 84.2 2 6.9E-05 33.9 5.9 46 27-73 7-52 (100)
452 2ks1_B Epidermal growth factor 84.0 0.43 1.5E-05 30.9 1.5 25 343-367 13-38 (44)
453 2l2t_A Receptor tyrosine-prote 83.6 0.46 1.6E-05 30.7 1.5 25 343-367 12-37 (44)
454 3cxl_A N-chimerin; SH2, RHO-GA 82.1 0.17 6E-06 53.0 -1.4 62 406-471 146-214 (463)
455 2lz0_A Uncharacterized protein 80.4 3.2 0.00011 32.7 5.7 46 51-97 7-52 (100)
456 2knc_A Integrin alpha-IIB; tra 52.5 6 0.0002 26.8 1.5 23 340-362 12-34 (54)
457 2l8s_A Integrin alpha-1; trans 50.5 5.3 0.00018 27.0 1.0 23 340-362 9-31 (54)
458 2k1k_A Ephrin type-A receptor 47.9 7 0.00024 24.4 1.2 10 343-352 13-22 (38)
459 2l2t_A Receptor tyrosine-prote 44.8 12 0.0004 24.2 1.9 28 343-370 16-43 (44)
460 1iij_A ERBB-2 receptor protein 42.4 5.1 0.00017 24.3 -0.1 10 343-352 10-19 (35)
461 3ls8_A Phosphatidylinositol 3- 39.8 3.5E+02 0.012 28.8 13.4 46 503-555 454-501 (614)
462 2ks1_B Epidermal growth factor 37.9 16 0.00055 23.6 1.7 28 342-369 16-43 (44)
463 2k1a_A Integrin alpha-IIB; sin 28.7 21 0.00071 22.8 1.1 23 340-362 10-32 (42)
464 3hhm_A Phosphatidylinositol-4, 24.9 2.4E+02 0.0081 32.4 9.5 60 487-555 899-961 (1091)
465 1cja_A Protein (actin-fragmin 22.6 2E+02 0.0069 27.9 7.3 137 407-556 74-237 (342)
No 1
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-54 Score=433.37 Aligned_cols=257 Identities=23% Similarity=0.372 Sum_probs=202.6
Q ss_pred hcCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
.+++.+.+.||+|+||+||+|++.+ .||||+++.... .....+.|.+|+.++++++|||||+++|++.+ +..++||
T Consensus 35 ~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~-~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVm 110 (307)
T 3omv_A 35 ASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDP-TPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVT 110 (307)
T ss_dssp TTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEE
T ss_pred HHHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCC-CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEE
Confidence 3578889999999999999998753 699999875432 33456889999999999999999999999865 5689999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
|||++|+|.++++... ..++|.++..|+.|||+||+|||++ +||||||||+|||+++++.+||+|||+|+.....
T Consensus 111 Ey~~gGsL~~~l~~~~--~~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~ 185 (307)
T 3omv_A 111 QWCEGSSLYKHLHVQE--TKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRW 185 (307)
T ss_dssp ECCSSCBHHHHHHTSC--CCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEEEEECCCSSCBC----
T ss_pred EcCCCCCHHHHHhhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CccCCccCHHHEEECCCCcEEEeeccCceecccC
Confidence 9999999999998654 4589999999999999999999999 9999999999999999999999999999876432
Q ss_pred C--CCceeccccccccccccccc---CCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCC
Q 005864 561 S--SNWTEFAGTFGYVAPELAYT---MKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLP 635 (673)
Q Consensus 561 ~--~~~~~~~~~~~y~aPE~~~~---~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (673)
. .......||+.|||||++.+ ++|+.++|||||||++|||+||+.||.......... .........+.++
T Consensus 186 ~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~---~~~~~~~~~p~~~-- 260 (307)
T 3omv_A 186 SGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQII---FMVGRGYASPDLS-- 260 (307)
T ss_dssp --------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHH---HHHHTTCCCCCST--
T ss_pred CcceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHHH---HHHhcCCCCCCcc--
Confidence 2 23345689999999999863 468999999999999999999999997433211100 0001111122211
Q ss_pred CcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 636 SRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 636 ~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
......+.++.+++.+||+.||++||||+||++.|+
T Consensus 261 -~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le 296 (307)
T 3omv_A 261 -KLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIE 296 (307)
T ss_dssp -TSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHH
T ss_pred -cccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHH
Confidence 122234456899999999999999999999998875
No 2
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=7.5e-55 Score=437.84 Aligned_cols=254 Identities=22% Similarity=0.342 Sum_probs=209.1
Q ss_pred CCCccceeccCCcEEEEEEEeC------CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCee
Q 005864 403 NFDAEQCIGIGGQASVYRGELP------SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHS 476 (673)
Q Consensus 403 ~~~~~~~ig~G~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 476 (673)
++++.+.||+|+||+||+|.+. +++.||||+++... +....++|.+|+.++++++|||||+++|+|.+++..
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~--~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~ 104 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKA--EGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPL 104 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-C--CC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred HCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECccc--ChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEE
Confidence 4566788999999999999762 57889999997543 233467899999999999999999999999999999
Q ss_pred eEEEecccCCChHHHHhcCCC-------------CccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCC
Q 005864 477 FLVYECLERGSLAEILSNDGS-------------IKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSE 543 (673)
Q Consensus 477 ~lv~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~ 543 (673)
++|||||++|+|.+++..... ...++|.++.+|+.|||+||+|||++ +||||||||+|||++++
T Consensus 105 ~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~NILl~~~ 181 (308)
T 4gt4_A 105 SMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLVYDK 181 (308)
T ss_dssp EEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGG
T ss_pred EEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCccccceEECCC
Confidence 999999999999999975431 23589999999999999999999999 99999999999999999
Q ss_pred CceEEecccceeecCCCCC--CceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCccccccccccccc
Q 005864 544 YEARVSDFGIAKFLKPGSS--NWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNM 620 (673)
Q Consensus 544 ~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~ 620 (673)
+.+||+|||+++....... ..+...||+.|||||++.++.++.++|||||||++|||+| |+.||......+
T Consensus 182 ~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~------ 255 (308)
T 4gt4_A 182 LNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQD------ 255 (308)
T ss_dssp GCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHH------
T ss_pred CCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHHH------
Confidence 9999999999987643322 2345678999999999999999999999999999999998 899997543211
Q ss_pred ccccccccCC-CCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhhC
Q 005864 621 NLSLNEILDP-RLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLCK 673 (673)
Q Consensus 621 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~~ 673 (673)
....+... ..+.+. +.+.++.+++.+||+.||++||||+||++.|+.
T Consensus 256 --~~~~i~~~~~~~~p~----~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a 303 (308)
T 4gt4_A 256 --VVEMIRNRQVLPCPD----DCPAWVYALMIECWNEFPSRRPRFKDIHSRLRA 303 (308)
T ss_dssp --HHHHHHTTCCCCCCT----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred --HHHHHHcCCCCCCcc----cchHHHHHHHHHHcCCChhHCcCHHHHHHHHHh
Confidence 11122222 223332 234568999999999999999999999999873
No 3
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=4.2e-55 Score=437.71 Aligned_cols=253 Identities=25% Similarity=0.429 Sum_probs=208.4
Q ss_pred cCCCccceeccCCcEEEEEEEeC------CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCe
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP------SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRH 475 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~ 475 (673)
++|.+.+.||+|+||+||+|++. +++.||||+++.. .....++|.+|+++|++++|||||+++|+|.+++.
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~---~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~ 89 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA---SDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDP 89 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSC---CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCC---ChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCE
Confidence 45778899999999999999763 4788999999754 23346789999999999999999999999999999
Q ss_pred eeEEEecccCCChHHHHhcCC----------CCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCc
Q 005864 476 SFLVYECLERGSLAEILSNDG----------SIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYE 545 (673)
Q Consensus 476 ~~lv~e~~~~gsL~~~l~~~~----------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~ 545 (673)
.++|||||++|+|.++++..+ ....++|.++..|+.|||+||+|||++ +|+||||||+|||+++++.
T Consensus 90 ~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl~~~~~ 166 (299)
T 4asz_A 90 LIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLL 166 (299)
T ss_dssp EEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGC
T ss_pred EEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccCHhhEEECCCCc
Confidence 999999999999999997643 234689999999999999999999999 9999999999999999999
Q ss_pred eEEecccceeecCCCCCCc--eecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCccccccccccccccc
Q 005864 546 ARVSDFGIAKFLKPGSSNW--TEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNL 622 (673)
Q Consensus 546 ~kl~Dfg~~~~~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~ 622 (673)
+||+|||+|+......... ....||+.|||||++.+..++.++|||||||++|||+| |+.||......+
T Consensus 167 ~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~-------- 238 (299)
T 4asz_A 167 VKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNE-------- 238 (299)
T ss_dssp EEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH--------
T ss_pred EEECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHH--------
Confidence 9999999998764433221 23468999999999999999999999999999999999 899997543221
Q ss_pred ccccccCCC-CCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 623 SLNEILDPR-LPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 623 ~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
....+.... ++.|. ..+.++.+++.+||+.||++||||+||++.|+
T Consensus 239 ~~~~i~~~~~~~~p~----~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~ 285 (299)
T 4asz_A 239 VIECITQGRVLQRPR----TCPQEVYELMLGCWQREPHMRKNIKGIHTLLQ 285 (299)
T ss_dssp HHHHHHHTCCCCCCT----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCc----cchHHHHHHHHHHcCCChhHCcCHHHHHHHHH
Confidence 111222222 22222 23446899999999999999999999999886
No 4
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=5.6e-54 Score=435.69 Aligned_cols=253 Identities=25% Similarity=0.401 Sum_probs=203.2
Q ss_pred cCCCccceeccCCcEEEEEEEeC------CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCe
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP------SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRH 475 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~ 475 (673)
++|.+.+.||+|+||+||+|++. +++.||||+++.. .....++|.+|+++|++++|||||+++|+|.+++.
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~---~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~ 117 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA---SESARQDFQREAELLTMLQHQHIVRFFGVCTEGRP 117 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCC---SHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcC---CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCE
Confidence 35667789999999999999864 4788999999754 23356789999999999999999999999999999
Q ss_pred eeEEEecccCCChHHHHhcCCC------------CccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCC
Q 005864 476 SFLVYECLERGSLAEILSNDGS------------IKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSE 543 (673)
Q Consensus 476 ~~lv~e~~~~gsL~~~l~~~~~------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~ 543 (673)
.++|||||++|+|.++++..+. ..+++|.++..|+.|||+||+|||++ +|+||||||+|||++++
T Consensus 118 ~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NILl~~~ 194 (329)
T 4aoj_A 118 LLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVGQG 194 (329)
T ss_dssp EEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETT
T ss_pred EEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHhhEEECCC
Confidence 9999999999999999986532 23589999999999999999999999 99999999999999999
Q ss_pred CceEEecccceeecCCCCC--CceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCccccccccccccc
Q 005864 544 YEARVSDFGIAKFLKPGSS--NWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNM 620 (673)
Q Consensus 544 ~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~ 620 (673)
+.+||+|||+++....... ......||+.|||||++.+..++.++|||||||++|||+| |+.||......+.
T Consensus 195 ~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~----- 269 (329)
T 4aoj_A 195 LVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEA----- 269 (329)
T ss_dssp TEEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHH-----
T ss_pred CcEEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHHHH-----
Confidence 9999999999987644322 2234679999999999999999999999999999999999 8999975432211
Q ss_pred ccccccccCC-CCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 621 NLSLNEILDP-RLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 621 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
...+... +++.|.. .+.++.+++.+||+.||++||||+||++.|+
T Consensus 270 ---~~~i~~g~~~~~p~~----~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~ 315 (329)
T 4aoj_A 270 ---IDCITQGRELERPRA----CPPEVYAIMRGCWQREPQQRHSIKDVHARLQ 315 (329)
T ss_dssp ---HHHHHHTCCCCCCTT----CCHHHHHHHHHHCCSSTTTSCCHHHHHHHHH
T ss_pred ---HHHHHcCCCCCCccc----ccHHHHHHHHHHcCcChhHCcCHHHHHHHHH
Confidence 1111111 2233322 3446899999999999999999999999886
No 5
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=3e-54 Score=437.03 Aligned_cols=252 Identities=21% Similarity=0.305 Sum_probs=206.0
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
++|++.+.||+|+||+||+|++. +|+.||||++...... ....+.+.+|++++++++|||||++++++.+++..|+||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~-~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVm 102 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMS-SKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVM 102 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCC-HHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEE
Confidence 57999999999999999999764 6999999999765433 334678999999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
|||+||+|.+++...+. ..+++.++..|+.||+.||+|||++ +|+||||||+|||++.++.+||+|||+|+.....
T Consensus 103 Ey~~gg~L~~~i~~~~~-~~~~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~ 178 (350)
T 4b9d_A 103 DYCEGGDLFKRINAQKG-VLFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTVQLGDFGIARVLNST 178 (350)
T ss_dssp ECCTTCBHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHHHT---TCEETTCCGGGEEECTTCCEEECSTTEESCCCHH
T ss_pred eCCCCCcHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCCEEEcccccceeecCC
Confidence 99999999999976542 4578899999999999999999999 9999999999999999999999999999876543
Q ss_pred CCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcchH
Q 005864 561 SSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRNIQ 640 (673)
Q Consensus 561 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (673)
....+...||+.|||||++.+..|+.++||||+||++|||++|+.||...... .....+.....+... .
T Consensus 179 ~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~--------~~~~~i~~~~~~~~~---~ 247 (350)
T 4b9d_A 179 VELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMK--------NLVLKIISGSFPPVS---L 247 (350)
T ss_dssp HHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH--------HHHHHHHHTCCCCCC---T
T ss_pred cccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH--------HHHHHHHcCCCCCCC---c
Confidence 33334567999999999999999999999999999999999999999743321 122223333332111 1
Q ss_pred HHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 641 DKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 641 ~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
..+.++.+++.+||+.||++|||++|+++
T Consensus 248 ~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 248 HYSYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp TSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred cCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 23456889999999999999999999975
No 6
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=8e-54 Score=433.19 Aligned_cols=249 Identities=26% Similarity=0.379 Sum_probs=211.1
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
..|+..+.||+|+||+||+|++. +|+.||||++...... ..+.+.+|+.+|++++|||||++++++.+++..|+||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~---~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivm 150 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQ---RRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVM 150 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCS---SGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchh---HHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence 46888999999999999999775 6999999999754322 2456889999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
|||+||+|.+++... .+++.++..++.||+.||+|||++ +|+||||||+|||++.++.+||+|||+|+.+...
T Consensus 151 Ey~~gg~L~~~l~~~----~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~ 223 (346)
T 4fih_A 151 EFLEGGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE 223 (346)
T ss_dssp CCCTTEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSS
T ss_pred eCCCCCcHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEECCCCCEEEecCcCceecCCC
Confidence 999999999999763 489999999999999999999999 9999999999999999999999999999988666
Q ss_pred CCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcchH
Q 005864 561 SSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRNIQ 640 (673)
Q Consensus 561 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (673)
.......+||+.|||||++.+..|+.++||||+||++|||++|+.||......+. ...+.+. .+.....+.
T Consensus 224 ~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~--------~~~i~~~-~~~~~~~~~ 294 (346)
T 4fih_A 224 VPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKA--------MKMIRDN-LPPRLKNLH 294 (346)
T ss_dssp SCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH--------HHHHHHS-SCCCCSCGG
T ss_pred CCcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHH--------HHHHHcC-CCCCCCccc
Confidence 5566678999999999999999999999999999999999999999974332211 1111111 111112233
Q ss_pred HHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 641 DKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 641 ~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
..+.++.+++.+||+.||++|||++|+++
T Consensus 295 ~~s~~~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 295 KVSPSLKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp GSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred cCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 44567899999999999999999999975
No 7
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=1.6e-53 Score=424.42 Aligned_cols=248 Identities=21% Similarity=0.328 Sum_probs=213.1
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
++|++.+.||+|+||+||+|+.. +|+.||||++.+.........+.+.+|++++++++|||||++++++.+++..|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 46999999999999999999764 79999999998765445555788999999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
|||+||+|.+++...+ .+++.++..++.||+.||+|||++ +|+||||||+|||++.++.+||+|||+|+.+...
T Consensus 112 Ey~~gG~L~~~i~~~~---~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~ 185 (311)
T 4aw0_A 112 SYAKNGELLKYIRKIG---SFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE 185 (311)
T ss_dssp CCCTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred ecCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEEcCCCCEEEEEcCCceecCCC
Confidence 9999999999998753 589999999999999999999999 9999999999999999999999999999987543
Q ss_pred CC--CceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcc
Q 005864 561 SS--NWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRN 638 (673)
Q Consensus 561 ~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (673)
.. .....+||+.|||||++.+..|+.++||||+||++|||++|+.||..... ......+....+..+..
T Consensus 186 ~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~--------~~~~~~i~~~~~~~p~~- 256 (311)
T 4aw0_A 186 SKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE--------GLIFAKIIKLEYDFPEK- 256 (311)
T ss_dssp TTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSH--------HHHHHHHHHTCCCCCTT-
T ss_pred CCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH--------HHHHHHHHcCCCCCCcc-
Confidence 32 34567899999999999999999999999999999999999999974322 12223333334444332
Q ss_pred hHHHHHHHHHHHHHcccCCCCCCCCHHHH
Q 005864 639 IQDKLISILEVALLCLEESPESRPTMQTV 667 (673)
Q Consensus 639 ~~~~~~~l~~li~~cl~~dp~~Rps~~~v 667 (673)
.+.++.+++.+||+.||++|||++|+
T Consensus 257 ---~s~~~~dli~~lL~~dp~~R~t~~e~ 282 (311)
T 4aw0_A 257 ---FFPKARDLVEKLLVLDATKRLGCEEM 282 (311)
T ss_dssp ---CCHHHHHHHHHHSCSSGGGSTTSGGG
T ss_pred ---cCHHHHHHHHHHccCCHhHCcChHHH
Confidence 23458899999999999999999886
No 8
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=1.5e-52 Score=412.07 Aligned_cols=248 Identities=23% Similarity=0.345 Sum_probs=194.3
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
++|++.+.||+|+||+||+|+.. +|+.||||++.+....+....+.+.+|++++++++|||||++++++.+++..++||
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm 92 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence 57999999999999999999764 69999999997765555555678999999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
||+ +|+|.+++...+ .+++.++..++.||+.||+|||++ +|+||||||+||++++++.+||+|||+|+.....
T Consensus 93 Ey~-~g~L~~~l~~~~---~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~ 165 (275)
T 3hyh_A 93 EYA-GNELFDYIVQRD---KMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDG 165 (275)
T ss_dssp ECC-CEEHHHHHHHSC---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTCCEEECCSSCC------
T ss_pred eCC-CCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccccCChHHeEECCCCCEEEeecCCCeecCCC
Confidence 999 679999998764 589999999999999999999999 9999999999999999999999999999876443
Q ss_pred CCCceecccccccccccccccCCc-CcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcch
Q 005864 561 SSNWTEFAGTFGYVAPELAYTMKV-TEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRNI 639 (673)
Q Consensus 561 ~~~~~~~~~~~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (673)
.......||+.|||||++.+..+ +.++||||+||++|||+||+.||..... ......+.......+..
T Consensus 166 -~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~--------~~~~~~i~~~~~~~p~~-- 234 (275)
T 3hyh_A 166 -NFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESI--------PVLFKNISNGVYTLPKF-- 234 (275)
T ss_dssp ----------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--------HHHHHHHHHTCCCCCTT--
T ss_pred -CccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCH--------HHHHHHHHcCCCCCCCC--
Confidence 23345789999999999998876 5799999999999999999999974322 11122223333333322
Q ss_pred HHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 640 QDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 640 ~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.+.++.+++.+||+.||++|||++|+++
T Consensus 235 --~s~~~~~li~~~L~~dP~~R~s~~eil~ 262 (275)
T 3hyh_A 235 --LSPGAAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp --SCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred --CCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence 2345889999999999999999999986
No 9
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=1.8e-52 Score=433.81 Aligned_cols=249 Identities=26% Similarity=0.374 Sum_probs=210.8
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
+.|+..+.||+|+||+||+|++. +|+.||||++...... ..+.+.+|+.+|+.++|||||++++++.+++..|+||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~---~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVm 227 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQ---RRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVM 227 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCS---SGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchh---HHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEE
Confidence 56999999999999999999775 6999999999754322 2456889999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
|||+||+|.++++.. .+++.++..++.||+.||+|||++ +|+||||||+|||++.++.+||+|||+|+.+...
T Consensus 228 Ey~~gG~L~~~i~~~----~l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~ 300 (423)
T 4fie_A 228 EFLEGGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE 300 (423)
T ss_dssp ECCTTEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEECCCTTCEECCSS
T ss_pred eCCCCCcHHHHHhcc----CCCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEecCccceECCCC
Confidence 999999999999764 388999999999999999999999 9999999999999999999999999999988766
Q ss_pred CCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcchH
Q 005864 561 SSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRNIQ 640 (673)
Q Consensus 561 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (673)
.......+||+.|||||++.+..|+.++||||+||++|||++|+.||......+... .......+.+.. +.
T Consensus 301 ~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~-----~i~~~~~~~~~~----~~ 371 (423)
T 4fie_A 301 VPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMK-----MIRDNLPPRLKN----LH 371 (423)
T ss_dssp CCCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHH-----HHHHSCCCCCSC----TT
T ss_pred CccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHH-----HHHcCCCCCCcc----cc
Confidence 566677889999999999999999999999999999999999999997433221110 111111122221 22
Q ss_pred HHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 641 DKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 641 ~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
..+.++.+++.+||+.||++|||++|+++
T Consensus 372 ~~s~~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 372 KVSPSLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp SSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred cCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 33456889999999999999999999975
No 10
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=1.2e-52 Score=423.42 Aligned_cols=248 Identities=23% Similarity=0.261 Sum_probs=202.0
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
+.|+..+.||+|+||+||+|++. +|+.||||+++.... ..+|+.++++++|||||++++++.+++..|+||
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~--------~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivm 129 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF--------RVEELVACAGLSSPRIVPLYGAVREGPWVNIFM 129 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC--------CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh--------HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence 45777889999999999999775 699999999875321 236999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCC-ceEEecccceeecCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEY-EARVSDFGIAKFLKP 559 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~-~~kl~Dfg~~~~~~~ 559 (673)
|||+||+|.++++..+ .+++.++..++.||+.||+|||++ +|+||||||+|||++.++ .+||+|||+|+.+..
T Consensus 130 Ey~~gg~L~~~l~~~~---~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~ 203 (336)
T 4g3f_A 130 ELLEGGSLGQLIKQMG---CLPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAALCDFGHALCLQP 203 (336)
T ss_dssp CCCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEEECCCTTCEEC--
T ss_pred eccCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEeCCCCEEEEeeCCCCeEccC
Confidence 9999999999998753 589999999999999999999999 999999999999999987 699999999998754
Q ss_pred CCCC-----ceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCC
Q 005864 560 GSSN-----WTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPL 634 (673)
Q Consensus 560 ~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (673)
.... .....||+.|||||++.+..|+.++||||+||++|||+||+.||......+ ....+.....+.
T Consensus 204 ~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~--------~~~~i~~~~~~~ 275 (336)
T 4g3f_A 204 DGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGP--------LCLKIASEPPPI 275 (336)
T ss_dssp ----------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSC--------CHHHHHHSCCGG
T ss_pred CCcccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHH--------HHHHHHcCCCCc
Confidence 3221 233579999999999999999999999999999999999999997432211 111111111110
Q ss_pred CCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 635 PSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 635 ~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
...+...+..+.+++.+||+.||++|||+.|+++.|.
T Consensus 276 -~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~ 312 (336)
T 4g3f_A 276 -REIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVG 312 (336)
T ss_dssp -GGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred -hhcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHH
Confidence 0111233456889999999999999999999998764
No 11
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=4.7e-52 Score=412.30 Aligned_cols=248 Identities=23% Similarity=0.357 Sum_probs=198.6
Q ss_pred CccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeec----CCeeeEE
Q 005864 405 DAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSH----PRHSFLV 479 (673)
Q Consensus 405 ~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~----~~~~~lv 479 (673)
++.+.||+|+||+||+|.+. +++.||+|++...... ....+.|.+|++++++++|||||+++++|.+ ++..++|
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~-~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lv 107 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLT-KSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLV 107 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSC-HHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCC-HHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEE
Confidence 56678999999999999765 6899999999765333 3346789999999999999999999999864 3567999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCC-CCceEEecccceeecC
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSS-EYEARVSDFGIAKFLK 558 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~-~~~~kl~Dfg~~~~~~ 558 (673)
||||++|+|.+++++. ..+++..+..++.||+.||+|||++.. +|+||||||+|||++. ++.+||+|||+|+...
T Consensus 108 mEy~~gg~L~~~l~~~---~~l~~~~~~~~~~qi~~aL~ylH~~~~-~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~ 183 (290)
T 3fpq_A 108 TELMTSGTLKTYLKRF---KVMKIKVLRSWCRQILKGLQFLHTRTP-PIIHRDLKCDNIFITGPTGSVKIGDLGLATLKR 183 (290)
T ss_dssp EECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHTSSS-CCCCCCCCGGGEEESSTTSCEEECCTTGGGGCC
T ss_pred EeCCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCC-CEEecccChhheeEECCCCCEEEEeCcCCEeCC
Confidence 9999999999999875 358899999999999999999999811 3999999999999984 7899999999997543
Q ss_pred CCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcc
Q 005864 559 PGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRN 638 (673)
Q Consensus 559 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (673)
........||+.|||||++.+ .|+.++|||||||++|||+||+.||....... .....+.....+ ...
T Consensus 184 --~~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~-------~~~~~i~~~~~~--~~~ 251 (290)
T 3fpq_A 184 --ASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAA-------QIYRRVTSGVKP--ASF 251 (290)
T ss_dssp --TTSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHH-------HHHHHHTTTCCC--GGG
T ss_pred --CCccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHH-------HHHHHHHcCCCC--CCC
Confidence 234456789999999998864 69999999999999999999999996432111 111111111111 111
Q ss_pred hHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 639 IQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 639 ~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
....+.++.+++.+||+.||++|||++|+++
T Consensus 252 ~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~ 282 (290)
T 3fpq_A 252 DKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp GGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 1223346889999999999999999999986
No 12
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=1.2e-52 Score=418.53 Aligned_cols=249 Identities=24% Similarity=0.298 Sum_probs=201.4
Q ss_pred cCCCccceeccCCcEEEEEEEeC----CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeee
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP----SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSF 477 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 477 (673)
++|++.+.||+|+||+||+|+.. +++.||||+++....... ....+.+|++++++++|||||++++++.+++..|
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~-~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ 102 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVR-DRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLY 102 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEE-ECC------CCCCCCCCTTEECEEEEEEETTEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChH-HHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEE
Confidence 46999999999999999999752 478999999976533222 2346888999999999999999999999999999
Q ss_pred EEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeec
Q 005864 478 LVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFL 557 (673)
Q Consensus 478 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~ 557 (673)
+|||||+||+|.+++.+.+ .+++.++..++.||+.||+|||++ +|+||||||+|||+++++.+||+|||+|+..
T Consensus 103 ivmEy~~gg~L~~~l~~~~---~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~ 176 (304)
T 3ubd_A 103 LILDFLRGGDLFTRLSKEV---MFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKES 176 (304)
T ss_dssp EEECCCTTCEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTSCEEEESSEEEEC-
T ss_pred EEEEcCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHeEEcCCCCEEecccccceec
Confidence 9999999999999998753 589999999999999999999999 9999999999999999999999999999876
Q ss_pred CCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCc
Q 005864 558 KPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSR 637 (673)
Q Consensus 558 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (673)
...........||+.|||||++.+..|+.++||||+||++|||+||+.||...... .....+.......+..
T Consensus 177 ~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~--------~~~~~i~~~~~~~p~~ 248 (304)
T 3ubd_A 177 IDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRK--------ETMTMILKAKLGMPQF 248 (304)
T ss_dssp ----CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--------HHHHHHHHCCCCCCTT
T ss_pred cCCCccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHH--------HHHHHHHcCCCCCCCc
Confidence 55445556678999999999999999999999999999999999999999743221 2222333333443332
Q ss_pred chHHHHHHHHHHHHHcccCCCCCCCCH-----HHHHH
Q 005864 638 NIQDKLISILEVALLCLEESPESRPTM-----QTVCQ 669 (673)
Q Consensus 638 ~~~~~~~~l~~li~~cl~~dp~~Rps~-----~~v~~ 669 (673)
.+.++.+++.+||+.||++|||+ +|+++
T Consensus 249 ----~s~~~~~li~~~L~~dP~~R~ta~~~~~~eil~ 281 (304)
T 3ubd_A 249 ----LSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKR 281 (304)
T ss_dssp ----SCHHHHHHHHHHTCSSGGGSTTCSTTTHHHHHT
T ss_pred ----CCHHHHHHHHHHcccCHHHCCCCCcCCHHHHHc
Confidence 34468899999999999999984 67653
No 13
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=3.1e-52 Score=426.14 Aligned_cols=262 Identities=23% Similarity=0.352 Sum_probs=212.1
Q ss_pred HHHHHHhcCCCccceeccCCcEEEEEEEeC------CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCC-Cccccee
Q 005864 395 EEIIRATKNFDAEQCIGIGGQASVYRGELP------SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRH-RNIVKFY 467 (673)
Q Consensus 395 ~~~~~~~~~~~~~~~ig~G~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h-~niv~l~ 467 (673)
.+++...++|++.+.||+|+||+||+|.+. .++.||||+++.... ....+.|.+|+++|.+++| ||||+++
T Consensus 57 ~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~--~~~~~~~~~E~~il~~l~hhpnIV~l~ 134 (353)
T 4ase_A 57 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT--HSEHRALMSELKILIHIGHHLNVVNLL 134 (353)
T ss_dssp HHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCC--HHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred cccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccC--hHHHHHHHHHHHHHHHcCCCCcEEEEE
Confidence 345555678999999999999999999753 246899999876432 3346789999999999965 8999999
Q ss_pred eeeecC-CeeeEEEecccCCChHHHHhcCCC-------------CccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecC
Q 005864 468 GFCSHP-RHSFLVYECLERGSLAEILSNDGS-------------IKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDI 533 (673)
Q Consensus 468 ~~~~~~-~~~~lv~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl 533 (673)
|+|.++ +..++|||||++|+|.++|+.... ...++|..+..++.|||+||+|||++ +||||||
T Consensus 135 g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~---~iiHRDL 211 (353)
T 4ase_A 135 GACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDL 211 (353)
T ss_dssp EEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCC
T ss_pred EEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhC---CeecCcc
Confidence 999764 568999999999999999976421 23589999999999999999999999 9999999
Q ss_pred CCCCeEeCCCCceEEecccceeecCCCCCC--ceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCccc
Q 005864 534 SSKNVLLSSEYEARVSDFGIAKFLKPGSSN--WTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFI 610 (673)
Q Consensus 534 k~~Nill~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~ 610 (673)
||+|||+++++.+||+|||+|+.+...... .....||+.|||||++.+..|+.++|||||||++|||+| |+.||...
T Consensus 212 K~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~ 291 (353)
T 4ase_A 212 AARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV 291 (353)
T ss_dssp SGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred CccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCC
Confidence 999999999999999999999876544332 234578999999999999999999999999999999998 99999754
Q ss_pred ccccccccccccccccccC-CCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 611 SLLSSSSSNMNLSLNEILD-PRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
...+. ....+.+ .+++.|.. .+.++.+++.+||+.||++||||+|+++.|+
T Consensus 292 ~~~~~-------~~~~i~~g~~~~~p~~----~~~~~~~li~~c~~~dP~~RPt~~eil~~L~ 343 (353)
T 4ase_A 292 KIDEE-------FCRRLKEGTRMRAPDY----TTPEMYQTMLDCWHGEPSQRPTFSELVEHLG 343 (353)
T ss_dssp CCSHH-------HHHHHHHTCCCCCCTT----CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CHHHH-------HHHHHHcCCCCCCCcc----CCHHHHHHHHHHcCcChhHCcCHHHHHHHHH
Confidence 32111 0111111 12333322 2346889999999999999999999999885
No 14
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=1.2e-51 Score=416.10 Aligned_cols=262 Identities=24% Similarity=0.302 Sum_probs=199.6
Q ss_pred cCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCC----eee
Q 005864 402 KNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPR----HSF 477 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~----~~~ 477 (673)
++|.+.+.||+|+||+||+|++ +|+.||||++..... ....+..|+..+.+++|||||+++|+|.+++ ..+
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~----~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~ 77 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREE----RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLW 77 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGH----HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccch----hhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEE
Confidence 4567789999999999999988 689999999865321 1223445677778899999999999998654 579
Q ss_pred EEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcC-----CCCeEEecCCCCCeEeCCCCceEEeccc
Q 005864 478 LVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDC-----FPPIVHRDISSKNVLLSSEYEARVSDFG 552 (673)
Q Consensus 478 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~-----~~~ivH~dlk~~Nill~~~~~~kl~Dfg 552 (673)
+|||||++|+|.++++.. .++|..+.+++.|+|+||+|||+++ .++|+||||||+|||++.++.+||+|||
T Consensus 78 lV~Ey~~~gsL~~~l~~~----~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFG 153 (303)
T 3hmm_A 78 LVSDYHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLG 153 (303)
T ss_dssp EEEECCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCT
T ss_pred EEecCCCCCcHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCC
Confidence 999999999999999864 4899999999999999999999762 3589999999999999999999999999
Q ss_pred ceeecCCCCCC----ceecccccccccccccccC------CcCcchhHHHHHHHHHHHHhCCCCCccccccccccc----
Q 005864 553 IAKFLKPGSSN----WTEFAGTFGYVAPELAYTM------KVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSS---- 618 (673)
Q Consensus 553 ~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~------~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~---- 618 (673)
+|+........ .....||+.|||||++.+. .++.++|||||||++|||+||..||......+....
T Consensus 154 la~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~ 233 (303)
T 3hmm_A 154 LAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVP 233 (303)
T ss_dssp TCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSC
T ss_pred CCccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhccc
Confidence 99887554332 2345799999999998754 477899999999999999999988754322111000
Q ss_pred ---ccccccccccCCCCC--CCCc-chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 619 ---NMNLSLNEILDPRLP--LPSR-NIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 619 ---~~~~~~~~~~~~~~~--~~~~-~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
........+....+. .+.. ...+.+..+.+++.+||+.||++||||.||++.|+
T Consensus 234 ~~~~~~~~~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~ 293 (303)
T 3hmm_A 234 SDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLS 293 (303)
T ss_dssp SSCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHH
T ss_pred ccchHHHHHHHHhcccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHH
Confidence 001111112222221 1111 12345667899999999999999999999999986
No 15
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=9.1e-51 Score=407.21 Aligned_cols=250 Identities=20% Similarity=0.367 Sum_probs=195.2
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCC------
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPR------ 474 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~------ 474 (673)
++|++.+.||+|+||+||+|++. +|+.||||+++... .....+.+.+|+++|++++|||||++++++.+.+
T Consensus 5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~--~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~ 82 (299)
T 4g31_A 5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPN--RELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQ 82 (299)
T ss_dssp HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECS--SHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC------
T ss_pred hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccC--CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccc
Confidence 46899999999999999999764 79999999987543 2334678999999999999999999999986544
Q ss_pred ------eeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEE
Q 005864 475 ------HSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARV 548 (673)
Q Consensus 475 ------~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl 548 (673)
..|+|||||++|+|.+++.........++..+..++.||++||+|||++ +|+||||||+|||++.++.+||
T Consensus 83 ~~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~---~IiHRDlKp~NILl~~~~~vKl 159 (299)
T 4g31_A 83 PSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKV 159 (299)
T ss_dssp ----CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEE
T ss_pred ccCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHC---cCccccCcHHHeEECCCCcEEE
Confidence 3689999999999999999876656677788899999999999999999 9999999999999999999999
Q ss_pred ecccceeecCCCCC------------CceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCccccccccc
Q 005864 549 SDFGIAKFLKPGSS------------NWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSS 616 (673)
Q Consensus 549 ~Dfg~~~~~~~~~~------------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~ 616 (673)
+|||+|+.+..... ..+..+||+.|||||++.+..|+.++||||+||++|||++ ||.....
T Consensus 160 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~~---- 232 (299)
T 4g31_A 160 GDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQME---- 232 (299)
T ss_dssp CCCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHHH----
T ss_pred ccCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCccH----
Confidence 99999987754322 1233579999999999999999999999999999999996 7653211
Q ss_pred ccccccccccccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 617 SSNMNLSLNEILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.......+.....+ ...........+++.+||+.||++|||+.|+++
T Consensus 233 ---~~~~~~~~~~~~~p---~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 279 (299)
T 4g31_A 233 ---RVRTLTDVRNLKFP---PLFTQKYPCEYVMVQDMLSPSPMERPEAINIIE 279 (299)
T ss_dssp ---HHHHHHHHHTTCCC---HHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ---HHHHHHHHhcCCCC---CCCcccCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 00111112222222 233444556788999999999999999999986
No 16
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.6e-47 Score=398.32 Aligned_cols=260 Identities=20% Similarity=0.303 Sum_probs=201.1
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeec------CC
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSH------PR 474 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~------~~ 474 (673)
++|++.+.||+|+||+||+|++. +|+.||||+++..... ....+.+.+|+++|+.++|||||++++++.. .+
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~-~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~ 132 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDV-VTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFK 132 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSS-HHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCC
T ss_pred CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccc-hHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCC
Confidence 57999999999999999999764 7999999999764322 3346778899999999999999999998754 35
Q ss_pred eeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccce
Q 005864 475 HSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIA 554 (673)
Q Consensus 475 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~ 554 (673)
..|+|||||+ |+|.+++... ..+++..+..++.||+.||+|||++ +|+||||||+|||++.++.+||+|||+|
T Consensus 133 ~~~ivmE~~~-g~L~~~i~~~---~~l~~~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NIl~~~~~~~Ki~DFGla 205 (398)
T 4b99_A 133 SVYVVLDLME-SDLHQIIHSS---QPLTLEHVRYFLYQLLRGLKYMHSA---QVIHRDLKPSNLLVNENCELKIGDFGMA 205 (398)
T ss_dssp CEEEEEECCS-EEHHHHHTSS---SCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTC
T ss_pred EEEEEEeCCC-CCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---cCcCCCcCccccccCCCCCEEEeeccee
Confidence 7899999996 5899999865 3589999999999999999999999 9999999999999999999999999999
Q ss_pred eecCCC----CCCceecccccccccccccccC-CcCcchhHHHHHHHHHHHHhCCCCCcccccccccccc-------ccc
Q 005864 555 KFLKPG----SSNWTEFAGTFGYVAPELAYTM-KVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSN-------MNL 622 (673)
Q Consensus 555 ~~~~~~----~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~-------~~~ 622 (673)
+.+... .......+||+.|||||++.+. .++.++||||+||++|||++|+.||......+..... ...
T Consensus 206 ~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~~I~~~~g~p~~~ 285 (398)
T 4b99_A 206 RGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPA 285 (398)
T ss_dssp BCC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCGG
T ss_pred eecccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCChH
Confidence 866432 2233457899999999998775 4689999999999999999999999754322110000 000
Q ss_pred cc--------ccccCCCCCCCCcch----HHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 623 SL--------NEILDPRLPLPSRNI----QDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 623 ~~--------~~~~~~~~~~~~~~~----~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.. ...+..........+ ...+.++.+|+.+||..||++|||++|+++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~ 344 (398)
T 4b99_A 286 VIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALR 344 (398)
T ss_dssp GTC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred HhhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence 00 000000000001111 112356889999999999999999999875
No 17
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=1.3e-46 Score=387.54 Aligned_cols=200 Identities=26% Similarity=0.338 Sum_probs=171.2
Q ss_pred HHHHHHhcCCCccceeccCCcEEEEEEEeC----CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhcc-CCCcccceeee
Q 005864 395 EEIIRATKNFDAEQCIGIGGQASVYRGELP----SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEI-RHRNIVKFYGF 469 (673)
Q Consensus 395 ~~~~~~~~~~~~~~~ig~G~~g~vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~ 469 (673)
+.+....+.|++.+.||+|+||+||+|+.+ +++.||+|++.... ...++.+|++++..+ +|||||+++++
T Consensus 14 ~~~p~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~-----~~~~~~~E~~~l~~~~~h~nIv~l~~~ 88 (361)
T 4f9c_A 14 EAVPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS-----HPIRIAAELQCLTVAGGQDNVMGVKYC 88 (361)
T ss_dssp HHSGGGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS-----CHHHHHHHHHHHHHTCSBTTBCCCSEE
T ss_pred HhcCCccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc-----CHHHHHHHHHHHHHhcCCCCCceEEEE
Confidence 344445678999999999999999999653 57889999886532 235678899999998 69999999999
Q ss_pred eecCCeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCC-CceEE
Q 005864 470 CSHPRHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSE-YEARV 548 (673)
Q Consensus 470 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~-~~~kl 548 (673)
+.+++..++||||+++|+|.++++ .+++.++..++.|++.||+|||++ +|+||||||+|||++.+ +.+||
T Consensus 89 ~~~~~~~~lvmE~~~g~~L~~~~~------~l~~~~~~~~~~qll~al~ylH~~---gIiHRDiKPeNiLl~~~~~~~kl 159 (361)
T 4f9c_A 89 FRKNDHVVIAMPYLEHESFLDILN------SLSFQEVREYMLNLFKALKRIHQF---GIVHRDVKPSNFLYNRRLKKYAL 159 (361)
T ss_dssp EEETTEEEEEEECCCCCCHHHHHT------TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEE
T ss_pred EEECCEEEEEEeCCCcccHHHHHc------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCcCCHHHeEEeCCCCeEEE
Confidence 999999999999999999999984 378899999999999999999999 99999999999999876 79999
Q ss_pred ecccceeecCCCCC----------------------------CceecccccccccccccccC-CcCcchhHHHHHHHHHH
Q 005864 549 SDFGIAKFLKPGSS----------------------------NWTEFAGTFGYVAPELAYTM-KVTEKCDVYSFGVLALE 599 (673)
Q Consensus 549 ~Dfg~~~~~~~~~~----------------------------~~~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~il~e 599 (673)
+|||+|+....... ..+..+||+.|+|||++.+. .++.++||||+||++||
T Consensus 160 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~e 239 (361)
T 4f9c_A 160 VDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLS 239 (361)
T ss_dssp CCCTTCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHH
T ss_pred CcCCCCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHH
Confidence 99999986543211 12345799999999998775 48999999999999999
Q ss_pred HHhCCCCCc
Q 005864 600 VIKGKHPRD 608 (673)
Q Consensus 600 l~~g~~p~~ 608 (673)
|++|+.||.
T Consensus 240 ll~G~~Pf~ 248 (361)
T 4f9c_A 240 LLSGRYPFY 248 (361)
T ss_dssp HHHTCSSSS
T ss_pred HHHCCCCCC
Confidence 999999985
No 18
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=100.00 E-value=3e-46 Score=408.31 Aligned_cols=251 Identities=21% Similarity=0.302 Sum_probs=213.1
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
++|++.+.||+|+||+||+|..+ +|+.||+|++..... ...+.+.+|+.+|+.++|||||++++++.+++..++||
T Consensus 157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~---~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~ 233 (573)
T 3uto_A 157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHE---SDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIY 233 (573)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSH---HHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccch---hhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEE
Confidence 57999999999999999999765 699999999876432 23567889999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCC--CceEEecccceeecC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSE--YEARVSDFGIAKFLK 558 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~--~~~kl~Dfg~~~~~~ 558 (673)
|||+||+|.+++.... ..+++.++..++.||+.||+|||++ +|+||||||+|||++.+ +.+||+|||+|+.+.
T Consensus 234 E~~~gg~L~~~i~~~~--~~l~e~~~~~~~~qi~~al~ylH~~---~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~ 308 (573)
T 3uto_A 234 EFMSGGELFEKVADEH--NKMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLD 308 (573)
T ss_dssp ECCCCCBHHHHHTCTT--SCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCSSCEECC
T ss_pred eecCCCcHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhccccCCCCCCEEEeeccceeEcc
Confidence 9999999999997543 4589999999999999999999999 99999999999999854 789999999999875
Q ss_pred CCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcc
Q 005864 559 PGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRN 638 (673)
Q Consensus 559 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (673)
.. .......||+.|||||++.+..|+.++||||+||++|||++|+.||..... ......+.......+...
T Consensus 309 ~~-~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~--------~~~~~~i~~~~~~~~~~~ 379 (573)
T 3uto_A 309 PK-QSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGEND--------DETLRNVKSCDWNMDDSA 379 (573)
T ss_dssp TT-SEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH--------HHHHHHHHTTCCCCCSGG
T ss_pred CC-CceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH--------HHHHHHHHhCCCCCCccc
Confidence 43 334557899999999999999999999999999999999999999974322 122233333333333344
Q ss_pred hHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 639 IQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 639 ~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
+...+.++.+|+.+||+.||.+|||++|+++
T Consensus 380 ~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~ 410 (573)
T 3uto_A 380 FSGISEDGKDFIRKLLLADPNTRMTIHQALE 410 (573)
T ss_dssp GTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred ccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 4445567899999999999999999999986
No 19
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=2.8e-46 Score=404.30 Aligned_cols=251 Identities=21% Similarity=0.237 Sum_probs=203.4
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHH---HHHHHHHHHhccCCCcccceeeeeecCCeee
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQR---EFLNEIKALTEIRHRNIVKFYGFCSHPRHSF 477 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~---~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 477 (673)
++|++.+.||+|+||+||+|+.. +|+.||||++.+.......... ....++.+++.++|||||++++++.+++..|
T Consensus 189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~ly 268 (689)
T 3v5w_A 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS 268 (689)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEE
Confidence 57999999999999999999775 6999999999765433322223 3344567778889999999999999999999
Q ss_pred EEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeec
Q 005864 478 LVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFL 557 (673)
Q Consensus 478 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~ 557 (673)
+|||||+||+|.+++...+ .+++..+..++.||+.||+|||++ +||||||||+|||++.+|.+||+|||+|+.+
T Consensus 269 lVmEy~~GGdL~~~l~~~~---~l~E~~a~~y~~qIl~aL~yLH~~---gIiHRDLKPeNILld~~G~vKL~DFGlA~~~ 342 (689)
T 3v5w_A 269 FILDLMNGGDLHYHLSQHG---VFSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDF 342 (689)
T ss_dssp EEECCCCSCBHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred EEEecCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHeEEeCCCCEEecccceeeec
Confidence 9999999999999998753 489999999999999999999999 9999999999999999999999999999877
Q ss_pred CCCCCCceeccccccccccccccc-CCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCC
Q 005864 558 KPGSSNWTEFAGTFGYVAPELAYT-MKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPS 636 (673)
Q Consensus 558 ~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (673)
... .....+||+.|||||++.. ..|+.++|+||+||++|||++|+.||....... .......+.......+.
T Consensus 343 ~~~--~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~-----~~~i~~~i~~~~~~~p~ 415 (689)
T 3v5w_A 343 SKK--KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKD-----KHEIDRMTLTMAVELPD 415 (689)
T ss_dssp SSC--CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCC-----HHHHHHHHHHCCCCCCT
T ss_pred CCC--CCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH-----HHHHHHhhcCCCCCCCc
Confidence 543 2345689999999999964 579999999999999999999999997432211 11112222233333332
Q ss_pred cchHHHHHHHHHHHHHcccCCCCCCCC-----HHHHHH
Q 005864 637 RNIQDKLISILEVALLCLEESPESRPT-----MQTVCQ 669 (673)
Q Consensus 637 ~~~~~~~~~l~~li~~cl~~dp~~Rps-----~~~v~~ 669 (673)
..+.++.+++.+||+.||++|++ ++|+++
T Consensus 416 ----~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~ 449 (689)
T 3v5w_A 416 ----SFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE 449 (689)
T ss_dssp ----TSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTT
T ss_pred ----cCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhc
Confidence 23456889999999999999998 677653
No 20
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=100.00 E-value=4.8e-45 Score=375.22 Aligned_cols=280 Identities=33% Similarity=0.590 Sum_probs=229.9
Q ss_pred CcccHHHHHHHhcCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeee
Q 005864 390 GKIVYEEIIRATKNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGF 469 (673)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~ 469 (673)
..+++.++....++|++.+.||+|+||+||+|+..+|+.||||++....... ....+.+|++++..++||||++++++
T Consensus 18 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~e~~~l~~l~h~~iv~~~~~ 95 (326)
T 3uim_A 18 KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQG--GELQFQTEVEMISMAVHRNLLRLRGF 95 (326)
T ss_dssp EECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-------CCCHHHHHHHGGGTCCCTTBCCCCEE
T ss_pred ceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCch--HHHHHHHHHHHHHhccCCCccceEEE
Confidence 3567889999999999999999999999999998889999999987643221 23368899999999999999999999
Q ss_pred eecCCeeeEEEecccCCChHHHHhcCC-CCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEE
Q 005864 470 CSHPRHSFLVYECLERGSLAEILSNDG-SIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARV 548 (673)
Q Consensus 470 ~~~~~~~~lv~e~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl 548 (673)
+..++..++||||+++|+|.+++.... ....+++..+..++.|++.||+|||+.+.++|+||||||+||+++.++.+||
T Consensus 96 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl 175 (326)
T 3uim_A 96 CMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVV 175 (326)
T ss_dssp ECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEE
T ss_pred EecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEe
Confidence 999999999999999999999998754 2345899999999999999999999987678999999999999999999999
Q ss_pred ecccceeecCCCCCC-ceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccc--------
Q 005864 549 SDFGIAKFLKPGSSN-WTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSN-------- 619 (673)
Q Consensus 549 ~Dfg~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~-------- 619 (673)
+|||++......... .....||+.|+|||.+.+..++.++||||||+++|||++|+.||+...........
T Consensus 176 ~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~ 255 (326)
T 3uim_A 176 GDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGL 255 (326)
T ss_dssp CCCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTT
T ss_pred ccCccccccCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHH
Confidence 999999877543332 33456899999999999889999999999999999999999999743322111100
Q ss_pred -cccccccccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhhC
Q 005864 620 -MNLSLNEILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLCK 673 (673)
Q Consensus 620 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~~ 673 (673)
.........+..... ......+..+.+++.+||+.||++|||++||++.|++
T Consensus 256 ~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~ 308 (326)
T 3uim_A 256 LKEKKLEALVDVDLQG--NYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEG 308 (326)
T ss_dssp TSSCCSTTSSCTTCTT--SCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHT
T ss_pred hhchhhhhhcChhhcc--ccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcC
Confidence 112223333333332 3446677889999999999999999999999999963
No 21
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=100.00 E-value=6.1e-45 Score=370.40 Aligned_cols=264 Identities=29% Similarity=0.434 Sum_probs=205.5
Q ss_pred HHHHHHHhcCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecC
Q 005864 394 YEEIIRATKNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHP 473 (673)
Q Consensus 394 ~~~~~~~~~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~ 473 (673)
..++.....+|++.+.||+|+||+||+|+. .|+.||||++..... .....+.+.+|++++++++||||+++++++.++
T Consensus 29 ~~~~~i~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~ 106 (309)
T 3p86_A 29 GDDMDIPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDF-HAERVNEFLREVAIMKRLRHPNIVLFMGAVTQP 106 (309)
T ss_dssp ---CBCCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCC-SHHHHHHHHHHHHHHHHCCCTTBCCEEEEECST
T ss_pred cccccCChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCC-CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEEC
Confidence 334444467899999999999999999987 688999999876533 233467899999999999999999999999999
Q ss_pred CeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCC--eEEecCCCCCeEeCCCCceEEecc
Q 005864 474 RHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPP--IVHRDISSKNVLLSSEYEARVSDF 551 (673)
Q Consensus 474 ~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~dlk~~Nill~~~~~~kl~Df 551 (673)
+..++||||+++|+|.+++...+....+++..+..++.|++.||+|||+. + |+||||||+||+++.++.+||+||
T Consensus 107 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~~~ivH~Dikp~NIll~~~~~~kL~Df 183 (309)
T 3p86_A 107 PNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR---NPPIVHRNLKSPNLLVDKKYTVKVCDF 183 (309)
T ss_dssp TCCEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTS---SSCCCCTTCCGGGEEECTTCCEEECCC
T ss_pred CceEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcC---CCCEECCCCChhhEEEeCCCcEEECCC
Confidence 99999999999999999998765444589999999999999999999999 8 999999999999999999999999
Q ss_pred cceeecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCC
Q 005864 552 GIAKFLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPR 631 (673)
Q Consensus 552 g~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (673)
|+++.............||+.|+|||.+.+..++.++||||||+++|||++|+.||......+.... .......
T Consensus 184 g~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~~~~~------~~~~~~~ 257 (309)
T 3p86_A 184 GLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAA------VGFKCKR 257 (309)
T ss_dssp C-----------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHH------HHHSCCC
T ss_pred CCCccccccccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHH------HHhcCCC
Confidence 9998655443344556799999999999999999999999999999999999999974332111000 0001112
Q ss_pred CCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 632 LPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 632 ~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
...+. ..+.++.+++.+||+.||++|||++|+++.|+
T Consensus 258 ~~~~~----~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~ 294 (309)
T 3p86_A 258 LEIPR----NLNPQVAAIIEGCWTNEPWKRPSFATIMDLLR 294 (309)
T ss_dssp CCCCT----TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CCCCc----cCCHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence 22222 22345889999999999999999999999886
No 22
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=100.00 E-value=2.9e-44 Score=368.37 Aligned_cols=271 Identities=33% Similarity=0.479 Sum_probs=222.1
Q ss_pred HHHHHHHhcCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecC
Q 005864 394 YEEIIRATKNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHP 473 (673)
Q Consensus 394 ~~~~~~~~~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~ 473 (673)
+.++..++++|+..+.||+|+||+||+|.+.+|+.||||++.... ....+.+.+|+.+++.++||||+++++++.++
T Consensus 31 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~ 107 (321)
T 2qkw_B 31 LVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPES---SQGIEEFETEIETLSFCRHPHLVSLIGFCDER 107 (321)
T ss_dssp CSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCC---SSHHHHHHHHHHGGGSCCCTTBCCEEEECCCT
T ss_pred HHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccC---hHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCC
Confidence 334455678999999999999999999998889999999886542 23467899999999999999999999999999
Q ss_pred CeeeEEEecccCCChHHHHhcCCC-CccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEeccc
Q 005864 474 RHSFLVYECLERGSLAEILSNDGS-IKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFG 552 (673)
Q Consensus 474 ~~~~lv~e~~~~gsL~~~l~~~~~-~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg 552 (673)
+..++||||+++|+|.+++..... ...+++..+..++.|+++||+|||++ +++||||||+||+++.++.+||+|||
T Consensus 108 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg 184 (321)
T 2qkw_B 108 NEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTR---AIIHRDVKSINILLDENFVPKITDFG 184 (321)
T ss_dssp TCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCSTTEEECTTCCEEECCCT
T ss_pred CeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCC---CeecCCCCHHHEEECCCCCEEEeecc
Confidence 999999999999999999976532 23589999999999999999999999 99999999999999999999999999
Q ss_pred ceeecCCCCC--CceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCccccccccccc-------ccccc
Q 005864 553 IAKFLKPGSS--NWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSS-------NMNLS 623 (673)
Q Consensus 553 ~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~-------~~~~~ 623 (673)
++........ ......||+.|+|||.+.+..++.++||||||+++|||++|+.||......+.... .....
T Consensus 185 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (321)
T 2qkw_B 185 ISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQ 264 (321)
T ss_dssp TCEECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTC
T ss_pred cccccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhcccccc
Confidence 9987543222 22345689999999999988999999999999999999999999874332111100 01112
Q ss_pred cccccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 624 LNEILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
....+++.... ......+..+.+++.+||+.||++|||++|+++.|+
T Consensus 265 ~~~~~~~~~~~--~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~ 311 (321)
T 2qkw_B 265 LEQIVDPNLAD--KIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLE 311 (321)
T ss_dssp CCSSSSSSCTT--CSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred HHHhcChhhcc--ccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHH
Confidence 23333443332 234567788999999999999999999999999986
No 23
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=100.00 E-value=3.3e-44 Score=363.14 Aligned_cols=250 Identities=25% Similarity=0.376 Sum_probs=209.4
Q ss_pred hcCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 479 (673)
.++|++.+.||+|+||+||+|.. .+|+.||||++...... ..+.+.+|+.+++.++||||+++++++..++..++|
T Consensus 19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 95 (297)
T 3fxz_A 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQP---KKELIINEILVMRENKNPNIVNYLDSYLVGDELWVV 95 (297)
T ss_dssp GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCS---CHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeeccccc---HHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEE
Confidence 36799999999999999999976 57999999998654322 356788999999999999999999999999999999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCC
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKP 559 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~ 559 (673)
|||+++|+|.+++... .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++.....
T Consensus 96 ~e~~~~~~L~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 168 (297)
T 3fxz_A 96 MEYLAGGSLTDVVTET----CMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITP 168 (297)
T ss_dssp EECCTTCBHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCS
T ss_pred EECCCCCCHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEECCCCCEEEeeCCCceecCC
Confidence 9999999999999864 378899999999999999999999 999999999999999999999999999988766
Q ss_pred CCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcch
Q 005864 560 GSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRNI 639 (673)
Q Consensus 560 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (673)
.........||+.|+|||.+.+..++.++||||+|+++|||++|+.||........... ......+.... .
T Consensus 169 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~-----~~~~~~~~~~~----~ 239 (297)
T 3fxz_A 169 EQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYL-----IATNGTPELQN----P 239 (297)
T ss_dssp TTCCBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHH-----HHHHCSCCCSC----G
T ss_pred cccccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHH-----HHhCCCCCCCC----c
Confidence 55555667899999999999999999999999999999999999999974332211000 00001111111 1
Q ss_pred HHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 640 QDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 640 ~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
...+..+.+++.+||+.||++|||++|+++
T Consensus 240 ~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 269 (297)
T 3fxz_A 240 EKLSAIFRDFLNRCLEMDVEKRGSAKELLQ 269 (297)
T ss_dssp GGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred cccCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 233456889999999999999999999975
No 24
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=100.00 E-value=1e-43 Score=364.67 Aligned_cols=250 Identities=21% Similarity=0.255 Sum_probs=210.7
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
++|++.+.||+|+||+||+|+.. +|+.||+|+++............+.+|+.+++.++||||+++++++.+.+..++||
T Consensus 5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~ 84 (337)
T 1o6l_A 5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM 84 (337)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEE
Confidence 57889999999999999999775 69999999997654434445678899999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
||+++|+|.+++... ..+++..+..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 85 E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~ 158 (337)
T 1o6l_A 85 EYANGGELFFHLSRE---RVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISD 158 (337)
T ss_dssp ECCTTCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCT
T ss_pred eCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCCHHHEEECCCCCEEEeeccchhhcccC
Confidence 999999999999765 3488899999999999999999999 9999999999999999999999999999865444
Q ss_pred CCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcchH
Q 005864 561 SSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRNIQ 640 (673)
Q Consensus 561 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (673)
........||+.|+|||++.+..++.++||||+||++|||++|+.||...... .....+.......+..
T Consensus 159 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~--------~~~~~i~~~~~~~p~~--- 227 (337)
T 1o6l_A 159 GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE--------RLFELILMEEIRFPRT--- 227 (337)
T ss_dssp TCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHH--------HHHHHHHHCCCCCCTT---
T ss_pred CCcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCHH--------HHHHHHHcCCCCCCCC---
Confidence 44455678999999999999999999999999999999999999999743221 1112222223333322
Q ss_pred HHHHHHHHHHHHcccCCCCCCC-----CHHHHHH
Q 005864 641 DKLISILEVALLCLEESPESRP-----TMQTVCQ 669 (673)
Q Consensus 641 ~~~~~l~~li~~cl~~dp~~Rp-----s~~~v~~ 669 (673)
.+.++.+++.+||+.||++|| +++|+++
T Consensus 228 -~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~ 260 (337)
T 1o6l_A 228 -LSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME 260 (337)
T ss_dssp -SCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred -CCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHc
Confidence 234588999999999999999 8999875
No 25
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=100.00 E-value=1.2e-43 Score=363.10 Aligned_cols=261 Identities=25% Similarity=0.356 Sum_probs=215.0
Q ss_pred CcccHHHHHHHhcC----------CCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhcc
Q 005864 390 GKIVYEEIIRATKN----------FDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEI 458 (673)
Q Consensus 390 ~~~~~~~~~~~~~~----------~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l 458 (673)
+.++++++..+++. |+..+.||+|+||.||+|+.. +|+.||||++..... ...+.+.+|+.+++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~---~~~~~~~~E~~~l~~l 99 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQ---QRRELLFNEVVIMRDY 99 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC---CSHHHHHHHHHHHTTC
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccch---hHHHHHHHHHHHHHhC
Confidence 45778888887764 677789999999999999876 799999999865432 2356788999999999
Q ss_pred CCCcccceeeeeecCCeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCe
Q 005864 459 RHRNIVKFYGFCSHPRHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNV 538 (673)
Q Consensus 459 ~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Ni 538 (673)
+||||+++++++..++..++||||+++|+|.+++... .+++..+..++.|+++||+|||+. +|+||||||+||
T Consensus 100 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~----~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NI 172 (321)
T 2c30_A 100 QHFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQV----RLNEEQIATVCEAVLQALAYLHAQ---GVIHRDIKSDSI 172 (321)
T ss_dssp CCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGE
T ss_pred CCCCcceEEEEEEECCEEEEEEecCCCCCHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHE
Confidence 9999999999999999999999999999999998753 489999999999999999999999 999999999999
Q ss_pred EeCCCCceEEecccceeecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCccccccccccc
Q 005864 539 LLSSEYEARVSDFGIAKFLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSS 618 (673)
Q Consensus 539 ll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~ 618 (673)
+++.++.+||+|||++..............||+.|+|||++.+..++.++||||||+++|||++|+.||......+..
T Consensus 173 ll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~~~~-- 250 (321)
T 2c30_A 173 LLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAM-- 250 (321)
T ss_dssp EECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHH--
T ss_pred EECCCCcEEEeeeeeeeecccCccccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHH--
Confidence 999999999999999988765544455678999999999999999999999999999999999999998743221110
Q ss_pred ccccccccccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 619 NMNLSLNEILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
........+... .....+..+.+++.+||+.||++|||++|+++
T Consensus 251 ---~~~~~~~~~~~~----~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 294 (321)
T 2c30_A 251 ---KRLRDSPPPKLK----NSHKVSPVLRDFLERMLVRDPQERATAQELLD 294 (321)
T ss_dssp ---HHHHHSSCCCCT----TGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred ---HHHhcCCCCCcC----ccccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 011111111111 11223456889999999999999999999986
No 26
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=100.00 E-value=7.7e-44 Score=364.65 Aligned_cols=249 Identities=24% Similarity=0.390 Sum_probs=209.0
Q ss_pred hcCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 479 (673)
.++|++.+.||+|+||.||+|.+ .+|+.||||++..... .....+.+.+|+.+++.++||||+++++++..++..++|
T Consensus 14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv 92 (328)
T 3fe3_A 14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQL-NPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLI 92 (328)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGS-CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcC-CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEE
Confidence 35799999999999999999977 5799999999876533 233467788999999999999999999999999999999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCC
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKP 559 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~ 559 (673)
|||+++|+|.+++...+ .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++.....
T Consensus 93 ~e~~~~~~L~~~l~~~~---~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~ 166 (328)
T 3fe3_A 93 MEYASGGEVFDYLVAHG---RMKEKEARSKFRQIVSAVQYCHQK---RIVHRDLKAENLLLDADMNIKIADFGFSNEFTV 166 (328)
T ss_dssp ECCCTTCBHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSTTCCGGGSS
T ss_pred EECCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCCHHHEEEcCCCCEEEeeccCceecCC
Confidence 99999999999997653 488899999999999999999999 999999999999999999999999999986654
Q ss_pred CCCCceecccccccccccccccCCcC-cchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcc
Q 005864 560 GSSNWTEFAGTFGYVAPELAYTMKVT-EKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRN 638 (673)
Q Consensus 560 ~~~~~~~~~~~~~y~aPE~~~~~~~~-~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (673)
. .......||+.|+|||.+.+..++ .++||||+||++|||++|+.||+..... .....+.......+..
T Consensus 167 ~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~--------~~~~~i~~~~~~~p~~- 236 (328)
T 3fe3_A 167 G-GKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLK--------ELRERVLRGKYRIPFY- 236 (328)
T ss_dssp S-CGGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHH--------HHHHHHHHCCCCCCTT-
T ss_pred C-CccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHH--------HHHHHHHhCCCCCCCC-
Confidence 3 234556799999999999888765 7999999999999999999999743221 1122223333333322
Q ss_pred hHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 639 IQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 639 ~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.+.++.+++.+||+.||.+|||++|+++
T Consensus 237 ---~s~~~~~li~~~L~~dP~~R~t~~eil~ 264 (328)
T 3fe3_A 237 ---MSTDCENLLKRFLVLNPIKRGTLEQIMK 264 (328)
T ss_dssp ---SCHHHHHHHHHHCCSSTTTSCCHHHHTT
T ss_pred ---CCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 2345889999999999999999999975
No 27
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=100.00 E-value=8.2e-43 Score=355.39 Aligned_cols=276 Identities=31% Similarity=0.511 Sum_probs=225.7
Q ss_pred CcccHHHHHHHhcCCCcc------ceeccCCcEEEEEEEeCCCCEEEEEeeccchh-hhhHHHHHHHHHHHHHhccCCCc
Q 005864 390 GKIVYEEIIRATKNFDAE------QCIGIGGQASVYRGELPSGEVVAVKKFHSLLL-SEISVQREFLNEIKALTEIRHRN 462 (673)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~------~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~~e~~~l~~l~h~n 462 (673)
..+++.++..+++.|+.. +.||+|+||+||+|.. +++.||||++..... ......+.+.+|+.++++++|||
T Consensus 13 ~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ 91 (307)
T 2nru_A 13 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHEN 91 (307)
T ss_dssp EECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTT
T ss_pred CcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCC
Confidence 457889999999998877 8999999999999987 689999999875432 22345678999999999999999
Q ss_pred ccceeeeeecCCeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCC
Q 005864 463 IVKFYGFCSHPRHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSS 542 (673)
Q Consensus 463 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~ 542 (673)
|+++++++.+++..++||||+++|+|.+++........+++..+..++.|++.||+|||+. +++||||||+||++++
T Consensus 92 i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nili~~ 168 (307)
T 2nru_A 92 LVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDE 168 (307)
T ss_dssp BCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECT
T ss_pred eEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecCCCCHHHEEEcC
Confidence 9999999999999999999999999999998654445689999999999999999999999 9999999999999999
Q ss_pred CCceEEecccceeecCCCCCC--ceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCccccccccccc--
Q 005864 543 EYEARVSDFGIAKFLKPGSSN--WTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSS-- 618 (673)
Q Consensus 543 ~~~~kl~Dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~-- 618 (673)
++.+||+|||++......... .....|++.|+|||.+.+ .++.++||||||+++|||++|+.||+..........
T Consensus 169 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~ 247 (307)
T 2nru_A 169 AFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIK 247 (307)
T ss_dssp TCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTHHH
T ss_pred CCcEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcchHHHHHHH
Confidence 999999999999876543222 233568999999998765 589999999999999999999999975432211100
Q ss_pred ----ccccccccccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhhC
Q 005864 619 ----NMNLSLNEILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLCK 673 (673)
Q Consensus 619 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~~ 673 (673)
.......+.+++.+.. .....+..+.+++.+||+.||.+|||++++++.|++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~ 303 (307)
T 2nru_A 248 EEIEDEEKTIEDYIDKKMND---ADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQE 303 (307)
T ss_dssp HHHHTTSCCHHHHSCSSCSC---CCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHH
T ss_pred HHhhhhhhhhhhhccccccc---cchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHH
Confidence 0011122333444332 334667789999999999999999999999999863
No 28
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=100.00 E-value=5.2e-43 Score=357.26 Aligned_cols=254 Identities=25% Similarity=0.436 Sum_probs=206.7
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
++|.+.+.||+|+||+||+|.+. +|+.||+|++... .....+.+.+|++++.+++||||+++++++.+++..++||
T Consensus 10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~---~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 86 (310)
T 3s95_A 10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRF---DEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFIT 86 (310)
T ss_dssp GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCC---CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccC---CHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEE
Confidence 56888999999999999999775 6999999988543 3345678999999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
||+++|+|.++++... ..+++.++..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||++......
T Consensus 87 e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 161 (310)
T 3s95_A 87 EYIKGGTLRGIIKSMD--SQYPWSQRVSFAKDIASGMAYLHSM---NIIHRDLNSHNCLVRENKNVVVADFGLARLMVDE 161 (310)
T ss_dssp ECCTTCBHHHHHHHCC--TTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEECTTSCEEECCCTTCEECC--
T ss_pred EecCCCcHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCcCeEEECCCCCEEEeecccceecccc
Confidence 9999999999998753 4589999999999999999999999 9999999999999999999999999999876443
Q ss_pred CCCc--------------eecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCccccccccccccccccccc
Q 005864 561 SSNW--------------TEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNE 626 (673)
Q Consensus 561 ~~~~--------------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~ 626 (673)
.... ....||+.|+|||++.+..++.++||||||+++|||++|..||.......... ......
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~---~~~~~~ 238 (310)
T 3s95_A 162 KTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDF---GLNVRG 238 (310)
T ss_dssp ------------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTS---SBCHHH
T ss_pred cccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHH---hhhhhc
Confidence 2211 14578999999999999999999999999999999999999986432211100 001111
Q ss_pred ccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 627 ILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
..+...+ ...+..+.+++.+||+.||++|||++|+++.|+
T Consensus 239 ~~~~~~~------~~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~ 278 (310)
T 3s95_A 239 FLDRYCP------PNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLE 278 (310)
T ss_dssp HHHHTCC------TTCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred cccccCC------CCCCHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence 1111111 011234889999999999999999999999886
No 29
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=100.00 E-value=1.7e-43 Score=366.27 Aligned_cols=254 Identities=21% Similarity=0.291 Sum_probs=211.5
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhh---HHHHHHHHHHHHHhccCCCcccceeeeeecCCee
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEI---SVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHS 476 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 476 (673)
.+.|++.+.||+|+||+||+|... +|+.||+|.++....... ...+.+.+|+.++..++||||+++++++.+++..
T Consensus 11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~ 90 (361)
T 2yab_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV 90 (361)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence 357899999999999999999775 699999999876533211 1356789999999999999999999999999999
Q ss_pred eEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCC----ceEEeccc
Q 005864 477 FLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEY----EARVSDFG 552 (673)
Q Consensus 477 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~----~~kl~Dfg 552 (673)
++||||+++|+|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++ .+||+|||
T Consensus 91 ~lv~e~~~gg~L~~~l~~~---~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~~~vkl~DFG 164 (361)
T 2yab_A 91 VLILELVSGGELFDFLAQK---ESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDFG 164 (361)
T ss_dssp EEEEECCCSCBHHHHHTTC---SCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECCCS
T ss_pred EEEEEcCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeCCCCCccCEEEEecC
Confidence 9999999999999999764 3589999999999999999999999 999999999999998876 79999999
Q ss_pred ceeecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCC
Q 005864 553 IAKFLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRL 632 (673)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (673)
++....... ......||+.|+|||++.+..++.++||||+||++|+|++|..||..... ......+.....
T Consensus 165 ~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~--------~~~~~~i~~~~~ 235 (361)
T 2yab_A 165 LAHEIEDGV-EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK--------QETLANITAVSY 235 (361)
T ss_dssp SCEECCTTC-CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH--------HHHHHHHHTTCC
T ss_pred CceEcCCCC-ccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCH--------HHHHHHHHhcCC
Confidence 998875432 33456799999999999998999999999999999999999999974321 112223333333
Q ss_pred CCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 633 PLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 633 ~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
..+...+...+..+.+++.+||..||++|||+.|+++
T Consensus 236 ~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~ 272 (361)
T 2yab_A 236 DFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALR 272 (361)
T ss_dssp CCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred CCCchhccCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 3333333344567899999999999999999999985
No 30
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.5e-43 Score=400.32 Aligned_cols=326 Identities=34% Similarity=0.521 Sum_probs=287.9
Q ss_pred CCccccCCCcccCCC-CCCEEEeeCCccccCCCccccC--CCCCCEEEcccCccccccCccccCCCCCcEEEccCccccc
Q 005864 2 NHLSGAIPPSVGNFT-NLKGLYLYSNSLSGSVPGEIGN--LMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTG 78 (673)
Q Consensus 2 n~i~~~~p~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~--l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~ 78 (673)
|++++.+|..+.+++ +|++|+|++|.+++..|..+.. +++|++|++++|++++..|..|.++++|++|+|++|++++
T Consensus 353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 432 (768)
T 3rgz_A 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432 (768)
T ss_dssp SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC
Confidence 556666666666665 6666666666666666666655 6778888888888888888889999999999999999988
Q ss_pred ccccccCCCCCccEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccccCCccccC
Q 005864 79 NISEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGN 158 (673)
Q Consensus 79 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~ 158 (673)
..+..|..+++|++|+|++|.+.+..+..+..+++|+.|++++|.+++..|..+..+++|++|++++|++++.+|..+..
T Consensus 433 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 512 (768)
T 3rgz_A 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc
Confidence 88888999999999999999998888888999999999999999999889999999999999999999999889999999
Q ss_pred CCCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCccc----------------------------------
Q 005864 159 LKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETL---------------------------------- 204 (673)
Q Consensus 159 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l---------------------------------- 204 (673)
+++|+.|+|++|++++.+|..+..+++|+.|++++|.+++.+|..+
T Consensus 513 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (768)
T 3rgz_A 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592 (768)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEE
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999998887766543
Q ss_pred ------------------------------------cccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCC
Q 005864 205 ------------------------------------GNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEI 248 (673)
Q Consensus 205 ------------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~ 248 (673)
..+++|+.|+|++|++++.+|..++.+++|+.|+|++|.+++.+
T Consensus 593 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 672 (768)
T 3rgz_A 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672 (768)
T ss_dssp EEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred ccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC
Confidence 33567899999999999999999999999999999999999999
Q ss_pred cccccCCCcccEEEecCccccccCccccccCCCccEEEccCccccCCCCCCcccccCccccccCCcCCCCCCCCCccccc
Q 005864 249 PPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLGLIPNSTGFQYDPIQALRGNRGLCGDVEGFQSCKA 328 (673)
Q Consensus 249 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~~~~~~~ 328 (673)
|..++++++|+.|+|++|+++|.+|..+..++.|++||+++|+++|.+|....+...+..++.||+++||.|.. .|..
T Consensus 673 p~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~--~C~~ 750 (768)
T 3rgz_A 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP--RCDP 750 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC--CCCS
T ss_pred ChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc--CCCC
Confidence 99999999999999999999999999999999999999999999999999999999899999999999998743 6755
Q ss_pred c
Q 005864 329 F 329 (673)
Q Consensus 329 ~ 329 (673)
.
T Consensus 751 ~ 751 (768)
T 3rgz_A 751 S 751 (768)
T ss_dssp C
T ss_pred C
Confidence 4
No 31
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=100.00 E-value=1.8e-43 Score=375.66 Aligned_cols=255 Identities=22% Similarity=0.294 Sum_probs=212.2
Q ss_pred HhcCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeE
Q 005864 400 ATKNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFL 478 (673)
Q Consensus 400 ~~~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 478 (673)
..++|++.+.||+|+||+||+|.. .+|+.||+|++...... ....+.+.+|+.+++.++||||+++++++.+++..++
T Consensus 9 ~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~-~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~l 87 (444)
T 3soa_A 9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLS-ARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYL 87 (444)
T ss_dssp HHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCH-HHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEE
T ss_pred ccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCC-HHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEE
Confidence 456799999999999999999966 47999999998765433 2346778999999999999999999999999999999
Q ss_pred EEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeC---CCCceEEeccccee
Q 005864 479 VYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLS---SEYEARVSDFGIAK 555 (673)
Q Consensus 479 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~---~~~~~kl~Dfg~~~ 555 (673)
||||+++|+|.+.+...+ .+++..+..++.||+.||+|||++ +|+||||||+||+++ .++.+||+|||++.
T Consensus 88 v~E~~~gg~L~~~i~~~~---~~~e~~~~~i~~qil~aL~~lH~~---givHrDlKp~NIll~~~~~~~~vkL~DFG~a~ 161 (444)
T 3soa_A 88 IFDLVTGGELFEDIVARE---YYSEADASHCIQQILEAVLHCHQM---GVVHRNLKPENLLLASKLKGAAVKLADFGLAI 161 (444)
T ss_dssp EECCCBCCBHHHHHHHCS---CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSSTTEEESBSSTTCCEEECCCSSCB
T ss_pred EEEeCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEeccCCCCcEEEccCceeE
Confidence 999999999999998753 488999999999999999999999 999999999999998 46789999999998
Q ss_pred ecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCC
Q 005864 556 FLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLP 635 (673)
Q Consensus 556 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (673)
.............||+.|+|||++.+..++.++||||+||++|+|++|..||..... ......+.......+
T Consensus 162 ~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~--------~~~~~~i~~~~~~~~ 233 (444)
T 3soa_A 162 EVEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQ--------HRLYQQIKAGAYDFP 233 (444)
T ss_dssp CCCTTCCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSH--------HHHHHHHHHTCCCCC
T ss_pred EecCCCceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccH--------HHHHHHHHhCCCCCC
Confidence 776555555667899999999999998999999999999999999999999864321 111222233333333
Q ss_pred CcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 636 SRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 636 ~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
...+...+.++.+++.+||+.||++|||+.|+++
T Consensus 234 ~~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~ 267 (444)
T 3soa_A 234 SPEWDTVTPEAKDLINKMLTINPSKRITAAEALK 267 (444)
T ss_dssp TTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred ccccccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 3333344567899999999999999999999986
No 32
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=100.00 E-value=3.1e-43 Score=367.02 Aligned_cols=254 Identities=22% Similarity=0.370 Sum_probs=208.4
Q ss_pred cCCCccceeccCCcEEEEEEEe--------CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhcc-CCCcccceeeeeec
Q 005864 402 KNFDAEQCIGIGGQASVYRGEL--------PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEI-RHRNIVKFYGFCSH 472 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~--------~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~ 472 (673)
++|++.+.||+|+||+||+|++ .++..||||+++... .....+.+.+|+++++++ +||||+++++++.+
T Consensus 81 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~ 158 (370)
T 2psq_A 81 DKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA--TEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ 158 (370)
T ss_dssp GGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTC--BHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECS
T ss_pred HHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCc--CHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEcc
Confidence 5788999999999999999975 245679999987542 334567899999999999 89999999999999
Q ss_pred CCeeeEEEecccCCChHHHHhcCCC-------------CccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeE
Q 005864 473 PRHSFLVYECLERGSLAEILSNDGS-------------IKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVL 539 (673)
Q Consensus 473 ~~~~~lv~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nil 539 (673)
++..++||||+++|+|.+++...+. ...+++..+..++.||+.||+|||++ +|+||||||+||+
T Consensus 159 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIl 235 (370)
T 2psq_A 159 DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVL 235 (370)
T ss_dssp SSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEE
T ss_pred CCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeccccchhhEE
Confidence 9999999999999999999986542 23478999999999999999999999 9999999999999
Q ss_pred eCCCCceEEecccceeecCCCCC--CceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCccccccccc
Q 005864 540 LSSEYEARVSDFGIAKFLKPGSS--NWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSS 616 (673)
Q Consensus 540 l~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~ 616 (673)
++.++.+||+|||+++....... ......+++.|+|||++.+..++.++|||||||++|||++ |+.||......+
T Consensus 236 l~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~~-- 313 (370)
T 2psq_A 236 VTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE-- 313 (370)
T ss_dssp ECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG--
T ss_pred ECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHHH--
Confidence 99999999999999987654332 2233456789999999999999999999999999999999 999987432211
Q ss_pred ccccccccccccCC-CCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 617 SSNMNLSLNEILDP-RLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 617 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
....+... ....+. ..+.++.+++.+||+.||++|||+.|+++.|+
T Consensus 314 ------~~~~~~~~~~~~~~~----~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~ 360 (370)
T 2psq_A 314 ------LFKLLKEGHRMDKPA----NCTNELYMMMRDCWHAVPSQRPTFKQLVEDLD 360 (370)
T ss_dssp ------HHHHHHTTCCCCCCT----TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred ------HHHHHhcCCCCCCCC----CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 11111111 111121 23345889999999999999999999999986
No 33
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.4e-43 Score=362.19 Aligned_cols=251 Identities=21% Similarity=0.266 Sum_probs=210.4
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 479 (673)
.++|++.+.||+|+||+||+|... +|+.||+|.+.... .....+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~----~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv 79 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG----TDQVLVKKEISILNIARHRNILHLHESFESMEELVMI 79 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT----HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEE
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc----ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEE
Confidence 357899999999999999999775 68899999986432 2356788999999999999999999999999999999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCC--CCceEEecccceeec
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSS--EYEARVSDFGIAKFL 557 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~--~~~~kl~Dfg~~~~~ 557 (673)
|||+++|+|.+++.... ..+++..+..++.|++.||+|||+. +|+||||||+||+++. ++.+||+|||++...
T Consensus 80 ~e~~~g~~L~~~l~~~~--~~~~~~~~~~i~~qi~~al~~lH~~---givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~ 154 (321)
T 1tki_A 80 FEFISGLDIFERINTSA--FELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQL 154 (321)
T ss_dssp ECCCCCCBHHHHHTSSS--CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCTTCEEC
T ss_pred EEeCCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEccCCCCCEEEEECCCCeEC
Confidence 99999999999997653 4589999999999999999999999 9999999999999987 789999999999887
Q ss_pred CCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCc
Q 005864 558 KPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSR 637 (673)
Q Consensus 558 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (673)
... .......||+.|+|||.+.+..++.++||||+|+++|||++|..||..... ......+.......+..
T Consensus 155 ~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~--------~~~~~~i~~~~~~~~~~ 225 (321)
T 1tki_A 155 KPG-DNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETN--------QQIIENIMNAEYTFDEE 225 (321)
T ss_dssp CTT-CEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSH--------HHHHHHHHHTCCCCCHH
T ss_pred CCC-CccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCH--------HHHHHHHHcCCCCCChh
Confidence 543 334556789999999999988899999999999999999999999974321 11222333333333322
Q ss_pred chHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 638 NIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 638 ~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.+...+.++.+++.+||+.||++|||+.|+++
T Consensus 226 ~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~ 257 (321)
T 1tki_A 226 AFKEISIEAMDFVDRLLVKERKSRMTASEALQ 257 (321)
T ss_dssp HHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred hhccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 33344567899999999999999999999986
No 34
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=9.9e-44 Score=365.74 Aligned_cols=249 Identities=25% Similarity=0.381 Sum_probs=199.5
Q ss_pred hcCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 479 (673)
.++|++.+.||+|+||+||+|++ .+|+.||||++...... ...+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 9 ~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~--~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~~~lv 86 (347)
T 3zgw_A 9 LKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLG--SDLPRIKTEIEALKNLRHQHICQLYHVLETANKIFMV 86 (347)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC-----CCHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccc--hHHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEE
Confidence 46799999999999999999976 57999999998765332 2345688999999999999999999999999999999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCC
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKP 559 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~ 559 (673)
|||+++|+|.+++...+ .+++..+..++.|++.||+|||+. +|+||||||+||++++++.+||+|||++.....
T Consensus 87 ~E~~~gg~L~~~l~~~~---~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~kL~DFG~a~~~~~ 160 (347)
T 3zgw_A 87 LEYCPGGELFDYIISQD---RLSEEETRVVFRQIVSAVAYVHSQ---GYAHRDLKPENLLFDEYHKLKLIDFGLCAKPKG 160 (347)
T ss_dssp EECCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBC---
T ss_pred EeCCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCccHHHEEEcCCCCEEEEeccCcccccC
Confidence 99999999999997653 488999999999999999999999 999999999999999999999999999986543
Q ss_pred CCC-CceecccccccccccccccCCc-CcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCc
Q 005864 560 GSS-NWTEFAGTFGYVAPELAYTMKV-TEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSR 637 (673)
Q Consensus 560 ~~~-~~~~~~~~~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (673)
... ......||+.|+|||.+.+..+ +.++||||+||++|||++|..||+..... .....+.......+..
T Consensus 161 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~--------~~~~~i~~~~~~~p~~ 232 (347)
T 3zgw_A 161 NKDYHLQTCCGSLAYAAPELIQGKSYLGSEADVWSMGILLYVLMCGFLPFDDDNVM--------ALYKKIMRGKYDVPKW 232 (347)
T ss_dssp -----------CGGGCCHHHHTTC---CCHHHHHHHHHHHHHHHHSSCSSCCSSHH--------HHHHHHHHTCCCCCTT
T ss_pred CCCccccccCCccCccCHHHHcCCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHH--------HHHHHHHcCCCCCCCC
Confidence 322 3345679999999999988775 88999999999999999999999743221 1222233333333322
Q ss_pred chHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 638 NIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 638 ~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.+.++.+++.+||+.||++|||++|+++
T Consensus 233 ----~s~~~~~li~~~L~~dP~~Rps~~eil~ 260 (347)
T 3zgw_A 233 ----LSPSSILLLQQMLQVDPKKRISMKNLLN 260 (347)
T ss_dssp ----CCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ----CCHHHHHHHHHHcccCHhHCcCHHHHhc
Confidence 2345788999999999999999999985
No 35
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=100.00 E-value=9.6e-44 Score=367.33 Aligned_cols=251 Identities=22% Similarity=0.313 Sum_probs=206.3
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhcc-CCCcccceeeeeecCCeeeE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEI-RHRNIVKFYGFCSHPRHSFL 478 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~l 478 (673)
.++|++.+.||+|+||+||+|+.. +|+.||||+++..........+.+.+|..++..+ +||||+++++++.+++..++
T Consensus 22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 101 (353)
T 3txo_A 22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFF 101 (353)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEE
Confidence 468999999999999999999775 6899999999876444445567788999999998 69999999999999999999
Q ss_pred EEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecC
Q 005864 479 VYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLK 558 (673)
Q Consensus 479 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~ 558 (673)
||||+++|+|.+++...+ .+++..+..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 102 v~E~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NILl~~~g~ikL~DFG~a~~~~ 175 (353)
T 3txo_A 102 VMEFVNGGDLMFHIQKSR---RFDEARARFYAAEIISALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMCKEGI 175 (353)
T ss_dssp EEECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSC
T ss_pred EEeCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCCHHHEEECCCCCEEEccccceeecc
Confidence 999999999999998753 488999999999999999999999 99999999999999999999999999998654
Q ss_pred CCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcc
Q 005864 559 PGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRN 638 (673)
Q Consensus 559 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (673)
..........||+.|+|||++.+..++.++||||+||++|||++|+.||..... ......+.......+..
T Consensus 176 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~--------~~~~~~i~~~~~~~p~~- 246 (353)
T 3txo_A 176 CNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENE--------DDLFEAILNDEVVYPTW- 246 (353)
T ss_dssp C---------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSH--------HHHHHHHHHCCCCCCTT-
T ss_pred cCCccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCH--------HHHHHHHHcCCCCCCCC-
Confidence 444445567899999999999988999999999999999999999999974322 12223333334443332
Q ss_pred hHHHHHHHHHHHHHcccCCCCCCCCH------HHHHH
Q 005864 639 IQDKLISILEVALLCLEESPESRPTM------QTVCQ 669 (673)
Q Consensus 639 ~~~~~~~l~~li~~cl~~dp~~Rps~------~~v~~ 669 (673)
.+..+.+++.+||+.||++||++ +|+++
T Consensus 247 ---~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~ 280 (353)
T 3txo_A 247 ---LHEDATGILKSFMTKNPTMRLGSLTQGGEHAILR 280 (353)
T ss_dssp ---SCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHT
T ss_pred ---CCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhh
Confidence 23458899999999999999998 66653
No 36
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-43 Score=359.93 Aligned_cols=248 Identities=21% Similarity=0.326 Sum_probs=205.9
Q ss_pred cCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
++|.+.+.||+|+||+||+|.+ .+|+.||+|++.............+.+|+.+++.++||||+++++++..++..++||
T Consensus 9 ~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 88 (336)
T 3h4j_B 9 GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVI 88 (336)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 5789999999999999999976 579999999987654444344567899999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
||+ +|+|.+++...+ .+++..+..++.|++.||+|||+. +|+||||||+||++++++.+||+|||++......
T Consensus 89 E~~-~g~l~~~l~~~~---~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~ 161 (336)
T 3h4j_B 89 EYA-GGELFDYIVEKK---RMTEDEGRRFFQQIICAIEYCHRH---KIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDG 161 (336)
T ss_dssp CCC-CEEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHH---TCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTS
T ss_pred ECC-CCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCchhhEEEcCCCCEEEEEeccceeccCC
Confidence 999 679999987653 488999999999999999999999 9999999999999999999999999999866443
Q ss_pred CCCceecccccccccccccccCCc-CcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcch
Q 005864 561 SSNWTEFAGTFGYVAPELAYTMKV-TEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRNI 639 (673)
Q Consensus 561 ~~~~~~~~~~~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (673)
. ......||+.|+|||.+.+..+ +.++||||+||++|||++|+.||+.... ......+.......+..
T Consensus 162 ~-~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~--------~~~~~~i~~~~~~~p~~-- 230 (336)
T 3h4j_B 162 N-FLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFI--------PNLFKKVNSCVYVMPDF-- 230 (336)
T ss_dssp B-TTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSS--------TTCBCCCCSSCCCCCTT--
T ss_pred c-ccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccH--------HHHHHHHHcCCCCCccc--
Confidence 2 3345679999999999988776 6899999999999999999999974321 11122222222222222
Q ss_pred HHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 640 QDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 640 ~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.+.++.+++.+||+.||.+|||++|+++
T Consensus 231 --~s~~~~~li~~~L~~dP~~Rpt~~eil~ 258 (336)
T 3h4j_B 231 --LSPGAQSLIRRMIVADPMQRITIQEIRR 258 (336)
T ss_dssp --SCHHHHHHHHTTSCSSGGGSCCHHHHTT
T ss_pred --CCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence 2345889999999999999999999975
No 37
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=100.00 E-value=6e-43 Score=358.62 Aligned_cols=252 Identities=26% Similarity=0.440 Sum_probs=204.7
Q ss_pred cCCCccceeccCCcEEEEEEEeC----CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeee
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP----SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSF 477 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 477 (673)
++|++.+.||+|+||+||+|.+. .+..||||+++... .....+.+.+|+.++++++||||+++++++.+++..+
T Consensus 49 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 126 (325)
T 3kul_A 49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGY--TERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAM 126 (325)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCE
T ss_pred hHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCC--CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccE
Confidence 56888899999999999999874 34569999987542 2334678999999999999999999999999999999
Q ss_pred EEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeec
Q 005864 478 LVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFL 557 (673)
Q Consensus 478 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~ 557 (673)
+||||+++|+|.++++... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 127 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~ 201 (325)
T 3kul_A 127 IVTEYMENGSLDTFLRTHD--GQFTIMQLVGMLRGVGAGMRYLSDL---GYVHRDLAARNVLVDSNLVCKVSDFGLSRVL 201 (325)
T ss_dssp EEEECCTTCBHHHHHHTTT--TCSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCSSCEEC
T ss_pred EEeeCCCCCcHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEECCCCCEEECCCCccccc
Confidence 9999999999999997653 4589999999999999999999999 9999999999999999999999999999987
Q ss_pred CCCCCCc---eecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccccccccccccCC-CC
Q 005864 558 KPGSSNW---TEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLSLNEILDP-RL 632 (673)
Q Consensus 558 ~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~ 632 (673)
....... ....+|+.|+|||++.+..++.++||||||+++|||++ |+.||......+. ...+... ..
T Consensus 202 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~--------~~~~~~~~~~ 273 (325)
T 3kul_A 202 EDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRDV--------ISSVEEGYRL 273 (325)
T ss_dssp C----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHH--------HHHHHTTCCC
T ss_pred ccCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHHH--------HHHHHcCCCC
Confidence 5433222 22345778999999998999999999999999999999 9999864322111 1111111 11
Q ss_pred CCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 633 PLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 633 ~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
+.+. ..+..+.+++.+||+.||++|||++|+++.|+
T Consensus 274 ~~~~----~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~ 309 (325)
T 3kul_A 274 PAPM----GCPHALHQLMLDCWHKDRAQRPRFSQIVSVLD 309 (325)
T ss_dssp CCCT----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CCCC----CcCHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence 2221 23346889999999999999999999999986
No 38
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=100.00 E-value=4e-43 Score=366.63 Aligned_cols=254 Identities=22% Similarity=0.319 Sum_probs=205.9
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhcc-CCCcccceeeeeecCCeeeE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEI-RHRNIVKFYGFCSHPRHSFL 478 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~l 478 (673)
.++|++.+.||+|+||+||+|+.+ +++.||+|++++.........+.+.+|..++.++ +||||+++++++.+++..++
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 130 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 130 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence 357899999999999999999875 5889999999876544444556788999999887 89999999999999999999
Q ss_pred EEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecC
Q 005864 479 VYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLK 558 (673)
Q Consensus 479 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~ 558 (673)
||||+++|+|.+++...+ .+++..+..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 131 V~E~~~gg~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFGla~~~~ 204 (396)
T 4dc2_A 131 VIEYVNGGDLMFHMQRQR---KLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGL 204 (396)
T ss_dssp EEECCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCC
T ss_pred EEEcCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEECCCCCEEEeecceeeecc
Confidence 999999999999998653 489999999999999999999999 99999999999999999999999999998644
Q ss_pred CCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccc-cccccccccCCCCCCCCc
Q 005864 559 PGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSN-MNLSLNEILDPRLPLPSR 637 (673)
Q Consensus 559 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 637 (673)
..........||+.|+|||++.+..++.++||||+||++|||++|+.||+.....+..... .......+.......+..
T Consensus 205 ~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~ 284 (396)
T 4dc2_A 205 RPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRS 284 (396)
T ss_dssp CTTCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCCCCCCTT
T ss_pred cCCCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhccccCCCCc
Confidence 4444556678999999999999999999999999999999999999999643221111111 111122233334443332
Q ss_pred chHHHHHHHHHHHHHcccCCCCCCCCH
Q 005864 638 NIQDKLISILEVALLCLEESPESRPTM 664 (673)
Q Consensus 638 ~~~~~~~~l~~li~~cl~~dp~~Rps~ 664 (673)
.+.++.+++.+||+.||++||++
T Consensus 285 ----~s~~~~~li~~lL~~dP~~R~~~ 307 (396)
T 4dc2_A 285 ----LSVKAASVLKSFLNKDPKERLGC 307 (396)
T ss_dssp ----SCHHHHHHHHHHTCSCTTTSTTC
T ss_pred ----CCHHHHHHHHHHhcCCHhHcCCC
Confidence 23458899999999999999985
No 39
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.2e-43 Score=358.67 Aligned_cols=257 Identities=26% Similarity=0.349 Sum_probs=206.6
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
++|++.+.||+|+||+||+|+.. +++.||+|.+...........+.+.+|+.++.+++||||+++++++.+++..++||
T Consensus 11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 90 (294)
T 4eqm_A 11 ERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVM 90 (294)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEEE
T ss_pred ccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEEE
Confidence 57899999999999999999764 68999999986655455556788999999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
||+++|+|.+++...+ .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++......
T Consensus 91 e~~~g~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 164 (294)
T 4eqm_A 91 EYIEGPTLSEYIESHG---PLSVDTAINFTNQILDGIKHAHDM---RIVHRDIKPQNILIDSNKTLKIFDFGIAKALSET 164 (294)
T ss_dssp ECCCSCBHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCSSSTTC---
T ss_pred eCCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEEeCCCccccccc
Confidence 9999999999998653 588999999999999999999999 9999999999999999999999999999865433
Q ss_pred CC-CceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCC-CCcc
Q 005864 561 SS-NWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPL-PSRN 638 (673)
Q Consensus 561 ~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 638 (673)
.. ......||+.|+|||.+.+..++.++||||+|+++|||++|+.||......... ...+....+. +...
T Consensus 165 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~--------~~~~~~~~~~~~~~~ 236 (294)
T 4eqm_A 165 SLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIA--------IKHIQDSVPNVTTDV 236 (294)
T ss_dssp ----------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHHH--------HHHHSSCCCCHHHHS
T ss_pred cccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHH--------HHHhhccCCCcchhc
Confidence 22 233456899999999999999999999999999999999999999743321110 0111111110 0011
Q ss_pred hHHHHHHHHHHHHHcccCCCCCCC-CHHHHHHHhh
Q 005864 639 IQDKLISILEVALLCLEESPESRP-TMQTVCQLLC 672 (673)
Q Consensus 639 ~~~~~~~l~~li~~cl~~dp~~Rp-s~~~v~~~L~ 672 (673)
....+..+.+++.+||+.||++|| +++++.+.|+
T Consensus 237 ~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~ 271 (294)
T 4eqm_A 237 RKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLS 271 (294)
T ss_dssp CTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHH
Confidence 122345688999999999999998 8999988875
No 40
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=100.00 E-value=1.4e-43 Score=367.24 Aligned_cols=257 Identities=21% Similarity=0.255 Sum_probs=209.8
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhh--hHHHHHHHHHHHHHhccCCCcccceeeeeecCCeee
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSE--ISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSF 477 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 477 (673)
.+.|++.+.||+|+||+||+|... +|+.||||++....... ....+.+.+|+.+++.++||||+++++++.+++..+
T Consensus 23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~ 102 (351)
T 3c0i_A 23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLY 102 (351)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence 356999999999999999999764 69999999986543221 113577899999999999999999999999999999
Q ss_pred EEEecccCCChHHHHhcCC-CCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCc---eEEecccc
Q 005864 478 LVYECLERGSLAEILSNDG-SIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYE---ARVSDFGI 553 (673)
Q Consensus 478 lv~e~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~---~kl~Dfg~ 553 (673)
+||||+++|+|.+++.... ....+++..+..++.||+.||+|||++ +|+||||||+||+++.++. +||+|||+
T Consensus 103 lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~ 179 (351)
T 3c0i_A 103 MVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDN---NIIHRDVKPHCVLLASKENSAPVKLGGFGV 179 (351)
T ss_dssp EEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECSSSTTCCEEECCCTT
T ss_pred EEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChHHeEEecCCCCCcEEEecCcc
Confidence 9999999999998886532 223588999999999999999999999 9999999999999987654 99999999
Q ss_pred eeecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCC
Q 005864 554 AKFLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLP 633 (673)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (673)
+..............||+.|+|||++.+..++.++||||+||++|||++|+.||..... .....+......
T Consensus 180 a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~---------~~~~~i~~~~~~ 250 (351)
T 3c0i_A 180 AIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTKE---------RLFEGIIKGKYK 250 (351)
T ss_dssp CEECCTTSCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSHH---------HHHHHHHHTCCC
T ss_pred eeEecCCCeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcHH---------HHHHHHHcCCCC
Confidence 99876554444556799999999999999999999999999999999999999974211 112222222333
Q ss_pred CCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 634 LPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 634 ~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.+...+...+.++.+++.+||+.||++|||+.|+++
T Consensus 251 ~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 286 (351)
T 3c0i_A 251 MNPRQWSHISESAKDLVRRMLMLDPAERITVYEALN 286 (351)
T ss_dssp CCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 222222334567899999999999999999999985
No 41
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.5e-42 Score=355.36 Aligned_cols=264 Identities=20% Similarity=0.286 Sum_probs=211.7
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCC--eeeE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPR--HSFL 478 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~--~~~l 478 (673)
++|.+.+.||+|+||+||+|... +|+.||||++...... ...+.+.+|++++++++||||+++++++.... ..++
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l 86 (319)
T 4euu_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFL--RPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVL 86 (319)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGG--SCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEE
T ss_pred CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEecccccc--chHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEE
Confidence 56889999999999999999775 5999999998754322 23567889999999999999999999997655 7799
Q ss_pred EEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEe----CCCCceEEecccce
Q 005864 479 VYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLL----SSEYEARVSDFGIA 554 (673)
Q Consensus 479 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill----~~~~~~kl~Dfg~~ 554 (673)
||||+++|+|.+++........+++..+..++.|++.||+|||+. +|+||||||+||++ +.++.+||+|||++
T Consensus 87 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a 163 (319)
T 4euu_A 87 IMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAA 163 (319)
T ss_dssp EEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEECTTSCEEEEECCCTTC
T ss_pred EEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEeccCCCCceEEEccCCCc
Confidence 999999999999998765444589999999999999999999999 99999999999999 77788999999999
Q ss_pred eecCCCCCCceecccccccccccccc--------cCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccc-----
Q 005864 555 KFLKPGSSNWTEFAGTFGYVAPELAY--------TMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMN----- 621 (673)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~y~aPE~~~--------~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~----- 621 (673)
+...... ......||+.|+|||++. +..++.++|||||||++|||++|+.||..............
T Consensus 164 ~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~ 242 (319)
T 4euu_A 164 RELEDDE-QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITG 242 (319)
T ss_dssp EECCTTC-CBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHH
T ss_pred eecCCCC-ceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhcC
Confidence 8875443 234467899999999886 56789999999999999999999999863322111000000
Q ss_pred ---cc---------cccccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHh
Q 005864 622 ---LS---------LNEILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLL 671 (673)
Q Consensus 622 ---~~---------~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L 671 (673)
.. ..-.....++............+.+++.+||+.||++|||++|+++..
T Consensus 243 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~ 304 (319)
T 4euu_A 243 KPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAET 304 (319)
T ss_dssp CCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHH
T ss_pred CCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhcc
Confidence 00 000011233333345567778899999999999999999999999865
No 42
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=100.00 E-value=4.2e-43 Score=364.60 Aligned_cols=254 Identities=23% Similarity=0.338 Sum_probs=211.1
Q ss_pred HhcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeE
Q 005864 400 ATKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFL 478 (673)
Q Consensus 400 ~~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 478 (673)
..++|++.+.||+|+||.||+|... +|+.||+|++...... ....+.+.+|+.++++++||||+++++++.+++..++
T Consensus 27 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~-~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~l 105 (362)
T 2bdw_A 27 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLS-ARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYL 105 (362)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred cccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCC-HHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEE
Confidence 3567999999999999999999765 6999999998764332 2346778999999999999999999999999999999
Q ss_pred EEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCC---ceEEeccccee
Q 005864 479 VYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEY---EARVSDFGIAK 555 (673)
Q Consensus 479 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~---~~kl~Dfg~~~ 555 (673)
||||+++|+|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++ .+||+|||++.
T Consensus 106 v~e~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~ 179 (362)
T 2bdw_A 106 VFDLVTGGELFEDIVAR---EFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAI 179 (362)
T ss_dssp EECCCCSCBHHHHHTTC---SCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEESCSSTTCCEEECCCTTCB
T ss_pred EEecCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEeecCcce
Confidence 99999999999999765 3588999999999999999999999 999999999999998654 59999999998
Q ss_pred ecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCC
Q 005864 556 FLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLP 635 (673)
Q Consensus 556 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (673)
..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||..... ......+.......+
T Consensus 180 ~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~--------~~~~~~i~~~~~~~~ 250 (362)
T 2bdw_A 180 EVNDS-EAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ--------HRLYAQIKAGAYDYP 250 (362)
T ss_dssp CCTTC-CSCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--------HHHHHHHHHTCCCCC
T ss_pred EecCC-cccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH--------HHHHHHHHhCCCCCC
Confidence 76533 233456799999999999998999999999999999999999999864321 111222222333333
Q ss_pred CcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 636 SRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 636 ~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
...+...+.++.+++.+||+.||++|||+.|+++
T Consensus 251 ~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 284 (362)
T 2bdw_A 251 SPEWDTVTPEAKSLIDSMLTVNPKKRITADQALK 284 (362)
T ss_dssp TTGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred cccccCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 3334445667999999999999999999999875
No 43
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=100.00 E-value=8.6e-43 Score=359.55 Aligned_cols=253 Identities=23% Similarity=0.318 Sum_probs=207.1
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhcc-CCCcccceeeeeecCCeeeEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEI-RHRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv 479 (673)
++|++.+.||+|+||.||+|+.. +|+.||+|++...........+.+.+|..++.++ +||||+++++++.+++..++|
T Consensus 9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv 88 (345)
T 3a8x_A 9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV 88 (345)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEE
Confidence 56889999999999999999875 6899999999876555555677889999999988 899999999999999999999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCC
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKP 559 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~ 559 (673)
|||+++|+|.+++...+ .+++..+..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 89 ~e~~~gg~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~ 162 (345)
T 3a8x_A 89 IEYVNGGDLMFHMQRQR---KLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR 162 (345)
T ss_dssp ECCCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCGGGCBCSCC
T ss_pred EeCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEEeccccccccC
Confidence 99999999999998653 488999999999999999999999 999999999999999999999999999986544
Q ss_pred CCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCccccccccccc-ccccccccccCCCCCCCCcc
Q 005864 560 GSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSS-NMNLSLNEILDPRLPLPSRN 638 (673)
Q Consensus 560 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 638 (673)
.........||+.|+|||++.+..++.++||||+||++|||++|+.||........... ........+.......+..
T Consensus 163 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~- 241 (345)
T 3a8x_A 163 PGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRS- 241 (345)
T ss_dssp TTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCCCCCCTT-
T ss_pred CCCcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCCCCCCCC-
Confidence 44445567899999999999999999999999999999999999999974322111000 0111112222333333322
Q ss_pred hHHHHHHHHHHHHHcccCCCCCCCCH
Q 005864 639 IQDKLISILEVALLCLEESPESRPTM 664 (673)
Q Consensus 639 ~~~~~~~l~~li~~cl~~dp~~Rps~ 664 (673)
.+.++.+++.+||+.||++||++
T Consensus 242 ---~s~~~~~li~~lL~~dP~~R~~~ 264 (345)
T 3a8x_A 242 ---LSVKAASVLKSFLNKDPKERLGC 264 (345)
T ss_dssp ---SCHHHHHHHHHHTCSSTTTSTTC
T ss_pred ---CCHHHHHHHHHHhcCCHhHCCCC
Confidence 23458899999999999999995
No 44
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=100.00 E-value=6.1e-43 Score=355.32 Aligned_cols=255 Identities=26% Similarity=0.412 Sum_probs=198.6
Q ss_pred hcCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhc--cCCCcccceeeeeec----CC
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTE--IRHRNIVKFYGFCSH----PR 474 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~l~~~~~~----~~ 474 (673)
.++|++.+.||+|+||+||+|++ +|+.||||++... ....+..|.+++.. ++||||+++++++.. ..
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~------~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~ 79 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR------DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSST 79 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG------GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc------cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCc
Confidence 46799999999999999999988 7999999998643 13445556666666 799999999999754 34
Q ss_pred eeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHh--------hcCCCCeEEecCCCCCeEeCCCCce
Q 005864 475 HSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMH--------HDCFPPIVHRDISSKNVLLSSEYEA 546 (673)
Q Consensus 475 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH--------~~~~~~ivH~dlk~~Nill~~~~~~ 546 (673)
..++||||+++|+|.++++.. .+++..+..++.|++.||+||| +. +|+||||||+||+++.++.+
T Consensus 80 ~~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nill~~~~~~ 152 (301)
T 3q4u_A 80 QLWLITHYHEMGSLYDYLQLT----TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKP---AIAHRDLKSKNILVKKNGQC 152 (301)
T ss_dssp EEEEEECCCTTCBHHHHHTTC----CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBC---EEECSCCCGGGEEECTTSCE
T ss_pred eeEEehhhccCCCHHHHHhhc----ccCHHHHHHHHHHHHHHHHHHHHhhhhccCCC---CeecCCCChHhEEEcCCCCE
Confidence 578999999999999999653 4899999999999999999999 77 99999999999999999999
Q ss_pred EEecccceeecCCCCCC----ceecccccccccccccccC------CcCcchhHHHHHHHHHHHHhC----------CCC
Q 005864 547 RVSDFGIAKFLKPGSSN----WTEFAGTFGYVAPELAYTM------KVTEKCDVYSFGVLALEVIKG----------KHP 606 (673)
Q Consensus 547 kl~Dfg~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~------~~~~~~Dv~slG~il~el~~g----------~~p 606 (673)
||+|||+++........ .....||+.|+|||.+.+. .++.++||||||+++|||++| +.|
T Consensus 153 kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~p 232 (301)
T 3q4u_A 153 CIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPP 232 (301)
T ss_dssp EECCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCT
T ss_pred EEeeCCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCcccccccccc
Confidence 99999999876543332 2234789999999998876 556799999999999999999 777
Q ss_pred Ccccccccccccccccccccc--cCC-CCCCCC-cchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhhC
Q 005864 607 RDFISLLSSSSSNMNLSLNEI--LDP-RLPLPS-RNIQDKLISILEVALLCLEESPESRPTMQTVCQLLCK 673 (673)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~-~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~~ 673 (673)
|.......... ...... .+. ....+. ......+.++.+++.+||+.||++|||++|+++.|++
T Consensus 233 f~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~ 299 (301)
T 3q4u_A 233 FYDVVPNDPSF----EDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTK 299 (301)
T ss_dssp TTTTSCSSCCH----HHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHH
T ss_pred ccccCCCCcch----hhhhHHHhccCCCCCCChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhc
Confidence 65322111100 001110 111 111111 1223466789999999999999999999999999863
No 45
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=100.00 E-value=1.2e-42 Score=354.17 Aligned_cols=247 Identities=23% Similarity=0.353 Sum_probs=208.7
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
++|++.+.||+|+||+||+|+.. +|+.||+|+++..........+.+.+|+.+++.++||||+++++++.+.+..++||
T Consensus 6 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~ 85 (318)
T 1fot_A 6 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM 85 (318)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEEE
Confidence 57889999999999999999775 69999999997654444445677889999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
||+++|+|.+++...+ .+++..+..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 86 e~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~ 159 (318)
T 1fot_A 86 DYIEGGELFSLLRKSQ---RFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV 159 (318)
T ss_dssp CCCCSCBHHHHHHHTS---SCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEECCCSSCEECSSC
T ss_pred eCCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChheEEEcCCCCEEEeecCcceecCCc
Confidence 9999999999998753 488899999999999999999999 9999999999999999999999999999876432
Q ss_pred CCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcchH
Q 005864 561 SSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRNIQ 640 (673)
Q Consensus 561 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (673)
.....||+.|+|||.+.+..++.++||||+||++|||++|+.||...... .....+.......+..
T Consensus 160 ---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~--------~~~~~i~~~~~~~p~~--- 225 (318)
T 1fot_A 160 ---TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTM--------KTYEKILNAELRFPPF--- 225 (318)
T ss_dssp ---BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHH--------HHHHHHHHCCCCCCTT---
T ss_pred ---cccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHH--------HHHHHHHhCCCCCCCC---
Confidence 23467999999999999999999999999999999999999999743221 1222233333333322
Q ss_pred HHHHHHHHHHHHcccCCCCCCC-----CHHHHHH
Q 005864 641 DKLISILEVALLCLEESPESRP-----TMQTVCQ 669 (673)
Q Consensus 641 ~~~~~l~~li~~cl~~dp~~Rp-----s~~~v~~ 669 (673)
.+.++.+++.+||+.||++|| +++|+++
T Consensus 226 -~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~ 258 (318)
T 1fot_A 226 -FNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKN 258 (318)
T ss_dssp -SCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred -CCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhc
Confidence 234588999999999999999 8888874
No 46
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=100.00 E-value=1.6e-42 Score=347.88 Aligned_cols=252 Identities=25% Similarity=0.428 Sum_probs=188.0
Q ss_pred hcCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 479 (673)
.++|++.+.||+|+||.||+|.. .+|+.||+|.+...........+.+.+|+.++.+++||||+++++++.+++..++|
T Consensus 10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (278)
T 3cok_A 10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV 89 (278)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence 35788999999999999999976 57999999998765444444467899999999999999999999999999999999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCC
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKP 559 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~ 559 (673)
|||+++++|.+++.... ..+++..+..++.|+++||+|||+. +++||||||+||+++.++.+||+|||++.....
T Consensus 90 ~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~ 164 (278)
T 3cok_A 90 LEMCHNGEMNRYLKNRV--KPFSENEARHFMHQIITGMLYLHSH---GILHRDLTLSNLLLTRNMNIKIADFGLATQLKM 164 (278)
T ss_dssp EECCTTEEHHHHHHTCS--SCCCHHHHHHHHHHHHHHHHHHHHT---TEECSSCCGGGEEECTTCCEEECCCTTCEECC-
T ss_pred EecCCCCcHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEEeecceeeccC
Confidence 99999999999998653 4589999999999999999999999 999999999999999999999999999987754
Q ss_pred CCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcch
Q 005864 560 GSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRNI 639 (673)
Q Consensus 560 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (673)
.........|++.|+|||.+.+..++.++||||+|+++|||++|+.||...... .....+.......+.
T Consensus 165 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--------~~~~~~~~~~~~~~~--- 233 (278)
T 3cok_A 165 PHEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVK--------NTLNKVVLADYEMPS--- 233 (278)
T ss_dssp ---------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC-------------CCSSCCCCCT---
T ss_pred CCCcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHH--------HHHHHHhhcccCCcc---
Confidence 444444567899999999999888999999999999999999999998743221 111122222222222
Q ss_pred HHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 640 QDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 640 ~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
..+.++.+++.+||+.||++|||++|+++
T Consensus 234 -~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 262 (278)
T 3cok_A 234 -FLSIEAKDLIHQLLRRNPADRLSLSSVLD 262 (278)
T ss_dssp -TSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred -ccCHHHHHHHHHHcccCHhhCCCHHHHhc
Confidence 22345889999999999999999999975
No 47
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=100.00 E-value=7.4e-43 Score=355.72 Aligned_cols=262 Identities=20% Similarity=0.278 Sum_probs=203.5
Q ss_pred hcCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
.++|++.+.||+|+||+||+|+..+|+.||+|++..... .....+.+.+|++++++++||||+++++++.+++..++||
T Consensus 20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 98 (311)
T 3niz_A 20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAE-DEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVF 98 (311)
T ss_dssp SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC-------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEE
T ss_pred HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccc-cchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEE
Confidence 367999999999999999999998899999999875432 2334577889999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
||+++ +|.+++.... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++......
T Consensus 99 e~~~~-~l~~~~~~~~--~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~ 172 (311)
T 3niz_A 99 EFMEK-DLKKVLDENK--TGLQDSQIKIYLYQLLRGVAHCHQH---RILHRDLKPQNLLINSDGALKLADFGLARAFGIP 172 (311)
T ss_dssp ECCSE-EHHHHHHTCT--TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEETTSC
T ss_pred cCCCC-CHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCchHhEEECCCCCEEEccCcCceecCCC
Confidence 99986 8888887654 4588999999999999999999999 9999999999999999999999999999987655
Q ss_pred CCCceeccccccccccccccc-CCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccc-------ccccccc------
Q 005864 561 SSNWTEFAGTFGYVAPELAYT-MKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSN-------MNLSLNE------ 626 (673)
Q Consensus 561 ~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~-------~~~~~~~------ 626 (673)
........+|+.|+|||.+.+ ..++.++||||+||++|||++|+.||......+..... ....+..
T Consensus 173 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 252 (311)
T 3niz_A 173 VRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREWPQVQELPL 252 (311)
T ss_dssp CC---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHHHHHHHCCCCTTTSGGGTTSHH
T ss_pred cccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHCCCChHHhhhhhccch
Confidence 555556678999999999876 56899999999999999999999999743322110000 0000000
Q ss_pred ccCCCCCC-CCcc----hHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 627 ILDPRLPL-PSRN----IQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 627 ~~~~~~~~-~~~~----~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
........ .... ....+.++.+++.+||+.||++|||++|+++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 300 (311)
T 3niz_A 253 WKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN 300 (311)
T ss_dssp HHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred hhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 00000000 0000 0112346889999999999999999999986
No 48
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=100.00 E-value=9.6e-43 Score=347.50 Aligned_cols=252 Identities=26% Similarity=0.422 Sum_probs=208.1
Q ss_pred hcCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
.++|++.+.||+|+||+||+|+..++..||+|++...... .+++.+|++++.+++||||+++++++.+++..++||
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 82 (268)
T 3sxs_A 7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMS----EDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVT 82 (268)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTBC----HHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEE
T ss_pred hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCCc----HHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEE
Confidence 3578899999999999999999988889999998764322 456889999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
||+++++|.+++...+ ..+++..+..++.|++.||+|||+. +++||||||+||+++.++.+||+|||++......
T Consensus 83 e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~ 157 (268)
T 3sxs_A 83 EYISNGCLLNYLRSHG--KGLEPSQLLEMCYDVCEGMAFLESH---QFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDD 157 (268)
T ss_dssp ECCTTCBHHHHHHHHG--GGCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCSGGGEEECTTCCEEECCTTCEEECCTT
T ss_pred EccCCCcHHHHHHHcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCcceEEECCCCCEEEccCccceecchh
Confidence 9999999999997653 4589999999999999999999999 9999999999999999999999999999876543
Q ss_pred CCC-ceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccccccccccccCCC-CCCCCc
Q 005864 561 SSN-WTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLSLNEILDPR-LPLPSR 637 (673)
Q Consensus 561 ~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 637 (673)
... .....+++.|+|||.+.+..++.++||||+|+++|||++ |+.||+.....+. ...+.... ...+..
T Consensus 158 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~--------~~~~~~~~~~~~~~~ 229 (268)
T 3sxs_A 158 QYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEV--------VLKVSQGHRLYRPHL 229 (268)
T ss_dssp CEEECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHH--------HHHHHTTCCCCCCTT
T ss_pred hhhcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHHH--------HHHHHcCCCCCCCCc
Confidence 221 123345678999999998899999999999999999999 9999874332111 11111111 111111
Q ss_pred chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhhC
Q 005864 638 NIQDKLISILEVALLCLEESPESRPTMQTVCQLLCK 673 (673)
Q Consensus 638 ~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~~ 673 (673)
.+..+.+++.+||+.||++|||++|+++.|++
T Consensus 230 ----~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~ 261 (268)
T 3sxs_A 230 ----ASDTIYQIMYSCWHELPEKRPTFQQLLSSIEP 261 (268)
T ss_dssp ----SCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGG
T ss_pred ----ChHHHHHHHHHHcCCChhhCcCHHHHHHHHHH
Confidence 23358899999999999999999999999863
No 49
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=100.00 E-value=2.4e-43 Score=368.03 Aligned_cols=252 Identities=25% Similarity=0.458 Sum_probs=195.9
Q ss_pred cCCCccceeccCCcEEEEEEEeC----CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeee
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP----SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSF 477 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 477 (673)
.+|++.+.||+|+||+||+|++. ++..||||+++... .....+.+.+|+.++.+++||||+++++++.+++..+
T Consensus 45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 122 (373)
T 2qol_A 45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGY--TEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVM 122 (373)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCE
T ss_pred hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCcc--CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceE
Confidence 57899999999999999999764 57789999987542 2335678999999999999999999999999999999
Q ss_pred EEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeec
Q 005864 478 LVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFL 557 (673)
Q Consensus 478 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~ 557 (673)
+||||+++|+|.++++..+ ..+++.++..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 123 lv~e~~~~~sL~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~ 197 (373)
T 2qol_A 123 IVTEYMENGSLDSFLRKHD--AQFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLGRVL 197 (373)
T ss_dssp EEEECCTTCBHHHHHHTTT--TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC------
T ss_pred EEEeCCCCCcHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEEcCCCCEEECcCcccccc
Confidence 9999999999999998653 4589999999999999999999999 9999999999999999999999999999876
Q ss_pred CCCCCCc---eecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccccccccccccCC-CC
Q 005864 558 KPGSSNW---TEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLSLNEILDP-RL 632 (673)
Q Consensus 558 ~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~ 632 (673)
....... ....+++.|+|||++.+..++.++||||||+++|||++ |+.||......+. ...+... +.
T Consensus 198 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~~~--------~~~i~~~~~~ 269 (373)
T 2qol_A 198 EDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDV--------IKAVDEGYRL 269 (373)
T ss_dssp ----------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHHHH--------HHHHHTTEEC
T ss_pred ccCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHH--------HHHHHcCCCC
Confidence 5432211 12335678999999999999999999999999999998 9999864322111 0111111 11
Q ss_pred CCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 633 PLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 633 ~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
+.+. ..+..+.+++.+||+.||++||++.|+++.|+
T Consensus 270 ~~~~----~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~ 305 (373)
T 2qol_A 270 PPPM----DCPAALYQLMLDCWQKDRNNRPKFEQIVSILD 305 (373)
T ss_dssp CCCT----TCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CCCc----cccHHHHHHHHHHhCcChhhCcCHHHHHHHHH
Confidence 1111 23345889999999999999999999999886
No 50
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=100.00 E-value=7.7e-43 Score=357.95 Aligned_cols=253 Identities=21% Similarity=0.308 Sum_probs=208.0
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhh---HHHHHHHHHHHHHhccCCCcccceeeeeecCCeee
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEI---SVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSF 477 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 477 (673)
+.|++.+.||+|+||.||+|... +|+.||+|.+........ ...+.+.+|+.++.+++||||+++++++.+++..+
T Consensus 11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~ 90 (326)
T 2y0a_A 11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI 90 (326)
T ss_dssp HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence 56889999999999999999775 699999999876432211 13577899999999999999999999999999999
Q ss_pred EEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCC----ceEEecccc
Q 005864 478 LVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEY----EARVSDFGI 553 (673)
Q Consensus 478 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~----~~kl~Dfg~ 553 (673)
+||||+++|+|.+++... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++ .+||+|||+
T Consensus 91 lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~ 164 (326)
T 2y0a_A 91 LILELVAGGELFDFLAEK---ESLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPRIKIIDFGL 164 (326)
T ss_dssp EEEECCCSCBHHHHHTTS---SCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCSSSSSCCEEECCCTT
T ss_pred EEEEcCCCCCHHHHHHhc---CCcCHHHHHHHHHHHHHHHHHHHHC---CeEcCCCCHHHEEEecCCCCCCCEEEEECCC
Confidence 999999999999999764 3589999999999999999999999 999999999999999887 799999999
Q ss_pred eeecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCC
Q 005864 554 AKFLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLP 633 (673)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (673)
+....... ......||+.|+|||++.+..++.++||||+||++|||++|+.||...... .....+......
T Consensus 165 a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--------~~~~~~~~~~~~ 235 (326)
T 2y0a_A 165 AHKIDFGN-EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQ--------ETLANVSAVNYE 235 (326)
T ss_dssp CEECCTTS-CCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHH--------HHHHHHHHTCCC
T ss_pred CeECCCCC-ccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHH--------HHHHHHHhcCCC
Confidence 98875432 234567999999999999889999999999999999999999998643211 111111111222
Q ss_pred CCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 634 LPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 634 ~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.+.......+..+.+++.+||+.||++|||++|+++
T Consensus 236 ~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 271 (326)
T 2y0a_A 236 FEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ 271 (326)
T ss_dssp CCHHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred cCccccccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 222222233456889999999999999999999986
No 51
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=100.00 E-value=3e-43 Score=362.16 Aligned_cols=252 Identities=21% Similarity=0.288 Sum_probs=208.3
Q ss_pred HHhcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhcc-CCCcccceeeeeecCCee
Q 005864 399 RATKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEI-RHRNIVKFYGFCSHPRHS 476 (673)
Q Consensus 399 ~~~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~ 476 (673)
...++|.+.+.||+|+||+||+|+.+ +|+.||+|+++..........+.+..|..++..+ +||||+++++++.+++..
T Consensus 14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~ 93 (345)
T 1xjd_A 14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENL 93 (345)
T ss_dssp --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEE
Confidence 34578999999999999999999875 6899999999765433334466788899999887 899999999999999999
Q ss_pred eEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceee
Q 005864 477 FLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKF 556 (673)
Q Consensus 477 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~ 556 (673)
++||||+++|+|.+++...+ .+++..+..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++.
T Consensus 94 ~lv~E~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~~ 167 (345)
T 1xjd_A 94 FFVMEYLNGGDLMYHIQSCH---KFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGMCKE 167 (345)
T ss_dssp EEEEECCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred EEEEeCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCChhhEEECCCCCEEEeEChhhhh
Confidence 99999999999999998653 488999999999999999999999 999999999999999999999999999986
Q ss_pred cCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCC
Q 005864 557 LKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPS 636 (673)
Q Consensus 557 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (673)
............||+.|+|||++.+..++.++||||+||++|||++|+.||...... .....+.......+.
T Consensus 168 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~--------~~~~~i~~~~~~~p~ 239 (345)
T 1xjd_A 168 NMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEE--------ELFHSIRMDNPFYPR 239 (345)
T ss_dssp CCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--------HHHHHHHHCCCCCCT
T ss_pred cccCCCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHH--------HHHHHHHhCCCCCCc
Confidence 544444455678999999999999999999999999999999999999999743221 111122222222222
Q ss_pred cchHHHHHHHHHHHHHcccCCCCCCCCHH-HHH
Q 005864 637 RNIQDKLISILEVALLCLEESPESRPTMQ-TVC 668 (673)
Q Consensus 637 ~~~~~~~~~l~~li~~cl~~dp~~Rps~~-~v~ 668 (673)
. .+.++.+++.+||+.||++||++. |++
T Consensus 240 ~----~s~~~~~li~~lL~~dp~~R~~~~~~i~ 268 (345)
T 1xjd_A 240 W----LEKEAKDLLVKLFVREPEKRLGVRGDIR 268 (345)
T ss_dssp T----SCHHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred c----cCHHHHHHHHHHhcCCHhHcCCChHHHH
Confidence 1 234588999999999999999987 554
No 52
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=100.00 E-value=3.3e-43 Score=368.21 Aligned_cols=254 Identities=24% Similarity=0.418 Sum_probs=207.1
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 479 (673)
.++|.+.+.||+|+||+||+|.+. +++.||||.++... .....+.+.+|++++++++||||+++++++..++..++|
T Consensus 113 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 190 (377)
T 3cbl_A 113 HEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETL--PPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIV 190 (377)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTS--CHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEE
T ss_pred hHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccC--CHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEE
Confidence 357888999999999999999886 79999999987542 233456789999999999999999999999999999999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCC
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKP 559 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~ 559 (673)
|||+++|+|.++++..+ ..+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 191 ~e~~~~g~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~ 265 (377)
T 3cbl_A 191 MELVQGGDFLTFLRTEG--ARLRVKTLLQMVGDAAAGMEYLESK---CCIHRDLAARNCLVTEKNVLKISDFGMSREEAD 265 (377)
T ss_dssp EECCTTCBHHHHHHHHG--GGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEECTT
T ss_pred EEcCCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CcCCcccCHHHEEEcCCCcEEECcCCCceecCC
Confidence 99999999999998643 4588999999999999999999999 999999999999999999999999999986543
Q ss_pred CCCCc--eecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccccccccccccCCCCCCCC
Q 005864 560 GSSNW--TEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPS 636 (673)
Q Consensus 560 ~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (673)
..... ....+++.|+|||.+.+..++.++||||||+++|||++ |..||......+.. ..... ..+++.+.
T Consensus 266 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~~~-----~~~~~--~~~~~~~~ 338 (377)
T 3cbl_A 266 GVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQTR-----EFVEK--GGRLPCPE 338 (377)
T ss_dssp SEEECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHHHH-----HHHHT--TCCCCCCT
T ss_pred CceeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHH-----HHHHc--CCCCCCCC
Confidence 21111 12235678999999998899999999999999999998 99998743321110 00000 11222222
Q ss_pred cchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 637 RNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 637 ~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
. .+.++.+++.+||+.||++|||++++++.|+
T Consensus 339 ~----~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~ 370 (377)
T 3cbl_A 339 L----CPDAVFRLMEQCWAYEPGQRPSFSTIYQELQ 370 (377)
T ss_dssp T----CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred C----CCHHHHHHHHHHcCCCchhCcCHHHHHHHHH
Confidence 2 2345889999999999999999999999986
No 53
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=100.00 E-value=1.3e-42 Score=358.25 Aligned_cols=252 Identities=19% Similarity=0.344 Sum_probs=205.7
Q ss_pred HhcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCC----
Q 005864 400 ATKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPR---- 474 (673)
Q Consensus 400 ~~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~---- 474 (673)
..++|++.+.||+|+||.||+|++. +|+.||||++.... .....+.+.+|+.++++++||||+++++++.+..
T Consensus 4 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~ 81 (332)
T 3qd2_B 4 YLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPN--RELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKW 81 (332)
T ss_dssp HHHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCS--TTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHH
T ss_pred hhhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCC--chhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchh
Confidence 3467899999999999999999876 79999999987543 2334678999999999999999999999986543
Q ss_pred -----------------------------------------------------eeeEEEecccCCChHHHHhcCCCCccc
Q 005864 475 -----------------------------------------------------HSFLVYECLERGSLAEILSNDGSIKEF 501 (673)
Q Consensus 475 -----------------------------------------------------~~~lv~e~~~~gsL~~~l~~~~~~~~l 501 (673)
..++||||+++|+|.+++.........
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~ 161 (332)
T 3qd2_B 82 QEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDR 161 (332)
T ss_dssp HHHHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGS
T ss_pred hhhhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccch
Confidence 278999999999999999987766677
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCCCC------------Cceeccc
Q 005864 502 SWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPGSS------------NWTEFAG 569 (673)
Q Consensus 502 ~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~------------~~~~~~~ 569 (673)
++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++....... ......|
T Consensus 162 ~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~g 238 (332)
T 3qd2_B 162 EHGVCLHIFIQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVG 238 (332)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-
T ss_pred hhHHHHHHHHHHHHHHHHHHhC---CeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCC
Confidence 8888999999999999999999 999999999999999999999999999998765421 2233568
Q ss_pred ccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcchHHHHHHHHHH
Q 005864 570 TFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRNIQDKLISILEV 649 (673)
Q Consensus 570 ~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 649 (673)
|+.|+|||.+.+..++.++||||+|+++|||++|..|+..... ..........+ ........++.++
T Consensus 239 t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~~~----------~~~~~~~~~~~---~~~~~~~~~~~~l 305 (332)
T 3qd2_B 239 TKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMERVR----------IITDVRNLKFP---LLFTQKYPQEHMM 305 (332)
T ss_dssp CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHHHH----------HHHHHHTTCCC---HHHHHHCHHHHHH
T ss_pred CcCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHHHH----------HHHHhhccCCC---cccccCChhHHHH
Confidence 9999999999999999999999999999999999888542111 11111111111 2334455678999
Q ss_pred HHHcccCCCCCCCCHHHHHH
Q 005864 650 ALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 650 i~~cl~~dp~~Rps~~~v~~ 669 (673)
+.+||+.||++|||++|+++
T Consensus 306 i~~~l~~~p~~Rps~~~~l~ 325 (332)
T 3qd2_B 306 VQDMLSPSPTERPEATDIIE 325 (332)
T ss_dssp HHHHHCSSGGGSCCHHHHHH
T ss_pred HHHHccCCCCcCCCHHHHhh
Confidence 99999999999999999986
No 54
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=100.00 E-value=6.9e-43 Score=357.96 Aligned_cols=263 Identities=24% Similarity=0.324 Sum_probs=203.6
Q ss_pred hcCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCC----ee
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPR----HS 476 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~----~~ 476 (673)
.++|++.+.||+|+||+||+|++. ++.||||++.... .....+.+|+.++.+++||||+++++++..+. ..
T Consensus 23 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 97 (322)
T 3soc_A 23 SMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQD----KQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDL 97 (322)
T ss_dssp TEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGG----HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEE
T ss_pred hhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCc----hHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceE
Confidence 367899999999999999999875 8999999986532 22445567999999999999999999998754 36
Q ss_pred eEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcC-------CCCeEEecCCCCCeEeCCCCceEEe
Q 005864 477 FLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDC-------FPPIVHRDISSKNVLLSSEYEARVS 549 (673)
Q Consensus 477 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~-------~~~ivH~dlk~~Nill~~~~~~kl~ 549 (673)
++||||+++|+|.++++.. .+++..+..++.|+++||+|||+.. .++|+||||||+||+++.++.+||+
T Consensus 98 ~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~ 173 (322)
T 3soc_A 98 WLITAFHEKGSLSDFLKAN----VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIA 173 (322)
T ss_dssp EEEEECCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEEC
T ss_pred EEEEecCCCCCHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEc
Confidence 9999999999999999764 3899999999999999999999861 2389999999999999999999999
Q ss_pred cccceeecCCCCCC--ceeccccccccccccccc-----CCcCcchhHHHHHHHHHHHHhCCCCCccccccccccc----
Q 005864 550 DFGIAKFLKPGSSN--WTEFAGTFGYVAPELAYT-----MKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSS---- 618 (673)
Q Consensus 550 Dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~-----~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~---- 618 (673)
|||+++........ .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||...........
T Consensus 174 DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~ 253 (322)
T 3soc_A 174 DFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEI 253 (322)
T ss_dssp CCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHH
T ss_pred cCCcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhh
Confidence 99999877544332 233578999999999876 3567789999999999999999999874322110000
Q ss_pred ----ccccccccccCCCCCC-CCc--chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 619 ----NMNLSLNEILDPRLPL-PSR--NIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 619 ----~~~~~~~~~~~~~~~~-~~~--~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
................ ... .....+.++.+++.+||+.||++|||++|+++.|+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~ 314 (322)
T 3soc_A 254 GQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERIT 314 (322)
T ss_dssp CSSCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred ccCCchhhhhhhhhcccCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence 0000001111111111 111 11234567999999999999999999999999986
No 55
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=100.00 E-value=1.2e-42 Score=358.97 Aligned_cols=251 Identities=20% Similarity=0.260 Sum_probs=210.1
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhcc-CCCcccceeeeeecCCeeeE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEI-RHRNIVKFYGFCSHPRHSFL 478 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~l 478 (673)
.++|++.+.||+|+||+||+|+.. +|+.||+|+++..........+.+..|..++..+ +||||+++++++.+.+..++
T Consensus 19 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l 98 (353)
T 2i0e_A 19 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYF 98 (353)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEE
Confidence 467999999999999999999876 4889999999875444444567788999999988 89999999999999999999
Q ss_pred EEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecC
Q 005864 479 VYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLK 558 (673)
Q Consensus 479 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~ 558 (673)
||||+++|+|.+++...+ .+++..+..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 99 v~E~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~~ 172 (353)
T 2i0e_A 99 VMEYVNGGDLMYHIQQVG---RFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENI 172 (353)
T ss_dssp EEECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCC
T ss_pred EEeCCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEEcCCCcEEEEeCCcccccc
Confidence 999999999999998653 488999999999999999999999 99999999999999999999999999998654
Q ss_pred CCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcc
Q 005864 559 PGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRN 638 (673)
Q Consensus 559 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (673)
..........||+.|+|||++.+..++.++|||||||++|||++|+.||..... ......+.......+..
T Consensus 173 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~--------~~~~~~i~~~~~~~p~~- 243 (353)
T 2i0e_A 173 WDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE--------DELFQSIMEHNVAYPKS- 243 (353)
T ss_dssp CTTCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH--------HHHHHHHHHCCCCCCTT-
T ss_pred cCCcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCH--------HHHHHHHHhCCCCCCCC-
Confidence 444445567899999999999999999999999999999999999999974322 11222333333333322
Q ss_pred hHHHHHHHHHHHHHcccCCCCCCCC-----HHHHHH
Q 005864 639 IQDKLISILEVALLCLEESPESRPT-----MQTVCQ 669 (673)
Q Consensus 639 ~~~~~~~l~~li~~cl~~dp~~Rps-----~~~v~~ 669 (673)
.+.++.+++.+||+.||++||+ ++|+++
T Consensus 244 ---~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~ 276 (353)
T 2i0e_A 244 ---MSKEAVAICKGLMTKHPGKRLGCGPEGERDIKE 276 (353)
T ss_dssp ---SCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHT
T ss_pred ---CCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhc
Confidence 3345889999999999999995 566653
No 56
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=100.00 E-value=1.9e-42 Score=357.46 Aligned_cols=247 Identities=21% Similarity=0.258 Sum_probs=209.2
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
++|++.+.||+|+||.||+|+.. +|+.||+|++...........+.+.+|+.+++.++||||+++++++.+++..++||
T Consensus 41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 120 (350)
T 1rdq_E 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM 120 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEE
Confidence 57889999999999999999775 69999999997654444445678899999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
||+++|+|.+++...+ .+++..+..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 121 e~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~ 194 (350)
T 1rdq_E 121 EYVAGGEMFSHLRRIG---RFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR 194 (350)
T ss_dssp ECCTTCBHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECSSC
T ss_pred cCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccccCccceEEECCCCCEEEcccccceeccCC
Confidence 9999999999998753 488999999999999999999999 9999999999999999999999999999876432
Q ss_pred CCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcchH
Q 005864 561 SSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRNIQ 640 (673)
Q Consensus 561 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (673)
.....||+.|+|||++.+..++.++|||||||++|||++|+.||...... .....+.......+..
T Consensus 195 ---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~--------~~~~~i~~~~~~~p~~--- 260 (350)
T 1rdq_E 195 ---TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPI--------QIYEKIVSGKVRFPSH--- 260 (350)
T ss_dssp ---BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--------HHHHHHHHCCCCCCTT---
T ss_pred ---cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHH--------HHHHHHHcCCCCCCCC---
Confidence 23467899999999999999999999999999999999999999743221 1222233333333322
Q ss_pred HHHHHHHHHHHHcccCCCCCCCC-----HHHHHH
Q 005864 641 DKLISILEVALLCLEESPESRPT-----MQTVCQ 669 (673)
Q Consensus 641 ~~~~~l~~li~~cl~~dp~~Rps-----~~~v~~ 669 (673)
.+.++.+++.+||+.||++||+ ++|+++
T Consensus 261 -~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~ 293 (350)
T 1rdq_E 261 -FSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN 293 (350)
T ss_dssp -CCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred -CCHHHHHHHHHHhhcCHHhccCCccCCHHHHHh
Confidence 2345889999999999999998 888764
No 57
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=6e-43 Score=349.13 Aligned_cols=250 Identities=26% Similarity=0.430 Sum_probs=207.0
Q ss_pred cCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEEe
Q 005864 402 KNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVYE 481 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 481 (673)
++|++.+.||+|+||+||+|.+.+++.||+|++...... .+.+.+|++++++++||||+++++++.+++..++|||
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 85 (269)
T 4hcu_A 10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMS----EEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFE 85 (269)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSBC----HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred hhceeeheecCCCccEEEEEEecCCCeEEEEEecccccC----HHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEE
Confidence 578889999999999999999988999999998754322 3568899999999999999999999999999999999
Q ss_pred cccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCCC
Q 005864 482 CLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPGS 561 (673)
Q Consensus 482 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~ 561 (673)
|+++|+|.+++.... ..+++..+..++.|+++||+|||+. +++||||||+||+++.++.+||+|||++.......
T Consensus 86 ~~~~~~L~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 160 (269)
T 4hcu_A 86 FMEHGCLSDYLRTQR--GLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ 160 (269)
T ss_dssp CCTTCBHHHHHHTTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHH
T ss_pred eCCCCcHHHHHHhcC--cccCHHHHHHHHHHHHHHHHHHHhC---CeecCCcchheEEEcCCCCEEeccccccccccccc
Confidence 999999999997654 4588999999999999999999999 99999999999999999999999999998654321
Q ss_pred C-CceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccccccccccccCC-CCCCCCcc
Q 005864 562 S-NWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLSLNEILDP-RLPLPSRN 638 (673)
Q Consensus 562 ~-~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 638 (673)
. ......+++.|+|||.+.+..++.++||||+|+++|||++ |+.||......+ ....+... ....+.
T Consensus 161 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~--------~~~~~~~~~~~~~~~-- 230 (269)
T 4hcu_A 161 YTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE--------VVEDISTGFRLYKPR-- 230 (269)
T ss_dssp HHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH--------HHHHHHTTCCCCCCT--
T ss_pred cccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHH--------HHHHHhcCccCCCCC--
Confidence 1 1233456778999999998999999999999999999999 999987432211 11111111 111111
Q ss_pred hHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 639 IQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 639 ~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
..+..+.+++.+||+.||++|||++|+++.|+
T Consensus 231 --~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~ 262 (269)
T 4hcu_A 231 --LASTHVYQIMNHCWRERPEDRPAFSRLLRQLA 262 (269)
T ss_dssp --TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred --cCCHHHHHHHHHHccCCcccCcCHHHHHHHHH
Confidence 12345889999999999999999999999986
No 58
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=100.00 E-value=3.2e-42 Score=358.58 Aligned_cols=252 Identities=24% Similarity=0.339 Sum_probs=207.2
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
++|++.+.||+|+||.||+|+.. +|+.||+|++...........+.+.+|+.++..++|||||++++++.+.+..++||
T Consensus 15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~ 94 (384)
T 4fr4_A 15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVV 94 (384)
T ss_dssp GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence 57889999999999999999765 58899999997655444555678999999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
||+++|+|.+++... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++..+...
T Consensus 95 e~~~gg~L~~~l~~~---~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~ 168 (384)
T 4fr4_A 95 DLLLGGDLRYHLQQN---VHFKEETVKLFICELVMALDYLQNQ---RIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRE 168 (384)
T ss_dssp CCCTTEEHHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred ecCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEECCCCCEEEeccceeeeccCC
Confidence 999999999999875 3488999999999999999999999 9999999999999999999999999999877543
Q ss_pred CCCceeccccccccccccccc---CCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCc
Q 005864 561 SSNWTEFAGTFGYVAPELAYT---MKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSR 637 (673)
Q Consensus 561 ~~~~~~~~~~~~y~aPE~~~~---~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (673)
.......||+.|+|||++.+ ..++.++|||||||++|||++|+.||....... .......+.......+.
T Consensus 169 -~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~-----~~~~~~~~~~~~~~~p~- 241 (384)
T 4fr4_A 169 -TQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTS-----SKEIVHTFETTVVTYPS- 241 (384)
T ss_dssp -CCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSC-----HHHHHHHHHHCCCCCCT-
T ss_pred -CceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCcc-----HHHHHHHHhhcccCCCC-
Confidence 33455789999999999864 458999999999999999999999996322110 01111111122222222
Q ss_pred chHHHHHHHHHHHHHcccCCCCCCCC-HHHHHH
Q 005864 638 NIQDKLISILEVALLCLEESPESRPT-MQTVCQ 669 (673)
Q Consensus 638 ~~~~~~~~l~~li~~cl~~dp~~Rps-~~~v~~ 669 (673)
..+..+.+++.+||+.||++||+ ++++.+
T Consensus 242 ---~~s~~~~~li~~lL~~dP~~R~s~~~~l~~ 271 (384)
T 4fr4_A 242 ---AWSQEMVSLLKKLLEPNPDQRFSQLSDVQN 271 (384)
T ss_dssp ---TSCHHHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred ---cCCHHHHHHHHHHhcCCHhHhcccHHHHHc
Confidence 22345889999999999999998 676653
No 59
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=100.00 E-value=1.7e-43 Score=371.62 Aligned_cols=257 Identities=20% Similarity=0.286 Sum_probs=208.5
Q ss_pred HHHHHhcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCC
Q 005864 396 EIIRATKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPR 474 (673)
Q Consensus 396 ~~~~~~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~ 474 (673)
++....++|++.+.||+|+||+||+|+.. +|+.||+|++++.........+.+.+|+.++..++|||||++++++.+++
T Consensus 63 ~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~ 142 (410)
T 3v8s_A 63 DLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDR 142 (410)
T ss_dssp HHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred hcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECC
Confidence 44445678999999999999999999775 58999999987643333333456889999999999999999999999999
Q ss_pred eeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccce
Q 005864 475 HSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIA 554 (673)
Q Consensus 475 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~ 554 (673)
..++||||+++|+|.++++.. .+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 143 ~~~lV~E~~~gg~L~~~l~~~----~~~e~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFG~a 215 (410)
T 3v8s_A 143 YLYMVMEYMPGGDLVNLMSNY----DVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADFGTC 215 (410)
T ss_dssp EEEEEECCCTTEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred EEEEEEeCCCCCcHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeeECCCCCEEEecccee
Confidence 999999999999999999764 378899999999999999999999 9999999999999999999999999999
Q ss_pred eecCCCCC-CceecccccccccccccccCC----cCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccC
Q 005864 555 KFLKPGSS-NWTEFAGTFGYVAPELAYTMK----VTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILD 629 (673)
Q Consensus 555 ~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~----~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~ 629 (673)
+....... ......||+.|+|||++.+.. ++.++|||||||++|||++|+.||...... .....++.
T Consensus 216 ~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~--------~~~~~i~~ 287 (410)
T 3v8s_A 216 MKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLV--------GTYSKIMN 287 (410)
T ss_dssp EECCTTSEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHH--------HHHHHHHT
T ss_pred EeeccCCcccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChh--------hHHHHHHh
Confidence 87654332 223567999999999997665 789999999999999999999999743221 11122221
Q ss_pred CC--CCCCCcchHHHHHHHHHHHHHcccCCCCC--CCCHHHHHH
Q 005864 630 PR--LPLPSRNIQDKLISILEVALLCLEESPES--RPTMQTVCQ 669 (673)
Q Consensus 630 ~~--~~~~~~~~~~~~~~l~~li~~cl~~dp~~--Rps~~~v~~ 669 (673)
.. +..+. ....+.++.+++.+||..+|.+ ||+++|+++
T Consensus 288 ~~~~~~~p~--~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~ 329 (410)
T 3v8s_A 288 HKNSLTFPD--DNDISKEAKNLICAFLTDREVRLGRNGVEEIKR 329 (410)
T ss_dssp HHHHCCCCT--TCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHT
T ss_pred ccccccCCC--cccccHHHHHHHHHHccChhhhCCCCCHHHHhc
Confidence 11 11111 1122345889999999999988 999999975
No 60
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=100.00 E-value=3e-42 Score=350.35 Aligned_cols=257 Identities=23% Similarity=0.371 Sum_probs=200.3
Q ss_pred hcCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
.++|.+.+.||+|+||+||+|.+. ..+|+|+++.... .....+.+.+|++++++++||||+++++++. .+..++||
T Consensus 35 ~~~~~~~~~lG~G~~g~Vy~~~~~--~~~avk~~k~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-~~~~~lv~ 110 (307)
T 3lb7_A 35 ASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDP-TPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIVT 110 (307)
T ss_dssp TTSCCEEEEEEECSSCEEEEEESS--SEEEEEECCCSSC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEE
T ss_pred ccceEEEeEecCCCCeEEEEEEEC--CEEEEEEEecCCC-CHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc-cCcEEEEE
Confidence 367999999999999999999874 3689998875432 3345678999999999999999999999875 45588999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
||+++|+|.+++.... ..+++.++..++.|++.||+|||+. +|+||||||+||++++++.+||+|||++......
T Consensus 111 e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~DFg~a~~~~~~ 185 (307)
T 3lb7_A 111 QWCEGSSLYKHLHVQE--TKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRW 185 (307)
T ss_dssp ECCSSCBHHHHHHTSC--CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCSSSEEECTTSCEEECCCCSSCC----
T ss_pred ecCCCCcHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHhC---CEeeCCCChhhEEEcCCCCEEEccCCCceecccc
Confidence 9999999999997653 4589999999999999999999999 9999999999999999999999999999765321
Q ss_pred --CCCceecccccccccccccc---cCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCC
Q 005864 561 --SSNWTEFAGTFGYVAPELAY---TMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLP 635 (673)
Q Consensus 561 --~~~~~~~~~~~~y~aPE~~~---~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (673)
........||+.|+|||.+. +..++.++||||||+++|||++|+.||......+.... ........+.+.
T Consensus 186 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~---~~~~~~~~~~~~-- 260 (307)
T 3lb7_A 186 SGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIF---MVGRGYASPDLS-- 260 (307)
T ss_dssp --------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHH---HHHHTCCCCCST--
T ss_pred cccccccCCCCCcceECcceeeccCCCCCCchhhHHHHHHHHHHHHhCCCCCccCCcHHHHHH---HHhcCCCCcchh--
Confidence 22234567899999999986 66788999999999999999999999974332111000 000011111111
Q ss_pred CcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 636 SRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 636 ~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
......+..+.+++.+||+.||++|||+.|+++.|+
T Consensus 261 -~~~~~~~~~l~~li~~~l~~~p~~RPs~~~il~~l~ 296 (307)
T 3lb7_A 261 -KLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIE 296 (307)
T ss_dssp -TSCSSSCHHHHHHHHHHSCSSSTTSCCHHHHHHHHH
T ss_pred -hhhcCCcHHHHHHHHHHhhCChhhCcCHHHHHHHHH
Confidence 111123346899999999999999999999999885
No 61
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=100.00 E-value=2.9e-42 Score=360.33 Aligned_cols=251 Identities=20% Similarity=0.274 Sum_probs=207.1
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
+.|++.+.||+|+||+||+|... +|+.||+|.+..... .....+.+|++++..++||||+++++++.+++..++||
T Consensus 51 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~ 127 (387)
T 1kob_A 51 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYP---LDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLIL 127 (387)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSH---HHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEE
T ss_pred cceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccch---hhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEE
Confidence 57899999999999999999775 689999999875432 23567889999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCC--CCceEEecccceeecC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSS--EYEARVSDFGIAKFLK 558 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~--~~~~kl~Dfg~~~~~~ 558 (673)
||+++|+|.+++.... ..+++..+..++.||+.||+|||+. +|+||||||+||+++. ++.+||+|||++....
T Consensus 128 E~~~gg~L~~~l~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~ 202 (387)
T 1kob_A 128 EFLSGGELFDRIAAED--YKMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKLN 202 (387)
T ss_dssp ECCCCCBHHHHTTCTT--CCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCTTCEECC
T ss_pred EcCCCCcHHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccchHHeEEecCCCCceEEEecccceecC
Confidence 9999999999997653 4589999999999999999999999 9999999999999974 4679999999998875
Q ss_pred CCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcc
Q 005864 559 PGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRN 638 (673)
Q Consensus 559 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (673)
... ......||+.|+|||++.+..++.++||||+||++|||++|+.||......+. ...+.......+...
T Consensus 203 ~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~--------~~~i~~~~~~~~~~~ 273 (387)
T 1kob_A 203 PDE-IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLET--------LQNVKRCDWEFDEDA 273 (387)
T ss_dssp TTS-CEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHH--------HHHHHHCCCCCCSST
T ss_pred CCc-ceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHHH--------HHHHHhCCCCCCccc
Confidence 432 33456799999999999999999999999999999999999999974332111 111111111122222
Q ss_pred hHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 639 IQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 639 ~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
....+.++.+++.+||+.||++|||+.|+++
T Consensus 274 ~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~ 304 (387)
T 1kob_A 274 FSSVSPEAKDFIKNLLQKEPRKRLTVHDALE 304 (387)
T ss_dssp TTTSCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred cccCCHHHHHHHHHHcCCChhHCcCHHHHhh
Confidence 2234456899999999999999999999986
No 62
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=100.00 E-value=1.1e-42 Score=356.34 Aligned_cols=250 Identities=25% Similarity=0.351 Sum_probs=187.6
Q ss_pred cceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccC-CCcccceeeeeecCCeeeEEEeccc
Q 005864 407 EQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIR-HRNIVKFYGFCSHPRHSFLVYECLE 484 (673)
Q Consensus 407 ~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~ 484 (673)
.+.||+|+||+||+|... +|+.||||++... ....+.+|+.++..++ ||||+++++++.+++..++||||++
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~------~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~ 89 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR------MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLN 89 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG------GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCC
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh------hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccC
Confidence 478999999999999775 6899999998643 2456778999999997 9999999999999999999999999
Q ss_pred CCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCC---ceEEecccceeecCCCC
Q 005864 485 RGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEY---EARVSDFGIAKFLKPGS 561 (673)
Q Consensus 485 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~---~~kl~Dfg~~~~~~~~~ 561 (673)
+|+|.+++... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++ .+||+|||+++......
T Consensus 90 ~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~ 163 (325)
T 3kn6_A 90 GGELFERIKKK---KHFSETEASYIMRKLVSAVSHMHDV---GVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDN 163 (325)
T ss_dssp SCBHHHHHHHC---SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEC----CEEEECCCTTCEECCC--
T ss_pred CCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CCeecCCCHHHEEEecCCCcccEEEeccccceecCCCC
Confidence 99999999875 3589999999999999999999999 999999999999998765 89999999998776655
Q ss_pred CCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcchHH
Q 005864 562 SNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRNIQD 641 (673)
Q Consensus 562 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (673)
.......||+.|+|||.+.+..++.++||||+|+++|||++|+.||........ ..........+.......+...+..
T Consensus 164 ~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~ 242 (325)
T 3kn6_A 164 QPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLT-CTSAVEIMKKIKKGDFSFEGEAWKN 242 (325)
T ss_dssp --------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC--------CCCHHHHHHHHTTTCCCCCSHHHHT
T ss_pred CcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccc-cccHHHHHHHHHcCCCCCCcccccC
Confidence 555667789999999999999999999999999999999999999975332111 0111222334444455544444455
Q ss_pred HHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 642 KLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 642 ~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.+.++.+++.+||+.||++|||++|+++
T Consensus 243 ~s~~~~~li~~~L~~dP~~Rpt~~ell~ 270 (325)
T 3kn6_A 243 VSQEAKDLIQGLLTVDPNKRLKMSGLRY 270 (325)
T ss_dssp SCHHHHHHHHHHHCCCTTTCCCTTTSTT
T ss_pred CCHHHHHHHHHHCCCChhHCCCHHHHhc
Confidence 6678999999999999999999998864
No 63
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=100.00 E-value=5e-42 Score=366.81 Aligned_cols=249 Identities=24% Similarity=0.402 Sum_probs=209.6
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
++|.+.+.||+|+||.||+|++. +|+.||||++.............+.+|+.+++.++||||+++++++..++..++||
T Consensus 16 ~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~ 95 (476)
T 2y94_A 16 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVM 95 (476)
T ss_dssp TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence 56889999999999999999875 79999999997654444445678999999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
||+++|+|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||+|||++......
T Consensus 96 E~~~gg~L~~~l~~~---~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~ 169 (476)
T 2y94_A 96 EYVSGGELFDYICKN---GRLDEKESRRLFQQILSGVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG 169 (476)
T ss_dssp ECCSSEEHHHHTTSS---SSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEECTTCCEEECCCSSCEECCTT
T ss_pred eCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CCCcccccHHHEEEecCCCeEEEeccchhhcccc
Confidence 999999999999765 3589999999999999999999999 9999999999999999999999999999877543
Q ss_pred CCCceecccccccccccccccCCc-CcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcch
Q 005864 561 SSNWTEFAGTFGYVAPELAYTMKV-TEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRNI 639 (673)
Q Consensus 561 ~~~~~~~~~~~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (673)
.......||+.|+|||.+.+..+ +.++||||+||++|||++|+.||+.... ......+.+.....+..
T Consensus 170 -~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~--------~~~~~~i~~~~~~~p~~-- 238 (476)
T 2y94_A 170 -EFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHV--------PTLFKKICDGIFYTPQY-- 238 (476)
T ss_dssp -CCBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSS--------HHHHHHHHTTCCCCCTT--
T ss_pred -ccccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCH--------HHHHHHHhcCCcCCCcc--
Confidence 23345679999999999988765 6899999999999999999999974321 11222233333333322
Q ss_pred HHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 640 QDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 640 ~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.+.++.+++.+||+.||++|||++|+++
T Consensus 239 --~s~~~~~Li~~~L~~dP~~Rpt~~eil~ 266 (476)
T 2y94_A 239 --LNPSVISLLKHMLQVDPMKRATIKDIRE 266 (476)
T ss_dssp --CCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred --CCHHHHHHHHHHcCCCchhCcCHHHHHh
Confidence 2345889999999999999999999985
No 64
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=100.00 E-value=1e-42 Score=361.88 Aligned_cols=249 Identities=22% Similarity=0.249 Sum_probs=197.5
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHH-HhccCCCcccceeeeeecCCeeeEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKA-LTEIRHRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~-l~~l~h~niv~l~~~~~~~~~~~lv 479 (673)
++|++.+.||+|+||+||+|+.+ +++.||+|++++.........+.+.+|..+ ++.++||||+++++++.+.+..++|
T Consensus 38 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~lv 117 (373)
T 2r5t_A 38 SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFV 117 (373)
T ss_dssp GGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEEE
Confidence 56889999999999999999775 588999999977654444445667777777 5678999999999999999999999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCC
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKP 559 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~ 559 (673)
|||+++|+|.+++...+ .+++..+..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 118 ~E~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~ 191 (373)
T 2r5t_A 118 LDYINGGELFYHLQRER---CFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLCKENIE 191 (373)
T ss_dssp EECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCBCGGGBC
T ss_pred EeCCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEeeCcccccccc
Confidence 99999999999998653 478889999999999999999999 999999999999999999999999999986544
Q ss_pred CCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcch
Q 005864 560 GSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRNI 639 (673)
Q Consensus 560 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (673)
.........||+.|+|||++.+..++.++|||||||++|||++|+.||...... .....++......+..
T Consensus 192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~--------~~~~~i~~~~~~~~~~-- 261 (373)
T 2r5t_A 192 HNSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTA--------EMYDNILNKPLQLKPN-- 261 (373)
T ss_dssp CCCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHH--------HHHHHHHHSCCCCCSS--
T ss_pred CCCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHH--------HHHHHHHhcccCCCCC--
Confidence 444455678999999999999999999999999999999999999999743221 1222233333333322
Q ss_pred HHHHHHHHHHHHHcccCCCCCCCCHHHHH
Q 005864 640 QDKLISILEVALLCLEESPESRPTMQTVC 668 (673)
Q Consensus 640 ~~~~~~l~~li~~cl~~dp~~Rps~~~v~ 668 (673)
.+.++.+++.+||+.||++||++.+.+
T Consensus 262 --~~~~~~~li~~lL~~dp~~R~~~~~~~ 288 (373)
T 2r5t_A 262 --ITNSARHLLEGLLQKDRTKRLGAKDDF 288 (373)
T ss_dssp --SCHHHHHHHHHHTCSSGGGSTTTTTTH
T ss_pred --CCHHHHHHHHHHcccCHHhCCCCCCCH
Confidence 234588999999999999999985433
No 65
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=100.00 E-value=2.1e-42 Score=348.80 Aligned_cols=261 Identities=23% Similarity=0.335 Sum_probs=200.7
Q ss_pred cCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEEe
Q 005864 402 KNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVYE 481 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 481 (673)
++|++.+.||+|+||+||+|+..+|+.||+|++...... ....+.+.+|++++++++||||+++++++..++..++|||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 80 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKED-EGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFE 80 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGG-GCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEE
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccc-cccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEE
Confidence 468899999999999999998888999999998654322 2234678899999999999999999999999999999999
Q ss_pred cccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCCC
Q 005864 482 CLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPGS 561 (673)
Q Consensus 482 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~ 561 (673)
|+++ +|.+++.... ..+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++.......
T Consensus 81 ~~~~-~l~~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 154 (288)
T 1ob3_A 81 HLDQ-DLKKLLDVCE--GGLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGLARAFGIPV 154 (288)
T ss_dssp CCSE-EHHHHHHTST--TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC--
T ss_pred ecCC-CHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEeECccccccCccc
Confidence 9986 9999987653 4588899999999999999999999 99999999999999999999999999998765444
Q ss_pred CCceecccccccccccccccC-CcCcchhHHHHHHHHHHHHhCCCCCcccccccccccc-------cccccc-----ccc
Q 005864 562 SNWTEFAGTFGYVAPELAYTM-KVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSN-------MNLSLN-----EIL 628 (673)
Q Consensus 562 ~~~~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~-------~~~~~~-----~~~ 628 (673)
.......+|+.|+|||.+.+. .++.++||||+||++|||++|+.||......+..... ....+. ...
T Consensus 155 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (288)
T 1ob3_A 155 RKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKY 234 (288)
T ss_dssp -------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTC
T ss_pred cccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHCCCChhhchhhhccccc
Confidence 444556789999999998764 5899999999999999999999999753321110000 000000 001
Q ss_pred CCCCCCC-----CcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 629 DPRLPLP-----SRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 629 ~~~~~~~-----~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
++.+... .......+.++.+++.+||+.||++|||++|+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 280 (288)
T 1ob3_A 235 DPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE 280 (288)
T ss_dssp CTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 1111100 0011123456889999999999999999999985
No 66
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=100.00 E-value=1.6e-42 Score=355.00 Aligned_cols=251 Identities=25% Similarity=0.340 Sum_probs=202.1
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
++|++.+.||+|+||+||+|... +++.||||++...... ...+.+.+|+.+++.++||||+++++++.+++..++||
T Consensus 7 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~ 84 (323)
T 3tki_A 7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAV--DCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFL 84 (323)
T ss_dssp TCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC---------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEccccc--chHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEE
Confidence 57899999999999999999775 7999999998654222 23467889999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
||+++|+|.+++... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++..+...
T Consensus 85 e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 158 (323)
T 3tki_A 85 EYCSGGELFDRIEPD---IGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYN 158 (323)
T ss_dssp ECCTTEEGGGGSBTT---TBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEET
T ss_pred EcCCCCcHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CccccccchHHEEEeCCCCEEEEEeeccceeccC
Confidence 999999999999765 3588999999999999999999999 9999999999999999999999999999876432
Q ss_pred C--CCceecccccccccccccccCCc-CcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCc
Q 005864 561 S--SNWTEFAGTFGYVAPELAYTMKV-TEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSR 637 (673)
Q Consensus 561 ~--~~~~~~~~~~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (673)
. .......||+.|+|||++.+..+ +.++||||+||++|||++|+.||+....... ............ .
T Consensus 159 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~-------~~~~~~~~~~~~--~ 229 (323)
T 3tki_A 159 NRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQ-------EYSDWKEKKTYL--N 229 (323)
T ss_dssp TEECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSH-------HHHHHHTTCTTS--T
T ss_pred CcccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHH-------HHHHHhcccccC--C
Confidence 2 22345679999999999987775 7799999999999999999999974322110 011111111111 1
Q ss_pred chHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 638 NIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 638 ~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.+...+..+.+++.+||+.||++|||++|+++
T Consensus 230 ~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~ 261 (323)
T 3tki_A 230 PWKKIDSAPLALLHKILVENPSARITIPDIKK 261 (323)
T ss_dssp TGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred ccccCCHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 12233456889999999999999999999975
No 67
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=100.00 E-value=2.7e-42 Score=354.00 Aligned_cols=251 Identities=22% Similarity=0.326 Sum_probs=196.5
Q ss_pred hcCCCccceeccCCcEEEEEEEe----CCCCEEEEEeeccchhh-hhHHHHHHHHHHHHHhccCCCcccceeeeeecCCe
Q 005864 401 TKNFDAEQCIGIGGQASVYRGEL----PSGEVVAVKKFHSLLLS-EISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRH 475 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~----~~~~~vavK~~~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~ 475 (673)
.++|++.+.||+|+||.||+|+. .+|+.||+|+++..... .......+.+|+.+++.++||||+++++++..++.
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 95 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK 95 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence 35789999999999999999976 47999999999764322 22345668899999999999999999999999999
Q ss_pred eeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEeccccee
Q 005864 476 SFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAK 555 (673)
Q Consensus 476 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~ 555 (673)
.++||||+++|+|.+++...+ .+++..+..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++
T Consensus 96 ~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~ 169 (327)
T 3a62_A 96 LYLILEYLSGGELFMQLEREG---IFMEDTACFYLAEISMALGHLHQK---GIIYRDLKPENIMLNHQGHVKLTDFGLCK 169 (327)
T ss_dssp EEEEEECCTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTSCEEECCCSCC-
T ss_pred EEEEEeCCCCCcHHHHHHhCC---CCCHHHHHHHHHHHHHHHHHHHhC---CEEcccCCHHHeEECCCCcEEEEeCCccc
Confidence 999999999999999998653 478899999999999999999999 99999999999999999999999999998
Q ss_pred ecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCC
Q 005864 556 FLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLP 635 (673)
Q Consensus 556 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (673)
.............||+.|+|||.+.+..++.++||||||+++|||++|+.||...... .....+.......+
T Consensus 170 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~--------~~~~~i~~~~~~~p 241 (327)
T 3a62_A 170 ESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRK--------KTIDKILKCKLNLP 241 (327)
T ss_dssp ---------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH--------HHHHHHHHTCCCCC
T ss_pred ccccCCccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHH--------HHHHHHHhCCCCCC
Confidence 6544433344567999999999999989999999999999999999999999743221 11222222333333
Q ss_pred CcchHHHHHHHHHHHHHcccCCCCCCC-----CHHHHHH
Q 005864 636 SRNIQDKLISILEVALLCLEESPESRP-----TMQTVCQ 669 (673)
Q Consensus 636 ~~~~~~~~~~l~~li~~cl~~dp~~Rp-----s~~~v~~ 669 (673)
.. .+.++.+++.+||+.||++|| ++.|+++
T Consensus 242 ~~----~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~ 276 (327)
T 3a62_A 242 PY----LTQEARDLLKKLLKRNAASRLGAGPGDAGEVQA 276 (327)
T ss_dssp TT----SCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred CC----CCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHc
Confidence 22 234588999999999999999 7788875
No 68
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.8e-42 Score=351.22 Aligned_cols=251 Identities=22% Similarity=0.325 Sum_probs=197.8
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhh-----------------------hHHHHHHHHHHHHHhc
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSE-----------------------ISVQREFLNEIKALTE 457 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~-----------------------~~~~~~~~~e~~~l~~ 457 (673)
++|++.+.||+|+||+||+|... +|+.||||++....... ....+.+.+|++++++
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~ 92 (298)
T 2zv2_A 13 NQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKK 92 (298)
T ss_dssp TTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHT
T ss_pred cceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHh
Confidence 57899999999999999999764 68999999986543211 1124568899999999
Q ss_pred cCCCcccceeeeeec--CCeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCC
Q 005864 458 IRHRNIVKFYGFCSH--PRHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISS 535 (673)
Q Consensus 458 l~h~niv~l~~~~~~--~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~ 535 (673)
++||||+++++++.+ .+..++||||+++|+|.+++.. ..+++..+..++.|+++||+|||+. +|+||||||
T Consensus 93 l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp 165 (298)
T 2zv2_A 93 LDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL----KPLSEDQARFYFQDLIKGIEYLHYQ---KIIHRDIKP 165 (298)
T ss_dssp CCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS----SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCG
T ss_pred CCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCH
Confidence 999999999999986 5678999999999999887543 3589999999999999999999999 999999999
Q ss_pred CCeEeCCCCceEEecccceeecCCCCCCceecccccccccccccccCC---cCcchhHHHHHHHHHHHHhCCCCCccccc
Q 005864 536 KNVLLSSEYEARVSDFGIAKFLKPGSSNWTEFAGTFGYVAPELAYTMK---VTEKCDVYSFGVLALEVIKGKHPRDFISL 612 (673)
Q Consensus 536 ~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---~~~~~Dv~slG~il~el~~g~~p~~~~~~ 612 (673)
+||+++.++.+||+|||++..............||+.|+|||.+.+.. ++.++||||||+++|||++|+.||.....
T Consensus 166 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~ 245 (298)
T 2zv2_A 166 SNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDERI 245 (298)
T ss_dssp GGEEECTTSCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred HHEEECCCCCEEEecCCCccccccccccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCccH
Confidence 999999999999999999998765544445567999999999987655 47889999999999999999999974322
Q ss_pred ccccccccccccccccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 613 LSSSSSNMNLSLNEILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
... ...+.......+. ....+..+.+++.+||+.||++|||++|+++
T Consensus 246 ~~~--------~~~~~~~~~~~~~--~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~ 292 (298)
T 2zv2_A 246 MCL--------HSKIKSQALEFPD--QPDIAEDLKDLITRMLDKNPESRIVVPEIKL 292 (298)
T ss_dssp HHH--------HHHHHHCCCCCCS--SSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred HHH--------HHHHhcccCCCCC--ccccCHHHHHHHHHHhhcChhhCCCHHHHhc
Confidence 111 0111111111111 0122345889999999999999999999875
No 69
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=100.00 E-value=2e-42 Score=345.83 Aligned_cols=253 Identities=28% Similarity=0.450 Sum_probs=194.5
Q ss_pred cCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhh-hHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSE-ISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
++|++.+.||+|+||+||+|.+ .|+.||||++....... ....+.+.+|+++++.++||||+++++++.+++..++||
T Consensus 7 ~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 85 (271)
T 3dtc_A 7 AELTLEEIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVM 85 (271)
T ss_dssp TSEEEEEEEEEETTEEEEEEEE-TTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEE
T ss_pred hheeeeeeeccCCCeEEEEEEE-cCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEE
Confidence 5788899999999999999987 48999999987543322 233577899999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCC--------CCceEEeccc
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSS--------EYEARVSDFG 552 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~--------~~~~kl~Dfg 552 (673)
||+++++|.+++... .+++..+..++.|+++||+|||+++..+++||||||+||+++. ++.+||+|||
T Consensus 86 e~~~~~~L~~~~~~~----~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg 161 (271)
T 3dtc_A 86 EFARGGPLNRVLSGK----RIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFG 161 (271)
T ss_dssp ECCTTEEHHHHHTSS----CCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCC
T ss_pred EcCCCCCHHHHhhcC----CCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCC
Confidence 999999999999643 4889999999999999999999992222999999999999986 6789999999
Q ss_pred ceeecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCC-
Q 005864 553 IAKFLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPR- 631 (673)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~- 631 (673)
++....... .....|++.|+|||.+.+..++.++||||+|+++|||++|+.||......... .......
T Consensus 162 ~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~--------~~~~~~~~ 231 (271)
T 3dtc_A 162 LAREWHRTT--KMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVA--------YGVAMNKL 231 (271)
T ss_dssp C---------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHHH--------HHHHTSCC
T ss_pred ccccccccc--ccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHH--------HhhhcCCC
Confidence 998664332 23457899999999999989999999999999999999999999743321110 1111111
Q ss_pred -CCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhhC
Q 005864 632 -LPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLCK 673 (673)
Q Consensus 632 -~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~~ 673 (673)
.+.+. ..+..+.+++.+||+.||++|||++|+++.|++
T Consensus 232 ~~~~~~----~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~ 270 (271)
T 3dtc_A 232 ALPIPS----TCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTT 270 (271)
T ss_dssp CCCCCT----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC
T ss_pred CCCCCc----ccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhc
Confidence 11111 223458899999999999999999999999974
No 70
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=3.4e-42 Score=356.95 Aligned_cols=261 Identities=23% Similarity=0.278 Sum_probs=207.5
Q ss_pred HHHhcCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhh--hhHHHHHHHHHHHHHhccCCCcccceeeeeecCC
Q 005864 398 IRATKNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLS--EISVQREFLNEIKALTEIRHRNIVKFYGFCSHPR 474 (673)
Q Consensus 398 ~~~~~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~ 474 (673)
....++|++.+.||+|+||+||+|.. .+++.||+|++...... .....+.+.+|+.++++++||||+++++++.+++
T Consensus 22 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~ 101 (345)
T 3hko_A 22 LELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQ 101 (345)
T ss_dssp HHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred hhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCC
Confidence 45567899999999999999999976 46889999998754322 2345678999999999999999999999999999
Q ss_pred eeeEEEecccCCChHHHHhcCC-------------------------------------CCccchHHHHHHHHHHHHHHH
Q 005864 475 HSFLVYECLERGSLAEILSNDG-------------------------------------SIKEFSWIVRTNVIKSVANAL 517 (673)
Q Consensus 475 ~~~lv~e~~~~gsL~~~l~~~~-------------------------------------~~~~l~~~~~~~i~~~i~~~l 517 (673)
..++||||+++|+|.+++.... ....+++..+..++.|++.||
T Consensus 102 ~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l 181 (345)
T 3hko_A 102 YICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSAL 181 (345)
T ss_dssp EEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHH
Confidence 9999999999999999985210 012357788899999999999
Q ss_pred HHHhhcCCCCeEEecCCCCCeEeCCCC--ceEEecccceeecCCCCC----Cceeccccccccccccccc--CCcCcchh
Q 005864 518 SYMHHDCFPPIVHRDISSKNVLLSSEY--EARVSDFGIAKFLKPGSS----NWTEFAGTFGYVAPELAYT--MKVTEKCD 589 (673)
Q Consensus 518 ~~LH~~~~~~ivH~dlk~~Nill~~~~--~~kl~Dfg~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~--~~~~~~~D 589 (673)
+|||+. +|+||||||+||+++.++ .+||+|||++..+..... ......||+.|+|||.+.+ ..++.++|
T Consensus 182 ~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~D 258 (345)
T 3hko_A 182 HYLHNQ---GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCD 258 (345)
T ss_dssp HHHHHT---TEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHH
T ss_pred HHHHHC---CccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHH
Confidence 999999 999999999999998776 899999999987643221 2345678999999999865 67899999
Q ss_pred HHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 590 VYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 590 v~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
|||||+++|||++|+.||...... .....+.......+.......+..+.+++.+||+.||.+|||+.|+++
T Consensus 259 iwslG~il~el~~g~~pf~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~ 330 (345)
T 3hko_A 259 AWSAGVLLHLLLMGAVPFPGVNDA--------DTISQVLNKKLCFENPNYNVLSPLARDLLSNLLNRNVDERFDAMRALQ 330 (345)
T ss_dssp HHHHHHHHHHHHHSSCSSCCSSHH--------HHHHHHHHCCCCTTSGGGGGSCHHHHHHHHHHSCSCTTTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCChH--------HHHHHHHhcccccCCcccccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 999999999999999999743322 122223333333333333344567899999999999999999999986
No 71
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=100.00 E-value=8.6e-43 Score=353.05 Aligned_cols=259 Identities=26% Similarity=0.385 Sum_probs=202.2
Q ss_pred cCCCccceeccCCcEEEEEEEe-----CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeec--CC
Q 005864 402 KNFDAEQCIGIGGQASVYRGEL-----PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSH--PR 474 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~ 474 (673)
++|++.+.||+|+||+||+|++ .+|+.||||++... .....+.+.+|++++.+++||||+++++++.. ..
T Consensus 10 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 86 (295)
T 3ugc_A 10 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS---TEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRR 86 (295)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCC---CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHT
T ss_pred HHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccC---CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCC
Confidence 5788999999999999999974 36889999998754 23346789999999999999999999999865 35
Q ss_pred eeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccce
Q 005864 475 HSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIA 554 (673)
Q Consensus 475 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~ 554 (673)
..++||||+++|+|.+++.... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 87 ~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~~ 161 (295)
T 3ugc_A 87 NLKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLT 161 (295)
T ss_dssp SCEEEEECCTTCBHHHHHHHCG--GGCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCSC
T ss_pred ceEEEEEeCCCCCHHHHHHhcc--cccCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHhhEEEcCCCeEEEccCccc
Confidence 6899999999999999998753 4589999999999999999999999 9999999999999999999999999999
Q ss_pred eecCCCCCC---ceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccc--ccccc-----cccc
Q 005864 555 KFLKPGSSN---WTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSS--SSSNM-----NLSL 624 (673)
Q Consensus 555 ~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~--~~~~~-----~~~~ 624 (673)
......... .....++..|+|||.+.+..++.++||||||+++|||++|..|+........ ..... ....
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (295)
T 3ugc_A 162 KVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHL 241 (295)
T ss_dssp C-------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHH
T ss_pred ccccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHH
Confidence 876543221 2234567789999999999999999999999999999999999864321100 00000 0000
Q ss_pred cccc--CCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 625 NEIL--DPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 625 ~~~~--~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
.+.+ ..+.+.+. ..+.++.+++.+||+.||++|||++|+++.|+
T Consensus 242 ~~~~~~~~~~~~~~----~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~ 287 (295)
T 3ugc_A 242 IELLKNNGRLPRPD----GCPDEIYMIMTECWNNNVNQRPSFRDLALRVD 287 (295)
T ss_dssp HHHHHTTCCCCCCT----TCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHH
T ss_pred HHHHhccCcCCCCc----CcCHHHHHHHHHHcCCChhhCCCHHHHHHHHH
Confidence 1111 11222222 23346899999999999999999999999986
No 72
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=100.00 E-value=1.1e-42 Score=368.03 Aligned_cols=262 Identities=20% Similarity=0.269 Sum_probs=210.7
Q ss_pred HHHHHHHhcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeec
Q 005864 394 YEEIIRATKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSH 472 (673)
Q Consensus 394 ~~~~~~~~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~ 472 (673)
+.++....++|++.+.||+|+||+||+|+.. +++.||+|++.+...........+.+|+.++..++||||++++++|.+
T Consensus 66 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~ 145 (437)
T 4aw2_A 66 VKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQD 145 (437)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred hhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee
Confidence 3444555689999999999999999999876 488999999976433333334458899999999999999999999999
Q ss_pred CCeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEeccc
Q 005864 473 PRHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFG 552 (673)
Q Consensus 473 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg 552 (673)
++..++||||+++|+|.+++.... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 146 ~~~~~lV~Ey~~gg~L~~~l~~~~--~~l~e~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILl~~~g~vkL~DFG 220 (437)
T 4aw2_A 146 DNNLYLVMDYYVGGDLLTLLSKFE--DRLPEEMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMNGHIRLADFG 220 (437)
T ss_dssp SSEEEEEECCCTTCBHHHHHHTTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCT
T ss_pred CCEEEEEEecCCCCcHHHHHHHcc--CCCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeeEcCCCCEEEcchh
Confidence 999999999999999999998743 4589999999999999999999999 99999999999999999999999999
Q ss_pred ceeecCCCCCC-ceecccccccccccccc-----cCCcCcchhHHHHHHHHHHHHhCCCCCccccccccccccccccccc
Q 005864 553 IAKFLKPGSSN-WTEFAGTFGYVAPELAY-----TMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNE 626 (673)
Q Consensus 553 ~~~~~~~~~~~-~~~~~~~~~y~aPE~~~-----~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~ 626 (673)
+++........ .....||+.|+|||++. ...++.++|||||||++|||++|+.||......+. ...
T Consensus 221 la~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~~--------~~~ 292 (437)
T 4aw2_A 221 SCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVET--------YGK 292 (437)
T ss_dssp TCEECCTTSCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHH--------HHH
T ss_pred hhhhcccCCCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhHH--------HHh
Confidence 99876544332 23467999999999987 56789999999999999999999999974332211 111
Q ss_pred ccCC--CCCCCCcchHHHHHHHHHHHHHcccCCCCC--CCCHHHHHH
Q 005864 627 ILDP--RLPLPSRNIQDKLISILEVALLCLEESPES--RPTMQTVCQ 669 (673)
Q Consensus 627 ~~~~--~~~~~~~~~~~~~~~l~~li~~cl~~dp~~--Rps~~~v~~ 669 (673)
++.. ++..+. .....+.++.+++.+||..+|++ ||+++|+++
T Consensus 293 i~~~~~~~~~p~-~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~ 338 (437)
T 4aw2_A 293 IMNHKERFQFPT-QVTDVSENAKDLIRRLICSREHRLGQNGIEDFKK 338 (437)
T ss_dssp HHTHHHHCCCCS-SCCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHT
T ss_pred hhhccccccCCc-ccccCCHHHHHHHHHHhcccccccCCCCHHHHhC
Confidence 1111 111111 11123345889999999988888 999999875
No 73
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=100.00 E-value=3.1e-42 Score=359.41 Aligned_cols=246 Identities=23% Similarity=0.295 Sum_probs=199.5
Q ss_pred cceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEEecccC
Q 005864 407 EQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVYECLER 485 (673)
Q Consensus 407 ~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~ 485 (673)
.+.||+|+||.||+|.. .+|+.||+|+++.... ...+.+.+|++++.+++||||+++++++.+.+..++||||+++
T Consensus 94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~ 170 (373)
T 2x4f_A 94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGM---KDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDG 170 (373)
T ss_dssp EEECC-----CEEEEEETTTCCEEEEEEEECCSH---HHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred ceEEecCcCEEEEEEEEcCCCcEEEEEEEccccc---ccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCC
Confidence 56899999999999976 4699999999876432 2457889999999999999999999999999999999999999
Q ss_pred CChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEe--CCCCceEEecccceeecCCCCCC
Q 005864 486 GSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLL--SSEYEARVSDFGIAKFLKPGSSN 563 (673)
Q Consensus 486 gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill--~~~~~~kl~Dfg~~~~~~~~~~~ 563 (673)
|+|.+++.... ..+++..+..++.||++||+|||+. +|+||||||+||++ +.++.+||+|||+++...... .
T Consensus 171 ~~L~~~l~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~-~ 244 (373)
T 2x4f_A 171 GELFDRIIDES--YNLTELDTILFMKQICEGIRHMHQM---YILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPRE-K 244 (373)
T ss_dssp CEEHHHHHHTG--GGCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTC-B
T ss_pred CcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEecCCCCcEEEEeCCCceecCCcc-c
Confidence 99999987643 4588999999999999999999999 99999999999999 567899999999999875432 2
Q ss_pred ceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcchHHHH
Q 005864 564 WTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRNIQDKL 643 (673)
Q Consensus 564 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (673)
.....||+.|+|||++.+..++.++|||||||++|||++|+.||...... .....+.......+...+...+
T Consensus 245 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~--------~~~~~i~~~~~~~~~~~~~~~~ 316 (373)
T 2x4f_A 245 LKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDA--------ETLNNILACRWDLEDEEFQDIS 316 (373)
T ss_dssp CCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHH--------HHHHHHHHTCCCSCSGGGTTSC
T ss_pred cccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHH--------HHHHHHHhccCCCChhhhccCC
Confidence 34457999999999999889999999999999999999999999743221 1122222223222223333445
Q ss_pred HHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 644 ISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 644 ~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.++.+++.+||+.||.+|||++|+++
T Consensus 317 ~~~~~li~~~L~~dp~~Rps~~e~l~ 342 (373)
T 2x4f_A 317 EEAKEFISKLLIKEKSWRISASEALK 342 (373)
T ss_dssp HHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 67899999999999999999999986
No 74
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=100.00 E-value=2.1e-42 Score=358.27 Aligned_cols=257 Identities=22% Similarity=0.400 Sum_probs=209.1
Q ss_pred HhcCCCccceeccCCcEEEEEEEeC------CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecC
Q 005864 400 ATKNFDAEQCIGIGGQASVYRGELP------SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHP 473 (673)
Q Consensus 400 ~~~~~~~~~~ig~G~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~ 473 (673)
..++|++.+.||+|+||.||+|+.. +++.||||.++... .....+.+.+|+.++++++||||+++++++.++
T Consensus 45 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~ 122 (343)
T 1luf_A 45 PRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA--SADMQADFQREAALMAEFDNPNIVKLLGVCAVG 122 (343)
T ss_dssp CGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS
T ss_pred cHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEecccc--CHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccC
Confidence 4578999999999999999999774 35889999987542 233567899999999999999999999999999
Q ss_pred CeeeEEEecccCCChHHHHhcCCC---------------------CccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEec
Q 005864 474 RHSFLVYECLERGSLAEILSNDGS---------------------IKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRD 532 (673)
Q Consensus 474 ~~~~lv~e~~~~gsL~~~l~~~~~---------------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~d 532 (673)
+..++||||+++|+|.+++..... ...+++.+++.++.||++||+|||++ +|+|||
T Consensus 123 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~---~ivH~D 199 (343)
T 1luf_A 123 KPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---KFVHRD 199 (343)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSC
T ss_pred CceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCC
Confidence 999999999999999999986431 14689999999999999999999999 999999
Q ss_pred CCCCCeEeCCCCceEEecccceeecCCCC--CCceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcc
Q 005864 533 ISSKNVLLSSEYEARVSDFGIAKFLKPGS--SNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDF 609 (673)
Q Consensus 533 lk~~Nill~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~ 609 (673)
|||+||+++.++.+||+|||++....... .......+++.|+|||.+.+..++.++||||||+++|||++ |..||..
T Consensus 200 lkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~ 279 (343)
T 1luf_A 200 LATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYG 279 (343)
T ss_dssp CSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTT
T ss_pred CCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCC
Confidence 99999999999999999999998654322 12234567889999999998899999999999999999999 9999874
Q ss_pred cccccccccccccccccccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 610 ISLLSSSSSNMNLSLNEILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
....+ ....+.+....... ...+..+.+++.+||+.||++|||+.++++.|+
T Consensus 280 ~~~~~--------~~~~~~~~~~~~~~---~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~ 331 (343)
T 1luf_A 280 MAHEE--------VIYYVRDGNILACP---ENCPLELYNLMRLCWSKLPADRPSFCSIHRILQ 331 (343)
T ss_dssp SCHHH--------HHHHHHTTCCCCCC---TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CChHH--------HHHHHhCCCcCCCC---CCCCHHHHHHHHHHcccCcccCCCHHHHHHHHH
Confidence 32211 11112222221111 122345889999999999999999999999986
No 75
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=100.00 E-value=5e-42 Score=360.06 Aligned_cols=255 Identities=23% Similarity=0.357 Sum_probs=208.4
Q ss_pred hcCCCccceeccCCcEEEEEEEeC--------CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhcc-CCCcccceeeeee
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP--------SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEI-RHRNIVKFYGFCS 471 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~ 471 (673)
.++|.+.+.||+|+||+||+|+.. .++.||||+++... .....+.+.+|+++++++ +||||+++++++.
T Consensus 68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~ 145 (382)
T 3tt0_A 68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDA--TEKDLSDLISEMEMMKMIGKHKNIINLLGACT 145 (382)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeecccc--CHHHHHHHHHHHHHHHHhcCCchhhhheeeec
Confidence 357888999999999999999752 34679999987642 334567899999999999 8999999999999
Q ss_pred cCCeeeEEEecccCCChHHHHhcCCC-------------CccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCe
Q 005864 472 HPRHSFLVYECLERGSLAEILSNDGS-------------IKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNV 538 (673)
Q Consensus 472 ~~~~~~lv~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Ni 538 (673)
.++..++||||+++|+|.+++..... ...+++..+..++.|++.||+|||+. +|+||||||+||
T Consensus 146 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NI 222 (382)
T 3tt0_A 146 QDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNV 222 (382)
T ss_dssp SSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGE
T ss_pred cCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCcceE
Confidence 99999999999999999999987542 23589999999999999999999999 999999999999
Q ss_pred EeCCCCceEEecccceeecCCCCC--CceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccc
Q 005864 539 LLSSEYEARVSDFGIAKFLKPGSS--NWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSS 615 (673)
Q Consensus 539 ll~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~ 615 (673)
++++++.+||+|||+++....... ......+|+.|+|||++.+..++.++|||||||++|||++ |..||......+
T Consensus 223 ll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~~~- 301 (382)
T 3tt0_A 223 LVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEE- 301 (382)
T ss_dssp EECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH-
T ss_pred EEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHH-
Confidence 999999999999999987654322 2233457889999999999999999999999999999999 999987432211
Q ss_pred cccccccccccccCC-CCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 616 SSSNMNLSLNEILDP-RLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 616 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
....+... ....+. ..+.++.+++.+||+.||++|||++|+++.|+
T Consensus 302 -------~~~~~~~~~~~~~~~----~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~ 348 (382)
T 3tt0_A 302 -------LFKLLKEGHRMDKPS----NCTNELYMMMRDCWHAVPSQRPTFKQLVEDLD 348 (382)
T ss_dssp -------HHHHHHTTCCCCCCS----SCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred -------HHHHHHcCCCCCCCc----cCCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 11111111 111111 22345889999999999999999999999986
No 76
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=100.00 E-value=1.6e-42 Score=371.50 Aligned_cols=251 Identities=21% Similarity=0.240 Sum_probs=199.0
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 479 (673)
.++|++.+.||+|+||.||+|... +|+.||||++.............+.+|+.+++.++||||+++++++...+..++|
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv 226 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV 226 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence 367999999999999999999764 6999999999765444444567788999999999999999999999999999999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhh-cCCCCeEEecCCCCCeEeCCCCceEEecccceeecC
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHH-DCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLK 558 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~-~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~ 558 (673)
|||+++|+|.+++...+ .+++..+..++.|++.||+|||+ . +|+||||||+||+++.++.+||+|||+++...
T Consensus 227 ~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~~---giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 300 (446)
T 4ejn_A 227 MEYANGGELFFHLSRER---VFSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGHIKITDFGLCKEGI 300 (446)
T ss_dssp ECCCSSCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHHT---CCCCCCCCGGGEEECSSSCEEECCCCCCCTTC
T ss_pred EeeCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHhhcC---CEEECCCCHHHEEECCCCCEEEccCCCceecc
Confidence 99999999999997653 58899999999999999999998 7 99999999999999999999999999998654
Q ss_pred CCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcc
Q 005864 559 PGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRN 638 (673)
Q Consensus 559 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (673)
..........||+.|+|||++.+..++.++|||||||++|||++|+.||...... .....+.......+..
T Consensus 301 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~--------~~~~~i~~~~~~~p~~- 371 (446)
T 4ejn_A 301 KDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE--------KLFELILMEEIRFPRT- 371 (446)
T ss_dssp C-----CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--------HHHHHHHHCCCCCCTT-
T ss_pred CCCcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHH--------HHHHHHHhCCCCCCcc-
Confidence 4444455678999999999999999999999999999999999999999743221 1112222223333322
Q ss_pred hHHHHHHHHHHHHHcccCCCCCCC-----CHHHHHH
Q 005864 639 IQDKLISILEVALLCLEESPESRP-----TMQTVCQ 669 (673)
Q Consensus 639 ~~~~~~~l~~li~~cl~~dp~~Rp-----s~~~v~~ 669 (673)
.+.++.+++.+||+.||.+|| +++|+++
T Consensus 372 ---~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~ 404 (446)
T 4ejn_A 372 ---LGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ 404 (446)
T ss_dssp ---SCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred ---CCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence 234588999999999999999 9999975
No 77
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=100.00 E-value=4.1e-43 Score=358.01 Aligned_cols=254 Identities=25% Similarity=0.365 Sum_probs=198.8
Q ss_pred cCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCe----e
Q 005864 402 KNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRH----S 476 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~----~ 476 (673)
++|++.+.||+|+||+||+|++ .+|+.||||++......+......+.+|+.++.+++||||+++++++..... .
T Consensus 12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~ 91 (311)
T 3ork_A 12 DRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLP 91 (311)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEEE
T ss_pred CcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCccc
Confidence 5789999999999999999976 5789999999987655555667789999999999999999999999876543 4
Q ss_pred eEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceee
Q 005864 477 FLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKF 556 (673)
Q Consensus 477 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~ 556 (673)
++||||+++|+|.++++..+ .+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++..
T Consensus 92 ~lv~e~~~g~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~ 165 (311)
T 3ork_A 92 YIVMEYVDGVTLRDIVHTEG---PMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIARA 165 (311)
T ss_dssp EEEEECCCEEEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEETTSCEEECCCSCC--
T ss_pred EEEEecCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEcCCCCEEEeeccCccc
Confidence 99999999999999998653 488999999999999999999999 999999999999999999999999999987
Q ss_pred cCCCCC---CceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCC
Q 005864 557 LKPGSS---NWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLP 633 (673)
Q Consensus 557 ~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (673)
...... ......||+.|+|||++.+..++.++||||||+++|||++|+.||......+. ..........
T Consensus 166 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~--------~~~~~~~~~~ 237 (311)
T 3ork_A 166 IADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSV--------AYQHVREDPI 237 (311)
T ss_dssp ----------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHH--------HHHHHHCCCC
T ss_pred ccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHH--------HHHHhcCCCC
Confidence 644322 22345689999999999999999999999999999999999999974332111 1111111111
Q ss_pred CCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 634 LPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 634 ~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.+.......+.++.+++.+||+.||++||++.++++
T Consensus 238 ~~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~ 273 (311)
T 3ork_A 238 PPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMR 273 (311)
T ss_dssp CHHHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHH
T ss_pred CcccccCCCCHHHHHHHHHHHhcCHhhChhhHHHHH
Confidence 111111123456889999999999999998777664
No 78
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=100.00 E-value=7.1e-42 Score=349.70 Aligned_cols=255 Identities=24% Similarity=0.386 Sum_probs=208.9
Q ss_pred hcCCCccceeccCCcEEEEEEEe------CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCC
Q 005864 401 TKNFDAEQCIGIGGQASVYRGEL------PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPR 474 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~ 474 (673)
.++|.+.+.||+|+||.||+|.. .+++.||||+++... .....+.+.+|++++++++||||+++++++.+++
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~ 99 (314)
T 2ivs_A 22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENA--SPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDG 99 (314)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS
T ss_pred hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCC--CHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCC
Confidence 46788999999999999999975 346889999987542 3345678999999999999999999999999999
Q ss_pred eeeEEEecccCCChHHHHhcCCC---------------------CccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecC
Q 005864 475 HSFLVYECLERGSLAEILSNDGS---------------------IKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDI 533 (673)
Q Consensus 475 ~~~lv~e~~~~gsL~~~l~~~~~---------------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl 533 (673)
..++||||+++|+|.+++..... ...+++..++.++.|+++||+|||++ +|+||||
T Consensus 100 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~di 176 (314)
T 2ivs_A 100 PLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---KLVHRDL 176 (314)
T ss_dssp SCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHT---TEECCCC
T ss_pred ceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHC---CCccccc
Confidence 99999999999999999987542 23489999999999999999999999 9999999
Q ss_pred CCCCeEeCCCCceEEecccceeecCCCCCC--ceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCccc
Q 005864 534 SSKNVLLSSEYEARVSDFGIAKFLKPGSSN--WTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFI 610 (673)
Q Consensus 534 k~~Nill~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~ 610 (673)
||+||+++.++.+||+|||++......... .....+++.|+|||.+.+..++.++||||+|+++|||++ |+.||...
T Consensus 177 kp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~ 256 (314)
T 2ivs_A 177 AARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGI 256 (314)
T ss_dssp SGGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred chheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence 999999999999999999999877543322 233456788999999999899999999999999999999 99998743
Q ss_pred ccccccccccccccccccCC-CCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 611 SLLSSSSSNMNLSLNEILDP-RLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
..... ...+... ....+ ...+..+.+++.+||+.||++|||+.|+++.|+
T Consensus 257 ~~~~~--------~~~~~~~~~~~~~----~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~ 307 (314)
T 2ivs_A 257 PPERL--------FNLLKTGHRMERP----DNCSEEMYRLMLQCWKQEPDKRPVFADISKDLE 307 (314)
T ss_dssp CGGGH--------HHHHHTTCCCCCC----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CHHHH--------HHHhhcCCcCCCC----ccCCHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence 22111 1111111 11111 123346889999999999999999999999886
No 79
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=100.00 E-value=7.6e-43 Score=363.99 Aligned_cols=264 Identities=23% Similarity=0.361 Sum_probs=210.0
Q ss_pred HHHHHHHhcCCCccceeccCCcEEEEEEEe------CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhcc-CCCcccce
Q 005864 394 YEEIIRATKNFDAEQCIGIGGQASVYRGEL------PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEI-RHRNIVKF 466 (673)
Q Consensus 394 ~~~~~~~~~~~~~~~~ig~G~~g~vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l 466 (673)
..++....++|++.+.||+|+||.||+|++ .+++.||||+++... .....+.+.+|++++.++ +||||+++
T Consensus 14 ~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hpniv~~ 91 (359)
T 3vhe_A 14 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA--THSEHRALMSELKILIHIGHHLNVVNL 91 (359)
T ss_dssp HHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred cccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcC--CHHHHHHHHHHHHHHHhhcCCcceeee
Confidence 345555678899999999999999999963 356899999997542 233467899999999999 79999999
Q ss_pred eeeeecCC-eeeEEEecccCCChHHHHhcCCC------------------------------------------------
Q 005864 467 YGFCSHPR-HSFLVYECLERGSLAEILSNDGS------------------------------------------------ 497 (673)
Q Consensus 467 ~~~~~~~~-~~~lv~e~~~~gsL~~~l~~~~~------------------------------------------------ 497 (673)
++++.+++ ..++||||+++|+|.++++....
T Consensus 92 ~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (359)
T 3vhe_A 92 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEK 171 (359)
T ss_dssp EEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC------------------------------------------
T ss_pred eeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccccccc
Confidence 99998755 48999999999999999986542
Q ss_pred ---------------CccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCCCC
Q 005864 498 ---------------IKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPGSS 562 (673)
Q Consensus 498 ---------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~ 562 (673)
...+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++........
T Consensus 172 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~ 248 (359)
T 3vhe_A 172 SLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD 248 (359)
T ss_dssp ------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTT
T ss_pred ccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCcEEEEeccceeeeccccc
Confidence 11288999999999999999999999 999999999999999999999999999987644332
Q ss_pred --CceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccccccccccccCCCCCCCCcch
Q 005864 563 --NWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRNI 639 (673)
Q Consensus 563 --~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (673)
......+|+.|+|||++.+..++.++||||||+++|||++ |+.||.......... ..... ......+.
T Consensus 249 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~----~~~~~--~~~~~~~~--- 319 (359)
T 3vhe_A 249 YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFC----RRLKE--GTRMRAPD--- 319 (359)
T ss_dssp CEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHH----HHHHH--TCCCCCCT---
T ss_pred chhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHHH----HHHHc--CCCCCCCC---
Confidence 2234567889999999999999999999999999999998 999987432211100 00000 01111111
Q ss_pred HHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 640 QDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 640 ~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
..+.++.+++.+||+.||++|||+.|+++.|+
T Consensus 320 -~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~ 351 (359)
T 3vhe_A 320 -YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLG 351 (359)
T ss_dssp -TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHccCChhhCCCHHHHHHHHH
Confidence 12345889999999999999999999999986
No 80
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=100.00 E-value=1.2e-42 Score=358.01 Aligned_cols=252 Identities=23% Similarity=0.305 Sum_probs=205.5
Q ss_pred HhcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhcc-CCCcccceeeeeecCCeee
Q 005864 400 ATKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEI-RHRNIVKFYGFCSHPRHSF 477 (673)
Q Consensus 400 ~~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~ 477 (673)
..++|++.+.||+|+||+||+|..+ +|+.||||++..... ...+|++++.++ +||||+++++++.+++..+
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~-------~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~ 92 (342)
T 2qr7_A 20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR-------DPTEEIEILLRYGQHPNIITLKDVYDDGKYVY 92 (342)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC-------CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEE
T ss_pred ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC-------ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEE
Confidence 3567999999999999999999775 689999999865422 234688888888 7999999999999999999
Q ss_pred EEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCC----CceEEecccc
Q 005864 478 LVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSE----YEARVSDFGI 553 (673)
Q Consensus 478 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~----~~~kl~Dfg~ 553 (673)
+||||+++|+|.+++...+ .+++..+..++.||+.||+|||++ +|+||||||+||++.++ +.+||+|||+
T Consensus 93 lv~E~~~gg~L~~~i~~~~---~~~~~~~~~~~~qi~~al~~lH~~---givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~ 166 (342)
T 2qr7_A 93 VVTELMKGGELLDKILRQK---FFSEREASAVLFTITKTVEYLHAQ---GVVHRDLKPSNILYVDESGNPESIRICDFGF 166 (342)
T ss_dssp EEECCCCSCBHHHHHHTCT---TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSCSGGGEEECCCTT
T ss_pred EEEeCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcEeccCCHHHEEEecCCCCcCeEEEEECCC
Confidence 9999999999999998653 589999999999999999999999 99999999999998543 3599999999
Q ss_pred eeecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCC
Q 005864 554 AKFLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLP 633 (673)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (673)
+..............||+.|+|||++.+..++.++||||+||++|||++|+.||..... .........+......
T Consensus 167 a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~-----~~~~~~~~~i~~~~~~ 241 (342)
T 2qr7_A 167 AKQLRAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPD-----DTPEEILARIGSGKFS 241 (342)
T ss_dssp CEECBCTTCCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTT-----SCHHHHHHHHHHCCCC
T ss_pred cccCcCCCCceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCc-----CCHHHHHHHHccCCcc
Confidence 99876555555567889999999999888899999999999999999999999974211 0111122222233333
Q ss_pred CCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 634 LPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 634 ~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.+...+...+.++.+++.+||+.||++|||+.|+++
T Consensus 242 ~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~ 277 (342)
T 2qr7_A 242 LSGGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLR 277 (342)
T ss_dssp CCSTTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred cCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 333333344567899999999999999999999875
No 81
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=100.00 E-value=3.8e-42 Score=356.00 Aligned_cols=250 Identities=23% Similarity=0.334 Sum_probs=191.3
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 479 (673)
.+.|++.+.||+|+||+||+|+.. +++.||||+++... ..+.+.+|++++.+++||||+++++++.+++..++|
T Consensus 52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~-----~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 126 (349)
T 2w4o_A 52 SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV-----DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLV 126 (349)
T ss_dssp GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC---------------CHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch-----hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEE
Confidence 457889999999999999999876 58899999987542 245688999999999999999999999999999999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCC---CCceEEecccceee
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSS---EYEARVSDFGIAKF 556 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~---~~~~kl~Dfg~~~~ 556 (673)
|||+++|+|.+++... ..+++..+..++.|++.||+|||+. +|+||||||+||+++. ++.+||+|||+++.
T Consensus 127 ~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~ 200 (349)
T 2w4o_A 127 LELVTGGELFDRIVEK---GYYSERDAADAVKQILEAVAYLHEN---GIVHRDLKPENLLYATPAPDAPLKIADFGLSKI 200 (349)
T ss_dssp ECCCCSCBHHHHHTTC---SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESSSSTTCCEEECCCC----
T ss_pred EEeCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCcccEEEecCCCCCCEEEccCccccc
Confidence 9999999999999765 3488999999999999999999999 9999999999999975 78999999999986
Q ss_pred cCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCC
Q 005864 557 LKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPS 636 (673)
Q Consensus 557 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (673)
.... .......||+.|+|||++.+..++.++|||||||++|||++|+.||....... .....+.......+.
T Consensus 201 ~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-------~~~~~i~~~~~~~~~ 272 (349)
T 2w4o_A 201 VEHQ-VLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQ-------FMFRRILNCEYYFIS 272 (349)
T ss_dssp -------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHH-------HHHHHHHTTCCCCCT
T ss_pred cCcc-cccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccH-------HHHHHHHhCCCccCC
Confidence 6432 22345678999999999999899999999999999999999999986332111 111222222222222
Q ss_pred cchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 637 RNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 637 ~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
..+...+.++.+++.+||+.||++|||+.|+++
T Consensus 273 ~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 305 (349)
T 2w4o_A 273 PWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQ 305 (349)
T ss_dssp TTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred chhhhCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 222334556899999999999999999999986
No 82
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=100.00 E-value=3.5e-42 Score=346.36 Aligned_cols=251 Identities=24% Similarity=0.414 Sum_probs=204.0
Q ss_pred hcCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
.++|++.+.||+|+||+||+|++.++..||+|++...... .+++.+|++++.+++||||+++++++.+++..++||
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 98 (283)
T 3gen_A 23 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS----EDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIIT 98 (283)
T ss_dssp GGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSBC----HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEE
T ss_pred HHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCCC----HHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEE
Confidence 4678889999999999999999988889999998754322 456889999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
||+++|+|.+++.... ..+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++......
T Consensus 99 e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~ 173 (283)
T 3gen_A 99 EYMANGCLLNYLREMR--HRFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDD 173 (283)
T ss_dssp CCCTTCBHHHHHHCGG--GCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCH
T ss_pred eccCCCcHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCccceEEEcCCCCEEEcccccccccccc
Confidence 9999999999998643 4589999999999999999999999 9999999999999999999999999999865432
Q ss_pred CC-CceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccccccccccccCCC-CCCCCc
Q 005864 561 SS-NWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLSLNEILDPR-LPLPSR 637 (673)
Q Consensus 561 ~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 637 (673)
.. ......+++.|+|||.+.+..++.++||||+|+++|||++ |+.||......+. ...+.... ...+.
T Consensus 174 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~--------~~~~~~~~~~~~~~- 244 (283)
T 3gen_A 174 EYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSET--------AEHIAQGLRLYRPH- 244 (283)
T ss_dssp HHHSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHH--------HHHHHTTCCCCCCT-
T ss_pred ccccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhHH--------HHHHhcccCCCCCC-
Confidence 11 1223446788999999998899999999999999999998 9999874332111 11111111 11111
Q ss_pred chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 638 NIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 638 ~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
..+..+.+++.+||+.||++|||++|+++.|+
T Consensus 245 ---~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~ 276 (283)
T 3gen_A 245 ---LASEKVYTIMYSCWHEKADERPTFKILLSNIL 276 (283)
T ss_dssp ---TCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHH
T ss_pred ---cCCHHHHHHHHHHccCChhHCcCHHHHHHHHH
Confidence 11245889999999999999999999999885
No 83
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=100.00 E-value=9.6e-42 Score=359.28 Aligned_cols=264 Identities=19% Similarity=0.263 Sum_probs=205.1
Q ss_pred hcCCCccceeccC--CcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeee
Q 005864 401 TKNFDAEQCIGIG--GQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSF 477 (673)
Q Consensus 401 ~~~~~~~~~ig~G--~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 477 (673)
.++|++.+.||+| +||+||+|+.. +|+.||||++...... ....+.+.+|+.+++.++|||||++++++.+++..+
T Consensus 24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 102 (389)
T 3gni_B 24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACS-NEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELW 102 (389)
T ss_dssp GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccC-hHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEE
Confidence 3679999999999 99999999875 6999999999765332 345678889999999999999999999999999999
Q ss_pred EEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeec
Q 005864 478 LVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFL 557 (673)
Q Consensus 478 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~ 557 (673)
+||||+++|+|.+++..... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||+|||.+...
T Consensus 103 lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~ 178 (389)
T 3gni_B 103 VVTSFMAYGSAKDLICTHFM-DGMNELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSNLSM 178 (389)
T ss_dssp EEEECCTTCBHHHHHHHTCT-TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCGGGCEEC
T ss_pred EEEEccCCCCHHHHHhhhcc-cCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEcccccceee
Confidence 99999999999999987532 3489999999999999999999999 9999999999999999999999999998754
Q ss_pred CCCC-------CCceeccccccccccccccc--CCcCcchhHHHHHHHHHHHHhCCCCCccccccccccccccccccccc
Q 005864 558 KPGS-------SNWTEFAGTFGYVAPELAYT--MKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEIL 628 (673)
Q Consensus 558 ~~~~-------~~~~~~~~~~~y~aPE~~~~--~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~ 628 (673)
.... .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.....................
T Consensus 179 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~ 258 (389)
T 3gni_B 179 ISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLL 258 (389)
T ss_dssp EETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHHHC---------
T ss_pred ccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCccc
Confidence 3211 11223468899999999987 67999999999999999999999999753322111110000000000
Q ss_pred CCC---------------------------CC-------CCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 629 DPR---------------------------LP-------LPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 629 ~~~---------------------------~~-------~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
+.. .+ .........+.++.+++.+||+.||++|||++|+++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~ 333 (389)
T 3gni_B 259 DTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLN 333 (389)
T ss_dssp -----------------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred cccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhc
Confidence 000 00 000112233456899999999999999999999975
No 84
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=100.00 E-value=1e-41 Score=344.95 Aligned_cols=250 Identities=23% Similarity=0.366 Sum_probs=210.9
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
++|.+.+.||+|+||+||+|... +++.||+|.+...........+.+.+|+.+++.++||||+++++++.+++..++||
T Consensus 15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 94 (294)
T 2rku_A 15 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVL 94 (294)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEEE
Confidence 57889999999999999999775 58899999987654444556778999999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
||+++++|.+++... ..+++..+..++.|+++||+|||+. +++||||||+||+++.++.+||+|||++......
T Consensus 95 e~~~~~~L~~~~~~~---~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~ 168 (294)
T 2rku_A 95 ELCRRRSLLELHKRR---KALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYD 168 (294)
T ss_dssp ECCTTCBHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECCST
T ss_pred ecCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEcCCCCEEEEeccCceecccC
Confidence 999999999998765 3588999999999999999999999 9999999999999999999999999999887654
Q ss_pred CCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcchH
Q 005864 561 SSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRNIQ 640 (673)
Q Consensus 561 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (673)
........|++.|+|||.+.+..++.++||||+|+++|||++|+.||+.....+ ....+.......+..
T Consensus 169 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~--------~~~~~~~~~~~~~~~--- 237 (294)
T 2rku_A 169 GERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKE--------TYLRIKKNEYSIPKH--- 237 (294)
T ss_dssp TCCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHH--------HHHHHHTTCCCCCTT---
T ss_pred ccccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH--------HHHHHhhccCCCccc---
Confidence 444555678999999999998889999999999999999999999987432211 111122222222222
Q ss_pred HHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 641 DKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 641 ~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.+..+.+++.+||+.||++|||++|+++
T Consensus 238 -~~~~~~~li~~~l~~~p~~Rps~~~ll~ 265 (294)
T 2rku_A 238 -INPVAASLIQKMLQTDPTARPTINELLN 265 (294)
T ss_dssp -SCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred -cCHHHHHHHHHHcccChhhCcCHHHHhh
Confidence 2345889999999999999999999875
No 85
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=5.9e-42 Score=343.16 Aligned_cols=248 Identities=23% Similarity=0.346 Sum_probs=182.8
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
++|++.+.||+|+||+||+|.+. +|+.||+|++...........+.+.+|+.+++.++||||+++++++.+++..++||
T Consensus 13 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 92 (275)
T 2eue_A 13 GNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp CCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSCEEEEE
T ss_pred cceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCeEEEEe
Confidence 57999999999999999999764 69999999997655444455678899999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
||+ ++++.+++... ..+++..+..++.|++.||+|||+. +++||||||+||++++++.+||+|||++......
T Consensus 93 e~~-~~~l~~~~~~~---~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~ 165 (275)
T 2eue_A 93 EYA-GNELFDYIVQR---DKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDG 165 (275)
T ss_dssp ECC-CEEHHHHHHTS---SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCSSCC------
T ss_pred hhc-CCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CCeeccCChHhEEECCCCCEEEeecccceeccCc
Confidence 999 66888888765 3488999999999999999999999 9999999999999999999999999999866433
Q ss_pred CCCceecccccccccccccccCCc-CcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcch
Q 005864 561 SSNWTEFAGTFGYVAPELAYTMKV-TEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRNI 639 (673)
Q Consensus 561 ~~~~~~~~~~~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (673)
. ......||+.|+|||.+.+..+ +.++||||+|+++|||++|+.||+..... .....+.......+..
T Consensus 166 ~-~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--------~~~~~~~~~~~~~~~~-- 234 (275)
T 2eue_A 166 N-FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIP--------VLFKNISNGVYTLPKF-- 234 (275)
T ss_dssp ----------CTTCCHHHHCC-----THHHHHHHHHHHHHHHHSSCSSCCSSHH--------HHHHHHHHTCCCCCTT--
T ss_pred c-cccCCCCCcCcCCceeeeCCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHH--------HHHHHHHhCCCCCCcc--
Confidence 2 2344568999999999987765 78999999999999999999999743221 1111122222222222
Q ss_pred HHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 640 QDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 640 ~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.+..+.+++.+||+.||++|||++|+++
T Consensus 235 --~~~~~~~li~~~l~~dP~~Rps~~e~l~ 262 (275)
T 2eue_A 235 --LSPGAAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp --SCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred --CCHHHHHHHHHHhhcCHhHCCCHHHHhh
Confidence 2345889999999999999999999975
No 86
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=100.00 E-value=3.1e-42 Score=359.24 Aligned_cols=254 Identities=24% Similarity=0.364 Sum_probs=205.0
Q ss_pred cCCCccceeccCCcEEEEEEEeC------CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCe
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP------SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRH 475 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~ 475 (673)
++|++.+.||+|+||+||+|.+. +++.||||+++... .......+.+|+.++.+++||||+++++++.+++.
T Consensus 71 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~ 148 (367)
T 3l9p_A 71 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVC--SEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLP 148 (367)
T ss_dssp GGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSC--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred hHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEeccccc--ChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCC
Confidence 56888999999999999999742 46789999986542 23345678899999999999999999999999999
Q ss_pred eeEEEecccCCChHHHHhcCCC----CccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCC---ceEE
Q 005864 476 SFLVYECLERGSLAEILSNDGS----IKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEY---EARV 548 (673)
Q Consensus 476 ~~lv~e~~~~gsL~~~l~~~~~----~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~---~~kl 548 (673)
.++||||+++|+|.+++...+. ...+++..++.++.||++||+|||++ +|+||||||+||+++.++ .+||
T Consensus 149 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~~~kL 225 (367)
T 3l9p_A 149 RFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAKI 225 (367)
T ss_dssp CEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEE
T ss_pred CEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEEecCCCCceEEE
Confidence 9999999999999999976431 23589999999999999999999999 999999999999999554 5999
Q ss_pred ecccceeecCCC--CCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccccccccc
Q 005864 549 SDFGIAKFLKPG--SSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLSLN 625 (673)
Q Consensus 549 ~Dfg~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~ 625 (673)
+|||+++..... ........+|+.|+|||.+.+..++.++|||||||++|||++ |..||......+ ...
T Consensus 226 ~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~~--------~~~ 297 (367)
T 3l9p_A 226 GDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQE--------VLE 297 (367)
T ss_dssp CCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH--------HHH
T ss_pred CCCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH--------HHH
Confidence 999999755221 122234567899999999999999999999999999999998 999987432211 111
Q ss_pred cccCCC-CCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 626 EILDPR-LPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 626 ~~~~~~-~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
.+.... ...+. ..+..+.+++.+||+.||++|||+.|+++.|+
T Consensus 298 ~i~~~~~~~~~~----~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~ 341 (367)
T 3l9p_A 298 FVTSGGRMDPPK----NCPGPVYRIMTQCWQHQPEDRPNFAIILERIE 341 (367)
T ss_dssp HHHTTCCCCCCT----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred HHHcCCCCCCCc----cCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHH
Confidence 111111 11111 22345889999999999999999999999885
No 87
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=100.00 E-value=1.7e-41 Score=342.95 Aligned_cols=261 Identities=18% Similarity=0.276 Sum_probs=202.8
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
++|++.+.||+|+||+||+|... +|+.||||++..... .....+.+.+|+.++++++||||+++++++.+++..++||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 80 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDD-DEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVF 80 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCS-STTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCC-cCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEE
Confidence 47889999999999999999775 689999999875432 2334577889999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
||+++ ++.+.+.... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++......
T Consensus 81 e~~~~-~l~~~~~~~~--~~l~~~~~~~~~~ql~~~l~~lH~~---~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~ 154 (292)
T 3o0g_A 81 EFCDQ-DLKKYFDSCN--GDLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGLARAFGIP 154 (292)
T ss_dssp ECCSE-EHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCSC
T ss_pred ecCCC-CHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeecccceecCCc
Confidence 99987 6666665432 4589999999999999999999999 9999999999999999999999999999987655
Q ss_pred CCCceecccccccccccccccCC-cCcchhHHHHHHHHHHHHhCCCCCccccccccc--------cccccccc---cccc
Q 005864 561 SSNWTEFAGTFGYVAPELAYTMK-VTEKCDVYSFGVLALEVIKGKHPRDFISLLSSS--------SSNMNLSL---NEIL 628 (673)
Q Consensus 561 ~~~~~~~~~~~~y~aPE~~~~~~-~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~--------~~~~~~~~---~~~~ 628 (673)
........||+.|+|||.+.+.. ++.++||||+||++|||++|..||......... .......+ ....
T Consensus 155 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 234 (292)
T 3o0g_A 155 VRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLP 234 (292)
T ss_dssp CSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGST
T ss_pred cccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhcccc
Confidence 55556678899999999987766 799999999999999999998885321111000 00000000 0000
Q ss_pred C-------CCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 629 D-------PRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 629 ~-------~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
+ +............+.++.+++.+||+.||++|||++|+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 282 (292)
T 3o0g_A 235 DYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ 282 (292)
T ss_dssp TCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred cccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhc
Confidence 0 0000000111223456889999999999999999999986
No 88
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=100.00 E-value=1e-41 Score=349.25 Aligned_cols=254 Identities=20% Similarity=0.288 Sum_probs=208.8
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhh---HHHHHHHHHHHHHhccCCCcccceeeeeecCCee
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEI---SVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHS 476 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 476 (673)
.+.|++.+.||+|+||.||+|... +|+.||+|.+........ ...+.+.+|+.++.+++||||+++++++.+++..
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 90 (321)
T 2a2a_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDV 90 (321)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEE
Confidence 356899999999999999999775 699999999876432221 1357789999999999999999999999999999
Q ss_pred eEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCC----ceEEeccc
Q 005864 477 FLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEY----EARVSDFG 552 (673)
Q Consensus 477 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~----~~kl~Dfg 552 (673)
++||||+++++|.+++... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++ .+||+|||
T Consensus 91 ~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~aL~~lH~~---~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg 164 (321)
T 2a2a_A 91 VLILELVSGGELFDFLAQK---ESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDFG 164 (321)
T ss_dssp EEEECCCCSCBHHHHHHTC---SCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECCCT
T ss_pred EEEEEcCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChHHEEEecCCCCcCCEEEccCc
Confidence 9999999999999999864 3589999999999999999999999 999999999999999887 79999999
Q ss_pred ceeecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCC
Q 005864 553 IAKFLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRL 632 (673)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (673)
++....... ......||+.|+|||.+.+..++.++||||||+++|||++|+.||...... .....+.....
T Consensus 165 ~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--------~~~~~i~~~~~ 235 (321)
T 2a2a_A 165 LAHEIEDGV-EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQ--------ETLANITSVSY 235 (321)
T ss_dssp TCEECCTTC-CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHH--------HHHHHHHTTCC
T ss_pred cceecCccc-cccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHH--------HHHHHHHhccc
Confidence 998775432 234467899999999999999999999999999999999999998643211 11112222222
Q ss_pred CCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 633 PLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 633 ~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
..+.......+..+.+++.+||+.||++|||++|+++
T Consensus 236 ~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~ 272 (321)
T 2a2a_A 236 DFDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEALR 272 (321)
T ss_dssp CCCHHHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHH
T ss_pred ccChhhhcccCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 2221122233456899999999999999999999986
No 89
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=100.00 E-value=1.2e-41 Score=341.72 Aligned_cols=249 Identities=27% Similarity=0.450 Sum_probs=204.0
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 479 (673)
.++|++.+.||+|+||+||+|... +++.||+|++.............+.+|+.++++++||||+++++++.+.+..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 87 (279)
T 3fdn_A 8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI 87 (279)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEE
Confidence 357889999999999999999765 5789999998765444444567789999999999999999999999999999999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCC
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKP 559 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~ 559 (673)
|||+++|+|.+++.... .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.++|+|||++.....
T Consensus 88 ~e~~~~~~l~~~l~~~~---~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~ 161 (279)
T 3fdn_A 88 LEYAPLGTVYRELQKLS---KFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPS 161 (279)
T ss_dssp ECCCTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTT---TCEECCCCGGGEEECTTSCEEECSCCEESCC--
T ss_pred EecCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHhEEEcCCCCEEEEeccccccCCc
Confidence 99999999999997653 488899999999999999999999 999999999999999999999999999865432
Q ss_pred CCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcch
Q 005864 560 GSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRNI 639 (673)
Q Consensus 560 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (673)
.......|++.|+|||.+.+..++.++||||+|+++|||++|+.||......+ ....+.......+..
T Consensus 162 --~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~--------~~~~~~~~~~~~~~~-- 229 (279)
T 3fdn_A 162 --SRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQE--------TYKRISRVEFTFPDF-- 229 (279)
T ss_dssp --------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH--------HHHHHHHTCCCCCTT--
T ss_pred --ccccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHH--------HHHHHHhCCCCCCCc--
Confidence 22344678999999999999999999999999999999999999987432211 111111122222221
Q ss_pred HHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 640 QDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 640 ~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.+..+.+++.+||+.||++|||++|+++
T Consensus 230 --~~~~~~~li~~~l~~~p~~Rps~~e~l~ 257 (279)
T 3fdn_A 230 --VTEGARDLISRLLKHNPSQRPMLREVLE 257 (279)
T ss_dssp --SCHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred --CCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence 2345889999999999999999999986
No 90
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.7e-42 Score=350.51 Aligned_cols=257 Identities=21% Similarity=0.307 Sum_probs=201.3
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 479 (673)
.++|++.+.||+|+||+||+|... +++.||+|++......+....+.+.+|+.++.+++||||+++++++..++..++|
T Consensus 33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 112 (309)
T 2h34_A 33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVD 112 (309)
T ss_dssp -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEE
Confidence 478999999999999999999875 6889999999876555555678899999999999999999999999999999999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCC
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKP 559 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~ 559 (673)
+||+++++|.+++...+ .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++.....
T Consensus 113 ~e~~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~ 186 (309)
T 2h34_A 113 MRLINGVDLAAMLRRQG---PLAPPRAVAIVRQIGSALDAAHAA---GATHRDVKPENILVSADDFAYLVDFGIASATTD 186 (309)
T ss_dssp EECCCCEEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSCCC------
T ss_pred EEecCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---cCCcCCCChHHEEEcCCCCEEEecCccCccccc
Confidence 99999999999998653 488999999999999999999999 999999999999999999999999999986644
Q ss_pred CC-CCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcc
Q 005864 560 GS-SNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRN 638 (673)
Q Consensus 560 ~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (673)
.. .......+++.|+|||.+.+..++.++||||||+++|||++|+.||....... ....+....+.+...
T Consensus 187 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~---------~~~~~~~~~~~~~~~ 257 (309)
T 2h34_A 187 EKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLSV---------MGAHINQAIPRPSTV 257 (309)
T ss_dssp ----------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHHH---------HHHHHHSCCCCGGGT
T ss_pred cccccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHHH---------HHHHhccCCCCcccc
Confidence 32 22334578999999999999899999999999999999999999997433210 011111111111111
Q ss_pred hHHHHHHHHHHHHHcccCCCCCCC-CHHHHHHHhh
Q 005864 639 IQDKLISILEVALLCLEESPESRP-TMQTVCQLLC 672 (673)
Q Consensus 639 ~~~~~~~l~~li~~cl~~dp~~Rp-s~~~v~~~L~ 672 (673)
....+.++.+++.+||+.||++|| +++++++.|+
T Consensus 258 ~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~ 292 (309)
T 2h34_A 258 RPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAH 292 (309)
T ss_dssp STTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHH
Confidence 122334588999999999999999 9999999885
No 91
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=100.00 E-value=8.9e-42 Score=347.90 Aligned_cols=246 Identities=21% Similarity=0.235 Sum_probs=195.5
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhcc-CCCcccceeeeeecCCeeeEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEI-RHRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv 479 (673)
++|++.+.||+|+||+||+|+.. +|+.||||++......... ...+..|+..+.++ +||||++++++|.+++..++|
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~-~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv 135 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKD-RARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQ 135 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHH-HHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHH-HHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEE
Confidence 57999999999999999999876 7999999998654333333 34455566655555 899999999999999999999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCC
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKP 559 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~ 559 (673)
|||+ +++|.+++...+ ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++.....
T Consensus 136 ~e~~-~~~L~~~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~ 209 (311)
T 3p1a_A 136 TELC-GPSLQQHCEAWG--ASLPEAQVWGYLRDTLLALAHLHSQ---GLVHLDVKPANIFLGPRGRCKLGDFGLLVELGT 209 (311)
T ss_dssp EECC-CCBHHHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECGGGCEEECCCTTCEECC-
T ss_pred Eecc-CCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEccceeeeeccc
Confidence 9999 669999987654 4589999999999999999999999 999999999999999999999999999987643
Q ss_pred CCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcch
Q 005864 560 GSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRNI 639 (673)
Q Consensus 560 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (673)
.. ......||++|+|||++.+ .++.++|||||||++|||++|..|+....... .+.....+ ....
T Consensus 210 ~~-~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~~~~~-----------~~~~~~~~--~~~~ 274 (311)
T 3p1a_A 210 AG-AGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGEGWQ-----------QLRQGYLP--PEFT 274 (311)
T ss_dssp ------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSHHHHH-----------HHTTTCCC--HHHH
T ss_pred CC-CCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCccHHH-----------HHhccCCC--cccc
Confidence 32 2344568999999998875 78999999999999999999977654322211 11111111 1112
Q ss_pred HHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 640 QDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 640 ~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
...+.++.+++.+||+.||++|||++|+++
T Consensus 275 ~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 304 (311)
T 3p1a_A 275 AGLSSELRSVLVMMLEPDPKLRATAEALLA 304 (311)
T ss_dssp TTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred cCCCHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence 223456899999999999999999999986
No 92
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=100.00 E-value=1.2e-41 Score=364.47 Aligned_cols=247 Identities=28% Similarity=0.421 Sum_probs=203.3
Q ss_pred hcCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCC-eeeEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPR-HSFLV 479 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~-~~~lv 479 (673)
.++|++.+.||+|+||+||+|.+. |+.||||+++... ..+.|.+|+.++++++||||+++++++.+.+ ..++|
T Consensus 192 ~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~-----~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv 265 (450)
T 1k9a_A 192 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA-----TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIV 265 (450)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT-----TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEE
T ss_pred hHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch-----HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEE
Confidence 467888999999999999999884 7899999987542 3567899999999999999999999987655 78999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCC
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKP 559 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~ 559 (673)
|||+++|+|.+++...+. ..+++..+..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 266 ~e~~~~g~L~~~l~~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~ 341 (450)
T 1k9a_A 266 TEYMAKGSLVDYLRSRGR-SVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASS 341 (450)
T ss_dssp EECCTTCBHHHHHHHHCT-TTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTSCEEECCCTTCEECC-
T ss_pred EEecCCCcHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEECCCCCEEEeeCCCcccccc
Confidence 999999999999987542 3478899999999999999999999 999999999999999999999999999986532
Q ss_pred CCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccccccccccccCC-CCCCCCc
Q 005864 560 GSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLSLNEILDP-RLPLPSR 637 (673)
Q Consensus 560 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 637 (673)
. .....+++.|+|||.+.+..++.++||||||+++|||++ |+.||......+. ...+... +++.+.
T Consensus 342 ~---~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~--------~~~i~~~~~~~~p~- 409 (450)
T 1k9a_A 342 T---QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDV--------VPRVEKGYKMDAPD- 409 (450)
T ss_dssp --------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTH--------HHHHHTTCCCCCCT-
T ss_pred c---ccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHH--------HHHHHcCCCCCCCC-
Confidence 2 122356889999999999999999999999999999998 9999874432111 1111111 222222
Q ss_pred chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 638 NIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 638 ~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
..+.++.+++.+||+.||++|||+.|+++.|+
T Consensus 410 ---~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~ 441 (450)
T 1k9a_A 410 ---GCPPAVYDVMKNCWHLDAATRPTFLQLREQLE 441 (450)
T ss_dssp ---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred ---cCCHHHHHHHHHHcCCChhHCcCHHHHHHHHH
Confidence 23456899999999999999999999999886
No 93
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.8e-42 Score=364.10 Aligned_cols=261 Identities=23% Similarity=0.265 Sum_probs=209.1
Q ss_pred HHHHHHHhcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeec
Q 005864 394 YEEIIRATKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSH 472 (673)
Q Consensus 394 ~~~~~~~~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~ 472 (673)
+++.....++|++.+.||+|+||+||+|+.+ +|+.||+|++.+.........+.+.+|..++..++||||+++++++.+
T Consensus 53 ~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~ 132 (412)
T 2vd5_A 53 LKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQD 132 (412)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred hhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEee
Confidence 3444455688999999999999999999875 699999999976443333345568899999999999999999999999
Q ss_pred CCeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEeccc
Q 005864 473 PRHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFG 552 (673)
Q Consensus 473 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg 552 (673)
++..++||||+++|+|.+++...+ ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 133 ~~~~~lVmE~~~gg~L~~~l~~~~--~~l~~~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILld~~g~vkL~DFG 207 (412)
T 2vd5_A 133 ENYLYLVMEYYVGGDLLTLLSKFG--ERIPAEMARFYLAEIVMAIDSVHRL---GYVHRDIKPDNILLDRCGHIRLADFG 207 (412)
T ss_dssp SSEEEEEECCCCSCBHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCT
T ss_pred CCEEEEEEcCCCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccCHHHeeecCCCCEEEeech
Confidence 999999999999999999998643 3588999999999999999999999 99999999999999999999999999
Q ss_pred ceeecCCCCCC-ceecccccccccccccc-------cCCcCcchhHHHHHHHHHHHHhCCCCCccccccccccccccccc
Q 005864 553 IAKFLKPGSSN-WTEFAGTFGYVAPELAY-------TMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSL 624 (673)
Q Consensus 553 ~~~~~~~~~~~-~~~~~~~~~y~aPE~~~-------~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~ 624 (673)
+++........ .....||+.|+|||++. +..++.++|||||||++|||++|+.||......+. .
T Consensus 208 la~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~--------~ 279 (412)
T 2vd5_A 208 SCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAET--------Y 279 (412)
T ss_dssp TCEECCTTSCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHH--------H
T ss_pred hheeccCCCccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHHH--------H
Confidence 99887544332 23457999999999987 45789999999999999999999999974322111 1
Q ss_pred ccccCC--CCCCCCcchHHHHHHHHHHHHHcccCCCCCC---CCHHHHHH
Q 005864 625 NEILDP--RLPLPSRNIQDKLISILEVALLCLEESPESR---PTMQTVCQ 669 (673)
Q Consensus 625 ~~~~~~--~~~~~~~~~~~~~~~l~~li~~cl~~dp~~R---ps~~~v~~ 669 (673)
..++.. .+..+. .....+.++.+++.+||. +|++| |+++|+++
T Consensus 280 ~~i~~~~~~~~~p~-~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~ 327 (412)
T 2vd5_A 280 GKIVHYKEHLSLPL-VDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRT 327 (412)
T ss_dssp HHHHTHHHHCCCC-----CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHT
T ss_pred HHHHhcccCcCCCc-cccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhc
Confidence 111110 111110 111234568899999999 99998 68999864
No 94
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=100.00 E-value=1.4e-41 Score=342.29 Aligned_cols=253 Identities=23% Similarity=0.342 Sum_probs=207.8
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 479 (673)
.++|++.+.||+|+||.||+|... +|+.||+|++...... ....+.+.+|+.++++++||||+++++++..++..++|
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v 83 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLS-ARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV 83 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCC-HHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEE
Confidence 467999999999999999999765 6899999998765432 33467788999999999999999999999999999999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCc---eEEecccceee
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYE---ARVSDFGIAKF 556 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~---~kl~Dfg~~~~ 556 (673)
|||+++|+|.+.+... ..+++..+..++.|++.||+|||+. +++||||||+||+++.++. +||+|||++..
T Consensus 84 ~e~~~~~~l~~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~ 157 (284)
T 3kk8_A 84 FDLVTGGELFEDIVAR---EFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIE 157 (284)
T ss_dssp ECCCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSTTCCEEECCCTTCEE
T ss_pred EecCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CcCcCCCCHHHEEEecCCCCCcEEEeeceeeEE
Confidence 9999999999998765 3488999999999999999999999 9999999999999987655 99999999987
Q ss_pred cCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCC
Q 005864 557 LKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPS 636 (673)
Q Consensus 557 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (673)
.... .......|++.|+|||.+.+..++.++||||+|+++|+|++|+.||......+ ....+.......+.
T Consensus 158 ~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~--------~~~~~~~~~~~~~~ 228 (284)
T 3kk8_A 158 VNDS-EAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHR--------LYAQIKAGAYDYPS 228 (284)
T ss_dssp CCSS-CBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH--------HHHHHHHTCCCCCT
T ss_pred cccC-ccccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchhH--------HHHHHHhccccCCc
Confidence 6543 23345678999999999999999999999999999999999999986432211 11111112222222
Q ss_pred cchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 637 RNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 637 ~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
......+.++.+++.+||+.||++|||++|+++
T Consensus 229 ~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (284)
T 3kk8_A 229 PEWDTVTPEAKSLIDSMLTVNPKKRITADQALK 261 (284)
T ss_dssp TTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred hhhcccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 222233456889999999999999999999975
No 95
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=100.00 E-value=3.4e-42 Score=369.42 Aligned_cols=253 Identities=22% Similarity=0.401 Sum_probs=206.8
Q ss_pred HhcCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEE
Q 005864 400 ATKNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 400 ~~~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 479 (673)
..++|++.+.||+|+||+||+|.+.+++.||||+++.... ..+.|.+|+.++++++||||+++++++. .+..++|
T Consensus 186 ~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv 260 (454)
T 1qcf_A 186 PRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSM----SVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYII 260 (454)
T ss_dssp CGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTSB----CHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEE
T ss_pred chHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCCc----cHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEE
Confidence 3467888999999999999999998899999999875422 3678999999999999999999999986 5678999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCC
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKP 559 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~ 559 (673)
|||+++|+|.++++... ...+++..+..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 261 ~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~ 336 (454)
T 1qcf_A 261 TEFMAKGSLLDFLKSDE-GSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGLARVIED 336 (454)
T ss_dssp ECCCTTCBHHHHHHSHH-HHTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTCCEEECSTTGGGGBCC
T ss_pred EeecCCCcHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEECCCCcEEEeeCCCceEcCC
Confidence 99999999999997542 13478889999999999999999999 999999999999999999999999999986643
Q ss_pred CCC-CceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccccccccccccC-CCCCCCC
Q 005864 560 GSS-NWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLSLNEILD-PRLPLPS 636 (673)
Q Consensus 560 ~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 636 (673)
... ......+++.|+|||.+....++.++||||||+++|||++ |+.||......+. ...+.. .+++.+.
T Consensus 337 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~~--------~~~i~~~~~~~~~~ 408 (454)
T 1qcf_A 337 NEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEV--------IRALERGYRMPRPE 408 (454)
T ss_dssp HHHHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHH--------HHHHHHTCCCCCCT
T ss_pred CceeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHHH--------HHHHHcCCCCCCCC
Confidence 211 1123346788999999998899999999999999999999 9999974332111 011111 1222222
Q ss_pred cchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhhC
Q 005864 637 RNIQDKLISILEVALLCLEESPESRPTMQTVCQLLCK 673 (673)
Q Consensus 637 ~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~~ 673 (673)
..+.++.+++.+||+.||++|||++++++.|++
T Consensus 409 ----~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~ 441 (454)
T 1qcf_A 409 ----NCPEELYNIMMRCWKNRPEERPTFEYIQSVLDD 441 (454)
T ss_dssp ----TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred ----CCCHHHHHHHHHHccCChhHCcCHHHHHHHHHH
Confidence 233468999999999999999999999999864
No 96
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=100.00 E-value=4.3e-42 Score=351.20 Aligned_cols=258 Identities=22% Similarity=0.366 Sum_probs=208.9
Q ss_pred hcCCCccceeccCCcEEEEEEEe------CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhcc-CCCcccceeeeeecC
Q 005864 401 TKNFDAEQCIGIGGQASVYRGEL------PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEI-RHRNIVKFYGFCSHP 473 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~ 473 (673)
.++|++.+.||+|+||+||+|.+ .+++.||||+++... .....+.+.+|+.++.++ +||||+++++++..+
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~ 99 (313)
T 1t46_A 22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSA--HLTEREALMSELKVLSYLGNHMNIVNLLGACTIG 99 (313)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred hhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcch--hHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecC
Confidence 36788999999999999999974 357889999987542 233467899999999999 999999999999999
Q ss_pred CeeeEEEecccCCChHHHHhcCCC---------------CccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCe
Q 005864 474 RHSFLVYECLERGSLAEILSNDGS---------------IKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNV 538 (673)
Q Consensus 474 ~~~~lv~e~~~~gsL~~~l~~~~~---------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Ni 538 (673)
+..++||||+++|+|.+++..... ...+++..++.++.|+++||+|||+. +++||||||+||
T Consensus 100 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Ni 176 (313)
T 1t46_A 100 GPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNI 176 (313)
T ss_dssp SSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGE
T ss_pred CCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCccceE
Confidence 999999999999999999986542 12489999999999999999999999 999999999999
Q ss_pred EeCCCCceEEecccceeecCCCCCC--ceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccc
Q 005864 539 LLSSEYEARVSDFGIAKFLKPGSSN--WTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSS 615 (673)
Q Consensus 539 ll~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~ 615 (673)
+++.++.+||+|||++......... .....+++.|+|||.+.+..++.++||||||+++|||++ |+.||........
T Consensus 177 l~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~ 256 (313)
T 1t46_A 177 LLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSK 256 (313)
T ss_dssp EEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHH
T ss_pred EEcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchhH
Confidence 9999999999999999876544332 223456789999999999999999999999999999999 9999874322111
Q ss_pred cccccccccccccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhhC
Q 005864 616 SSSNMNLSLNEILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLCK 673 (673)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~~ 673 (673)
. ......... ...+ ...+..+.+++.+||+.||.+|||+.|+++.|++
T Consensus 257 ~----~~~~~~~~~--~~~~----~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~ 304 (313)
T 1t46_A 257 F----YKMIKEGFR--MLSP----EHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEK 304 (313)
T ss_dssp H----HHHHHHTCC--CCCC----TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred H----HHHhccCCC--CCCc----ccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHH
Confidence 0 000111111 1111 1223458899999999999999999999999863
No 97
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=100.00 E-value=2.4e-42 Score=354.79 Aligned_cols=250 Identities=24% Similarity=0.423 Sum_probs=197.9
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCC----EEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCee
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGE----VVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHS 476 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~----~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 476 (673)
++|++.+.||+|+||+||+|++. +|+ +||+|.+.... .....+.+.+|+.++++++||||++++++|..+. .
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~ 91 (327)
T 3poz_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT--SPKANKEILDEAYVMASVDNPHVCRLLGICLTST-V 91 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC---------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-E
T ss_pred HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeeccccc--CHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-e
Confidence 56889999999999999999764 444 35888775432 2234678999999999999999999999998765 7
Q ss_pred eEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceee
Q 005864 477 FLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKF 556 (673)
Q Consensus 477 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~ 556 (673)
++|+||+++|+|.+++.... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.
T Consensus 92 ~~v~e~~~~g~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~ 166 (327)
T 3poz_A 92 QLITQLMPFGCLLDYVREHK--DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKL 166 (327)
T ss_dssp EEEEECCTTCBHHHHHHHST--TSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTHHHH
T ss_pred EEEEEecCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCChheEEECCCCCEEEccCcceeE
Confidence 79999999999999998754 4588999999999999999999999 999999999999999999999999999987
Q ss_pred cCCCCCC--ceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccccccccccccCC--C
Q 005864 557 LKPGSSN--WTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLSLNEILDP--R 631 (673)
Q Consensus 557 ~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~--~ 631 (673)
....... .....+|+.|+|||++.+..++.++||||||+++|||++ |+.||+.....+ ....+.. .
T Consensus 167 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~---------~~~~~~~~~~ 237 (327)
T 3poz_A 167 LGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE---------ISSILEKGER 237 (327)
T ss_dssp HTTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG---------HHHHHHTTCC
T ss_pred ccCCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHH---------HHHHHHcCCC
Confidence 7544332 233456789999999999999999999999999999999 999997432211 1111111 1
Q ss_pred CCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 632 LPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 632 ~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
.+.+.. .+..+.+++.+||+.||++|||+.|+++.|+
T Consensus 238 ~~~~~~----~~~~~~~li~~~l~~~p~~Rps~~ell~~l~ 274 (327)
T 3poz_A 238 LPQPPI----CTIDVYMIMVKCWMIDADSRPKFRELIIEFS 274 (327)
T ss_dssp CCCCTT----BCHHHHHHHHHHTCSCGGGSCCHHHHHHHHH
T ss_pred CCCCcc----CCHHHHHHHHHHcCCChhhCCCHHHHHHHHH
Confidence 222222 2345889999999999999999999999875
No 98
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=100.00 E-value=7.9e-42 Score=343.30 Aligned_cols=252 Identities=25% Similarity=0.400 Sum_probs=194.5
Q ss_pred hcCCCccceeccCCcEEEEEEEeCC----CCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCee
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELPS----GEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHS 476 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 476 (673)
.++|++.+.||+|+||+||+|.+.. +..||+|.+... ......+.+.+|+.++++++||||+++++++. ++..
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~ 90 (281)
T 1mp8_A 14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNC--TSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPV 90 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTT--TSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSC
T ss_pred hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEecccc--CCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCcc
Confidence 4678899999999999999997642 457999998654 23345678999999999999999999999984 5678
Q ss_pred eEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceee
Q 005864 477 FLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKF 556 (673)
Q Consensus 477 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~ 556 (673)
++||||+++|+|.+++.... ..+++..+..++.|++.||+|||+. +++||||||+||+++.++.+||+|||+++.
T Consensus 91 ~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~ 165 (281)
T 1mp8_A 91 WIIMELCTLGELRSFLQVRK--YSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRY 165 (281)
T ss_dssp EEEEECCTTEEHHHHHHHTT--TTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC------
T ss_pred EEEEecCCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHEEECCCCCEEECccccccc
Confidence 89999999999999998653 3588999999999999999999999 999999999999999999999999999987
Q ss_pred cCCCCC-CceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccccccccccccCC-CCC
Q 005864 557 LKPGSS-NWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLSLNEILDP-RLP 633 (673)
Q Consensus 557 ~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 633 (673)
...... ......+++.|+|||.+.+..++.++||||||+++|||++ |..||......+ ....+... ..+
T Consensus 166 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~--------~~~~i~~~~~~~ 237 (281)
T 1mp8_A 166 MEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND--------VIGRIENGERLP 237 (281)
T ss_dssp -------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG--------HHHHHHTTCCCC
T ss_pred cCcccccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHH--------HHHHHHcCCCCC
Confidence 654322 1233456789999999998899999999999999999997 999987432211 11111111 111
Q ss_pred CCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 634 LPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 634 ~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
.+. ..+..+.+++.+||+.||++|||+.|+++.|+
T Consensus 238 ~~~----~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~ 272 (281)
T 1mp8_A 238 MPP----NCPPTLYSLMTKCWAYDPSRRPRFTELKAQLS 272 (281)
T ss_dssp CCT----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CCC----CCCHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence 221 23346889999999999999999999999886
No 99
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=100.00 E-value=3.5e-42 Score=372.63 Aligned_cols=252 Identities=25% Similarity=0.436 Sum_probs=208.2
Q ss_pred hcCCCccceeccCCcEEEEEEEeCC-CCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELPS-GEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 479 (673)
..+|++.+.||+|+||.||+|.+.. ++.||||.++.... ..++|.+|+.++++++||||++++++|..++..++|
T Consensus 219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv 294 (495)
T 1opk_A 219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM----EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 294 (495)
T ss_dssp GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS----CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEE
T ss_pred HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc----chHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEE
Confidence 3568888999999999999998764 88999999875422 257799999999999999999999999999999999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCC
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKP 559 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~ 559 (673)
|||+++|+|.++++.... ..+++..+..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 295 ~E~~~~g~L~~~l~~~~~-~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~ 370 (495)
T 1opk_A 295 TEFMTYGNLLDYLRECNR-QEVSAVVLLYMATQISSAMEYLEKK---NFIHRNLAARNCLVGENHLVKVADFGLSRLMTG 370 (495)
T ss_dssp EECCTTCBHHHHHHHSCT-TTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEEECCTTCEECCTT
T ss_pred EEccCCCCHHHHHHhcCc-CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChhhEEECCCCcEEEeecccceeccC
Confidence 999999999999986542 4588999999999999999999999 999999999999999999999999999987643
Q ss_pred CCCC-ceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccccccccccccCC--CCCCC
Q 005864 560 GSSN-WTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLSLNEILDP--RLPLP 635 (673)
Q Consensus 560 ~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 635 (673)
.... .....+++.|+|||.+.+..++.++|||||||++|||++ |..||......+. .+.+.. ++..+
T Consensus 371 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~~---------~~~~~~~~~~~~~ 441 (495)
T 1opk_A 371 DTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQV---------YELLEKDYRMERP 441 (495)
T ss_dssp CCEECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGH---------HHHHHTTCCCCCC
T ss_pred CceeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHHH---------HHHHHcCCCCCCC
Confidence 3211 122345678999999998899999999999999999999 9999875432111 111111 12222
Q ss_pred CcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhhC
Q 005864 636 SRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLCK 673 (673)
Q Consensus 636 ~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~~ 673 (673)
. ..+..+.+++.+||+.||++|||+.++++.|++
T Consensus 442 ~----~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~ 475 (495)
T 1opk_A 442 E----GCPEKVYELMRACWQWNPSDRPSFAEIHQAFET 475 (495)
T ss_dssp T----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred C----CCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHH
Confidence 2 233458899999999999999999999999864
No 100
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=100.00 E-value=1.6e-41 Score=366.81 Aligned_cols=252 Identities=23% Similarity=0.294 Sum_probs=209.3
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
++|...+.||+|+||+||+|+.. +|+.||+|++...........+.+.+|+.++.+++||||+++++++.+.+..++||
T Consensus 185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVm 264 (543)
T 3c4z_A 185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVM 264 (543)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEE
Confidence 57888899999999999999875 69999999997655444445678899999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCC-CccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCC
Q 005864 481 ECLERGSLAEILSNDGS-IKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKP 559 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~-~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~ 559 (673)
||+++|+|.+++..... ...+++..+..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++.+..
T Consensus 265 E~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~---gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~ 341 (543)
T 3c4z_A 265 TIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQR---NIIYRDLKPENVLLDDDGNVRISDLGLAVELKA 341 (543)
T ss_dssp CCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECCT
T ss_pred EeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHc---CCcccCCChHHEEEeCCCCEEEeecceeeeccC
Confidence 99999999999976532 34689999999999999999999999 999999999999999999999999999998765
Q ss_pred CCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcch
Q 005864 560 GSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRNI 639 (673)
Q Consensus 560 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (673)
.........||+.|+|||++.+..++.++|||||||++|||++|+.||....... ........+.......+.
T Consensus 342 ~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~----~~~~~~~~i~~~~~~~p~--- 414 (543)
T 3c4z_A 342 GQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKV----ENKELKQRVLEQAVTYPD--- 414 (543)
T ss_dssp TCCCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCC----CHHHHHHHHHHCCCCCCT---
T ss_pred CCcccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccch----hHHHHHHHHhhcccCCCc---
Confidence 5444455689999999999999999999999999999999999999997432110 011112222223333332
Q ss_pred HHHHHHHHHHHHHcccCCCCCCCCH
Q 005864 640 QDKLISILEVALLCLEESPESRPTM 664 (673)
Q Consensus 640 ~~~~~~l~~li~~cl~~dp~~Rps~ 664 (673)
..+..+.+++.+||+.||++||++
T Consensus 415 -~~s~~~~~li~~lL~~dP~~R~~~ 438 (543)
T 3c4z_A 415 -KFSPASKDFCEALLQKDPEKRLGF 438 (543)
T ss_dssp -TSCHHHHHHHHHHSCSSGGGSCCC
T ss_pred -ccCHHHHHHHHHhccCCHhHCCCC
Confidence 233458899999999999999975
No 101
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=100.00 E-value=1.1e-41 Score=343.56 Aligned_cols=254 Identities=30% Similarity=0.480 Sum_probs=201.9
Q ss_pred cCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhhHH----HHHHHHHHHHHhccCCCcccceeeeeecCCee
Q 005864 402 KNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEISV----QREFLNEIKALTEIRHRNIVKFYGFCSHPRHS 476 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 476 (673)
++|++.+.||+|+||+||+|++ .+++.||+|++.......... .+.+.+|+.++++++||||+++++++.+..
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-- 96 (287)
T 4f0f_A 19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP-- 96 (287)
T ss_dssp TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT--
T ss_pred ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC--
Confidence 5788999999999999999977 479999999986543332211 267899999999999999999999997655
Q ss_pred eEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCC--eEEecCCCCCeEeCCCCc-----eEEe
Q 005864 477 FLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPP--IVHRDISSKNVLLSSEYE-----ARVS 549 (673)
Q Consensus 477 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~dlk~~Nill~~~~~-----~kl~ 549 (673)
++||||+++|+|.+++.... ..+++..+..++.|++.||+|||+. + |+||||||+||+++.++. +||+
T Consensus 97 ~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~lH~~---~~~ivH~dikp~Nil~~~~~~~~~~~~kl~ 171 (287)
T 4f0f_A 97 RMVMEFVPCGDLYHRLLDKA--HPIKWSVKLRLMLDIALGIEYMQNQ---NPPIVHRDLRSPNIFLQSLDENAPVCAKVA 171 (287)
T ss_dssp EEEEECCTTCBHHHHHHCTT--SCCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCSCCSGGGEEESCCCTTCSCCEEEC
T ss_pred eEEEEecCCCCHHHHHhccc--CCccHHHHHHHHHHHHHHHHHHHhC---CCCeecCCCCcceEEEeccCCCCceeEEeC
Confidence 69999999999999987654 4689999999999999999999999 7 999999999999988776 9999
Q ss_pred cccceeecCCCCCCceeccccccccccccc--ccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccc
Q 005864 550 DFGIAKFLKPGSSNWTEFAGTFGYVAPELA--YTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEI 627 (673)
Q Consensus 550 Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~--~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~ 627 (673)
|||+++... .......|++.|+|||.+ ....++.++||||+|+++|||++|+.||.......... ........
T Consensus 172 Dfg~~~~~~---~~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~--~~~~~~~~ 246 (287)
T 4f0f_A 172 DFGLSQQSV---HSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKF--INMIREEG 246 (287)
T ss_dssp CCTTCBCCS---SCEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHH--HHHHHHSC
T ss_pred CCCcccccc---ccccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHH--HHHHhccC
Confidence 999997443 233456789999999998 45567899999999999999999999997432211000 00000011
Q ss_pred cCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhhC
Q 005864 628 LDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLCK 673 (673)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~~ 673 (673)
..+ ..+ ...+.++.+++.+||+.||++|||++|+++.|++
T Consensus 247 ~~~--~~~----~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ 286 (287)
T 4f0f_A 247 LRP--TIP----EDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSE 286 (287)
T ss_dssp CCC--CCC----TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred CCC--CCC----cccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHh
Confidence 111 111 1234468999999999999999999999999975
No 102
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=100.00 E-value=1.3e-41 Score=350.59 Aligned_cols=250 Identities=23% Similarity=0.366 Sum_probs=210.3
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
++|.+.+.||+|+||.||+|... +++.||+|++...........+.+.+|+.+++.++||||+++++++.+.+..++||
T Consensus 41 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 120 (335)
T 2owb_A 41 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVL 120 (335)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEE
Confidence 57888999999999999999775 58899999987654444556778999999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
||+++++|.+++... ..+++.++..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||++......
T Consensus 121 e~~~~~~L~~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~ 194 (335)
T 2owb_A 121 ELCRRRSLLELHKRR---KALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYD 194 (335)
T ss_dssp CCCTTCBHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECCST
T ss_pred ecCCCCCHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHHC---CCEecCCCchhEEEcCCCCEEEeeccCceecccC
Confidence 999999999998764 3488999999999999999999999 9999999999999999999999999999987654
Q ss_pred CCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcchH
Q 005864 561 SSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRNIQ 640 (673)
Q Consensus 561 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (673)
........|++.|+|||.+.+..++.++||||||+++|||++|+.||......+ ....+.......+..
T Consensus 195 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~--------~~~~~~~~~~~~~~~--- 263 (335)
T 2owb_A 195 GERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKE--------TYLRIKKNEYSIPKH--- 263 (335)
T ss_dssp TCCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHH--------HHHHHHHTCCCCCTT---
T ss_pred cccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHH--------HHHHHhcCCCCCCcc---
Confidence 444556679999999999999899999999999999999999999997432211 111111122222222
Q ss_pred HHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 641 DKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 641 ~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.+..+.+++.+||+.||++|||++|+++
T Consensus 264 -~~~~~~~li~~~l~~dp~~Rps~~ell~ 291 (335)
T 2owb_A 264 -INPVAASLIQKMLQTDPTARPTINELLN 291 (335)
T ss_dssp -SCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred -CCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 2235889999999999999999999875
No 103
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=100.00 E-value=5.3e-42 Score=350.57 Aligned_cols=263 Identities=20% Similarity=0.317 Sum_probs=191.1
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 479 (673)
.++|++.+.||+|+||+||+|... +|+.||+|+++... .....+.+.+|++++++++||||+++++++..++..++|
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 81 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDS--EEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLV 81 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCS--TTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeeccc--ccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEE
Confidence 357899999999999999999775 68999999987543 222346788999999999999999999999999999999
Q ss_pred EecccCCChHHHHhcCC---CCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceee
Q 005864 480 YECLERGSLAEILSNDG---SIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKF 556 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~---~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~ 556 (673)
|||++ |+|.+++.... ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++..
T Consensus 82 ~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~ 157 (317)
T 2pmi_A 82 FEFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHEN---KILHRDLKPQNLLINKRGQLKLGDFGLARA 157 (317)
T ss_dssp EECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCSSCEE
T ss_pred EEecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCChHHeEEcCCCCEEECcCcccee
Confidence 99998 59999986532 123588999999999999999999999 999999999999999999999999999998
Q ss_pred cCCCCCCceeccccccccccccccc-CCcCcchhHHHHHHHHHHHHhCCCCCccccccccccc-------cccccccc--
Q 005864 557 LKPGSSNWTEFAGTFGYVAPELAYT-MKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSS-------NMNLSLNE-- 626 (673)
Q Consensus 557 ~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~-------~~~~~~~~-- 626 (673)
............+|+.|+|||.+.+ ..++.++||||+||++|||++|+.||......+.... .....+..
T Consensus 158 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 237 (317)
T 2pmi_A 158 FGIPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNESLWPSVT 237 (317)
T ss_dssp TTSCCCCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCTTTCGGGG
T ss_pred cCCCcccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhHhhhhh
Confidence 7654444455678999999999876 4689999999999999999999999974332111000 00000000
Q ss_pred ---ccCCCCCC-CCcch---------HHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 627 ---ILDPRLPL-PSRNI---------QDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 627 ---~~~~~~~~-~~~~~---------~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
...+.... +.... ...+.++.+++.+||+.||++|||++|+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~ 293 (317)
T 2pmi_A 238 KLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALH 293 (317)
T ss_dssp GCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred hhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhC
Confidence 00000000 00000 012346899999999999999999999975
No 104
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=100.00 E-value=4.8e-42 Score=371.40 Aligned_cols=256 Identities=21% Similarity=0.262 Sum_probs=210.0
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 479 (673)
.++|++.+.||+|+||.||+|+.. +|+.||+|++.............+.+|+.++..++|||||++++++.+.+..++|
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 262 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV 262 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence 356889999999999999999775 7999999999765444444567788999999999999999999999999999999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCC
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKP 559 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~ 559 (673)
|||+++|+|.+++...+. ..+++..+..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||++.....
T Consensus 263 mEy~~gg~L~~~l~~~~~-~~l~e~~~~~i~~qIl~aL~yLH~~---gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~ 338 (576)
T 2acx_A 263 LTLMNGGDLKFHIYHMGQ-AGFPEARAVFYAAEICCGLEDLHRE---RIVYRDLKPENILLDDHGHIRISDLGLAVHVPE 338 (576)
T ss_dssp ECCCCSCBHHHHHHSSSS-CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECCT
T ss_pred EEcCCCCcHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCchheEEEeCCCCeEEEecccceeccc
Confidence 999999999999987542 4489999999999999999999999 999999999999999999999999999987754
Q ss_pred CCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcch
Q 005864 560 GSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRNI 639 (673)
Q Consensus 560 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (673)
.. ......||+.|+|||++.+..++.++||||+||++|||++|+.||........ .......+.......+
T Consensus 339 ~~-~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~----~~~i~~~i~~~~~~~p---- 409 (576)
T 2acx_A 339 GQ-TIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIK----REEVERLVKEVPEEYS---- 409 (576)
T ss_dssp TC-CEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCC----HHHHHHHHHHCCCCCC----
T ss_pred Cc-cccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchh----HHHHHHHhhcccccCC----
Confidence 32 33456899999999999998999999999999999999999999974321100 0001111111111222
Q ss_pred HHHHHHHHHHHHHcccCCCCCCC-----CHHHHHH
Q 005864 640 QDKLISILEVALLCLEESPESRP-----TMQTVCQ 669 (673)
Q Consensus 640 ~~~~~~l~~li~~cl~~dp~~Rp-----s~~~v~~ 669 (673)
...+.++.+++.+||+.||++|| +++|+++
T Consensus 410 ~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~ 444 (576)
T 2acx_A 410 ERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKE 444 (576)
T ss_dssp TTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred ccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHh
Confidence 12334688999999999999999 7888874
No 105
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=100.00 E-value=6.5e-42 Score=342.13 Aligned_cols=250 Identities=20% Similarity=0.313 Sum_probs=203.0
Q ss_pred cCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecC--CeeeEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHP--RHSFLV 479 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~lv 479 (673)
++|++.+.||+|+||+||+|++. |+.||||+++.... .....+.+.+|+.++++++||||+++++++.++ +..++|
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (271)
T 3kmu_A 10 KQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDW-STRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLI 87 (271)
T ss_dssp GGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTC-CHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEE
T ss_pred HHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEeccccc-CHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEee
Confidence 57889999999999999999984 89999999876432 233467799999999999999999999999876 778999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCC--eEEecCCCCCeEeCCCCceEEecccceeec
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPP--IVHRDISSKNVLLSSEYEARVSDFGIAKFL 557 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~ 557 (673)
|||+++|+|.+++..... ..+++..+..++.|++.||+|||+. + ++||||||+||+++.++.++++|||++...
T Consensus 88 ~e~~~~~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~ 163 (271)
T 3kmu_A 88 THWMPYGSLYNVLHEGTN-FVVDQSQAVKFALDMARGMAFLHTL---EPLIPRHALNSRSVMIDEDMTARISMADVKFSF 163 (271)
T ss_dssp EECCTTCBHHHHHHSCSS-CCCCHHHHHHHHHHHHHHHHHHTTS---SSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTT
T ss_pred ecccCCCcHHHHHhhccc-CCCCHHHHHHHHHHHHHHHHHHhcC---CCceecCCCccceEEEcCCcceeEEeccceeee
Confidence 999999999999987542 3589999999999999999999998 7 999999999999999999999999987643
Q ss_pred CCCCCCceecccccccccccccccCCcCc---chhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCC
Q 005864 558 KPGSSNWTEFAGTFGYVAPELAYTMKVTE---KCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPL 634 (673)
Q Consensus 558 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~---~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (673)
.. ....+|+.|+|||.+.+..++. ++||||||+++|||++|+.||......+... ........+ ..
T Consensus 164 ~~-----~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~----~~~~~~~~~--~~ 232 (271)
T 3kmu_A 164 QS-----PGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGM----KVALEGLRP--TI 232 (271)
T ss_dssp SC-----TTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHHHH----HHHHSCCCC--CC
T ss_pred cc-----cCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHHHH----HHHhcCCCC--CC
Confidence 22 2346789999999998765554 7999999999999999999997433211100 000011111 11
Q ss_pred CCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 635 PSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 635 ~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
+. ..+.++.+++.+||+.||++|||++|+++.|+
T Consensus 233 ~~----~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~ 266 (271)
T 3kmu_A 233 PP----GISPHVSKLMKICMNEDPAKRPKFDMIVPILE 266 (271)
T ss_dssp CT----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CC----CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 11 22345889999999999999999999999986
No 106
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.8e-42 Score=349.22 Aligned_cols=250 Identities=27% Similarity=0.457 Sum_probs=195.9
Q ss_pred cCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEEe
Q 005864 402 KNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVYE 481 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 481 (673)
++|++.+.||+|+||+||+|++ .++.||||++... ...+.+.+|+.++++++||||+++++++.+ ..++|||
T Consensus 8 ~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~-----~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~lv~e 79 (307)
T 2eva_A 8 KEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIESE-----SERKAFIVELRQLSRVNHPNIVKLYGACLN--PVCLVME 79 (307)
T ss_dssp GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEECSST-----THHHHHHHHHHHHHHCCCTTBCCEEEBCTT--TTEEEEE
T ss_pred hHeeeeeEeecCCCceEEEEEE-CCeeEEEEEecCh-----hHHHHHHHHHHHHhcCCCCCcCeEEEEEcC--CcEEEEE
Confidence 5688899999999999999988 4789999998642 235788999999999999999999999874 4789999
Q ss_pred cccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCc-eEEecccceeecCCC
Q 005864 482 CLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYE-ARVSDFGIAKFLKPG 560 (673)
Q Consensus 482 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~-~kl~Dfg~~~~~~~~ 560 (673)
|+++|+|.+++........+++..+..++.|+++||+|||+....+|+||||||+||+++.++. +||+|||++......
T Consensus 80 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~ 159 (307)
T 2eva_A 80 YAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH 159 (307)
T ss_dssp CCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC-------
T ss_pred cCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccc
Confidence 9999999999987765456788999999999999999999932128999999999999998876 799999999765322
Q ss_pred CCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCC-CCCCCCcch
Q 005864 561 SSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDP-RLPLPSRNI 639 (673)
Q Consensus 561 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 639 (673)
.....||+.|+|||.+.+..++.++||||||+++|||++|+.||+....... ......... ..+.+
T Consensus 160 ---~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~------~~~~~~~~~~~~~~~---- 226 (307)
T 2eva_A 160 ---MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAF------RIMWAVHNGTRPPLI---- 226 (307)
T ss_dssp --------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHH------HHHHHHHTTCCCCCB----
T ss_pred ---cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHH------HHHHHHhcCCCCCcc----
Confidence 2335689999999999999999999999999999999999999874321100 000001111 11111
Q ss_pred HHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 640 QDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 640 ~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
...+..+.+++.+||+.||++|||++|+++.|+
T Consensus 227 ~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~ 259 (307)
T 2eva_A 227 KNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMT 259 (307)
T ss_dssp TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhcCChhhCcCHHHHHHHHH
Confidence 123345889999999999999999999999885
No 107
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=100.00 E-value=2.3e-42 Score=355.60 Aligned_cols=254 Identities=17% Similarity=0.216 Sum_probs=204.6
Q ss_pred cCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhcc-CCCcccceeeeeecCCeeeEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEI-RHRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv 479 (673)
++|++.+.||+|+||+||+|.. .+|+.||||++..... .+.+.+|+.+++++ +||||+++++++..++..++|
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv 83 (330)
T 2izr_A 9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR-----APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMV 83 (330)
T ss_dssp TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS-----SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEE
T ss_pred CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc-----hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEE
Confidence 5789999999999999999976 5799999999864321 24578899999999 999999999999999999999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCc-----eEEecccce
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYE-----ARVSDFGIA 554 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~-----~kl~Dfg~~ 554 (673)
|||+ +++|.+++.... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++. +||+|||++
T Consensus 84 ~e~~-~~~L~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~LH~~---~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a 157 (330)
T 2izr_A 84 LELL-GPSLEDLFDLCD--RTFSLKTVLMIAIQLISRMEYVHSK---NLIYRDVKPENFLIGRPGNKTQQVIHIIDFALA 157 (330)
T ss_dssp EECC-CCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTCTTSEEECCCTTC
T ss_pred EEeC-CCCHHHHHHHcC--CCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeeccCCCCCCceEEEEEcccc
Confidence 9999 899999998653 4689999999999999999999999 9999999999999998887 999999999
Q ss_pred eecCCCCCC-------ceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccc
Q 005864 555 KFLKPGSSN-------WTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEI 627 (673)
Q Consensus 555 ~~~~~~~~~-------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~ 627 (673)
+........ .....||+.|+|||++.+..++.++||||||+++|||++|+.||........ ......+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~-----~~~~~~i 232 (330)
T 2izr_A 158 KEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTL-----KERYQKI 232 (330)
T ss_dssp EESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSH-----HHHHHHH
T ss_pred eeeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccH-----HHHHHHH
Confidence 976543321 2456799999999999999999999999999999999999999974321110 0111111
Q ss_pred cCCCCCCCCcch-HHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 628 LDPRLPLPSRNI-QDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 628 ~~~~~~~~~~~~-~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
.....+.+.... ...+ ++.+++..||+.||.+||+++++.+.|+
T Consensus 233 ~~~~~~~~~~~~~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~ 277 (330)
T 2izr_A 233 GDTKRATPIEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFT 277 (330)
T ss_dssp HHHHHHSCHHHHTTTCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHH
T ss_pred HhhhccCCHHHHhccCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 111111110000 0122 6999999999999999999999999885
No 108
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=100.00 E-value=6.3e-42 Score=353.77 Aligned_cols=247 Identities=27% Similarity=0.414 Sum_probs=201.9
Q ss_pred cCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
+.|+..+.||+|+||+||+|+. .+|+.||||++...........+.+.+|++++++++||||+++++++..++..++||
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 133 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM 133 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence 4588889999999999999976 579999999987654444455678999999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
||++ |+|.+++.... ..+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||++......
T Consensus 134 e~~~-g~l~~~l~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~ 207 (348)
T 1u5q_A 134 EYCL-GSASDLLEVHK--KPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA 207 (348)
T ss_dssp ECCS-EEHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB
T ss_pred ecCC-CCHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEeeccCceecCCC
Confidence 9998 58888886543 4589999999999999999999999 9999999999999999999999999999865432
Q ss_pred CCCceecccccccccccccc---cCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCC-CCC
Q 005864 561 SSNWTEFAGTFGYVAPELAY---TMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLP-LPS 636 (673)
Q Consensus 561 ~~~~~~~~~~~~y~aPE~~~---~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 636 (673)
....||+.|+|||++. ...++.++|||||||++|||++|+.||......... ..+.....+ ...
T Consensus 208 ----~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~--------~~~~~~~~~~~~~ 275 (348)
T 1u5q_A 208 ----NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSAL--------YHIAQNESPALQS 275 (348)
T ss_dssp ----CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHH--------HHHHHSCCCCCCC
T ss_pred ----CcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHH--------HHHHhcCCCCCCC
Confidence 3457899999999984 567899999999999999999999998643322111 011111111 111
Q ss_pred cchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 637 RNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 637 ~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
...+..+.+++.+||+.||++|||++|+++
T Consensus 276 ---~~~~~~l~~li~~~l~~dP~~Rps~~~ll~ 305 (348)
T 1u5q_A 276 ---GHWSEYFRNFVDSCLQKIPQDRPTSEVLLK 305 (348)
T ss_dssp ---TTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred ---CCCCHHHHHHHHHHcccChhhCcCHHHHhh
Confidence 122345889999999999999999999975
No 109
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=100.00 E-value=1e-41 Score=359.42 Aligned_cols=265 Identities=20% Similarity=0.298 Sum_probs=210.9
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCC--eeeE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPR--HSFL 478 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~--~~~l 478 (673)
++|.+.+.||+|+||+||+|++. +|+.||||++...... ...+.+.+|++++++++||||+++++++...+ ..++
T Consensus 9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~l 86 (396)
T 4eut_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFL--RPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVL 86 (396)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGG--SCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEE
T ss_pred CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEecccccc--chHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEE
Confidence 56889999999999999999775 5999999998754322 23567889999999999999999999998655 6799
Q ss_pred EEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEe----CCCCceEEecccce
Q 005864 479 VYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLL----SSEYEARVSDFGIA 554 (673)
Q Consensus 479 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill----~~~~~~kl~Dfg~~ 554 (673)
||||+++|+|.+++........+++..++.++.|++.||+|||+. +|+||||||+||++ +.++.+||+|||++
T Consensus 87 v~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a 163 (396)
T 4eut_A 87 IMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAA 163 (396)
T ss_dssp EECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEECTTSCEEEEECCGGGC
T ss_pred EEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCcCHHHEEEeecCCCceeEEEecCCCc
Confidence 999999999999998765444589999999999999999999999 99999999999999 77788999999999
Q ss_pred eecCCCCCCceeccccccccccccccc--------CCcCcchhHHHHHHHHHHHHhCCCCCccccccccccccc------
Q 005864 555 KFLKPGSSNWTEFAGTFGYVAPELAYT--------MKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNM------ 620 (673)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~y~aPE~~~~--------~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~------ 620 (673)
+...... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||.............
T Consensus 164 ~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~ 242 (396)
T 4eut_A 164 RELEDDE-QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITG 242 (396)
T ss_dssp EECCCGG-GSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHHS
T ss_pred eEccCCC-ccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhcC
Confidence 8765432 2334678999999998865 567889999999999999999999986432211100000
Q ss_pred --ccc---cc------cccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 621 --NLS---LN------EILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 621 --~~~---~~------~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
... .. -.....++............+.+++.+||+.||++||+++|+++.++
T Consensus 243 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~ 305 (396)
T 4eut_A 243 KPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETS 305 (396)
T ss_dssp CCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHH
T ss_pred CCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHH
Confidence 000 00 00112233333444677788999999999999999999999998875
No 110
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=8.1e-42 Score=353.95 Aligned_cols=256 Identities=22% Similarity=0.369 Sum_probs=205.9
Q ss_pred HhcCCCccceeccCCcEEEEEEEe------CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhcc-CCCcccceeeeeec
Q 005864 400 ATKNFDAEQCIGIGGQASVYRGEL------PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEI-RHRNIVKFYGFCSH 472 (673)
Q Consensus 400 ~~~~~~~~~~ig~G~~g~vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~ 472 (673)
..++|++.+.||+|+||+||+|.+ .+++.||||++.... .....+.+.+|+.++.++ +||||+++++++..
T Consensus 43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~ 120 (344)
T 1rjb_A 43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKA--DSSEREALMSELKMMTQLGSHENIVNLLGACTL 120 (344)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC--------CHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEeccccc--CHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEee
Confidence 457899999999999999999975 246689999987542 223457899999999999 89999999999999
Q ss_pred CCeeeEEEecccCCChHHHHhcCCCC--------------------ccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEec
Q 005864 473 PRHSFLVYECLERGSLAEILSNDGSI--------------------KEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRD 532 (673)
Q Consensus 473 ~~~~~lv~e~~~~gsL~~~l~~~~~~--------------------~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~d 532 (673)
++..++||||+++|+|.+++...... ..+++..+..++.|++.||+|||+. +|+|||
T Consensus 121 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~D 197 (344)
T 1rjb_A 121 SGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SCVHRD 197 (344)
T ss_dssp SSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TEEETT
T ss_pred CCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CcccCC
Confidence 99999999999999999999875421 2378999999999999999999999 999999
Q ss_pred CCCCCeEeCCCCceEEecccceeecCCCCCC--ceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcc
Q 005864 533 ISSKNVLLSSEYEARVSDFGIAKFLKPGSSN--WTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDF 609 (673)
Q Consensus 533 lk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~ 609 (673)
|||+||+++.++.+||+|||++......... .....+|+.|+|||.+.+..++.++||||||+++|||+| |..||..
T Consensus 198 ikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~ 277 (344)
T 1rjb_A 198 LAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPG 277 (344)
T ss_dssp CSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTT
T ss_pred CChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCccc
Confidence 9999999999999999999999876543322 223456789999999998999999999999999999998 9999874
Q ss_pred cccccccccccccccccccCCC--CCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 610 ISLLSSSSSNMNLSLNEILDPR--LPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
...... ....+... ...+. ..+.++.+++.+||+.||.+|||+.|+++.|+
T Consensus 278 ~~~~~~--------~~~~~~~~~~~~~~~----~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~ 330 (344)
T 1rjb_A 278 IPVDAN--------FYKLIQNGFKMDQPF----YATEEIYIIMQSCWAFDSRKRPSFPNLTSFLG 330 (344)
T ss_dssp CCCSHH--------HHHHHHTTCCCCCCT----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CCcHHH--------HHHHHhcCCCCCCCC----CCCHHHHHHHHHHcCCCchhCcCHHHHHHHHH
Confidence 322111 11111111 11111 22345889999999999999999999999885
No 111
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=100.00 E-value=2.5e-41 Score=352.15 Aligned_cols=262 Identities=25% Similarity=0.412 Sum_probs=211.8
Q ss_pred cHHHHHHHhcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchh-----hhhHHHHHHHHHHHHHhcc-CCCcccc
Q 005864 393 VYEEIIRATKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLL-----SEISVQREFLNEIKALTEI-RHRNIVK 465 (673)
Q Consensus 393 ~~~~~~~~~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~-----~~~~~~~~~~~e~~~l~~l-~h~niv~ 465 (673)
.+.......++|++.+.||+|+||.||+|.+. +|+.||||++..... ......+.+.+|+.++.++ +||||++
T Consensus 85 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~ 164 (365)
T 2y7j_A 85 DWAAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIIT 164 (365)
T ss_dssp HHHHHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCC
T ss_pred cchhhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeE
Confidence 44555566778999999999999999999875 799999999865431 1123356788999999999 7999999
Q ss_pred eeeeeecCCeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCc
Q 005864 466 FYGFCSHPRHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYE 545 (673)
Q Consensus 466 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~ 545 (673)
+++++...+..++||||+++|+|.+++... ..+++..+..++.||+.||.|||+. +++||||||+||+++.++.
T Consensus 165 ~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~---~~l~~~~~~~i~~qi~~~L~~LH~~---gi~H~Dlkp~NIl~~~~~~ 238 (365)
T 2y7j_A 165 LIDSYESSSFMFLVFDLMRKGELFDYLTEK---VALSEKETRSIMRSLLEAVSFLHAN---NIVHRDLKPENILLDDNMQ 238 (365)
T ss_dssp EEEEEEBSSEEEEEECCCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCC
T ss_pred EEEEEeeCCEEEEEEEeCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCC
Confidence 999999999999999999999999999764 3588999999999999999999999 9999999999999999999
Q ss_pred eEEecccceeecCCCCCCceeccccccccccccccc------CCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccc
Q 005864 546 ARVSDFGIAKFLKPGSSNWTEFAGTFGYVAPELAYT------MKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSN 619 (673)
Q Consensus 546 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~ 619 (673)
+||+|||++..+.... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||......
T Consensus 239 ikl~DfG~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~------ 311 (365)
T 2y7j_A 239 IRLSDFGFSCHLEPGE-KLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQI------ 311 (365)
T ss_dssp EEECCCTTCEECCTTC-CBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHH------
T ss_pred EEEEecCcccccCCCc-ccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCHH------
Confidence 9999999998875433 3345679999999998863 35888999999999999999999998642211
Q ss_pred cccccccccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 620 MNLSLNEILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.....+.......+...+...+..+.+++.+||+.||++|||+.|+++
T Consensus 312 --~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~ 359 (365)
T 2y7j_A 312 --LMLRMIMEGQYQFSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQ 359 (365)
T ss_dssp --HHHHHHHHTCCCCCHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred --HHHHHHHhCCCCCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 111111222222221112223456899999999999999999999986
No 112
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=100.00 E-value=1.3e-41 Score=349.09 Aligned_cols=257 Identities=22% Similarity=0.366 Sum_probs=192.1
Q ss_pred HhcCCCccceeccCCcEEEEEEEeCC-C---CEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCe
Q 005864 400 ATKNFDAEQCIGIGGQASVYRGELPS-G---EVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRH 475 (673)
Q Consensus 400 ~~~~~~~~~~ig~G~~g~vy~~~~~~-~---~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~ 475 (673)
..++|++.+.||+|+||+||+|.+.. + ..||||+++..... ....+.+.+|++++++++||||+++++++...+.
T Consensus 21 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 99 (323)
T 3qup_A 21 PEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIA-SSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRA 99 (323)
T ss_dssp C---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC-------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC--
T ss_pred ChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccC-HHHHHHHHHHHHHHHHCCCCceehhhceeecccc
Confidence 34679999999999999999998754 3 27999998764322 3346789999999999999999999999987665
Q ss_pred e------eEEEecccCCChHHHHhcCC---CCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCce
Q 005864 476 S------FLVYECLERGSLAEILSNDG---SIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEA 546 (673)
Q Consensus 476 ~------~lv~e~~~~gsL~~~l~~~~---~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~ 546 (673)
. ++||||+++|+|.+++.... ....+++..+..++.|+++||+|||+. +|+||||||+||++++++.+
T Consensus 100 ~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~Dikp~NIli~~~~~~ 176 (323)
T 3qup_A 100 KGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSR---NFIHRDLAARNCMLAEDMTV 176 (323)
T ss_dssp -----CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCE
T ss_pred ccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcC---CcccCCCCcceEEEcCCCCE
Confidence 5 99999999999999996532 112589999999999999999999999 99999999999999999999
Q ss_pred EEecccceeecCCCCC--CceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccccccc
Q 005864 547 RVSDFGIAKFLKPGSS--NWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLS 623 (673)
Q Consensus 547 kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~ 623 (673)
||+|||+++....... ......+++.|+|||.+.+..++.++||||||+++|||++ |+.||......+ .
T Consensus 177 kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~--------~ 248 (323)
T 3qup_A 177 CVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAE--------I 248 (323)
T ss_dssp EECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG--------H
T ss_pred EEeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHH--------H
Confidence 9999999987644322 1223456788999999999999999999999999999999 999987433211 1
Q ss_pred cccccCC-CCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 624 LNEILDP-RLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 624 ~~~~~~~-~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
...+... ....+. ..+.++.+++.+||+.||++|||+.++++.|+
T Consensus 249 ~~~~~~~~~~~~~~----~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~ 294 (323)
T 3qup_A 249 YNYLIGGNRLKQPP----ECMEEVYDLMYQCWSADPKQRPSFTCLRMELE 294 (323)
T ss_dssp HHHHHTTCCCCCCT----TCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHH
T ss_pred HHHHhcCCCCCCCC----ccCHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence 1111111 112121 22345889999999999999999999999886
No 113
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=100.00 E-value=1.2e-41 Score=345.87 Aligned_cols=260 Identities=24% Similarity=0.341 Sum_probs=204.1
Q ss_pred cCCCccceeccCCcEEEEEEEe-----CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecC--C
Q 005864 402 KNFDAEQCIGIGGQASVYRGEL-----PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHP--R 474 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~ 474 (673)
+.|++.+.||+|+||.||+|++ .+|+.||+|++.... .....+.+.+|++++.+++||||+++++++... .
T Consensus 21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~ 98 (302)
T 4e5w_A 21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPES--GGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGN 98 (302)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-------CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---C
T ss_pred hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccc--cchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCc
Confidence 4588899999999999999983 468999999987543 223457889999999999999999999999876 6
Q ss_pred eeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccce
Q 005864 475 HSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIA 554 (673)
Q Consensus 475 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~ 554 (673)
..++||||+++|+|.+++.... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 99 ~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~ 173 (302)
T 4e5w_A 99 GIKLIMEFLPSGSLKEYLPKNK--NKINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLT 173 (302)
T ss_dssp CEEEEEECCTTCBHHHHHHHHT--TTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTC
T ss_pred eEEEEEEeCCCCcHHHHHHhcc--ccCCHHHHHHHHHHHHHHHHHhhcC---CcccCCCchheEEEcCCCCEEECccccc
Confidence 6899999999999999996543 3588999999999999999999999 9999999999999999999999999999
Q ss_pred eecCCCCCC---ceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccc------cccccccc-c
Q 005864 555 KFLKPGSSN---WTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSS------SSSNMNLS-L 624 (673)
Q Consensus 555 ~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~------~~~~~~~~-~ 624 (673)
......... .....+|..|+|||.+.+..++.++||||+|+++|||++|..|+........ ........ .
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (302)
T 4e5w_A 174 KAIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLV 253 (302)
T ss_dssp EECCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHH
T ss_pred ccccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHH
Confidence 887654332 2345678889999999999999999999999999999999998653211100 00000000 1
Q ss_pred ccccC-CCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 625 NEILD-PRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 625 ~~~~~-~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
..... ...+.+. ..+.++.+++.+||+.||.+|||++|+++.|+
T Consensus 254 ~~~~~~~~~~~~~----~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~ 298 (302)
T 4e5w_A 254 NTLKEGKRLPCPP----NCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFE 298 (302)
T ss_dssp HHHHTTCCCCCCT----TCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHH
T ss_pred HHHhccCCCCCCC----CCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Confidence 11111 1112221 23346889999999999999999999999986
No 114
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=100.00 E-value=1.5e-41 Score=340.69 Aligned_cols=250 Identities=24% Similarity=0.323 Sum_probs=206.5
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 479 (673)
.++|++.+.||+|+||+||+|... ++..||+|++...... ..+.+.+|++++++++||||+++++++.+++..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~---~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv 84 (277)
T 3f3z_A 8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVE---DVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLV 84 (277)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCS---CHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccc---hHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEE
Confidence 457899999999999999999775 5789999998764332 356789999999999999999999999999999999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEe---CCCCceEEecccceee
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLL---SSEYEARVSDFGIAKF 556 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill---~~~~~~kl~Dfg~~~~ 556 (673)
|||+++++|.+++...+ .+++..+..++.|++.||+|||+. +++||||||+||++ +.++.+||+|||++..
T Consensus 85 ~e~~~~~~L~~~~~~~~---~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~ 158 (277)
T 3f3z_A 85 MELCTGGELFERVVHKR---VFRESDAARIMKDVLSAVAYCHKL---NVAHRDLKPENFLFLTDSPDSPLKLIDFGLAAR 158 (277)
T ss_dssp EECCCSCBHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCTTCEE
T ss_pred EeccCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEecCCCCCcEEEEeccccee
Confidence 99999999999987653 488999999999999999999999 99999999999999 7788999999999987
Q ss_pred cCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCC
Q 005864 557 LKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPS 636 (673)
Q Consensus 557 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (673)
..... ......||+.|+|||.+.+ .++.++||||+|+++|||++|+.||...... .....+.......+.
T Consensus 159 ~~~~~-~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--------~~~~~~~~~~~~~~~ 228 (277)
T 3f3z_A 159 FKPGK-MMRTKVGTPYYVSPQVLEG-LYGPECDEWSAGVMMYVLLCGYPPFSAPTDS--------EVMLKIREGTFTFPE 228 (277)
T ss_dssp CCTTS-CBCCCCSCTTTCCHHHHTT-CBCTTHHHHHHHHHHHHHHHSSCSSCCSSHH--------HHHHHHHHCCCCCCH
T ss_pred ccCcc-chhccCCCCCccChHHhcc-cCCchhhehhHHHHHHHHHHCCCCCCCCCHH--------HHHHHHHhCCCCCCc
Confidence 75433 3345678999999998865 4899999999999999999999998743221 112222222333322
Q ss_pred cchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 637 RNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 637 ~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
..+...+..+.+++.+||+.||++|||+.|+++
T Consensus 229 ~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~ 261 (277)
T 3f3z_A 229 KDWLNVSPQAESLIRRLLTKSPKQRITSLQALE 261 (277)
T ss_dssp HHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred hhhhcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 222234567899999999999999999999875
No 115
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.9e-41 Score=348.58 Aligned_cols=246 Identities=20% Similarity=0.327 Sum_probs=204.8
Q ss_pred HhcCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhh-----HHHHHHHHHHHHHhccCCCcccceeeeeecC
Q 005864 400 ATKNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEI-----SVQREFLNEIKALTEIRHRNIVKFYGFCSHP 473 (673)
Q Consensus 400 ~~~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~-----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~ 473 (673)
..++|++.+.||+|+||+||+|.. .+|+.||||++........ ...+.+.+|+.++++++||||+++++++.+.
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~ 101 (335)
T 3dls_A 22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQ 101 (335)
T ss_dssp HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeC
Confidence 356899999999999999999975 4689999999876532211 1234577899999999999999999999999
Q ss_pred CeeeEEEecccCC-ChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEeccc
Q 005864 474 RHSFLVYECLERG-SLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFG 552 (673)
Q Consensus 474 ~~~~lv~e~~~~g-sL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg 552 (673)
+..++||||+.+| +|.+++.... .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 102 ~~~~lv~e~~~~g~~l~~~~~~~~---~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~Dfg 175 (335)
T 3dls_A 102 GFFQLVMEKHGSGLDLFAFIDRHP---RLDEPLASYIFRQLVSAVGYLRLK---DIIHRDIKDENIVIAEDFTIKLIDFG 175 (335)
T ss_dssp SEEEEEEECCTTSCBHHHHHHTCC---CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCT
T ss_pred CEEEEEEEeCCCCccHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeEEeccCHHHEEEcCCCcEEEeecc
Confidence 9999999999777 9999998753 488999999999999999999999 99999999999999999999999999
Q ss_pred ceeecCCCCCCceecccccccccccccccCCc-CcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCC
Q 005864 553 IAKFLKPGSSNWTEFAGTFGYVAPELAYTMKV-TEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPR 631 (673)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (673)
++....... ......||+.|+|||++.+..+ +.++||||||+++|||++|+.||..... .....
T Consensus 176 ~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~--------------~~~~~ 240 (335)
T 3dls_A 176 SAAYLERGK-LFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEE--------------TVEAA 240 (335)
T ss_dssp TCEECCTTC-CBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGG--------------GTTTC
T ss_pred cceECCCCC-ceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHH--------------HHhhc
Confidence 998775443 3345679999999999988776 7899999999999999999999874221 11111
Q ss_pred CCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 005864 632 LPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQL 670 (673)
Q Consensus 632 ~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~ 670 (673)
...+.. .+.++.+++.+||+.||++|||++|+++.
T Consensus 241 ~~~~~~----~~~~l~~li~~~L~~dP~~Rps~~ell~h 275 (335)
T 3dls_A 241 IHPPYL----VSKELMSLVSGLLQPVPERRTTLEKLVTD 275 (335)
T ss_dssp CCCSSC----CCHHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred cCCCcc----cCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 221211 23358899999999999999999999863
No 116
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=6.2e-43 Score=355.64 Aligned_cols=255 Identities=24% Similarity=0.340 Sum_probs=186.4
Q ss_pred cCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhc--cCCCcccceeeeeecCC----e
Q 005864 402 KNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTE--IRHRNIVKFYGFCSHPR----H 475 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~l~~~~~~~~----~ 475 (673)
++|.+.+.||+|+||+||+|++ +|+.||||++... ....+.+|.+++.. ++||||+++++++.... .
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~------~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~ 75 (303)
T 3gxj_A 3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR------EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQ 75 (303)
T ss_dssp GGCCCCEEEEECSSSEEEEC-C-TTSCEEEEECC-T------THHHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSEE
T ss_pred ceeeehhhccCCCCeEEEEEEE-cCcceEEEEeccc------chhhHHHHHHHHHHHhccCcceeeeeeecccCCCccce
Confidence 5799999999999999999987 4899999998643 23556778888887 79999999999998766 7
Q ss_pred eeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHh--------hcCCCCeEEecCCCCCeEeCCCCceE
Q 005864 476 SFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMH--------HDCFPPIVHRDISSKNVLLSSEYEAR 547 (673)
Q Consensus 476 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH--------~~~~~~ivH~dlk~~Nill~~~~~~k 547 (673)
.++||||+++|+|.++++.. .+++..+..++.|++.||+||| +. +|+||||||+||+++.++.+|
T Consensus 76 ~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nil~~~~~~~k 148 (303)
T 3gxj_A 76 LWLVSDYHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILVKKNGTCC 148 (303)
T ss_dssp EEEEEECCTTCCHHHHHHHC----CBCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC----CCCSCCCGGGC-CCTTCCC-
T ss_pred eEEEEeccCCCCHHHHHhcc----CcchHHHHHHHHHHHHHHHHHHHHHhhhccCC---CEeeCcCCHHHeEECCCCCEE
Confidence 89999999999999999764 4788889999999999999999 77 999999999999999999999
Q ss_pred EecccceeecCCCCCC----ceecccccccccccccccC------CcCcchhHHHHHHHHHHHHhC----------CCCC
Q 005864 548 VSDFGIAKFLKPGSSN----WTEFAGTFGYVAPELAYTM------KVTEKCDVYSFGVLALEVIKG----------KHPR 607 (673)
Q Consensus 548 l~Dfg~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~------~~~~~~Dv~slG~il~el~~g----------~~p~ 607 (673)
|+|||++......... .....||+.|+|||.+.+. .++.++||||||+++|||++| +.||
T Consensus 149 l~DFg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~p~ 228 (303)
T 3gxj_A 149 IADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPY 228 (303)
T ss_dssp BCCCCC-CCEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHC-CCCC-CTGGGBCBTTBC-CCCCTT
T ss_pred EeecCcceeccCCCcccccccCCCCcCccccCHhhhcCcccccccccCcchhHHHHHHHHHHHHhcCCCccccceeeccc
Confidence 9999999766443322 2334789999999998766 455789999999999999999 5555
Q ss_pred cccccccccccccccccccccCCCCCCC-Cc--chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhhC
Q 005864 608 DFISLLSSSSSNMNLSLNEILDPRLPLP-SR--NIQDKLISILEVALLCLEESPESRPTMQTVCQLLCK 673 (673)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~~ 673 (673)
........ ........+........ .. .....+..+.+++.+||+.||++|||++|+++.|++
T Consensus 229 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~ 294 (303)
T 3gxj_A 229 YDLVPSDP---SVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQ 294 (303)
T ss_dssp TTTCC-CC---CCC-CHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHC
T ss_pred cccCCCCc---cHHHHHHHHHHhhcCCCccccccchhhHHHHHHHHHHHhccCcccCCCHHHHHHHHHH
Confidence 42211110 01111111112221111 11 112556679999999999999999999999999974
No 117
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.8e-41 Score=346.24 Aligned_cols=261 Identities=22% Similarity=0.332 Sum_probs=199.8
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
++|++.+.||+|+||+||+|... +|+.||+|++.... ......+.+.+|+.++++++||||+++++++..++..++||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 81 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESE-DDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVF 81 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCC-C-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccc-cchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEE
Confidence 57889999999999999999775 59999999986543 23344677889999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
||+++++|.+++... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++......
T Consensus 82 e~~~~~~l~~~~~~~---~~~~~~~~~~i~~~l~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 155 (311)
T 4agu_A 82 EYCDHTVLHELDRYQ---RGVPEHLVKSITWQTLQAVNFCHKH---NCIHRDVKPENILITKHSVIKLCDFGFARLLTGP 155 (311)
T ss_dssp ECCSEEHHHHHHHTS---SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECC--
T ss_pred EeCCCchHHHHHhhh---cCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCChhhEEEcCCCCEEEeeCCCchhccCc
Confidence 999999999988765 3488999999999999999999999 9999999999999999999999999999887655
Q ss_pred CCCceeccccccccccccccc-CCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccc---c---------ccccc
Q 005864 561 SSNWTEFAGTFGYVAPELAYT-MKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMN---L---------SLNEI 627 (673)
Q Consensus 561 ~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~---~---------~~~~~ 627 (673)
........+++.|+|||.+.+ ..++.++||||+|+++|||++|+.||......+....... . .....
T Consensus 156 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (311)
T 4agu_A 156 SDYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQY 235 (311)
T ss_dssp ----------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTCGG
T ss_pred ccccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcccccccccccccccc
Confidence 444556678999999999876 6689999999999999999999999975432211000000 0 00000
Q ss_pred -cCCCCCCCCc------chHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 628 -LDPRLPLPSR------NIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 628 -~~~~~~~~~~------~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.....+.+.. .....+.++.+++.+||+.||++|||++|+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 284 (311)
T 4agu_A 236 FSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLH 284 (311)
T ss_dssp GTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred cccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhc
Confidence 0001111000 01123456889999999999999999999985
No 118
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=100.00 E-value=1e-41 Score=347.74 Aligned_cols=260 Identities=23% Similarity=0.328 Sum_probs=197.8
Q ss_pred cCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
++|++.+.||+|+||.||+|.. .+|+.||+|++...........+.+.+|+.++++++||||+++++++..++..++||
T Consensus 32 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 111 (310)
T 2wqm_A 32 ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL 111 (310)
T ss_dssp GGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred cceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEEE
Confidence 5689999999999999999976 479999999987644344556778999999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCC-CCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCC
Q 005864 481 ECLERGSLAEILSNDG-SIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKP 559 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~ 559 (673)
||+++|+|.+++.... ....+++..++.++.|++.||.|||+. +++||||||+||+++.++.+||+|||++.....
T Consensus 112 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~ 188 (310)
T 2wqm_A 112 ELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFFSS 188 (310)
T ss_dssp ECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCC--------
T ss_pred ecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCcHHHEEEcCCCCEEEEeccceeeecC
Confidence 9999999999997521 124588999999999999999999999 999999999999999999999999999987654
Q ss_pred CCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcch
Q 005864 560 GSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRNI 639 (673)
Q Consensus 560 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (673)
.........+++.|+|||.+.+..++.++||||||+++|||++|+.||....... ......+.....+.. ..
T Consensus 189 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~------~~~~~~~~~~~~~~~--~~ 260 (310)
T 2wqm_A 189 KTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNL------YSLCKKIEQCDYPPL--PS 260 (310)
T ss_dssp ----------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCH------HHHHHHHHTTCSCCC--CT
T ss_pred CCccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhH------HHHHHHhhcccCCCC--cc
Confidence 4444445678999999999999999999999999999999999999986422110 000111111111110 01
Q ss_pred HHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 640 QDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 640 ~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
...+.++.+++.+||+.||++|||++++++.|+
T Consensus 261 ~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~ 293 (310)
T 2wqm_A 261 DHYSEELRQLVNMCINPDPEKRPDVTYVYDVAK 293 (310)
T ss_dssp TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCChhhCCCHHHHHHHHH
Confidence 123346889999999999999999999999886
No 119
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=100.00 E-value=3.9e-41 Score=338.84 Aligned_cols=248 Identities=25% Similarity=0.409 Sum_probs=207.5
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
++|++.+.||+|+||.||+|... +++.||+|++...........+.+.+|++++.+++||||+++++++.+++..++||
T Consensus 14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 93 (284)
T 2vgo_A 14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLML 93 (284)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEE
Confidence 57889999999999999999775 58899999987654444444577899999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
||+++|+|.+++...+ .+++..+..++.|++.||+|||+. +++||||||+||+++.++.+||+|||++......
T Consensus 94 e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~ 167 (284)
T 2vgo_A 94 EFAPRGELYKELQKHG---RFDEQRSATFMEELADALHYCHER---KVIHRDIKPENLLMGYKGELKIADFGWSVHAPSL 167 (284)
T ss_dssp CCCTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTCCEEECCCTTCEECSSS
T ss_pred EeCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEEcCCCCEEEecccccccCccc
Confidence 9999999999998653 488999999999999999999999 9999999999999999999999999999765432
Q ss_pred CCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcchH
Q 005864 561 SSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRNIQ 640 (673)
Q Consensus 561 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (673)
......|++.|+|||.+.+..++.++||||||+++|||++|+.||+.....+ ....+.......+..
T Consensus 168 --~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~--------~~~~~~~~~~~~~~~--- 234 (284)
T 2vgo_A 168 --RRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTE--------THRRIVNVDLKFPPF--- 234 (284)
T ss_dssp --CBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH--------HHHHHHTTCCCCCTT---
T ss_pred --ccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHhH--------HHHHHhccccCCCCc---
Confidence 2344678999999999999999999999999999999999999997432211 111222222222222
Q ss_pred HHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 641 DKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 641 ~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.+..+.+++.+||+.||.+|||++|+++
T Consensus 235 -~~~~~~~li~~~l~~~p~~Rps~~~ll~ 262 (284)
T 2vgo_A 235 -LSDGSKDLISKLLRYHPPQRLPLKGVME 262 (284)
T ss_dssp -SCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred -CCHHHHHHHHHHhhcCHhhCCCHHHHhh
Confidence 2345889999999999999999999985
No 120
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=1.1e-41 Score=339.82 Aligned_cols=250 Identities=26% Similarity=0.425 Sum_probs=206.4
Q ss_pred cCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEEe
Q 005864 402 KNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVYE 481 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 481 (673)
++|++.+.||+|+||.||+|.+.+++.||+|++...... .+.+.+|++++.+++||||+++++++.+++..++|||
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~----~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 83 (267)
T 3t9t_A 8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMS----EEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTE 83 (267)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTBC----HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEEC
T ss_pred hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCCC----HHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEe
Confidence 578889999999999999999988999999998764322 3678899999999999999999999999999999999
Q ss_pred cccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCCC
Q 005864 482 CLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPGS 561 (673)
Q Consensus 482 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~ 561 (673)
|+++++|.+++.... ..+++..+..++.|++.||+|||+. +++||||||+||+++.++.+||+|||++.......
T Consensus 84 ~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~ 158 (267)
T 3t9t_A 84 FMEHGCLSDYLRTQR--GLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ 158 (267)
T ss_dssp CCTTCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHH
T ss_pred CCCCCcHHHHHhhCc--ccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEECCCCCEEEccccccccccccc
Confidence 999999999998653 4578999999999999999999999 99999999999999999999999999998653321
Q ss_pred -CCceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccccccccccccCC-CCCCCCcc
Q 005864 562 -SNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLSLNEILDP-RLPLPSRN 638 (673)
Q Consensus 562 -~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 638 (673)
.......+++.|+|||.+.+..++.++||||+|+++|||++ |+.||......+ ....+... ....+.
T Consensus 159 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~--------~~~~i~~~~~~~~~~-- 228 (267)
T 3t9t_A 159 YTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE--------VVEDISTGFRLYKPR-- 228 (267)
T ss_dssp HHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH--------HHHHHHTTCCCCCCT--
T ss_pred ccccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHHH--------HHHHHhcCCcCCCCc--
Confidence 11223456788999999998899999999999999999999 899987432211 11111111 111111
Q ss_pred hHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 639 IQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 639 ~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
..+..+.+++.+||+.||++|||++|+++.|+
T Consensus 229 --~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~ 260 (267)
T 3t9t_A 229 --LASTHVYQIMNHCWRERPEDRPAFSRLLRQLA 260 (267)
T ss_dssp --TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred --cCcHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence 12345889999999999999999999999986
No 121
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=100.00 E-value=2.5e-41 Score=348.52 Aligned_cols=256 Identities=23% Similarity=0.358 Sum_probs=206.4
Q ss_pred hcCCCccceeccCCcEEEEEEEe--------CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhcc-CCCcccceeeeee
Q 005864 401 TKNFDAEQCIGIGGQASVYRGEL--------PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEI-RHRNIVKFYGFCS 471 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~--------~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~ 471 (673)
.++|++.+.||+|+||+||+|++ .+++.||||++.... .....+.+.+|++++.++ +||||+++++++.
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~ 111 (334)
T 2pvf_A 34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA--TEKDLSDLVSEMEMMKMIGKHKNIINLLGACT 111 (334)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCC--cHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEc
Confidence 46789999999999999999976 357789999987542 233567899999999999 8999999999999
Q ss_pred cCCeeeEEEecccCCChHHHHhcCCC-------------CccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCe
Q 005864 472 HPRHSFLVYECLERGSLAEILSNDGS-------------IKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNV 538 (673)
Q Consensus 472 ~~~~~~lv~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Ni 538 (673)
.++..++||||+++|+|.+++..... ...+++..++.++.|+++||+|||+. +|+||||||+||
T Consensus 112 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NI 188 (334)
T 2pvf_A 112 QDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNV 188 (334)
T ss_dssp SSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGE
T ss_pred cCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCccceE
Confidence 99999999999999999999986542 13488999999999999999999999 999999999999
Q ss_pred EeCCCCceEEecccceeecCCCCCC--ceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccc
Q 005864 539 LLSSEYEARVSDFGIAKFLKPGSSN--WTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSS 615 (673)
Q Consensus 539 ll~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~ 615 (673)
+++.++.+||+|||++......... .....+++.|+|||++.+..++.++||||||+++|||++ |+.||......+.
T Consensus 189 ll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~ 268 (334)
T 2pvf_A 189 LVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEEL 268 (334)
T ss_dssp EECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHH
T ss_pred EEcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHHHH
Confidence 9999999999999999876543321 223456788999999998899999999999999999999 9999874322111
Q ss_pred cccccccccccccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 616 SSSNMNLSLNEILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
. ....... ....+. ..+..+.+++.+||+.||.+|||+.|+++.|+
T Consensus 269 ~-----~~~~~~~--~~~~~~----~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~ 314 (334)
T 2pvf_A 269 F-----KLLKEGH--RMDKPA----NCTNELYMMMRDCWHAVPSQRPTFKQLVEDLD 314 (334)
T ss_dssp H-----HHHHHTC--CCCCCT----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred H-----HHHhcCC--CCCCCc----cCCHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence 0 0000000 111111 22345889999999999999999999999886
No 122
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=100.00 E-value=2.1e-41 Score=340.70 Aligned_cols=253 Identities=22% Similarity=0.340 Sum_probs=204.2
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhh---HHHHHHHHHHHHHhccCCCcccceeeeeecCCeee
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEI---SVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSF 477 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 477 (673)
++|++.+.||+|+||+||+|... +|+.||+|.++....... ...+.+.+|+.++++++||||+++++++.+++..+
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 84 (283)
T 3bhy_A 5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV 84 (283)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence 56889999999999999999876 699999999876432221 13578899999999999999999999999999999
Q ss_pred EEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCC----ceEEecccc
Q 005864 478 LVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEY----EARVSDFGI 553 (673)
Q Consensus 478 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~----~~kl~Dfg~ 553 (673)
+||||+++++|.+++... ..+++..+..++.|++.||+|||+. +++||||||+||+++.++ .+||+|||+
T Consensus 85 lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~ 158 (283)
T 3bhy_A 85 LILELVSGGELFDFLAEK---ESLTEDEATQFLKQILDGVHYLHSK---RIAHFDLKPENIMLLDKNVPNPRIKLIDFGI 158 (283)
T ss_dssp EEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSSSSCCEEECCCTT
T ss_pred EEEeecCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChHHEEEecCCCCCCceEEEeccc
Confidence 999999999999999764 3588999999999999999999999 999999999999998877 799999999
Q ss_pred eeecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCC
Q 005864 554 AKFLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLP 633 (673)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (673)
+....... ......+++.|+|||.+.+..++.++||||||+++|||++|+.||......+ ....+......
T Consensus 159 ~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~--------~~~~~~~~~~~ 229 (283)
T 3bhy_A 159 AHKIEAGN-EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQE--------TLTNISAVNYD 229 (283)
T ss_dssp CEECC---------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHHH--------HHHHHHTTCCC
T ss_pred ceeccCCC-cccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchHH--------HHHHhHhcccC
Confidence 98765432 2344568999999999998899999999999999999999999987432211 11111111222
Q ss_pred CCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 634 LPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 634 ~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.+.......+..+.+++.+||+.||++|||+.|+++
T Consensus 230 ~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 265 (283)
T 3bhy_A 230 FDEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLE 265 (283)
T ss_dssp CCHHHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred CcchhcccCCHHHHHHHHHHccCCHhHCcCHHHHHh
Confidence 221122233456899999999999999999999986
No 123
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=7e-41 Score=345.95 Aligned_cols=262 Identities=25% Similarity=0.359 Sum_probs=197.0
Q ss_pred HHhcCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhcc--CCCcccceeeeeecC---
Q 005864 399 RATKNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEI--RHRNIVKFYGFCSHP--- 473 (673)
Q Consensus 399 ~~~~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l--~h~niv~l~~~~~~~--- 473 (673)
...++|++.+.||+|+||.||+|+.. |+.||||++.... ...+..|.+++... +||||+++++++...
T Consensus 34 ~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~------~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~ 106 (337)
T 3mdy_A 34 TIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTTE------EASWFRETEIYQTVLMRHENILGFIAADIKGTGS 106 (337)
T ss_dssp THHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGGG------HHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGG
T ss_pred ccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEeccc------cchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCC
Confidence 34578999999999999999999885 8999999985431 23344455555554 899999999999876
Q ss_pred -CeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcC-----CCCeEEecCCCCCeEeCCCCceE
Q 005864 474 -RHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDC-----FPPIVHRDISSKNVLLSSEYEAR 547 (673)
Q Consensus 474 -~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~-----~~~ivH~dlk~~Nill~~~~~~k 547 (673)
...++||||+++|+|.++++.. .+++..+..++.|++.||+|||+.+ .++|+||||||+||+++.++.+|
T Consensus 107 ~~~~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~k 182 (337)
T 3mdy_A 107 WTQLYLITDYHENGSLYDYLKST----TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCC 182 (337)
T ss_dssp GCEEEEEECCCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEE
T ss_pred CCceEEEEeccCCCcHHHHhhcc----CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEE
Confidence 6789999999999999999764 4889999999999999999999762 23899999999999999999999
Q ss_pred EecccceeecCCCCCC----ceecccccccccccccccCCcCcc------hhHHHHHHHHHHHHhC----------CCCC
Q 005864 548 VSDFGIAKFLKPGSSN----WTEFAGTFGYVAPELAYTMKVTEK------CDVYSFGVLALEVIKG----------KHPR 607 (673)
Q Consensus 548 l~Dfg~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~------~Dv~slG~il~el~~g----------~~p~ 607 (673)
|+|||++......... .....||+.|+|||++.+...+.+ +|||||||++|||++| +.||
T Consensus 183 l~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~ 262 (337)
T 3mdy_A 183 IADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPY 262 (337)
T ss_dssp ECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTT
T ss_pred EEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccH
Confidence 9999999876543322 124578999999999987766654 9999999999999999 4554
Q ss_pred cccccccccccccc-cccccccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 608 DFISLLSSSSSNMN-LSLNEILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 608 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
.............. ........+..+. .......+.++.+++.+||+.||++|||+.|+++.|+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~ 327 (337)
T 3mdy_A 263 HDLVPSDPSYEDMREIVCIKKLRPSFPN-RWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLA 327 (337)
T ss_dssp TTTSCSSCCHHHHHHHHTTSCCCCCCCG-GGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHH
T ss_pred hhhcCCCCchhhhHHHHhhhccCccccc-cchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHH
Confidence 32211110000000 0000111111111 0112356778999999999999999999999999986
No 124
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=100.00 E-value=1e-41 Score=365.21 Aligned_cols=252 Identities=25% Similarity=0.429 Sum_probs=201.4
Q ss_pred hcCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
.++|++.+.||+|+||+||+|.+.++..||||+++.... ..+.|.+|++++++++||||+++++++.+ +..++||
T Consensus 183 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~ 257 (452)
T 1fmk_A 183 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM----SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVT 257 (452)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS----CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEE
T ss_pred hhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCC----CHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEe
Confidence 457888999999999999999998888999999875432 24678999999999999999999999876 6789999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
||+++|+|.+++.... ...+++..+..++.|++.||+|||++ +|+||||||+||++++++.+||+|||+++.....
T Consensus 258 e~~~~gsL~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~ 333 (452)
T 1fmk_A 258 EYMSKGSLLDFLKGET-GKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDN 333 (452)
T ss_dssp CCCTTCBHHHHHSHHH-HTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCTTC-----
T ss_pred hhhcCCCHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEECCCCCEEECCCccceecCCC
Confidence 9999999999997532 13478899999999999999999999 9999999999999999999999999999876433
Q ss_pred CC-CceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccccccccccccC-CCCCCCCc
Q 005864 561 SS-NWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLSLNEILD-PRLPLPSR 637 (673)
Q Consensus 561 ~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 637 (673)
.. ......+++.|+|||.+.+..++.++||||||+++|||++ |+.||......+. ...+.. .+++.+.
T Consensus 334 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~--------~~~i~~~~~~~~~~- 404 (452)
T 1fmk_A 334 EYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREV--------LDQVERGYRMPCPP- 404 (452)
T ss_dssp ---------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHH--------HHHHHTTCCCCCCT-
T ss_pred ceecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHHH--------HHHHHcCCCCCCCC-
Confidence 22 1233456789999999998999999999999999999999 9999874322111 111111 1222222
Q ss_pred chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhhC
Q 005864 638 NIQDKLISILEVALLCLEESPESRPTMQTVCQLLCK 673 (673)
Q Consensus 638 ~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~~ 673 (673)
..+..+.+++.+||+.||++|||++++++.|++
T Consensus 405 ---~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~ 437 (452)
T 1fmk_A 405 ---ECPESLHDLMCQCWRKEPEERPTFEYLQAFLED 437 (452)
T ss_dssp ---TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred ---CCCHHHHHHHHHHccCChhhCcCHHHHHHHHHH
Confidence 234468899999999999999999999999864
No 125
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=100.00 E-value=1.4e-41 Score=342.84 Aligned_cols=258 Identities=24% Similarity=0.399 Sum_probs=194.4
Q ss_pred hcCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
.++|++.+.||+|+||+||+|+.. ..||+|+++.... .....+.+.+|+.++++++||||+++++++ .....++||
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~ 98 (289)
T 3og7_A 23 DGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAP-TPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVT 98 (289)
T ss_dssp TTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEE
T ss_pred ccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCC-CHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEE
Confidence 467999999999999999999874 3599999875432 334567899999999999999999999976 455689999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
||+++++|.+++.... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++......
T Consensus 99 e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 173 (289)
T 3og7_A 99 QWCEGSSLYHHLHASE--TKFEMKKLIDIARQTARGMDYLHAK---SIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRW 173 (289)
T ss_dssp ECCCEEEHHHHHTTC-----CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEEEECCCC--------
T ss_pred EecCCCcHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEECCCCCEEEccceeccccccc
Confidence 9999999999997653 4589999999999999999999999 9999999999999999999999999999865432
Q ss_pred --CCCceecccccccccccccc---cCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCC
Q 005864 561 --SSNWTEFAGTFGYVAPELAY---TMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLP 635 (673)
Q Consensus 561 --~~~~~~~~~~~~y~aPE~~~---~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (673)
........||+.|+|||.+. +..++.++||||+|+++|||++|+.||......+... .........+...
T Consensus 174 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~---~~~~~~~~~~~~~-- 248 (289)
T 3og7_A 174 SGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQII---EMVGRGSLSPDLS-- 248 (289)
T ss_dssp ----------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHHHH---HHHHHTSCCCCTT--
T ss_pred cccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHHHH---HHhcccccCcchh--
Confidence 22234467899999999986 6678889999999999999999999997432211100 0000001111111
Q ss_pred CcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhhC
Q 005864 636 SRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLCK 673 (673)
Q Consensus 636 ~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~~ 673 (673)
......+..+.+++.+||+.||.+|||++|+++.|++
T Consensus 249 -~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~ 285 (289)
T 3og7_A 249 -KVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEE 285 (289)
T ss_dssp -SSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred -hccccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHH
Confidence 1112234568999999999999999999999999863
No 126
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=100.00 E-value=1.4e-41 Score=353.28 Aligned_cols=252 Identities=24% Similarity=0.293 Sum_probs=194.5
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 479 (673)
.++|++.+.||+|+||+||+|+.. +|+.||||++...... .+.+.+|+.+++.++||||+++++++.+++..++|
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 94 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAI----DENVQREIINHRSLRHPNIVRFKEVILTPTHLAII 94 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTS----CHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCccc----cHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEE
Confidence 357999999999999999999775 7999999998754322 35678999999999999999999999999999999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCc--eEEecccceeec
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYE--ARVSDFGIAKFL 557 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~--~kl~Dfg~~~~~ 557 (673)
|||+++|+|.+++...+ .+++..+..++.|++.||+|||++ +|+||||||+||+++.++. +||+|||+++..
T Consensus 95 ~e~~~~~~L~~~l~~~~---~~~~~~~~~i~~ql~~~L~~LH~~---~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~ 168 (361)
T 3uc3_A 95 MEYASGGELYERICNAG---RFSEDEARFFFQQLLSGVSYCHSM---QICHRDLKLENTLLDGSPAPRLKICDFGYSKSS 168 (361)
T ss_dssp EECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCSCCCCGGGEEECSSSSCCEEECCCCCC---
T ss_pred EEeCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCceEEEeecCccccc
Confidence 99999999999997653 488999999999999999999999 9999999999999987765 999999999754
Q ss_pred CCCCCCceecccccccccccccccCCcCcc-hhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCC
Q 005864 558 KPGSSNWTEFAGTFGYVAPELAYTMKVTEK-CDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPS 636 (673)
Q Consensus 558 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~-~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (673)
... .......||+.|+|||++.+..++.+ +||||+||++|||++|+.||......... ......+.......+.
T Consensus 169 ~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~----~~~~~~~~~~~~~~~~ 243 (361)
T 3uc3_A 169 VLH-SQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDY----RKTIQRILSVKYSIPD 243 (361)
T ss_dssp -------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCH----HHHHHHHHTTCCCCCT
T ss_pred ccc-CCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHH----HHHHHHHhcCCCCCCC
Confidence 322 22344679999999999988887665 89999999999999999999754322111 1111222222222221
Q ss_pred cchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 637 RNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 637 ~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
. ...+.++.+++.+||+.||++|||+.|+++
T Consensus 244 ~--~~~s~~~~~li~~~L~~dP~~Rps~~ell~ 274 (361)
T 3uc3_A 244 D--IRISPECCHLISRIFVADPATRISIPEIKT 274 (361)
T ss_dssp T--SCCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred c--CCCCHHHHHHHHHHccCChhHCcCHHHHHh
Confidence 1 112345889999999999999999999985
No 127
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=100.00 E-value=3.1e-41 Score=355.27 Aligned_cols=251 Identities=23% Similarity=0.316 Sum_probs=192.4
Q ss_pred cCCCcc-ceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhc-cCCCcccceeeeeec----CC
Q 005864 402 KNFDAE-QCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTE-IRHRNIVKFYGFCSH----PR 474 (673)
Q Consensus 402 ~~~~~~-~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~-l~h~niv~l~~~~~~----~~ 474 (673)
++|.+. +.||+|+||+||+|... +|+.||||++... ..+.+|++++.+ .+||||+++++++.. .+
T Consensus 61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~--------~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~ 132 (400)
T 1nxk_A 61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC--------PKARREVELHWRASQCPHIVRIVDVYENLYAGRK 132 (400)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS--------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEE
T ss_pred ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc--------hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCc
Confidence 355555 68999999999999765 6899999998532 345678887754 489999999999865 56
Q ss_pred eeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCC---CCceEEecc
Q 005864 475 HSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSS---EYEARVSDF 551 (673)
Q Consensus 475 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~---~~~~kl~Df 551 (673)
..++||||+++|+|.+++...+. ..+++..+..++.||+.||+|||+. +|+||||||+||+++. ++.+||+||
T Consensus 133 ~~~lv~E~~~gg~L~~~l~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~~~kl~DF 208 (400)
T 1nxk_A 133 CLLIVMECLDGGELFSRIQDRGD-QAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDF 208 (400)
T ss_dssp EEEEEEECCCSEEHHHHHHCC----CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSTTCCEEECCC
T ss_pred EEEEEEEeCCCCcHHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCcceEEEecCCCCccEEEEec
Confidence 78999999999999999987532 4589999999999999999999999 9999999999999997 788999999
Q ss_pred cceeecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCC
Q 005864 552 GIAKFLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPR 631 (673)
Q Consensus 552 g~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (673)
|+++..... .......||+.|+|||++.+..++.++|||||||++|||++|+.||......... ......+....
T Consensus 209 G~a~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~----~~~~~~i~~~~ 283 (400)
T 1nxk_A 209 GFAKETTSH-NSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAIS----PGMKTRIRMGQ 283 (400)
T ss_dssp TTCEECC------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSC----CSHHHHHHHTC
T ss_pred ccccccCCC-CccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCcccccc----HHHHHHHHcCc
Confidence 999876432 2234567899999999999999999999999999999999999999743322110 00111122222
Q ss_pred CCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 632 LPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 632 ~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
...+...+...+.++.+++.+||+.||++|||+.|+++
T Consensus 284 ~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~ 321 (400)
T 1nxk_A 284 YEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN 321 (400)
T ss_dssp CCCCTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred ccCCCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 22222222344556899999999999999999999986
No 128
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=100.00 E-value=2.8e-42 Score=348.10 Aligned_cols=254 Identities=25% Similarity=0.410 Sum_probs=208.5
Q ss_pred HhcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeE
Q 005864 400 ATKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFL 478 (673)
Q Consensus 400 ~~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 478 (673)
..++|++.+.||+|+||+||+|.+. +++.||+|.+.... ...+.+.+|+.++++++||||+++++++.+++..++
T Consensus 11 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 86 (288)
T 3kfa_A 11 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT----MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYI 86 (288)
T ss_dssp CGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS----THHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEE
T ss_pred cccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH----HHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEE
Confidence 4567889999999999999999776 48899999986532 236778999999999999999999999999999999
Q ss_pred EEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecC
Q 005864 479 VYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLK 558 (673)
Q Consensus 479 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~ 558 (673)
||||+++++|.+++..... ..+++..+..++.|++.||+|||+. +++||||||+||+++.++.+||+|||++....
T Consensus 87 v~e~~~~~~L~~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~ 162 (288)
T 3kfa_A 87 ITEFMTYGNLLDYLRECNR-QEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMT 162 (288)
T ss_dssp EEECCTTEEHHHHHHHCCT-TTSCHHHHHHHHHHHHHHHHHHHHH---TCCCSCCSGGGEEECGGGCEEECCCCGGGTSC
T ss_pred EEEcCCCCcHHHHHHhccc-CCccHhHHHHHHHHHHHHHHHHHHC---CccCCCCCcceEEEcCCCCEEEccCccceecc
Confidence 9999999999999987543 4589999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCCC-ceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccccccccccccCCCCCCCC
Q 005864 559 PGSSN-WTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPS 636 (673)
Q Consensus 559 ~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (673)
..... .....+++.|+|||.+.+..++.++||||+|+++|+|++ |..||........ ........ ....+
T Consensus 163 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~~-----~~~~~~~~--~~~~~- 234 (288)
T 3kfa_A 163 GDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQV-----YELLEKDY--RMERP- 234 (288)
T ss_dssp SSSSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGH-----HHHHHTTC--CCCCC-
T ss_pred CCccccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHH-----HHHHhccC--CCCCC-
Confidence 43322 223456788999999998899999999999999999999 9999874322111 00111111 11111
Q ss_pred cchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 637 RNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 637 ~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
...+..+.+++.+||+.||++|||++|+++.|+
T Consensus 235 ---~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~ 267 (288)
T 3kfa_A 235 ---EGCPEKVYELMRACWQWNPSDRPSFAEIHQAFE 267 (288)
T ss_dssp ---TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHH
Confidence 122346889999999999999999999999885
No 129
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=100.00 E-value=2.5e-41 Score=342.92 Aligned_cols=255 Identities=18% Similarity=0.251 Sum_probs=205.0
Q ss_pred cCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhcc-CCCcccceeeeeecCCeeeEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEI-RHRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv 479 (673)
++|++.+.||+|+||+||+|.. .+|+.||||++.... ..+.+.+|+.++..+ +|+|++++++++..+...++|
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-----~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv 84 (298)
T 1csn_A 10 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS-----DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLV 84 (298)
T ss_dssp TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT-----TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEE
T ss_pred cceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC-----ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEE
Confidence 5789999999999999999976 579999999886432 134577899999999 799999999999999999999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCc-----eEEecccce
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYE-----ARVSDFGIA 554 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~-----~kl~Dfg~~ 554 (673)
|||+ +++|.+++...+ ..+++..+..++.|+++||+|||+. +|+||||||+||+++.++. +||+|||++
T Consensus 85 ~e~~-~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~ 158 (298)
T 1csn_A 85 IDLL-GPSLEDLLDLCG--RKFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMV 158 (298)
T ss_dssp EECC-CCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTCEEECCCTTC
T ss_pred EEec-CCCHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEeccCCCCCCCeEEEEECccc
Confidence 9999 999999998754 3589999999999999999999999 9999999999999987776 999999999
Q ss_pred eecCCCCC-------CceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccc
Q 005864 555 KFLKPGSS-------NWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEI 627 (673)
Q Consensus 555 ~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~ 627 (673)
........ ......||+.|+|||.+.+..++.++||||||+++|||++|+.||........ ......+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~-----~~~~~~~ 233 (298)
T 1csn_A 159 KFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATN-----KQKYERI 233 (298)
T ss_dssp EESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCH-----HHHHHHH
T ss_pred cccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhcccc-----HHHHHHH
Confidence 98754332 12446789999999999999999999999999999999999999975322111 0000000
Q ss_pred cCCCCCCC-CcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 628 LDPRLPLP-SRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 628 ~~~~~~~~-~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
.......+ .......+.++.+++.+||+.||++|||++++++.|+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~ 279 (298)
T 1csn_A 234 GEKKQSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFS 279 (298)
T ss_dssp HHHHHHSCHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHH
T ss_pred HhhccCccHHHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHH
Confidence 00000000 0001123456899999999999999999999999886
No 130
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=100.00 E-value=9.6e-42 Score=355.77 Aligned_cols=261 Identities=17% Similarity=0.232 Sum_probs=200.3
Q ss_pred hcCCCccceeccCCcEEEEEEEeCC------CCEEEEEeeccchhhhhHH--------HHHHHHHHHHHhccCCCcccce
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELPS------GEVVAVKKFHSLLLSEISV--------QREFLNEIKALTEIRHRNIVKF 466 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~~------~~~vavK~~~~~~~~~~~~--------~~~~~~e~~~l~~l~h~niv~l 466 (673)
.++|++.+.||+|+||+||+|.+.. ++.||||++.........+ ...+..|+..+..++||||+++
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~ 113 (364)
T 3op5_A 34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY 113 (364)
T ss_dssp CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence 4579999999999999999997754 4789999986543211111 1234556777888899999999
Q ss_pred eeeeecC----CeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeC-
Q 005864 467 YGFCSHP----RHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLS- 541 (673)
Q Consensus 467 ~~~~~~~----~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~- 541 (673)
++++... ...++||||+ +++|.+++.... ..+++..+..++.||+.||+|||+. +|+||||||+||+++
T Consensus 114 ~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~--~~l~~~~~~~i~~qi~~~l~~lH~~---~iiHrDlkp~Nill~~ 187 (364)
T 3op5_A 114 WGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANA--KRFSRKTVLQLSLRILDILEYIHEH---EYVHGDIKASNLLLNY 187 (364)
T ss_dssp EEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTT--SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEES
T ss_pred EeeeeeccCCcceEEEEEeCC-CCCHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeEEecCCHHHEEEec
Confidence 9998764 4579999999 999999998753 4589999999999999999999999 999999999999999
Q ss_pred -CCCceEEecccceeecCCCCCC-------ceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccc
Q 005864 542 -SEYEARVSDFGIAKFLKPGSSN-------WTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLL 613 (673)
Q Consensus 542 -~~~~~kl~Dfg~~~~~~~~~~~-------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~ 613 (673)
.++.+||+|||+++.+...... .....||+.|+|||++.+..++.++|||||||++|||++|+.||......
T Consensus 188 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~ 267 (364)
T 3op5_A 188 KNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKD 267 (364)
T ss_dssp SCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTC
T ss_pred CCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccC
Confidence 8899999999999876433211 13345999999999999999999999999999999999999999742211
Q ss_pred cccccc----cccccccccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 614 SSSSSN----MNLSLNEILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 614 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
...... ......+.+++.++. ...+.++.+++..||+.||++||+++++++.|+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~ 325 (364)
T 3op5_A 268 PKYVRDSKIRYRENIASLMDKCFPA-----ANAPGEIAKYMETVKLLDYTEKPLYENLRDILL 325 (364)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHSCT-----TCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHhccc-----ccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Confidence 100000 001111122211110 012346889999999999999999999999885
No 131
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2e-41 Score=353.06 Aligned_cols=251 Identities=26% Similarity=0.405 Sum_probs=191.9
Q ss_pred CCCccceeccCCcEEEEEEEeC--CC--CEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeec-CCeee
Q 005864 403 NFDAEQCIGIGGQASVYRGELP--SG--EVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSH-PRHSF 477 (673)
Q Consensus 403 ~~~~~~~ig~G~~g~vy~~~~~--~~--~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~-~~~~~ 477 (673)
.|++.+.||+|+||+||+|.+. ++ ..||||.+... ......+.+.+|+.++++++||||+++++++.+ ++..+
T Consensus 90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~ 167 (373)
T 3c1x_A 90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRI--TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPL 167 (373)
T ss_dssp EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSC--SCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCE
T ss_pred eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCC--CCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeE
Confidence 4667789999999999999763 22 36899988653 233457889999999999999999999999754 56789
Q ss_pred EEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeec
Q 005864 478 LVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFL 557 (673)
Q Consensus 478 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~ 557 (673)
+||||+++|+|.+++.... ..+++..+..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++..
T Consensus 168 lv~e~~~~g~L~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~ 242 (373)
T 3c1x_A 168 VVLPYMKHGDLRNFIRNET--HNPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDM 242 (373)
T ss_dssp EEEECCTTCBHHHHHHCTT--CCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC------
T ss_pred EEEECCCCCCHHHHHhhcc--cCCCHHHHHHHHHHHHHHHHHHHHC---CEecCccchheEEECCCCCEEEeeccccccc
Confidence 9999999999999998654 4578899999999999999999999 9999999999999999999999999999866
Q ss_pred CCCCC----CceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccccccccccccCCC-
Q 005864 558 KPGSS----NWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLSLNEILDPR- 631 (673)
Q Consensus 558 ~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~- 631 (673)
..... ......+++.|+|||.+.+..++.++||||||+++|||++ |..||......+. ...+....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~--------~~~~~~~~~ 314 (373)
T 3c1x_A 243 YDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDI--------TVYLLQGRR 314 (373)
T ss_dssp ---------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCH--------HHHHHTTCC
T ss_pred cccccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHH--------HHHHHcCCC
Confidence 43221 1233456789999999999999999999999999999999 6777764322111 11111111
Q ss_pred CCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 632 LPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 632 ~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
...+. ..+..+.+++.+||+.||++|||++|+++.|+
T Consensus 315 ~~~p~----~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~ 351 (373)
T 3c1x_A 315 LLQPE----YCPDPLYEVMLKCWHPKAEMRPSFSELVSRIS 351 (373)
T ss_dssp CCCCT----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CCCCC----CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 11111 22345889999999999999999999999886
No 132
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=4.9e-41 Score=345.74 Aligned_cols=252 Identities=27% Similarity=0.462 Sum_probs=198.6
Q ss_pred cCCCccceeccCCcEEEEEEEeCC-----CCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCee
Q 005864 402 KNFDAEQCIGIGGQASVYRGELPS-----GEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHS 476 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~~-----~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 476 (673)
.+|...+.||+|+||+||+|.... +..||||.++... .......+.+|+.++.+++||||+++++++...+..
T Consensus 44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 121 (333)
T 1mqb_A 44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY--TEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPM 121 (333)
T ss_dssp TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSE
T ss_pred HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCC--CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCc
Confidence 456678999999999999997642 2469999987542 233466799999999999999999999999999999
Q ss_pred eEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceee
Q 005864 477 FLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKF 556 (673)
Q Consensus 477 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~ 556 (673)
++||||+++|+|.+++.... ..+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||++..
T Consensus 122 ~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~ 196 (333)
T 1mqb_A 122 MIITEYMENGALDKFLREKD--GEFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSDFGLSRV 196 (333)
T ss_dssp EEEEECCTTEEHHHHHHHTT--TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC---
T ss_pred EEEEeCCCCCcHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChheEEECCCCcEEECCCCcchh
Confidence 99999999999999998653 4588999999999999999999999 999999999999999999999999999987
Q ss_pred cCCCCCC---ceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccccccccccccCC-C
Q 005864 557 LKPGSSN---WTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLSLNEILDP-R 631 (673)
Q Consensus 557 ~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~ 631 (673)
....... .....+++.|+|||.+.+..++.++||||||+++|||++ |+.||......+ ....+.+. +
T Consensus 197 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~--------~~~~~~~~~~ 268 (333)
T 1mqb_A 197 LEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHE--------VMKAINDGFR 268 (333)
T ss_dssp --------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH--------HHHHHHTTCC
T ss_pred hccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHHH--------HHHHHHCCCc
Confidence 6543221 122345788999999998899999999999999999999 999986432211 11111111 1
Q ss_pred CCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 632 LPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 632 ~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
.+.+. ..+..+.+++.+||+.||++||++.|+++.|+
T Consensus 269 ~~~~~----~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~ 305 (333)
T 1mqb_A 269 LPTPM----DCPSAIYQLMMQCWQQERARRPKFADIVSILD 305 (333)
T ss_dssp CCCCT----TCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHH
T ss_pred CCCcc----cCCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 22222 23345889999999999999999999999886
No 133
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=100.00 E-value=7.4e-42 Score=358.29 Aligned_cols=245 Identities=14% Similarity=0.135 Sum_probs=192.8
Q ss_pred hcCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhhHHHHHHHHHH---HHHhccCCCccccee-------ee
Q 005864 401 TKNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEISVQREFLNEI---KALTEIRHRNIVKFY-------GF 469 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~---~~l~~l~h~niv~l~-------~~ 469 (673)
.++|.+.+.||+|+||+||+|.+ .+|+.||||++...........+.+.+|+ ..+++++|||||+++ ++
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 35788899999999999999986 46999999999765444444578899999 555566899999998 55
Q ss_pred eecCC-----------------eeeEEEecccCCChHHHHhcCC----CCccchHHHHHHHHHHHHHHHHHHhhcCCCCe
Q 005864 470 CSHPR-----------------HSFLVYECLERGSLAEILSNDG----SIKEFSWIVRTNVIKSVANALSYMHHDCFPPI 528 (673)
Q Consensus 470 ~~~~~-----------------~~~lv~e~~~~gsL~~~l~~~~----~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~i 528 (673)
+..++ ..++||||+ +|+|.+++...+ ....+++..+..|+.||+.||+|||++ +|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~i 227 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GL 227 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHT---TE
T ss_pred hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhC---Ce
Confidence 55443 278999999 579999997642 123466788999999999999999999 99
Q ss_pred EEecCCCCCeEeCCCCceEEecccceeecCCCCCCceecccccccccccccccC-----------CcCcchhHHHHHHHH
Q 005864 529 VHRDISSKNVLLSSEYEARVSDFGIAKFLKPGSSNWTEFAGTFGYVAPELAYTM-----------KVTEKCDVYSFGVLA 597 (673)
Q Consensus 529 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-----------~~~~~~Dv~slG~il 597 (673)
+||||||+||+++.++.+||+|||+++... .......| +.|+|||++.+. .++.++|||||||++
T Consensus 228 vHrDikp~NIll~~~~~~kL~DFG~a~~~~---~~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il 303 (377)
T 3byv_A 228 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDG---ARVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVI 303 (377)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETT---CEEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHH
T ss_pred ecCCCCHHHEEEcCCCCEEEEechhheecC---CcccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHHH
Confidence 999999999999999999999999998643 23344567 999999999887 899999999999999
Q ss_pred HHHHhCCCCCcccccccccccccccccccccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 598 LEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 598 ~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
|||++|+.||....... ....+... . . ..+.++.+++.+||+.||++|||+.|+++
T Consensus 304 ~elltg~~Pf~~~~~~~--------~~~~~~~~-~---~----~~~~~~~~li~~~L~~dp~~Rpt~~e~l~ 359 (377)
T 3byv_A 304 YWIWCADLPITKDAALG--------GSEWIFRS-C---K----NIPQPVRALLEGFLRYPKEDRLLPLQAME 359 (377)
T ss_dssp HHHHHSSCCC------C--------CSGGGGSS-C---C----CCCHHHHHHHHHHTCSSGGGCCCHHHHHT
T ss_pred HHHHHCCCCCccccccc--------chhhhhhh-c---c----CCCHHHHHHHHHHcCCCchhCCCHHHHhh
Confidence 99999999987432211 11111111 1 1 11245889999999999999999999985
No 134
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=100.00 E-value=3.7e-42 Score=354.84 Aligned_cols=257 Identities=24% Similarity=0.382 Sum_probs=206.8
Q ss_pred HHhcCCCccceeccCCcEEEEEEEeCC------CCEEEEEeeccchhhhhHHHHHHHHHHHHHhcc-CCCcccceeeeee
Q 005864 399 RATKNFDAEQCIGIGGQASVYRGELPS------GEVVAVKKFHSLLLSEISVQREFLNEIKALTEI-RHRNIVKFYGFCS 471 (673)
Q Consensus 399 ~~~~~~~~~~~ig~G~~g~vy~~~~~~------~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~ 471 (673)
...++|++.+.||+|+||+||+|.... ++.||+|.+.... .....+.+.+|+.++.++ +||||+++++++.
T Consensus 43 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~ 120 (333)
T 2i1m_A 43 FPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTA--HADEKEALMSELKIMSHLGQHENIVNLLGACT 120 (333)
T ss_dssp CCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred CCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhccccc--ChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEe
Confidence 345789999999999999999997642 3479999987643 233467899999999999 8999999999999
Q ss_pred cCCeeeEEEecccCCChHHHHhcCCC-----------CccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEe
Q 005864 472 HPRHSFLVYECLERGSLAEILSNDGS-----------IKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLL 540 (673)
Q Consensus 472 ~~~~~~lv~e~~~~gsL~~~l~~~~~-----------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill 540 (673)
+++..++||||+++|+|.+++..... ...+++..+..++.|++.||+|||+. +|+||||||+||++
T Consensus 121 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~ 197 (333)
T 2i1m_A 121 HGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASK---NCIHRDVAARNVLL 197 (333)
T ss_dssp SSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGCEE
T ss_pred cCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCcccceEEE
Confidence 99999999999999999999975321 23478999999999999999999999 99999999999999
Q ss_pred CCCCceEEecccceeecCCCCCC--ceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccc
Q 005864 541 SSEYEARVSDFGIAKFLKPGSSN--WTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSS 617 (673)
Q Consensus 541 ~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~ 617 (673)
+.++.+||+|||++......... .....+++.|+|||.+.+..++.++||||||+++|||++ |..||........
T Consensus 198 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~-- 275 (333)
T 2i1m_A 198 TNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSK-- 275 (333)
T ss_dssp EGGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSHH--
T ss_pred CCCCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhHH--
Confidence 99999999999999866443322 223456789999999998899999999999999999998 9999874321111
Q ss_pred cccccccccccCCC--CCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 618 SNMNLSLNEILDPR--LPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 618 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
........ ...+. ..+..+.+++.+||+.||.+|||+.|+++.|+
T Consensus 276 ------~~~~~~~~~~~~~~~----~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~ 322 (333)
T 2i1m_A 276 ------FYKLVKDGYQMAQPA----FAPKNIYSIMQACWALEPTHRPTFQQICSFLQ 322 (333)
T ss_dssp ------HHHHHHHTCCCCCCT----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred ------HHHHHhcCCCCCCCC----CCCHHHHHHHHHHhccChhhCcCHHHHHHHHH
Confidence 11111111 11111 12345889999999999999999999999885
No 135
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=100.00 E-value=3.9e-41 Score=353.54 Aligned_cols=248 Identities=23% Similarity=0.362 Sum_probs=198.5
Q ss_pred cCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccC--CCcccceeeeeecCCeeeEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIR--HRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~--h~niv~l~~~~~~~~~~~lv 479 (673)
..|++.+.||+|+||+||+|...+++.||||++..... .....+.+.+|+.++.+++ ||||+++++++..++..++|
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv 134 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEA-DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV 134 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTC-CHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccc-cHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEE
Confidence 45999999999999999999988899999999875432 3345678999999999996 59999999999999999999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCC
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKP 559 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~ 559 (673)
|| +.+++|.+++.... .+++..+..++.||+.||+|||+. +|+||||||+||+++ ++.+||+|||+++.+..
T Consensus 135 ~E-~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~ 206 (390)
T 2zmd_A 135 ME-CGNIDLNSWLKKKK---SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQP 206 (390)
T ss_dssp EE-CCSEEHHHHHHHCS---SCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCCGGGEEES-SSCEEECCCSSSCCC--
T ss_pred Ee-cCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEEE-CCeEEEEecCccccccC
Confidence 99 67889999998753 578889999999999999999999 999999999999996 57999999999987654
Q ss_pred CCC--Cceeccccccccccccccc-----------CCcCcchhHHHHHHHHHHHHhCCCCCccccccccccccccccccc
Q 005864 560 GSS--NWTEFAGTFGYVAPELAYT-----------MKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNE 626 (673)
Q Consensus 560 ~~~--~~~~~~~~~~y~aPE~~~~-----------~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~ 626 (673)
... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||..... .......
T Consensus 207 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~-------~~~~~~~ 279 (390)
T 2zmd_A 207 DTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIIN-------QISKLHA 279 (390)
T ss_dssp -------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCC-------HHHHHHH
T ss_pred CCccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhH-------HHHHHHH
Confidence 332 2244679999999999865 4688999999999999999999999963211 0111222
Q ss_pred ccCCCCC--CCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 627 ILDPRLP--LPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 627 ~~~~~~~--~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
++++... .+... +.++.+++.+||+.||++|||+.|+++
T Consensus 280 ~~~~~~~~~~~~~~----~~~~~~li~~~L~~dP~~Rps~~ell~ 320 (390)
T 2zmd_A 280 IIDPNHEIEFPDIP----EKDLQDVLKCCLKRDPKQRISIPELLA 320 (390)
T ss_dssp HHCTTSCCCCCCCS----CHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HhCccccCCCCccc----hHHHHHHHHHHcccChhhCCCHHHHhh
Confidence 3332222 12111 345889999999999999999999985
No 136
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-41 Score=350.16 Aligned_cols=249 Identities=23% Similarity=0.364 Sum_probs=197.3
Q ss_pred hcCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCC--CcccceeeeeecCCeeeE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRH--RNIVKFYGFCSHPRHSFL 478 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h--~niv~l~~~~~~~~~~~l 478 (673)
.+.|++.+.||+|+||+||+|...+++.||||++..... .....+.+.+|+.++.+++| |||+++++++..++..++
T Consensus 8 ~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~l 86 (343)
T 3dbq_A 8 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEA-DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM 86 (343)
T ss_dssp SCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTC-CHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred cCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeecccc-chHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEE
Confidence 356889999999999999999998999999999875432 33446789999999999986 999999999999999999
Q ss_pred EEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecC
Q 005864 479 VYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLK 558 (673)
Q Consensus 479 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~ 558 (673)
||| +.+|+|.+++...+ .+++.++..++.|++.||+|||+. +|+||||||+||+++ ++.+||+|||+++...
T Consensus 87 v~e-~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~al~~lH~~---~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~ 158 (343)
T 3dbq_A 87 VME-CGNIDLNSWLKKKK---SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQ 158 (343)
T ss_dssp EEC-CCSEEHHHHHHHSC---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEE-TTEEEECCCSSSCCC-
T ss_pred EEe-CCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEE-CCcEEEeecccccccC
Confidence 999 56789999998753 588899999999999999999999 999999999999997 5789999999998765
Q ss_pred CCCC--Cceeccccccccccccccc-----------CCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccc
Q 005864 559 PGSS--NWTEFAGTFGYVAPELAYT-----------MKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLN 625 (673)
Q Consensus 559 ~~~~--~~~~~~~~~~y~aPE~~~~-----------~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~ 625 (673)
.... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||..... ......
T Consensus 159 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~-------~~~~~~ 231 (343)
T 3dbq_A 159 PDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIIN-------QISKLH 231 (343)
T ss_dssp -----------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCS-------HHHHHH
T ss_pred cccccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhh-------HHHHHH
Confidence 4332 2235679999999999865 6789999999999999999999999863211 011112
Q ss_pred cccCCCCC--CCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 626 EILDPRLP--LPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 626 ~~~~~~~~--~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
..+++... .+... +.++.+++.+||+.||.+|||+.|+++
T Consensus 232 ~~~~~~~~~~~~~~~----~~~l~~li~~~L~~dp~~Rpt~~e~l~ 273 (343)
T 3dbq_A 232 AIIDPNHEIEFPDIP----EKDLQDVLKCCLKRDPKQRISIPELLA 273 (343)
T ss_dssp HHHCTTSCCCCCCCS----CHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHhcCCcccCCcccC----CHHHHHHHHHHcCCChhHCCCHHHHHh
Confidence 22222221 11111 235889999999999999999999985
No 137
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=100.00 E-value=6e-42 Score=351.31 Aligned_cols=260 Identities=18% Similarity=0.276 Sum_probs=194.3
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
++|.+.+.||+|+||+||+|... +|+.||+|++...... .....+.+|+.++++++||||+++++++..++..++||
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 79 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEE--GAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVF 79 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC--------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEE
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEeccccc--ccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEe
Confidence 46889999999999999999775 7999999998654221 12234567999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
||+++ +|.+++...+ ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++......
T Consensus 80 e~~~~-~l~~~~~~~~--~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~ 153 (324)
T 3mtl_A 80 EYLDK-DLKQYLDDCG--NIINMHNVKLFLFQLLRGLAYCHRQ---KVLHRDLKPQNLLINERGELKLADFGLARAKSIP 153 (324)
T ss_dssp ECCSE-EHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCCGGGEEECTTCCEEECSSSEEECC---
T ss_pred ccccc-CHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCcCHHHEEECCCCCEEEccCcccccccCC
Confidence 99985 9999988754 4588999999999999999999999 9999999999999999999999999999876544
Q ss_pred CCCceeccccccccccccccc-CCcCcchhHHHHHHHHHHHHhCCCCCccccccccccc-------cccccccccc----
Q 005864 561 SSNWTEFAGTFGYVAPELAYT-MKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSS-------NMNLSLNEIL---- 628 (673)
Q Consensus 561 ~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~-------~~~~~~~~~~---- 628 (673)
........+|+.|+|||.+.+ ..++.++||||+||++|||++|+.||......+.... .....+....
T Consensus 154 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 233 (324)
T 3mtl_A 154 TKTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEE 233 (324)
T ss_dssp ---------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCHH
T ss_pred ccccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHhchhhhcchh
Confidence 444455678999999999876 5689999999999999999999999975332111000 0000000000
Q ss_pred -----CCCCCCCC--cchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 629 -----DPRLPLPS--RNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 629 -----~~~~~~~~--~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.+...... ......+.++.+++.+||+.||++|||++|+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 281 (324)
T 3mtl_A 234 FKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMK 281 (324)
T ss_dssp HHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred hcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhc
Confidence 00000000 001122356889999999999999999999975
No 138
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=100.00 E-value=1.4e-41 Score=368.46 Aligned_cols=253 Identities=25% Similarity=0.387 Sum_probs=211.3
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 479 (673)
.++|++.+.||+|+||+||+|... +|+.||||++...........+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus 25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 104 (484)
T 3nyv_A 25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLV 104 (484)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 357899999999999999999775 7999999998765443344567899999999999999999999999999999999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEe---CCCCceEEecccceee
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLL---SSEYEARVSDFGIAKF 556 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill---~~~~~~kl~Dfg~~~~ 556 (673)
|||+.+|+|.+++...+ .+++..+..++.|++.||+|||++ +|+||||||+||++ +.++.+||+|||++..
T Consensus 105 ~e~~~~~~L~~~~~~~~---~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~ 178 (484)
T 3nyv_A 105 GEVYTGGELFDEIISRK---RFSEVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLESKSKDANIRIIDFGLSTH 178 (484)
T ss_dssp ECCCCSCBHHHHHHTCS---CCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEECCTTHHHH
T ss_pred EecCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEE
Confidence 99999999999998653 488999999999999999999999 99999999999999 5678999999999987
Q ss_pred cCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCC
Q 005864 557 LKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPS 636 (673)
Q Consensus 557 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (673)
..... ......||+.|+|||++.+ .++.++||||+||++|+|++|+.||...... .....+.......+.
T Consensus 179 ~~~~~-~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--------~~~~~i~~~~~~~~~ 248 (484)
T 3nyv_A 179 FEASK-KMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANEY--------DILKKVEKGKYTFEL 248 (484)
T ss_dssp BCCCC-SHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--------HHHHHHHHCCCCCCS
T ss_pred ccccc-ccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCHH--------HHHHHHHcCCCCCCC
Confidence 65432 3345679999999999866 6899999999999999999999999743321 112222233333333
Q ss_pred cchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 637 RNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 637 ~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
..+...+.++.+++.+||+.||++|||+.|+++
T Consensus 249 ~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~ 281 (484)
T 3nyv_A 249 PQWKKVSESAKDLIRKMLTYVPSMRISARDALD 281 (484)
T ss_dssp GGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred cccccCCHHHHHHHHHHCCCChhHCcCHHHHhh
Confidence 344455667999999999999999999999985
No 139
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.1e-40 Score=336.19 Aligned_cols=251 Identities=25% Similarity=0.353 Sum_probs=203.6
Q ss_pred cCCCccc-eeccCCcEEEEEEEeC---CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeee
Q 005864 402 KNFDAEQ-CIGIGGQASVYRGELP---SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSF 477 (673)
Q Consensus 402 ~~~~~~~-~ig~G~~g~vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 477 (673)
++|.+.+ .||+|+||+||+|.+. +++.||||+++... .....+.+.+|++++.+++||||+++++++ ..+..+
T Consensus 9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~ 85 (287)
T 1u59_A 9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT--EKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALM 85 (287)
T ss_dssp GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSC--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEE
T ss_pred HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCcc--chhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcE
Confidence 3455555 8999999999999753 57889999997642 334567899999999999999999999999 456689
Q ss_pred EEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeec
Q 005864 478 LVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFL 557 (673)
Q Consensus 478 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~ 557 (673)
+||||+++++|.+++.... ..+++..+..++.|+++||+|||+. +++||||||+||+++.++.+||+|||++...
T Consensus 86 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~ 160 (287)
T 1u59_A 86 LVMEMAGGGPLHKFLVGKR--EEIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDFGLSKAL 160 (287)
T ss_dssp EEEECCTTEEHHHHHTTCT--TTSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCCTTCEEC
T ss_pred EEEEeCCCCCHHHHHHhCC--ccCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCchheEEEcCCCCEEECcccceeee
Confidence 9999999999999997543 4589999999999999999999999 9999999999999999999999999999887
Q ss_pred CCCCCC---ceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccccccccccccCC-CC
Q 005864 558 KPGSSN---WTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLSLNEILDP-RL 632 (673)
Q Consensus 558 ~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~ 632 (673)
...... .....+++.|+|||.+.+..++.++||||||+++|||++ |+.||......+. ...+... ..
T Consensus 161 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~--------~~~i~~~~~~ 232 (287)
T 1u59_A 161 GADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEV--------MAFIEQGKRM 232 (287)
T ss_dssp TTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHH--------HHHHHTTCCC
T ss_pred ccCcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHH--------HHHHhcCCcC
Confidence 543322 123346789999999988889999999999999999998 9999874322111 1111111 11
Q ss_pred CCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 633 PLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 633 ~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
..+. ..+.++.+++.+||+.||++||++.|+++.|+
T Consensus 233 ~~~~----~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~ 268 (287)
T 1u59_A 233 ECPP----ECPPELYALMSDCWIYKWEDRPDFLTVEQRMR 268 (287)
T ss_dssp CCCT----TCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHH
T ss_pred CCCC----CcCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 1221 23446899999999999999999999999885
No 140
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=100.00 E-value=6.5e-41 Score=335.82 Aligned_cols=249 Identities=25% Similarity=0.423 Sum_probs=198.2
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
++|.+.+.||+|+||.||+|... +|+.||||.+...........+.+.+|+.+++.++||||+++++++..++..++||
T Consensus 11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 90 (276)
T 2h6d_A 11 GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVM 90 (276)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred ccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEEE
Confidence 57889999999999999999875 79999999987654444445678999999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
||+++++|.+++...+ .+++..+..++.|++.||+|||+. +++||||||+||+++.++.+||+|||++......
T Consensus 91 e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~ 164 (276)
T 2h6d_A 91 EYVSGGELFDYICKHG---RVEEMEARRLFQQILSAVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG 164 (276)
T ss_dssp ECCCSCBHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHH---CSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC-
T ss_pred eccCCCcHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChhhEEECCCCCEEEeecccccccCCC
Confidence 9999999999997653 478899999999999999999999 9999999999999999999999999999876433
Q ss_pred CCCceecccccccccccccccCCc-CcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcch
Q 005864 561 SSNWTEFAGTFGYVAPELAYTMKV-TEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRNI 639 (673)
Q Consensus 561 ~~~~~~~~~~~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (673)
. ......+++.|+|||.+.+..+ +.++||||+|+++|||++|+.||+...... ....+.......+..
T Consensus 165 ~-~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~--------~~~~~~~~~~~~~~~-- 233 (276)
T 2h6d_A 165 E-FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPT--------LFKKIRGGVFYIPEY-- 233 (276)
T ss_dssp -------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSHHH--------HHHHHHHCCCCCCTT--
T ss_pred c-ceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcHHH--------HHHHhhcCcccCchh--
Confidence 2 2234568999999999987765 689999999999999999999987432211 111111111122211
Q ss_pred HHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 640 QDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 640 ~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.+..+.+++.+||+.||++|||++|+++
T Consensus 234 --~~~~l~~li~~~l~~~p~~Rps~~~~l~ 261 (276)
T 2h6d_A 234 --LNRSVATLLMHMLQVDPLKRATIKDIRE 261 (276)
T ss_dssp --SCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred --cCHHHHHHHHHHccCChhhCCCHHHHHh
Confidence 2345889999999999999999999986
No 141
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=100.00 E-value=7.5e-41 Score=342.31 Aligned_cols=258 Identities=24% Similarity=0.341 Sum_probs=204.1
Q ss_pred CCccceeccCCcEEEEEEEeC-----CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeec--CCee
Q 005864 404 FDAEQCIGIGGQASVYRGELP-----SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSH--PRHS 476 (673)
Q Consensus 404 ~~~~~~ig~G~~g~vy~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~ 476 (673)
|++.+.||+|+||+||++.+. +|+.||||+++.. ......+.+.+|++++++++||||+++++++.+ ....
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 110 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKAD--AGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASL 110 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTT--CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEE
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccc--cChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceE
Confidence 488999999999999988642 6889999999764 223456789999999999999999999999987 4578
Q ss_pred eEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceee
Q 005864 477 FLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKF 556 (673)
Q Consensus 477 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~ 556 (673)
++||||+++|+|.+++.... +++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++..
T Consensus 111 ~lv~e~~~~~~L~~~l~~~~----~~~~~~~~i~~~l~~~l~~LH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~ 183 (318)
T 3lxp_A 111 QLVMEYVPLGSLRDYLPRHS----IGLAQLLLFAQQICEGMAYLHAQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAKA 183 (318)
T ss_dssp EEEECCCTTCBHHHHGGGSC----CCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEE
T ss_pred EEEEecccCCcHHHHHhhCC----CCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEEcCCCCEEECCcccccc
Confidence 99999999999999997653 88999999999999999999999 999999999999999999999999999998
Q ss_pred cCCCCCC---ceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccc----c--ccccccccccc
Q 005864 557 LKPGSSN---WTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSS----S--SSNMNLSLNEI 627 (673)
Q Consensus 557 ~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~----~--~~~~~~~~~~~ 627 (673)
....... .....++..|+|||.+.+..++.++||||+|+++|||++|+.||........ . .........+.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (318)
T 3lxp_A 184 VPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTEL 263 (318)
T ss_dssp CCTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred ccccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHH
Confidence 7654322 2334578889999999998999999999999999999999999864321100 0 00000011111
Q ss_pred cCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 628 LDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
+......+ .....+.++.+++.+||+.||++|||++|+++.|+
T Consensus 264 ~~~~~~~~--~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~ 306 (318)
T 3lxp_A 264 LERGERLP--RPDKCPAEVYHLMKNCWETEASFRPTFENLIPILK 306 (318)
T ss_dssp HHTTCCCC--CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred HhcccCCC--CCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHH
Confidence 11111111 11123346899999999999999999999999886
No 142
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=100.00 E-value=1.5e-41 Score=348.59 Aligned_cols=262 Identities=21% Similarity=0.344 Sum_probs=209.8
Q ss_pred HHHHHhcCCCccceeccCCcEEEEEEEeC------CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeee
Q 005864 396 EIIRATKNFDAEQCIGIGGQASVYRGELP------SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGF 469 (673)
Q Consensus 396 ~~~~~~~~~~~~~~ig~G~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~ 469 (673)
++....++|++.+.||+|+||.||+|.+. +++.||+|.+.... .......+.+|+.+++.++||||++++++
T Consensus 19 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~ 96 (322)
T 1p4o_A 19 EWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAA--SMRERIEFLNEASVMKEFNCHHVVRLLGV 96 (322)
T ss_dssp TTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTS--CHHHHHHHHHHHHHGGGCCCTTBCCEEEE
T ss_pred hhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEeccccc--CHHHHHHHHHHHHHHHhcCCCCEeeeEEE
Confidence 34445678999999999999999999654 47889999987542 23345678999999999999999999999
Q ss_pred eecCCeeeEEEecccCCChHHHHhcCC-------CCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCC
Q 005864 470 CSHPRHSFLVYECLERGSLAEILSNDG-------SIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSS 542 (673)
Q Consensus 470 ~~~~~~~~lv~e~~~~gsL~~~l~~~~-------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~ 542 (673)
+.+++..++||||+++|+|.+++...+ ....+++..+..++.|++.||+|||++ +|+||||||+||+++.
T Consensus 97 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~NIli~~ 173 (322)
T 1p4o_A 97 VSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAE 173 (322)
T ss_dssp ECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSGGGEEECT
T ss_pred EccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CCccCCCccceEEEcC
Confidence 999999999999999999999997532 123468899999999999999999999 9999999999999999
Q ss_pred CCceEEecccceeecCCCCCC--ceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccc
Q 005864 543 EYEARVSDFGIAKFLKPGSSN--WTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSN 619 (673)
Q Consensus 543 ~~~~kl~Dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~ 619 (673)
++.+||+|||++......... .....+++.|+|||.+.+..++.++||||+|+++|||++ |+.||......+
T Consensus 174 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~----- 248 (322)
T 1p4o_A 174 DFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQ----- 248 (322)
T ss_dssp TCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHH-----
T ss_pred CCeEEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCHHH-----
Confidence 999999999999865432211 123456789999999998899999999999999999999 899987432211
Q ss_pred cccccccccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhhC
Q 005864 620 MNLSLNEILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLCK 673 (673)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~~ 673 (673)
....+......... ...+..+.+++.+||+.||++|||+.|+++.|++
T Consensus 249 ---~~~~~~~~~~~~~~---~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~ 296 (322)
T 1p4o_A 249 ---VLRFVMEGGLLDKP---DNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKE 296 (322)
T ss_dssp ---HHHHHHTTCCCCCC---TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGG
T ss_pred ---HHHHHHcCCcCCCC---CCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHH
Confidence 11111111111111 1223458899999999999999999999999863
No 143
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=100.00 E-value=1.7e-41 Score=342.60 Aligned_cols=247 Identities=21% Similarity=0.386 Sum_probs=198.8
Q ss_pred cCCCccceeccCCcEEEEEEEeCC-C-------CEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecC
Q 005864 402 KNFDAEQCIGIGGQASVYRGELPS-G-------EVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHP 473 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~~-~-------~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~ 473 (673)
++|.+.+.||+|+||+||+|.... + +.||+|.+.... ....+.+.+|+.++++++||||+++++++.++
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~ 84 (289)
T 4fvq_A 8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAH---RNYSESFFEAASMMSKLSHKHLVLNYGVCVCG 84 (289)
T ss_dssp GGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGG---GGGHHHHHHHHHHHHTSCCTTBCCEEEEECCT
T ss_pred hHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhccccc---HHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeC
Confidence 578889999999999999996643 3 479999986532 23467899999999999999999999999999
Q ss_pred CeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCc--------
Q 005864 474 RHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYE-------- 545 (673)
Q Consensus 474 ~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~-------- 545 (673)
+..++||||+++|+|.+++...+ ..+++..+..++.|++.||+|||++ +|+||||||+||+++.++.
T Consensus 85 ~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~ 159 (289)
T 4fvq_A 85 DENILVQEFVKFGSLDTYLKKNK--NCINILWKLEVAKQLAAAMHFLEEN---TLIHGNVCAKNILLIREEDRKTGNPPF 159 (289)
T ss_dssp TCCEEEEECCTTCBHHHHHHHTG--GGCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEEECCBGGGTBCCE
T ss_pred CCCEEEEECCCCCCHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHhhC---CeECCCcCcceEEEecCCcccccccce
Confidence 99999999999999999998753 4488999999999999999999999 9999999999999998887
Q ss_pred eEEecccceeecCCCCCCceeccccccccccccccc-CCcCcchhHHHHHHHHHHHHhCCCC-Ccccccccccccccccc
Q 005864 546 ARVSDFGIAKFLKPGSSNWTEFAGTFGYVAPELAYT-MKVTEKCDVYSFGVLALEVIKGKHP-RDFISLLSSSSSNMNLS 623 (673)
Q Consensus 546 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~~g~~p-~~~~~~~~~~~~~~~~~ 623 (673)
+||+|||++..... .....+++.|+|||.+.+ ..++.++||||||+++|||++|..| |........
T Consensus 160 ~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~-------- 227 (289)
T 4fvq_A 160 IKLSDPGISITVLP----KDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRK-------- 227 (289)
T ss_dssp EEECCCCSCTTTSC----HHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHH--------
T ss_pred eeeccCcccccccC----ccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHHH--------
Confidence 99999999864422 234567899999999987 6789999999999999999996554 432211100
Q ss_pred cccccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhhC
Q 005864 624 LNEILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLCK 673 (673)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~~ 673 (673)
..........+... +.++.+++.+||+.||++|||++|+++.|++
T Consensus 228 -~~~~~~~~~~~~~~----~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~ 272 (289)
T 4fvq_A 228 -LQFYEDRHQLPAPK----AAELANLINNCMDYEPDHRPSFRAIIRDLNS 272 (289)
T ss_dssp -HHHHHTTCCCCCCS----SCTTHHHHHHHSCSSGGGSCCHHHHHHHHHT
T ss_pred -HHHhhccCCCCCCC----CHHHHHHHHHHcCCChhHCcCHHHHHHHHHH
Confidence 00011111111111 2247899999999999999999999999874
No 144
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=100.00 E-value=1.6e-41 Score=348.39 Aligned_cols=252 Identities=25% Similarity=0.371 Sum_probs=198.1
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCE----EEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCee
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEV----VAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHS 476 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~----vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 476 (673)
++|++.+.||+|+||+||+|.+. +|+. ||+|.+.... .....+.+.+|+.++.+++||||+++++++. ++..
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~ 89 (325)
T 3kex_A 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKS--GRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSL 89 (325)
T ss_dssp TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTT--SCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSE
T ss_pred hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccc--cHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCcc
Confidence 46888999999999999999764 4554 7788765432 1222456778999999999999999999986 4568
Q ss_pred eEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceee
Q 005864 477 FLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKF 556 (673)
Q Consensus 477 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~ 556 (673)
++|+||+++|+|.+++...+ ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.
T Consensus 90 ~~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~ 164 (325)
T 3kex_A 90 QLVTQYLPLGSLLDHVRQHR--GALGPQLLLNWGVQIAKGMYYLEEH---GMVHRNLAARNVLLKSPSQVQVADFGVADL 164 (325)
T ss_dssp EEEEECCTTCBSHHHHHSSG--GGSCTTHHHHHHHHHHHHHHHHHHT---TCCCSCCSSTTEEESSSSCEEECSCSGGGG
T ss_pred EEEEEeCCCCCHHHHHHHcc--ccCCHHHHHHHHHHHHHHHHHHHhC---CCCCCccchheEEECCCCeEEECCCCcccc
Confidence 89999999999999998653 4688899999999999999999999 999999999999999999999999999987
Q ss_pred cCCCCC--CceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccccccccccccCCCCC
Q 005864 557 LKPGSS--NWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLSLNEILDPRLP 633 (673)
Q Consensus 557 ~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (673)
...... ......++..|+|||++.+..++.++||||||+++|||++ |+.||......+.. ..... .....
T Consensus 165 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~-----~~~~~--~~~~~ 237 (325)
T 3kex_A 165 LPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVP-----DLLEK--GERLA 237 (325)
T ss_dssp SCCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHHH-----HHHHT--TCBCC
T ss_pred cCcccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHHH-----HHHHc--CCCCC
Confidence 654332 2344567889999999999999999999999999999999 99999743221110 00000 00111
Q ss_pred CCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 634 LPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 634 ~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
.+.. .+.++.+++.+||+.||++|||++|+++.|+
T Consensus 238 ~~~~----~~~~~~~li~~~l~~dp~~Rps~~el~~~l~ 272 (325)
T 3kex_A 238 QPQI----CTIDVYMVMVKCWMIDENIRPTFKELANEFT 272 (325)
T ss_dssp CCTT----BCTTTTHHHHHHTCSCTTTSCCHHHHHHHHH
T ss_pred CCCc----CcHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 1111 2224778999999999999999999999885
No 145
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=100.00 E-value=4.4e-41 Score=344.13 Aligned_cols=259 Identities=20% Similarity=0.343 Sum_probs=199.1
Q ss_pred cCCCcc-ceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhcc-CCCcccceeeeeecCCeeeE
Q 005864 402 KNFDAE-QCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEI-RHRNIVKFYGFCSHPRHSFL 478 (673)
Q Consensus 402 ~~~~~~-~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~l 478 (673)
+.|++. +.||+|+||+||+|... +|+.||||++.... ....+.+.+|++++.++ +||||+++++++.+++..++
T Consensus 12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~l 88 (316)
T 2ac3_A 12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQP---GHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYL 88 (316)
T ss_dssp TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCS---SCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCc---chhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEE
Confidence 467774 78999999999999764 79999999986542 22356788999999985 79999999999999999999
Q ss_pred EEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCc---eEEeccccee
Q 005864 479 VYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYE---ARVSDFGIAK 555 (673)
Q Consensus 479 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~---~kl~Dfg~~~ 555 (673)
||||+++|+|.+++... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++. +||+|||++.
T Consensus 89 v~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~ 162 (316)
T 2ac3_A 89 VFEKMRGGSILSHIHKR---RHFNELEASVVVQDVASALDFLHNK---GIAHRDLKPENILCEHPNQVSPVKICDFDLGS 162 (316)
T ss_dssp EEECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESCSSSSCSEEECCTTCCC
T ss_pred EEEcCCCCcHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEEccCCCcCceEEEEccCcc
Confidence 99999999999999865 3488899999999999999999999 9999999999999998776 9999999997
Q ss_pred ecCCCCC-------Cceeccccccccccccccc-----CCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccc----
Q 005864 556 FLKPGSS-------NWTEFAGTFGYVAPELAYT-----MKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSN---- 619 (673)
Q Consensus 556 ~~~~~~~-------~~~~~~~~~~y~aPE~~~~-----~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~---- 619 (673)
....... ......||+.|+|||.+.+ ..++.++||||+||++|||++|+.||......+.....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~ 242 (316)
T 2ac3_A 163 GIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEAC 242 (316)
T ss_dssp -------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CC
T ss_pred ccccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccc
Confidence 6542211 1223458999999999875 56889999999999999999999999753321110000
Q ss_pred ---cccccccccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 620 ---MNLSLNEILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 620 ---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.......+.......+...+...+.++.+++.+||+.||++|||++|+++
T Consensus 243 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 295 (316)
T 2ac3_A 243 PACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQ 295 (316)
T ss_dssp HHHHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred hhHHHHHHHHHhccCcccCchhcccCCHHHHHHHHHHhhCChhhCCCHHHHhc
Confidence 00111222223333322222234557899999999999999999999986
No 146
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=100.00 E-value=7.9e-41 Score=373.79 Aligned_cols=251 Identities=20% Similarity=0.259 Sum_probs=213.1
Q ss_pred HhcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhcc-CCCcccceeeeeecCCeee
Q 005864 400 ATKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEI-RHRNIVKFYGFCSHPRHSF 477 (673)
Q Consensus 400 ~~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~ 477 (673)
..++|++.+.||+|+||+||+|+.. +++.||||+++..........+.+..|..++..+ +||+|+++++++.+.+..+
T Consensus 339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~ 418 (674)
T 3pfq_A 339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 418 (674)
T ss_dssp -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence 3467999999999999999999765 6889999999865444444567788999999988 7999999999999999999
Q ss_pred EEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeec
Q 005864 478 LVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFL 557 (673)
Q Consensus 478 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~ 557 (673)
+||||+++|+|.+++...+ .+++..+..++.||+.||+|||+. +|+||||||+|||++.++.+||+|||+++..
T Consensus 419 lV~E~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---gIiHrDLKp~NILl~~~g~ikL~DFGla~~~ 492 (674)
T 3pfq_A 419 FVMEYVNGGDLMYHIQQVG---RFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKEN 492 (674)
T ss_dssp EEEECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---SEECCCCCSTTEEECSSSCEEECCCTTCEEC
T ss_pred EEEeCcCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeEeccCChhhEEEcCCCcEEEeecceeecc
Confidence 9999999999999998753 488999999999999999999999 9999999999999999999999999999875
Q ss_pred CCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCc
Q 005864 558 KPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSR 637 (673)
Q Consensus 558 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (673)
...........||+.|+|||++.+..++.++|||||||++|||++|+.||..... ......++......+..
T Consensus 493 ~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~--------~~~~~~i~~~~~~~p~~ 564 (674)
T 3pfq_A 493 IWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE--------DELFQSIMEHNVAYPKS 564 (674)
T ss_dssp CCTTCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH--------HHHHHHHHSSCCCCCTT
T ss_pred ccCCcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCH--------HHHHHHHHhCCCCCCcc
Confidence 5444455667899999999999999999999999999999999999999974322 22334444445444432
Q ss_pred chHHHHHHHHHHHHHcccCCCCCCCCH-----HHHH
Q 005864 638 NIQDKLISILEVALLCLEESPESRPTM-----QTVC 668 (673)
Q Consensus 638 ~~~~~~~~l~~li~~cl~~dp~~Rps~-----~~v~ 668 (673)
.+.++.+++.+||+.||++||++ +|++
T Consensus 565 ----~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~ 596 (674)
T 3pfq_A 565 ----MSKEAVAICKGLMTKHPGKRLGCGPEGERDIK 596 (674)
T ss_dssp ----SCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHH
T ss_pred ----CCHHHHHHHHHHccCCHHHCCCCCCCcHHHHh
Confidence 33458899999999999999997 6665
No 147
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=100.00 E-value=5.8e-41 Score=344.76 Aligned_cols=261 Identities=25% Similarity=0.310 Sum_probs=206.5
Q ss_pred cCCCccceeccCCcEEEEEEEe-----CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeee--cCC
Q 005864 402 KNFDAEQCIGIGGQASVYRGEL-----PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCS--HPR 474 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~--~~~ 474 (673)
++|++.+.||+|+||.||+|++ .+++.||||++.... ....+.+.+|++++++++||||+++++++. ...
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~ 99 (327)
T 3lxl_A 23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSG---PDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQ 99 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCC---HHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSC
T ss_pred hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCC---HHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCc
Confidence 5788999999999999999983 468899999987542 334677999999999999999999999986 456
Q ss_pred eeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccce
Q 005864 475 HSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIA 554 (673)
Q Consensus 475 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~ 554 (673)
..++||||+++|+|.+++.... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 100 ~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~ 174 (327)
T 3lxl_A 100 SLRLVMEYLPSGCLRDFLQRHR--ARLDASRLLLYSSQICKGMEYLGSR---RCVHRDLAARNILVESEAHVKIADFGLA 174 (327)
T ss_dssp EEEEEEECCTTCBHHHHHHHHG--GGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCGGGC
T ss_pred eEEEEEeecCCCCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChhhEEECCCCCEEEcccccc
Confidence 6899999999999999998643 3589999999999999999999999 9999999999999999999999999999
Q ss_pred eecCCCCCC---ceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccc------cccccccc
Q 005864 555 KFLKPGSSN---WTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSS------SNMNLSLN 625 (673)
Q Consensus 555 ~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~------~~~~~~~~ 625 (673)
......... .....+++.|+|||.+.+..++.++||||||+++|||++|+.||.......... ........
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (327)
T 3lxl_A 175 KLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLL 254 (327)
T ss_dssp EECCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHH
T ss_pred eecccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHH
Confidence 987544322 223457888999999999899999999999999999999999986432210000 00000011
Q ss_pred cccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 626 EILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
+.+......+ .....+..+.+++.+||+.||++|||++|+++.|+
T Consensus 255 ~~~~~~~~~~--~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~ 299 (327)
T 3lxl_A 255 ELLEEGQRLP--APPACPAEVHELMKLCWAPSPQDRPSFSALGPQLD 299 (327)
T ss_dssp HHHHTTCCCC--CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred HHhhcccCCC--CCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 1111111111 11223446899999999999999999999999886
No 148
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=100.00 E-value=3.2e-41 Score=357.73 Aligned_cols=255 Identities=22% Similarity=0.294 Sum_probs=195.3
Q ss_pred HhcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhh-----hhHHHHHHHHHHHHHhccCCCcccceeeeeecC
Q 005864 400 ATKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLS-----EISVQREFLNEIKALTEIRHRNIVKFYGFCSHP 473 (673)
Q Consensus 400 ~~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~-----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~ 473 (673)
..++|.+.+.||+|+||+||+|... +++.||||++...... .......+.+|+.++++++||||+++++++..
T Consensus 133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~- 211 (419)
T 3i6u_A 133 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA- 211 (419)
T ss_dssp HHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES-
T ss_pred hhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec-
Confidence 4578999999999999999999764 6899999998764322 11223458899999999999999999999854
Q ss_pred CeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCC---ceEEec
Q 005864 474 RHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEY---EARVSD 550 (673)
Q Consensus 474 ~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~---~~kl~D 550 (673)
+..++||||+++|+|.+++... ..+++..+..++.|++.||+|||++ +|+||||||+||+++.++ .+||+|
T Consensus 212 ~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~~~~kl~D 285 (419)
T 3i6u_A 212 EDYYIVLELMEGGELFDKVVGN---KRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKITD 285 (419)
T ss_dssp SEEEEEEECCTTCBGGGGTSSS---CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSSSCCEEECC
T ss_pred CceEEEEEcCCCCcHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCCCcceEEEee
Confidence 4578999999999999998765 3589999999999999999999999 999999999999997544 599999
Q ss_pred ccceeecCCCCCCceeccccccccccccccc---CCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccc
Q 005864 551 FGIAKFLKPGSSNWTEFAGTFGYVAPELAYT---MKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEI 627 (673)
Q Consensus 551 fg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~---~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~ 627 (673)
||+++..... .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||...... ......+
T Consensus 286 FG~a~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~-------~~~~~~i 357 (419)
T 3i6u_A 286 FGHSKILGET-SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQ-------VSLKDQI 357 (419)
T ss_dssp SSTTTSCC------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSS-------CCHHHHH
T ss_pred cccceecCCC-ccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcch-------HHHHHHH
Confidence 9999876432 23345679999999999853 56788999999999999999999999742211 1111122
Q ss_pred cCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 628 LDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
...........+...+..+.+++.+||+.||++|||++|+++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 399 (419)
T 3i6u_A 358 TSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALR 399 (419)
T ss_dssp HTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred hcCCCCCCchhhcccCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence 222333222222334567999999999999999999999986
No 149
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=9.5e-41 Score=348.14 Aligned_cols=260 Identities=22% Similarity=0.244 Sum_probs=202.7
Q ss_pred HHHhcCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccC-----CCcccceeeeee
Q 005864 398 IRATKNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIR-----HRNIVKFYGFCS 471 (673)
Q Consensus 398 ~~~~~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~-----h~niv~l~~~~~ 471 (673)
....++|++.+.||+|+||+||+|+. .+++.||||++... ....+.+..|+.++..++ ||||+++++++.
T Consensus 31 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~ 106 (360)
T 3llt_A 31 MLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI----KKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFM 106 (360)
T ss_dssp CEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC----HHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEE
T ss_pred eEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc----hhhhhhhHHHHHHHHHhcccCCCCCCeecccceee
Confidence 33457899999999999999999977 46899999998643 223566778999999986 999999999999
Q ss_pred cCCeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCC---------
Q 005864 472 HPRHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSS--------- 542 (673)
Q Consensus 472 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~--------- 542 (673)
..+..++||||+ +++|.+++..... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.
T Consensus 107 ~~~~~~lv~e~~-~~~L~~~~~~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~~~~~ 181 (360)
T 3llt_A 107 YYDHMCLIFEPL-GPSLYEIITRNNY-NGFHIEDIKLYCIEILKALNYLRKM---SLTHTDLKPENILLDDPYFEKSLIT 181 (360)
T ss_dssp ETTEEEEEECCC-CCBHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCTTCCEEEEE
T ss_pred ECCeeEEEEcCC-CCCHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCcccEEEccccccccccc
Confidence 999999999999 8899999987542 3588999999999999999999999 9999999999999975
Q ss_pred ----------------CCceEEecccceeecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCC
Q 005864 543 ----------------EYEARVSDFGIAKFLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHP 606 (673)
Q Consensus 543 ----------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p 606 (673)
++.+||+|||++...... .....||+.|+|||++.+..++.++||||+||++|||++|+.|
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~p 258 (360)
T 3llt_A 182 VRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDY---HGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLL 258 (360)
T ss_dssp EECTTTCCEEEEEEESCCCEEECCCTTCEETTSC---CCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCS
T ss_pred hhcccccccccccccCCCCEEEEeccCceecCCC---CcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCC
Confidence 788999999999875432 2346789999999999999999999999999999999999999
Q ss_pred Cccccccccccc-------ccc--------ccccccc-----CCCCCCCCcchH--------------HHHHHHHHHHHH
Q 005864 607 RDFISLLSSSSS-------NMN--------LSLNEIL-----DPRLPLPSRNIQ--------------DKLISILEVALL 652 (673)
Q Consensus 607 ~~~~~~~~~~~~-------~~~--------~~~~~~~-----~~~~~~~~~~~~--------------~~~~~l~~li~~ 652 (673)
|......+.... ... ....... ....+....... .....+.+++.+
T Consensus 259 f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ 338 (360)
T 3llt_A 259 FRTHEHMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHELFCDFLYS 338 (360)
T ss_dssp CCCSSHHHHHHHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHHHCCCHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHhcCCCCHHHHhhhhhccCccccCcccceecCcccccchhhhhhhhhcccccccchHHHHHHHHHH
Confidence 964322110000 000 0000000 000010000000 011457899999
Q ss_pred cccCCCCCCCCHHHHHH
Q 005864 653 CLEESPESRPTMQTVCQ 669 (673)
Q Consensus 653 cl~~dp~~Rps~~~v~~ 669 (673)
||+.||++|||++|+++
T Consensus 339 ~L~~dP~~Rpta~elL~ 355 (360)
T 3llt_A 339 ILQIDPTLRPSPAELLK 355 (360)
T ss_dssp HCCSSGGGSCCHHHHTT
T ss_pred HhcCChhhCCCHHHHhc
Confidence 99999999999999975
No 150
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=100.00 E-value=5.7e-41 Score=363.53 Aligned_cols=252 Identities=23% Similarity=0.335 Sum_probs=207.0
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 479 (673)
.++|++.+.||+|+||+||+|... +|+.||||++....... .....+.+|++++++++||||+++++++.+.+..++|
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 99 (486)
T 3mwu_A 21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKN-KDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV 99 (486)
T ss_dssp HHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBC-SCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccc-hHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEE
Confidence 457999999999999999999775 79999999987543222 2357789999999999999999999999999999999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeC---CCCceEEecccceee
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLS---SEYEARVSDFGIAKF 556 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~---~~~~~kl~Dfg~~~~ 556 (673)
|||+++|+|.+.+...+ .+++..+..++.|++.||+|||+. +|+||||||+||+++ .++.+||+|||++..
T Consensus 100 ~e~~~~~~L~~~~~~~~---~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~ 173 (486)
T 3mwu_A 100 GELYTGGELFDEIIKRK---RFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLSTC 173 (486)
T ss_dssp ECCCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEESSSSTTCCEEECSCSCTTT
T ss_pred EEcCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEEECCcCeE
Confidence 99999999999987653 488999999999999999999999 999999999999995 456799999999986
Q ss_pred cCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCC
Q 005864 557 LKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPS 636 (673)
Q Consensus 557 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (673)
.... .......||+.|+|||++.+ .++.++||||+||++|+|++|+.||...... .....+.......+.
T Consensus 174 ~~~~-~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--------~~~~~i~~~~~~~~~ 243 (486)
T 3mwu_A 174 FQQN-TKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEY--------DILKRVETGKYAFDL 243 (486)
T ss_dssp BCCC-----CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH--------HHHHHHHHTCCCSCS
T ss_pred CCCC-CccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--------HHHHHHHhCCCCCCC
Confidence 6443 23345679999999999875 5899999999999999999999999743221 112222333333333
Q ss_pred cchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 637 RNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 637 ~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
..+...+.++.+++.+||+.||++|||+.|+++
T Consensus 244 ~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~ 276 (486)
T 3mwu_A 244 PQWRTISDDAKDLIRKMLTFHPSLRITATQCLE 276 (486)
T ss_dssp GGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred cccCCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 344455667899999999999999999999986
No 151
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=100.00 E-value=4.6e-41 Score=337.47 Aligned_cols=251 Identities=22% Similarity=0.416 Sum_probs=204.2
Q ss_pred hcCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
.++|++.+.||+|+||+||+|...+++.||+|.+..... ..+.+.+|++++++++||||+++++++.. +..++||
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~v~ 86 (279)
T 1qpc_A 12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM----SPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIIT 86 (279)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS----CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEE
T ss_pred HHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcc----cHHHHHHHHHHHHhCCCcCcceEEEEEcC-CCcEEEE
Confidence 467889999999999999999988888999999865422 25678899999999999999999999864 5689999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
||+++++|.+++.... ...+++..+..++.|++.||+|||+. +++||||||+||++++++.+||+|||++......
T Consensus 87 e~~~~~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~ 162 (279)
T 1qpc_A 87 EYMENGSLVDFLKTPS-GIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDN 162 (279)
T ss_dssp ECCTTCBHHHHTTSHH-HHTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECSSS
T ss_pred ecCCCCCHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHhhEEEcCCCCEEECCCcccccccCc
Confidence 9999999999997542 12588999999999999999999999 9999999999999999999999999999877543
Q ss_pred CCC-ceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccccccccccccCC-CCCCCCc
Q 005864 561 SSN-WTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLSLNEILDP-RLPLPSR 637 (673)
Q Consensus 561 ~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 637 (673)
... .....++..|+|||.+.+..++.++||||||+++|||++ |+.||......+. ...+... ....+.
T Consensus 163 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~--------~~~~~~~~~~~~~~- 233 (279)
T 1qpc_A 163 EYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEV--------IQNLERGYRMVRPD- 233 (279)
T ss_dssp CEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHH--------HHHHHTTCCCCCCT-
T ss_pred ccccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHHHH--------HHHHhcccCCCCcc-
Confidence 221 123446778999999988889999999999999999999 9999874322111 1111111 111111
Q ss_pred chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 638 NIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 638 ~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
..+.++.+++.+||+.||++|||++++++.|+
T Consensus 234 ---~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~ 265 (279)
T 1qpc_A 234 ---NCPEELYQLMRLCWKERPEDRPTFDYLRSVLE 265 (279)
T ss_dssp ---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred ---cccHHHHHHHHHHhccChhhCCCHHHHHHHHH
Confidence 22346889999999999999999999999886
No 152
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=100.00 E-value=4.4e-41 Score=341.98 Aligned_cols=250 Identities=26% Similarity=0.354 Sum_probs=203.1
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 479 (673)
.++|.+.+.||+|+||+||+|+.. +|+.||+|.+..... ...+.+.+|+.++.+++||||+++++++.+.+..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 84 (304)
T 2jam_A 8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPA---FRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLV 84 (304)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC---------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccc---cchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEE
Confidence 457899999999999999999775 799999999875422 2245688999999999999999999999999999999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEe---CCCCceEEecccceee
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLL---SSEYEARVSDFGIAKF 556 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill---~~~~~~kl~Dfg~~~~ 556 (673)
|||+++++|.+++...+ .+++..+..++.|++.||+|||+. +++||||||+||++ +.++.+||+|||++..
T Consensus 85 ~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~ 158 (304)
T 2jam_A 85 MQLVSGGELFDRILERG---VYTEKDASLVIQQVLSAVKYLHEN---GIVHRDLKPENLLYLTPEENSKIMITDFGLSKM 158 (304)
T ss_dssp ECCCCSCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCC
T ss_pred EEcCCCccHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEecCCCCCCEEEccCCccee
Confidence 99999999999997653 478899999999999999999999 99999999999999 7788999999999975
Q ss_pred cCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCC
Q 005864 557 LKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPS 636 (673)
Q Consensus 557 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (673)
.... ......|++.|+|||.+.+..++.++||||+|+++|||++|+.||...... .....+.......+.
T Consensus 159 ~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--------~~~~~i~~~~~~~~~ 228 (304)
T 2jam_A 159 EQNG--IMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETES--------KLFEKIKEGYYEFES 228 (304)
T ss_dssp CCCB--TTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHH--------HHHHHHHHCCCCCCT
T ss_pred cCCC--ccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHH--------HHHHHHHcCCCCCCc
Confidence 4322 234456899999999999999999999999999999999999998643211 111111122222222
Q ss_pred cchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 637 RNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 637 ~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
......+.++.+++.+||+.||++|||++|+++
T Consensus 229 ~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (304)
T 2jam_A 229 PFWDDISESAKDFICHLLEKDPNERYTCEKALS 261 (304)
T ss_dssp TTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred cccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 222234456899999999999999999999985
No 153
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=100.00 E-value=3.2e-41 Score=346.40 Aligned_cols=266 Identities=19% Similarity=0.258 Sum_probs=209.5
Q ss_pred CcccHHHHHHHhcCCCcc-ceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccC-CCcccce
Q 005864 390 GKIVYEEIIRATKNFDAE-QCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIR-HRNIVKF 466 (673)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~-~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l 466 (673)
+.+.++......+.|.+. +.||+|+||+||+|... +|+.||+|++...... ......+.+|+.++..++ ||||+++
T Consensus 16 ~n~~~~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~~iv~~ 94 (327)
T 3lm5_A 16 ENLYFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRG-QDCRAEILHEIAVLELAKSCPRVINL 94 (327)
T ss_dssp CCCCSBCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETT-EECHHHHHHHHHHHHHTTTCTTBCCE
T ss_pred hhhHHHHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcc-hHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 344455555666778877 88999999999999775 6999999998765333 234677889999999994 6999999
Q ss_pred eeeeecCCeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCC---C
Q 005864 467 YGFCSHPRHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSS---E 543 (673)
Q Consensus 467 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~---~ 543 (673)
++++..++..++||||+++|+|.+++.... ...+++..+..++.|++.||+|||+. +|+||||||+||+++. +
T Consensus 95 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~i~~ql~~~L~~LH~~---givH~Dikp~NIl~~~~~~~ 170 (327)
T 3lm5_A 95 HEVYENTSEIILILEYAAGGEIFSLCLPEL-AEMVSENDVIRLIKQILEGVYYLHQN---NIVHLDLKPQNILLSSIYPL 170 (327)
T ss_dssp EEEEECSSEEEEEEECCTTEEGGGGGSSCC--CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESCBTTB
T ss_pred EEEEEeCCeEEEEEEecCCCcHHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCChHHEEEecCCCC
Confidence 999999999999999999999999986542 24589999999999999999999999 9999999999999998 7
Q ss_pred CceEEecccceeecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccc
Q 005864 544 YEARVSDFGIAKFLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLS 623 (673)
Q Consensus 544 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~ 623 (673)
+.+||+|||++....... ......||+.|+|||++.+..++.++||||+|+++|||++|+.||......+.
T Consensus 171 ~~~kL~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~-------- 241 (327)
T 3lm5_A 171 GDIKIVDFGMSRKIGHAC-ELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQET-------- 241 (327)
T ss_dssp CCEEECCGGGCEEC----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH--------
T ss_pred CcEEEeeCccccccCCcc-ccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHH--------
Confidence 899999999998765432 23446789999999999999999999999999999999999999974322111
Q ss_pred cccccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 624 LNEILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
...+.......+.......+..+.+++.+||+.||++|||++|+++
T Consensus 242 ~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~ 287 (327)
T 3lm5_A 242 YLNISQVNVDYSEETFSSVSQLATDFIQSLLVKNPEKRPTAEICLS 287 (327)
T ss_dssp HHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred HHHHHhcccccCchhhcccCHHHHHHHHHHcCCChhhCcCHHHHhC
Confidence 1111111111122222234456889999999999999999999975
No 154
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=100.00 E-value=9.4e-41 Score=338.62 Aligned_cols=253 Identities=25% Similarity=0.382 Sum_probs=199.2
Q ss_pred cCCCccceeccCCcEEEEEEEeCC----CCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeee-cCCee
Q 005864 402 KNFDAEQCIGIGGQASVYRGELPS----GEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCS-HPRHS 476 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~-~~~~~ 476 (673)
..|++.+.||+|+||+||+|.+.+ +..||+|.+... ......+.+.+|+.++++++||||+++++++. .++..
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 102 (298)
T 3f66_A 25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRI--TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSP 102 (298)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTC--CSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCC
T ss_pred eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccC--CCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCce
Confidence 468888999999999999997642 235899988753 33345678999999999999999999999864 45678
Q ss_pred eEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceee
Q 005864 477 FLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKF 556 (673)
Q Consensus 477 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~ 556 (673)
++||||+++|+|.+++.... ..+++..+..++.|++.||+|||+. +++||||||+||+++.++.+||+|||++..
T Consensus 103 ~~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~ql~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~ 177 (298)
T 3f66_A 103 LVVLPYMKHGDLRNFIRNET--HNPTVKDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARD 177 (298)
T ss_dssp EEEEECCTTCBHHHHHHCTT--CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECSCGGGCC
T ss_pred EEEEeCCCCCCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEECCCCCEEECccccccc
Confidence 99999999999999997643 4578899999999999999999999 999999999999999999999999999986
Q ss_pred cCCCCC----CceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccccccccccccCCC
Q 005864 557 LKPGSS----NWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLSLNEILDPR 631 (673)
Q Consensus 557 ~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (673)
...... ......+|+.|+|||.+.+..++.++||||+|+++|||++ |..||......+ .........
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~--------~~~~~~~~~ 249 (298)
T 3f66_A 178 MYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFD--------ITVYLLQGR 249 (298)
T ss_dssp CSCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTT--------HHHHHHTTC
T ss_pred ccccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHH--------HHHHHhcCC
Confidence 643221 1233557789999999999999999999999999999999 555554322111 111111111
Q ss_pred CCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 632 LPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 632 ~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
...... ..+..+.+++.+||+.||++|||++|+++.|+
T Consensus 250 ~~~~~~---~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~ 287 (298)
T 3f66_A 250 RLLQPE---YCPDPLYEVMLKCWHPKAEMRPSFSELVSRIS 287 (298)
T ss_dssp CCCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CCCCCc---cCCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 111111 12345889999999999999999999999986
No 155
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=100.00 E-value=1.4e-40 Score=344.35 Aligned_cols=258 Identities=24% Similarity=0.356 Sum_probs=203.5
Q ss_pred HHHhcCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhc--cCCCcccceeeeeecCC-
Q 005864 398 IRATKNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTE--IRHRNIVKFYGFCSHPR- 474 (673)
Q Consensus 398 ~~~~~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~l~~~~~~~~- 474 (673)
....++|.+.+.||+|+||+||+|.. +|+.||||++... ..+.+.+|++++.. ++||||+++++++....
T Consensus 38 ~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~------~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~ 110 (342)
T 1b6c_B 38 RTIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR------EERSWFREAEIYQTVMLRHENILGFIAADNKDNG 110 (342)
T ss_dssp HHHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGG------GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCS
T ss_pred ccccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCch------hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCC
Confidence 44457899999999999999999988 5999999998643 23567788888887 78999999999998765
Q ss_pred ---eeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHh--------hcCCCCeEEecCCCCCeEeCCC
Q 005864 475 ---HSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMH--------HDCFPPIVHRDISSKNVLLSSE 543 (673)
Q Consensus 475 ---~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH--------~~~~~~ivH~dlk~~Nill~~~ 543 (673)
..++||||+++|+|.+++... .+++..++.++.|++.||+||| +. +|+||||||+||+++.+
T Consensus 111 ~~~~~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~NIll~~~ 183 (342)
T 1b6c_B 111 TWTQLWLVSDYHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILVKKN 183 (342)
T ss_dssp SCCCEEEEECCCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBC---EEECSCCSGGGEEECTT
T ss_pred ccceeEEEEeecCCCcHHHHHhcc----CccHHHHHHHHHHHHHHHHHHHHHHhhhcccC---CeeeCCCCHHHEEECCC
Confidence 789999999999999999764 4889999999999999999999 77 99999999999999999
Q ss_pred CceEEecccceeecCCCCCC----ceecccccccccccccccC------CcCcchhHHHHHHHHHHHHhC----------
Q 005864 544 YEARVSDFGIAKFLKPGSSN----WTEFAGTFGYVAPELAYTM------KVTEKCDVYSFGVLALEVIKG---------- 603 (673)
Q Consensus 544 ~~~kl~Dfg~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~------~~~~~~Dv~slG~il~el~~g---------- 603 (673)
+.+||+|||++......... .....||+.|+|||.+.+. .++.++||||||+++|||++|
T Consensus 184 ~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~ 263 (342)
T 1b6c_B 184 GTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDY 263 (342)
T ss_dssp SCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCC
T ss_pred CCEEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCccccc
Confidence 99999999999877544322 2345789999999998765 344789999999999999999
Q ss_pred CCCCcccccccccccccccccccccCCCCC--CCCc-chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 604 KHPRDFISLLSSSSSNMNLSLNEILDPRLP--LPSR-NIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 604 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
+.||......... .......+...... .+.. .....+..+.+++.+||+.||++|||+.||++.|+
T Consensus 264 ~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~ 332 (342)
T 1b6c_B 264 QLPYYDLVPSDPS---VEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLS 332 (342)
T ss_dssp CCTTTTTSCSSCC---HHHHHHHHTTSCCCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHH
T ss_pred ccCccccCcCccc---HHHHHHHHHHHHhCCCCcccccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHH
Confidence 6776532211100 00111111111111 1111 12355667999999999999999999999999986
No 156
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=100.00 E-value=7.4e-41 Score=345.58 Aligned_cols=261 Identities=26% Similarity=0.345 Sum_probs=195.6
Q ss_pred hcCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHH--HHHHHHhccCCCcccceeeeee-----cC
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFL--NEIKALTEIRHRNIVKFYGFCS-----HP 473 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~--~e~~~l~~l~h~niv~l~~~~~-----~~ 473 (673)
.++|++.+.||+|+||+||+|+. +++.||||++.... ...+. .|+..+..++||||+++++++. ..
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~------~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~ 84 (336)
T 3g2f_A 12 LDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFAN------RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGR 84 (336)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGG------HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSC
T ss_pred hHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccc------hhhHHHHHHHHHHHhccCcchhhheecccccccCCC
Confidence 36788999999999999999977 78999999986432 22333 3444455689999999998653 23
Q ss_pred CeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcC------CCCeEEecCCCCCeEeCCCCceE
Q 005864 474 RHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDC------FPPIVHRDISSKNVLLSSEYEAR 547 (673)
Q Consensus 474 ~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~------~~~ivH~dlk~~Nill~~~~~~k 547 (673)
...++||||+++|+|.+++.... .++..+..++.|+++||+|||+.. .++|+||||||+||+++.++.+|
T Consensus 85 ~~~~lv~e~~~~g~L~~~l~~~~----~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~k 160 (336)
T 3g2f_A 85 MEYLLVMEYYPNGSLXKYLSLHT----SDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCV 160 (336)
T ss_dssp EEEEEEECCCTTCBHHHHHHHCC----BCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEE
T ss_pred ceEEEEEecCCCCcHHHHHhhcc----cchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEE
Confidence 35689999999999999997653 588899999999999999999873 23899999999999999999999
Q ss_pred EecccceeecCCCC--------CCceeccccccccccccccc-------CCcCcchhHHHHHHHHHHHHhCCCCCccccc
Q 005864 548 VSDFGIAKFLKPGS--------SNWTEFAGTFGYVAPELAYT-------MKVTEKCDVYSFGVLALEVIKGKHPRDFISL 612 (673)
Q Consensus 548 l~Dfg~~~~~~~~~--------~~~~~~~~~~~y~aPE~~~~-------~~~~~~~Dv~slG~il~el~~g~~p~~~~~~ 612 (673)
|+|||++..+.... .......||+.|+|||++.+ ..++.++|||||||++|||++|..||.....
T Consensus 161 L~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~ 240 (336)
T 3g2f_A 161 ISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGES 240 (336)
T ss_dssp ECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSC
T ss_pred EeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccc
Confidence 99999998765322 11224568999999999876 4567899999999999999999887642221
Q ss_pred cccccccc---------cc-----ccccccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 613 LSSSSSNM---------NL-----SLNEILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 613 ~~~~~~~~---------~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
........ .. .......+.++.........+.++.+++.+||+.||++|||++|+++.|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~ 314 (336)
T 3g2f_A 241 VPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMA 314 (336)
T ss_dssp CCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHH
T ss_pred hhHHHHhhhcccCCCchHHHHHhhhcccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHH
Confidence 11100000 00 00111122222222233346667999999999999999999999999886
No 157
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.1e-41 Score=343.99 Aligned_cols=250 Identities=24% Similarity=0.412 Sum_probs=196.1
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCE----EEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCee
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEV----VAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHS 476 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~----vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 476 (673)
++|++.+.||+|+||+||+|.+. +++. ||+|.+.... .....+.+.+|+.++.+++||||+++++++..+. .
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~ 91 (327)
T 3lzb_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT--SPKANKEILDEAYVMASVDNPHVCRLLGICLTST-V 91 (327)
T ss_dssp TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCS--SCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-E
T ss_pred hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeecccc--CHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-c
Confidence 57899999999999999999764 4554 5777765432 2234678899999999999999999999998765 7
Q ss_pred eEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceee
Q 005864 477 FLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKF 556 (673)
Q Consensus 477 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~ 556 (673)
++|+||+++|+|.+++.... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.
T Consensus 92 ~~v~~~~~~g~L~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~ 166 (327)
T 3lzb_A 92 QLITQLMPFGCLLDYVREHK--DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKL 166 (327)
T ss_dssp EEEECCCSSCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTC---
T ss_pred eEEEEecCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHhhC---CCcCCCCCHHHEEEcCCCCEEEccCcceeE
Confidence 89999999999999998754 4588999999999999999999999 999999999999999999999999999987
Q ss_pred cCCCCCC--ceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccccccccccccCC--C
Q 005864 557 LKPGSSN--WTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLSLNEILDP--R 631 (673)
Q Consensus 557 ~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~--~ 631 (673)
....... .....+|+.|+|||.+.+..++.++||||||+++|||++ |+.||+.....+. ...+.. .
T Consensus 167 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~---------~~~~~~~~~ 237 (327)
T 3lzb_A 167 LGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEI---------SSILEKGER 237 (327)
T ss_dssp -------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGH---------HHHHHTTCC
T ss_pred ccCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH---------HHHHHcCCC
Confidence 6443322 233456788999999999999999999999999999999 9999974322111 111111 1
Q ss_pred CCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 632 LPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 632 ~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
.+.+.. .+.++.+++.+||+.||.+|||++|+++.|+
T Consensus 238 ~~~~~~----~~~~l~~li~~~l~~dp~~Rps~~ell~~L~ 274 (327)
T 3lzb_A 238 LPQPPI----CTIDVYMIMRKCWMIDADSRPKFRELIIEFS 274 (327)
T ss_dssp CCCCTT----BCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CCCCcc----CCHHHHHHHHHHcCCChhHCcCHHHHHHHHH
Confidence 222222 2345889999999999999999999999886
No 158
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.7e-40 Score=336.82 Aligned_cols=251 Identities=24% Similarity=0.371 Sum_probs=199.4
Q ss_pred CCCccceeccCCcEEEEEEEeC-C---CCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCee-e
Q 005864 403 NFDAEQCIGIGGQASVYRGELP-S---GEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHS-F 477 (673)
Q Consensus 403 ~~~~~~~ig~G~~g~vy~~~~~-~---~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~-~ 477 (673)
.|...+.||+|+||+||+|.+. + +..||+|.+... ......+.+.+|+.++++++||||+++++++.+.+.. +
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 99 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRI--TEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPH 99 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTC--CSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeecccc--ccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcE
Confidence 4556689999999999999753 2 337999998753 3334567899999999999999999999999876655 9
Q ss_pred EEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeec
Q 005864 478 LVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFL 557 (673)
Q Consensus 478 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~ 557 (673)
+|+||+.+|+|.+++.... ..+++..+..++.|++.||+|||+. +++||||||+||+++.++.+||+|||+++..
T Consensus 100 ~v~e~~~~~~L~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~ 174 (298)
T 3pls_A 100 VLLPYMCHGDLLQFIRSPQ--RNPTVKDLISFGLQVARGMEYLAEQ---KFVHRDLAARNCMLDESFTVKVADFGLARDI 174 (298)
T ss_dssp EEECCCTTCBHHHHHHCTT--CCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECCTTSSCTT
T ss_pred EEEecccCCCHHHHHhccc--cCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEEeCcCCCcccc
Confidence 9999999999999998743 4578999999999999999999999 9999999999999999999999999999865
Q ss_pred CCCC----CCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCC-cccccccccccccccccccccCC-C
Q 005864 558 KPGS----SNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPR-DFISLLSSSSSNMNLSLNEILDP-R 631 (673)
Q Consensus 558 ~~~~----~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~-~~~~~~~~~~~~~~~~~~~~~~~-~ 631 (673)
.... .......+++.|+|||.+.+..++.++||||||+++|||++|..|+ ......+ ....+... .
T Consensus 175 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~--------~~~~~~~~~~ 246 (298)
T 3pls_A 175 LDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFD--------LTHFLAQGRR 246 (298)
T ss_dssp TTGGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGG--------HHHHHHTTCC
T ss_pred cCCcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHHH--------HHHHhhcCCC
Confidence 4321 2223456788999999999999999999999999999999966654 3221110 00111111 1
Q ss_pred CCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 632 LPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 632 ~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
.+.+. ..+..+.+++.+||+.||.+|||++++++.|+
T Consensus 247 ~~~~~----~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~ 283 (298)
T 3pls_A 247 LPQPE----YCPDSLYQVMQQCWEADPAVRPTFRVLVGEVE 283 (298)
T ss_dssp CCCCT----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CCCCc----cchHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence 11111 12345889999999999999999999999986
No 159
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=100.00 E-value=1.4e-40 Score=333.51 Aligned_cols=252 Identities=25% Similarity=0.342 Sum_probs=204.8
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 479 (673)
.++|++.+.||+|+||.||+|... +|+.||||++..... ....+.+.+|+.+++.++||||+++++++.+++..++|
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 83 (276)
T 2yex_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA--VDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLF 83 (276)
T ss_dssp HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGC--TTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccc--hhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEE
Confidence 467899999999999999999775 799999999865432 23467889999999999999999999999999999999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCC
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKP 559 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~ 559 (673)
+||+++++|.+++... ..+++..+..++.|++.||+|||+. +++||||||+||+++.++.+||+|||.+.....
T Consensus 84 ~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~ 157 (276)
T 2yex_A 84 LEYCSGGELFDRIEPD---IGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRY 157 (276)
T ss_dssp EECCTTEEGGGGSBTT---TBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEE
T ss_pred EEecCCCcHHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCChHHEEEccCCCEEEeeCCCccccCC
Confidence 9999999999998754 3588999999999999999999999 999999999999999999999999999986643
Q ss_pred CC--CCceecccccccccccccccCCc-CcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCC
Q 005864 560 GS--SNWTEFAGTFGYVAPELAYTMKV-TEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPS 636 (673)
Q Consensus 560 ~~--~~~~~~~~~~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (673)
.. .......|++.|+|||.+.+..+ +.++||||||+++|||++|+.||+....... ............+
T Consensus 158 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~-------~~~~~~~~~~~~~- 229 (276)
T 2yex_A 158 NNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQ-------EYSDWKEKKTYLN- 229 (276)
T ss_dssp TTEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSH-------HHHHHHTTCTTST-
T ss_pred CcchhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHH-------HHHHhhhcccccC-
Confidence 22 22344678999999999987765 7799999999999999999999974322110 0011111111111
Q ss_pred cchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 637 RNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 637 ~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.....+..+.+++.+||+.||++|||++|+++
T Consensus 230 -~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~ 261 (276)
T 2yex_A 230 -PWKKIDSAPLALLHKILVENPSARITIPDIKK 261 (276)
T ss_dssp -TGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred -chhhcCHHHHHHHHHHCCCCchhCCCHHHHhc
Confidence 11233456889999999999999999999975
No 160
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=100.00 E-value=1.5e-40 Score=356.36 Aligned_cols=258 Identities=20% Similarity=0.294 Sum_probs=197.0
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecC------
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHP------ 473 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~------ 473 (673)
.++|++.+.||+|+||+||+|... +|+.||||++.... ......+.+.+|+.+++.++||||+++++++...
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~-~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~ 139 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPF-QNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEF 139 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGG-GSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTC
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccc-cChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccC
Confidence 367999999999999999999764 68999999997653 2334567888999999999999999999999654
Q ss_pred CeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccc
Q 005864 474 RHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGI 553 (673)
Q Consensus 474 ~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~ 553 (673)
...++||||+++ ++.+.+.. .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+
T Consensus 140 ~~~~lv~E~~~~-~l~~~~~~-----~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDlkp~NIll~~~~~~kl~DFG~ 210 (464)
T 3ttj_A 140 QDVYLVMELMDA-NLCQVIQM-----ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGL 210 (464)
T ss_dssp CEEEEEEECCSE-EHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCC
T ss_pred CeEEEEEeCCCC-CHHHHHhh-----cCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChHhEEEeCCCCEEEEEEEe
Confidence 356999999987 57666643 378899999999999999999999 999999999999999999999999999
Q ss_pred eeecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCccccccccccccc-------------
Q 005864 554 AKFLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNM------------- 620 (673)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~------------- 620 (673)
++..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||......+......
T Consensus 211 a~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~~~~~i~~~lg~p~~~~~~~ 289 (464)
T 3ttj_A 211 ARTAGTS-FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKK 289 (464)
T ss_dssp C-----C-CCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTT
T ss_pred eeecCCC-cccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHH
Confidence 9876432 23455789999999999999999999999999999999999999997543221100000
Q ss_pred -ccccccccCCC----------------CCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 621 -NLSLNEILDPR----------------LPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 621 -~~~~~~~~~~~----------------~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.......+... .+...........++.+++.+||+.||++|||++|+++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~ 355 (464)
T 3ttj_A 290 LQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ 355 (464)
T ss_dssp SCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred cchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 00000011111 11111122223567999999999999999999999985
No 161
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=100.00 E-value=8e-41 Score=362.94 Aligned_cols=252 Identities=25% Similarity=0.388 Sum_probs=202.9
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 479 (673)
.+.|++.+.||+|+||+||+|+.. +++.||+|++....... .....+.+|+.+++.++||||+++++++.+++..++|
T Consensus 36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 114 (494)
T 3lij_A 36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVST-SSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLV 114 (494)
T ss_dssp HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC------CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCc-hHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 346899999999999999999875 68999999987653222 2356788999999999999999999999999999999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCC---CceEEecccceee
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSE---YEARVSDFGIAKF 556 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~---~~~kl~Dfg~~~~ 556 (673)
|||+++|+|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.. +.+||+|||++..
T Consensus 115 ~e~~~~g~L~~~~~~~---~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~ 188 (494)
T 3lij_A 115 MECYKGGELFDEIIHR---MKFNEVDAAVIIKQVLSGVTYLHKH---NIVHRDLKPENLLLESKEKDALIKIVDFGLSAV 188 (494)
T ss_dssp EECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTTCEE
T ss_pred EecCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChhhEEEeCCCCCCcEEEEECCCCeE
Confidence 9999999999998765 3488899999999999999999999 99999999999999764 4599999999987
Q ss_pred cCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCC
Q 005864 557 LKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPS 636 (673)
Q Consensus 557 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (673)
..... ......||+.|+|||++. ..++.++||||+||++|+|++|+.||...... .....+.......+.
T Consensus 189 ~~~~~-~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--------~~~~~i~~~~~~~~~ 258 (494)
T 3lij_A 189 FENQK-KMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQ--------EILRKVEKGKYTFDS 258 (494)
T ss_dssp CBTTB-CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--------HHHHHHHHTCCCCCS
T ss_pred CCCCc-cccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCHH--------HHHHHHHhCCCCCCc
Confidence 75432 334567999999999876 56999999999999999999999999743221 122222233333333
Q ss_pred cchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 637 RNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 637 ~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
..+...+..+.+++.+||+.||.+|||+.|+++
T Consensus 259 ~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~ 291 (494)
T 3lij_A 259 PEWKNVSEGAKDLIKQMLQFDSQRRISAQQALE 291 (494)
T ss_dssp GGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred hhcccCCHHHHHHHHHHCCCChhhCccHHHHhc
Confidence 334445567899999999999999999999875
No 162
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=8.7e-41 Score=363.60 Aligned_cols=253 Identities=25% Similarity=0.353 Sum_probs=205.2
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhh----------hHHHHHHHHHHHHHhccCCCcccceeee
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSE----------ISVQREFLNEIKALTEIRHRNIVKFYGF 469 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~----------~~~~~~~~~e~~~l~~l~h~niv~l~~~ 469 (673)
.++|.+.+.||+|+||+||+|... +++.||+|++....... ....+.+.+|+.++++++||||++++++
T Consensus 35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~ 114 (504)
T 3q5i_A 35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV 114 (504)
T ss_dssp GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence 467999999999999999999775 68899999987643221 1235678999999999999999999999
Q ss_pred eecCCeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCC---ce
Q 005864 470 CSHPRHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEY---EA 546 (673)
Q Consensus 470 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~---~~ 546 (673)
+.+++..++||||+++|+|.+++...+ .+++..+..++.||+.||+|||+. +|+||||||+||+++.++ .+
T Consensus 115 ~~~~~~~~lv~e~~~gg~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~ 188 (504)
T 3q5i_A 115 FEDKKYFYLVTEFYEGGELFEQIINRH---KFDECDAANIMKQILSGICYLHKH---NIVHRDIKPENILLENKNSLLNI 188 (504)
T ss_dssp EECSSEEEEEEECCTTCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESSTTCCSSE
T ss_pred EEcCCEEEEEEecCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCcHHHEEEecCCCCccE
Confidence 999999999999999999999997653 489999999999999999999999 999999999999998775 69
Q ss_pred EEecccceeecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCccccccccccccccccccc
Q 005864 547 RVSDFGIAKFLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNE 626 (673)
Q Consensus 547 kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~ 626 (673)
||+|||++....... ......||+.|+|||.+. ..++.++||||+||++|+|++|+.||..... ......
T Consensus 189 kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~--------~~~~~~ 258 (504)
T 3q5i_A 189 KIVDFGLSSFFSKDY-KLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQND--------QDIIKK 258 (504)
T ss_dssp EECCCTTCEECCTTS-CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--------HHHHHH
T ss_pred EEEECCCCEEcCCCC-ccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCCCH--------HHHHHH
Confidence 999999998775432 334567999999999876 4689999999999999999999999974322 112222
Q ss_pred ccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 627 ILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
+.......+...+...+.++.+++.+||+.||.+|||++|+++
T Consensus 259 i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~ 301 (504)
T 3q5i_A 259 VEKGKYYFDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALN 301 (504)
T ss_dssp HHHCCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHcCCCCCCccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 2233333332233344567999999999999999999999975
No 163
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=100.00 E-value=1.7e-41 Score=340.68 Aligned_cols=255 Identities=22% Similarity=0.349 Sum_probs=204.4
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeee--cCCeee
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCS--HPRHSF 477 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~--~~~~~~ 477 (673)
.++|++.+.||+|+||+||+|... +|+.||+|.+...... ....+.+.+|+.++++++||||+++++++. .....+
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 83 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMT-EAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLY 83 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCC-HHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEE
Confidence 357889999999999999999775 6999999998754322 334678999999999999999999999884 466889
Q ss_pred EEEecccCCChHHHHhcCC-CCccchHHHHHHHHHHHHHHHHHHhhcCCCC-----eEEecCCCCCeEeCCCCceEEecc
Q 005864 478 LVYECLERGSLAEILSNDG-SIKEFSWIVRTNVIKSVANALSYMHHDCFPP-----IVHRDISSKNVLLSSEYEARVSDF 551 (673)
Q Consensus 478 lv~e~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~-----ivH~dlk~~Nill~~~~~~kl~Df 551 (673)
+||||+++|+|.+++.... ....+++..++.++.|++.||+|||+. + ++||||||+||+++.++.+||+||
T Consensus 84 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~~~~~~ivH~dl~p~NIl~~~~~~~kl~df 160 (279)
T 2w5a_A 84 IVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRR---SDGGHTVLHRDLKPANVFLDGKQNVKLGDF 160 (279)
T ss_dssp EEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH---C------CCCCCSGGGEEECSSSCEEECCC
T ss_pred EEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcc---cCCCCeeEEeccchhhEEEcCCCCEEEecC
Confidence 9999999999999997642 223489999999999999999999999 7 999999999999999999999999
Q ss_pred cceeecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCC
Q 005864 552 GIAKFLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPR 631 (673)
Q Consensus 552 g~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (673)
|++..............|++.|+|||.+.+..++.++||||||+++|||++|+.||......+. ...+....
T Consensus 161 g~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~--------~~~i~~~~ 232 (279)
T 2w5a_A 161 GLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKEL--------AGKIREGK 232 (279)
T ss_dssp CHHHHC---CHHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHH--------HHHHHHTC
T ss_pred chheeeccccccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHHHH--------HHHHhhcc
Confidence 9998765433333445789999999999998999999999999999999999999874322111 11111111
Q ss_pred C-CCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHh
Q 005864 632 L-PLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLL 671 (673)
Q Consensus 632 ~-~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L 671 (673)
. ..+. ..+.++.+++.+||+.||++|||++|+++.+
T Consensus 233 ~~~~~~----~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~ 269 (279)
T 2w5a_A 233 FRRIPY----RYSDELNEIITRMLNLKDYHRPSVEEILENP 269 (279)
T ss_dssp CCCCCT----TSCHHHHHHHHHHTCSSGGGSCCHHHHHTST
T ss_pred cccCCc----ccCHHHHHHHHHHcCCCcccCCCHHHHHhCh
Confidence 1 1111 2234588999999999999999999999865
No 164
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=100.00 E-value=9.7e-41 Score=335.43 Aligned_cols=252 Identities=21% Similarity=0.359 Sum_probs=200.4
Q ss_pred hcCCCccceeccCCcEEEEEEEeCC----CCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCee
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELPS----GEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHS 476 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 476 (673)
.++|.+.+.||+|+||+||+|.+.. +..||+|.+.... .....+.+.+|+.++++++||||+++++++.+ +..
T Consensus 11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~ 87 (281)
T 3cc6_A 11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDC--TLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPT 87 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTS--CHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSC
T ss_pred ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEeccccc--CchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCC
Confidence 4678899999999999999997532 3469999987642 23346789999999999999999999999865 456
Q ss_pred eEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceee
Q 005864 477 FLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKF 556 (673)
Q Consensus 477 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~ 556 (673)
++||||+++++|.+++...+ ..+++..+..++.|+++||+|||+. +++||||||+||+++.++.+||+|||++..
T Consensus 88 ~~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~ 162 (281)
T 3cc6_A 88 WIIMELYPYGELGHYLERNK--NSLKVLTLVLYSLQICKAMAYLESI---NCVHRDIAVRNILVASPECVKLGDFGLSRY 162 (281)
T ss_dssp EEEEECCTTCBHHHHHHHHT--TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEEETTEEEECCCCGGGC
T ss_pred EEEEecCCCCCHHHHHHhcc--ccCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEECCCCcEEeCccCCCcc
Confidence 89999999999999997653 3588999999999999999999999 999999999999999999999999999986
Q ss_pred cCCCCC-CceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccccccccccccC-CCCC
Q 005864 557 LKPGSS-NWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLSLNEILD-PRLP 633 (673)
Q Consensus 557 ~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 633 (673)
...... ......+++.|+|||.+.+..++.++||||||+++|||++ |+.||......+. ...+.. ...+
T Consensus 163 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~~--------~~~~~~~~~~~ 234 (281)
T 3cc6_A 163 IEDEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDV--------IGVLEKGDRLP 234 (281)
T ss_dssp C---------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGGH--------HHHHHHTCCCC
T ss_pred cccccccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHHH--------HHHHhcCCCCC
Confidence 644322 2233456789999999998899999999999999999998 9999863322111 000000 1112
Q ss_pred CCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 634 LPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 634 ~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
.+.. .+..+.+++.+||+.||++|||+.|+++.|+
T Consensus 235 ~~~~----~~~~l~~li~~~l~~~p~~Rps~~ell~~L~ 269 (281)
T 3cc6_A 235 KPDL----CPPVLYTLMTRCWDYDPSDRPRFTELVCSLS 269 (281)
T ss_dssp CCTT----CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CCCC----CCHHHHHHHHHHccCCchhCcCHHHHHHHHH
Confidence 2211 2345889999999999999999999999886
No 165
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=100.00 E-value=4.3e-41 Score=344.26 Aligned_cols=264 Identities=23% Similarity=0.353 Sum_probs=209.8
Q ss_pred HHHHHHHhcCCCccceeccCCcEEEEEEEe------CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhcc-CCCcccce
Q 005864 394 YEEIIRATKNFDAEQCIGIGGQASVYRGEL------PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEI-RHRNIVKF 466 (673)
Q Consensus 394 ~~~~~~~~~~~~~~~~ig~G~~g~vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l 466 (673)
..++....++|++.+.||+|+||+||+|.+ .+++.||||+++... .....+.+.+|+.++.++ +||||+++
T Consensus 19 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hp~iv~~ 96 (316)
T 2xir_A 19 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA--THSEHRALMSELKILIHIGHHLNVVNL 96 (316)
T ss_dssp HHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred ccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCC--CcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence 334444567899999999999999999974 357899999987643 233467899999999999 79999999
Q ss_pred eeeeecCC-eeeEEEecccCCChHHHHhcCCC-------------CccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEec
Q 005864 467 YGFCSHPR-HSFLVYECLERGSLAEILSNDGS-------------IKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRD 532 (673)
Q Consensus 467 ~~~~~~~~-~~~lv~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~d 532 (673)
++++..++ ..++||||+++|+|.+++..... ...+++..+..++.|+++||+|||+. +|+|||
T Consensus 97 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~d 173 (316)
T 2xir_A 97 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRD 173 (316)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHT---TCCCSC
T ss_pred EEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhC---Cccccc
Confidence 99987654 58999999999999999987542 12288999999999999999999999 999999
Q ss_pred CCCCCeEeCCCCceEEecccceeecCCCCCC--ceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcc
Q 005864 533 ISSKNVLLSSEYEARVSDFGIAKFLKPGSSN--WTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDF 609 (673)
Q Consensus 533 lk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~ 609 (673)
|||+||+++.++.+||+|||++......... .....+|+.|+|||.+.+..++.++||||||+++|||++ |..||..
T Consensus 174 ikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~ 253 (316)
T 2xir_A 174 LAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG 253 (316)
T ss_dssp CSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred CccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcc
Confidence 9999999999999999999999876543322 223457889999999999999999999999999999998 9999874
Q ss_pred cccccccccccccccccccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 610 ISLLSSSSSNMNLSLNEILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
........ ...... .....+. ..+..+.+++.+||+.||.+|||+.|+++.|+
T Consensus 254 ~~~~~~~~----~~~~~~--~~~~~~~----~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~ 306 (316)
T 2xir_A 254 VKIDEEFC----RRLKEG--TRMRAPD----YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLG 306 (316)
T ss_dssp CCCSHHHH----HHHHHT--CCCCCCT----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred cchhHHHH----HHhccC--ccCCCCC----CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 32211100 000000 0111111 12345889999999999999999999999886
No 166
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=100.00 E-value=3.4e-41 Score=339.26 Aligned_cols=252 Identities=27% Similarity=0.363 Sum_probs=196.8
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
++|.+.+.||+|+||+||+|... +|+.||+|++..... ....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 99 (285)
T 3is5_A 22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRS--QVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVM 99 (285)
T ss_dssp HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGC--CSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hheeecceeccCCCeEEEEEEEccCCceEEEEEeecccc--chhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEE
Confidence 56889999999999999999764 689999999876532 223578899999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCC-CCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEe---CCCCceEEecccceee
Q 005864 481 ECLERGSLAEILSNDG-SIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLL---SSEYEARVSDFGIAKF 556 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill---~~~~~~kl~Dfg~~~~ 556 (673)
||+++|+|.+++.... ....+++..+..++.|++.||+|||+. +|+||||||+||++ +.++.+||+|||++..
T Consensus 100 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~ 176 (285)
T 3is5_A 100 ETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQ---HVVHKDLKPENILFQDTSPHSPIKIIDFGLAEL 176 (285)
T ss_dssp CCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC
T ss_pred EeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCCCHHHEEEecCCCCCCEEEEeeeccee
Confidence 9999999999986431 124588999999999999999999999 99999999999999 4567899999999986
Q ss_pred cCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCC
Q 005864 557 LKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPS 636 (673)
Q Consensus 557 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (673)
.... .......|++.|+|||.+. ..++.++||||+|+++|||++|+.||......+.... ............
T Consensus 177 ~~~~-~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~~~~~------~~~~~~~~~~~~ 248 (285)
T 3is5_A 177 FKSD-EHSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQQK------ATYKEPNYAVEC 248 (285)
T ss_dssp -----------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHH------HHHCCCCCCC--
T ss_pred cCCc-ccCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCHHHHHhh------hccCCccccccc
Confidence 6433 2234567899999999875 5689999999999999999999999974322111000 000011111110
Q ss_pred cchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 637 RNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 637 ~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
...+.++.+++.+||+.||++|||++|+++
T Consensus 249 ---~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 278 (285)
T 3is5_A 249 ---RPLTPQAVDLLKQMLTKDPERRPSAAQVLH 278 (285)
T ss_dssp ---CCCCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred ---CcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 012345889999999999999999999985
No 167
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.6e-41 Score=348.84 Aligned_cols=264 Identities=23% Similarity=0.273 Sum_probs=199.2
Q ss_pred HhcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhh--hHHHHHHHHHHHHHhccCCCcccceeeeeecCCee
Q 005864 400 ATKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSE--ISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHS 476 (673)
Q Consensus 400 ~~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 476 (673)
..++|++.+.||+|+||.||+|... +|+.||||++....... ....+.+.+|++++++++||||+++++++.+.+..
T Consensus 8 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 87 (346)
T 1ua2_A 8 RAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNI 87 (346)
T ss_dssp -----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCC
T ss_pred HhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCce
Confidence 4578999999999999999999875 59999999987543222 11234688999999999999999999999999999
Q ss_pred eEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceee
Q 005864 477 FLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKF 556 (673)
Q Consensus 477 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~ 556 (673)
++||||+++ +|.+++.... ..+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++.
T Consensus 88 ~lv~e~~~~-~l~~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~ 161 (346)
T 1ua2_A 88 SLVFDFMET-DLEVIIKDNS--LVLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADFGLAKS 161 (346)
T ss_dssp EEEEECCSE-EHHHHHTTCC--SSCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCCGGGST
T ss_pred EEEEEcCCC-CHHHHHHhcC--cCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEEcCCCCEEEEeccccee
Confidence 999999987 8999887653 4578889999999999999999999 999999999999999999999999999987
Q ss_pred cCCCCCCceecccccccccccccccC-CcCcchhHHHHHHHHHHHHhCCCCCcccccccccccc-------cccccccc-
Q 005864 557 LKPGSSNWTEFAGTFGYVAPELAYTM-KVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSN-------MNLSLNEI- 627 (673)
Q Consensus 557 ~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~-------~~~~~~~~- 627 (673)
............+|+.|+|||.+.+. .++.++||||+||++|||++|..||......+..... ....+...
T Consensus 162 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 241 (346)
T 1ua2_A 162 FGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMC 241 (346)
T ss_dssp TTSCCCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTT
T ss_pred ccCCcccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHcCCCChhhhhhhc
Confidence 75544445567789999999998754 4889999999999999999999998754322110000 00000000
Q ss_pred -----c-CCCCCCCC--cchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 628 -----L-DPRLPLPS--RNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 628 -----~-~~~~~~~~--~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
. ....+... ......+.++.+++.+||+.||++|||++|+++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 291 (346)
T 1ua2_A 242 SLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK 291 (346)
T ss_dssp SSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred cCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhc
Confidence 0 00000000 001122356899999999999999999999986
No 168
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=100.00 E-value=1e-40 Score=337.80 Aligned_cols=252 Identities=24% Similarity=0.330 Sum_probs=199.1
Q ss_pred CCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEEe
Q 005864 403 NFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVYE 481 (673)
Q Consensus 403 ~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 481 (673)
+|.....||+|+||+||+|.. .+++.||||.+.... ....+.+.+|+.+++.++||||+++++++...+..++|||
T Consensus 23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 99 (295)
T 2clq_A 23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERD---SRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFME 99 (295)
T ss_dssp TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCC---C---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCc---hHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEE
Confidence 345556899999999999976 468899999986542 2345778999999999999999999999999999999999
Q ss_pred cccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCC-CCceEEecccceeecCCC
Q 005864 482 CLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSS-EYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 482 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~-~~~~kl~Dfg~~~~~~~~ 560 (673)
|+++++|.+++........+++..+..++.|++.||+|||+. +++||||||+||+++. ++.+||+|||++......
T Consensus 100 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~ 176 (295)
T 2clq_A 100 QVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDN---QIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGI 176 (295)
T ss_dssp CCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTCCEEECCTTTCEESCC-
T ss_pred eCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhC---CEEccCCChhhEEEECCCCCEEEeecccccccCCC
Confidence 999999999998765445577889999999999999999999 9999999999999987 899999999999877544
Q ss_pred CCCceecccccccccccccccCC--cCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcc
Q 005864 561 SSNWTEFAGTFGYVAPELAYTMK--VTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRN 638 (673)
Q Consensus 561 ~~~~~~~~~~~~y~aPE~~~~~~--~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (673)
........|++.|+|||.+.+.. ++.++||||||+++|||++|+.||......... ... ..........+.
T Consensus 177 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~---~~~--~~~~~~~~~~~~-- 249 (295)
T 2clq_A 177 NPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAA---MFK--VGMFKVHPEIPE-- 249 (295)
T ss_dssp ----CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHH---HHH--HHHHCCCCCCCT--
T ss_pred CCcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHH---HHh--hccccccccccc--
Confidence 33344567899999999987644 789999999999999999999998643211100 000 000011111111
Q ss_pred hHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 639 IQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 639 ~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
..+.++.+++.+||+.||++|||+.|+++
T Consensus 250 --~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 278 (295)
T 2clq_A 250 --SMSAEAKAFILKCFEPDPDKRACANDLLV 278 (295)
T ss_dssp --TSCHHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred --cCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 22345889999999999999999999985
No 169
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=2.1e-40 Score=345.95 Aligned_cols=247 Identities=17% Similarity=0.127 Sum_probs=199.4
Q ss_pred hcCCCccceeccCCcEEEEEEE------eCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccC---CCcccceeeeee
Q 005864 401 TKNFDAEQCIGIGGQASVYRGE------LPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIR---HRNIVKFYGFCS 471 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~------~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~---h~niv~l~~~~~ 471 (673)
.++|.+.+.||+|+||+||+|. ..+++.||||++.... ..++..|++++..++ |+||+++++++.
T Consensus 64 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~------~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~ 137 (365)
T 3e7e_A 64 SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN------PWEFYIGTQLMERLKPSMQHMFMKFYSAHL 137 (365)
T ss_dssp SSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCC------HHHHHHHHHHHHHSCGGGGGGBCCEEEEEE
T ss_pred CEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCC------hhHHHHHHHHHHHhhhhhhhhhhhhheeee
Confidence 3678899999999999999993 4568999999986542 345677888888886 999999999999
Q ss_pred cCCeeeEEEecccCCChHHHHhcCC--CCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCC-------
Q 005864 472 HPRHSFLVYECLERGSLAEILSNDG--SIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSS------- 542 (673)
Q Consensus 472 ~~~~~~lv~e~~~~gsL~~~l~~~~--~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~------- 542 (673)
.++..++||||+++|+|.+++...+ ....+++..+..++.||++||+|||+. +|+||||||+||+++.
T Consensus 138 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~---~ivHrDiKp~NIll~~~~~~~~~ 214 (365)
T 3e7e_A 138 FQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDC---EIIHGDIKPDNFILGNGFLEQDD 214 (365)
T ss_dssp CSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECGGGTCC--
T ss_pred cCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEecccccCccc
Confidence 9999999999999999999997532 235689999999999999999999999 9999999999999998
Q ss_pred ----CCceEEecccceeecCCC--CCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCccccccccc
Q 005864 543 ----EYEARVSDFGIAKFLKPG--SSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSS 616 (673)
Q Consensus 543 ----~~~~kl~Dfg~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~ 616 (673)
++.+||+|||+++.+... ........||++|+|||++.+..++.++|||||||++|||++|+.||......
T Consensus 215 ~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~--- 291 (365)
T 3e7e_A 215 EDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGG--- 291 (365)
T ss_dssp ----CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETT---
T ss_pred cccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCC---
Confidence 899999999999876422 22334567999999999999999999999999999999999999998632110
Q ss_pred ccccccccccccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCC-CCHHHHHHHhh
Q 005864 617 SSNMNLSLNEILDPRLPLPSRNIQDKLISILEVALLCLEESPESR-PTMQTVCQLLC 672 (673)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~R-ps~~~v~~~L~ 672 (673)
... ....+.... ....+.+++..|++.+|.+| |+++++.+.|+
T Consensus 292 ----~~~----~~~~~~~~~-----~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~ 335 (365)
T 3e7e_A 292 ----ECK----PEGLFRRLP-----HLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLK 335 (365)
T ss_dssp ----EEE----ECSCCTTCS-----SHHHHHHHHHHHHCCCCTTCCCCHHHHHHHHH
T ss_pred ----cee----echhccccC-----cHHHHHHHHHHHcCCCCCCcchHHHHHHHHHH
Confidence 001 111111111 13347789999999999998 67888777664
No 170
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=100.00 E-value=1.9e-40 Score=335.05 Aligned_cols=252 Identities=26% Similarity=0.388 Sum_probs=201.7
Q ss_pred hcCCCccc-eeccCCcEEEEEEEe---CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCee
Q 005864 401 TKNFDAEQ-CIGIGGQASVYRGEL---PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHS 476 (673)
Q Consensus 401 ~~~~~~~~-~ig~G~~g~vy~~~~---~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 476 (673)
..+|.+.+ .||+|+||+||+|.+ .+++.||||+++... ......+.+.+|+.++..++||||+++++++ ..+..
T Consensus 15 ~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~ 92 (291)
T 1xbb_A 15 RKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEA-NDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESW 92 (291)
T ss_dssp GGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC------CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSE
T ss_pred chhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccc-cCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCc
Confidence 35677777 999999999999954 347889999987643 2334467899999999999999999999999 56678
Q ss_pred eEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceee
Q 005864 477 FLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKF 556 (673)
Q Consensus 477 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~ 556 (673)
++||||+++++|.+++...+ .+++..+..++.|++.||+|||+. +++||||||+||+++.++.+||+|||++..
T Consensus 93 ~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~ 166 (291)
T 1xbb_A 93 MLVMEMAELGPLNKYLQQNR---HVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKA 166 (291)
T ss_dssp EEEEECCTTEEHHHHHHHCT---TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEE
T ss_pred EEEEEeCCCCCHHHHHHhCc---CCCHHHHHHHHHHHHHHHHHHHhC---CeEcCCCCcceEEEeCCCcEEEccCCccee
Confidence 99999999999999998753 488899999999999999999999 999999999999999999999999999987
Q ss_pred cCCCCCCc---eecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccccccccccccCC-C
Q 005864 557 LKPGSSNW---TEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLSLNEILDP-R 631 (673)
Q Consensus 557 ~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~ 631 (673)
........ ....+++.|+|||.+.+..++.++||||||+++|||++ |+.||......+. ...+... .
T Consensus 167 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~--------~~~~~~~~~ 238 (291)
T 1xbb_A 167 LRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEV--------TAMLEKGER 238 (291)
T ss_dssp CCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHH--------HHHHHTTCC
T ss_pred eccCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHHH--------HHHHHcCCC
Confidence 75443321 22345688999999998889999999999999999999 9999874322111 0111111 1
Q ss_pred CCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 632 LPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 632 ~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
...+. ..+..+.+++.+||+.||++|||+.|+++.|+
T Consensus 239 ~~~~~----~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~ 275 (291)
T 1xbb_A 239 MGCPA----GCPREMYDLMNLCWTYDVENRPGFAAVELRLR 275 (291)
T ss_dssp CCCCT----TCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHH
T ss_pred CCCCC----CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 11111 23346899999999999999999999999986
No 171
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=100.00 E-value=1.1e-40 Score=340.59 Aligned_cols=258 Identities=23% Similarity=0.340 Sum_probs=196.6
Q ss_pred HHhcCCCccceeccCCcEEEEEEEeC----CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCC
Q 005864 399 RATKNFDAEQCIGIGGQASVYRGELP----SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPR 474 (673)
Q Consensus 399 ~~~~~~~~~~~ig~G~~g~vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~ 474 (673)
...++|.+.+.||+|+||+||+|... +++.||+|.++.... .....+.+.+|+.++.+++||||+++++++.+.+
T Consensus 31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~ 109 (313)
T 3brb_A 31 IDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNS-SQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMS 109 (313)
T ss_dssp CCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CC-CHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC--
T ss_pred cCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEecccc-chhHHHHHHHHHHHHhcCCCCCeeeeeEEEeecc
Confidence 34577889999999999999999653 345899999875432 2334678999999999999999999999997755
Q ss_pred -----eeeEEEecccCCChHHHHhcCC---CCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCce
Q 005864 475 -----HSFLVYECLERGSLAEILSNDG---SIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEA 546 (673)
Q Consensus 475 -----~~~lv~e~~~~gsL~~~l~~~~---~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~ 546 (673)
..++||||+++|+|.+++.... ....+++..++.++.|+++||.|||+. +|+||||||+||+++.++.+
T Consensus 110 ~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~ 186 (313)
T 3brb_A 110 SQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNR---NFLHRDLAARNCMLRDDMTV 186 (313)
T ss_dssp -----CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCSGGGEEECTTSCE
T ss_pred ccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcE
Confidence 3499999999999999985431 235689999999999999999999999 99999999999999999999
Q ss_pred EEecccceeecCCCCC--CceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccccccc
Q 005864 547 RVSDFGIAKFLKPGSS--NWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLS 623 (673)
Q Consensus 547 kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~ 623 (673)
||+|||++........ ......+++.|+|||.+.+..++.++||||||+++|||++ |..||......+ .
T Consensus 187 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~--------~ 258 (313)
T 3brb_A 187 CVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHE--------M 258 (313)
T ss_dssp EECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG--------H
T ss_pred EEeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHH--------H
Confidence 9999999987644321 2233457889999999999999999999999999999999 889987432211 1
Q ss_pred cccccCCC-CCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 624 LNEILDPR-LPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 624 ~~~~~~~~-~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
...+.... ...+ ...+..+.+++.+||+.||++|||+.++++.|+
T Consensus 259 ~~~~~~~~~~~~~----~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~ 304 (313)
T 3brb_A 259 YDYLLHGHRLKQP----EDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLE 304 (313)
T ss_dssp HHHHHTTCCCCCB----TTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHH
T ss_pred HHHHHcCCCCCCC----ccccHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 11111111 1111 123346899999999999999999999999986
No 172
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=100.00 E-value=1.8e-40 Score=337.34 Aligned_cols=248 Identities=25% Similarity=0.402 Sum_probs=206.4
Q ss_pred cCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
+.|+..+.||+|+||.||+|.. .+|+.||+|++..... ....+.+.+|+.++..++||||+++++++.+++..++||
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 99 (303)
T 3a7i_A 22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEA--EDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIM 99 (303)
T ss_dssp GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTC--STTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEeccccc--HHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEE
Confidence 5688999999999999999976 4699999999875432 234678999999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
||+++++|.+++... .+++..+..++.|++.||.|||+. +++||||||+||+++.++.+||+|||++......
T Consensus 100 e~~~~~~L~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~ 172 (303)
T 3a7i_A 100 EYLGGGSALDLLEPG----PLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDT 172 (303)
T ss_dssp ECCTTEEHHHHHTTS----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECBTT
T ss_pred EeCCCCcHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChheEEECCCCCEEEeecccceecCcc
Confidence 999999999999753 488999999999999999999999 9999999999999999999999999999887654
Q ss_pred CCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcchH
Q 005864 561 SSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRNIQ 640 (673)
Q Consensus 561 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (673)
........|++.|+|||.+.+..++.++||||||+++|||++|+.||.......... .......+.+ +.
T Consensus 173 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~-----~~~~~~~~~~--~~---- 241 (303)
T 3a7i_A 173 QIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKVLF-----LIPKNNPPTL--EG---- 241 (303)
T ss_dssp BCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHH-----HHHHSCCCCC--CS----
T ss_pred ccccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHHHHHH-----HhhcCCCCCC--cc----
Confidence 444455678999999999999999999999999999999999999987432211100 0000001111 11
Q ss_pred HHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 641 DKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 641 ~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
..+..+.+++.+||+.||++|||+.|+++
T Consensus 242 ~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 270 (303)
T 3a7i_A 242 NYSKPLKEFVEACLNKEPSFRPTAKELLK 270 (303)
T ss_dssp SCCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred ccCHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence 12345889999999999999999999975
No 173
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=4.6e-41 Score=342.51 Aligned_cols=264 Identities=23% Similarity=0.309 Sum_probs=198.2
Q ss_pred HhcCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhh--hhHHHHHHHHHHHHHhcc---CCCcccceeeeeecC
Q 005864 400 ATKNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLS--EISVQREFLNEIKALTEI---RHRNIVKFYGFCSHP 473 (673)
Q Consensus 400 ~~~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~--~~~~~~~~~~e~~~l~~l---~h~niv~l~~~~~~~ 473 (673)
..++|++.+.||+|+||+||+|++ .+|+.||||++...... .......+.+|+.+++++ +||||+++++++...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~ 86 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS 86 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence 357899999999999999999986 47999999998653221 111123455677776666 499999999999765
Q ss_pred C-----eeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEE
Q 005864 474 R-----HSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARV 548 (673)
Q Consensus 474 ~-----~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl 548 (673)
. ..++||||++ |+|.+++..... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~~-~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl 161 (308)
T 3g33_A 87 RTDREIKVTLVFEHVD-QDLRTYLDKAPP-PGLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGGTVKL 161 (308)
T ss_dssp CSSSEEEEEEEEECCC-CBHHHHHHTCCT-TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCTTTEEECTTSCEEE
T ss_pred CCCCceeEEEEehhhh-cCHHHHHhhccC-CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCEEE
Confidence 4 4789999998 599999987643 3489999999999999999999999 9999999999999999999999
Q ss_pred ecccceeecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccc-------cc
Q 005864 549 SDFGIAKFLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSN-------MN 621 (673)
Q Consensus 549 ~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~-------~~ 621 (673)
+|||+++..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||......+..... ..
T Consensus 162 ~Dfg~a~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~ 240 (308)
T 3g33_A 162 ADFGLARIYSYQ-MALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPE 240 (308)
T ss_dssp CSCSCTTTSTTC-CCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHHHHHHHHCCCCT
T ss_pred eeCccccccCCC-cccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCh
Confidence 999999865432 2334567899999999999999999999999999999999999999643322110000 00
Q ss_pred cccc-------cccCCCCCCC-CcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 622 LSLN-------EILDPRLPLP-SRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 622 ~~~~-------~~~~~~~~~~-~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
..+. ..+.+..+.+ .....+.+.++.+++.+||+.||++|||+.|+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 296 (308)
T 3g33_A 241 DDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQ 296 (308)
T ss_dssp TTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred hhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhc
Confidence 0000 0000000000 0001123356889999999999999999999985
No 174
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=100.00 E-value=4.2e-41 Score=340.03 Aligned_cols=253 Identities=28% Similarity=0.454 Sum_probs=195.9
Q ss_pred cCCCccceeccCCcEEEEEEEeC--CCC--EEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeee
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP--SGE--VVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSF 477 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~--~~~--~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 477 (673)
++|++.+.||+|+||+||+|++. +++ .||||+++..........+.+.+|+.++.+++||||+++++++..+. .+
T Consensus 18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~~ 96 (291)
T 1u46_A 18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-MK 96 (291)
T ss_dssp GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-CE
T ss_pred hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-ce
Confidence 57899999999999999999753 333 68999987654444556788999999999999999999999998765 88
Q ss_pred EEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeec
Q 005864 478 LVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFL 557 (673)
Q Consensus 478 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~ 557 (673)
+|+||+++|+|.+++.... ..+++..+..++.|+++||+|||+. +++||||||+||+++.++.+||+|||++...
T Consensus 97 ~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~ 171 (291)
T 1u46_A 97 MVTELAPLGSLLDRLRKHQ--GHFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKIGDFGLMRAL 171 (291)
T ss_dssp EEEECCTTCBHHHHHHHHG--GGSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCEEC
T ss_pred eeEecccCCCHHHHHHhcc--CCcCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEEcCCCCEEEccccccccc
Confidence 9999999999999997643 4588999999999999999999999 9999999999999999999999999999887
Q ss_pred CCCCCC---ceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccccccccccccCC--C
Q 005864 558 KPGSSN---WTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLSLNEILDP--R 631 (673)
Q Consensus 558 ~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~--~ 631 (673)
...... .....+++.|+|||.+.+..++.++||||||+++|||++ |+.||......+ ....+... .
T Consensus 172 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~--------~~~~~~~~~~~ 243 (291)
T 1u46_A 172 PQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQ--------ILHKIDKEGER 243 (291)
T ss_dssp CC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH--------HHHHHHTSCCC
T ss_pred cccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHHH--------HHHHHHccCCC
Confidence 544332 223457788999999998889999999999999999999 999987432211 11111111 1
Q ss_pred CCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 632 LPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 632 ~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
.+.+ ...+.++.+++.+||+.||++|||+.++++.|+
T Consensus 244 ~~~~----~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~ 280 (291)
T 1u46_A 244 LPRP----EDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLL 280 (291)
T ss_dssp CCCC----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CCCC----cCcCHHHHHHHHHHccCCcccCcCHHHHHHHHH
Confidence 1111 123446899999999999999999999999886
No 175
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=100.00 E-value=8.3e-41 Score=349.63 Aligned_cols=256 Identities=11% Similarity=0.018 Sum_probs=184.7
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhcc--CCCccccee-------eeee
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEI--RHRNIVKFY-------GFCS 471 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l--~h~niv~l~-------~~~~ 471 (673)
.+|.+.+.||+|+||+||+|.+. +|+.||||++...........+.+.+|+.++..+ +||||++++ +++.
T Consensus 62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~~ 141 (371)
T 3q60_A 62 RKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVA 141 (371)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEEE
T ss_pred eeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhee
Confidence 45888999999999999999865 7999999999876544555567788885544444 699988755 4443
Q ss_pred cC-----------------CeeeEEEecccCCChHHHHhcCCCCccchHHHH------HHHHHHHHHHHHHHhhcCCCCe
Q 005864 472 HP-----------------RHSFLVYECLERGSLAEILSNDGSIKEFSWIVR------TNVIKSVANALSYMHHDCFPPI 528 (673)
Q Consensus 472 ~~-----------------~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~------~~i~~~i~~~l~~LH~~~~~~i 528 (673)
.+ ...++||||++ |+|.+++...+ ..+.+..+ ..++.||++||+|||++ +|
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~--~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~---~i 215 (371)
T 3q60_A 142 VQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLD--FVYVFRGDEGILALHILTAQLIRLAANLQSK---GL 215 (371)
T ss_dssp ETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHH--HSCCCCHHHHHHHHHHHHHHHHHHHHHHHHT---TE
T ss_pred cCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhc--cccchhhhhhhhhHHHHHHHHHHHHHHHHHC---CC
Confidence 22 33799999999 79999998642 22344555 77889999999999999 99
Q ss_pred EEecCCCCCeEeCCCCceEEecccceeecCCCCCCceeccccccccccccccc--CCcCcchhHHHHHHHHHHHHhCCCC
Q 005864 529 VHRDISSKNVLLSSEYEARVSDFGIAKFLKPGSSNWTEFAGTFGYVAPELAYT--MKVTEKCDVYSFGVLALEVIKGKHP 606 (673)
Q Consensus 529 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--~~~~~~~Dv~slG~il~el~~g~~p 606 (673)
+||||||+||+++.++.+||+|||+++.... ......+++.|+|||++.+ ..++.++|||||||++|||++|+.|
T Consensus 216 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~P 292 (371)
T 3q60_A 216 VHGHFTPDNLFIMPDGRLMLGDVSALWKVGT---RGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLP 292 (371)
T ss_dssp EETTCSGGGEEECTTSCEEECCGGGEEETTC---EEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCS
T ss_pred ccCcCCHHHEEECCCCCEEEEecceeeecCC---CccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999987642 2224567799999999987 6799999999999999999999999
Q ss_pred CcccccccccccccccccccccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 607 RDFISLLSSSSSNMNLSLNEILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
|........... ...............+ .....+..+.+++.+||+.||++|||+.|+++
T Consensus 293 f~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 352 (371)
T 3q60_A 293 FGLVTPGIKGSW-KRPSLRVPGTDSLAFG--SCTPLPDFVKTLIGRFLNFDRRRRLLPLEAME 352 (371)
T ss_dssp TTBCCTTCTTCC-CBCCTTSCCCCSCCCT--TSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTT
T ss_pred CCCcCcccccch-hhhhhhhccccccchh--hccCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 975422111000 0000011111111111 11133456899999999999999999999874
No 176
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=100.00 E-value=1.5e-40 Score=336.75 Aligned_cols=257 Identities=18% Similarity=0.256 Sum_probs=199.8
Q ss_pred HhcCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeee-ecCCeee
Q 005864 400 ATKNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFC-SHPRHSF 477 (673)
Q Consensus 400 ~~~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~-~~~~~~~ 477 (673)
..++|++.+.||+|+||+||+|.. .+++.||||++..... .+.+.+|+.++..++|++++..++++ ..++..+
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~ 81 (296)
T 4hgt_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK-----HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNV 81 (296)
T ss_dssp ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC--------CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEE
T ss_pred cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc-----chHHHHHHHHHHHhcCCCCCCeeeeecCCCCceE
Confidence 457899999999999999999976 5789999998654321 23577899999999988877777666 5677889
Q ss_pred EEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEe---CCCCceEEecccce
Q 005864 478 LVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLL---SSEYEARVSDFGIA 554 (673)
Q Consensus 478 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill---~~~~~~kl~Dfg~~ 554 (673)
+||||+ +++|.+++.... ..+++..+..++.|++.||+|||+. +|+||||||+||++ +.++.+||+|||++
T Consensus 82 lv~e~~-~~~L~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a 155 (296)
T 4hgt_A 82 MVMELL-GPSLEDLFNFCS--RKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLA 155 (296)
T ss_dssp EEEECC-CCBHHHHHHHTT--SCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECCGGGTTCEEECCCTTC
T ss_pred EEEEcc-CCCHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeeeeccCCCCeEEEecCccc
Confidence 999999 899999998543 3589999999999999999999999 99999999999999 78899999999999
Q ss_pred eecCCCCC-------CceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccc
Q 005864 555 KFLKPGSS-------NWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEI 627 (673)
Q Consensus 555 ~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~ 627 (673)
........ ......||+.|+|||.+.+..++.++|||||||++|||++|+.||......... .....+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~-----~~~~~~ 230 (296)
T 4hgt_A 156 KKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKR-----QKYERI 230 (296)
T ss_dssp EECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSS-----SHHHHH
T ss_pred eeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhh-----hhhhhh
Confidence 87754332 123467899999999999999999999999999999999999999753321110 011111
Q ss_pred cCCCCCCCC-cchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 628 LDPRLPLPS-RNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 628 ~~~~~~~~~-~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
.......+. ......+.++.+++.+||+.||++|||++++++.|+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~ 276 (296)
T 4hgt_A 231 SEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFR 276 (296)
T ss_dssp HHHHHHSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHH
T ss_pred hcccccchhhhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 111111110 000112356899999999999999999999999886
No 177
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=6.9e-41 Score=352.48 Aligned_cols=260 Identities=23% Similarity=0.360 Sum_probs=191.0
Q ss_pred HhcCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccC-CCcccceeeeeecCC--e
Q 005864 400 ATKNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIR-HRNIVKFYGFCSHPR--H 475 (673)
Q Consensus 400 ~~~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~--~ 475 (673)
..++|++.+.||+|+||.||+|.+ .+|+.||||++..... .....+.+.+|+.++..+. ||||+++++++..++ .
T Consensus 7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~-~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~ 85 (388)
T 3oz6_A 7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQ-NSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRD 85 (388)
T ss_dssp HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--C-CHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSC
T ss_pred ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEeccccc-ChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCE
Confidence 457899999999999999999976 4799999999865432 2334677889999999997 999999999997544 6
Q ss_pred eeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEeccccee
Q 005864 476 SFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAK 555 (673)
Q Consensus 476 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~ 555 (673)
.++||||++ |+|.+++... .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 86 ~~lv~e~~~-~~L~~~~~~~----~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~ 157 (388)
T 3oz6_A 86 VYLVFDYME-TDLHAVIRAN----ILEPVHKQYVVYQLIKVIKYLHSG---GLLHRDMKPSNILLNAECHVKVADFGLSR 157 (388)
T ss_dssp EEEEEECCS-EEHHHHHHHT----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred EEEEecccC-cCHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHeEEcCCCCEEecCCcccc
Confidence 899999998 4999999763 478899999999999999999999 99999999999999999999999999998
Q ss_pred ecCCC---------------------CCCceeccccccccccccccc-CCcCcchhHHHHHHHHHHHHhCCCCCcccccc
Q 005864 556 FLKPG---------------------SSNWTEFAGTFGYVAPELAYT-MKVTEKCDVYSFGVLALEVIKGKHPRDFISLL 613 (673)
Q Consensus 556 ~~~~~---------------------~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~ 613 (673)
.+... ....+...||+.|+|||++.+ ..++.++||||+||++|||++|+.||......
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~ 237 (388)
T 3oz6_A 158 SFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTM 237 (388)
T ss_dssp ESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH
T ss_pred cccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCHH
Confidence 76431 112234579999999999876 67899999999999999999999999754322
Q ss_pred ccccccc-------ccccccccCC----------------CCCCCCcchH-------------HHHHHHHHHHHHcccCC
Q 005864 614 SSSSSNM-------NLSLNEILDP----------------RLPLPSRNIQ-------------DKLISILEVALLCLEES 657 (673)
Q Consensus 614 ~~~~~~~-------~~~~~~~~~~----------------~~~~~~~~~~-------------~~~~~l~~li~~cl~~d 657 (673)
....... ......+..+ .... ..... ..+.++.+++.+||+.|
T Consensus 238 ~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~d 316 (388)
T 3oz6_A 238 NQLERIIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNK-RDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFN 316 (388)
T ss_dssp HHHHHHHHHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----C-CCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSS
T ss_pred HHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCH-HHhCcchhhhcccccccccCCHHHHHHHHHhhccC
Confidence 1110000 0000000000 0000 00000 12346889999999999
Q ss_pred CCCCCCHHHHHH
Q 005864 658 PESRPTMQTVCQ 669 (673)
Q Consensus 658 p~~Rps~~~v~~ 669 (673)
|++|||++|+++
T Consensus 317 P~~R~t~~e~l~ 328 (388)
T 3oz6_A 317 PNKRISANDALK 328 (388)
T ss_dssp GGGSCCHHHHTT
T ss_pred cccCCCHHHHhC
Confidence 999999999975
No 178
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.4e-40 Score=340.00 Aligned_cols=251 Identities=26% Similarity=0.385 Sum_probs=201.9
Q ss_pred HhcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeE
Q 005864 400 ATKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFL 478 (673)
Q Consensus 400 ~~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 478 (673)
..+.|++.+.||+|+||.||+|... +|+.||+|.+.... ..+.+.+|+.++.+++||||+++++++..++..++
T Consensus 27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 101 (314)
T 3com_A 27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES-----DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWI 101 (314)
T ss_dssp ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS-----CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH-----HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEE
Confidence 3567999999999999999999775 59999999986532 24578899999999999999999999999999999
Q ss_pred EEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecC
Q 005864 479 VYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLK 558 (673)
Q Consensus 479 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~ 558 (673)
||||+++|+|.+++.... ..+++..+..++.|++.||.|||+. +++|+||||+||+++.++.+||+|||++....
T Consensus 102 v~e~~~~~~L~~~~~~~~--~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~ 176 (314)
T 3com_A 102 VMEYCGAGSVSDIIRLRN--KTLTEDEIATILQSTLKGLEYLHFM---RKIHRDIKAGNILLNTEGHAKLADFGVAGQLT 176 (314)
T ss_dssp EEECCTTEEHHHHHHHHT--CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECB
T ss_pred EeecCCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCcCHHHEEECCCCCEEEeecccchhhh
Confidence 999999999999997432 4588999999999999999999999 99999999999999999999999999998776
Q ss_pred CCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcc
Q 005864 559 PGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRN 638 (673)
Q Consensus 559 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (673)
..........|++.|+|||.+.+..++.++||||||+++|||++|+.||.......... .......+....
T Consensus 177 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~-----~~~~~~~~~~~~---- 247 (314)
T 3com_A 177 DTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIF-----MIPTNPPPTFRK---- 247 (314)
T ss_dssp TTBSCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHH-----HHHHSCCCCCSS----
T ss_pred hhccccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHHHHH-----HHhcCCCcccCC----
Confidence 54444455678999999999999899999999999999999999999987433221100 000001111111
Q ss_pred hHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 639 IQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 639 ~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
....+..+.+++.+||+.||.+|||+.|+++
T Consensus 248 ~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~ 278 (314)
T 3com_A 248 PELWSDNFTDFVKQCLVKSPEQRATATQLLQ 278 (314)
T ss_dssp GGGSCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred cccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence 1123446889999999999999999999975
No 179
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=100.00 E-value=2.5e-40 Score=335.51 Aligned_cols=254 Identities=22% Similarity=0.348 Sum_probs=207.4
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchh------hhhHHHHHHHHHHHHHhccC-CCcccceeeeeec
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLL------SEISVQREFLNEIKALTEIR-HRNIVKFYGFCSH 472 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~------~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~ 472 (673)
.++|++.+.||+|+||.||+|... +|+.||||++..... ......+.+.+|++++.+++ ||||+++++++..
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~ 95 (298)
T 1phk_A 16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET 95 (298)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeecc
Confidence 468999999999999999999775 689999999865421 11234567889999999995 9999999999999
Q ss_pred CCeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEeccc
Q 005864 473 PRHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFG 552 (673)
Q Consensus 473 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg 552 (673)
++..++||||+++++|.+++... ..+++..+..++.|++.||+|||+. +++||||||+||+++.++.+||+|||
T Consensus 96 ~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg 169 (298)
T 1phk_A 96 NTFFFLVFDLMKKGELFDYLTEK---VTLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLDDDMNIKLTDFG 169 (298)
T ss_dssp SSEEEEEEECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCT
T ss_pred CCeEEEEEeccCCCcHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEcCCCcEEEeccc
Confidence 99999999999999999999864 3588999999999999999999999 99999999999999999999999999
Q ss_pred ceeecCCCCCCceecccccccccccccc------cCCcCcchhHHHHHHHHHHHHhCCCCCccccccccccccccccccc
Q 005864 553 IAKFLKPGSSNWTEFAGTFGYVAPELAY------TMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNE 626 (673)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~------~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~ 626 (673)
++....... ......+++.|+|||.+. ...++.++||||||+++|||++|+.||....... ....
T Consensus 170 ~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~--------~~~~ 240 (298)
T 1phk_A 170 FSCQLDPGE-KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQML--------MLRM 240 (298)
T ss_dssp TCEECCTTC-CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH--------HHHH
T ss_pred chhhcCCCc-ccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccHHH--------HHHH
Confidence 998775432 334567899999999875 4568899999999999999999999986432211 1111
Q ss_pred ccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 627 ILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
+.......+.......+..+.+++.+||+.||++|||+.|+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (298)
T 1phk_A 241 IMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA 283 (298)
T ss_dssp HHHTCCCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred HhcCCcccCcccccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence 2222222222223344567999999999999999999999975
No 180
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=100.00 E-value=8.5e-41 Score=345.91 Aligned_cols=261 Identities=19% Similarity=0.225 Sum_probs=196.8
Q ss_pred cCCCccceeccCCcEEEEEEEeC----CCCEEEEEeeccchhhhhH--------HHHHHHHHHHHHhccCCCcccceeee
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP----SGEVVAVKKFHSLLLSEIS--------VQREFLNEIKALTEIRHRNIVKFYGF 469 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~----~~~~vavK~~~~~~~~~~~--------~~~~~~~e~~~l~~l~h~niv~l~~~ 469 (673)
++|.+.+.||+|+||+||+|... ++..||+|++......... ....+.+|+..+..++||||++++++
T Consensus 37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~ 116 (345)
T 2v62_A 37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS 116 (345)
T ss_dssp CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence 57899999999999999999875 5788999998754321111 12346788999999999999999999
Q ss_pred eec----CCeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCC-
Q 005864 470 CSH----PRHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEY- 544 (673)
Q Consensus 470 ~~~----~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~- 544 (673)
+.. ....++||||+ +++|.+++...+ .+++..+..++.||+.||+|||+. +|+||||||+||+++.++
T Consensus 117 ~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~ 189 (345)
T 2v62_A 117 GLTEFKGRSYRFMVMERL-GIDLQKISGQNG---TFKKSTVLQLGIRMLDVLEYIHEN---EYVHGDIKAANLLLGYKNP 189 (345)
T ss_dssp EEEESSSCEEEEEEEECE-EEEHHHHCBGGG---BCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEESSST
T ss_pred cccccCCCcEEEEEEecc-CCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCcCHHHEEEccCCC
Confidence 987 67889999999 999999998653 689999999999999999999999 999999999999999887
Q ss_pred -ceEEecccceeecCCCCC-------CceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCccccccccc
Q 005864 545 -EARVSDFGIAKFLKPGSS-------NWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSS 616 (673)
Q Consensus 545 -~~kl~Dfg~~~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~ 616 (673)
.+||+|||+++.+..... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.........
T Consensus 190 ~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~ 269 (345)
T 2v62_A 190 DQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVA 269 (345)
T ss_dssp TSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHH
T ss_pred CcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHH
Confidence 999999999987643221 123457899999999999999999999999999999999999999632110000
Q ss_pred ccccccccccccCCCCCCCC-c--chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhhC
Q 005864 617 SSNMNLSLNEILDPRLPLPS-R--NIQDKLISILEVALLCLEESPESRPTMQTVCQLLCK 673 (673)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~~ 673 (673)
. ..........++... . .....+.++.+++.+||+.||++|||++++++.|++
T Consensus 270 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~ 325 (345)
T 2v62_A 270 V----QTAKTNLLDELPQSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNP 325 (345)
T ss_dssp H----HHHHHHHHHTTTHHHHHHSCTTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCT
T ss_pred H----HHHHHhhcccccHHHHhhccccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhc
Confidence 0 000000000111000 0 000223468999999999999999999999999864
No 181
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=100.00 E-value=2.1e-40 Score=334.44 Aligned_cols=248 Identities=21% Similarity=0.302 Sum_probs=200.1
Q ss_pred HhcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhcc-CCCcccceeeeeecCCeee
Q 005864 400 ATKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEI-RHRNIVKFYGFCSHPRHSF 477 (673)
Q Consensus 400 ~~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~ 477 (673)
..++|++.+.||+|+||+||+|... +++.||+|++....... .....+.+|+..+..+ +||||+++++++.+++..+
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~ 87 (289)
T 1x8b_A 9 YTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGS-VDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHML 87 (289)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTS-HHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEE
T ss_pred ccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEeccccccc-HHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEE
Confidence 3467999999999999999999775 79999999987643332 3456788999999999 9999999999999999999
Q ss_pred EEEecccCCChHHHHhcCCC-CccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCC-------------
Q 005864 478 LVYECLERGSLAEILSNDGS-IKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSE------------- 543 (673)
Q Consensus 478 lv~e~~~~gsL~~~l~~~~~-~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~------------- 543 (673)
+||||+++|+|.+++..... ...+++..+..++.|++.||+|||++ +|+||||||+||+++.+
T Consensus 88 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~ 164 (289)
T 1x8b_A 88 IQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSM---SLVHMDIKPSNIFISRTSIPNAASEEGDED 164 (289)
T ss_dssp EEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC---------------
T ss_pred EEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeecCCCHHHEEEcCCCCCcccccccccc
Confidence 99999999999999976421 13488999999999999999999999 99999999999999844
Q ss_pred ------CceEEecccceeecCCCCCCceecccccccccccccccC-CcCcchhHHHHHHHHHHHHhCCCCCccccccccc
Q 005864 544 ------YEARVSDFGIAKFLKPGSSNWTEFAGTFGYVAPELAYTM-KVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSS 616 (673)
Q Consensus 544 ------~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~ 616 (673)
..+||+|||.+....... ...|++.|+|||.+.+. .++.++||||||+++|||++|..|+......
T Consensus 165 ~~~~~~~~~kl~Dfg~~~~~~~~~----~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~--- 237 (289)
T 1x8b_A 165 DWASNKVMFKIGDLGHVTRISSPQ----VEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGDQW--- 237 (289)
T ss_dssp -----CCCEEECCCTTCEETTCSC----CCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSSHHH---
T ss_pred cccCCceEEEEcccccccccCCcc----ccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcchhHH---
Confidence 479999999998765432 24589999999998765 5668999999999999999999876432211
Q ss_pred ccccccccccccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 617 SSNMNLSLNEILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
..+.....+.... ..+.++.+++.+||+.||++|||+.|+++
T Consensus 238 --------~~~~~~~~~~~~~---~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 279 (289)
T 1x8b_A 238 --------HEIRQGRLPRIPQ---VLSQEFTELLKVMIHPDPERRPSAMALVK 279 (289)
T ss_dssp --------HHHHTTCCCCCSS---CCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred --------HHHHcCCCCCCCc---ccCHHHHHHHHHHhCCCcccCCCHHHHhh
Confidence 1111122211111 12345889999999999999999999985
No 182
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=100.00 E-value=2.1e-40 Score=335.81 Aligned_cols=256 Identities=18% Similarity=0.258 Sum_probs=202.3
Q ss_pred hcCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeee-ecCCeeeE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFC-SHPRHSFL 478 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~-~~~~~~~l 478 (673)
.++|++.+.||+|+||+||+|+. .+|+.||||++..... .+.+.+|+.++..++|+++++.++++ ..++..++
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~l 82 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK-----HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVM 82 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS-----CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc-----hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEE
Confidence 46799999999999999999976 5799999998765422 24578999999999988877776665 56677899
Q ss_pred EEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeC---CCCceEEeccccee
Q 005864 479 VYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLS---SEYEARVSDFGIAK 555 (673)
Q Consensus 479 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~---~~~~~kl~Dfg~~~ 555 (673)
||||+ +++|.+++.... ..+++..+..++.|++.||+|||++ +|+||||||+||+++ .++.+||+|||++.
T Consensus 83 v~e~~-~~~L~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~ 156 (296)
T 3uzp_A 83 VMELL-GPSLEDLFNFCS--RKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAK 156 (296)
T ss_dssp EEECC-CCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCCTTCE
T ss_pred EEEec-CCCHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHeEEecCCCCCeEEEeeCCCcc
Confidence 99999 899999998543 4589999999999999999999999 999999999999994 78899999999998
Q ss_pred ecCCCCC-------CceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCccccccccccccccccccccc
Q 005864 556 FLKPGSS-------NWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEIL 628 (673)
Q Consensus 556 ~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~ 628 (673)
....... ......||+.|+|||.+.+..++.++||||||+++|||++|+.||........ ......+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-----~~~~~~~~ 231 (296)
T 3uzp_A 157 KYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATK-----RQKYERIS 231 (296)
T ss_dssp ECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSS-----SSHHHHHH
T ss_pred cccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhh-----hhhhhhhc
Confidence 7754432 12446789999999999999999999999999999999999999975322111 00111111
Q ss_pred CCCCCCCC-cchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 629 DPRLPLPS-RNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 629 ~~~~~~~~-~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
......+. ......+.++.+++.+||+.||++|||++++++.|+
T Consensus 232 ~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~ 276 (296)
T 3uzp_A 232 EKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFR 276 (296)
T ss_dssp HHHHHSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHH
T ss_pred ccccCCchHHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHH
Confidence 11111110 000122346899999999999999999999999986
No 183
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=100.00 E-value=3.2e-41 Score=346.68 Aligned_cols=262 Identities=20% Similarity=0.272 Sum_probs=193.8
Q ss_pred HhcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeE
Q 005864 400 ATKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFL 478 (673)
Q Consensus 400 ~~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 478 (673)
..++|++.+.||+|+||+||+|... +|+.||||++..... .....+.+.+|+.++++++||||+++++++.+++..++
T Consensus 32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 110 (329)
T 3gbz_A 32 SIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHE-EEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHL 110 (329)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC---------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEE
T ss_pred chhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEccccc-ccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEE
Confidence 3568999999999999999999754 789999999875432 22345677899999999999999999999999999999
Q ss_pred EEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeC-----CCCceEEecccc
Q 005864 479 VYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLS-----SEYEARVSDFGI 553 (673)
Q Consensus 479 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~-----~~~~~kl~Dfg~ 553 (673)
||||+++ +|.+++.... .+++..+..++.|++.||+|||+. +|+||||||+||+++ +++.+||+|||+
T Consensus 111 v~e~~~~-~L~~~~~~~~---~~~~~~~~~i~~ql~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~ 183 (329)
T 3gbz_A 111 IFEYAEN-DLKKYMDKNP---DVSMRVIKSFLYQLINGVNFCHSR---RCLHRDLKPQNLLLSVSDASETPVLKIGDFGL 183 (329)
T ss_dssp EEECCSE-EHHHHHHHCT---TCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEC-----CCEEEECCTTH
T ss_pred EEecCCC-CHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CEECCCCCHHHEEEecCCCCccceEEECcCCC
Confidence 9999985 9999998764 488999999999999999999999 999999999999994 455699999999
Q ss_pred eeecCCCCCCceecccccccccccccccC-CcCcchhHHHHHHHHHHHHhCCCCCccccccccccccc-------ccccc
Q 005864 554 AKFLKPGSSNWTEFAGTFGYVAPELAYTM-KVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNM-------NLSLN 625 (673)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~-------~~~~~ 625 (673)
+..............+|+.|+|||++.+. .++.++||||+||++|||++|+.||......+...... ...+.
T Consensus 184 a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (329)
T 3gbz_A 184 ARAFGIPIRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFKIFEVLGLPDDTTWP 263 (329)
T ss_dssp HHHHC-----------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTST
T ss_pred ccccCCcccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHHHHHHHHHhCCCchhhhh
Confidence 98775544445556789999999998874 48999999999999999999999997433221100000 00000
Q ss_pred ---c--ccCCCCCC-CCcchH-----HHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 626 ---E--ILDPRLPL-PSRNIQ-----DKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 626 ---~--~~~~~~~~-~~~~~~-----~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
. ......+. ...... ..+.++.+++.+||+.||++|||++|+++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 318 (329)
T 3gbz_A 264 GVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE 318 (329)
T ss_dssp TGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred hhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence 0 00000000 000111 12356889999999999999999999986
No 184
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=100.00 E-value=1.1e-39 Score=332.08 Aligned_cols=252 Identities=21% Similarity=0.291 Sum_probs=200.6
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhh-hHHHHHHHHHHHHHhccCCCcccceeeeee--cCCee
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSE-ISVQREFLNEIKALTEIRHRNIVKFYGFCS--HPRHS 476 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~--~~~~~ 476 (673)
.++|++.+.||+|+||.||+|... +++.||+|++....... ....+.+.+|+.++++++||||+++++++. +.+..
T Consensus 4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 83 (305)
T 2wtk_C 4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM 83 (305)
T ss_dssp -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence 468999999999999999999874 68999999987653322 334678999999999999999999999984 45678
Q ss_pred eEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceee
Q 005864 477 FLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKF 556 (673)
Q Consensus 477 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~ 556 (673)
++||||++++ |.+++..... ..+++..+..++.|++.||+|||++ +++||||||+||+++.++.+||+|||++..
T Consensus 84 ~lv~e~~~~~-l~~~~~~~~~-~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~ 158 (305)
T 2wtk_C 84 YMVMEYCVCG-MQEMLDSVPE-KRFPVCQAHGYFCQLIDGLEYLHSQ---GIVHKDIKPGNLLLTTGGTLKISALGVAEA 158 (305)
T ss_dssp EEEEECCSEE-HHHHHHHSTT-CSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEehhccCC-HHHHHHhCcc-cccCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEcCCCcEEeeccccccc
Confidence 9999999986 7777766432 4689999999999999999999999 999999999999999999999999999987
Q ss_pred cCCCCC--CceecccccccccccccccCC--cCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCC
Q 005864 557 LKPGSS--NWTEFAGTFGYVAPELAYTMK--VTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRL 632 (673)
Q Consensus 557 ~~~~~~--~~~~~~~~~~y~aPE~~~~~~--~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (673)
...... ......|++.|+|||.+.+.. ++.++||||||+++|||++|+.||......+ ....+.....
T Consensus 159 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~--------~~~~i~~~~~ 230 (305)
T 2wtk_C 159 LHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIYK--------LFENIGKGSY 230 (305)
T ss_dssp CCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSHHH--------HHHHHHHCCC
T ss_pred cCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchHHH--------HHHHHhcCCC
Confidence 654322 223456899999999987644 4779999999999999999999997432211 1111112222
Q ss_pred CCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 633 PLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 633 ~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
..+.. .+..+.+++.+||+.||++|||++|+++
T Consensus 231 ~~~~~----~~~~l~~li~~~l~~dp~~Rps~~~ll~ 263 (305)
T 2wtk_C 231 AIPGD----CGPPLSDLLKGMLEYEPAKRFSIRQIRQ 263 (305)
T ss_dssp CCCSS----SCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred CCCCc----cCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 22222 2345889999999999999999999986
No 185
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=100.00 E-value=2.7e-40 Score=339.83 Aligned_cols=253 Identities=23% Similarity=0.390 Sum_probs=200.8
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEE--EEEeeccchhhhhHHHHHHHHHHHHHhcc-CCCcccceeeeeecCCeee
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVV--AVKKFHSLLLSEISVQREFLNEIKALTEI-RHRNIVKFYGFCSHPRHSF 477 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~v--avK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~ 477 (673)
++|++.+.||+|+||.||+|+.. +|..+ |+|.++... .....+.+.+|++++.++ +||||+++++++.+++..+
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~--~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~ 102 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYA--SKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLY 102 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC--------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEE
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeecccc--chHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceE
Confidence 57899999999999999999764 56644 999886532 233456789999999999 8999999999999999999
Q ss_pred EEEecccCCChHHHHhcCC-------------CCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCC
Q 005864 478 LVYECLERGSLAEILSNDG-------------SIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEY 544 (673)
Q Consensus 478 lv~e~~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~ 544 (673)
+||||+++|+|.+++...+ ....+++..++.++.|+++||+|||+. +|+||||||+||+++.++
T Consensus 103 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~ 179 (327)
T 1fvr_A 103 LAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENY 179 (327)
T ss_dssp EEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGG
T ss_pred EEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCccceEEEcCCC
Confidence 9999999999999998653 124589999999999999999999999 999999999999999999
Q ss_pred ceEEecccceeecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccccccc
Q 005864 545 EARVSDFGIAKFLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLS 623 (673)
Q Consensus 545 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~ 623 (673)
.+||+|||+++..... .......+++.|+|||.+.+..++.++||||||+++|||++ |+.||......+.
T Consensus 180 ~~kL~Dfg~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~-------- 250 (327)
T 1fvr_A 180 VAKIADFGLSRGQEVY-VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAEL-------- 250 (327)
T ss_dssp CEEECCTTCEESSCEE-CCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHH--------
T ss_pred eEEEcccCcCcccccc-ccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHHHH--------
Confidence 9999999999743221 12233456789999999988889999999999999999998 9999874332111
Q ss_pred cccccCC-CCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 624 LNEILDP-RLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 624 ~~~~~~~-~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
...+... ....+. ..+..+.+++.+||+.||++|||++|+++.|+
T Consensus 251 ~~~~~~~~~~~~~~----~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~ 296 (327)
T 1fvr_A 251 YEKLPQGYRLEKPL----NCDDEVYDLMRQCWREKPYERPSFAQILVSLN 296 (327)
T ss_dssp HHHGGGTCCCCCCT----TBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred HHHhhcCCCCCCCC----CCCHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence 1111111 111111 22345889999999999999999999999885
No 186
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=100.00 E-value=4.8e-41 Score=367.09 Aligned_cols=252 Identities=25% Similarity=0.431 Sum_probs=205.3
Q ss_pred hcCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
.++|++.+.||+|+||+||+|.+.++..||||+++.... ..+.|.+|+++|++++||||+++++++.+ +..++||
T Consensus 266 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~ 340 (535)
T 2h8h_A 266 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM----SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVT 340 (535)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSS----CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEE
T ss_pred hhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCC----CHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEee
Confidence 467888999999999999999998888999999875432 24678999999999999999999999876 6789999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
||+++|+|.++++... ...+++.++..++.||++||+|||++ +|+||||||+|||+++++.+||+|||+++.....
T Consensus 341 e~~~~gsL~~~l~~~~-~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~ 416 (535)
T 2h8h_A 341 EYMSKGSLLDFLKGET-GKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDN 416 (535)
T ss_dssp CCCTTEEHHHHHSHHH-HTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCH
T ss_pred ehhcCCcHHHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEEcCCCcEEEcccccceecCCC
Confidence 9999999999997532 13478999999999999999999999 9999999999999999999999999999765422
Q ss_pred CC-CceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccccccccccccCC-CCCCCCc
Q 005864 561 SS-NWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLSLNEILDP-RLPLPSR 637 (673)
Q Consensus 561 ~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 637 (673)
.. ......++..|+|||.+.+..++.++|||||||++|||++ |+.||......+. ...+... +++.+.
T Consensus 417 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~~--------~~~i~~~~~~~~~~- 487 (535)
T 2h8h_A 417 EYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREV--------LDQVERGYRMPCPP- 487 (535)
T ss_dssp HHHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHHH--------HHHHHTTCCCCCCT-
T ss_pred ceecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHH--------HHHHHcCCCCCCCC-
Confidence 11 1123446788999999998899999999999999999999 9999874322111 1111111 122222
Q ss_pred chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhhC
Q 005864 638 NIQDKLISILEVALLCLEESPESRPTMQTVCQLLCK 673 (673)
Q Consensus 638 ~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~~ 673 (673)
..+..+.+++.+||+.||++|||++++++.|++
T Consensus 488 ---~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~ 520 (535)
T 2h8h_A 488 ---ECPESLHDLMCQCWRKEPEERPTFEYLQAFLED 520 (535)
T ss_dssp ---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred ---CCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHH
Confidence 233458899999999999999999999999864
No 187
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=100.00 E-value=1.7e-40 Score=341.29 Aligned_cols=255 Identities=25% Similarity=0.385 Sum_probs=201.7
Q ss_pred hcCCCccceeccCCcEEEEEEEe------CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCC
Q 005864 401 TKNFDAEQCIGIGGQASVYRGEL------PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPR 474 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~ 474 (673)
.++|++.+.||+|+||.||+|++ .+++.||||.+.... .......+.+|+.++++++||||+++++++..++
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~ 106 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVC--SEQDELDFLMEALIISKFNHQNIVRCIGVSLQSL 106 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSC--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEecccc--chhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCC
Confidence 36799999999999999999974 357799999986432 2334567899999999999999999999999999
Q ss_pred eeeEEEecccCCChHHHHhcCCC----CccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCC---CCceE
Q 005864 475 HSFLVYECLERGSLAEILSNDGS----IKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSS---EYEAR 547 (673)
Q Consensus 475 ~~~lv~e~~~~gsL~~~l~~~~~----~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~---~~~~k 547 (673)
..++||||+++|+|.+++..... ...+++..++.++.|++.||.|||+. +|+||||||+||+++. +..+|
T Consensus 107 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~i~H~dlkp~NIli~~~~~~~~~k 183 (327)
T 2yfx_A 107 PRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAK 183 (327)
T ss_dssp SCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEE
T ss_pred CcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeecCcCCHhHEEEecCCCcceEE
Confidence 99999999999999999987542 13488999999999999999999999 9999999999999984 44699
Q ss_pred EecccceeecCCCCC--CceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCccccccccccccccccc
Q 005864 548 VSDFGIAKFLKPGSS--NWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLSL 624 (673)
Q Consensus 548 l~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~ 624 (673)
|+|||++........ ......+++.|+|||.+.+..++.++||||||+++|||++ |+.||......+ ..
T Consensus 184 l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~--------~~ 255 (327)
T 2yfx_A 184 IGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQE--------VL 255 (327)
T ss_dssp ECCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH--------HH
T ss_pred ECccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHHH--------HH
Confidence 999999976533221 2234567889999999998899999999999999999998 999987432211 11
Q ss_pred ccccCC-CCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 625 NEILDP-RLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 625 ~~~~~~-~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
..+... ....+. ..+..+.+++.+||+.||.+|||+.|+++.|+
T Consensus 256 ~~~~~~~~~~~~~----~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~ 300 (327)
T 2yfx_A 256 EFVTSGGRMDPPK----NCPGPVYRIMTQCWQHQPEDRPNFAIILERIE 300 (327)
T ss_dssp HHHHTTCCCCCCT----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred HHHhcCCCCCCCC----CCCHHHHHHHHHHhcCChhhCcCHHHHHHHHH
Confidence 111111 111111 22345889999999999999999999999875
No 188
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=100.00 E-value=1.2e-40 Score=345.82 Aligned_cols=254 Identities=22% Similarity=0.347 Sum_probs=204.6
Q ss_pred cCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhH--------------HHHHHHHHHHHHhccCCCccccee
Q 005864 402 KNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEIS--------------VQREFLNEIKALTEIRHRNIVKFY 467 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~--------------~~~~~~~e~~~l~~l~h~niv~l~ 467 (673)
++|.+.+.||+|+||.||+|.. +|+.||||++......... ..+.+.+|+.++.+++||||++++
T Consensus 31 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~ 109 (348)
T 2pml_X 31 NDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCE 109 (348)
T ss_dssp TTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCCS
T ss_pred CceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceEE
Confidence 5789999999999999999988 9999999998764332211 127899999999999999999999
Q ss_pred eeeecCCeeeEEEecccCCChHHH------HhcCCCCccchHHHHHHHHHHHHHHHHHHhh-cCCCCeEEecCCCCCeEe
Q 005864 468 GFCSHPRHSFLVYECLERGSLAEI------LSNDGSIKEFSWIVRTNVIKSVANALSYMHH-DCFPPIVHRDISSKNVLL 540 (673)
Q Consensus 468 ~~~~~~~~~~lv~e~~~~gsL~~~------l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~-~~~~~ivH~dlk~~Nill 540 (673)
+++.+++..++||||+++|+|.++ +.... ...+++..+..++.|++.||+|||+ . +++||||||+||++
T Consensus 110 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~---~i~H~dl~p~Nil~ 185 (348)
T 2pml_X 110 GIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNY-TCFIPIQVIKCIIKSVLNSFSYIHNEK---NICHRDVKPSNILM 185 (348)
T ss_dssp EEEESSSEEEEEEECCTTCBSSEESSSEESSCSSS-CCCCCHHHHHHHHHHHHHHHHHHHHTS---CEECCCCCGGGEEE
T ss_pred EEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhcc-ccCCCHHHHHHHHHHHHHHHHHHhccC---CEeecCCChHhEEE
Confidence 999999999999999999999998 55421 2568999999999999999999999 8 99999999999999
Q ss_pred CCCCceEEecccceeecCCCCCCceecccccccccccccccC-CcCc-chhHHHHHHHHHHHHhCCCCCccccccccccc
Q 005864 541 SSEYEARVSDFGIAKFLKPGSSNWTEFAGTFGYVAPELAYTM-KVTE-KCDVYSFGVLALEVIKGKHPRDFISLLSSSSS 618 (673)
Q Consensus 541 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~-~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~ 618 (673)
+.++.+||+|||.+...... ......|++.|+|||.+.+. .++. ++||||||+++|||++|+.||........
T Consensus 186 ~~~~~~kl~dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~--- 260 (348)
T 2pml_X 186 DKNGRVKLSDFGESEYMVDK--KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVE--- 260 (348)
T ss_dssp CTTSCEEECCCTTCEECBTT--EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSHH---
T ss_pred cCCCcEEEeccccccccccc--cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHHH---
Confidence 99999999999999876433 33456789999999999877 6666 99999999999999999999974322100
Q ss_pred ccccccccccCCCCCCCC---------------cchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 619 NMNLSLNEILDPRLPLPS---------------RNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
....+.......+. ......+.++.+++.+||+.||.+|||+.|+++
T Consensus 261 ----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~ 322 (348)
T 2pml_X 261 ----LFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK 322 (348)
T ss_dssp ----HHHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred ----HHHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 01111111111110 001223456899999999999999999999986
No 189
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=100.00 E-value=5e-41 Score=345.80 Aligned_cols=261 Identities=24% Similarity=0.371 Sum_probs=200.0
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
++|++.+.||+|+||.||+|+.. +|+.||||++.... ......+.+.+|+.++.+++||||+++++++.+.+..++||
T Consensus 25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 103 (331)
T 4aaa_A 25 EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESD-DDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVF 103 (331)
T ss_dssp GGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCS-SCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCC-CchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEE
Confidence 57889999999999999999775 59999999986543 23334567889999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
||+++++|.++..... .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++......
T Consensus 104 e~~~~~~l~~~~~~~~---~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 177 (331)
T 4aaa_A 104 EFVDHTILDDLELFPN---GLDYQVVQKYLFQIINGIGFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLAAP 177 (331)
T ss_dssp ECCSEEHHHHHHHSTT---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCTTC------
T ss_pred ecCCcchHHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHC---CEEccCcChheEEEcCCCcEEEEeCCCceeecCC
Confidence 9999999998876543 488999999999999999999999 9999999999999999999999999999876554
Q ss_pred CCCceecccccccccccccccC-CcCcchhHHHHHHHHHHHHhCCCCCccccccccccccc----------------ccc
Q 005864 561 SSNWTEFAGTFGYVAPELAYTM-KVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNM----------------NLS 623 (673)
Q Consensus 561 ~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~----------------~~~ 623 (673)
........|++.|+|||.+.+. .++.++||||+|+++|||++|+.||......+...... ...
T Consensus 178 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (331)
T 4aaa_A 178 GEVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPV 257 (331)
T ss_dssp ------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHCGG
T ss_pred ccccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhhccc
Confidence 4444556789999999998775 68999999999999999999999997443221100000 000
Q ss_pred cccccCCCCCCCCc---chHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 624 LNEILDPRLPLPSR---NIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 624 ~~~~~~~~~~~~~~---~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
......+....... .....+..+.+++.+||+.||++|||++|+++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 306 (331)
T 4aaa_A 258 FAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLH 306 (331)
T ss_dssp GTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred cccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhc
Confidence 00001111111000 11123456999999999999999999999875
No 190
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=100.00 E-value=1.3e-40 Score=333.95 Aligned_cols=247 Identities=28% Similarity=0.411 Sum_probs=195.6
Q ss_pred hcCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecC-CeeeEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHP-RHSFLV 479 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-~~~~lv 479 (673)
.++|++.+.||+|+||+||+|+. .|+.||||.++... ..+.+.+|++++.+++||||+++++++.+. +..++|
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~-----~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv 93 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA-----TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIV 93 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC-------HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEE
T ss_pred hhhceEEeEEecCCCceEEEEEE-cCCEEEEEEecchh-----HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEE
Confidence 46789999999999999999987 48899999986532 356789999999999999999999997654 578999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCC
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKP 559 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~ 559 (673)
|||+++|+|.+++...+ ...+++..+..++.|+++||+|||+. +++||||||+||+++.++.+||+|||++.....
T Consensus 94 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~ 169 (278)
T 1byg_A 94 TEYMAKGSLVDYLRSRG-RSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASS 169 (278)
T ss_dssp ECCCTTEEHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC------
T ss_pred EecCCCCCHHHHHHhcc-cccCCHHHHHHHHHHHHHHHHHHHhC---CccccCCCcceEEEeCCCcEEEeeccccccccc
Confidence 99999999999997643 12378899999999999999999999 999999999999999999999999999976533
Q ss_pred CCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccccccccccccCC-CCCCCCc
Q 005864 560 GSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLSLNEILDP-RLPLPSR 637 (673)
Q Consensus 560 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 637 (673)
. .....+++.|+|||.+.+..++.++||||||+++|||++ |+.||......+. ...+... ....+
T Consensus 170 ~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~--------~~~~~~~~~~~~~-- 236 (278)
T 1byg_A 170 T---QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDV--------VPRVEKGYKMDAP-- 236 (278)
T ss_dssp ---------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGH--------HHHHTTTCCCCCC--
T ss_pred c---ccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHH--------HHHHhcCCCCCCc--
Confidence 2 223457889999999998899999999999999999998 9999874322111 1111111 11111
Q ss_pred chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 638 NIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 638 ~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
...+..+.+++.+||+.||++|||+.|+++.|+
T Consensus 237 --~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~ 269 (278)
T 1byg_A 237 --DGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLE 269 (278)
T ss_dssp --TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred --ccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHH
Confidence 123446889999999999999999999999886
No 191
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=100.00 E-value=4.5e-40 Score=336.77 Aligned_cols=257 Identities=21% Similarity=0.297 Sum_probs=200.8
Q ss_pred hcCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeee----cCCe
Q 005864 401 TKNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCS----HPRH 475 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~----~~~~ 475 (673)
.++|++.+.||+|+||.||+|.. .+|+.||||++... .....+.+.+|+++++.++||||+++++++. ....
T Consensus 28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 104 (317)
T 2buj_A 28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCH---EQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHE 104 (317)
T ss_dssp TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEES---SHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEE
T ss_pred CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecC---CHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCce
Confidence 36799999999999999999976 57999999988653 2334678899999999999999999999986 3457
Q ss_pred eeEEEecccCCChHHHHhcCC-CCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccce
Q 005864 476 SFLVYECLERGSLAEILSNDG-SIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIA 554 (673)
Q Consensus 476 ~~lv~e~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~ 554 (673)
.++|+||+++|+|.+++.... ....+++..++.++.|+++||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 105 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~dfg~~ 181 (317)
T 2buj_A 105 AWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAK---GYAHRDLKPTNILLGDEGQPVLMDLGSM 181 (317)
T ss_dssp EEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCSSC
T ss_pred eEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCCEEEEecCcc
Confidence 889999999999999997631 124689999999999999999999999 9999999999999999999999999998
Q ss_pred eecCCCCCC---------ceecccccccccccccccCC---cCcchhHHHHHHHHHHHHhCCCCCccccccccccccccc
Q 005864 555 KFLKPGSSN---------WTEFAGTFGYVAPELAYTMK---VTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNL 622 (673)
Q Consensus 555 ~~~~~~~~~---------~~~~~~~~~y~aPE~~~~~~---~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~ 622 (673)
......... .....|++.|+|||.+.+.. ++.++||||||+++|||++|+.||+........ ...
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~---~~~ 258 (317)
T 2buj_A 182 NQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDS---VAL 258 (317)
T ss_dssp EESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSC---HHH
T ss_pred hhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccch---hhH
Confidence 765321111 12245689999999987544 688999999999999999999998643211100 000
Q ss_pred ccccccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 623 SLNEILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
.... ....+.. ...+..+.+++.+||+.||.+|||++|+++.|+
T Consensus 259 ~~~~--~~~~~~~----~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~ 302 (317)
T 2buj_A 259 AVQN--QLSIPQS----PRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLE 302 (317)
T ss_dssp HHHC--C--CCCC----TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred Hhhc--cCCCCcc----ccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhh
Confidence 0000 0111111 122346899999999999999999999999985
No 192
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2e-40 Score=345.32 Aligned_cols=256 Identities=20% Similarity=0.290 Sum_probs=195.0
Q ss_pred cCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCC------
Q 005864 402 KNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPR------ 474 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~------ 474 (673)
++|++.+.||+|+||.||+|.. .+|+.||||++..... .....+.+.+|+.+++.++||||+++++++..++
T Consensus 25 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 103 (367)
T 1cm8_A 25 AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQ-SELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT 103 (367)
T ss_dssp SSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTS-SHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred ceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCcccc-CHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence 5788999999999999999976 4799999999865432 3344677899999999999999999999997653
Q ss_pred eeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccce
Q 005864 475 HSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIA 554 (673)
Q Consensus 475 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~ 554 (673)
..++||||+ +++|.+++... .+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 104 ~~~lv~e~~-~~~L~~~~~~~----~l~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a 175 (367)
T 1cm8_A 104 DFYLVMPFM-GTDLGKLMKHE----KLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILDFGLA 175 (367)
T ss_dssp CCEEEEECC-SEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred eEEEEEecC-CCCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCHHHEEEcCCCCEEEEeeecc
Confidence 459999999 78999999763 478899999999999999999999 9999999999999999999999999999
Q ss_pred eecCCCCCCceeccccccccccccccc-CCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccc-------cccccc-
Q 005864 555 KFLKPGSSNWTEFAGTFGYVAPELAYT-MKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSN-------MNLSLN- 625 (673)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~-------~~~~~~- 625 (673)
+..... .....+|+.|+|||.+.+ ..++.++||||+||++|||++|+.||......+..... ......
T Consensus 176 ~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~ 252 (367)
T 1cm8_A 176 RQADSE---MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQR 252 (367)
T ss_dssp EECCSS---CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHT
T ss_pred cccccc---cCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHH
Confidence 876432 344678999999999877 67999999999999999999999999754322110000 000000
Q ss_pred -------cccC--CCCCCC--CcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 626 -------EILD--PRLPLP--SRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 626 -------~~~~--~~~~~~--~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
..+. +..... .......+..+.+++.+||+.||++|||++|+++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~ 307 (367)
T 1cm8_A 253 LQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALA 307 (367)
T ss_dssp CSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred hhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhc
Confidence 0000 000000 0011123456889999999999999999999986
No 193
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=100.00 E-value=5.9e-40 Score=349.62 Aligned_cols=200 Identities=22% Similarity=0.361 Sum_probs=169.2
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecC-----C
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHP-----R 474 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-----~ 474 (673)
.++|++.+.||+|+||.||+|.+. +|+.||||++.... ......+.+.+|+.+++.++||||+++++++... +
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 103 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMF-EDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFD 103 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTT-TSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchh-cChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCC
Confidence 357999999999999999999764 68899999997543 2334567899999999999999999999999765 5
Q ss_pred eeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccce
Q 005864 475 HSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIA 554 (673)
Q Consensus 475 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~ 554 (673)
..++||||+++ +|.+++... ..+++..+..++.||++||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 104 ~~~lv~e~~~~-~L~~~~~~~---~~l~~~~~~~i~~qil~aL~~LH~~---givHrDlkp~NILl~~~~~~kL~DFGla 176 (432)
T 3n9x_A 104 ELYIVLEIADS-DLKKLFKTP---IFLTEEHIKTILYNLLLGENFIHES---GIIHRDLKPANCLLNQDCSVKVCDFGLA 176 (432)
T ss_dssp CEEEEEECCSE-EHHHHHHSS---CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred eEEEEEecCCc-CHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHeEECCCCCEEEccCCCc
Confidence 68999999875 999999865 3589999999999999999999999 9999999999999999999999999999
Q ss_pred eecCCCCC----------------------Cceeccccccccccccc-ccCCcCcchhHHHHHHHHHHHHhCCCCCc
Q 005864 555 KFLKPGSS----------------------NWTEFAGTFGYVAPELA-YTMKVTEKCDVYSFGVLALEVIKGKHPRD 608 (673)
Q Consensus 555 ~~~~~~~~----------------------~~~~~~~~~~y~aPE~~-~~~~~~~~~Dv~slG~il~el~~g~~p~~ 608 (673)
+....... ......||+.|+|||++ ....++.++||||+||++|||++|..||.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~ 253 (432)
T 3n9x_A 177 RTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHI 253 (432)
T ss_dssp EEC-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTC
T ss_pred ccccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcccccc
Confidence 97654321 23556789999999986 56679999999999999999999766654
No 194
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.2e-40 Score=366.91 Aligned_cols=244 Identities=25% Similarity=0.361 Sum_probs=196.0
Q ss_pred eeccCCcEEEEEEEeC---CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEEecccC
Q 005864 409 CIGIGGQASVYRGELP---SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVYECLER 485 (673)
Q Consensus 409 ~ig~G~~g~vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~ 485 (673)
.||+|+||+||+|.+. ++..||||+++... .....+++.+|++++++++|||||++++++.. +..++||||+++
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~--~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E~~~~ 419 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT--EKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGG 419 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCCC--SSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCC--ChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEEeCCC
Confidence 7999999999999763 46679999997642 22346789999999999999999999999976 568999999999
Q ss_pred CChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCCCCCc-
Q 005864 486 GSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPGSSNW- 564 (673)
Q Consensus 486 gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~- 564 (673)
|+|.+++.... ..+++..+..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++.........
T Consensus 420 g~L~~~l~~~~--~~l~~~~~~~i~~qi~~~L~~LH~~---~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~ 494 (613)
T 2ozo_A 420 GPLHKFLVGKR--EEIPVSNVAELLHQVSMGMKYLEEK---NFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYT 494 (613)
T ss_dssp CBHHHHHTTCT--TTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCSTTTTCC-------
T ss_pred CcHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHHC---CEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceee
Confidence 99999997643 4589999999999999999999999 99999999999999999999999999998664332211
Q ss_pred --eecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccccccccccccCC-CCCCCCcchH
Q 005864 565 --TEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLSLNEILDP-RLPLPSRNIQ 640 (673)
Q Consensus 565 --~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 640 (673)
....+++.|+|||++.+..++.++|||||||++|||++ |+.||......+. ...+... ++..+.
T Consensus 495 ~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~--------~~~i~~~~~~~~p~---- 562 (613)
T 2ozo_A 495 ARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEV--------MAFIEQGKRMECPP---- 562 (613)
T ss_dssp -------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHHH--------HHHHHTTCCCCCCT----
T ss_pred eccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH--------HHHHHcCCCCCCCC----
Confidence 22345688999999999999999999999999999998 9999975332111 1111111 222222
Q ss_pred HHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 641 DKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 641 ~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
..+.++.+++.+||+.||++||++.++++.|+
T Consensus 563 ~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~ 594 (613)
T 2ozo_A 563 ECPPELYALMSDCWIYKWEDRPDFLTVEQRMR 594 (613)
T ss_dssp TCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCChhHCcCHHHHHHHHH
Confidence 23446899999999999999999999999886
No 195
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.6e-40 Score=341.32 Aligned_cols=259 Identities=26% Similarity=0.383 Sum_probs=204.9
Q ss_pred cCCCccceeccCCcEEEEEEEe-----CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCC--
Q 005864 402 KNFDAEQCIGIGGQASVYRGEL-----PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPR-- 474 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~-- 474 (673)
++|++.+.||+|+||.||+|++ .+|+.||||++... .....+.+.+|++++++++||||+++++++...+
T Consensus 41 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 117 (326)
T 2w1i_A 41 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS---TEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRR 117 (326)
T ss_dssp GGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSC---CSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----
T ss_pred HHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccC---CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCC
Confidence 5688899999999999999973 46889999998753 2334678999999999999999999999987644
Q ss_pred eeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccce
Q 005864 475 HSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIA 554 (673)
Q Consensus 475 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~ 554 (673)
..++||||+++|+|.+++.... ..+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 118 ~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~kL~Dfg~~ 192 (326)
T 2w1i_A 118 NLKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLT 192 (326)
T ss_dssp CCEEEECCCTTCBHHHHHHHST--TSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTC
T ss_pred ceEEEEECCCCCCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEEcCCCcEEEecCcch
Confidence 7899999999999999998754 3588999999999999999999999 9999999999999999999999999999
Q ss_pred eecCCCCCC---ceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccc--ccccccc-----cccc
Q 005864 555 KFLKPGSSN---WTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLL--SSSSSNM-----NLSL 624 (673)
Q Consensus 555 ~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~--~~~~~~~-----~~~~ 624 (673)
......... .....++..|+|||.+.+..++.++||||||+++|||++|..|+...... +...... ....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (326)
T 2w1i_A 193 KVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHL 272 (326)
T ss_dssp EECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHH
T ss_pred hhccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHHH
Confidence 887544322 12345677899999999888999999999999999999999997632110 0000000 0001
Q ss_pred ccccCC--CCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 625 NEILDP--RLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 625 ~~~~~~--~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
.+.+.. +.+.+. ..+.++.+++.+||+.||++|||+.|+++.|+
T Consensus 273 ~~~~~~~~~~~~~~----~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~ 318 (326)
T 2w1i_A 273 IELLKNNGRLPRPD----GCPDEIYMIMTECWNNNVNQRPSFRDLALRVD 318 (326)
T ss_dssp HHHHHTTCCCCCCT----TCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHH
T ss_pred HHHhhcCCCCCCCC----cccHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 111111 122222 23346899999999999999999999999986
No 196
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=100.00 E-value=1.6e-40 Score=334.56 Aligned_cols=245 Identities=20% Similarity=0.375 Sum_probs=202.0
Q ss_pred HhcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeec------
Q 005864 400 ATKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSH------ 472 (673)
Q Consensus 400 ~~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~------ 472 (673)
...+|++.+.||+|+||.||+|... +|+.||+|++.... ..+.+|++++.+++||||+++++++..
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-------~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~ 81 (284)
T 2a19_B 9 FGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN-------EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPE 81 (284)
T ss_dssp HHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS-------GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC--
T ss_pred hccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc-------HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcc
Confidence 3467899999999999999999875 79999999986542 245689999999999999999998854
Q ss_pred ----------CCeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCC
Q 005864 473 ----------PRHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSS 542 (673)
Q Consensus 473 ----------~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~ 542 (673)
....++||||+++|+|.+++.... ...+++..+..++.|++.||.|||+. +|+||||||+||++++
T Consensus 82 ~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~ 157 (284)
T 2a19_B 82 TSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRR-GEKLDKVLALELFEQITKGVDYIHSK---KLINRDLKPSNIFLVD 157 (284)
T ss_dssp -------CCEEEEEEEEECCCCSCBHHHHHHHGG-GSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEE
T ss_pred cccccccccCcceEEEEEeccCCCCHHHHHhhcc-CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHEEEcC
Confidence 445799999999999999997643 24588999999999999999999999 9999999999999999
Q ss_pred CCceEEecccceeecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCccccccccccccccc
Q 005864 543 EYEARVSDFGIAKFLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNL 622 (673)
Q Consensus 543 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~ 622 (673)
++.+||+|||++....... ......+++.|+|||.+.+..++.++||||||+++|||++|..|+......
T Consensus 158 ~~~~kl~Dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~--------- 227 (284)
T 2a19_B 158 TKQVKIGDFGLVTSLKNDG-KRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSKF--------- 227 (284)
T ss_dssp TTEEEECCCTTCEESSCCS-CCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHHHH---------
T ss_pred CCCEEECcchhheeccccc-cccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhHHHH---------
Confidence 9999999999998775433 234456899999999999999999999999999999999999997532111
Q ss_pred ccccccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 623 SLNEILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
.........+ . ..+..+.+++.+||+.||++|||+.|+++.|+
T Consensus 228 -~~~~~~~~~~--~----~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~ 270 (284)
T 2a19_B 228 -FTDLRDGIIS--D----IFDKKEKTLLQKLLSKKPEDRPNTSEILRTLT 270 (284)
T ss_dssp -HHHHHTTCCC--T----TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred -HHHhhccccc--c----cCCHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence 1111111111 1 12234789999999999999999999999875
No 197
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=100.00 E-value=2e-40 Score=344.27 Aligned_cols=261 Identities=23% Similarity=0.303 Sum_probs=199.0
Q ss_pred cCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeec--------
Q 005864 402 KNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSH-------- 472 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~-------- 472 (673)
++|++.+.||+|+||+||+|+. .+|+.||||++...... ......+.+|+.+++.++||||+++++++..
T Consensus 17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 95 (351)
T 3mi9_A 17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEK-EGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC 95 (351)
T ss_dssp GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCS-SSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEeccccc-ccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence 5789999999999999999977 57999999998654322 2234567899999999999999999999976
Q ss_pred CCeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEeccc
Q 005864 473 PRHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFG 552 (673)
Q Consensus 473 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg 552 (673)
.+..++||||+++ +|.+.+.... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 96 ~~~~~lv~e~~~~-~l~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg 169 (351)
T 3mi9_A 96 KGSIYLVFDFCEH-DLAGLLSNVL--VKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLADFG 169 (351)
T ss_dssp -CEEEEEEECCSE-EHHHHHHCTT--SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCT
T ss_pred CceEEEEEeccCC-CHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCCEEEccch
Confidence 3468999999986 7888776653 3589999999999999999999999 99999999999999999999999999
Q ss_pred ceeecCCCC----CCceeccccccccccccccc-CCcCcchhHHHHHHHHHHHHhCCCCCccccccccccc-------cc
Q 005864 553 IAKFLKPGS----SNWTEFAGTFGYVAPELAYT-MKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSS-------NM 620 (673)
Q Consensus 553 ~~~~~~~~~----~~~~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~-------~~ 620 (673)
+++.+.... .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||........... ..
T Consensus 170 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~ 249 (351)
T 3mi9_A 170 LARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSIT 249 (351)
T ss_dssp TCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCC
T ss_pred hcccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCC
Confidence 998765322 22344678999999998876 4579999999999999999999999874322110000 00
Q ss_pred ccccc-----cccCC-C-CCCCCcchHHH------HHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 621 NLSLN-----EILDP-R-LPLPSRNIQDK------LISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 621 ~~~~~-----~~~~~-~-~~~~~~~~~~~------~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
...+. +..+. . ........... ...+.+++.+||+.||++|||++|+++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 311 (351)
T 3mi9_A 250 PEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN 311 (351)
T ss_dssp TTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred hhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhC
Confidence 00000 00000 0 00000111111 345889999999999999999999985
No 198
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=100.00 E-value=4.9e-40 Score=331.87 Aligned_cols=249 Identities=23% Similarity=0.352 Sum_probs=198.8
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeec----CCee
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSH----PRHS 476 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~----~~~~ 476 (673)
..|.+.+.||+|+||+||+|... ++..||+|.+...... ....+.+.+|+.++++++||||+++++++.. ....
T Consensus 26 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 104 (290)
T 1t4h_A 26 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLT-KSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCI 104 (290)
T ss_dssp CEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSC-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEE
T ss_pred eeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhC-HHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceE
Confidence 34777889999999999999764 6889999998764332 3456789999999999999999999999864 4568
Q ss_pred eEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCC--eEEecCCCCCeEeC-CCCceEEecccc
Q 005864 477 FLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPP--IVHRDISSKNVLLS-SEYEARVSDFGI 553 (673)
Q Consensus 477 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~dlk~~Nill~-~~~~~kl~Dfg~ 553 (673)
++||||+++|+|.+++... ..+++..+..++.|++.||+|||+. + ++||||||+||+++ +++.+||+|||+
T Consensus 105 ~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~ 178 (290)
T 1t4h_A 105 VLVTELMTSGTLKTYLKRF---KVMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKIGDLGL 178 (290)
T ss_dssp EEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCSCCCGGGEEESSTTSCEEECCTTG
T ss_pred EEEEEecCCCCHHHHHHHc---cCCCHHHHHHHHHHHHHHHHHHHcC---CCCEEECCCCHHHEEEECCCCCEEEeeCCC
Confidence 9999999999999999864 3478899999999999999999999 7 99999999999998 788999999999
Q ss_pred eeecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCC
Q 005864 554 AKFLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLP 633 (673)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (673)
+..... .......|++.|+|||.+. +.++.++||||+|+++|+|++|+.||........ ....+.....+
T Consensus 179 ~~~~~~--~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~-------~~~~~~~~~~~ 248 (290)
T 1t4h_A 179 ATLKRA--SFAKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQ-------IYRRVTSGVKP 248 (290)
T ss_dssp GGGCCT--TSBEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHH-------HHHHHTTTCCC
T ss_pred cccccc--cccccccCCcCcCCHHHHh-ccCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHH-------HHHHHhccCCc
Confidence 975432 2334567899999999876 4589999999999999999999999874322111 11111111111
Q ss_pred CCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 634 LPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 634 ~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.......+.++.+++.+||+.||.+|||++|+++
T Consensus 249 --~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 282 (290)
T 1t4h_A 249 --ASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp --GGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred --cccCCCCCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence 1111122345899999999999999999999986
No 199
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=100.00 E-value=2.1e-40 Score=339.81 Aligned_cols=254 Identities=23% Similarity=0.306 Sum_probs=197.8
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhh-----hhHHHHHHHHHHHHHhccCCCcccceeeeeecCC
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLS-----EISVQREFLNEIKALTEIRHRNIVKFYGFCSHPR 474 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~-----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~ 474 (673)
.++|.+.+.||+|+||.||+|... +|+.||||.+...... .......+.+|++++.+++||||+++++++..++
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~ 88 (322)
T 2ycf_A 9 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED 88 (322)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS
T ss_pred hhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc
Confidence 457999999999999999999765 6889999998654321 1223456889999999999999999999997665
Q ss_pred eeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCc---eEEecc
Q 005864 475 HSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYE---ARVSDF 551 (673)
Q Consensus 475 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~---~kl~Df 551 (673)
.++||||+++|+|.+++... ..+++..+..++.|++.||+|||++ +|+||||||+||+++.++. +||+||
T Consensus 89 -~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Df 161 (322)
T 2ycf_A 89 -YYIVLELMEGGELFDKVVGN---KRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKITDF 161 (322)
T ss_dssp -EEEEEECCTTEETHHHHSTT---CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSSSCCEEECCC
T ss_pred -eEEEEecCCCCcHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEecCCCCCeEEEccC
Confidence 89999999999999999765 3588999999999999999999999 9999999999999987654 999999
Q ss_pred cceeecCCCCCCceecccccccccccccc---cCCcCcchhHHHHHHHHHHHHhCCCCCccccccccccccccccccccc
Q 005864 552 GIAKFLKPGSSNWTEFAGTFGYVAPELAY---TMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEIL 628 (673)
Q Consensus 552 g~~~~~~~~~~~~~~~~~~~~y~aPE~~~---~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~ 628 (673)
|++...... .......|++.|+|||++. ...++.++||||||+++|||++|+.||....... .....+.
T Consensus 162 g~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-------~~~~~~~ 233 (322)
T 2ycf_A 162 GHSKILGET-SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQV-------SLKDQIT 233 (322)
T ss_dssp TTCEECCCC-HHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSS-------CHHHHHH
T ss_pred ccceecccc-cccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHH-------HHHHHHH
Confidence 999876432 1223456899999999874 5678899999999999999999999987432110 0111111
Q ss_pred CCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 629 DPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 629 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
..........+...+..+.+++.+||+.||++|||+.|+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~ 274 (322)
T 2ycf_A 234 SGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALR 274 (322)
T ss_dssp HTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred hCccccCchhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence 12222211222233456899999999999999999999985
No 200
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=100.00 E-value=3.9e-40 Score=354.56 Aligned_cols=194 Identities=23% Similarity=0.377 Sum_probs=155.2
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecC-----Ce
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHP-----RH 475 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-----~~ 475 (673)
++|++.+.||+|+||+||+|.+. +|+.||||++.... ......+.+.+|+.+++.++|||||++++++... ..
T Consensus 53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 131 (458)
T 3rp9_A 53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVF-EDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE 131 (458)
T ss_dssp TTEEECCC-------CEEEEEECC--CEEEEEEECSTT-SSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhh-cCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence 57999999999999999999765 79999999986543 2334567899999999999999999999999433 56
Q ss_pred eeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEeccccee
Q 005864 476 SFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAK 555 (673)
Q Consensus 476 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~ 555 (673)
.++||||+. |+|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+|||++.++.+||+|||+++
T Consensus 132 ~~lv~e~~~-~~L~~~~~~~---~~l~~~~~~~~~~qi~~aL~~LH~~---~iiHrDlKp~NILl~~~~~~kl~DFGla~ 204 (458)
T 3rp9_A 132 LYVVLEIAD-SDFKKLFRTP---VYLTELHIKTLLYNLLVGVKYVHSA---GILHRDLKPANCLVNQDCSVKVCDFGLAR 204 (458)
T ss_dssp EEEEECCCS-EEHHHHHHSS---CCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTCB
T ss_pred EEEEEeccc-cchhhhcccC---CCCCHHHHHHHHHHHHHHHHHHHhC---CcCCCCCChhhEEECCCCCEeecccccch
Confidence 899999985 6999999765 3589999999999999999999999 99999999999999999999999999998
Q ss_pred ecCCCC---------------------------CCceeccccccccccccc-ccCCcCcchhHHHHHHHHHHHHhC
Q 005864 556 FLKPGS---------------------------SNWTEFAGTFGYVAPELA-YTMKVTEKCDVYSFGVLALEVIKG 603 (673)
Q Consensus 556 ~~~~~~---------------------------~~~~~~~~~~~y~aPE~~-~~~~~~~~~Dv~slG~il~el~~g 603 (673)
...... .......||+.|+|||++ ....++.++|||||||++|||++|
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg 280 (458)
T 3rp9_A 205 TVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNM 280 (458)
T ss_dssp CTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTT
T ss_pred hccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHh
Confidence 764321 122445789999999976 466799999999999999999994
No 201
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.4e-41 Score=349.85 Aligned_cols=255 Identities=22% Similarity=0.298 Sum_probs=201.5
Q ss_pred cCCCccceeccCCcEEEEEEEe----CCCCEEEEEeeccchhh-hhHHHHHHHHHHHHHhcc-CCCcccceeeeeecCCe
Q 005864 402 KNFDAEQCIGIGGQASVYRGEL----PSGEVVAVKKFHSLLLS-EISVQREFLNEIKALTEI-RHRNIVKFYGFCSHPRH 475 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~----~~~~~vavK~~~~~~~~-~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~ 475 (673)
++|++.+.||+|+||+||+|+. .+|+.||||+++..... .....+.+.+|++++..+ +||||+++++++..++.
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~ 133 (355)
T 1vzo_A 54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK 133 (355)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCce
Confidence 5789999999999999999977 47899999998754321 112345577899999999 69999999999999999
Q ss_pred eeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEeccccee
Q 005864 476 SFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAK 555 (673)
Q Consensus 476 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~ 555 (673)
.++||||+++|+|.+++.... .+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 134 ~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~DfG~a~ 207 (355)
T 1vzo_A 134 LHLILDYINGGELFTHLSQRE---RFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLSK 207 (355)
T ss_dssp EEEEECCCCSCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEESCSSEEE
T ss_pred EEEEeecCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCcEEEeeCCCCe
Confidence 999999999999999998653 488999999999999999999999 99999999999999999999999999998
Q ss_pred ecCCCCC-Cceeccccccccccccccc--CCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCC
Q 005864 556 FLKPGSS-NWTEFAGTFGYVAPELAYT--MKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRL 632 (673)
Q Consensus 556 ~~~~~~~-~~~~~~~~~~y~aPE~~~~--~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (673)
....... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||........ .......+.....
T Consensus 208 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~----~~~~~~~~~~~~~ 283 (355)
T 1vzo_A 208 EFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNS----QAEISRRILKSEP 283 (355)
T ss_dssp ECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCC----HHHHHHHHHHCCC
T ss_pred ecccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccch----HHHHHHHHhccCC
Confidence 7643222 2334679999999999885 3478899999999999999999999873321111 0111111111222
Q ss_pred CCCCcchHHHHHHHHHHHHHcccCCCCCCC-----CHHHHHHH
Q 005864 633 PLPSRNIQDKLISILEVALLCLEESPESRP-----TMQTVCQL 670 (673)
Q Consensus 633 ~~~~~~~~~~~~~l~~li~~cl~~dp~~Rp-----s~~~v~~~ 670 (673)
+.+. ..+..+.+++.+||+.||++|| +++|+++.
T Consensus 284 ~~~~----~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h 322 (355)
T 1vzo_A 284 PYPQ----EMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEH 322 (355)
T ss_dssp CCCT----TSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTS
T ss_pred CCCc----ccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcC
Confidence 2222 2234588999999999999999 99999863
No 202
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=100.00 E-value=8.9e-41 Score=339.54 Aligned_cols=252 Identities=21% Similarity=0.343 Sum_probs=197.7
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 479 (673)
.+.|++.+.||+|+||+||+|... +|+.||+|.+.... ....+.+.+|+.++..++||||+++++++..++..++|
T Consensus 18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 94 (302)
T 2j7t_A 18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKS---EEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIM 94 (302)
T ss_dssp GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEE
T ss_pred ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCC---HHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEE
Confidence 467899999999999999999875 58999999986542 22467888999999999999999999999999999999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCC
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKP 559 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~ 559 (673)
|||+++++|.+++.... ..+++..+..++.|++.||.|||+. +++||||||+||+++.++.+||+|||++.....
T Consensus 95 ~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 169 (302)
T 2j7t_A 95 IEFCPGGAVDAIMLELD--RGLTEPQIQVVCRQMLEALNFLHSK---RIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLK 169 (302)
T ss_dssp EECCTTEEHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCCHHHHHHHH
T ss_pred EEeCCCCcHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEECCCCCEEEEECCCCccccc
Confidence 99999999999987643 3588999999999999999999999 999999999999999999999999998764322
Q ss_pred CCCCceeccccccccccccc-----ccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCC
Q 005864 560 GSSNWTEFAGTFGYVAPELA-----YTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPL 634 (673)
Q Consensus 560 ~~~~~~~~~~~~~y~aPE~~-----~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (673)
.........|++.|+|||.+ .+..++.++||||||+++|||++|+.||......... ..+.....+.
T Consensus 170 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~--------~~~~~~~~~~ 241 (302)
T 2j7t_A 170 TLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVL--------LKIAKSDPPT 241 (302)
T ss_dssp HHHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHH--------HHHHHSCCCC
T ss_pred cccccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHHHH--------HHHhccCCcc
Confidence 11122345689999999988 3667899999999999999999999998743321110 0010011000
Q ss_pred CCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 635 PSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 635 ~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.......+..+.+++.+||+.||++|||+.|+++
T Consensus 242 -~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 275 (302)
T 2j7t_A 242 -LLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLE 275 (302)
T ss_dssp -CSSGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred -cCCccccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 0011223446889999999999999999999975
No 203
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.1e-41 Score=349.43 Aligned_cols=255 Identities=16% Similarity=0.209 Sum_probs=199.4
Q ss_pred cCCCccceeccCCcEEEEEEEeCC---------CCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccc-------
Q 005864 402 KNFDAEQCIGIGGQASVYRGELPS---------GEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVK------- 465 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~~---------~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~------- 465 (673)
++|++.+.||+|+||+||+|+... ++.||+|.+... +.+.+|++++.+++||||++
T Consensus 42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~--------~~~~~E~~~l~~l~h~niv~~~~~~~~ 113 (352)
T 2jii_A 42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD--------GRLFNEQNFFQRAAKPLQVNKWKKLYS 113 (352)
T ss_dssp CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT--------STHHHHHHHHHHHCCHHHHHHHHHHTT
T ss_pred CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc--------chHHHHHHHHHHhcccchhhhhhhhcc
Confidence 578999999999999999997753 889999998643 35778999999999999998
Q ss_pred --------eeeeeec-CCeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCC
Q 005864 466 --------FYGFCSH-PRHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSK 536 (673)
Q Consensus 466 --------l~~~~~~-~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~ 536 (673)
+++++.. ++..++||||+ +++|.+++.... ...+++..+..++.|++.||+|||++ +|+||||||+
T Consensus 114 ~~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~-~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~ 188 (352)
T 2jii_A 114 TPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSP-KHVLSERSVLQVACRLLDALEFLHEN---EYVHGNVTAE 188 (352)
T ss_dssp CTTCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSG-GGCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCGG
T ss_pred CCccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCC-cCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHH
Confidence 5677765 67889999999 999999998652 24589999999999999999999999 9999999999
Q ss_pred CeEeCCCC--ceEEecccceeecCCCCC-------CceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCC
Q 005864 537 NVLLSSEY--EARVSDFGIAKFLKPGSS-------NWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPR 607 (673)
Q Consensus 537 Nill~~~~--~~kl~Dfg~~~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~ 607 (673)
||+++.++ .+||+|||+++.+..... ......||+.|+|||.+.+..++.++||||||+++|||++|+.||
T Consensus 189 NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf 268 (352)
T 2jii_A 189 NIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPW 268 (352)
T ss_dssp GEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTT
T ss_pred HEEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCc
Confidence 99999998 899999999987643221 123357899999999999989999999999999999999999999
Q ss_pred cccccccccccccccccccccCC--CCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 608 DFISLLSSSSSNMNLSLNEILDP--RLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
......... ........... .+......+...+.++.+++.+||+.||++|||++|+++.|+
T Consensus 269 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~ 332 (352)
T 2jii_A 269 TNCLPNTED---IMKQKQKFVDKPGPFVGPCGHWIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLE 332 (352)
T ss_dssp GGGTTCHHH---HHHHHHHHHHSCCCEECTTSCEECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHH
T ss_pred ccCCcCHHH---HHHHHHhccCChhhhhhhccccCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHH
Confidence 754311100 00000000000 000000011122346899999999999999999999999986
No 204
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.9e-40 Score=339.56 Aligned_cols=254 Identities=25% Similarity=0.384 Sum_probs=195.8
Q ss_pred HHHhcCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhcc-CCCcccceeeeeec---
Q 005864 398 IRATKNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEI-RHRNIVKFYGFCSH--- 472 (673)
Q Consensus 398 ~~~~~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~--- 472 (673)
....++|++.+.||+|+||.||+|++ .+|+.||||++..... ..+.+.+|+.++.++ +||||+++++++..
T Consensus 20 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~----~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~ 95 (326)
T 2x7f_A 20 RDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD----EEEEIKQEINMLKKYSHHRNIATYYGAFIKKNP 95 (326)
T ss_dssp CCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS----TTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC-
T ss_pred cCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc----cHHHHHHHHHHHHhccCCCCeeeeeeEEeeccC
Confidence 33467899999999999999999977 4799999999865322 246788999999999 89999999999976
Q ss_pred ---CCeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEe
Q 005864 473 ---PRHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVS 549 (673)
Q Consensus 473 ---~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~ 549 (673)
.+..++||||+++|+|.+++.... ...+++..+..++.|++.||+|||+. +++||||||+||+++.++.+||+
T Consensus 96 ~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~kl~ 171 (326)
T 2x7f_A 96 PGMDDQLWLVMEFCGAGSVTDLIKNTK-GNTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKLV 171 (326)
T ss_dssp -CCCCEEEEEEECCTTEEHHHHHHHSG-GGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEEC
T ss_pred ccccceEEEEEEcCCCCcHHHHHHhcc-cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCcHHHEEEcCCCCEEEe
Confidence 467899999999999999998653 24588899999999999999999999 99999999999999999999999
Q ss_pred cccceeecCCCCCCceecccccccccccccc-----cCCcCcchhHHHHHHHHHHHHhCCCCCccccccccccccccccc
Q 005864 550 DFGIAKFLKPGSSNWTEFAGTFGYVAPELAY-----TMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSL 624 (673)
Q Consensus 550 Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~-----~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~ 624 (673)
|||++..............|++.|+|||.+. +..++.++||||||+++|||++|+.||........... .
T Consensus 172 Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~-----~ 246 (326)
T 2x7f_A 172 DFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFL-----I 246 (326)
T ss_dssp CCTTTC-------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHH-----H
T ss_pred eCcCceecCcCccccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHH-----h
Confidence 9999987654433344567899999999986 56789999999999999999999999874332211100 0
Q ss_pred ccccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 625 NEILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.....+... . ...+..+.+++.+||+.||.+|||++|+++
T Consensus 247 ~~~~~~~~~--~---~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 286 (326)
T 2x7f_A 247 PRNPAPRLK--S---KKWSKKFQSFIESCLVKNHSQRPATEQLMK 286 (326)
T ss_dssp HHSCCCCCS--C---SCSCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred hcCccccCC--c---cccCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence 000011111 0 112345889999999999999999999986
No 205
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=100.00 E-value=2.2e-40 Score=336.06 Aligned_cols=262 Identities=22% Similarity=0.308 Sum_probs=201.7
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
++|++.+.||+|+||+||+|+.. +|+.||||++...... ....+.+.+|+.++++++||||+++++++..++..++||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 81 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTET-EGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVF 81 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC---------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccc-hhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEE
Confidence 57889999999999999999775 6999999998654322 223467889999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
||++ |+|.+++..... ..+++..+..++.|++.||+|||+. +++||||||+||+++.++.+||+|||++......
T Consensus 82 e~~~-~~L~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~ 156 (299)
T 2r3i_A 82 EFLH-QDLKKFMDASAL-TGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP 156 (299)
T ss_dssp ECCS-EEHHHHHHHTTT-TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECSTTHHHHHCCC
T ss_pred Eccc-CCHHHHHHhhhc-cCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHeEEcCCCCEEECcchhhhhccCC
Confidence 9998 599999986542 4578899999999999999999999 9999999999999999999999999999876544
Q ss_pred CCCceecccccccccccccccCC-cCcchhHHHHHHHHHHHHhCCCCCcccccccccccc-------ccccc---cc--c
Q 005864 561 SSNWTEFAGTFGYVAPELAYTMK-VTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSN-------MNLSL---NE--I 627 (673)
Q Consensus 561 ~~~~~~~~~~~~y~aPE~~~~~~-~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~-------~~~~~---~~--~ 627 (673)
........+++.|+|||.+.+.. ++.++||||||+++|||++|+.||......+..... ....+ .. .
T Consensus 157 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (299)
T 2r3i_A 157 VRTYTHEVVTLWYRAPEILLGAKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD 236 (299)
T ss_dssp SBCTTSCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTT
T ss_pred ccccCcccccccccCcHHhhccccCChHHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCCchhhhhHhhcCcc
Confidence 33444567899999999987765 789999999999999999999999754322110000 00000 00 0
Q ss_pred cCCCCCCC-Ccc----hHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 628 LDPRLPLP-SRN----IQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 628 ~~~~~~~~-~~~----~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
..+.++.. ... ....+.++.+++.+||+.||++|||++|+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~~l~ 283 (299)
T 2r3i_A 237 YKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALA 283 (299)
T ss_dssp CCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred cchhhhcccchhhHhhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 00111100 000 0123356889999999999999999999986
No 206
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=100.00 E-value=9.2e-41 Score=339.60 Aligned_cols=263 Identities=25% Similarity=0.414 Sum_probs=185.7
Q ss_pred HhcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeE
Q 005864 400 ATKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFL 478 (673)
Q Consensus 400 ~~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 478 (673)
..++|++.+.||+|+||.||+|... +++.||||++..... ....+++.+|+.++.+++||||+++++++..++..++
T Consensus 13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 90 (303)
T 2vwi_A 13 NRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKC--QTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWL 90 (303)
T ss_dssp CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC------------------CCCCCCCTTBCCEEEEEESSSCEEE
T ss_pred chhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhc--chhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEE
Confidence 3468999999999999999999764 689999999865422 2345678899999999999999999999999999999
Q ss_pred EEecccCCChHHHHhcC-----CCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccc
Q 005864 479 VYECLERGSLAEILSND-----GSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGI 553 (673)
Q Consensus 479 v~e~~~~gsL~~~l~~~-----~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~ 553 (673)
||||+++|+|.+++... .....+++..+..++.|++.||+|||+. +++||||||+||+++.++.+||+|||+
T Consensus 91 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~ 167 (303)
T 2vwi_A 91 VMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN---GQIHRDVKAGNILLGEDGSVQIADFGV 167 (303)
T ss_dssp EEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEECCCHH
T ss_pred EehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCCChhhEEEcCCCCEEEEeccc
Confidence 99999999999998641 1224589999999999999999999999 999999999999999999999999999
Q ss_pred eeecCCCCC-----Cceeccccccccccccccc-CCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccc
Q 005864 554 AKFLKPGSS-----NWTEFAGTFGYVAPELAYT-MKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEI 627 (673)
Q Consensus 554 ~~~~~~~~~-----~~~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~ 627 (673)
+........ ......|++.|+|||.+.+ ..++.++||||||+++|||++|+.||...................
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~- 246 (303)
T 2vwi_A 168 SAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPPS- 246 (303)
T ss_dssp HHHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHTSSCCC-
T ss_pred hheeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHHHHHhccCCCc-
Confidence 976543221 1234568999999999875 568999999999999999999999997543221110000000000
Q ss_pred cCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 628 LDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
...... ........+.++.+++.+||+.||.+|||+.|+++
T Consensus 247 ~~~~~~-~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 287 (303)
T 2vwi_A 247 LETGVQ-DKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELLR 287 (303)
T ss_dssp TTC------CCCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred cccccc-cchhhhhhhHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 000000 00001122345889999999999999999999985
No 207
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=100.00 E-value=9.8e-40 Score=341.23 Aligned_cols=257 Identities=20% Similarity=0.287 Sum_probs=193.4
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCC------
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPR------ 474 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~------ 474 (673)
++|++.+.||+|+||+||+|... +|+.||||++..... .....+.+.+|+.+++.++||||+++++++...+
T Consensus 25 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 103 (371)
T 2xrw_A 25 KRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ 103 (371)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTS-SHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred hheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccC-ChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence 57999999999999999999764 689999999875432 2344677889999999999999999999997654
Q ss_pred eeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccce
Q 005864 475 HSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIA 554 (673)
Q Consensus 475 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~ 554 (673)
..++||||+++ +|.+.+.. .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 104 ~~~lv~e~~~~-~l~~~~~~-----~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a 174 (371)
T 2xrw_A 104 DVYIVMELMDA-NLCQVIQM-----ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLA 174 (371)
T ss_dssp EEEEEEECCSE-EHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCCCC-
T ss_pred ceEEEEEcCCC-CHHHHHhh-----ccCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEEEeecc
Confidence 67999999986 78888863 378899999999999999999999 9999999999999999999999999999
Q ss_pred eecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccc-------------
Q 005864 555 KFLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMN------------- 621 (673)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~------------- 621 (673)
+..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||......+.......
T Consensus 175 ~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~ 253 (371)
T 2xrw_A 175 RTAGTS-FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKL 253 (371)
T ss_dssp ----------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHC-CCCCCHHHHTTS
T ss_pred cccccc-cccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHh
Confidence 865432 223446789999999999999999999999999999999999999975432211000000
Q ss_pred -ccccccc--CC--------------CCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 622 -LSLNEIL--DP--------------RLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 622 -~~~~~~~--~~--------------~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
....... .+ ..+.........+.++.+++.+||+.||++|||++|+++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~ 318 (371)
T 2xrw_A 254 QPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQ 318 (371)
T ss_dssp CHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred hhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhC
Confidence 0000000 00 011111122334667999999999999999999999986
No 208
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=100.00 E-value=4.4e-40 Score=365.22 Aligned_cols=245 Identities=26% Similarity=0.389 Sum_probs=196.5
Q ss_pred ceeccCCcEEEEEEEeC---CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEEeccc
Q 005864 408 QCIGIGGQASVYRGELP---SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVYECLE 484 (673)
Q Consensus 408 ~~ig~G~~g~vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~ 484 (673)
+.||+|+||+||+|.+. .++.||||+++... .+....+++.+|++++.+++|||||++++++.. +..++||||++
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~-~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~ 452 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEA-NDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAE 452 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGG-GCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCT
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEecccc-CCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccC
Confidence 47999999999999552 46789999987643 233446789999999999999999999999965 45789999999
Q ss_pred CCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCCCCC-
Q 005864 485 RGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPGSSN- 563 (673)
Q Consensus 485 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~- 563 (673)
+|+|.+++... ..+++..+..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++.+......
T Consensus 453 ~g~L~~~l~~~---~~l~~~~~~~i~~qi~~~L~yLH~~---~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~ 526 (635)
T 4fl3_A 453 LGPLNKYLQQN---RHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYY 526 (635)
T ss_dssp TEEHHHHHHHC---TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC-----
T ss_pred CCCHHHHHhhC---CCCCHHHHHHHHHHHHHHHHHHHHC---CEeCCCCChHhEEEeCCCCEEEEEcCCccccccCcccc
Confidence 99999999765 3588999999999999999999999 9999999999999999999999999999876543321
Q ss_pred --ceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccccccccccccCC-CCCCCCcch
Q 005864 564 --WTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLSLNEILDP-RLPLPSRNI 639 (673)
Q Consensus 564 --~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 639 (673)
.....+|+.|+|||++.+..++.++|||||||++|||++ |+.||......+. ...+... +...+.
T Consensus 527 ~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~--------~~~i~~~~~~~~p~--- 595 (635)
T 4fl3_A 527 KAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEV--------TAMLEKGERMGCPA--- 595 (635)
T ss_dssp --------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHH--------HHHHHTTCCCCCCT---
T ss_pred ccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHH--------HHHHHcCCCCCCCC---
Confidence 223456788999999999999999999999999999998 9999974332111 1111111 112222
Q ss_pred HHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 640 QDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 640 ~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
..+.++.+++.+||+.||++|||+++|++.|+
T Consensus 596 -~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~ 627 (635)
T 4fl3_A 596 -GCPREMYDLMNLCWTYDVENRPGFAAVELRLR 627 (635)
T ss_dssp -TCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHH
Confidence 23356899999999999999999999999986
No 209
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=100.00 E-value=2.3e-40 Score=345.16 Aligned_cols=258 Identities=23% Similarity=0.346 Sum_probs=202.7
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 479 (673)
.++|++.+.||+|+||+||+|.+. +|+.||+|++.... .....+.+.+|+.++++++||||+++++++..++..++|
T Consensus 32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 109 (360)
T 3eqc_A 32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI--KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISIC 109 (360)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCC--CHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEE
T ss_pred cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEecccc--CHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEE
Confidence 357899999999999999999775 68999999987642 233567899999999999999999999999999999999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCC
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKP 559 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~ 559 (673)
|||+++|+|.+++...+ .+++..+..++.|++.||+|||+.. +|+||||||+||+++.++.+||+|||++.....
T Consensus 110 ~e~~~~~~L~~~l~~~~---~~~~~~~~~i~~~i~~~l~~lh~~~--~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 184 (360)
T 3eqc_A 110 MEHMDGGSLDQVLKKAG---RIPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID 184 (360)
T ss_dssp ECCCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHHH--CCCCSCCSGGGEEECTTCCEEECCCCCCHHHHH
T ss_pred EECCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHhC--CEEcCCccHHHEEECCCCCEEEEECCCCccccc
Confidence 99999999999998753 4788999999999999999999831 799999999999999999999999999875532
Q ss_pred CCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccc--------c-----------
Q 005864 560 GSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSN--------M----------- 620 (673)
Q Consensus 560 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~--------~----------- 620 (673)
. ......||+.|+|||++.+..++.++||||||+++|||++|+.||......+..... .
T Consensus 185 ~--~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (360)
T 3eqc_A 185 S--MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGR 262 (360)
T ss_dssp H--C----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC-------------------
T ss_pred c--cccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccCCC
Confidence 1 223457899999999999999999999999999999999999999743221100000 0
Q ss_pred ---------------ccccccccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 621 ---------------NLSLNEILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 621 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
......+.....+. ......+.++.+++.+||+.||++|||++|+++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 324 (360)
T 3eqc_A 263 PLNKFGMDSRPPMAIFELLDYIVNEPPPK--LPSGVFSLEFQDFVNKCLIKNPAERADLKQLMV 324 (360)
T ss_dssp -----------CCCHHHHHHHHHHSCCCC--CCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred cccccccCCCCcccchhhhhHHhccCCCC--CCcccccHHHHHHHHHHhhcChhhCCCHHHHhh
Confidence 00000000000000 001112446889999999999999999999985
No 210
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=100.00 E-value=4e-40 Score=343.66 Aligned_cols=270 Identities=21% Similarity=0.290 Sum_probs=201.7
Q ss_pred cHHHHHHHhcCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhh--------hhHHHHHHHHHHHHHhccCCCccc
Q 005864 393 VYEEIIRATKNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLS--------EISVQREFLNEIKALTEIRHRNIV 464 (673)
Q Consensus 393 ~~~~~~~~~~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~--------~~~~~~~~~~e~~~l~~l~h~niv 464 (673)
...++....++|.+.+.||+|+||.||+|...+|+.||||++...... +....+.+.+|+.++++++||||+
T Consensus 13 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv 92 (362)
T 3pg1_A 13 LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL 92 (362)
T ss_dssp HHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred HHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence 456778888999999999999999999999888999999998653221 223457899999999999999999
Q ss_pred ceeeeeec-----CCeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeE
Q 005864 465 KFYGFCSH-----PRHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVL 539 (673)
Q Consensus 465 ~l~~~~~~-----~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nil 539 (673)
++++++.. ....++||||++ |+|.+++.... ..+++..+..++.|++.||+|||+. +|+||||||+||+
T Consensus 93 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~NIl 166 (362)
T 3pg1_A 93 GLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQR--IVISPQHIQYFMYHILLGLHVLHEA---GVVHRDLHPGNIL 166 (362)
T ss_dssp CCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTT--SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEE
T ss_pred ceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHHC---cCEecCCChHHEE
Confidence 99999843 336799999998 58888887643 4689999999999999999999999 9999999999999
Q ss_pred eCCCCceEEecccceeecCCCCCCceeccccccccccccccc-CCcCcchhHHHHHHHHHHHHhCCCCCccccccccccc
Q 005864 540 LSSEYEARVSDFGIAKFLKPGSSNWTEFAGTFGYVAPELAYT-MKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSS 618 (673)
Q Consensus 540 l~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~ 618 (673)
++.++.+||+|||++...... .......+++.|+|||.+.+ ..++.++||||+||++|||++|+.||......+....
T Consensus 167 ~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~ 245 (362)
T 3pg1_A 167 LADNNDITICDFNLAREDTAD-ANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLNK 245 (362)
T ss_dssp ECTTCCEEECCTTC----------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHH
T ss_pred EcCCCCEEEEecCcccccccc-cccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence 999999999999999754332 22344678999999999876 6789999999999999999999999975332111000
Q ss_pred cc---------------ccccccccCCCC-CCCCcch----HHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 619 NM---------------NLSLNEILDPRL-PLPSRNI----QDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 619 ~~---------------~~~~~~~~~~~~-~~~~~~~----~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.. .....+.+.... ..+...+ ...+..+.+++.+||+.||++|||+.|+++
T Consensus 246 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 316 (362)
T 3pg1_A 246 IVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALR 316 (362)
T ss_dssp HHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHc
Confidence 00 000000011111 1111111 122456889999999999999999999985
No 211
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.8e-40 Score=341.44 Aligned_cols=250 Identities=24% Similarity=0.333 Sum_probs=184.7
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccC-CCcccceeeeee--------
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIR-HRNIVKFYGFCS-------- 471 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~-------- 471 (673)
.+|++.+.||+|+||.||+|++. +|+.||||++... .....+.+.+|+.++.++. ||||+++++++.
T Consensus 28 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~ 104 (337)
T 3ll6_A 28 LRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSN---EEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDT 104 (337)
T ss_dssp EEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEES---SHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTT
T ss_pred ceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCC---chHHHHHHHHHHHHHHHhccCCChhhcccccccccccccc
Confidence 57899999999999999999764 7999999998553 2334677899999999996 999999999984
Q ss_pred cCCeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCC--eEEecCCCCCeEeCCCCceEEe
Q 005864 472 HPRHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPP--IVHRDISSKNVLLSSEYEARVS 549 (673)
Q Consensus 472 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~dlk~~Nill~~~~~~kl~ 549 (673)
.....++|+||++ |+|.+++........+++..++.++.|++.||+|||+. + |+||||||+||+++.++.+||+
T Consensus 105 ~~~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~~~ivH~Dikp~NIl~~~~~~~kl~ 180 (337)
T 3ll6_A 105 GQAEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQ---KPPIIHRDLKVENLLLSNQGTIKLC 180 (337)
T ss_dssp SSEEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCCCCCGGGCEECTTSCEEBC
T ss_pred CCceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCEEEccCCcccEEECCCCCEEEe
Confidence 3445789999996 69999987643335689999999999999999999998 7 9999999999999999999999
Q ss_pred cccceeecCCCCCC------------ceeccccccccccccc---ccCCcCcchhHHHHHHHHHHHHhCCCCCccccccc
Q 005864 550 DFGIAKFLKPGSSN------------WTEFAGTFGYVAPELA---YTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLS 614 (673)
Q Consensus 550 Dfg~~~~~~~~~~~------------~~~~~~~~~y~aPE~~---~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~ 614 (673)
|||++......... .....+|+.|+|||.+ .+..++.++||||||+++|||++|+.||.......
T Consensus 181 Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~ 260 (337)
T 3ll6_A 181 DFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLR 260 (337)
T ss_dssp CCTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC-------
T ss_pred cCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHHH
Confidence 99999876433221 1134589999999998 56678999999999999999999999987432211
Q ss_pred ccccccccccccccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 615 SSSSNMNLSLNEILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
+.......+.. ...+..+.+++.+||+.||++|||+.|+++.|+
T Consensus 261 ------------~~~~~~~~~~~--~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~ 304 (337)
T 3ll6_A 261 ------------IVNGKYSIPPH--DTQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQ 304 (337)
T ss_dssp -----------------CCCCTT--CCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHH
T ss_pred ------------hhcCcccCCcc--cccchHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence 11111111100 011223778999999999999999999999885
No 212
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=100.00 E-value=7.3e-40 Score=332.93 Aligned_cols=251 Identities=23% Similarity=0.371 Sum_probs=193.8
Q ss_pred HhcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeec------
Q 005864 400 ATKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSH------ 472 (673)
Q Consensus 400 ~~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~------ 472 (673)
..++|++.+.||+|+||.||+|+.. +|+.||||++... ....+.+.+|+.++++++||||+++++++.+
T Consensus 4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~----~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 79 (303)
T 1zy4_A 4 YASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT----EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVK 79 (303)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE----HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC
T ss_pred ccccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc----HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhh
Confidence 3467899999999999999999764 7999999998643 2346788999999999999999999998854
Q ss_pred -------CCeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCc
Q 005864 473 -------PRHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYE 545 (673)
Q Consensus 473 -------~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~ 545 (673)
.+..++||||+++|+|.+++.... ..+++..++.++.|+++||+|||++ +++||||||+||+++.++.
T Consensus 80 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dlkp~Nil~~~~~~ 154 (303)
T 1zy4_A 80 PMTAVKKKSTLFIQMEYCENGTLYDLIHSEN--LNQQRDEYWRLFRQILEALSYIHSQ---GIIHRDLKPMNIFIDESRN 154 (303)
T ss_dssp ------CEEEEEEEEECCCSCBHHHHHHHSC--GGGCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSC
T ss_pred hhcccccCCceEEEEecCCCCCHHHhhhccc--cccchHHHHHHHHHHHHHHHHHHhC---CeecccCCHHhEEEcCCCC
Confidence 456789999999999999998653 4578889999999999999999999 9999999999999999999
Q ss_pred eEEecccceeecCCCC--------------CCceecccccccccccccccC-CcCcchhHHHHHHHHHHHHhCCCCCccc
Q 005864 546 ARVSDFGIAKFLKPGS--------------SNWTEFAGTFGYVAPELAYTM-KVTEKCDVYSFGVLALEVIKGKHPRDFI 610 (673)
Q Consensus 546 ~kl~Dfg~~~~~~~~~--------------~~~~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~~g~~p~~~~ 610 (673)
+||+|||++....... .......|++.|+|||.+.+. .++.++||||+|+++|||++ ||...
T Consensus 155 ~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~ 231 (303)
T 1zy4_A 155 VKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTG 231 (303)
T ss_dssp EEECCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSH
T ss_pred EEEeeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCc
Confidence 9999999998654321 122345689999999998764 68999999999999999998 44311
Q ss_pred ccccccccccccccccccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 611 SLLSSSSSNMNLSLNEILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
... ......+.......+.......+..+.+++.+||+.||++|||++|+++
T Consensus 232 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 283 (303)
T 1zy4_A 232 MER-------VNILKKLRSVSIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLN 283 (303)
T ss_dssp HHH-------HHHHHHHHSTTCCCCTTCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred hhH-------HHHHHhccccccccCccccccchHHHHHHHHHHHhcCcccCcCHHHHhC
Confidence 100 0011111111222222222334456889999999999999999999986
No 213
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=100.00 E-value=7.1e-40 Score=330.14 Aligned_cols=254 Identities=23% Similarity=0.331 Sum_probs=205.5
Q ss_pred HHhcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeee
Q 005864 399 RATKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSF 477 (673)
Q Consensus 399 ~~~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 477 (673)
...++|++.+.||+|+||+||+|... +++.||+|++...... ....+.+.+|++++++++||||+++++++...+..+
T Consensus 19 ~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~ 97 (287)
T 2wei_A 19 TFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAK-NKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFY 97 (287)
T ss_dssp HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBS-SSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE
T ss_pred HHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccc-hHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEE
Confidence 34568999999999999999999775 7999999998754332 234677899999999999999999999999999999
Q ss_pred EEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCC---CceEEecccce
Q 005864 478 LVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSE---YEARVSDFGIA 554 (673)
Q Consensus 478 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~---~~~kl~Dfg~~ 554 (673)
+|+||+++++|.+++.... .+++..+..++.|++.||+|||+. +++||||||+||+++.+ +.+||+|||++
T Consensus 98 lv~e~~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~ 171 (287)
T 2wei_A 98 IVGELYTGGELFDEIIKRK---RFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLS 171 (287)
T ss_dssp EEECCCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEECSTTGG
T ss_pred EEEEccCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChhhEEEecCCCcccEEEeccCcc
Confidence 9999999999999987643 488999999999999999999999 99999999999999764 46999999999
Q ss_pred eecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCC
Q 005864 555 KFLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPL 634 (673)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (673)
....... ......+++.|+|||.+.+ .++.++||||||+++|+|++|+.||......+ ....+.......
T Consensus 172 ~~~~~~~-~~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~--------~~~~~~~~~~~~ 241 (287)
T 2wei_A 172 TCFQQNT-KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYD--------ILKRVETGKYAF 241 (287)
T ss_dssp GTBCCCS-SCSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH--------HHHHHHHCCCCC
T ss_pred eeecCCC-ccccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCCHHH--------HHHHHHcCCCCC
Confidence 8664332 2234568899999998865 48999999999999999999999987432211 111111222222
Q ss_pred CCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 635 PSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 635 ~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
+...+...+.++.+++.+||+.||++|||+.|+++
T Consensus 242 ~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 276 (287)
T 2wei_A 242 DLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLE 276 (287)
T ss_dssp CSGGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred CchhhhhcCHHHHHHHHHHcccChhhCcCHHHHhc
Confidence 22222234456899999999999999999999986
No 214
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=100.00 E-value=4.3e-39 Score=342.22 Aligned_cols=197 Identities=21% Similarity=0.304 Sum_probs=171.6
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhcc------CCCcccceeeeeecCC
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEI------RHRNIVKFYGFCSHPR 474 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~niv~l~~~~~~~~ 474 (673)
.+|++.+.||+|+||+||+|... +++.||||++.... ...+.+.+|+.++..+ .|+||+++++++...+
T Consensus 97 ~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~ 172 (429)
T 3kvw_A 97 YRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEK----RFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRN 172 (429)
T ss_dssp TTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCH----HHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETT
T ss_pred CcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCcc----chHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCC
Confidence 56899999999999999999665 58999999987532 2345677788888777 5779999999999999
Q ss_pred eeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCc--eEEeccc
Q 005864 475 HSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYE--ARVSDFG 552 (673)
Q Consensus 475 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~--~kl~Dfg 552 (673)
..++||||+. ++|.+++..... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++. +||+|||
T Consensus 173 ~~~lv~e~~~-~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NILl~~~~~~~vkL~DFG 247 (429)
T 3kvw_A 173 HICMTFELLS-MNLYELIKKNKF-QGFSLPLVRKFAHSILQCLDALHKN---RIIHCDLKPENILLKQQGRSGIKVIDFG 247 (429)
T ss_dssp EEEEEECCCC-CBHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHHHH---TEECSCCSGGGEEESSTTSCCEEECCCT
T ss_pred eEEEEEeccC-CCHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEccCCCcceEEeecc
Confidence 9999999997 599999987542 3489999999999999999999999 9999999999999999887 9999999
Q ss_pred ceeecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCccc
Q 005864 553 IAKFLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFI 610 (673)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~ 610 (673)
++...... .....||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus 248 ~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~ 302 (429)
T 3kvw_A 248 SSCYEHQR---VYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGE 302 (429)
T ss_dssp TCEETTCC---CCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred cceecCCc---ccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCC
Confidence 99865432 23467899999999999999999999999999999999999998643
No 215
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=100.00 E-value=1.1e-39 Score=340.26 Aligned_cols=259 Identities=23% Similarity=0.335 Sum_probs=200.4
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecC-----C
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHP-----R 474 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-----~ 474 (673)
.++|++.+.||+|+||.||+|... +++.||||++... ......+.+.+|++++.+++||||+++++++... .
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 103 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPF--EHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMK 103 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCT--TCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCC
T ss_pred cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccc--cCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccc
Confidence 357999999999999999999765 6889999998753 2333457889999999999999999999999654 3
Q ss_pred eeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccce
Q 005864 475 HSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIA 554 (673)
Q Consensus 475 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~ 554 (673)
..++|+||+++ +|.+++... .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 104 ~~~iv~e~~~~-~L~~~l~~~----~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a 175 (364)
T 3qyz_A 104 DVYIVQDLMET-DLYKLLKTQ----HLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGLA 175 (364)
T ss_dssp CEEEEEECCSE-EHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred eEEEEEcccCc-CHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChHhEEECCCCCEEEEeCcce
Confidence 67999999985 999999764 388999999999999999999999 9999999999999999999999999999
Q ss_pred eecCCCCC---Cceeccccccccccccccc-CCcCcchhHHHHHHHHHHHHhCCCCCccccccccccccc-------ccc
Q 005864 555 KFLKPGSS---NWTEFAGTFGYVAPELAYT-MKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNM-------NLS 623 (673)
Q Consensus 555 ~~~~~~~~---~~~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~-------~~~ 623 (673)
........ ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||......+...... ...
T Consensus 176 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~ 255 (364)
T 3qyz_A 176 RVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQED 255 (364)
T ss_dssp EECCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHHHHHHCSCCHHH
T ss_pred EecCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHhCCCCHHH
Confidence 87654322 1244578999999998654 458999999999999999999999997543221110000 000
Q ss_pred ccc--------c---cCCCCCCC-CcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 624 LNE--------I---LDPRLPLP-SRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 624 ~~~--------~---~~~~~~~~-~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
... . .......+ .......+.++.+++.+||+.||++|||++|+++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 313 (364)
T 3qyz_A 256 LNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALA 313 (364)
T ss_dssp HHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 000 0 00000000 0001122356889999999999999999999985
No 216
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=100.00 E-value=1.9e-39 Score=334.22 Aligned_cols=252 Identities=21% Similarity=0.306 Sum_probs=173.8
Q ss_pred hcCCCccc-eeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeec----CC
Q 005864 401 TKNFDAEQ-CIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSH----PR 474 (673)
Q Consensus 401 ~~~~~~~~-~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~----~~ 474 (673)
.++|.+.+ .||+|+||+||+|... +|+.||||++.... ...+ +....+..++||||+++++++.. ..
T Consensus 27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~---e~~~~~~~~~h~~i~~~~~~~~~~~~~~~ 99 (336)
T 3fhr_A 27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSP----KARQ---EVDHHWQASGGPHIVCILDVYENMHHGKR 99 (336)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSH----HHHH---HHHHHHHHTTSTTBCCEEEEEEEEETTEE
T ss_pred cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcH----HHHH---HHHHHHHhcCCCChHHHHHHHhhccCCCc
Confidence 35788854 6999999999999776 69999999986431 1122 22334566799999999999875 45
Q ss_pred eeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCC---CCceEEecc
Q 005864 475 HSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSS---EYEARVSDF 551 (673)
Q Consensus 475 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~---~~~~kl~Df 551 (673)
..++||||+++|+|.+++..... ..+++.++..++.|++.||+|||+. +|+||||||+||+++. ++.+||+||
T Consensus 100 ~~~lv~e~~~gg~L~~~l~~~~~-~~l~~~~~~~i~~ql~~~l~~LH~~---~ivH~dlkp~NIll~~~~~~~~~kl~Df 175 (336)
T 3fhr_A 100 CLLIIMECMEGGELFSRIQERGD-QAFTEREAAEIMRDIGTAIQFLHSH---NIAHRDVKPENLLYTSKEKDAVLKLTDF 175 (336)
T ss_dssp EEEEEEECCTTEEHHHHHHTC-C-CCCBHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCC
T ss_pred eEEEEEeccCCCCHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEEecCCCceEEEecc
Confidence 58999999999999999987543 4689999999999999999999999 9999999999999986 455999999
Q ss_pred cceeecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCC
Q 005864 552 GIAKFLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPR 631 (673)
Q Consensus 552 g~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (673)
|++...... ......+|+.|+|||++.+..++.++||||||+++|||++|+.||......... ......+....
T Consensus 176 g~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~----~~~~~~~~~~~ 249 (336)
T 3fhr_A 176 GFAKETTQN--ALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAIS----PGMKRRIRLGQ 249 (336)
T ss_dssp TTCEEC------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC------------------------
T ss_pred ccceecccc--ccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhh----hhHHHhhhccc
Confidence 999876432 234457899999999998889999999999999999999999998643221110 00111111122
Q ss_pred CCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 632 LPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 632 ~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
...+...+...+.++.+++.+||+.||++|||++|+++
T Consensus 250 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 287 (336)
T 3fhr_A 250 YGFPNPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMN 287 (336)
T ss_dssp -CCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred cccCchhhccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 22222222334556899999999999999999999986
No 217
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=100.00 E-value=5.2e-40 Score=336.65 Aligned_cols=255 Identities=21% Similarity=0.335 Sum_probs=198.4
Q ss_pred HhcCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEE
Q 005864 400 ATKNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 400 ~~~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 479 (673)
..++|++.+.||+|+||+||+|.... .||+|+++..... ....+.+.+|+.++++++||||+++++++.+++..++|
T Consensus 31 ~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv 107 (319)
T 2y4i_B 31 PFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDN-EDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAII 107 (319)
T ss_dssp CCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCC-CCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEE
T ss_pred CHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCC-HHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEE
Confidence 35678999999999999999998753 5999998754322 22345677899999999999999999999999999999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCC
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKP 559 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~ 559 (673)
|||+++++|.+++...+ ..+++..+..++.|++.||+|||+. +++||||||+||+++ ++.+||+|||++.....
T Consensus 108 ~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~ 181 (319)
T 2y4i_B 108 TSLCKGRTLYSVVRDAK--IVLDVNKTRQIAQEIVKGMGYLHAK---GILHKDLKSKNVFYD-NGKVVITDFGLFSISGV 181 (319)
T ss_dssp CBCCCSEEHHHHTTSSC--CCCCSHHHHHHHHHHHHHHHHHHHT---TCCCCCCCSTTEEEC---CCEECCCSCCC----
T ss_pred eecccCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChhhEEEe-CCCEEEeecCCcccccc
Confidence 99999999999998653 4588899999999999999999999 999999999999998 67999999999876532
Q ss_pred C-----CCCceeccccccccccccccc---------CCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccc
Q 005864 560 G-----SSNWTEFAGTFGYVAPELAYT---------MKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLN 625 (673)
Q Consensus 560 ~-----~~~~~~~~~~~~y~aPE~~~~---------~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~ 625 (673)
. ........|++.|+|||.+.. ..++.++||||||+++|||++|+.||......... ....
T Consensus 182 ~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~-----~~~~ 256 (319)
T 2y4i_B 182 LQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAII-----WQMG 256 (319)
T ss_dssp ------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHHHH-----HHHH
T ss_pred ccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHH-----HHhc
Confidence 1 122234568999999999864 45788999999999999999999999743221110 0000
Q ss_pred cccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhhC
Q 005864 626 EILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLCK 673 (673)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~~ 673 (673)
....+.... ...+.++.+++.+||+.||++|||+++++++|++
T Consensus 257 ~~~~~~~~~-----~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~ 299 (319)
T 2y4i_B 257 TGMKPNLSQ-----IGMGKEISDILLFCWAFEQEERPTFTKLMDMLEK 299 (319)
T ss_dssp TTCCCCCCC-----SSCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTT
T ss_pred cCCCCCCCc-----CCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHH
Confidence 111111110 0122348899999999999999999999999864
No 218
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=100.00 E-value=1.4e-39 Score=328.59 Aligned_cols=254 Identities=22% Similarity=0.342 Sum_probs=187.2
Q ss_pred hcCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 479 (673)
.++|++.+.||+|+||+||+|+. .+|+.||+|++...... ....+.+.++...++.++||||+++++++.+++..++|
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv 84 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNS-QEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWIC 84 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CH-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEE
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCc-HHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEE
Confidence 36789999999999999999976 47999999998764322 23344555666668888999999999999999999999
Q ss_pred EecccCCChHHHHhcC-CCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecC
Q 005864 480 YECLERGSLAEILSND-GSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLK 558 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~ 558 (673)
|||+++ +|.+++... .....+++..+..++.|++.||+|||+++ +++||||||+||+++.++.+||+|||++....
T Consensus 85 ~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 161 (290)
T 3fme_A 85 MELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKMCDFGISGYLV 161 (290)
T ss_dssp EECCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHS--CCCCCCCSGGGCEECTTCCEEBCCC-------
T ss_pred Eehhcc-chHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeecCCccccc
Confidence 999985 888877542 12246899999999999999999999852 89999999999999999999999999998764
Q ss_pred CCCCCceeccccccccccccc----ccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCC-CCC
Q 005864 559 PGSSNWTEFAGTFGYVAPELA----YTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDP-RLP 633 (673)
Q Consensus 559 ~~~~~~~~~~~~~~y~aPE~~----~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 633 (673)
... ......|++.|+|||.+ .+..++.++||||+|+++|||++|+.||+..... .......... ...
T Consensus 162 ~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~-------~~~~~~~~~~~~~~ 233 (290)
T 3fme_A 162 DDV-AKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTP-------FQQLKQVVEEPSPQ 233 (290)
T ss_dssp ---------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCH-------HHHHHHHHHSCCCC
T ss_pred ccc-cccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCch-------HHHHHHHhccCCCC
Confidence 432 22335689999999996 5667899999999999999999999998732111 0011111111 111
Q ss_pred CCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 634 LPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 634 ~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.+. ...+.++.+++.+||+.||++|||++|+++
T Consensus 234 ~~~---~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~ 266 (290)
T 3fme_A 234 LPA---DKFSAEFVDFTSQCLKKNSKERPTYPELMQ 266 (290)
T ss_dssp CCT---TTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred ccc---ccCCHHHHHHHHHHhhcChhhCcCHHHHHh
Confidence 111 122345889999999999999999999975
No 219
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=100.00 E-value=3e-39 Score=332.67 Aligned_cols=252 Identities=22% Similarity=0.303 Sum_probs=197.1
Q ss_pred cCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccC-CCcccceeeeeec--CCeee
Q 005864 402 KNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIR-HRNIVKFYGFCSH--PRHSF 477 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~--~~~~~ 477 (673)
++|++.+.||+|+||+||+|.. .+|+.||||+++.. ..+.+.+|+.++++++ ||||+++++++.+ ....+
T Consensus 36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~------~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~ 109 (330)
T 3nsz_A 36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV------KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPA 109 (330)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC------CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEE
T ss_pred CceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc------chHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceE
Confidence 5789999999999999999976 57999999998643 2467889999999997 9999999999987 56789
Q ss_pred EEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCC-ceEEecccceee
Q 005864 478 LVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEY-EARVSDFGIAKF 556 (673)
Q Consensus 478 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~-~~kl~Dfg~~~~ 556 (673)
+||||+++++|.+++.. +++..+..++.|++.||+|||+. +|+||||||+||+++.++ .+||+|||+++.
T Consensus 110 lv~e~~~~~~l~~~~~~------~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~ 180 (330)
T 3nsz_A 110 LVFEHVNNTDFKQLYQT------LTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEF 180 (330)
T ss_dssp EEEECCCCCCHHHHGGG------CCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred EEEeccCchhHHHHHHh------CCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEcCCCCEEEEEeCCCceE
Confidence 99999999999999853 77888999999999999999999 999999999999999776 899999999987
Q ss_pred cCCCCCCceeccccccccccccccc-CCcCcchhHHHHHHHHHHHHhCCCCCcccccccc--------------------
Q 005864 557 LKPGSSNWTEFAGTFGYVAPELAYT-MKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSS-------------------- 615 (673)
Q Consensus 557 ~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~-------------------- 615 (673)
...... .....++..|+|||.+.+ ..++.++||||+||++|||++|+.||........
T Consensus 181 ~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 259 (330)
T 3nsz_A 181 YHPGQE-YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDK 259 (330)
T ss_dssp CCTTCC-CCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred cCCCCc-cccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHH
Confidence 754432 344678999999999877 6689999999999999999999999842111000
Q ss_pred cccccccccccccCCCCC------CCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 616 SSSNMNLSLNEILDPRLP------LPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
..........+....... .........+.++.+++.+||+.||++|||++|+++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~ 319 (330)
T 3nsz_A 260 YNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME 319 (330)
T ss_dssp TTCCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred hccccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence 000000000000000000 000111123456899999999999999999999986
No 220
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.7e-39 Score=346.88 Aligned_cols=296 Identities=22% Similarity=0.213 Sum_probs=143.8
Q ss_pred CCccccCCCcccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccc
Q 005864 2 NHLSGAIPPSVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNIS 81 (673)
Q Consensus 2 n~i~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~ 81 (673)
|+|++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|+++...+..|.++++|++|+|++|++..+.+
T Consensus 42 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~ 121 (477)
T 2id5_A 42 NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD 121 (477)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECT
T ss_pred CccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCCh
Confidence 34444444444444444444444444444444444444444444444444443333344444444444444444444444
Q ss_pred cccCCCCCccEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccccCCccccCCCC
Q 005864 82 EVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKS 161 (673)
Q Consensus 82 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~ 161 (673)
..|..+++|++|+|++|.+....+..|.++++|+.|+|++|.++...+..+..+++|+.|++++|.+.+..+..+..+++
T Consensus 122 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~ 201 (477)
T 2id5_A 122 YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201 (477)
T ss_dssp TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTT
T ss_pred hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcc
Confidence 44444444444444444444444444444444444444444444433334444444444444444444444444444444
Q ss_pred CCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecC
Q 005864 162 LNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSH 241 (673)
Q Consensus 162 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~ 241 (673)
|+.|++++|.+.+.++.......+|+.|++++|.+++..+..+..+++|+.|+|++|.+++..+..|..+++|+.|+|++
T Consensus 202 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (477)
T 2id5_A 202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281 (477)
T ss_dssp CCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCS
T ss_pred cceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCC
Confidence 55555444444433333333333455555555555432223445555555555555555554444455555555555555
Q ss_pred CcCCCCCcccccCCCcccEEEecCccccccCccccccCCCccEEEccCccccCCCC
Q 005864 242 NFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLGLIP 297 (673)
Q Consensus 242 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~ 297 (673)
|.+.+..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.+.++
T Consensus 282 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 282 GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp SCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred CccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 55554445555555555555555555555544455555555555555555554443
No 221
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=100.00 E-value=1.2e-39 Score=338.90 Aligned_cols=256 Identities=20% Similarity=0.290 Sum_probs=182.4
Q ss_pred cCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecC------C
Q 005864 402 KNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHP------R 474 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~------~ 474 (673)
++|++.+.||+|+||.||+|.. .+|+.||||++.... ......+.+.+|+.+++.++||||+++++++... .
T Consensus 29 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~ 107 (367)
T 2fst_X 29 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF-QSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN 107 (367)
T ss_dssp TTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTT-SSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccc-cCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence 6799999999999999999975 479999999986543 2233467788999999999999999999998654 5
Q ss_pred eeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccce
Q 005864 475 HSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIA 554 (673)
Q Consensus 475 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~ 554 (673)
..++|+||+ +++|.+++.. ..+++..+..++.||++||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 108 ~~~lv~e~~-~~~L~~~~~~----~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kL~DFG~a 179 (367)
T 2fst_X 108 DVYLVTHLM-GADLNNIVKC----QKLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLA 179 (367)
T ss_dssp CCEEEEECC-CEECC---------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECC----
T ss_pred eEEEEeccc-CCCHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHhhEEECCCCCEEEeecccc
Confidence 679999998 6799998875 3488999999999999999999999 9999999999999999999999999999
Q ss_pred eecCCCCCCceeccccccccccccccc-CCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccc-------cccc---
Q 005864 555 KFLKPGSSNWTEFAGTFGYVAPELAYT-MKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSN-------MNLS--- 623 (673)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~-------~~~~--- 623 (673)
+.... ......||+.|+|||.+.+ ..++.++||||+||++|||++|+.||......+..... ....
T Consensus 180 ~~~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~ 256 (367)
T 2fst_X 180 RHTAD---EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKK 256 (367)
T ss_dssp --------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHTT
T ss_pred ccccc---cCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHH
Confidence 86542 2344678999999999876 67899999999999999999999999754322110000 0000
Q ss_pred -----cccccCCCCCCCCcch----HHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 624 -----LNEILDPRLPLPSRNI----QDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 624 -----~~~~~~~~~~~~~~~~----~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
....+..-...+.... ...+..+.+++.+||+.||++|||++|+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~ 311 (367)
T 2fst_X 257 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA 311 (367)
T ss_dssp CCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred hhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhc
Confidence 0000000000011111 112356889999999999999999999985
No 222
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=100.00 E-value=7.6e-40 Score=344.37 Aligned_cols=257 Identities=21% Similarity=0.249 Sum_probs=192.9
Q ss_pred cCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCC------e
Q 005864 402 KNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPR------H 475 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~------~ 475 (673)
.+|.+.+.||+|+||+||+|+...+..||+|++..... ...+|+++++.++||||+++++++...+ .
T Consensus 40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~-------~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~ 112 (394)
T 4e7w_A 40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR-------FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVF 112 (394)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT-------SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEE
T ss_pred ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc-------hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceE
Confidence 46889999999999999999988777799998864321 1236999999999999999999995433 3
Q ss_pred eeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeC-CCCceEEecccce
Q 005864 476 SFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLS-SEYEARVSDFGIA 554 (673)
Q Consensus 476 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~-~~~~~kl~Dfg~~ 554 (673)
.++||||++++.+............+++..+..++.|+++||+|||+. +|+||||||+||+++ .++.+||+|||++
T Consensus 113 ~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~kL~DFG~a 189 (394)
T 4e7w_A 113 LNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSI---GICHRDIKPQNLLLDPPSGVLKLIDFGSA 189 (394)
T ss_dssp EEEEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTC
T ss_pred EEEEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEcCCCCcEEEeeCCCc
Confidence 789999999854444332222224588999999999999999999999 999999999999999 7899999999999
Q ss_pred eecCCCCCCceecccccccccccccccC-CcCcchhHHHHHHHHHHHHhCCCCCccccccccccccc-------c----c
Q 005864 555 KFLKPGSSNWTEFAGTFGYVAPELAYTM-KVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNM-------N----L 622 (673)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~-------~----~ 622 (673)
+....... .....+|+.|+|||.+.+. .++.++||||+||++|||++|+.||......+...... . .
T Consensus 190 ~~~~~~~~-~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~ 268 (394)
T 4e7w_A 190 KILIAGEP-NVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQIKT 268 (394)
T ss_dssp EECCTTCC-CCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHH
T ss_pred ccccCCCC-CcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHh
Confidence 87754332 3446789999999998764 58999999999999999999999997543221100000 0 0
Q ss_pred ccccccCCCCCCC-Ccch-----HHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 623 SLNEILDPRLPLP-SRNI-----QDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 623 ~~~~~~~~~~~~~-~~~~-----~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.........++.. ...+ ...+.++.+++.+||+.||++|||+.|+++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 321 (394)
T 4e7w_A 269 MNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALC 321 (394)
T ss_dssp HCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred hChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhc
Confidence 0000111111110 0001 113456899999999999999999999985
No 223
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=100.00 E-value=2.3e-39 Score=346.96 Aligned_cols=256 Identities=18% Similarity=0.260 Sum_probs=201.4
Q ss_pred hcCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCC-CcccceeeeeecCCeeeE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRH-RNIVKFYGFCSHPRHSFL 478 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h-~niv~l~~~~~~~~~~~l 478 (673)
.++|++.+.||+|+||.||+|.+ .+|+.||||++..... ...+.+|++++..++| +++..+..++...+..++
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~-----~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~l 80 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK-----HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVL 80 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS-----SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc-----cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEE
Confidence 36799999999999999999976 5799999998764322 2357789999999976 556666667778888999
Q ss_pred EEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEe---CCCCceEEeccccee
Q 005864 479 VYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLL---SSEYEARVSDFGIAK 555 (673)
Q Consensus 479 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill---~~~~~~kl~Dfg~~~ 555 (673)
||||+ +++|.+++.... ..+++..++.|+.||+.||+|||++ +|+||||||+|||+ +.++.+||+|||+++
T Consensus 81 vme~~-g~sL~~ll~~~~--~~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~ 154 (483)
T 3sv0_A 81 VMDLL-GPSLEDLFNFCS--RKLSLKTVLMLADQMINRVEFVHSK---SFLHRDIKPDNFLMGLGRRANQVYIIDFGLAK 154 (483)
T ss_dssp EEECC-CCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTTCEEECCCTTCE
T ss_pred EEECC-CCCHHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCcceEEEecCCCCCeEEEEeCCcce
Confidence 99999 899999998643 4589999999999999999999999 99999999999999 578899999999999
Q ss_pred ecCCCCCC-------ceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCccccccccccccccccccccc
Q 005864 556 FLKPGSSN-------WTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEIL 628 (673)
Q Consensus 556 ~~~~~~~~-------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~ 628 (673)
.+...... .....||+.|+|||++.+..++.++|||||||++|||++|+.||........ ......+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~-----~~~~~~i~ 229 (483)
T 3sv0_A 155 KYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTK-----KQKYEKIS 229 (483)
T ss_dssp ECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSH-----HHHHHHHH
T ss_pred eccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhH-----HHHHHHHh
Confidence 87544321 1256799999999999999999999999999999999999999975322110 00001111
Q ss_pred CCCCCCCC-cchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 629 DPRLPLPS-RNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 629 ~~~~~~~~-~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
........ ......+.++.+++..||+.||++||++++|++.|+
T Consensus 230 ~~~~~~~~~~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~ 274 (483)
T 3sv0_A 230 EKKVATSIEALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFR 274 (483)
T ss_dssp HHHHHSCHHHHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHH
T ss_pred hccccccHHHHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHH
Confidence 00000000 000122346899999999999999999999999886
No 224
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=100.00 E-value=2.2e-39 Score=333.11 Aligned_cols=263 Identities=20% Similarity=0.305 Sum_probs=199.4
Q ss_pred HhcCCCccceeccCCcEEEEEEEe--CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhcc---CCCcccceeeeee---
Q 005864 400 ATKNFDAEQCIGIGGQASVYRGEL--PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEI---RHRNIVKFYGFCS--- 471 (673)
Q Consensus 400 ~~~~~~~~~~ig~G~~g~vy~~~~--~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l---~h~niv~l~~~~~--- 471 (673)
+.++|++.+.||+|+||+||+|+. .+|+.||+|++....... .....+.+|+.+++.+ +||||+++++++.
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~ 87 (326)
T 1blx_A 9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEE-GMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSR 87 (326)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTT-SCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEE
T ss_pred chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccc-cCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecc
Confidence 457899999999999999999987 468899999987543221 1123455677766666 8999999999987
Q ss_pred --cCCeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEe
Q 005864 472 --HPRHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVS 549 (673)
Q Consensus 472 --~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~ 549 (673)
.....++||||++ |+|.+++..... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+
T Consensus 88 ~~~~~~~~lv~e~~~-~~L~~~l~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~---gi~H~dlkp~Nili~~~~~~kl~ 162 (326)
T 1blx_A 88 TDRETKLTLVFEHVD-QDLTTYLDKVPE-PGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLA 162 (326)
T ss_dssp CSSEEEEEEEEECCS-CBHHHHHHHSCT-TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEEC
T ss_pred cCCCceEEEEEecCC-CCHHHHHHhccc-CCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHHHeEEcCCCCEEEe
Confidence 5567899999998 599999987542 3488999999999999999999999 99999999999999999999999
Q ss_pred cccceeecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccc-------ccc
Q 005864 550 DFGIAKFLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSN-------MNL 622 (673)
Q Consensus 550 Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~-------~~~ 622 (673)
|||++...... .......+++.|+|||.+.+..++.++||||||+++|||++|+.||......+..... ...
T Consensus 163 Dfg~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~ 241 (326)
T 1blx_A 163 DFGLARIYSFQ-MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEE 241 (326)
T ss_dssp SCCSCCCCCGG-GGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGG
T ss_pred cCcccccccCC-CCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCcc
Confidence 99999765422 2234467899999999999989999999999999999999999999753321110000 000
Q ss_pred cc-------ccccCCC-CCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 623 SL-------NEILDPR-LPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 623 ~~-------~~~~~~~-~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.+ ...+... ...........+..+.+++.+||+.||++|||+.|+++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 296 (326)
T 1blx_A 242 DWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS 296 (326)
T ss_dssp GSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred cCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 00 0000000 00000111223456889999999999999999999985
No 225
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=100.00 E-value=5.3e-39 Score=334.07 Aligned_cols=259 Identities=22% Similarity=0.309 Sum_probs=198.4
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecC-----C
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHP-----R 474 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-----~ 474 (673)
.++|.+.+.||+|+||+||+|... +|+.||||++... ........+.+|+.++++++||||+++++++..+ .
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 87 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPF--DKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFN 87 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC--SSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCC
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeeccc--ccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccc
Confidence 357889999999999999999775 6899999998643 2333466788999999999999999999998654 6
Q ss_pred eeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccce
Q 005864 475 HSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIA 554 (673)
Q Consensus 475 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~ 554 (673)
..++||||++ |+|.+++... .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 88 ~~~lv~e~~~-~~L~~~~~~~----~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a 159 (353)
T 2b9h_A 88 EVYIIQELMQ-TDLHRVISTQ----MLSDDHIQYFIYQTLRAVKVLHGS---NVIHRDLKPSNLLINSNCDLKVCDFGLA 159 (353)
T ss_dssp CEEEEECCCS-EEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTC
T ss_pred eEEEEEeccC-ccHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEcCCCcEEEEecccc
Confidence 7899999998 5999998763 488999999999999999999999 9999999999999999999999999999
Q ss_pred eecCCCCCC----------ceeccccccccccccccc-CCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccc----
Q 005864 555 KFLKPGSSN----------WTEFAGTFGYVAPELAYT-MKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSN---- 619 (673)
Q Consensus 555 ~~~~~~~~~----------~~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~---- 619 (673)
......... .....||+.|+|||.+.+ ..++.++|||||||++|||++|+.||............
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~ 239 (353)
T 2b9h_A 160 RIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGII 239 (353)
T ss_dssp EECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHH
T ss_pred cccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHh
Confidence 876532211 123468999999998764 67899999999999999999999999754321100000
Q ss_pred ---c-c--------cccccccCCCCCCCCc----chHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 620 ---M-N--------LSLNEILDPRLPLPSR----NIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 620 ---~-~--------~~~~~~~~~~~~~~~~----~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
. . ....+........+.. .....+.++.+++.+||+.||++|||++|+++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 305 (353)
T 2b9h_A 240 GTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALE 305 (353)
T ss_dssp CCCCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCCchhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 0 0 0000000000000000 01123456889999999999999999999986
No 226
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-38 Score=364.69 Aligned_cols=313 Identities=35% Similarity=0.558 Sum_probs=231.3
Q ss_pred CCccccCCCcccCCCCCCEEEeeCCccccCCCcc-ccCCCCCCEEEcccCccccccCccccCCC----------------
Q 005864 2 NHLSGAIPPSVGNFTNLKGLYLYSNSLSGSVPGE-IGNLMQLTNLEIDNNQLFGQIPRSLRNLA---------------- 64 (673)
Q Consensus 2 n~i~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~l~~l~---------------- 64 (673)
|++++.+|..|+++++|++|+|++|.+++.+|.. |.++++|++|+|++|.+++.+|..+..++
T Consensus 304 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~ 383 (768)
T 3rgz_A 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383 (768)
T ss_dssp SEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEE
T ss_pred CcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCC
Confidence 6677778888888888888888888877666655 77777777777777777766666555544
Q ss_pred -----------CCcEEEccCcccccccccccCCCCCccEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhh
Q 005864 65 -----------SLNRVHLEQNHLTGNISEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIG 133 (673)
Q Consensus 65 -----------~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 133 (673)
+|++|++++|++++..+..|..+++|++|+|++|.+++..+..+..+++|+.|++++|.+++..|..+.
T Consensus 384 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 463 (768)
T 3rgz_A 384 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463 (768)
T ss_dssp CCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc
Confidence 455555555555555666677777777777777777777777777777777777777777777777777
Q ss_pred ccccccccccccccccccCCccccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEE
Q 005864 134 KLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYL 213 (673)
Q Consensus 134 ~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 213 (673)
.+++|++|++++|++++..|..+..+++|++|+|++|++++.+|.++..+++|+.|++++|.+++.+|..+..+++|+.|
T Consensus 464 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 543 (768)
T 3rgz_A 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 543 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEE
T ss_pred CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEE
Confidence 77777777777777777777777777778888888887777777777777788888888888777777777778888888
Q ss_pred EccCCcCccCCchhhh----------------------------------------------------------------
Q 005864 214 NLSNNQFRKEFPVELE---------------------------------------------------------------- 229 (673)
Q Consensus 214 ~l~~n~l~~~~~~~~~---------------------------------------------------------------- 229 (673)
++++|++++.+|..+.
T Consensus 544 ~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~ 623 (768)
T 3rgz_A 544 DLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623 (768)
T ss_dssp ECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEE
T ss_pred ECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceeccc
Confidence 8888877765554332
Q ss_pred ------cccCCCeEeecCCcCCCCCcccccCCCcccEEEecCccccccCccccccCCCccEEEccCccccCCCCCCcc-c
Q 005864 230 ------KLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLGLIPNSTG-F 302 (673)
Q Consensus 230 ------~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~~~~~-~ 302 (673)
.+++|+.|+|++|++++.+|..++.+++|+.|+|++|++++.+|..+..+++|+.|||++|+++|.+|.... .
T Consensus 624 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l 703 (768)
T 3rgz_A 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703 (768)
T ss_dssp CCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred CchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCC
Confidence 245677888888888888888888888888888888888888888888888888888888888888876432 3
Q ss_pred ccCccccccCCc
Q 005864 303 QYDPIQALRGNR 314 (673)
Q Consensus 303 ~~~~~~~~~~n~ 314 (673)
.......+..|+
T Consensus 704 ~~L~~L~ls~N~ 715 (768)
T 3rgz_A 704 TMLTEIDLSNNN 715 (768)
T ss_dssp CCCSEEECCSSE
T ss_pred CCCCEEECcCCc
Confidence 334444555543
No 227
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=6.6e-40 Score=344.23 Aligned_cols=259 Identities=21% Similarity=0.225 Sum_probs=194.0
Q ss_pred HHhcCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecC----
Q 005864 399 RATKNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHP---- 473 (673)
Q Consensus 399 ~~~~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~---- 473 (673)
...++|++.+.||+|+||+||+|.. .+|+.||||++..... ...+|+++++.++||||+++++++...
T Consensus 4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~-------~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~ 76 (383)
T 3eb0_A 4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR-------YKNRELDIMKVLDHVNIIKLVDYFYTTGDEE 76 (383)
T ss_dssp --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT-------SCCHHHHHHTTCCCTTBCCEEEEEEEC----
T ss_pred cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc-------hHHHHHHHHHHcCCCCccchhheeeecCccc
Confidence 4557899999999999999999976 5799999999865421 223699999999999999999998442
Q ss_pred ----------------------------------CeeeEEEecccCCChHHHHhcC-CCCccchHHHHHHHHHHHHHHHH
Q 005864 474 ----------------------------------RHSFLVYECLERGSLAEILSND-GSIKEFSWIVRTNVIKSVANALS 518 (673)
Q Consensus 474 ----------------------------------~~~~lv~e~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~l~ 518 (673)
...++||||+++ +|.+.+... .....+++..+..++.|+++||+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~ 155 (383)
T 3eb0_A 77 PKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPD-TLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVG 155 (383)
T ss_dssp ---------------------------------CCEEEEEECCCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccCCCceEEEEEEecCCc-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 347899999995 888777542 12245899999999999999999
Q ss_pred HHhhcCCCCeEEecCCCCCeEeC-CCCceEEecccceeecCCCCCCceecccccccccccccccC-CcCcchhHHHHHHH
Q 005864 519 YMHHDCFPPIVHRDISSKNVLLS-SEYEARVSDFGIAKFLKPGSSNWTEFAGTFGYVAPELAYTM-KVTEKCDVYSFGVL 596 (673)
Q Consensus 519 ~LH~~~~~~ivH~dlk~~Nill~-~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~i 596 (673)
|||+. +|+||||||+||+++ .++.+||+|||+++...... ......+|+.|+|||.+.+. .++.++||||+||+
T Consensus 156 ~LH~~---gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~i 231 (383)
T 3eb0_A 156 FIHSL---GICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSE-PSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCV 231 (383)
T ss_dssp HHHTT---TEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTS-CCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHH
T ss_pred HHHHC---cCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCC-CCcCcccCCCccCHHHhcCCCCCCcchhhhhHHHH
Confidence 99999 999999999999997 68899999999998775433 23445789999999998765 48999999999999
Q ss_pred HHHHHhCCCCCccccccccccccc-------c-------cccccccCCCCCCCC---cchHHHHHHHHHHHHHcccCCCC
Q 005864 597 ALEVIKGKHPRDFISLLSSSSSNM-------N-------LSLNEILDPRLPLPS---RNIQDKLISILEVALLCLEESPE 659 (673)
Q Consensus 597 l~el~~g~~p~~~~~~~~~~~~~~-------~-------~~~~~~~~~~~~~~~---~~~~~~~~~l~~li~~cl~~dp~ 659 (673)
+|||++|+.||......+...... . ....+...+...... ......+.++.+++.+||+.||+
T Consensus 232 l~ell~g~~pf~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~ 311 (383)
T 3eb0_A 232 FGELILGKPLFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEPD 311 (383)
T ss_dssp HHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGG
T ss_pred HHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCChh
Confidence 999999999997543221110000 0 000000011111000 00011234589999999999999
Q ss_pred CCCCHHHHHH
Q 005864 660 SRPTMQTVCQ 669 (673)
Q Consensus 660 ~Rps~~~v~~ 669 (673)
+|||+.|+++
T Consensus 312 ~R~t~~e~l~ 321 (383)
T 3eb0_A 312 LRINPYEAMA 321 (383)
T ss_dssp GSCCHHHHHT
T ss_pred hCCCHHHHhc
Confidence 9999999984
No 228
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=100.00 E-value=4.1e-39 Score=328.85 Aligned_cols=250 Identities=23% Similarity=0.356 Sum_probs=196.7
Q ss_pred HhcCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccC--CCcccceeeeeecCCeee
Q 005864 400 ATKNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIR--HRNIVKFYGFCSHPRHSF 477 (673)
Q Consensus 400 ~~~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~--h~niv~l~~~~~~~~~~~ 477 (673)
..++|++.+.||+|+||.||+|...+|+.||||++..... .....+.+.+|+.++.+++ ||||+++++++..++..+
T Consensus 26 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~ 104 (313)
T 3cek_A 26 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEA-DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIY 104 (313)
T ss_dssp TTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSC-CHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEE
T ss_pred ccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccc-cccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEE
Confidence 3567999999999999999999998899999999865432 2335678999999999997 599999999999999999
Q ss_pred EEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeec
Q 005864 478 LVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFL 557 (673)
Q Consensus 478 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~ 557 (673)
+||| +.+++|.+++...+ .+++..+..++.|+++||+|||+. +|+||||||+||++++ +.+||+|||++...
T Consensus 105 lv~e-~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~ 176 (313)
T 3cek_A 105 MVME-CGNIDLNSWLKKKK---SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIVD-GMLKLIDFGIANQM 176 (313)
T ss_dssp EEEC-CCSEEHHHHHHHCS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEET-TEEEECCCSSSCC-
T ss_pred EEEe-cCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEEEC-CeEEEeeccccccc
Confidence 9999 66789999998753 578899999999999999999999 9999999999999974 79999999999876
Q ss_pred CCCCC--Cceeccccccccccccccc-----------CCcCcchhHHHHHHHHHHHHhCCCCCccccccccccccccccc
Q 005864 558 KPGSS--NWTEFAGTFGYVAPELAYT-----------MKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSL 624 (673)
Q Consensus 558 ~~~~~--~~~~~~~~~~y~aPE~~~~-----------~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~ 624 (673)
..... ......|++.|+|||.+.+ ..++.++||||||+++|||++|+.||...... ....
T Consensus 177 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~-------~~~~ 249 (313)
T 3cek_A 177 QPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQ-------ISKL 249 (313)
T ss_dssp -------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSH-------HHHH
T ss_pred cCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHH-------HHHH
Confidence 44322 1234568999999999865 46888999999999999999999998632110 0111
Q ss_pred ccccCCCC--CCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 625 NEILDPRL--PLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 625 ~~~~~~~~--~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
....++.. ..+... +.++.+++.+||+.||++|||++|+++
T Consensus 250 ~~~~~~~~~~~~~~~~----~~~l~~li~~~l~~dp~~Rps~~ell~ 292 (313)
T 3cek_A 250 HAIIDPNHEIEFPDIP----EKDLQDVLKCCLKRDPKQRISIPELLA 292 (313)
T ss_dssp HHHHCTTSCCCCCCCS----CHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHhcccccCCcccc----hHHHHHHHHHHccCCcccCcCHHHHhc
Confidence 12222221 111111 245889999999999999999999985
No 229
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=100.00 E-value=3.4e-39 Score=359.48 Aligned_cols=253 Identities=24% Similarity=0.397 Sum_probs=202.0
Q ss_pred HhcCCCccceeccCCcEEEEEEEeC----CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCe
Q 005864 400 ATKNFDAEQCIGIGGQASVYRGELP----SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRH 475 (673)
Q Consensus 400 ~~~~~~~~~~ig~G~~g~vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~ 475 (673)
..++|++.+.||+|+||+||+|.+. .+..||+|.++.. ......+.+.+|+.++++++||||+++++++. ++.
T Consensus 388 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~ 464 (656)
T 2j0j_A 388 QRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNC--TSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENP 464 (656)
T ss_dssp CGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSST--TCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSS
T ss_pred ccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEeccc--CCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCc
Confidence 3467888999999999999999764 2567999988654 23344678999999999999999999999985 456
Q ss_pred eeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEeccccee
Q 005864 476 SFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAK 555 (673)
Q Consensus 476 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~ 555 (673)
.++||||+++|+|.+++...+ ..+++..+..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++
T Consensus 465 ~~lv~E~~~~g~L~~~l~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDikp~NILl~~~~~vkL~DFG~a~ 539 (656)
T 2j0j_A 465 VWIIMELCTLGELRSFLQVRK--FSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSR 539 (656)
T ss_dssp CEEEEECCTTCBHHHHHHHTT--TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCCCC
T ss_pred eEEEEEcCCCCcHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHhC---CccccccchHhEEEeCCCCEEEEecCCCe
Confidence 899999999999999998653 3588999999999999999999999 99999999999999999999999999998
Q ss_pred ecCCCCC-CceecccccccccccccccCCcCcchhHHHHHHHHHHHHh-CCCCCcccccccccccccccccccccC-CCC
Q 005864 556 FLKPGSS-NWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLSLNEILD-PRL 632 (673)
Q Consensus 556 ~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~ 632 (673)
....... ......+++.|+|||.+.+..++.++||||||+++|||++ |..||......+. ...+.. ...
T Consensus 540 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~--------~~~i~~~~~~ 611 (656)
T 2j0j_A 540 YMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDV--------IGRIENGERL 611 (656)
T ss_dssp SCCC----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHH--------HHHHHHTCCC
T ss_pred ecCCCcceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHHHH--------HHHHHcCCCC
Confidence 7644322 1233456789999999998899999999999999999997 9999874322111 111111 112
Q ss_pred CCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 633 PLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 633 ~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
+.+. ..+..+.+++.+||+.||++|||+.|+++.|+
T Consensus 612 ~~~~----~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~ 647 (656)
T 2j0j_A 612 PMPP----NCPPTLYSLMTKCWAYDPSRRPRFTELKAQLS 647 (656)
T ss_dssp CCCT----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CCCc----cccHHHHHHHHHHcCCChhHCcCHHHHHHHHH
Confidence 2222 22345889999999999999999999999886
No 230
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=100.00 E-value=3e-39 Score=337.57 Aligned_cols=255 Identities=22% Similarity=0.320 Sum_probs=195.7
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCee----
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHS---- 476 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~---- 476 (673)
++|.+.+.||+|+||+||+|... +|+.||||++..... .....+.+.+|+.+++.++||||+++++++...+..
T Consensus 42 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 120 (371)
T 4exu_A 42 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQ-SEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 120 (371)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTS-SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred ccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEeccccc-chhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence 57889999999999999999764 699999999876432 234467889999999999999999999999876654
Q ss_pred --eEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccce
Q 005864 477 --FLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIA 554 (673)
Q Consensus 477 --~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~ 554 (673)
++||||++ ++|.+++.. .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 121 ~~~lv~e~~~-~~l~~~~~~-----~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kL~Dfg~a 191 (371)
T 4exu_A 121 DFYLVMPFMQ-TDLQKIMGM-----EFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGLA 191 (371)
T ss_dssp CCEEEEECCC-EEHHHHTTS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECSTTCC
T ss_pred eEEEEEcccc-ccHHHHhhc-----CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCcCHHHeEECCCCCEEEEecCcc
Confidence 99999998 588888743 388999999999999999999999 9999999999999999999999999999
Q ss_pred eecCCCCCCceeccccccccccccccc-CCcCcchhHHHHHHHHHHHHhCCCCCccccccccccccc-------cccc--
Q 005864 555 KFLKPGSSNWTEFAGTFGYVAPELAYT-MKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNM-------NLSL-- 624 (673)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~-------~~~~-- 624 (673)
+..... .....||+.|+|||.+.+ ..++.++||||+||++|||++|+.||......+...... ....
T Consensus 192 ~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~ 268 (371)
T 4exu_A 192 RHADAE---MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQK 268 (371)
T ss_dssp -----------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTT
T ss_pred cccccC---cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCcHHHHHH
Confidence 865432 344678999999999877 678999999999999999999999997543221100000 0000
Q ss_pred ------ccccCCCCCCCCcch----HHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 625 ------NEILDPRLPLPSRNI----QDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 625 ------~~~~~~~~~~~~~~~----~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
..........+.... ...+.++.+++.+||+.||++|||++|+++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 323 (371)
T 4exu_A 269 LNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT 323 (371)
T ss_dssp CSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred hhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhc
Confidence 000000000000111 122456899999999999999999999985
No 231
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=100.00 E-value=2.4e-39 Score=337.65 Aligned_cols=266 Identities=21% Similarity=0.238 Sum_probs=187.8
Q ss_pred HHHHHHhcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecC
Q 005864 395 EEIIRATKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHP 473 (673)
Q Consensus 395 ~~~~~~~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~ 473 (673)
++.....++|++.+.||+|+||+||+|... +|+.||||++..... ....+.+++..+..++||||+++++++...
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~~~~~~~l~~l~h~niv~~~~~~~~~ 91 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPR----FRNRELQIMQDLAVLHHPNIVQLQSYFYTL 91 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTT----CCCHHHHHHHHHHHHCCTTBCCEEEEEEEE
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCcc----ccHHHHHHHHHHHhcCCCCcccHHHhhhcc
Confidence 455667789999999999999999999774 699999998855322 234566788888999999999999999653
Q ss_pred Ce-------eeEEEecccCCChHHHHhc-CCCCccchHHHHHHHHHHHHHHHHHHh--hcCCCCeEEecCCCCCeEeCC-
Q 005864 474 RH-------SFLVYECLERGSLAEILSN-DGSIKEFSWIVRTNVIKSVANALSYMH--HDCFPPIVHRDISSKNVLLSS- 542 (673)
Q Consensus 474 ~~-------~~lv~e~~~~gsL~~~l~~-~~~~~~l~~~~~~~i~~~i~~~l~~LH--~~~~~~ivH~dlk~~Nill~~- 542 (673)
+. .++||||+++ +|.+.+.. ......+++..+..++.|++.|+.||| +. +|+||||||+||+++.
T Consensus 92 ~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~---~ivH~Dlkp~NIll~~~ 167 (360)
T 3e3p_A 92 GERDRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSV---NVCHRDIKPHNVLVNEA 167 (360)
T ss_dssp CSSCTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTT---CCBCSCCCGGGEEEETT
T ss_pred ccccccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCC---CeecCcCCHHHEEEeCC
Confidence 33 7899999987 55544432 222356888999999999999999999 87 9999999999999997
Q ss_pred CCceEEecccceeecCCCCCCceecccccccccccccccCC-cCcchhHHHHHHHHHHHHhCCCCCccccccccccccc-
Q 005864 543 EYEARVSDFGIAKFLKPGSSNWTEFAGTFGYVAPELAYTMK-VTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNM- 620 (673)
Q Consensus 543 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~- 620 (673)
++.+||+|||++....... ......||+.|+|||++.+.. ++.++|||||||++|||++|+.||.............
T Consensus 168 ~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~ 246 (360)
T 3e3p_A 168 DGTLKLCDFGSAKKLSPSE-PNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVR 246 (360)
T ss_dssp TTEEEECCCTTCBCCCTTS-CCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred CCcEEEeeCCCceecCCCC-CcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHHHHHHHH
Confidence 8999999999998765433 234467899999999986554 8999999999999999999999997533211100000
Q ss_pred ------ccccc---------cccCC-CCCC---CCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 621 ------NLSLN---------EILDP-RLPL---PSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 621 ------~~~~~---------~~~~~-~~~~---~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
...+. ...+. ..+. ........+.++.+++.+||+.||.+|||+.|+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 314 (360)
T 3e3p_A 247 VLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALC 314 (360)
T ss_dssp HHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred HcCCCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhc
Confidence 00000 00000 0000 00000113457999999999999999999999975
No 232
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=100.00 E-value=6e-39 Score=339.46 Aligned_cols=257 Identities=21% Similarity=0.284 Sum_probs=198.7
Q ss_pred cCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccC--------CCcccceeeeee-
Q 005864 402 KNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIR--------HRNIVKFYGFCS- 471 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~--------h~niv~l~~~~~- 471 (673)
++|++.+.||+|+||+||+|+. .+|+.||||++... ....+.+.+|+.+++.++ ||||+++++++.
T Consensus 37 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~ 112 (397)
T 1wak_A 37 GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA----EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKI 112 (397)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC----HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEE
T ss_pred CeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC----CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceee
Confidence 6799999999999999999976 46889999998643 234567889999999996 788999999987
Q ss_pred ---cCCeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCC----
Q 005864 472 ---HPRHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEY---- 544 (673)
Q Consensus 472 ---~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~---- 544 (673)
.....++||||+ ++++.+++.... ...+++..+..++.||+.||+|||+++ +|+||||||+||+++.++
T Consensus 113 ~~~~~~~~~lv~e~~-~~~l~~~~~~~~-~~~~~~~~~~~i~~qi~~aL~~lH~~~--givHrDikp~NIll~~~~~~~~ 188 (397)
T 1wak_A 113 SGVNGTHICMVFEVL-GHHLLKWIIKSN-YQGLPLPCVKKIIQQVLQGLDYLHTKC--RIIHTDIKPENILLSVNEQYIR 188 (397)
T ss_dssp EETTEEEEEEEECCC-CCBHHHHHHHTT-TSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECCCCSGGGEEECCCHHHHH
T ss_pred cCCCCceEEEEEecc-CccHHHHHHhcc-cCCCCHHHHHHHHHHHHHHHHHHHHhC--CEecCCCCHHHeeEeccchhhh
Confidence 556789999999 556766665542 245899999999999999999999963 899999999999999775
Q ss_pred ---------------------------------------------ceEEecccceeecCCCCCCceeccccccccccccc
Q 005864 545 ---------------------------------------------EARVSDFGIAKFLKPGSSNWTEFAGTFGYVAPELA 579 (673)
Q Consensus 545 ---------------------------------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~ 579 (673)
.+||+|||++...... .....||+.|+|||++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~---~~~~~gt~~y~aPE~~ 265 (397)
T 1wak_A 189 RLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH---FTEDIQTRQYRSLEVL 265 (397)
T ss_dssp HHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC---SCSCCSCGGGCCHHHH
T ss_pred hhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc---CccCCCCCcccCChhh
Confidence 7999999999876432 3445789999999999
Q ss_pred ccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccc-------------cc------cccccccCCC-----CC--
Q 005864 580 YTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSN-------------MN------LSLNEILDPR-----LP-- 633 (673)
Q Consensus 580 ~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~-------------~~------~~~~~~~~~~-----~~-- 633 (673)
.+..++.++|||||||++|||++|+.||......+..... .. ....+.+... ..
T Consensus 266 ~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (397)
T 1wak_A 266 IGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKL 345 (397)
T ss_dssp HTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCC
T ss_pred cCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCcccccccccc
Confidence 9999999999999999999999999999743221100000 00 0000000000 00
Q ss_pred C----------CCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 634 L----------PSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 634 ~----------~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
. ........+..+.+++.+||+.||++|||++|+++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 391 (397)
T 1wak_A 346 KPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLR 391 (397)
T ss_dssp CCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred CCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence 0 00123456678999999999999999999999985
No 233
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=100.00 E-value=8.9e-39 Score=330.46 Aligned_cols=256 Identities=19% Similarity=0.281 Sum_probs=200.5
Q ss_pred cCCCccceeccCCcEEEEEEEe--CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCc------ccceeeeeecC
Q 005864 402 KNFDAEQCIGIGGQASVYRGEL--PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRN------IVKFYGFCSHP 473 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~--~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~n------iv~l~~~~~~~ 473 (673)
++|++.+.||+|+||+||+|.. .+|+.||||+++.. ....+.+.+|+.++..++|++ ++++++++...
T Consensus 14 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~----~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~ 89 (339)
T 1z57_A 14 ARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV----DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHH 89 (339)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS----HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEET
T ss_pred CceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC----CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccC
Confidence 5789999999999999999976 36889999998643 223567888999999987664 99999999999
Q ss_pred CeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCC-----------
Q 005864 474 RHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSS----------- 542 (673)
Q Consensus 474 ~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~----------- 542 (673)
+..++||||+ +++|.+++...+. ..+++..+..++.|+++||+|||++ +|+||||||+||+++.
T Consensus 90 ~~~~lv~e~~-~~~l~~~l~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~~~~~ 164 (339)
T 1z57_A 90 GHICIVFELL-GLSTYDFIKENGF-LPFRLDHIRKMAYQICKSVNFLHSN---KLTHTDLKPENILFVQSDYTEAYNPKI 164 (339)
T ss_dssp TEEEEEEECC-CCBHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCCCEEEEEC---
T ss_pred CcEEEEEcCC-CCCHHHHHHhcCC-CCCcHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEeccccccccCCcc
Confidence 9999999999 8899999987642 4588999999999999999999999 9999999999999987
Q ss_pred --------CCceEEecccceeecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCccccccc
Q 005864 543 --------EYEARVSDFGIAKFLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLS 614 (673)
Q Consensus 543 --------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~ 614 (673)
++.+||+|||++...... .....||+.|+|||.+.+..++.++||||||+++|||++|+.||......+
T Consensus 165 ~~~~~~~~~~~~kl~Dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~ 241 (339)
T 1z57_A 165 KRDERTLINPDIKVVDFGSATYDDEH---HSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKE 241 (339)
T ss_dssp -CEEEEESCCCEEECCCSSCEETTSC---CCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHH
T ss_pred ccccccccCCCceEeeCcccccCccc---cccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHH
Confidence 668999999999875432 234578999999999999999999999999999999999999997432211
Q ss_pred ccccc-------ccccc-----cccc-CCCCCC-------------------CCcchHHHHHHHHHHHHHcccCCCCCCC
Q 005864 615 SSSSN-------MNLSL-----NEIL-DPRLPL-------------------PSRNIQDKLISILEVALLCLEESPESRP 662 (673)
Q Consensus 615 ~~~~~-------~~~~~-----~~~~-~~~~~~-------------------~~~~~~~~~~~l~~li~~cl~~dp~~Rp 662 (673)
..... ..... .... ...... ........+.++.+++.+||+.||.+||
T Consensus 242 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rp 321 (339)
T 1z57_A 242 HLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRI 321 (339)
T ss_dssp HHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSC
T ss_pred HHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCccccc
Confidence 00000 00000 0000 000000 0001123456799999999999999999
Q ss_pred CHHHHHH
Q 005864 663 TMQTVCQ 669 (673)
Q Consensus 663 s~~~v~~ 669 (673)
|++|+++
T Consensus 322 t~~ell~ 328 (339)
T 1z57_A 322 TLREALK 328 (339)
T ss_dssp CHHHHTT
T ss_pred CHHHHhc
Confidence 9999975
No 234
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=100.00 E-value=3.5e-39 Score=330.68 Aligned_cols=257 Identities=21% Similarity=0.307 Sum_probs=191.3
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeee---------
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCS--------- 471 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~--------- 471 (673)
++|.+.+.||+|+||.||+|... +|+.||+|++... .....+.+.+|++++++++||||+++++++.
T Consensus 11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 87 (320)
T 2i6l_A 11 SRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLT---DPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDD 87 (320)
T ss_dssp TTEEEEEECC-----CEEEEEETTTTEEEEEEEEECC---SHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC-
T ss_pred CceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecC---ChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccc
Confidence 57889999999999999999876 5899999998653 2345678899999999999999999999873
Q ss_pred -----cCCeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeC-CCCc
Q 005864 472 -----HPRHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLS-SEYE 545 (673)
Q Consensus 472 -----~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~-~~~~ 545 (673)
+....++||||++ |+|.+++... .+++..+..++.|++.||+|||+. +|+||||||+||+++ +++.
T Consensus 88 ~~~~~~~~~~~lv~e~~~-~~L~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~ 159 (320)
T 2i6l_A 88 VGSLTELNSVYIVQEYME-TDLANVLEQG----PLLEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANLFINTEDLV 159 (320)
T ss_dssp ---CCSCSEEEEEEECCS-EEHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTTE
T ss_pred cccccccCceeEEeeccC-CCHHHHhhcC----CccHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCe
Confidence 3467899999998 5999999653 478899999999999999999999 999999999999997 5679
Q ss_pred eEEecccceeecCCCC---CCceeccccccccccccccc-CCcCcchhHHHHHHHHHHHHhCCCCCccccccccccccc-
Q 005864 546 ARVSDFGIAKFLKPGS---SNWTEFAGTFGYVAPELAYT-MKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNM- 620 (673)
Q Consensus 546 ~kl~Dfg~~~~~~~~~---~~~~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~- 620 (673)
+||+|||++....... .......++..|+|||.+.+ ..++.++||||||+++|||++|+.||......+......
T Consensus 160 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~ 239 (320)
T 2i6l_A 160 LKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILE 239 (320)
T ss_dssp EEECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred EEEccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 9999999998764322 12234567899999998765 678999999999999999999999997543221100000
Q ss_pred ------ccccccc-------cCCCCCCCCc----chHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 621 ------NLSLNEI-------LDPRLPLPSR----NIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 621 ------~~~~~~~-------~~~~~~~~~~----~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.....+. .......+.. .....+.++.+++.+||+.||++|||++|+++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 305 (320)
T 2i6l_A 240 SIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALS 305 (320)
T ss_dssp HSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred hcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhC
Confidence 0000000 0000000000 01123456899999999999999999999985
No 235
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=100.00 E-value=2.7e-39 Score=334.36 Aligned_cols=254 Identities=22% Similarity=0.348 Sum_probs=196.7
Q ss_pred hcCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhhHHHHHHHHHHHH-HhccCCCcccceeeeeecCCeeeE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEISVQREFLNEIKA-LTEIRHRNIVKFYGFCSHPRHSFL 478 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~-l~~l~h~niv~l~~~~~~~~~~~l 478 (673)
.++|++.+.||+|+||+||+|.. .+|+.||||++...... ....++..|... ++.++||||+++++++..++..++
T Consensus 50 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~l 127 (340)
T 3an0_A 50 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNS--QEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWI 127 (340)
T ss_dssp SSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCC--HHHHHHHHHHHHHHTTCCCTTTCCEEEEEECSSCEEE
T ss_pred hhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCc--HHHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCCcEEE
Confidence 45788889999999999999976 57999999998764322 234455555555 777899999999999999999999
Q ss_pred EEecccCCChHHHHhcC-CCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeec
Q 005864 479 VYECLERGSLAEILSND-GSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFL 557 (673)
Q Consensus 479 v~e~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~ 557 (673)
||||+++ +|.+++... .....+++..+..++.||+.||+|||++. +|+||||||+||+++.++.+||+|||++...
T Consensus 128 v~e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~--~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~ 204 (340)
T 3an0_A 128 CMELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKMCDFGISGYL 204 (340)
T ss_dssp EECCCSE-EHHHHHHHHHHTSCCCCHHHHHHHHHHHHHHHHHHHHHT--CCCCCSCCSTTEEECSTTCEEECCCSHHHHH
T ss_pred EHHHhhC-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeeCCCceec
Confidence 9999986 999988642 11246899999999999999999999742 8999999999999999999999999999866
Q ss_pred CCCCCCceecccccccccccccc----cCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCC
Q 005864 558 KPGSSNWTEFAGTFGYVAPELAY----TMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLP 633 (673)
Q Consensus 558 ~~~~~~~~~~~~~~~y~aPE~~~----~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (673)
... .......||+.|+|||++. ...++.++|||||||++|||++|+.||+..... .......+....+
T Consensus 205 ~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~tg~~p~~~~~~~-------~~~~~~~~~~~~~ 276 (340)
T 3an0_A 205 VDS-VAKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTP-------FQQLKQVVEEPSP 276 (340)
T ss_dssp SCH-HHHHHSSCCCCCCCHHHHSCCTTCCSCCHHHHHHHHHHHHHHHHHTSCSSCCCSCH-------HHHHHHHHHSCCC
T ss_pred ccc-cccccCCCCccccCccccccccccCCCCchhhHHHHHHHHHHHHHCCCCCccccch-------HHHHHHHhcCCCC
Confidence 432 1123356899999999964 347899999999999999999999999742110 0011111111111
Q ss_pred CCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 634 LPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 634 ~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.. .....+.++.+++.+||+.||++|||+.|+++
T Consensus 277 ~~--~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 310 (340)
T 3an0_A 277 QL--PADKFSAEFVDFTSQCLKKNSKERPTYPELMQ 310 (340)
T ss_dssp CC--CGGGSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred CC--CcccCCHHHHHHHHHHccCCcccCcCHHHHhc
Confidence 11 11123456899999999999999999999975
No 236
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=100.00 E-value=3.6e-39 Score=352.03 Aligned_cols=261 Identities=26% Similarity=0.309 Sum_probs=202.5
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeec------C
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSH------P 473 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~------~ 473 (673)
.++|++.+.||+|+||+||+|.+. +|+.||||++.... .....+.+.+|++++.+++||||+++++++.. .
T Consensus 13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~--~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~ 90 (676)
T 3qa8_A 13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQEL--SPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPN 90 (676)
T ss_dssp ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCC--CHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTT
T ss_pred CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccC--CHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCC
Confidence 368999999999999999999764 69999999987542 23446789999999999999999999999765 6
Q ss_pred CeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCc---eEEec
Q 005864 474 RHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYE---ARVSD 550 (673)
Q Consensus 474 ~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~---~kl~D 550 (673)
+..++||||+++|+|.+++........+++..+..++.|++.||+|||+. +|+||||||+||+++.++. +||+|
T Consensus 91 ~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~---gIVHrDLKP~NILl~~~g~~~~vKL~D 167 (676)
T 3qa8_A 91 DLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHEN---RIIHRDLKPENIVLQPGPQRLIHKIID 167 (676)
T ss_dssp SSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHT---TBCCCCCCSTTEEEECCSSSCEEEECS
T ss_pred CeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEeecCCCceeEEEcc
Confidence 77899999999999999998866555688999999999999999999999 9999999999999997765 99999
Q ss_pred ccceeecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCccccccccccc------cccccc
Q 005864 551 FGIAKFLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSS------NMNLSL 624 (673)
Q Consensus 551 fg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~------~~~~~~ 624 (673)
||++....... ......|++.|+|||.+.+..++.++||||+|+++|||++|+.||........... ......
T Consensus 168 FG~a~~~~~~~-~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~~~~~~~i~~~~~~~~~~ 246 (676)
T 3qa8_A 168 LGYAKELDQGE-LCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSNEHIVV 246 (676)
T ss_dssp CCCCCBTTSCC-CCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHHHHSSTTCC------CCS
T ss_pred ccccccccccc-ccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccchhhhhhhhhcccchhhhh
Confidence 99998765432 23456789999999999999999999999999999999999999864211100000 000001
Q ss_pred cc------ccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHH
Q 005864 625 NE------ILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTV 667 (673)
Q Consensus 625 ~~------~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v 667 (673)
.+ .+....+.+.......+..+.+++.+||+.||++|||++|+
T Consensus 247 ~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~el 295 (676)
T 3qa8_A 247 YDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQN 295 (676)
T ss_dssp CCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTC
T ss_pred hhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHH
Confidence 11 11122233333444566789999999999999999999774
No 237
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=100.00 E-value=6.4e-39 Score=329.61 Aligned_cols=255 Identities=23% Similarity=0.321 Sum_probs=178.2
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHH-HHhccCCCcccceeeeeecCCeeeEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIK-ALTEIRHRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~-~l~~l~h~niv~l~~~~~~~~~~~lv 479 (673)
++|++.+.||+|+||.||+|... +|+.||||++..... .....++..|+. +++.++||||+++++++..++..++|
T Consensus 22 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv 99 (327)
T 3aln_A 22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVD--EKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWIC 99 (327)
T ss_dssp CSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCC--HHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEE
T ss_pred HHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccC--chHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEE
Confidence 57888999999999999999774 799999999876432 223445555665 77778999999999999999999999
Q ss_pred EecccCCChHHHHhcC--CCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeec
Q 005864 480 YECLERGSLAEILSND--GSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFL 557 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~--~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~ 557 (673)
|||+++ +|.+++... .....+++..+..++.|++.||.|||+.. +++||||||+||+++.++.+||+|||++...
T Consensus 100 ~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~--~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~ 176 (327)
T 3aln_A 100 MELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENL--KIIHRDIKPSNILLDRSGNIKLCDFGISGQL 176 (327)
T ss_dssp ECCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHH--SCCCSCCCGGGEEEETTTEEEECCCSSSCC-
T ss_pred EeecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccC--CEeECCCCHHHEEEcCCCCEEEccCCCceec
Confidence 999986 888877631 11245889999999999999999999952 8999999999999999999999999999866
Q ss_pred CCCCCCceeccccccccccccc----ccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCC
Q 005864 558 KPGSSNWTEFAGTFGYVAPELA----YTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLP 633 (673)
Q Consensus 558 ~~~~~~~~~~~~~~~y~aPE~~----~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (673)
.... ......|++.|+|||.+ .+..++.++||||||+++|||++|+.||....... .....+.....+
T Consensus 177 ~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-------~~~~~~~~~~~~ 248 (327)
T 3aln_A 177 VDSI-AKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVF-------DQLTQVVKGDPP 248 (327)
T ss_dssp ------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC--------------CCCCCSCCC
T ss_pred cccc-ccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHH-------HHHHHHhcCCCC
Confidence 4322 22334689999999998 45678999999999999999999999987432110 111111111111
Q ss_pred -CCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 634 -LPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 634 -~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.+.......+..+.+++.+||+.||++|||+.|+++
T Consensus 249 ~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 285 (327)
T 3aln_A 249 QLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLK 285 (327)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred CCCCcccccCCHHHHHHHHHHhhCChhhCcCHHHHHh
Confidence 111111123446899999999999999999999975
No 238
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=100.00 E-value=8.2e-39 Score=340.79 Aligned_cols=249 Identities=25% Similarity=0.360 Sum_probs=186.8
Q ss_pred CCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhcc-CCCcccceeeeeecCCeeeEEEe
Q 005864 403 NFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEI-RHRNIVKFYGFCSHPRHSFLVYE 481 (673)
Q Consensus 403 ~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e 481 (673)
.|...+.||+|+||+||.+...+|+.||||++... ..+.+.+|+.++.++ +|||||++++++.+++..++|||
T Consensus 16 ~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~------~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E 89 (434)
T 2rio_A 16 LVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID------FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALE 89 (434)
T ss_dssp CEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG------GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEEC
T ss_pred eeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH------HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEe
Confidence 34456889999999998876678999999998643 234577899999887 89999999999999999999999
Q ss_pred cccCCChHHHHhcCCCCcc----chHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCC-------------C
Q 005864 482 CLERGSLAEILSNDGSIKE----FSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSE-------------Y 544 (673)
Q Consensus 482 ~~~~gsL~~~l~~~~~~~~----l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~-------------~ 544 (673)
|++ |+|.+++........ .++..+..++.||+.||+|||+. +|+||||||+||+++.+ +
T Consensus 90 ~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~ 165 (434)
T 2rio_A 90 LCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSL---KIIHRDLKPQNILVSTSSRFTADQQTGAENL 165 (434)
T ss_dssp CCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEECCHHHHSCCTTCCCSC
T ss_pred cCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCcccccccccCCCce
Confidence 996 599999987542111 13334578999999999999999 99999999999999754 4
Q ss_pred ceEEecccceeecCCCCCC----ceeccccccccccccccc-------CCcCcchhHHHHHHHHHHHHh-CCCCCccccc
Q 005864 545 EARVSDFGIAKFLKPGSSN----WTEFAGTFGYVAPELAYT-------MKVTEKCDVYSFGVLALEVIK-GKHPRDFISL 612 (673)
Q Consensus 545 ~~kl~Dfg~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~-------~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~ 612 (673)
.+||+|||++......... .....||+.|+|||++.+ ..++.++|||||||++|||++ |+.||+....
T Consensus 166 ~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~ 245 (434)
T 2rio_A 166 RILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYS 245 (434)
T ss_dssp EEEECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTT
T ss_pred EEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchh
Confidence 8999999999987554322 234579999999999865 668999999999999999999 9999863221
Q ss_pred ccccccccccccccccC-CCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 613 LSSSSSNMNLSLNEILD-PRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 613 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
... ........ +.. ........+.++.+++.+||+.||++|||+.|+++
T Consensus 246 ~~~------~i~~~~~~~~~~--~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 295 (434)
T 2rio_A 246 RES------NIIRGIFSLDEM--KCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLR 295 (434)
T ss_dssp HHH------HHHHTCCCCCCC--TTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred hHH------HHhcCCCCcccc--cccccccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence 110 00000000 011 11123456678999999999999999999999985
No 239
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.2e-39 Score=345.05 Aligned_cols=199 Identities=20% Similarity=0.351 Sum_probs=154.4
Q ss_pred cCCCc-cceeccCCcEEEEEEEeC---CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeee--cCCe
Q 005864 402 KNFDA-EQCIGIGGQASVYRGELP---SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCS--HPRH 475 (673)
Q Consensus 402 ~~~~~-~~~ig~G~~g~vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~--~~~~ 475 (673)
+.|++ .+.||+|+||+||+|+.. +++.||||++..... ...+.+|+.++++++||||+++++++. .+..
T Consensus 20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~-----~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~ 94 (405)
T 3rgf_A 20 DLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI-----SMSACREIALLRELKHPNVISLQKVFLSHADRK 94 (405)
T ss_dssp HHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSC-----CHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTE
T ss_pred hhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCC-----CHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCe
Confidence 34555 558999999999999865 578999999865422 246778999999999999999999995 4678
Q ss_pred eeEEEecccCCChHHHHhcCC------CCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEe----CCCCc
Q 005864 476 SFLVYECLERGSLAEILSNDG------SIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLL----SSEYE 545 (673)
Q Consensus 476 ~~lv~e~~~~gsL~~~l~~~~------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill----~~~~~ 545 (673)
.++||||+++ +|.+++.... ....+++..++.++.||+.||+|||+. +|+||||||+||++ +.++.
T Consensus 95 ~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~ 170 (405)
T 3rgf_A 95 VWLLFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGR 170 (405)
T ss_dssp EEEEEECCSE-EHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECCSSTTTTC
T ss_pred EEEEEeCCCC-CHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeCCCcCHHHeEEecCCCCCCc
Confidence 8999999975 8888875321 122489999999999999999999999 99999999999999 67789
Q ss_pred eEEecccceeecCCCC---CCceecccccccccccccccC-CcCcchhHHHHHHHHHHHHhCCCCCcc
Q 005864 546 ARVSDFGIAKFLKPGS---SNWTEFAGTFGYVAPELAYTM-KVTEKCDVYSFGVLALEVIKGKHPRDF 609 (673)
Q Consensus 546 ~kl~Dfg~~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~~g~~p~~~ 609 (673)
+||+|||+++...... .......||+.|+|||++.+. .++.++||||+||++|||++|+.||..
T Consensus 171 ~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~ 238 (405)
T 3rgf_A 171 VKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHC 238 (405)
T ss_dssp EEECCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCC
T ss_pred EEEEECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCC
Confidence 9999999998765332 223446789999999998874 589999999999999999999999964
No 240
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=100.00 E-value=2.2e-39 Score=343.65 Aligned_cols=254 Identities=24% Similarity=0.301 Sum_probs=191.7
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecC------C
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHP------R 474 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~------~ 474 (673)
.+|++.+.||+|+||.||+|++. +|+.||||++.... +...+|+++++.++|||||++++++... .
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~-------~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~ 126 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK-------RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEV 126 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT-------TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc-------hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcce
Confidence 35888999999999999999875 69999999986532 1234699999999999999999998532 2
Q ss_pred eeeEEEecccCCChHHHHhcC-CCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCC-CceEEeccc
Q 005864 475 HSFLVYECLERGSLAEILSND-GSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSE-YEARVSDFG 552 (673)
Q Consensus 475 ~~~lv~e~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~-~~~kl~Dfg 552 (673)
..++||||+++ ++.+.+... .....+++..+..++.||++||+|||+. +|+||||||+||+++.+ +.+||+|||
T Consensus 127 ~~~lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NILl~~~~~~~kl~DFG 202 (420)
T 1j1b_A 127 YLNLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDFG 202 (420)
T ss_dssp EEEEEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEEETTTTEEEECCCT
T ss_pred eEEeehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChhhEEEeCCCCeEEeccch
Confidence 35799999987 666665431 1224689999999999999999999999 99999999999999965 578999999
Q ss_pred ceeecCCCCCCceecccccccccccccccC-CcCcchhHHHHHHHHHHHHhCCCCCccccccccccccc-------cc--
Q 005864 553 IAKFLKPGSSNWTEFAGTFGYVAPELAYTM-KVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNM-------NL-- 622 (673)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~-------~~-- 622 (673)
+++.+..... .....||+.|+|||++.+. .++.++|||||||++|||++|+.||......+...... ..
T Consensus 203 ~a~~~~~~~~-~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~l~~i~~~lg~p~~~~~ 281 (420)
T 1j1b_A 203 SAKQLVRGEP-NVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQI 281 (420)
T ss_dssp TCEECCTTCC-CCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHH
T ss_pred hhhhcccCCC-ceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHH
Confidence 9987654332 3346789999999998764 78999999999999999999999997543221110000 00
Q ss_pred -----ccccccCCCCCCCCcchH-----HHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 623 -----SLNEILDPRLPLPSRNIQ-----DKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 623 -----~~~~~~~~~~~~~~~~~~-----~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
...+...+... ...+. ..+.++.+++.+||+.||++|||+.|+++
T Consensus 282 ~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~ 336 (420)
T 1j1b_A 282 REMNPNYTEFKFPQIK--AHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACA 336 (420)
T ss_dssp HHHCSCCCCCCCCCCC--CCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HhhChhhhhhccCccC--CCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhC
Confidence 00011111111 01111 12456899999999999999999999975
No 241
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.5e-39 Score=327.31 Aligned_cols=247 Identities=22% Similarity=0.330 Sum_probs=192.9
Q ss_pred HHHHhcCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhh---HHHHHHHHHHHHHhcc----CCCcccceee
Q 005864 397 IIRATKNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEI---SVQREFLNEIKALTEI----RHRNIVKFYG 468 (673)
Q Consensus 397 ~~~~~~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~---~~~~~~~~e~~~l~~l----~h~niv~l~~ 468 (673)
.....++|++.+.||+|+||.||+|.. .+|+.||||++........ .....+.+|+.++.++ +||||+++++
T Consensus 26 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~ 105 (312)
T 2iwi_A 26 REAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLD 105 (312)
T ss_dssp -------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEE
T ss_pred hhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEE
Confidence 344567899999999999999999976 4689999999865432211 1234466799999988 8999999999
Q ss_pred eeecCCeeeEEEec-ccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeC-CCCce
Q 005864 469 FCSHPRHSFLVYEC-LERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLS-SEYEA 546 (673)
Q Consensus 469 ~~~~~~~~~lv~e~-~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~-~~~~~ 546 (673)
++...+..++|+|| +.+++|.+++...+ .+++..+..++.|+++||+|||+. +|+||||||+||+++ .++.+
T Consensus 106 ~~~~~~~~~~v~e~~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~ 179 (312)
T 2iwi_A 106 WFETQEGFMLVLERPLPAQDLFDYITEKG---PLGEGPSRCFFGQVVAAIQHCHSR---GVVHRDIKDENILIDLRRGCA 179 (312)
T ss_dssp EC-----CEEEEECCSSEEEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHH---TEECCCCSGGGEEEETTTTEE
T ss_pred EEecCCeEEEEEEecCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChhhEEEeCCCCeE
Confidence 99999999999999 78999999998753 488999999999999999999999 999999999999999 88999
Q ss_pred EEecccceeecCCCCCCceecccccccccccccccCCcC-cchhHHHHHHHHHHHHhCCCCCcccccccccccccccccc
Q 005864 547 RVSDFGIAKFLKPGSSNWTEFAGTFGYVAPELAYTMKVT-EKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLN 625 (673)
Q Consensus 547 kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~-~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~ 625 (673)
||+|||++...... ......|+..|+|||++.+..+. .++||||+|+++|||++|+.||......
T Consensus 180 kl~dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~------------ 245 (312)
T 2iwi_A 180 KLIDFGSGALLHDE--PYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQEI------------ 245 (312)
T ss_dssp EECCCSSCEECCSS--CBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHHH------------
T ss_pred EEEEcchhhhcccC--cccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChHHH------------
Confidence 99999999876543 23456689999999998876664 5899999999999999999998743211
Q ss_pred cccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 626 EILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.......+.. .+..+.+++.+||+.||++|||++|+++
T Consensus 246 --~~~~~~~~~~----~~~~~~~li~~~l~~~p~~Rps~~e~l~ 283 (312)
T 2iwi_A 246 --LEAELHFPAH----VSPDCCALIRRCLAPKPSSRPSLEEILL 283 (312)
T ss_dssp --HHTCCCCCTT----SCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred --hhhccCCccc----CCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 1111222211 2345889999999999999999999986
No 242
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.1e-38 Score=339.25 Aligned_cols=318 Identities=21% Similarity=0.219 Sum_probs=178.2
Q ss_pred CCccccCCCcccCCCCCCEEEeeCCccc-cCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCccccccc
Q 005864 2 NHLSGAIPPSVGNFTNLKGLYLYSNSLS-GSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNI 80 (673)
Q Consensus 2 n~i~~~~p~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~ 80 (673)
|+|++..|..|+++++|++|+|++|.+. .+.+..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..
T Consensus 40 n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 119 (455)
T 3v47_A 40 NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV 119 (455)
T ss_dssp SCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHH
T ss_pred CccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccc
Confidence 5566666666666666666666666665 233455666666666666666666555666666666666666666666532
Q ss_pred c--cccCCCCCccEEEccCCccccccccC-ccccCCCcEEEcccCccCccCChhhhcc--ccccccccccccccccCCcc
Q 005864 81 S--EVFGIYPNLTFLDISHNNFYGEIWSS-WGKCQQLGTLNFSMNNITGSIPPEIGKL--YQLHKLDFSLNQIVGEIPIE 155 (673)
Q Consensus 81 ~--~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~l~~n~i~~~~~~~ 155 (673)
+ ..|..+++|++|+|++|.+++..+.. +.++++|++|++++|.+++..+..+..+ .+|+.|++++|.+.+..+..
T Consensus 120 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~ 199 (455)
T 3v47_A 120 LSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199 (455)
T ss_dssp HHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTC
T ss_pred cCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhh
Confidence 2 23666666666666666666554444 5666666666666666666555555444 22333333333332211111
Q ss_pred --------ccCCCCCCEEEccCccccccCCcccc---------------------------------------CCCCCCE
Q 005864 156 --------LGNLKSLNYLVLNGNKLSGNLPRVLG---------------------------------------SLSELEY 188 (673)
Q Consensus 156 --------l~~l~~L~~L~L~~n~l~~~~~~~l~---------------------------------------~l~~L~~ 188 (673)
+..+++|++|++++|++++..+..+. ..++|+.
T Consensus 200 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 279 (455)
T 3v47_A 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKT 279 (455)
T ss_dssp TTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCE
T ss_pred ccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceE
Confidence 11234555555555555432222111 1135666
Q ss_pred EEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCccc
Q 005864 189 LDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNL 268 (673)
Q Consensus 189 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 268 (673)
|++++|.+++..|..+..+++|+.|++++|++++..|..|..+++|+.|++++|.+++..+..|..+++|++|+|++|++
T Consensus 280 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 359 (455)
T 3v47_A 280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCC
T ss_pred EEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcc
Confidence 66666666555555566666666666666666655555566666666666666666555555556666666666666666
Q ss_pred cccCccccccCCCccEEEccCccccCCCCCC-cccccCccccccCCcCCCCC
Q 005864 269 SGLIPSCFEGMHGLSCIDISYNELLGLIPNS-TGFQYDPIQALRGNRGLCGD 319 (673)
Q Consensus 269 ~~~~~~~~~~~~~L~~l~l~~N~l~~~~~~~-~~~~~~~~~~~~~n~~~c~~ 319 (673)
++..|..|..+++|++|++++|++++.++.. ..........+.+|+..|..
T Consensus 360 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 360 RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred cccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence 6555555666666666666666666554443 23334444555566555543
No 243
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=100.00 E-value=3e-39 Score=330.60 Aligned_cols=244 Identities=22% Similarity=0.350 Sum_probs=199.8
Q ss_pred HhcCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhh---HHHHHHHHHHHHHhccC--CCcccceeeeeecC
Q 005864 400 ATKNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEI---SVQREFLNEIKALTEIR--HRNIVKFYGFCSHP 473 (673)
Q Consensus 400 ~~~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~---~~~~~~~~e~~~l~~l~--h~niv~l~~~~~~~ 473 (673)
..++|++.+.||+|+||+||+|.. .+|+.||||++........ ...+.+.+|+.++.+++ ||||+++++++..+
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~ 120 (320)
T 3a99_A 41 LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERP 120 (320)
T ss_dssp CTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECS
T ss_pred ccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecC
Confidence 356799999999999999999975 4789999999876432211 12345678999999996 59999999999999
Q ss_pred CeeeEEEecccC-CChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeC-CCCceEEecc
Q 005864 474 RHSFLVYECLER-GSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLS-SEYEARVSDF 551 (673)
Q Consensus 474 ~~~~lv~e~~~~-gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~-~~~~~kl~Df 551 (673)
+..++|+|++.+ ++|.+++... ..+++..+..++.|+++||+|||+. +|+||||||+||+++ +++.+||+||
T Consensus 121 ~~~~lv~e~~~~~~~L~~~l~~~---~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~kL~Df 194 (320)
T 3a99_A 121 DSFVLILERPEPVQDLFDFITER---GALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNRGELKLIDF 194 (320)
T ss_dssp SEEEEEEECCSSEEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCC
T ss_pred CcEEEEEEcCCCCccHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHHC---CcEeCCCCHHHEEEeCCCCCEEEeeC
Confidence 999999999986 8999999865 3478899999999999999999999 999999999999999 7789999999
Q ss_pred cceeecCCCCCCceecccccccccccccccCCc-CcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCC
Q 005864 552 GIAKFLKPGSSNWTEFAGTFGYVAPELAYTMKV-TEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDP 630 (673)
Q Consensus 552 g~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~ 630 (673)
|++...... ......||+.|+|||++.+..+ +.++||||||+++|||++|+.||....... ..
T Consensus 195 g~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~--------------~~ 258 (320)
T 3a99_A 195 GSGALLKDT--VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEII--------------RG 258 (320)
T ss_dssp TTCEECCSS--CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHHHH--------------HC
T ss_pred ccccccccc--cccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChhhhh--------------cc
Confidence 999876532 2344678999999999887665 678999999999999999999987432111 11
Q ss_pred CCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 631 RLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 631 ~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
....+.. .+.++.+++.+||+.||++|||++|+++
T Consensus 259 ~~~~~~~----~~~~~~~li~~~l~~dp~~Rps~~~ll~ 293 (320)
T 3a99_A 259 QVFFRQR----VSSECQHLIRWCLALRPSDRPTFEEIQN 293 (320)
T ss_dssp CCCCSSC----CCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ccccccc----CCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 1111111 2235889999999999999999999986
No 244
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=100.00 E-value=7.5e-39 Score=332.65 Aligned_cols=255 Identities=21% Similarity=0.292 Sum_probs=195.1
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCe-----
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRH----- 475 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~----- 475 (673)
++|.+.+.||+|+||+||+|... +|+.||||++.... ......+.+.+|+.+++.++||||+++++++...+.
T Consensus 24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 102 (353)
T 3coi_A 24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPF-QSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 102 (353)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTT-SSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccc-cchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence 56888999999999999999764 69999999987643 223346788999999999999999999999987654
Q ss_pred -eeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccce
Q 005864 476 -SFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIA 554 (673)
Q Consensus 476 -~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~ 554 (673)
.++||||++ |+|.+++.. .+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++
T Consensus 103 ~~~lv~e~~~-~~l~~~~~~-----~~~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~ 173 (353)
T 3coi_A 103 DFYLVMPFMQ-TDLQKIMGL-----KFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGLA 173 (353)
T ss_dssp CCEEEEECCS-EEGGGTTTS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTCCEEECSTTCT
T ss_pred eEEEEecccc-CCHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEeECCCCcEEEeecccc
Confidence 499999998 488887743 388999999999999999999999 9999999999999999999999999999
Q ss_pred eecCCCCCCceeccccccccccccccc-CCcCcchhHHHHHHHHHHHHhCCCCCccccccccccccc-------cccc--
Q 005864 555 KFLKPGSSNWTEFAGTFGYVAPELAYT-MKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNM-------NLSL-- 624 (673)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~-------~~~~-- 624 (673)
...... .....+|+.|+|||.+.+ ..++.++||||+|+++|||++|+.||......+...... ....
T Consensus 174 ~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~ 250 (353)
T 3coi_A 174 RHADAE---MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQK 250 (353)
T ss_dssp TC-----------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHHHHHHHHHHCBCCHHHHTT
T ss_pred cCCCCC---ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHH
Confidence 765322 334578999999999876 678999999999999999999999997543221100000 0000
Q ss_pred ----------ccccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 625 ----------NEILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 625 ----------~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
...-..............+.++.+++.+||+.||++|||++|+++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~ 305 (353)
T 3coi_A 251 LNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT 305 (353)
T ss_dssp CSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred HhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 000000000000111233456899999999999999999999985
No 245
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-38 Score=337.92 Aligned_cols=246 Identities=23% Similarity=0.339 Sum_probs=185.9
Q ss_pred cCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhcc-CCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEI-RHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ 480 (673)
.+|+..+.||+|+||+||.....+|+.||||++..... ..+.+|+.+++++ +|||||++++++.+.+..++||
T Consensus 24 ~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~------~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~ 97 (432)
T 3p23_A 24 ISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF------SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAI 97 (432)
T ss_dssp EEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE------EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEE
T ss_pred EEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH------HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEE
Confidence 46888899999999997766666899999999865322 2345799999999 7999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCC-----CCceEEeccccee
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSS-----EYEARVSDFGIAK 555 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~-----~~~~kl~Dfg~~~ 555 (673)
||++ |+|.+++.... ....+..+..++.||+.||+|||+. +|+||||||+||+++. ...+||+|||+++
T Consensus 98 E~~~-g~L~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~ 171 (432)
T 3p23_A 98 ELCA-ATLQEYVEQKD--FAHLGLEPITLLQQTTSGLAHLHSL---NIVHRDLKPHNILISMPNAHGKIKAMISDFGLCK 171 (432)
T ss_dssp ECCS-EEHHHHHHSSS--CCCCSSCHHHHHHHHHHHHHHHHHT---TCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEE
T ss_pred ECCC-CCHHHHHHhcC--CCccchhHHHHHHHHHHHHHHHHHC---cCEeCCCCHHHEEEecCCCCCceeEEEeccccee
Confidence 9997 49999998754 2234445678999999999999999 9999999999999953 2358899999998
Q ss_pred ecCCCC---CCceecccccccccccccc---cCCcCcchhHHHHHHHHHHHHh-CCCCCccccccccccccccccccccc
Q 005864 556 FLKPGS---SNWTEFAGTFGYVAPELAY---TMKVTEKCDVYSFGVLALEVIK-GKHPRDFISLLSSSSSNMNLSLNEIL 628 (673)
Q Consensus 556 ~~~~~~---~~~~~~~~~~~y~aPE~~~---~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~ 628 (673)
...... .......||+.|+|||++. ...++.++||||+||++|||++ |..||....... .....
T Consensus 172 ~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~---------~~~~~ 242 (432)
T 3p23_A 172 KLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQ---------ANILL 242 (432)
T ss_dssp CC------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHH---------HHHHT
T ss_pred eccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHH---------HHHHh
Confidence 765432 2234467999999999987 4567889999999999999999 999986321110 00000
Q ss_pred CC-CCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 629 DP-RLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 629 ~~-~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
.. .... ..........+.+++.+||+.||++|||++|+++
T Consensus 243 ~~~~~~~-~~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~ 283 (432)
T 3p23_A 243 GACSLDC-LHPEKHEDVIARELIEKMIAMDPQKRPSAKHVLK 283 (432)
T ss_dssp TCCCCTT-SCTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred ccCCccc-cCccccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence 00 0110 0111234456889999999999999999999984
No 246
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=100.00 E-value=2.2e-38 Score=332.05 Aligned_cols=257 Identities=21% Similarity=0.282 Sum_probs=196.8
Q ss_pred cCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccC-----------CCcccceeee
Q 005864 402 KNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIR-----------HRNIVKFYGF 469 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~-----------h~niv~l~~~ 469 (673)
++|.+.+.||+|+||+||+|.. .+|+.||||++.... ...+.+.+|+.++.+++ ||||++++++
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~ 94 (373)
T 1q8y_A 19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK----VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDH 94 (373)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH----HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEE
T ss_pred CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCc----cchhhhhHHHHHHHHhhcccccchhccccchHHHHHHH
Confidence 5789999999999999999976 478999999987432 23566788999999886 8999999999
Q ss_pred eecCC----eeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeC----
Q 005864 470 CSHPR----HSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLS---- 541 (673)
Q Consensus 470 ~~~~~----~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~---- 541 (673)
+...+ ..++||||+ +++|.+++..... ..+++..+..++.||+.||+|||+++ +|+||||||+||+++
T Consensus 95 ~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~-~~~~~~~~~~i~~qi~~aL~~lH~~~--~ivH~Dikp~NIll~~~~~ 170 (373)
T 1q8y_A 95 FNHKGPNGVHVVMVFEVL-GENLLALIKKYEH-RGIPLIYVKQISKQLLLGLDYMHRRC--GIIHTDIKPENVLMEIVDS 170 (373)
T ss_dssp EEEEETTEEEEEEEECCC-CEEHHHHHHHTTT-SCCCHHHHHHHHHHHHHHHHHHHHTT--CEECSCCSGGGEEEEEEET
T ss_pred hhccCCCCceEEEEEecC-CCCHHHHHHHhhc-cCCcHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChHHeEEeccCC
Confidence 97644 789999999 8899999987542 34889999999999999999999953 899999999999994
Q ss_pred --CCCceEEecccceeecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccc
Q 005864 542 --SEYEARVSDFGIAKFLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSN 619 (673)
Q Consensus 542 --~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~ 619 (673)
..+.+||+|||++...... .....||+.|+|||++.+..++.++|||||||++|||++|+.||............
T Consensus 171 ~~~~~~~kl~Dfg~a~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~ 247 (373)
T 1q8y_A 171 PENLIQIKIADLGNACWYDEH---YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDD 247 (373)
T ss_dssp TTTEEEEEECCCTTCEETTBC---CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHH
T ss_pred CcCcceEEEcccccccccCCC---CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChH
Confidence 4457999999999876432 23457899999999999999999999999999999999999999743211000000
Q ss_pred --c---------------------------ccccccccCCCC-------CCCCcchHHHHHHHHHHHHHcccCCCCCCCC
Q 005864 620 --M---------------------------NLSLNEILDPRL-------PLPSRNIQDKLISILEVALLCLEESPESRPT 663 (673)
Q Consensus 620 --~---------------------------~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps 663 (673)
. ......+..... ..........+.++.+++.+||+.||++|||
T Consensus 248 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt 327 (373)
T 1q8y_A 248 DHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRAD 327 (373)
T ss_dssp HHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBC
T ss_pred HHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCC
Confidence 0 000000000000 0001122456778999999999999999999
Q ss_pred HHHHHH
Q 005864 664 MQTVCQ 669 (673)
Q Consensus 664 ~~~v~~ 669 (673)
++|+++
T Consensus 328 ~~ell~ 333 (373)
T 1q8y_A 328 AGGLVN 333 (373)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 999986
No 247
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=100.00 E-value=4.2e-38 Score=330.34 Aligned_cols=200 Identities=22% Similarity=0.294 Sum_probs=170.2
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccC-CC-----cccceeeeeecC
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIR-HR-----NIVKFYGFCSHP 473 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~-h~-----niv~l~~~~~~~ 473 (673)
.++|++.+.||+|+||+||+|... +|+.||||+++.. .....++..|+.++..++ |+ +|+++++++...
T Consensus 53 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~----~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~ 128 (382)
T 2vx3_A 53 MDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK----KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFR 128 (382)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS----HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEET
T ss_pred eeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc----HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccC
Confidence 468999999999999999999765 6889999998743 223566778888888874 44 599999999999
Q ss_pred CeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeC--CCCceEEecc
Q 005864 474 RHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLS--SEYEARVSDF 551 (673)
Q Consensus 474 ~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~--~~~~~kl~Df 551 (673)
+..++||||+++ +|.+++..... ..+++..+..++.|++.||.|||.+. .+|+||||||+||+++ .++.+||+||
T Consensus 129 ~~~~lv~e~~~~-~L~~~l~~~~~-~~~~~~~~~~i~~qi~~al~~lH~~~-~~ivHrDlkp~NIll~~~~~~~~kL~DF 205 (382)
T 2vx3_A 129 NHLCLVFEMLSY-NLYDLLRNTNF-RGVSLNLTRKFAQQMCTALLFLATPE-LSIIHCDLKPENILLCNPKRSAIKIVDF 205 (382)
T ss_dssp TEEEEEEECCCC-BHHHHHHHTTT-SCCCHHHHHHHHHHHHHHHHHHTSTT-TCEECCCCSGGGEEESSTTSCCEEECCC
T ss_pred CceEEEEecCCC-CHHHHHhhcCc-CCCCHHHHHHHHHHHHHHHHHhccCC-CCEEcCCCCcccEEEecCCCCcEEEEec
Confidence 999999999975 99999987542 35899999999999999999999521 1899999999999995 4678999999
Q ss_pred cceeecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCccc
Q 005864 552 GIAKFLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFI 610 (673)
Q Consensus 552 g~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~ 610 (673)
|+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus 206 G~a~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~ 261 (382)
T 2vx3_A 206 GSSCQLGQR---IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGA 261 (382)
T ss_dssp TTCEETTCC---CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred cCceecccc---cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 999876432 23467899999999999999999999999999999999999999743
No 248
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=100.00 E-value=3e-38 Score=317.00 Aligned_cols=230 Identities=14% Similarity=0.082 Sum_probs=184.7
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEEE
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 480 (673)
++|++.+.||+|+||.||+|.+. +|+.||||++...........+.+.+|+..+.+++||||+++++++.+++..++||
T Consensus 31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 110 (286)
T 3uqc_A 31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA 110 (286)
T ss_dssp TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence 57999999999999999999775 58999999998765544556788999999999999999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
||+++++|.++++.. ....++.+++.|++.||+|||++ +|+||||||+||+++.++.+||+++|
T Consensus 111 e~~~g~~L~~~l~~~-----~~~~~~~~i~~ql~~aL~~lH~~---givH~Dikp~NIll~~~g~~kl~~~~-------- 174 (286)
T 3uqc_A 111 EWIRGGSLQEVADTS-----PSPVGAIRAMQSLAAAADAAHRA---GVALSIDHPSRVRVSIDGDVVLAYPA-------- 174 (286)
T ss_dssp ECCCEEEHHHHHTTC-----CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEETTSCEEECSCC--------
T ss_pred EecCCCCHHHHHhcC-----CChHHHHHHHHHHHHHHHHHHHC---CCccCCCCcccEEEcCCCCEEEEecc--------
Confidence 999999999999643 23446788999999999999999 99999999999999999999998543
Q ss_pred CCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcchH
Q 005864 561 SSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRNIQ 640 (673)
Q Consensus 561 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (673)
|++ .++.++|||||||++|||++|+.||......+.. .............+.....
T Consensus 175 ------------~~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 230 (286)
T 3uqc_A 175 ------------TMP-------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGL-----APAERDTAGQPIEPADIDR 230 (286)
T ss_dssp ------------CCT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCS-----EECCBCTTSCBCCHHHHCT
T ss_pred ------------ccC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhh-----HHHHHHhccCCCChhhccc
Confidence 333 3688999999999999999999999854322110 0001111111111111112
Q ss_pred HHHHHHHHHHHHcccCCCCCCCCHHHHHHHhh
Q 005864 641 DKLISILEVALLCLEESPESRPTMQTVCQLLC 672 (673)
Q Consensus 641 ~~~~~l~~li~~cl~~dp~~Rps~~~v~~~L~ 672 (673)
..+.++.+++.+||+.||++| |+.|+++.|+
T Consensus 231 ~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~ 261 (286)
T 3uqc_A 231 DIPFQISAVAARSVQGDGGIR-SASTLLNLMQ 261 (286)
T ss_dssp TSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcccCCccC-CHHHHHHHHH
Confidence 334568999999999999999 9999999986
No 249
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.5e-37 Score=335.04 Aligned_cols=313 Identities=21% Similarity=0.199 Sum_probs=288.1
Q ss_pred CccccCCCcccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCccccccccc
Q 005864 3 HLSGAIPPSVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISE 82 (673)
Q Consensus 3 ~i~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~ 82 (673)
+++ .+|..+. ++++.|+|++|+|++..+..|.++++|++|+|++|.+++..|.+|.++++|++|+|++|+++.++..
T Consensus 22 ~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 98 (477)
T 2id5_A 22 RFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG 98 (477)
T ss_dssp CCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT
T ss_pred CcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc
Confidence 455 6777775 6899999999999998899999999999999999999988899999999999999999999999999
Q ss_pred ccCCCCCccEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccccCCccccCCCCC
Q 005864 83 VFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSL 162 (673)
Q Consensus 83 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L 162 (673)
.|..+++|++|+|++|.+....+..|.++++|++|+|++|.++...+..|..+++|++|++++|.+++..+..+..+++|
T Consensus 99 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 178 (477)
T 2id5_A 99 VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL 178 (477)
T ss_dssp SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTC
T ss_pred cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCC
Confidence 99999999999999999999989999999999999999999999889999999999999999999997766779999999
Q ss_pred CEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCC
Q 005864 163 NYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHN 242 (673)
Q Consensus 163 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N 242 (673)
+.|+|++|.+.+..+..|..+++|+.|++++|...+.++.......+|+.|++++|+++...+..|..+++|+.|+|++|
T Consensus 179 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp CEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS
T ss_pred cEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC
Confidence 99999999999888889999999999999999987777777777779999999999999877778999999999999999
Q ss_pred cCCCCCcccccCCCcccEEEecCccccccCccccccCCCccEEEccCccccCCCCCCc-ccccCccccccCCcCCCC
Q 005864 243 FLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLGLIPNST-GFQYDPIQALRGNRGLCG 318 (673)
Q Consensus 243 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~~~~-~~~~~~~~~~~~n~~~c~ 318 (673)
.+++..+..|..+++|+.|+|++|++++..|..|..+++|+.|++++|.+++.++..+ .........+.+|++.|.
T Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred cCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 9998888889999999999999999999999999999999999999999999877643 345566778899998885
No 250
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=100.00 E-value=3.9e-38 Score=322.57 Aligned_cols=253 Identities=20% Similarity=0.277 Sum_probs=179.8
Q ss_pred hcCCCccceeccCCcEEEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEE
Q 005864 401 TKNFDAEQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 479 (673)
.++|++.+.||+|+||.||+|... +|+.||||++...... ....+.+.++..+++.++||||+++++++..++..++|
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv 102 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNK-EENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIA 102 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCH-HHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccc-hHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEE
Confidence 357888999999999999999875 7999999998764322 22344555666678888999999999999999999999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhh-cCCCCeEEecCCCCCeEeCCCCceEEecccceeecC
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHH-DCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLK 558 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~-~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~ 558 (673)
|||+ ++.+..+..... ..+++..+..++.|+++||+|||+ . +++||||||+||+++.++.+||+|||++....
T Consensus 103 ~e~~-~~~~~~l~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~---~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~ 176 (318)
T 2dyl_A 103 MELM-GTCAEKLKKRMQ--GPIPERILGKMTVAIVKALYYLKEKH---GVIHRDVKPSNILLDERGQIKLCDFGISGRLV 176 (318)
T ss_dssp ECCC-SEEHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCGGGEEECTTSCEEECCCTTC----
T ss_pred Eecc-CCcHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHhhC---CEEeCCCCHHHEEECCCCCEEEEECCCchhcc
Confidence 9999 446655554322 458899999999999999999998 6 89999999999999999999999999997664
Q ss_pred CCCCCceecccccccccccccc-----cCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCC
Q 005864 559 PGSSNWTEFAGTFGYVAPELAY-----TMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLP 633 (673)
Q Consensus 559 ~~~~~~~~~~~~~~y~aPE~~~-----~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (673)
... ......+++.|+|||.+. ...++.++||||||+++|||++|+.||...... ......+.....+
T Consensus 177 ~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-------~~~~~~~~~~~~~ 248 (318)
T 2dyl_A 177 DDK-AKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTD-------FEVLTKVLQEEPP 248 (318)
T ss_dssp -----------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSH-------HHHHHHHHHSCCC
T ss_pred CCc-cccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCcc-------HHHHHHHhccCCC
Confidence 332 223456899999999984 556889999999999999999999998742111 0011111111111
Q ss_pred CCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 634 LPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 634 ~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
... .....+.++.+++.+||+.||.+|||++|+++
T Consensus 249 ~~~-~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (318)
T 2dyl_A 249 LLP-GHMGFSGDFQSFVKDCLTKDHRKRPKYNKLLE 283 (318)
T ss_dssp CCC-SSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred CCC-ccCCCCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 000 00112345889999999999999999999975
No 251
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.1e-37 Score=333.74 Aligned_cols=306 Identities=23% Similarity=0.249 Sum_probs=266.7
Q ss_pred cCCCcccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccc-cCccccCCCCCcEEEccCcccccccccccC
Q 005864 7 AIPPSVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQ-IPRSLRNLASLNRVHLEQNHLTGNISEVFG 85 (673)
Q Consensus 7 ~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~ 85 (673)
.+|. +. ++|++|+|++|.|++..|..|+++++|++|+|++|.+.+. .+..|.++++|++|+|++|+++++.+..|.
T Consensus 24 ~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 100 (455)
T 3v47_A 24 QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN 100 (455)
T ss_dssp SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTT
T ss_pred cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhcc
Confidence 5566 33 7899999999999998899999999999999999999744 467899999999999999999999999999
Q ss_pred CCCCccEEEccCCccccccc--cCccccCCCcEEEcccCccCccCChh-hhccccccccccccccccccCCccccCC--C
Q 005864 86 IYPNLTFLDISHNNFYGEIW--SSWGKCQQLGTLNFSMNNITGSIPPE-IGKLYQLHKLDFSLNQIVGEIPIELGNL--K 160 (673)
Q Consensus 86 ~l~~L~~L~L~~n~i~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~i~~~~~~~l~~l--~ 160 (673)
.+++|++|+|++|.+++..+ ..+..+++|++|+|++|.+++..|.. +.++++|++|++++|++++..+..+..+ .
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~ 180 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTC
T ss_pred CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccc
Confidence 99999999999999987444 44999999999999999999887776 8999999999999999998888888776 7
Q ss_pred CCCEEEccCccccccCCccc--------cCCCCCCEEEeCCCCCCCcCCccccc--------------------------
Q 005864 161 SLNYLVLNGNKLSGNLPRVL--------GSLSELEYLDLSTNKLSGSIPETLGN-------------------------- 206 (673)
Q Consensus 161 ~L~~L~L~~n~l~~~~~~~l--------~~l~~L~~L~l~~n~l~~~~~~~l~~-------------------------- 206 (673)
+|+.|++++|.+.+..+..+ ..+++|+.|++++|.+++..|..+..
T Consensus 181 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 260 (455)
T 3v47_A 181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260 (455)
T ss_dssp EEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS
T ss_pred cccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhh
Confidence 99999999999996555433 36689999999999987655544332
Q ss_pred -------------cccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCccccccCc
Q 005864 207 -------------LLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGLIP 273 (673)
Q Consensus 207 -------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 273 (673)
.++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..|..|..+++|++|+|++|.+++..+
T Consensus 261 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 340 (455)
T 3v47_A 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340 (455)
T ss_dssp SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG
T ss_pred hccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh
Confidence 2589999999999999999999999999999999999998888899999999999999999999999
Q ss_pred cccccCCCccEEEccCccccCCCCCCc-ccccCccccccCCcC
Q 005864 274 SCFEGMHGLSCIDISYNELLGLIPNST-GFQYDPIQALRGNRG 315 (673)
Q Consensus 274 ~~~~~~~~L~~l~l~~N~l~~~~~~~~-~~~~~~~~~~~~n~~ 315 (673)
..|..+++|++|++++|.+++..|... .........+.+|.-
T Consensus 341 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 383 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383 (455)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcc
Confidence 999999999999999999999877643 445555666676653
No 252
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=100.00 E-value=5.3e-38 Score=326.85 Aligned_cols=256 Identities=19% Similarity=0.261 Sum_probs=197.6
Q ss_pred cCCCccceeccCCcEEEEEEEeC-CC-CEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCc------ccceeeeeecC
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP-SG-EVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRN------IVKFYGFCSHP 473 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~-~~-~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~n------iv~l~~~~~~~ 473 (673)
++|++.+.||+|+||+||+|... ++ +.||+|+++.. ....+.+.+|+.+++.++|++ ++.+++++...
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 94 (355)
T 2eu9_A 19 ERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV----GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFH 94 (355)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC----HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEET
T ss_pred ccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc----ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeC
Confidence 57999999999999999999764 44 68999998643 223567888999999998766 89999999999
Q ss_pred CeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEe-------------
Q 005864 474 RHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLL------------- 540 (673)
Q Consensus 474 ~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill------------- 540 (673)
+..++||||+ ++++.+++..... ..+++..+..++.||+.||+|||+. +|+||||||+||++
T Consensus 95 ~~~~lv~e~~-~~~l~~~l~~~~~-~~~~~~~~~~i~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~ 169 (355)
T 2eu9_A 95 GHMCIAFELL-GKNTFEFLKENNF-QPYPLPHVRHMAYQLCHALRFLHEN---QLTHTDLKPENILFVNSEFETLYNEHK 169 (355)
T ss_dssp TEEEEEEECC-CCBHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEESCCCEEEEECCC-
T ss_pred CeEEEEEecc-CCChHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEecccccccccccc
Confidence 9999999999 5677777765432 4589999999999999999999999 99999999999999
Q ss_pred ------CCCCceEEecccceeecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCccccccc
Q 005864 541 ------SSEYEARVSDFGIAKFLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLS 614 (673)
Q Consensus 541 ------~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~ 614 (673)
+.++.+||+|||++...... .....||+.|+|||++.+..++.++|||||||++|||++|+.||......+
T Consensus 170 ~~~~~~~~~~~~kl~Dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~ 246 (355)
T 2eu9_A 170 SCEEKSVKNTSIRVADFGSATFDHEH---HTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENRE 246 (355)
T ss_dssp CCCEEEESCCCEEECCCTTCEETTSC---CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred cccccccCCCcEEEeecCcccccccc---ccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 56789999999999875432 234578999999999999999999999999999999999999997432211
Q ss_pred ccc-------ccccccc------ccccCCCCCCC-------------------CcchHHHHHHHHHHHHHcccCCCCCCC
Q 005864 615 SSS-------SNMNLSL------NEILDPRLPLP-------------------SRNIQDKLISILEVALLCLEESPESRP 662 (673)
Q Consensus 615 ~~~-------~~~~~~~------~~~~~~~~~~~-------------------~~~~~~~~~~l~~li~~cl~~dp~~Rp 662 (673)
... ....... ..........+ .......+.++.+++.+||+.||++||
T Consensus 247 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rp 326 (355)
T 2eu9_A 247 HLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRI 326 (355)
T ss_dssp HHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSC
T ss_pred HHHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCc
Confidence 000 0000000 00000000000 001123355789999999999999999
Q ss_pred CHHHHHH
Q 005864 663 TMQTVCQ 669 (673)
Q Consensus 663 s~~~v~~ 669 (673)
|++|+++
T Consensus 327 t~~e~l~ 333 (355)
T 2eu9_A 327 TLAEALL 333 (355)
T ss_dssp CHHHHTT
T ss_pred CHHHHhc
Confidence 9999974
No 253
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=100.00 E-value=8.2e-37 Score=309.51 Aligned_cols=230 Identities=22% Similarity=0.330 Sum_probs=180.3
Q ss_pred cCCCcc-ceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhhHHHHHHHHHHHHH-hccCCCcccceeeeeec----CC
Q 005864 402 KNFDAE-QCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEISVQREFLNEIKAL-TEIRHRNIVKFYGFCSH----PR 474 (673)
Q Consensus 402 ~~~~~~-~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l-~~l~h~niv~l~~~~~~----~~ 474 (673)
++|.+. +.||+|+||.||+|.. .+|+.||+|++... ..+.+|+.++ +..+||||+++++++.. ..
T Consensus 17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~--------~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~ 88 (299)
T 3m2w_A 17 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC--------PKARREVELHWRASQCPHIVRIVDVYENLYAGRK 88 (299)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS--------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEE
T ss_pred cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc--------HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCc
Confidence 456666 7899999999999976 47999999998542 3456788887 55589999999999876 67
Q ss_pred eeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCC---CCceEEecc
Q 005864 475 HSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSS---EYEARVSDF 551 (673)
Q Consensus 475 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~---~~~~kl~Df 551 (673)
..++||||+++|+|.+++..... ..+++..+..++.|++.||+|||+. +|+||||||+||+++. ++.+||+||
T Consensus 89 ~~~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~kl~Df 164 (299)
T 3m2w_A 89 CLLIVMECLDGGELFSRIQDRGD-QAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDF 164 (299)
T ss_dssp EEEEEECCCCSCBHHHHHHHCTT-CCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCC
T ss_pred eEEEEEeecCCCcHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEecCCCCCcEEEecc
Confidence 78999999999999999987542 4589999999999999999999999 9999999999999998 788999999
Q ss_pred cceeecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCC
Q 005864 552 GIAKFLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPR 631 (673)
Q Consensus 552 g~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (673)
|++.... +..++.++||||+||++|||++|+.||......... ......+....
T Consensus 165 g~a~~~~----------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~----~~~~~~~~~~~ 218 (299)
T 3m2w_A 165 GFAKETT----------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAIS----PGMKTRIRMGQ 218 (299)
T ss_dssp TTCEECT----------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC-----------CCSCCSSCTTC
T ss_pred ccccccc----------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhh----HHHHHHHhhcc
Confidence 9987542 234678999999999999999999999743321110 11111122222
Q ss_pred CCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 632 LPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 632 ~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
...+.......+.++.+++.+||+.||++|||++|+++
T Consensus 219 ~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~ 256 (299)
T 3m2w_A 219 YEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN 256 (299)
T ss_dssp CSSCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ccCCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 22222222234567999999999999999999999986
No 254
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=4e-37 Score=346.54 Aligned_cols=236 Identities=22% Similarity=0.333 Sum_probs=191.5
Q ss_pred cCCCccceeccCCcEEEEEEEeC--CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCe----
Q 005864 402 KNFDAEQCIGIGGQASVYRGELP--SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRH---- 475 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~---- 475 (673)
++|++.+.||+|+||+||+|.+. +|+.||||++... ........+.+|+.++.+++||||+++++++...+.
T Consensus 80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~--~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~ 157 (681)
T 2pzi_A 80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHS--GDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDP 157 (681)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSS--CCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCE
T ss_pred CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCcc--CCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCc
Confidence 57999999999999999999875 6899999988653 233456788999999999999999999999987655
Q ss_pred -eeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccce
Q 005864 476 -SFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIA 554 (673)
Q Consensus 476 -~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~ 554 (673)
.++||||+++++|.+++.. .+++.++..++.||+.||.|||++ +|+||||||+||+++.+ .+||+|||++
T Consensus 158 ~~~lv~E~~~g~~L~~~~~~-----~l~~~~~~~~~~qi~~aL~~lH~~---giiHrDlkp~NIll~~~-~~kl~DFG~a 228 (681)
T 2pzi_A 158 VGYIVMEYVGGQSLKRSKGQ-----KLPVAEAIAYLLEILPALSYLHSI---GLVYNDLKPENIMLTEE-QLKLIDLGAV 228 (681)
T ss_dssp EEEEEEECCCCEECC----C-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSS-CEEECCCTTC
T ss_pred eeEEEEEeCCCCcHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHHHC---CCeecccChHHeEEeCC-cEEEEecccc
Confidence 6999999999999988754 489999999999999999999999 99999999999999986 8999999999
Q ss_pred eecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCcccccccccccccccccccccCCCCCC
Q 005864 555 KFLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPL 634 (673)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (673)
+..... ....||++|+|||++.+.. +.++|||||||++|||++|..||..... + .++
T Consensus 229 ~~~~~~----~~~~gt~~y~aPE~~~~~~-~~~sDi~slG~~l~~l~~g~~~~~~~~~----------------~-~~~- 285 (681)
T 2pzi_A 229 SRINSF----GYLYGTPGFQAPEIVRTGP-TVATDIYTVGRTLAALTLDLPTRNGRYV----------------D-GLP- 285 (681)
T ss_dssp EETTCC----SCCCCCTTTSCTTHHHHCS-CHHHHHHHHHHHHHHHHSCCCEETTEEC----------------S-SCC-
T ss_pred hhcccC----CccCCCccccCHHHHcCCC-CCceehhhhHHHHHHHHhCCCCCccccc----------------c-ccc-
Confidence 876543 4457899999999987654 8899999999999999999888763110 0 011
Q ss_pred CCcchHHHHHHHHHHHHHcccCCCCCCCC-HHHHHHHh
Q 005864 635 PSRNIQDKLISILEVALLCLEESPESRPT-MQTVCQLL 671 (673)
Q Consensus 635 ~~~~~~~~~~~l~~li~~cl~~dp~~Rps-~~~v~~~L 671 (673)
........+..+.+++.+||+.||++||+ ++++.+.|
T Consensus 286 ~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l 323 (681)
T 2pzi_A 286 EDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQL 323 (681)
T ss_dssp TTCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHH
T ss_pred ccccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHH
Confidence 11122234467899999999999999995 55555443
No 255
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.4e-36 Score=334.78 Aligned_cols=184 Identities=25% Similarity=0.242 Sum_probs=132.2
Q ss_pred ccccccccccccccccCCccccCCCCCCEEEccCccccccCC-ccccCCCCCCEEEeCCCCCCCcCCccccccccccEEE
Q 005864 136 YQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLP-RVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLN 214 (673)
Q Consensus 136 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 214 (673)
++|++|++++|.++ ..|..+..+++|+.|++++|++.+..+ ..+..+++|+.|++++|.+++..|..+..+++|+.|+
T Consensus 376 ~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 454 (606)
T 3vq2_A 376 NSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454 (606)
T ss_dssp SCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred CcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEE
Confidence 33333333334333 233455566667777777777765555 5677777777788877777777777777888888888
Q ss_pred ccCCcCcc-CCchhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCccccccCccccccCCCccEEEccCcccc
Q 005864 215 LSNNQFRK-EFPVELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELL 293 (673)
Q Consensus 215 l~~n~l~~-~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~ 293 (673)
+++|.+++ ..|..+..+++|+.|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|+.|++++|+++
T Consensus 455 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 88888876 36777888888888888888888777778888888888888888888888888888888888888888888
Q ss_pred CCCCCCcccc-cCccccccCCcCCCCCC
Q 005864 294 GLIPNSTGFQ-YDPIQALRGNRGLCGDV 320 (673)
Q Consensus 294 ~~~~~~~~~~-~~~~~~~~~n~~~c~~~ 320 (673)
..++....+. ......+.+|++.|+.+
T Consensus 535 ~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 535 TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 6555433333 35566788888887543
No 256
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=5.9e-37 Score=324.26 Aligned_cols=244 Identities=14% Similarity=0.112 Sum_probs=181.8
Q ss_pred cCCCccceeccCCcEEEEEEEe-CCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCC-Ccccce---------eee-
Q 005864 402 KNFDAEQCIGIGGQASVYRGEL-PSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRH-RNIVKF---------YGF- 469 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h-~niv~l---------~~~- 469 (673)
..|...+.||+|+||+||+|.+ .+|+.||||++...........+.+.+|+.++..++| +|.... .+.
T Consensus 78 ~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
T 3dzo_A 78 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLV 157 (413)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEE
T ss_pred eeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhc
Confidence 4567788999999999999975 4799999999875433333446779999999999987 222111 111
Q ss_pred -----------eec-----CCeeeEEEecccCCChHHHHhc----CCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeE
Q 005864 470 -----------CSH-----PRHSFLVYECLERGSLAEILSN----DGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIV 529 (673)
Q Consensus 470 -----------~~~-----~~~~~lv~e~~~~gsL~~~l~~----~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iv 529 (673)
+.. ....+++|+++ +++|.+++.. ......+++..+..++.|+++||+|||++ +|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ii 233 (413)
T 3dzo_A 158 KDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GLV 233 (413)
T ss_dssp ECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT---TEE
T ss_pred ccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhC---Ccc
Confidence 111 12346677755 5799999852 12235689999999999999999999999 999
Q ss_pred EecCCCCCeEeCCCCceEEecccceeecCCCCCCceeccccccccccccc----------ccCCcCcchhHHHHHHHHHH
Q 005864 530 HRDISSKNVLLSSEYEARVSDFGIAKFLKPGSSNWTEFAGTFGYVAPELA----------YTMKVTEKCDVYSFGVLALE 599 (673)
Q Consensus 530 H~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~----------~~~~~~~~~Dv~slG~il~e 599 (673)
||||||+||+++.++.+||+|||+++..... .....| +.|+|||++ .+..++.++|||||||++||
T Consensus 234 HrDiKp~NILl~~~~~~kL~DFG~a~~~~~~---~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~e 309 (413)
T 3dzo_A 234 HTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS---AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYW 309 (413)
T ss_dssp CSCCCGGGEEECTTCCEEECCGGGCEETTEE---ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHH
T ss_pred cCCcccceEEEecCCeEEEEeccceeecCCc---cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHH
Confidence 9999999999999999999999999865432 344567 999999998 55668899999999999999
Q ss_pred HHhCCCCCcccccccccccccccccccccCCCCCCCCcchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 005864 600 VIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRNIQDKLISILEVALLCLEESPESRPTMQTVCQ 669 (673)
Q Consensus 600 l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~v~~ 669 (673)
|++|+.||....... ....++..... .+.++.+++.+||+.||++|||+.|+++
T Consensus 310 lltg~~Pf~~~~~~~--------~~~~~~~~~~~--------~~~~~~~li~~~l~~dP~~Rpt~~~~l~ 363 (413)
T 3dzo_A 310 IWCADLPNTDDAALG--------GSEWIFRSCKN--------IPQPVRALLEGFLRYPKEDRLLPLQAME 363 (413)
T ss_dssp HHHSSCCCCTTGGGS--------CSGGGGSSCCC--------CCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred HHHCCCCCCCcchhh--------hHHHHHhhccc--------CCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence 999999997433211 11112221111 1245889999999999999999888754
No 257
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.6e-35 Score=326.55 Aligned_cols=296 Identities=21% Similarity=0.215 Sum_probs=212.3
Q ss_pred CCCccccCCCcccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCccccccc
Q 005864 1 MNHLSGAIPPSVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNI 80 (673)
Q Consensus 1 ~n~i~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~ 80 (673)
+|+|++..|.+|+++++|++|+|++|.++++.|..|+++++|++|+|++|++++..|.+|.++++|++|+|++|+++++.
T Consensus 42 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~ 121 (606)
T 3t6q_A 42 FNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID 121 (606)
T ss_dssp TCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGG
T ss_pred CCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCC
Confidence 47899888999999999999999999999888999999999999999999999888899999999999999999999888
Q ss_pred ccccCCCCCccEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhcccccc--ccccccccccccCCccccC
Q 005864 81 SEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLH--KLDFSLNQIVGEIPIELGN 158 (673)
Q Consensus 81 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~l~~n~i~~~~~~~l~~ 158 (673)
+..|..+++|++|+|++|.+++.....+..+++|++|++++|.+++..+..++.+++|+ .|++++|.+++..|..+..
T Consensus 122 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~ 201 (606)
T 3t6q_A 122 FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS 201 (606)
T ss_dssp GSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT
T ss_pred cchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhh
Confidence 88899999999999999999876666666689999999999999987788888888888 7788888777655443321
Q ss_pred C---------------------------------------------------CCCCEEEccCccccccCCccccCCCCCC
Q 005864 159 L---------------------------------------------------KSLNYLVLNGNKLSGNLPRVLGSLSELE 187 (673)
Q Consensus 159 l---------------------------------------------------~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 187 (673)
. .+|+.|++++|.+++..+..|..+++|+
T Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 281 (606)
T 3t6q_A 202 AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQ 281 (606)
T ss_dssp CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCS
T ss_pred ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCC
Confidence 1 0445555555555555555555566666
Q ss_pred EEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcc-cccCCCcccEEEecCc
Q 005864 188 YLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPP-QICNLESLEKLNVSHN 266 (673)
Q Consensus 188 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~-~~~~l~~L~~L~l~~N 266 (673)
+|++++|.++ .+|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+.++. .+..+++|++|++++|
T Consensus 282 ~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 360 (606)
T 3t6q_A 282 ELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360 (606)
T ss_dssp EEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS
T ss_pred EEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCC
Confidence 6666666665 4555555566666666666666555555555555555555555555543333 2555555555555555
Q ss_pred cccccC--ccccccCCCccEEEccCccccCCCC
Q 005864 267 NLSGLI--PSCFEGMHGLSCIDISYNELLGLIP 297 (673)
Q Consensus 267 ~l~~~~--~~~~~~~~~L~~l~l~~N~l~~~~~ 297 (673)
.+++.. +..+..+++|++|++++|++.+..|
T Consensus 361 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 393 (606)
T 3t6q_A 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393 (606)
T ss_dssp CCCEEEESTTTTTTCTTCCEEECCSCSCEEECT
T ss_pred ccccccCcchhcccCCCCCEEECCCCcCCcCCH
Confidence 555443 4445555555555555555554444
No 258
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.1e-35 Score=328.69 Aligned_cols=299 Identities=21% Similarity=0.243 Sum_probs=169.8
Q ss_pred CCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEEcc
Q 005864 17 NLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDIS 96 (673)
Q Consensus 17 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 96 (673)
+|++|++++|.+++..+..|+++++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 4556666666666555555666666666666666655 445555556666666666666655555555566666666666
Q ss_pred CCcccc-ccccCccccCCCcEEEcccCccCccC--ChhhhccccccccccccccccccCCccccCCCCCCEEEccCcccc
Q 005864 97 HNNFYG-EIWSSWGKCQQLGTLNFSMNNITGSI--PPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLS 173 (673)
Q Consensus 97 ~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~ 173 (673)
+|.+.+ .....+..+++|++|++++|.+++.. +..+..+++|++|++++|++.+..+..+..+++|++|++++|+++
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 665542 22333555566666666666655443 445555666666666666655555555555666666666666655
Q ss_pred ccCCc-cccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccC---CchhhhcccCCCeEeecCCcCCCCCc
Q 005864 174 GNLPR-VLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKE---FPVELEKLVQLSELDLSHNFLGGEIP 249 (673)
Q Consensus 174 ~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~ls~N~l~~~~~ 249 (673)
+..+. .+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++. .+..+..+++|+.|++++|.+++..|
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 493 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence 44332 255556666666666666555555555566666666666655541 22345555566666666666655555
Q ss_pred ccccCCCcccEEEecCccccccCccccccCCCccEEEccCccccCCCCCC-cccccCccccccCCcCCC
Q 005864 250 PQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLGLIPNS-TGFQYDPIQALRGNRGLC 317 (673)
Q Consensus 250 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~~~-~~~~~~~~~~~~~n~~~c 317 (673)
..|..+++|+.|+|++|++++..|..+..++.| .|++++|++++.+|.. ..........+.+|++.|
T Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 555666666666666666665555566666666 6666666666555442 122333445555565555
No 259
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.1e-35 Score=332.12 Aligned_cols=306 Identities=24% Similarity=0.358 Sum_probs=261.7
Q ss_pred CCccccCCCcccCCCCCCEEEeeCCccccC-----------------CCcccc--CCCCCCEEEcccCccccccCccccC
Q 005864 2 NHLSGAIPPSVGNFTNLKGLYLYSNSLSGS-----------------VPGEIG--NLMQLTNLEIDNNQLFGQIPRSLRN 62 (673)
Q Consensus 2 n~i~~~~p~~~~~l~~L~~L~L~~n~i~~~-----------------~~~~~~--~l~~L~~L~L~~n~i~~~~~~~l~~ 62 (673)
|+|++ +|+.++++++|++|+|++|.+++. +|..++ ++++|++|+|++|++.+.+|..|.+
T Consensus 193 n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 193 NNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred CCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 67888 999999999999999999999985 899999 9999999999999999999999999
Q ss_pred CCCCcEEEccCcc-ccc-ccccccCCC------CCccEEEccCCcccccccc--CccccCCCcEEEcccCccCccCChhh
Q 005864 63 LASLNRVHLEQNH-LTG-NISEVFGIY------PNLTFLDISHNNFYGEIWS--SWGKCQQLGTLNFSMNNITGSIPPEI 132 (673)
Q Consensus 63 l~~L~~L~L~~n~-i~~-~~~~~~~~l------~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l 132 (673)
+++|++|+|++|+ +++ ..+..+..+ ++|++|+|++|+++ ..+. .++++++|+.|++++|.+++.+| .+
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~ 349 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AF 349 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CC
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hh
Confidence 9999999999998 887 666666665 99999999999999 5566 89999999999999999998888 89
Q ss_pred hccccccccccccccccccCCccccCCCC-CCEEEccCccccccCCccccCCC--CCCEEEeCCCCCCCcCCcccc----
Q 005864 133 GKLYQLHKLDFSLNQIVGEIPIELGNLKS-LNYLVLNGNKLSGNLPRVLGSLS--ELEYLDLSTNKLSGSIPETLG---- 205 (673)
Q Consensus 133 ~~l~~L~~L~l~~n~i~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~~l~---- 205 (673)
..+++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|..+..++ +|+.|++++|.+++..|..+.
T Consensus 350 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~ 427 (636)
T 4eco_A 350 GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427 (636)
T ss_dssp EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence 99999999999999998 88888999999 999999999999 7777777654 899999999999988888888
Q ss_pred ---ccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccc-cCC-------CcccEEEecCccccccCcc
Q 005864 206 ---NLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQI-CNL-------ESLEKLNVSHNNLSGLIPS 274 (673)
Q Consensus 206 ---~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~-~~l-------~~L~~L~l~~N~l~~~~~~ 274 (673)
.+++|+.|++++|+++...+..+..+++|+.|+|++|.++ .+|... ... ++|+.|+|++|+++ .+|.
T Consensus 428 ~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~ 505 (636)
T 4eco_A 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSD 505 (636)
T ss_dssp SCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCG
T ss_pred ccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccCh
Confidence 7889999999999999665566777899999999999998 555443 322 28999999999998 4566
Q ss_pred ccc--cCCCccEEEccCccccCCCCCCcccccCccccccCCc
Q 005864 275 CFE--GMHGLSCIDISYNELLGLIPNSTGFQYDPIQALRGNR 314 (673)
Q Consensus 275 ~~~--~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~ 314 (673)
.+. .+++|+.|++++|++++.++............+.+|+
T Consensus 506 ~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~ 547 (636)
T 4eco_A 506 DFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQR 547 (636)
T ss_dssp GGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCB
T ss_pred hhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCc
Confidence 665 8999999999999999844444445555556665544
No 260
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-35 Score=341.98 Aligned_cols=68 Identities=25% Similarity=0.347 Sum_probs=43.3
Q ss_pred ccCCCcccEEEecCccccccCccccccCCCccEEEccCccccCCCCCCcc--------------------cccCcccccc
Q 005864 252 ICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLGLIPNSTG--------------------FQYDPIQALR 311 (673)
Q Consensus 252 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~~~~~--------------------~~~~~~~~~~ 311 (673)
|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++++.+|.... +.......+.
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~ 555 (844)
T 3j0a_A 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDIT 555 (844)
T ss_dssp SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCEEEEE
T ss_pred hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCCChhHhCCcCEEEec
Confidence 45556666777777777666666666666666666666666655543221 2234556788
Q ss_pred CCcCCCCC
Q 005864 312 GNRGLCGD 319 (673)
Q Consensus 312 ~n~~~c~~ 319 (673)
+|++.|+.
T Consensus 556 ~Np~~C~c 563 (844)
T 3j0a_A 556 HNKFICEC 563 (844)
T ss_dssp EECCCCSS
T ss_pred CCCccccc
Confidence 99999853
No 261
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=100.00 E-value=4.5e-37 Score=316.92 Aligned_cols=244 Identities=16% Similarity=0.130 Sum_probs=186.6
Q ss_pred cCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhh-----hhHHHHHHHHHHHHHhccC---------CCccccee
Q 005864 402 KNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLS-----EISVQREFLNEIKALTEIR---------HRNIVKFY 467 (673)
Q Consensus 402 ~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~-----~~~~~~~~~~e~~~l~~l~---------h~niv~l~ 467 (673)
++|++.+.||+|+||+||+|++ +|+.||||++...... .....+.+.+|+.+++.++ |||||++.
T Consensus 20 ~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~ 98 (336)
T 2vuw_A 20 EKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLN 98 (336)
T ss_dssp HHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEE
T ss_pred ccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhc
Confidence 5688899999999999999988 7899999999765321 2223467888999988886 55555555
Q ss_pred e-----------------eeec-------------CCeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHH
Q 005864 468 G-----------------FCSH-------------PRHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANAL 517 (673)
Q Consensus 468 ~-----------------~~~~-------------~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l 517 (673)
+ ++.+ ++..++||||+++|++.+.+.. ..+++..+..++.||+.||
T Consensus 99 ~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~----~~~~~~~~~~i~~qi~~aL 174 (336)
T 2vuw_A 99 SVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT----KLSSLATAKSILHQLTASL 174 (336)
T ss_dssp EEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT----TCCCHHHHHHHHHHHHHHH
T ss_pred ceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh----cCCCHHHHHHHHHHHHHHH
Confidence 4 4443 6789999999999987777644 3478999999999999999
Q ss_pred HHHh-hcCCCCeEEecCCCCCeEeCCCC--------------------ceEEecccceeecCCCCCCceecccccccccc
Q 005864 518 SYMH-HDCFPPIVHRDISSKNVLLSSEY--------------------EARVSDFGIAKFLKPGSSNWTEFAGTFGYVAP 576 (673)
Q Consensus 518 ~~LH-~~~~~~ivH~dlk~~Nill~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aP 576 (673)
+||| +. +|+||||||+|||++.++ .+||+|||+|+..... ...||+.|+||
T Consensus 175 ~~lH~~~---~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~-----~~~gt~~y~aP 246 (336)
T 2vuw_A 175 AVAEASL---RFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG-----IVVFCDVSMDE 246 (336)
T ss_dssp HHHHHHH---CCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT-----EEECCCCTTCS
T ss_pred HHHHHhC---CEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC-----cEEEeecccCh
Confidence 9999 88 999999999999999887 8999999999876532 35789999999
Q ss_pred cccccCCcCcchhHHHHHHH-HHHHHhCCCCCcccccccccccccccccccccCCCCCCCCcchHHHHHHHHHHHHHccc
Q 005864 577 ELAYTMKVTEKCDVYSFGVL-ALEVIKGKHPRDFISLLSSSSSNMNLSLNEILDPRLPLPSRNIQDKLISILEVALLCLE 655 (673)
Q Consensus 577 E~~~~~~~~~~~Dv~slG~i-l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~ 655 (673)
|++.+.. +.++||||+|++ .+++++|..||....+..... ....... ..............+.++.+++.+||+
T Consensus 247 E~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~s~~~~dli~~~L~ 321 (336)
T 2vuw_A 247 DLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLT---DKMLKQM-TFKTKCNTPAMKQIKRKIQEFHRTMLN 321 (336)
T ss_dssp GGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHHHHHHHHH---HHHHHTC-CCSSCCCSHHHHHHHHHHHHHHHHGGG
T ss_pred hhhcCCC-ccceehhhhhCCCCcccccccCCCcchhhhhHHH---Hhhhhhh-ccCcccchhhhhhcCHHHHHHHHHHhc
Confidence 9998766 889999998777 778888999986432211100 0000010 111112223455678889999999999
Q ss_pred CCCCCCCCHHHHH
Q 005864 656 ESPESRPTMQTVC 668 (673)
Q Consensus 656 ~dp~~Rps~~~v~ 668 (673)
.| |++|++
T Consensus 322 ~d-----sa~e~l 329 (336)
T 2vuw_A 322 FS-----SATDLL 329 (336)
T ss_dssp SS-----SHHHHH
T ss_pred cC-----CHHHHH
Confidence 76 999988
No 262
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.7e-35 Score=321.83 Aligned_cols=159 Identities=18% Similarity=0.211 Sum_probs=100.3
Q ss_pred cCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCc--CCccccccccccEEEccCCcCcc-CCchhhhcccC
Q 005864 157 GNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGS--IPETLGNLLKVHYLNLSNNQFRK-EFPVELEKLVQ 233 (673)
Q Consensus 157 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~ 233 (673)
..+++|++|++++|.+++..|..+..+++|+.|++++|.+++. .|..+..+++|+.|++++|++++ ..+..+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 4456666666666666665666666666666666666666642 23456666666667776666665 33334566666
Q ss_pred CCeEeecCCcCCCCCcccccCCCcccEEEecCccccccCccccccCCCccEEEccCccccCCCCC-CcccccCccccccC
Q 005864 234 LSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLGLIPN-STGFQYDPIQALRG 312 (673)
Q Consensus 234 L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~~-~~~~~~~~~~~~~~ 312 (673)
|+.|++++|.+++..|..+. ++|+.|+|++|+++.+ |..+..+++|+.|++++|+++..++. ...........+.+
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSI-PKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHD 506 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCC-CTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCS
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCccc-ChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecC
Confidence 67777777766654444333 5777777777777744 44444777788888888887765554 33444455566777
Q ss_pred CcCCCC
Q 005864 313 NRGLCG 318 (673)
Q Consensus 313 n~~~c~ 318 (673)
|++.|+
T Consensus 507 N~~~c~ 512 (562)
T 3a79_B 507 NPWDCT 512 (562)
T ss_dssp CCBCCC
T ss_pred CCcCCC
Confidence 777764
No 263
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.4e-35 Score=329.34 Aligned_cols=304 Identities=17% Similarity=0.247 Sum_probs=179.9
Q ss_pred ccCCCccc--CCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCc-ccc-ccCccccCC------CCCcEEEccCcc
Q 005864 6 GAIPPSVG--NFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQ-LFG-QIPRSLRNL------ASLNRVHLEQNH 75 (673)
Q Consensus 6 ~~~p~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~l~~l------~~L~~L~L~~n~ 75 (673)
+.+|+.++ ++++|++|+|++|.+.+.+|..|+++++|++|+|++|+ +++ .+|..+..+ ++|++|+|++|+
T Consensus 237 ~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp HHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred ccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 34777777 77888888888887777777777777888888888877 776 666666665 777777777777
Q ss_pred ccccccc--ccCCCCCccEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhcccc-ccccccccccccccC
Q 005864 76 LTGNISE--VFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQ-LHKLDFSLNQIVGEI 152 (673)
Q Consensus 76 i~~~~~~--~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~l~~n~i~~~~ 152 (673)
++. .+. .|..+++|++|+|++|.+++..+ .+..+++|+.|++++|.++ .+|..+..+++ |++|++++|.++ .+
T Consensus 317 l~~-ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~l 392 (636)
T 4eco_A 317 LKT-FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YI 392 (636)
T ss_dssp CSS-CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SC
T ss_pred CCc-cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-cc
Confidence 773 344 67777777777777777775445 6666666666666666666 55555666666 666666666665 45
Q ss_pred CccccCCC--CCCEEEccCccccccCCcccc-------CCCCCCEEEeCCCCCCCcCCccccccc---------------
Q 005864 153 PIELGNLK--SLNYLVLNGNKLSGNLPRVLG-------SLSELEYLDLSTNKLSGSIPETLGNLL--------------- 208 (673)
Q Consensus 153 ~~~l~~l~--~L~~L~L~~n~l~~~~~~~l~-------~l~~L~~L~l~~n~l~~~~~~~l~~l~--------------- 208 (673)
|..+..++ +|++|++++|.+++..|..+. .+++|+.|++++|.++...+..+..++
T Consensus 393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i 472 (636)
T 4eco_A 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472 (636)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBC
T ss_pred chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCc
Confidence 55444432 555555555555544444444 344444444444444422222222334
Q ss_pred ----------------cccEEEccCCcCccCCchhhh--cccCCCeEeecCCcCCCCCcccccCCCcccEEEe------c
Q 005864 209 ----------------KVHYLNLSNNQFRKEFPVELE--KLVQLSELDLSHNFLGGEIPPQICNLESLEKLNV------S 264 (673)
Q Consensus 209 ----------------~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l------~ 264 (673)
+|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+| +
T Consensus 473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls 550 (636)
T 4eco_A 473 PKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQ 550 (636)
T ss_dssp CSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTT
T ss_pred CHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccc
Confidence 5555555555555 3444443 55555555555555554 5555555555555555 3
Q ss_pred CccccccCccccccCCCccEEEccCccccCCCCCCcccccCccccccCCcCCC
Q 005864 265 HNNLSGLIPSCFEGMHGLSCIDISYNELLGLIPNSTGFQYDPIQALRGNRGLC 317 (673)
Q Consensus 265 ~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c 317 (673)
+|++.+.+|..+..+++|++|++++|++ +.+|.... .......+.+|+..|
T Consensus 551 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 551 GNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNIS 601 (636)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTCE
T ss_pred cCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCcc
Confidence 3455555555555566666666666665 33343222 334444555555544
No 264
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2e-34 Score=326.54 Aligned_cols=318 Identities=21% Similarity=0.254 Sum_probs=210.7
Q ss_pred CCccccCCCcccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCcccc-----ccC----ccccCCCCCcEEEcc
Q 005864 2 NHLSGAIPPSVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFG-----QIP----RSLRNLASLNRVHLE 72 (673)
Q Consensus 2 n~i~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-----~~~----~~l~~l~~L~~L~L~ 72 (673)
|+|++..|..|+++++|++|+|++|.+++..|..|.++++|+.|++++|...+ .+| ..|..+++|++|+++
T Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~ 337 (680)
T 1ziw_A 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME 337 (680)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECC
T ss_pred CCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECC
Confidence 34444444455555555555555555554444444444444444444332211 111 145556666666666
Q ss_pred CcccccccccccCCCCCccEEEccCC----------------------------ccccccccCccccCCCcEEEcccCcc
Q 005864 73 QNHLTGNISEVFGIYPNLTFLDISHN----------------------------NFYGEIWSSWGKCQQLGTLNFSMNNI 124 (673)
Q Consensus 73 ~n~i~~~~~~~~~~l~~L~~L~L~~n----------------------------~i~~~~~~~~~~l~~L~~L~L~~n~l 124 (673)
+|++.++.+..|..+++|++|++++| +++++.+..+..+++|+.|++++|.+
T Consensus 338 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 417 (680)
T 1ziw_A 338 DNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 417 (680)
T ss_dssp SCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcC
Confidence 66666666666666666666555544 34444445555566666666666666
Q ss_pred CccCC-hhhhccccccccccccccccccCCccccCCCCCCEEEccCcccc--ccCCccccCCCCCCEEEeCCCCCCCcCC
Q 005864 125 TGSIP-PEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLS--GNLPRVLGSLSELEYLDLSTNKLSGSIP 201 (673)
Q Consensus 125 ~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 201 (673)
++.++ ..+.++++|++|++++|++.+..+..+..+++|+.|++++|.++ +..|..|..+++|+.|++++|.+++..+
T Consensus 418 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~ 497 (680)
T 1ziw_A 418 GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND 497 (680)
T ss_dssp EEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCCh
Confidence 54333 45556666666666666666555566666666666666666665 3566777888888888888888887777
Q ss_pred ccccccccccEEEccCCcCccCCc--------hhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCccccccCc
Q 005864 202 ETLGNLLKVHYLNLSNNQFRKEFP--------VELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGLIP 273 (673)
Q Consensus 202 ~~l~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 273 (673)
..|..+++|+.|++++|++++..+ ..|..+++|+.|+|++|.++...+..|.++++|+.|+|++|+++++.+
T Consensus 498 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~ 577 (680)
T 1ziw_A 498 DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred hhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCH
Confidence 778888888888888888876422 236778888899999998885544568889999999999999998888
Q ss_pred cccccCCCccEEEccCccccCCCCCCc--ccccCccccccCCcCCCCC
Q 005864 274 SCFEGMHGLSCIDISYNELLGLIPNST--GFQYDPIQALRGNRGLCGD 319 (673)
Q Consensus 274 ~~~~~~~~L~~l~l~~N~l~~~~~~~~--~~~~~~~~~~~~n~~~c~~ 319 (673)
..|..+++|+.|++++|++++.+|... .+.......+.+|++.|+.
T Consensus 578 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp TTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred hHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 888889999999999999988877644 3556667788999999964
No 265
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=317.87 Aligned_cols=118 Identities=25% Similarity=0.248 Sum_probs=71.6
Q ss_pred CCccccCCCcccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccc
Q 005864 2 NHLSGAIPPSVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNIS 81 (673)
Q Consensus 2 n~i~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~ 81 (673)
|+|+ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..|.+|.++++|++|+|++|+|+.++.
T Consensus 10 n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~ 86 (520)
T 2z7x_B 10 NGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC 86 (520)
T ss_dssp SCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEEC
T ss_pred CCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCc
Confidence 4555 4555554 566666666666665555666666666666666666665556666666666666666666664433
Q ss_pred cccCCCCCccEEEccCCccccc-cccCccccCCCcEEEcccCccC
Q 005864 82 EVFGIYPNLTFLDISHNNFYGE-IWSSWGKCQQLGTLNFSMNNIT 125 (673)
Q Consensus 82 ~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~ 125 (673)
. .+++|++|+|++|.+++. .+..++++++|++|++++|.++
T Consensus 87 ~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 87 H---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp C---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred c---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc
Confidence 3 556666666666666542 3455666666666666666554
No 266
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=321.30 Aligned_cols=318 Identities=21% Similarity=0.226 Sum_probs=216.8
Q ss_pred CCCccccCCCcccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCccccccc
Q 005864 1 MNHLSGAIPPSVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNI 80 (673)
Q Consensus 1 ~n~i~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~ 80 (673)
.|+|++..+.+|.++++|++|+|++|.+++..++.|+++++|++|+|++|.++...+.+|.++++|++|++++|+++.+.
T Consensus 37 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 116 (570)
T 2z63_A 37 FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116 (570)
T ss_dssp SCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCST
T ss_pred CCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCC
Confidence 36778777778888888888888888888777788888888888888888888777778888888888888888888777
Q ss_pred ccccCCCCCccEEEccCCccccc-cccCccccCCCcEEEcccCccCccCChhhhcccc----------------------
Q 005864 81 SEVFGIYPNLTFLDISHNNFYGE-IWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQ---------------------- 137 (673)
Q Consensus 81 ~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~---------------------- 137 (673)
...|+.+++|++|+|++|.+++. .+..++++++|++|++++|.+++..+..++.+++
T Consensus 117 ~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~ 196 (570)
T 2z63_A 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196 (570)
T ss_dssp TCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT
T ss_pred CccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHH
Confidence 66678888888888888887763 3677777888888888877776544443333333
Q ss_pred --------------------------------------------------------------------------------
Q 005864 138 -------------------------------------------------------------------------------- 137 (673)
Q Consensus 138 -------------------------------------------------------------------------------- 137 (673)
T Consensus 197 ~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~ 276 (570)
T 2z63_A 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276 (570)
T ss_dssp TTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTT
T ss_pred hccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchh
Confidence
Q ss_pred -------ccccccccccccccCCccc------------------------------------------cCCCCCCEEEcc
Q 005864 138 -------LHKLDFSLNQIVGEIPIEL------------------------------------------GNLKSLNYLVLN 168 (673)
Q Consensus 138 -------L~~L~l~~n~i~~~~~~~l------------------------------------------~~l~~L~~L~L~ 168 (673)
|+.|++++|.+. .+|..+ ..+++|++|+++
T Consensus 277 ~~~~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~ 355 (570)
T 2z63_A 277 LFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLS 355 (570)
T ss_dssp TTGGGTTCSEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECC
T ss_pred hhcCcCcccEEEecCccch-hhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCc
Confidence 333333333322 111111 233455555555
Q ss_pred CccccccC--Ccc-----------------------ccCCCCCCEEEeCCCCCCCcCC-ccccccccccEEEccCCcCcc
Q 005864 169 GNKLSGNL--PRV-----------------------LGSLSELEYLDLSTNKLSGSIP-ETLGNLLKVHYLNLSNNQFRK 222 (673)
Q Consensus 169 ~n~l~~~~--~~~-----------------------l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~ 222 (673)
+|.+++.. +.. +..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+++
T Consensus 356 ~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 435 (570)
T 2z63_A 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435 (570)
T ss_dssp SSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE
T ss_pred CCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc
Confidence 55554322 223 4555566666666666554443 356666777777777777776
Q ss_pred CCchhhhcccCCCeEeecCCcCC-CCCcccccCCCcccEEEecCccccccCccccccCCCccEEEccCccccCCCCCC-c
Q 005864 223 EFPVELEKLVQLSELDLSHNFLG-GEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLGLIPNS-T 300 (673)
Q Consensus 223 ~~~~~~~~l~~L~~L~ls~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~~~-~ 300 (673)
..|..+..+++|+.|++++|.+. +.+|..+..+++|+.|++++|++++..|..|..+++|++|++++|++++.+|.. .
T Consensus 436 ~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 515 (570)
T 2z63_A 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515 (570)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred cchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhh
Confidence 66777777777777777777776 456677777777777888777777777777777788888888888877776653 2
Q ss_pred ccccCccccccCCcCCCCC
Q 005864 301 GFQYDPIQALRGNRGLCGD 319 (673)
Q Consensus 301 ~~~~~~~~~~~~n~~~c~~ 319 (673)
.........+.+|++.|..
T Consensus 516 ~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 516 RLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp TCTTCCEEECCSSCBCCCT
T ss_pred cccCCcEEEecCCcccCCC
Confidence 3444556667777776653
No 267
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=8e-34 Score=327.91 Aligned_cols=296 Identities=22% Similarity=0.260 Sum_probs=254.4
Q ss_pred CCCccccCCCcccCCCCCCEEEeeCCcc-ccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccc
Q 005864 1 MNHLSGAIPPSVGNFTNLKGLYLYSNSL-SGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGN 79 (673)
Q Consensus 1 ~n~i~~~~p~~~~~l~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~ 79 (673)
.|+|++..|.+|+++++|++|+|++|.. ..+.|..|.++++|++|+|++|.+.+..|.+|.++++|++|+|++|.+++.
T Consensus 33 ~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 112 (844)
T 3j0a_A 33 FNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA 112 (844)
T ss_dssp SCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSC
T ss_pred CCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcc
Confidence 4788888899999999999999999954 444488899999999999999999988899999999999999999999874
Q ss_pred ccc--ccCCCCCccEEEccCCccccccc-cCccccCCCcEEEcccCccCccCChhhhcc--ccccccccccccccccCCc
Q 005864 80 ISE--VFGIYPNLTFLDISHNNFYGEIW-SSWGKCQQLGTLNFSMNNITGSIPPEIGKL--YQLHKLDFSLNQIVGEIPI 154 (673)
Q Consensus 80 ~~~--~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~l~~n~i~~~~~~ 154 (673)
.+. .|..+++|++|+|++|.+++..+ ..|+++++|++|+|++|.+++..+..+..+ ++|+.|++++|.+.+..+.
T Consensus 113 ~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~ 192 (844)
T 3j0a_A 113 VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV 192 (844)
T ss_dssp CSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCC
T ss_pred cccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccccc
Confidence 443 48899999999999999987654 578899999999999999998888888877 8899999999999887777
Q ss_pred cccCCCC------CCEEEccCccccccCCccccC--------------------------------------CCCCCEEE
Q 005864 155 ELGNLKS------LNYLVLNGNKLSGNLPRVLGS--------------------------------------LSELEYLD 190 (673)
Q Consensus 155 ~l~~l~~------L~~L~L~~n~l~~~~~~~l~~--------------------------------------l~~L~~L~ 190 (673)
.+..+++ |+.|++++|.+++..+..+.. .++|+.|+
T Consensus 193 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~ 272 (844)
T 3j0a_A 193 DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD 272 (844)
T ss_dssp CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEE
T ss_pred chhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEE
Confidence 7766655 999999999876554433321 26899999
Q ss_pred eCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCccccc
Q 005864 191 LSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSG 270 (673)
Q Consensus 191 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 270 (673)
+++|.+.+..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|++++
T Consensus 273 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 352 (844)
T 3j0a_A 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI 352 (844)
T ss_dssp CTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCC
T ss_pred CCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCc
Confidence 99999988888889999999999999999998888899999999999999999998888899999999999999999998
Q ss_pred cCccccccCCCccEEEccCccccCCC
Q 005864 271 LIPSCFEGMHGLSCIDISYNELLGLI 296 (673)
Q Consensus 271 ~~~~~~~~~~~L~~l~l~~N~l~~~~ 296 (673)
..+..|..+++|+.|++++|.+++..
T Consensus 353 ~~~~~~~~l~~L~~L~Ls~N~l~~i~ 378 (844)
T 3j0a_A 353 IQDQTFKFLEKLQTLDLRDNALTTIH 378 (844)
T ss_dssp CCSSCSCSCCCCCEEEEETCCSCCCS
T ss_pred cChhhhcCCCCCCEEECCCCCCCccc
Confidence 88888999999999999999988643
No 268
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.2e-34 Score=319.47 Aligned_cols=171 Identities=19% Similarity=0.243 Sum_probs=157.6
Q ss_pred ChhhhccccccccccccccccccCC-ccccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCC-cCCccccc
Q 005864 129 PPEIGKLYQLHKLDFSLNQIVGEIP-IELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSG-SIPETLGN 206 (673)
Q Consensus 129 ~~~l~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~ 206 (673)
+..+..+++|+.|++++|++.+..+ ..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++ ..|..+..
T Consensus 392 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 471 (606)
T 3vq2_A 392 SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471 (606)
T ss_dssp CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc
Confidence 4567889999999999999997777 688999999999999999999899999999999999999999987 47889999
Q ss_pred cccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCccccccCccccccCC-CccEE
Q 005864 207 LLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMH-GLSCI 285 (673)
Q Consensus 207 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~L~~l 285 (673)
+++|+.|++++|++++..|..|..+++|+.|++++|++++..|..+..+++|+.|+|++|+++.+ |..+..++ +|+.|
T Consensus 472 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-p~~~~~l~~~L~~l 550 (606)
T 3vq2_A 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS-KGILQHFPKSLAFF 550 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCE-ESCGGGSCTTCCEE
T ss_pred CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCccc-CHhHhhhcccCcEE
Confidence 99999999999999999999999999999999999999988899999999999999999999955 66688887 59999
Q ss_pred EccCccccCCCCCCc
Q 005864 286 DISYNELLGLIPNST 300 (673)
Q Consensus 286 ~l~~N~l~~~~~~~~ 300 (673)
++++|++.+.++..+
T Consensus 551 ~l~~N~~~c~c~~~~ 565 (606)
T 3vq2_A 551 NLTNNSVACICEHQK 565 (606)
T ss_dssp ECCSCCCCCSSTTHH
T ss_pred EccCCCcccCCccHH
Confidence 999999999887643
No 269
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.8e-34 Score=300.03 Aligned_cols=290 Identities=21% Similarity=0.186 Sum_probs=194.9
Q ss_pred ccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCcc
Q 005864 12 VGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLT 91 (673)
Q Consensus 12 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 91 (673)
+.++++|++|+|++|.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|+++.++...|..+++|+
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 144 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 144 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence 46666666666666666655555666666666666666666655556666666666666666666666555566666666
Q ss_pred EEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccccCCccccCCCCCCEEEccCcc
Q 005864 92 FLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNK 171 (673)
Q Consensus 92 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~ 171 (673)
+|+|++|.+++..+..+.++++|++|++++|.+++. .+..+++|+.|++++|.+++ +...++|+.|++++|.
T Consensus 145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~ 216 (390)
T 3o6n_A 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNS 216 (390)
T ss_dssp EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSC
T ss_pred EEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCCCe
Confidence 666666666665556666666666666666666643 23445556666666665542 1233567777777777
Q ss_pred ccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCccc
Q 005864 172 LSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQ 251 (673)
Q Consensus 172 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~ 251 (673)
++.... ...++|+.|++++|.+++. ..+..+++|+.|++++|.+++..|..|..+++|+.|++++|+++ .+|..
T Consensus 217 l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~ 290 (390)
T 3o6n_A 217 INVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLY 290 (390)
T ss_dssp CCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECS
T ss_pred eeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcc
Confidence 764422 2246788888888888743 46778888888888888888777888888888888888888887 45666
Q ss_pred ccCCCcccEEEecCccccccCccccccCCCccEEEccCccccCCCCCCcccccCccccccCCcCCCC
Q 005864 252 ICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLGLIPNSTGFQYDPIQALRGNRGLCG 318 (673)
Q Consensus 252 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~ 318 (673)
+..+++|+.|++++|++++. |..+..+++|+.|++++|+++... ...+.......+.+|++.|.
T Consensus 291 ~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 291 GQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp SSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred cCCCCCCCEEECCCCcceec-CccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCccch
Confidence 67788888888888888754 556777888888888888887664 23344555666777776663
No 270
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.9e-34 Score=322.68 Aligned_cols=276 Identities=21% Similarity=0.255 Sum_probs=193.3
Q ss_pred cCCCccc--CCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCc-ccc-ccCccccCCC-------CCcEEEccCcc
Q 005864 7 AIPPSVG--NFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQ-LFG-QIPRSLRNLA-------SLNRVHLEQNH 75 (673)
Q Consensus 7 ~~p~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~l~~l~-------~L~~L~L~~n~ 75 (673)
.+|+.++ ++++|++|+|++|.+.+.+|..|.++++|+.|+|++|+ +++ .+|..+..++ +|+.|+|++|+
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 5999988 99999999999999999999999999999999999998 887 6777666555 99999999999
Q ss_pred cccccc-cccCCCCCccEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhcccc-ccccccccccccccCC
Q 005864 76 LTGNIS-EVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQ-LHKLDFSLNQIVGEIP 153 (673)
Q Consensus 76 i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~l~~n~i~~~~~ 153 (673)
++.++. ..|..+++|++|+|++|.++ ..+ .+..+++|+.|+|++|.++ .+|..+..+++ |+.|+|++|.++ .+|
T Consensus 560 L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp 635 (876)
T 4ecn_A 560 LEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP 635 (876)
T ss_dssp CCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred CCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc
Confidence 994433 28999999999999999998 444 8899999999999999999 78888999998 999999999988 677
Q ss_pred ccccCCCC--CCEEEccCccccccCCccc---c--CCCCCCEEEeCCCCCCCcCCccc-cccccccEEEccCCcCccCCc
Q 005864 154 IELGNLKS--LNYLVLNGNKLSGNLPRVL---G--SLSELEYLDLSTNKLSGSIPETL-GNLLKVHYLNLSNNQFRKEFP 225 (673)
Q Consensus 154 ~~l~~l~~--L~~L~L~~n~l~~~~~~~l---~--~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~ 225 (673)
..+..++. |+.|+|++|++++.+|... . .+++|+.|+|++|.++ .+|..+ ..+++|+.|+|++|+++...+
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~ 714 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPE 714 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCT
T ss_pred hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccCh
Confidence 77666543 7777777777765444221 1 2235555555555555 333332 345555555555555552222
Q ss_pred hhhhc-------ccCCCeEeecCCcCCCCCccccc--CCCcccEEEecCccccccCccccccCCCccEEEccC
Q 005864 226 VELEK-------LVQLSELDLSHNFLGGEIPPQIC--NLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISY 289 (673)
Q Consensus 226 ~~~~~-------l~~L~~L~ls~N~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~ 289 (673)
..+.. +++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCC
T ss_pred HHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCC
Confidence 22211 125555555555555 4444444 55555555555555554 344455555555555543
No 271
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.8e-34 Score=323.96 Aligned_cols=305 Identities=23% Similarity=0.310 Sum_probs=261.6
Q ss_pred CCccccCCCcccCCCCCCEEEeeCCcccc-----------------CCCcccc--CCCCCCEEEcccCccccccCccccC
Q 005864 2 NHLSGAIPPSVGNFTNLKGLYLYSNSLSG-----------------SVPGEIG--NLMQLTNLEIDNNQLFGQIPRSLRN 62 (673)
Q Consensus 2 n~i~~~~p~~~~~l~~L~~L~L~~n~i~~-----------------~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~l~~ 62 (673)
|+|++ +|+.|+++++|++|+|++|.+++ .+|..++ ++++|++|+|++|++.+.+|..|.+
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 77888 99999999999999999999998 3888887 9999999999999999999999999
Q ss_pred CCCCcEEEccCcc-ccc-cccccc-------CCCCCccEEEccCCcccccccc--CccccCCCcEEEcccCccCccCChh
Q 005864 63 LASLNRVHLEQNH-LTG-NISEVF-------GIYPNLTFLDISHNNFYGEIWS--SWGKCQQLGTLNFSMNNITGSIPPE 131 (673)
Q Consensus 63 l~~L~~L~L~~n~-i~~-~~~~~~-------~~l~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~ 131 (673)
+++|+.|+|++|+ +++ ..+..+ ..+++|++|+|++|.++ ..+. .++++++|+.|+|++|.++ .+| .
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~ 590 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A 590 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-h
Confidence 9999999999998 887 455444 45569999999999999 5566 8999999999999999999 677 8
Q ss_pred hhccccccccccccccccccCCccccCCCC-CCEEEccCccccccCCccccCCCC--CCEEEeCCCCCCCcCCccc---c
Q 005864 132 IGKLYQLHKLDFSLNQIVGEIPIELGNLKS-LNYLVLNGNKLSGNLPRVLGSLSE--LEYLDLSTNKLSGSIPETL---G 205 (673)
Q Consensus 132 l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~l~~n~l~~~~~~~l---~ 205 (673)
|+.+++|+.|+|++|+++ .+|..+..+++ |+.|+|++|.++ .+|..+..++. |+.|++++|.+.+.+|... .
T Consensus 591 ~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp CCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred hcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence 999999999999999999 88888999999 999999999999 77888877654 9999999999987665322 2
Q ss_pred --ccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccCC--------CcccEEEecCccccccCccc
Q 005864 206 --NLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNL--------ESLEKLNVSHNNLSGLIPSC 275 (673)
Q Consensus 206 --~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l--------~~L~~L~l~~N~l~~~~~~~ 275 (673)
.+++|+.|+|++|+++...+..+..+++|+.|+|++|.+. .+|..+... ++|+.|+|++|+++ .+|..
T Consensus 669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~ 746 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDD 746 (876)
T ss_dssp TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGG
T ss_pred cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHH
Confidence 3458999999999999655555668999999999999999 666654432 39999999999999 55777
Q ss_pred cc--cCCCccEEEccCccccCCCCCCcccccCccccccCCc
Q 005864 276 FE--GMHGLSCIDISYNELLGLIPNSTGFQYDPIQALRGNR 314 (673)
Q Consensus 276 ~~--~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~ 314 (673)
+. .+++|+.|+|++|++++.++............+.+|+
T Consensus 747 l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp GSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCB
T ss_pred hhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCC
Confidence 76 9999999999999999954445555556666676655
No 272
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2e-34 Score=293.30 Aligned_cols=255 Identities=29% Similarity=0.472 Sum_probs=173.9
Q ss_pred CCcEEEccCccccc--ccccccCCCCCccEEEccC-CccccccccCccccCCCcEEEcccCccCccCChhhhcccccccc
Q 005864 65 SLNRVHLEQNHLTG--NISEVFGIYPNLTFLDISH-NNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKL 141 (673)
Q Consensus 65 ~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 141 (673)
+++.|+|++|.+++ ..+..|..+++|++|+|++ |.+.+..+..++++++|++|+|++|.+++..|..+.++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 45555555555554 4444555555555555553 55555555555555566666666666655556666666666666
Q ss_pred ccccccccccCCccccCCCCCCEEEccCccccccCCccccCCC-CCCEEEeCCCCCCCcCCccccccccccEEEccCCcC
Q 005864 142 DFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGSLS-ELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQF 220 (673)
Q Consensus 142 ~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 220 (673)
++++|.+++..|..+..+++|++|++++|++++.+|..+..++ +|+.|++++|.+++.+|..+..++ |+.|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 6666666656666666666666666666666666666666665 677777777777666676676665 77777777777
Q ss_pred ccCCchhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCccccccCccccccCCCccEEEccCccccCCCCCCc
Q 005864 221 RKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLGLIPNST 300 (673)
Q Consensus 221 ~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~~~~ 300 (673)
++..|..|..+++|+.|++++|.+++..|. +..+++|++|++++|++++..|..+..+++|+.|++++|++++.+|...
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 777777777777777777777777755444 6777888888888888887778888888888888888888888787776
Q ss_pred ccccCccccccCCcCCCCCCC
Q 005864 301 GFQYDPIQALRGNRGLCGDVE 321 (673)
Q Consensus 301 ~~~~~~~~~~~~n~~~c~~~~ 321 (673)
.+.......+.+|+++||.|.
T Consensus 289 ~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 289 NLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp TGGGSCGGGTCSSSEEESTTS
T ss_pred cccccChHHhcCCCCccCCCC
Confidence 666677777888888888764
No 273
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=309.06 Aligned_cols=128 Identities=19% Similarity=0.213 Sum_probs=112.9
Q ss_pred CCCccccCCCcccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccc-
Q 005864 1 MNHLSGAIPPSVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGN- 79 (673)
Q Consensus 1 ~n~i~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~- 79 (673)
.|+|++..|..|.++++|++|+|++|++++..|..|+++++|++|+|++|+|+ .+|.. .+++|++|+|++|+++++
T Consensus 30 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~ 106 (520)
T 2z7x_B 30 QNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALP 106 (520)
T ss_dssp SSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCC
T ss_pred CCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCcccccc
Confidence 47899888899999999999999999999888999999999999999999998 45554 899999999999999975
Q ss_pred cccccCCCCCccEEEccCCccccccccCccccCCC--cEEEcccCcc--CccCChhhhc
Q 005864 80 ISEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQL--GTLNFSMNNI--TGSIPPEIGK 134 (673)
Q Consensus 80 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~l~~ 134 (673)
.+..|..+++|++|+|++|.+++ ..+..+++| +.|++++|.+ .+..|..+..
T Consensus 107 ~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~ 162 (520)
T 2z7x_B 107 ICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD 162 (520)
T ss_dssp CCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTT
T ss_pred chhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccc
Confidence 56899999999999999999985 457778888 9999999999 6566655554
No 274
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=4.7e-33 Score=286.06 Aligned_cols=268 Identities=21% Similarity=0.220 Sum_probs=207.8
Q ss_pred CCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEEcc
Q 005864 17 NLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDIS 96 (673)
Q Consensus 17 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 96 (673)
+++.++++++.++ .+|..+. ++|+.|+|++|++++..+..|.++++|++|+|++|+++++.+..|..+++|++|+|+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 6788888888887 4565554 578888888888887666678888888888888888887777788888888888888
Q ss_pred CCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccc--cCCccccCCCCCCEEEccCccccc
Q 005864 97 HNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVG--EIPIELGNLKSLNYLVLNGNKLSG 174 (673)
Q Consensus 97 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~--~~~~~l~~l~~L~~L~L~~n~l~~ 174 (673)
+|.++..+...+ ++|++|++++|.+++..+..+.++++|+.|++++|.+.. ..+..+..+++|++|++++|.++.
T Consensus 109 ~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 888875443332 678888888888887777778888888888888888753 566777788888888888888874
Q ss_pred cCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccC
Q 005864 175 NLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICN 254 (673)
Q Consensus 175 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~ 254 (673)
+|..+. ++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++ .+|..+..
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 444332 77888888888888777778888888888888888888777777888888888888888887 67777888
Q ss_pred CCcccEEEecCccccccCccccccC------CCccEEEccCccccC
Q 005864 255 LESLEKLNVSHNNLSGLIPSCFEGM------HGLSCIDISYNELLG 294 (673)
Q Consensus 255 l~~L~~L~l~~N~l~~~~~~~~~~~------~~L~~l~l~~N~l~~ 294 (673)
+++|++|++++|++++..+..|... +.|+.+++++|++..
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 8888888888888887777666533 677888888888764
No 275
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.2e-34 Score=315.31 Aligned_cols=206 Identities=24% Similarity=0.260 Sum_probs=165.5
Q ss_pred CCcEEEcccCccCccC--ChhhhccccccccccccccccccCCccccCCCCCCEEEccCccccccCC-ccccCCCCCCEE
Q 005864 113 QLGTLNFSMNNITGSI--PPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLP-RVLGSLSELEYL 189 (673)
Q Consensus 113 ~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L 189 (673)
+|+.|++++|.+++.. +..+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+++..+ ..+..+++|++|
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 426 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence 3444444444444322 4455666777777777777764433 38888999999999999987655 578899999999
Q ss_pred EeCCCCCCCcCCccccccccccEEEccCCcCc-cCCchhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCccc
Q 005864 190 DLSTNKLSGSIPETLGNLLKVHYLNLSNNQFR-KEFPVELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNL 268 (673)
Q Consensus 190 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 268 (673)
++++|.+.+..|..+..+++|+.|++++|.++ +..|..+..+++|+.|++++|.+++..|..|..+++|+.|++++|++
T Consensus 427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506 (570)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence 99999999888999999999999999999998 56888999999999999999999988899999999999999999999
Q ss_pred cccCccccccCCCccEEEccCccccCCCCCCccc-ccC--ccccccCCcCCCCCC
Q 005864 269 SGLIPSCFEGMHGLSCIDISYNELLGLIPNSTGF-QYD--PIQALRGNRGLCGDV 320 (673)
Q Consensus 269 ~~~~~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~-~~~--~~~~~~~n~~~c~~~ 320 (673)
++..+..|..+++|+.|++++|++++.+|..... .+. ....+.+.+ .|..+
T Consensus 507 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~~~~~~~~~-~C~~~ 560 (570)
T 2z63_A 507 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA-KCSGS 560 (570)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGEESCC-BBTTT
T ss_pred CCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHHhccccCCCch-hhCCC
Confidence 9998899999999999999999999999876544 222 122334444 66554
No 276
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=3.2e-33 Score=287.55 Aligned_cols=266 Identities=25% Similarity=0.252 Sum_probs=221.5
Q ss_pred CCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEEcc
Q 005864 17 NLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDIS 96 (673)
Q Consensus 17 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 96 (673)
+++.++++++.++ .+|..+. ++|+.|+|++|.++...+..|.++++|++|+|++|+++++.+..|..+++|++|+|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 6889999999888 5666553 688999999999887777888999999999999999988888888999999999999
Q ss_pred CCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccc--cCCccccCCCCCCEEEccCccccc
Q 005864 97 HNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVG--EIPIELGNLKSLNYLVLNGNKLSG 174 (673)
Q Consensus 97 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~--~~~~~l~~l~~L~~L~L~~n~l~~ 174 (673)
+|.++.++...+ ++|++|++++|.++...+..|..+++|+.|++++|.++. ..+..+..+ +|++|++++|++++
T Consensus 111 ~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 998885544333 788999999999987777778889999999999998863 567777777 89999999999885
Q ss_pred cCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccC
Q 005864 175 NLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICN 254 (673)
Q Consensus 175 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~ 254 (673)
+|..+. ++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.++ .+|..+..
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 444443 68889999999998777788888899999999999998887778888899999999999988 77888888
Q ss_pred CCcccEEEecCccccccCccccccC------CCccEEEccCcccc
Q 005864 255 LESLEKLNVSHNNLSGLIPSCFEGM------HGLSCIDISYNELL 293 (673)
Q Consensus 255 l~~L~~L~l~~N~l~~~~~~~~~~~------~~L~~l~l~~N~l~ 293 (673)
+++|+.|++++|++++..+..|... +.|+.|++++|++.
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 8999999999999988877777653 67889999999887
No 277
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.3e-33 Score=313.60 Aligned_cols=298 Identities=20% Similarity=0.167 Sum_probs=179.6
Q ss_pred CccccCCCcccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCccccccccc
Q 005864 3 HLSGAIPPSVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISE 82 (673)
Q Consensus 3 ~i~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~ 82 (673)
.++...+..++++++|++|+|++|.|++..+..|+.+++|++|+|++|.+++..|..|.++++|++|+|++|.++.+++.
T Consensus 62 ~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 141 (597)
T 3oja_B 62 TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 141 (597)
T ss_dssp EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHH
Confidence 34444444467777788888888877777777777777888888888877777777777777888888888877777777
Q ss_pred ccCCCCCccEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccccCCccccCCCCC
Q 005864 83 VFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSL 162 (673)
Q Consensus 83 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L 162 (673)
.|..+++|++|+|++|.+++..+..|+++++|++|+|++|.+++.. +..+++|+.|++++|.+++. ...++|
T Consensus 142 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l-----~~~~~L 213 (597)
T 3oja_B 142 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL-----AIPIAV 213 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEE-----ECCTTC
T ss_pred HhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccc-----cCCchh
Confidence 7777778888888888777777777777778888888887777542 34455666666666655421 222345
Q ss_pred CEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCC
Q 005864 163 NYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHN 242 (673)
Q Consensus 163 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N 242 (673)
+.|++++|.++...+.. .++|+.|+|++|.+++ +..+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|
T Consensus 214 ~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 288 (597)
T 3oja_B 214 EELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288 (597)
T ss_dssp SEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS
T ss_pred heeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC
Confidence 55555555554322211 1355555555555553 244555555555555555555555555555555555555555
Q ss_pred cCCCCCcccccCCCcccEEEecCccccccCccccccCCCccEEEccCccccCCCCCCcccccCccccccCCcCCC
Q 005864 243 FLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLGLIPNSTGFQYDPIQALRGNRGLC 317 (673)
Q Consensus 243 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c 317 (673)
.+++ +|..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++++..+ ..+.......+.+|++.|
T Consensus 289 ~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 289 RLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLKL--STHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCCC--CTTCCCSEEECCSSCEEH
T ss_pred CCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCcCh--hhcCCCCEEEeeCCCCCC
Confidence 5552 34444455555555555555553 24444555555555555555554432 122233334444554444
No 278
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.6e-34 Score=294.01 Aligned_cols=253 Identities=31% Similarity=0.487 Sum_probs=212.0
Q ss_pred CCCCEEEcccCcccc--ccCccccCCCCCcEEEccC-cccccccccccCCCCCccEEEccCCccccccccCccccCCCcE
Q 005864 40 MQLTNLEIDNNQLFG--QIPRSLRNLASLNRVHLEQ-NHLTGNISEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGT 116 (673)
Q Consensus 40 ~~L~~L~L~~n~i~~--~~~~~l~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 116 (673)
.+++.|+|++|++.+ .+|..|.++++|++|+|++ |.+.+..+..|..+++|++|+|++|.+++..+..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467788888888876 6777788888888888884 7777777777788888888888888887777777888888888
Q ss_pred EEcccCccCccCChhhhccccccccccccccccccCCccccCCC-CCCEEEccCccccccCCccccCCCCCCEEEeCCCC
Q 005864 117 LNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLK-SLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNK 195 (673)
Q Consensus 117 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 195 (673)
|+|++|.+++..|..+..+++|++|++++|++++.+|..+..++ +|+.|++++|++++..|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 88888888877888888888888888888888878888888887 888888888888888888888876 8899999988
Q ss_pred CCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCccccccCccc
Q 005864 196 LSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSC 275 (673)
Q Consensus 196 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 275 (673)
+++..|..+..+++|+.|++++|.+++..+. +..+++|+.|++++|.+++.+|..+..+++|+.|+|++|++++.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 8888888888888999999999998865554 777889999999999998889999999999999999999999888876
Q ss_pred cccCCCccEEEccCcc-ccCC
Q 005864 276 FEGMHGLSCIDISYNE-LLGL 295 (673)
Q Consensus 276 ~~~~~~L~~l~l~~N~-l~~~ 295 (673)
..+++|+.+++++|+ ++|.
T Consensus 288 -~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 288 -GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp -TTGGGSCGGGTCSSSEEEST
T ss_pred -ccccccChHHhcCCCCccCC
Confidence 788999999999998 5553
No 279
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.2e-33 Score=308.84 Aligned_cols=303 Identities=21% Similarity=0.239 Sum_probs=224.6
Q ss_pred CCccccCCCcccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccc
Q 005864 2 NHLSGAIPPSVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNIS 81 (673)
Q Consensus 2 n~i~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~ 81 (673)
|+|++ +|..+. ++|++|+|++|.|++..+..|.++++|++|+|++|+|++..|.+|.++++|++|+|++|+|+.++.
T Consensus 41 ~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~ 117 (562)
T 3a79_B 41 RNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC 117 (562)
T ss_dssp SCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECS
T ss_pred CCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCc
Confidence 55663 666664 678888888888887777778888888888888888877777778888888888888888776554
Q ss_pred cccCCCCCccEEEccCCcccccc-ccCccccCCCcEEEcccCccCccCChhhhccccc--cccccccccc--cccCCccc
Q 005864 82 EVFGIYPNLTFLDISHNNFYGEI-WSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQL--HKLDFSLNQI--VGEIPIEL 156 (673)
Q Consensus 82 ~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~l~~n~i--~~~~~~~l 156 (673)
. .+++|++|+|++|++++.. +..|+++++|++|++++|.++.. .+..+++| ++|++++|.+ ++..|..+
T Consensus 118 ~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l 191 (562)
T 3a79_B 118 C---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESL 191 (562)
T ss_dssp C---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEE
T ss_pred c---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccc
Confidence 4 6777888888888877644 46777778888888888777643 33444444 7777777766 44444333
Q ss_pred cCCC----------------------------------------------------------------------------
Q 005864 157 GNLK---------------------------------------------------------------------------- 160 (673)
Q Consensus 157 ~~l~---------------------------------------------------------------------------- 160 (673)
..+.
T Consensus 192 ~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~ 271 (562)
T 3a79_B 192 QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271 (562)
T ss_dssp EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH
T ss_pred cccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH
Confidence 3322
Q ss_pred -----CCCEEEccCccccccCCccc-----------------------------------------------------cC
Q 005864 161 -----SLNYLVLNGNKLSGNLPRVL-----------------------------------------------------GS 182 (673)
Q Consensus 161 -----~L~~L~L~~n~l~~~~~~~l-----------------------------------------------------~~ 182 (673)
+|++|++++|.+++.+|..+ ..
T Consensus 272 ~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 351 (562)
T 3a79_B 272 FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPS 351 (562)
T ss_dssp HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSS
T ss_pred hhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccC
Confidence 55666666666665554433 67
Q ss_pred CCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCC--chhhhcccCCCeEeecCCcCCCCCcc-cccCCCccc
Q 005864 183 LSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEF--PVELEKLVQLSELDLSHNFLGGEIPP-QICNLESLE 259 (673)
Q Consensus 183 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~ls~N~l~~~~~~-~~~~l~~L~ 259 (673)
+++|++|++++|.+++..|..+..+++|+.|++++|++++.. |..+..+++|+.|++++|.+++.+|. .+..+++|+
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 431 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence 789999999999999888889999999999999999998743 46688899999999999999874554 578889999
Q ss_pred EEEecCccccccCccccccCCCccEEEccCccccCCCCCCcccccCccccccCCcC
Q 005864 260 KLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLGLIPNSTGFQYDPIQALRGNRG 315 (673)
Q Consensus 260 ~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~ 315 (673)
.|++++|++++..|..+. ++|+.|++++|+++..++............+.+|.-
T Consensus 432 ~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l 485 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQL 485 (562)
T ss_dssp EEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCC
T ss_pred EEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCC
Confidence 999999999877665543 689999999999997666666666666667777653
No 280
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.3e-33 Score=311.76 Aligned_cols=134 Identities=18% Similarity=0.175 Sum_probs=90.4
Q ss_pred CCCccccCCCcccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccc-
Q 005864 1 MNHLSGAIPPSVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGN- 79 (673)
Q Consensus 1 ~n~i~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~- 79 (673)
+|+|++..|.+|+++++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|+++++
T Consensus 35 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 114 (549)
T 2z81_A 35 FNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG 114 (549)
T ss_dssp SSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSC
T ss_pred CCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccc
Confidence 3567766677777777777777777777766667777777777777777777766666677777777777777777653
Q ss_pred cccccCCCCCccEEEccCCc-cccccccCccccCCCcEEEcccCccCccCChhhhc
Q 005864 80 ISEVFGIYPNLTFLDISHNN-FYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGK 134 (673)
Q Consensus 80 ~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 134 (673)
.+..|..+++|++|++++|. +..+.+..+.++++|++|++++|.+++..|..+..
T Consensus 115 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence 23456667777777777766 44444456666677777777777666655555443
No 281
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=8.7e-33 Score=310.81 Aligned_cols=139 Identities=27% Similarity=0.322 Sum_probs=116.0
Q ss_pred ccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCc-cCCchhhhcccCCCeEeecCCcCCCCCcccccCCCcc
Q 005864 180 LGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFR-KEFPVELEKLVQLSELDLSHNFLGGEIPPQICNLESL 258 (673)
Q Consensus 180 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L 258 (673)
+..+++++.++++.|.+.+..+..+..+++|+.|++++|.+. +..|..|..+++|+.|+|++|++++..|..|.++++|
T Consensus 441 ~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L 520 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 520 (635)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred cccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCC
Confidence 344455566666666666666667777888899999988754 4567889999999999999999998889999999999
Q ss_pred cEEEecCccccccCccccccCCCccEEEccCccccCCCCCCccc--ccCccccccCCcCCCC
Q 005864 259 EKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLGLIPNSTGF--QYDPIQALRGNRGLCG 318 (673)
Q Consensus 259 ~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~--~~~~~~~~~~n~~~c~ 318 (673)
++|+|++|+|++..+..|..+++|+.|+|++|++++.+|..... .......+.+||+.|+
T Consensus 521 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 99999999999999999999999999999999999999875542 3466778999999995
No 282
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.2e-33 Score=293.45 Aligned_cols=301 Identities=22% Similarity=0.182 Sum_probs=259.9
Q ss_pred CCCccccCCCcccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCccccccc
Q 005864 1 MNHLSGAIPPSVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNI 80 (673)
Q Consensus 1 ~n~i~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~ 80 (673)
.|+|++..|..|+++++|++|+|++|.+++..|..|+++++|++|+|++|+++...+..|..+++|++|+|++|+++++.
T Consensus 78 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 157 (390)
T 3o6n_A 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157 (390)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence 37888888889999999999999999999988999999999999999999999665666899999999999999999999
Q ss_pred ccccCCCCCccEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccccCCccccCCC
Q 005864 81 SEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLK 160 (673)
Q Consensus 81 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~ 160 (673)
+..|..+++|++|++++|.+++. .+..+++|+.|++++|.++.. ...++|++|++++|.+... +.. ..+
T Consensus 158 ~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~ 226 (390)
T 3o6n_A 158 DDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RGP--VNV 226 (390)
T ss_dssp TTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCS
T ss_pred hhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeec-ccc--ccc
Confidence 99999999999999999999865 467789999999999998853 3446899999999999854 332 347
Q ss_pred CCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeec
Q 005864 161 SLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLS 240 (673)
Q Consensus 161 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls 240 (673)
+|+.|++++|.+++. ..+..+++|+.|++++|.+++..|..|..+++|+.|++++|++++ .+..+..+++|+.|+++
T Consensus 227 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 227 ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLS 303 (390)
T ss_dssp SCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECC
T ss_pred cccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECC
Confidence 999999999999954 578999999999999999998889999999999999999999986 45666788999999999
Q ss_pred CCcCCCCCcccccCCCcccEEEecCccccccCccccccCCCccEEEccCccccCCCCCCcccccCccccccCCcCCCCCC
Q 005864 241 HNFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLGLIPNSTGFQYDPIQALRGNRGLCGDV 320 (673)
Q Consensus 241 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~~~ 320 (673)
+|++. .+|..+..+++|+.|++++|++++.. +..+++|+.|++++|++.+..... .+.......+.+++..|+.+
T Consensus 304 ~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~~~-~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 304 HNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRA-LFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp SSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHH-HTTTCCTTTBCCCCSCCCTT
T ss_pred CCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchhHHH-HHHHHHhhcccccCceeccc
Confidence 99998 67778899999999999999998763 678899999999999998754321 12233344566777777654
No 283
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.4e-33 Score=313.18 Aligned_cols=291 Identities=25% Similarity=0.298 Sum_probs=138.0
Q ss_pred CCccccCCCcccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccc
Q 005864 2 NHLSGAIPPSVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNIS 81 (673)
Q Consensus 2 n~i~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~ 81 (673)
|+|++..+..|+++++|++|+|++|.+++..|..|+++++|++|+|++|.++...+.+|.++++|++|+|++|+++++++
T Consensus 35 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~ 114 (680)
T 1ziw_A 35 NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN 114 (680)
T ss_dssp SCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCS
T ss_pred CCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccCh
Confidence 34444444445555555555555555554444445555555555555555543333345555555555555555554444
Q ss_pred cccCCCCCccEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhh--ccccccccccccccccccCCccccCC
Q 005864 82 EVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIG--KLYQLHKLDFSLNQIVGEIPIELGNL 159 (673)
Q Consensus 82 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~n~i~~~~~~~l~~l 159 (673)
..|..+++|++|+|++|.+++..+..+.++++|++|++++|.+++..+..+. .+++|++|++++|.+++..+..+..+
T Consensus 115 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 194 (680)
T 1ziw_A 115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI 194 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGS
T ss_pred hHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhh
Confidence 4455555555555555555444444444555555555555555444433332 22445555555555544444333322
Q ss_pred ---------------------------CCCCEEEccCccccccCCccccCCCC--CCEEEeCCCCCCCcCCccccccccc
Q 005864 160 ---------------------------KSLNYLVLNGNKLSGNLPRVLGSLSE--LEYLDLSTNKLSGSIPETLGNLLKV 210 (673)
Q Consensus 160 ---------------------------~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~l~~n~l~~~~~~~l~~l~~L 210 (673)
++|+.|++++|.+++..+..|..++. |+.|++++|.+++..|..|..+++|
T Consensus 195 ~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 274 (680)
T 1ziw_A 195 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQL 274 (680)
T ss_dssp SEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccc
Confidence 23344444444444444444443322 5555555554444444444444455
Q ss_pred cEEEccCCcCccCCchhhhcccCCCeEeecCCcCCC-----CCcc----cccCCCcccEEEecCccccccCccccccCCC
Q 005864 211 HYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGG-----EIPP----QICNLESLEKLNVSHNNLSGLIPSCFEGMHG 281 (673)
Q Consensus 211 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~-----~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 281 (673)
+.|++++|++++..|..|..+++|+.|++++|...+ .+|. .|..+++|++|++++|.+++..+..|..+++
T Consensus 275 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 354 (680)
T 1ziw_A 275 EYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN 354 (680)
T ss_dssp CEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTT
T ss_pred cEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccC
Confidence 555555555444444444444444444444443321 1111 3444555555555555555555555555555
Q ss_pred ccEEEccCccc
Q 005864 282 LSCIDISYNEL 292 (673)
Q Consensus 282 L~~l~l~~N~l 292 (673)
|++|++++|.+
T Consensus 355 L~~L~Ls~n~~ 365 (680)
T 1ziw_A 355 LKYLSLSNSFT 365 (680)
T ss_dssp CCEEECTTCBS
T ss_pred CcEEECCCCch
Confidence 55555555543
No 284
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.2e-33 Score=309.52 Aligned_cols=302 Identities=22% Similarity=0.184 Sum_probs=264.0
Q ss_pred CCCccccCCCcccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCccccccc
Q 005864 1 MNHLSGAIPPSVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNI 80 (673)
Q Consensus 1 ~n~i~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~ 80 (673)
.|+|++..|..|+++++|++|+|++|.+++..|..|+++++|++|+|++|.++...+..|.++++|++|+|++|.+++++
T Consensus 84 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~ 163 (597)
T 3oja_B 84 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 163 (597)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCC
Confidence 47899988999999999999999999999999999999999999999999999776777899999999999999999999
Q ss_pred ccccCCCCCccEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccccCCccccCCC
Q 005864 81 SEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLK 160 (673)
Q Consensus 81 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~ 160 (673)
+..|..+++|++|+|++|.+++. .+..+++|+.|++++|.+++. ...++|+.|++++|.+....+ .+ .+
T Consensus 164 ~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~~~~-~~--~~ 232 (597)
T 3oja_B 164 DDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRG-PV--NV 232 (597)
T ss_dssp TTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCCCEEEC-SC--CS
T ss_pred hhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccccc-----cCCchhheeeccCCccccccc-cc--CC
Confidence 99999999999999999999865 366789999999999998853 445689999999999985433 22 37
Q ss_pred CCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeec
Q 005864 161 SLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLS 240 (673)
Q Consensus 161 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls 240 (673)
+|+.|+|++|.+++ +..+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|.+++ +|..+..+++|+.|+|+
T Consensus 233 ~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls 309 (597)
T 3oja_B 233 ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLS 309 (597)
T ss_dssp CCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECC
T ss_pred CCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECC
Confidence 99999999999995 3678999999999999999998889999999999999999999997 46677789999999999
Q ss_pred CCcCCCCCcccccCCCcccEEEecCccccccCccccccCCCccEEEccCccccCCCCCCcccccCccccccCCcCCCCCC
Q 005864 241 HNFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLGLIPNSTGFQYDPIQALRGNRGLCGDV 320 (673)
Q Consensus 241 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~~~ 320 (673)
+|.+. .+|..+..+++|+.|+|++|.+++.. +..+++|+.|++++|++.+..... .+.......+.++...|+.+
T Consensus 310 ~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~~-~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 310 HNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRA-LFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp SSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHH-HTTTCCTTTBCCCCCCCCTT
T ss_pred CCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHHH-HHHHHhhhccccccccCCcc
Confidence 99999 78888999999999999999998763 677899999999999998764332 22333445677888889875
Q ss_pred C
Q 005864 321 E 321 (673)
Q Consensus 321 ~ 321 (673)
.
T Consensus 385 ~ 385 (597)
T 3oja_B 385 Y 385 (597)
T ss_dssp C
T ss_pred h
Confidence 3
No 285
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=2.4e-32 Score=281.00 Aligned_cols=279 Identities=22% Similarity=0.249 Sum_probs=215.0
Q ss_pred CCccccCCCcccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccc
Q 005864 2 NHLSGAIPPSVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNIS 81 (673)
Q Consensus 2 n~i~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~ 81 (673)
|.++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|++++..|.+|..+++|++|+|++|+++.++.
T Consensus 43 ~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 119 (332)
T 2ft3_A 43 LGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP 119 (332)
T ss_dssp SCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCS
T ss_pred CCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCc
Confidence 3444 5666664 678888888888887777788888888888888888887777888888888888888888886665
Q ss_pred cccCCCCCccEEEccCCccccccccCccccCCCcEEEcccCccCc--cCChhhhccccccccccccccccccCCccccCC
Q 005864 82 EVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITG--SIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNL 159 (673)
Q Consensus 82 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l 159 (673)
..+ ++|++|++++|.++...+..+.++++|+.|++++|.++. ..+..+..+ +|+.|++++|++++ +|..+.
T Consensus 120 ~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~-- 192 (332)
T 2ft3_A 120 NLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP-- 192 (332)
T ss_dssp SCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--
T ss_pred ccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--
Confidence 544 678888888888887777778888888888888888853 566677777 88888888888874 555443
Q ss_pred CCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEee
Q 005864 160 KSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDL 239 (673)
Q Consensus 160 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 239 (673)
++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|+.|++
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l 271 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYL 271 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEEC
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEEC
Confidence 68888888888888777777888888888888888888777777888888888888888887 46667888888888888
Q ss_pred cCCcCCCCCcccccC------CCcccEEEecCcccc--ccCccccccCCCccEEEccCcc
Q 005864 240 SHNFLGGEIPPQICN------LESLEKLNVSHNNLS--GLIPSCFEGMHGLSCIDISYNE 291 (673)
Q Consensus 240 s~N~l~~~~~~~~~~------l~~L~~L~l~~N~l~--~~~~~~~~~~~~L~~l~l~~N~ 291 (673)
++|++++..+..|.. ..+|+.|++++|++. +..|..|..+++|+.+++++|+
T Consensus 272 ~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 272 HTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 888888666666654 356888888888877 5677778888888888888774
No 286
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=5.7e-32 Score=278.02 Aligned_cols=279 Identities=22% Similarity=0.248 Sum_probs=231.9
Q ss_pred CccccCCCcccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCccccccccc
Q 005864 3 HLSGAIPPSVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISE 82 (673)
Q Consensus 3 ~i~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~ 82 (673)
.++ .+|..+. +.++.|+|++|.+++..+..|+++++|++|+|++|++++..|..|.++++|++|+|++|+++.++..
T Consensus 42 ~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~ 118 (330)
T 1xku_A 42 GLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK 118 (330)
T ss_dssp CCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS
T ss_pred Ccc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChh
Confidence 344 5666664 6889999999999988777899999999999999999887788899999999999999999876655
Q ss_pred ccCCCCCccEEEccCCccccccccCccccCCCcEEEcccCccCc--cCChhhhccccccccccccccccccCCccccCCC
Q 005864 83 VFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITG--SIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLK 160 (673)
Q Consensus 83 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~ 160 (673)
.+ ++|++|++++|.+++..+..+.++++|+.|++++|.++. ..+..+..+++|++|++++|.++ .+|..+. +
T Consensus 119 ~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~ 192 (330)
T 1xku_A 119 MP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--P 192 (330)
T ss_dssp CC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--T
T ss_pred hc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--c
Confidence 44 789999999999988888888899999999999998864 66778888999999999999987 4555544 7
Q ss_pred CCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeec
Q 005864 161 SLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLS 240 (673)
Q Consensus 161 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls 240 (673)
+|++|++++|++++..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|+.|+++
T Consensus 193 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECC
T ss_pred cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECC
Confidence 8999999999999888888999999999999999998777778888999999999999998 567788888999999999
Q ss_pred CCcCCCCCcccccC------CCcccEEEecCccccc--cCccccccCCCccEEEccCcc
Q 005864 241 HNFLGGEIPPQICN------LESLEKLNVSHNNLSG--LIPSCFEGMHGLSCIDISYNE 291 (673)
Q Consensus 241 ~N~l~~~~~~~~~~------l~~L~~L~l~~N~l~~--~~~~~~~~~~~L~~l~l~~N~ 291 (673)
+|++++..+..|.. ...|+.|++++|++.. ..|..|..++.++.+++++|+
T Consensus 272 ~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 272 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 99998776666654 3778899999998864 567788889999999998884
No 287
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.9e-32 Score=280.14 Aligned_cols=290 Identities=23% Similarity=0.374 Sum_probs=223.9
Q ss_pred CCccccCCCcccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccc
Q 005864 2 NHLSGAIPPSVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNIS 81 (673)
Q Consensus 2 n~i~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~ 81 (673)
|.++. +| .+..+++|++|+|++|.+++..+ +..+++|++|++++|.++.. .++..+++|++|++++|.+....+
T Consensus 54 ~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~~ 127 (347)
T 4fmz_A 54 EKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP 127 (347)
T ss_dssp SCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCGG
T ss_pred Ccccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCchh
Confidence 34443 33 47788888888888888885433 88888888888888888743 358888888888888888886654
Q ss_pred cccCCCCCccEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccccCCccccCCCC
Q 005864 82 EVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKS 161 (673)
Q Consensus 82 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~ 161 (673)
+..+++|++|++++|..... ...+..+++|+.|++++|.+....+ +..+++|++|++++|.+.+..+ +..+++
T Consensus 128 --~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~ 200 (347)
T 4fmz_A 128 --LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTS 200 (347)
T ss_dssp --GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTT
T ss_pred --hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCc
Confidence 77888888888888855432 3347788888888888888875433 7788888888888888874332 778888
Q ss_pred CCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecC
Q 005864 162 LNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSH 241 (673)
Q Consensus 162 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~ 241 (673)
|+.|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++. ..+..+++|+.|++++
T Consensus 201 L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~ 274 (347)
T 4fmz_A 201 LHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGS 274 (347)
T ss_dssp CCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCS
T ss_pred cceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccC
Confidence 8888888888885443 7788899999999999885433 88888999999999988864 4678888999999999
Q ss_pred CcCCCCCcccccCCCcccEEEecCccccccCccccccCCCccEEEccCccccCCCCCCcccccCccccccCC
Q 005864 242 NFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLGLIPNSTGFQYDPIQALRGN 313 (673)
Q Consensus 242 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n 313 (673)
|.+++. ..+..+++|+.|++++|++++..+..+..+++|++|++++|++++.+| ...+.......+.+|
T Consensus 275 n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 275 NQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQ 343 (347)
T ss_dssp SCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC
T ss_pred CccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhh
Confidence 998854 457888999999999999988888888899999999999999888776 334444444455554
No 288
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.9e-32 Score=302.29 Aligned_cols=309 Identities=21% Similarity=0.244 Sum_probs=233.6
Q ss_pred CCccccCCCcccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccc
Q 005864 2 NHLSGAIPPSVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNIS 81 (673)
Q Consensus 2 n~i~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~ 81 (673)
|.++ .+|+.+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..|.+|.++++|++|+|++|++++.++
T Consensus 15 ~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 91 (549)
T 2z81_A 15 RSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS 91 (549)
T ss_dssp SCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred Cccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH
Confidence 4566 6787775 799999999999999889999999999999999999998888999999999999999999999999
Q ss_pred cccCCCCCccEEEccCCccccc-cccCccccCCCcEEEcccCc-cCccCChhhhccccccccccccccccccCCccccCC
Q 005864 82 EVFGIYPNLTFLDISHNNFYGE-IWSSWGKCQQLGTLNFSMNN-ITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNL 159 (673)
Q Consensus 82 ~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l 159 (673)
..|..+++|++|+|++|.+++. .+..++++++|++|++++|. +....+..+.++++|++|++++|.+++..|..+..+
T Consensus 92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 171 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171 (549)
T ss_dssp HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence 8999999999999999999864 35789999999999999998 554455789999999999999999998888888877
Q ss_pred CCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcC--Ccc----------------------------------
Q 005864 160 KSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSI--PET---------------------------------- 203 (673)
Q Consensus 160 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~---------------------------------- 203 (673)
++|++|++++|.+.......+..+++|++|++++|.+++.. +..
T Consensus 172 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~ 251 (549)
T 2z81_A 172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL 251 (549)
T ss_dssp SEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCT
T ss_pred ccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhc
Confidence 77777777766665322222344566666666666655421 000
Q ss_pred ------------------------------------------------------ccccccccEEEccCCcCccCCchhh-
Q 005864 204 ------------------------------------------------------LGNLLKVHYLNLSNNQFRKEFPVEL- 228 (673)
Q Consensus 204 ------------------------------------------------------l~~l~~L~~L~l~~n~l~~~~~~~~- 228 (673)
+...++|+.|++++|.++. +|..+
T Consensus 252 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-ip~~~~ 330 (549)
T 2z81_A 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFS 330 (549)
T ss_dssp TCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-CCHHHH
T ss_pred cccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcccc-CCHHHH
Confidence 0112346666666666653 44443
Q ss_pred hcccCCCeEeecCCcCCCCCcc---cccCCCcccEEEecCccccccCc--cccccCCCccEEEccCccccCCCCCCcccc
Q 005864 229 EKLVQLSELDLSHNFLGGEIPP---QICNLESLEKLNVSHNNLSGLIP--SCFEGMHGLSCIDISYNELLGLIPNSTGFQ 303 (673)
Q Consensus 229 ~~l~~L~~L~ls~N~l~~~~~~---~~~~l~~L~~L~l~~N~l~~~~~--~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~ 303 (673)
..+++|+.|++++|.+.+.+|. .++.+++|+.|++++|++++..+ ..+..+++|++|++++|+++..++......
T Consensus 331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~ 410 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPE 410 (549)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCT
T ss_pred hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccc
Confidence 5678888888888888765543 36677888888888888876643 457778888888888888875444333333
Q ss_pred cCccccccCCc
Q 005864 304 YDPIQALRGNR 314 (673)
Q Consensus 304 ~~~~~~~~~n~ 314 (673)
......+.+|.
T Consensus 411 ~L~~L~Ls~N~ 421 (549)
T 2z81_A 411 KMRFLNLSSTG 421 (549)
T ss_dssp TCCEEECTTSC
T ss_pred cccEEECCCCC
Confidence 34444455543
No 289
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.1e-31 Score=276.01 Aligned_cols=271 Identities=26% Similarity=0.423 Sum_probs=236.4
Q ss_pred CCccccCCCcccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccc
Q 005864 2 NHLSGAIPPSVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNIS 81 (673)
Q Consensus 2 n~i~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~ 81 (673)
|+|++. |. +.++++|++|+|++|.+++. ..|.++++|++|++++|.+.+..+ +..+++|++|++++|......
T Consensus 76 n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~- 148 (347)
T 4fmz_A 76 NQITDI-SP-LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL- 148 (347)
T ss_dssp SCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-
T ss_pred Cccccc-hh-hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccc-
Confidence 677754 33 99999999999999999953 469999999999999999985433 899999999999999655443
Q ss_pred cccCCCCCccEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccccCCccccCCCC
Q 005864 82 EVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKS 161 (673)
Q Consensus 82 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~ 161 (673)
..+..+++|++|++++|.+....+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++
T Consensus 149 ~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~ 222 (347)
T 4fmz_A 149 SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTR 222 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTT
T ss_pred cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCc
Confidence 348999999999999999986554 8899999999999999995433 8899999999999999985443 888999
Q ss_pred CCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecC
Q 005864 162 LNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSH 241 (673)
Q Consensus 162 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~ 241 (673)
|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|+.|++++|++++. ..+..+++|+.|++++
T Consensus 223 L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~ 296 (347)
T 4fmz_A 223 LNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNN 296 (347)
T ss_dssp CCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred CCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcC
Confidence 9999999999995543 88999999999999999853 5688999999999999999975 4688999999999999
Q ss_pred CcCCCCCcccccCCCcccEEEecCccccccCccccccCCCccEEEccCcccc
Q 005864 242 NFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELL 293 (673)
Q Consensus 242 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~ 293 (673)
|.+++..+..+..+++|+.|++++|++++..| +..+++|++|++++|+++
T Consensus 297 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 297 NQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 99998888999999999999999999998876 889999999999999986
No 290
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.98 E-value=1.9e-31 Score=287.52 Aligned_cols=264 Identities=32% Similarity=0.419 Sum_probs=146.7
Q ss_pred cccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCc
Q 005864 11 SVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNL 90 (673)
Q Consensus 11 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 90 (673)
.+..+++|++|+|++|.+++..+ +.++++|++|++++|.+.+..+ +.++++|++|+|++|.++++.+ +..+++|
T Consensus 63 ~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 136 (466)
T 1o6v_A 63 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNL 136 (466)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCC
Confidence 36667777777777777764433 6677777777777777664433 6667777777777776665543 6666666
Q ss_pred cEEEccCCccccccc-------------------cCccccCCCcEEEcccCccCccCChhhhcccccccccccccccccc
Q 005864 91 TFLDISHNNFYGEIW-------------------SSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGE 151 (673)
Q Consensus 91 ~~L~L~~n~i~~~~~-------------------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 151 (673)
++|++++|.+.+... ..+.++++|+.|++++|.++.. ..+..+++|++|++++|.+.+.
T Consensus 137 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~ 214 (466)
T 1o6v_A 137 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDI 214 (466)
T ss_dssp SEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred CEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccc
Confidence 666666666554221 1244556666666666666633 3456666666666666666543
Q ss_pred CCccccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcc
Q 005864 152 IPIELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKL 231 (673)
Q Consensus 152 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 231 (673)
.+ +..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+
T Consensus 215 ~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l 286 (466)
T 1o6v_A 215 TP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 286 (466)
T ss_dssp GG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred cc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCC
Confidence 33 44455566666666555532 234555555555555555553322 4455555555555555554322 4445
Q ss_pred cCCCeEeecCCcCCCCCcccccCCCcccEEEecCccccccCccccccCCCccEEEccCccccC
Q 005864 232 VQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLG 294 (673)
Q Consensus 232 ~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~ 294 (673)
++|+.|++++|.+.+..+ +..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 287 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 287 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp TTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred CccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC
Confidence 555555555555543322 4445555555555555544433 3444455555555554444
No 291
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=1.3e-30 Score=280.83 Aligned_cols=294 Identities=28% Similarity=0.387 Sum_probs=235.6
Q ss_pred CCCccccCCCcccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCccccccc
Q 005864 1 MNHLSGAIPPSVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNI 80 (673)
Q Consensus 1 ~n~i~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~ 80 (673)
.|+|++..| +.++++|++|+|++|.+++..+ +.++++|++|++++|.+++..+ +..+++|++|++++|.+.++.
T Consensus 77 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~ 150 (466)
T 1o6v_A 77 NNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS 150 (466)
T ss_dssp SSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG
T ss_pred CCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh
Confidence 366775543 8888888888888888885544 8888888888888888875433 788888888888888877543
Q ss_pred c-------------------cccCCCCCccEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhcccccccc
Q 005864 81 S-------------------EVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKL 141 (673)
Q Consensus 81 ~-------------------~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 141 (673)
. ..+..+++|++|++++|.++.. ..+..+++|++|++++|.+++..+ ++.+++|++|
T Consensus 151 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 226 (466)
T 1o6v_A 151 ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDEL 226 (466)
T ss_dssp GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEE
T ss_pred hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEE
Confidence 2 2367788999999999998764 458889999999999999986544 7788999999
Q ss_pred ccccccccccCCccccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCc
Q 005864 142 DFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFR 221 (673)
Q Consensus 142 ~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 221 (673)
++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|+++
T Consensus 227 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~ 300 (466)
T 1o6v_A 227 SLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 300 (466)
T ss_dssp ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCS
T ss_pred ECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCccc
Confidence 9999998743 467888999999999999986544 8888999999999999985443 788899999999999998
Q ss_pred cCCchhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCccccccCccccccCCCccEEEccCccccCCCCCCcc
Q 005864 222 KEFPVELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLGLIPNSTG 301 (673)
Q Consensus 222 ~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~~~~~ 301 (673)
+..+ +..+++|+.|++++|.+++..| +..+++|+.|++++|++++. ..+..+++|+.|++++|++++.+| ...
T Consensus 301 ~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~ 373 (466)
T 1o6v_A 301 DISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LAN 373 (466)
T ss_dssp CCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTT
T ss_pred Cchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhc
Confidence 7544 7888999999999999987655 78889999999999999876 468889999999999999988877 444
Q ss_pred cccCccccccCCcCCC
Q 005864 302 FQYDPIQALRGNRGLC 317 (673)
Q Consensus 302 ~~~~~~~~~~~n~~~c 317 (673)
........+.+|++..
T Consensus 374 l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 374 LTRITQLGLNDQAWTN 389 (466)
T ss_dssp CTTCCEEECCCEEEEC
T ss_pred CCCCCEEeccCCcccC
Confidence 4555555666665543
No 292
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=7.1e-32 Score=279.99 Aligned_cols=282 Identities=18% Similarity=0.146 Sum_probs=234.1
Q ss_pred CCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEE
Q 005864 14 NFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFL 93 (673)
Q Consensus 14 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 93 (673)
.++.....++++++++ .+|..+. ++|++|++++|++++..+..|.++++|++|+|++|+++++.+..|..+++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 4456667888899998 5566554 489999999999987767789999999999999999998888889999999999
Q ss_pred EccCCccccccccCccccCCCcEEEcccCccCccCC-hhhhccccccccccccc-cccccCCccccCCCCCCEEEccCcc
Q 005864 94 DISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIP-PEIGKLYQLHKLDFSLN-QIVGEIPIELGNLKSLNYLVLNGNK 171 (673)
Q Consensus 94 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~n~ 171 (673)
+|++|++++..+..+.++++|++|++++|.++...+ ..+..+++|++|++++| .+....+..+..+++|++|++++|.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 999999987777778889999999999999985544 47888999999999998 4776667788899999999999999
Q ss_pred ccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhh---cccCCCeEeecCCcCCC--
Q 005864 172 LSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELE---KLVQLSELDLSHNFLGG-- 246 (673)
Q Consensus 172 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~ls~N~l~~-- 246 (673)
+++..+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+++..+..+. ....++.+++++|.+.+
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence 9988888899999999999999998744333455688999999999999876555443 35678889999998876
Q ss_pred --CCcccccCCCcccEEEecCccccccCccccccCCCccEEEccCccccCCCCC
Q 005864 247 --EIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLGLIPN 298 (673)
Q Consensus 247 --~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~~ 298 (673)
.+|..+..+++|+.|++++|+++.+.+..|..+++|++|++++|++.+.+|.
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred hhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 3677788999999999999999977666678999999999999999998763
No 293
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=1.2e-30 Score=293.30 Aligned_cols=299 Identities=21% Similarity=0.233 Sum_probs=249.4
Q ss_pred CCCccccCCCcccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCccccccc
Q 005864 1 MNHLSGAIPPSVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNI 80 (673)
Q Consensus 1 ~n~i~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~ 80 (673)
+|+|++..|.+|+++++|++|+|++|+|+++.+++|.++++|++|+|++|+|+...+..|.++++|++|+|++|++++++
T Consensus 61 ~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~ 140 (635)
T 4g8a_A 61 FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 140 (635)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCST
T ss_pred CCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCC
Confidence 58999888899999999999999999999888999999999999999999999877788999999999999999999999
Q ss_pred ccccCCCCCccEEEccCCccccc-cccCccccCCCcEEEcccCccCccCChhhhccc-----------------------
Q 005864 81 SEVFGIYPNLTFLDISHNNFYGE-IWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLY----------------------- 136 (673)
Q Consensus 81 ~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~----------------------- 136 (673)
+..|+++++|++|+|++|.++.. .+..++.+++|++|++++|++++..+..+..+.
T Consensus 141 ~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~ 220 (635)
T 4g8a_A 141 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 220 (635)
T ss_dssp TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT
T ss_pred hhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCccc
Confidence 89999999999999999999864 467788999999999999988765444332221
Q ss_pred --------------------------------------------------------------------------------
Q 005864 137 -------------------------------------------------------------------------------- 136 (673)
Q Consensus 137 -------------------------------------------------------------------------------- 136 (673)
T Consensus 221 ~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 300 (635)
T 4g8a_A 221 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIID 300 (635)
T ss_dssp TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTT
T ss_pred ccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhh
Confidence
Q ss_pred -----------------------------------------------------------------------ccccccccc
Q 005864 137 -----------------------------------------------------------------------QLHKLDFSL 145 (673)
Q Consensus 137 -----------------------------------------------------------------------~L~~L~l~~ 145 (673)
+|+.|++++
T Consensus 301 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~ 380 (635)
T 4g8a_A 301 LFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR 380 (635)
T ss_dssp TTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCS
T ss_pred hhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhc
Confidence 122222222
Q ss_pred cccccc--------------------------------------------------CCccccCCCCCCEEEccCcccccc
Q 005864 146 NQIVGE--------------------------------------------------IPIELGNLKSLNYLVLNGNKLSGN 175 (673)
Q Consensus 146 n~i~~~--------------------------------------------------~~~~l~~l~~L~~L~L~~n~l~~~ 175 (673)
|.+... .+..+..+++++.++++.|.+.+.
T Consensus 381 n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~ 460 (635)
T 4g8a_A 381 NGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 460 (635)
T ss_dssp SCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEEC
T ss_pred cccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccc
Confidence 221100 001123334555556666666666
Q ss_pred CCccccCCCCCCEEEeCCCCC-CCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccC
Q 005864 176 LPRVLGSLSELEYLDLSTNKL-SGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICN 254 (673)
Q Consensus 176 ~~~~l~~l~~L~~L~l~~n~l-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~ 254 (673)
.+..+..+++|+.|++++|.+ .+..|..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|+|++..+..|.+
T Consensus 461 ~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~ 540 (635)
T 4g8a_A 461 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 540 (635)
T ss_dssp CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTT
T ss_pred cccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhC
Confidence 677888899999999999985 4467889999999999999999999999999999999999999999999888889999
Q ss_pred CCcccEEEecCccccccCccccccC-CCccEEEccCccccCCCCCC
Q 005864 255 LESLEKLNVSHNNLSGLIPSCFEGM-HGLSCIDISYNELLGLIPNS 299 (673)
Q Consensus 255 l~~L~~L~l~~N~l~~~~~~~~~~~-~~L~~l~l~~N~l~~~~~~~ 299 (673)
+++|+.|+|++|+|++..|..+..+ ++|+.|+|++|+|.+.+.-.
T Consensus 541 l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~ 586 (635)
T 4g8a_A 541 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 586 (635)
T ss_dssp CTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGH
T ss_pred CCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcH
Confidence 9999999999999999999999998 68999999999999987643
No 294
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=6e-31 Score=272.96 Aligned_cols=268 Identities=21% Similarity=0.236 Sum_probs=234.6
Q ss_pred CCccccCCCcccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccc
Q 005864 2 NHLSGAIPPSVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNIS 81 (673)
Q Consensus 2 n~i~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~ 81 (673)
|+++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|++++..+.+|.++++|++|+|++|+++++++
T Consensus 41 ~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 117 (353)
T 2z80_A 41 GSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS 117 (353)
T ss_dssp TTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH
T ss_pred CCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCH
Confidence 4566 6777775 599999999999998888899999999999999999998888899999999999999999999888
Q ss_pred cccCCCCCccEEEccCCccccccc-cCccccCCCcEEEcccC-ccCccCChhhhccccccccccccccccccCCccccCC
Q 005864 82 EVFGIYPNLTFLDISHNNFYGEIW-SSWGKCQQLGTLNFSMN-NITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNL 159 (673)
Q Consensus 82 ~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l 159 (673)
..|..+++|++|+|++|+++.+.. ..+.++++|++|++++| .++...+..+..+++|++|++++|.+++..|..+..+
T Consensus 118 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 197 (353)
T 2z80_A 118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197 (353)
T ss_dssp HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred hHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcc
Confidence 889999999999999999997766 68999999999999999 5787778899999999999999999998889999999
Q ss_pred CCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCcccc---ccccccEEEccCCcCcc----CCchhhhccc
Q 005864 160 KSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLG---NLLKVHYLNLSNNQFRK----EFPVELEKLV 232 (673)
Q Consensus 160 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~L~l~~n~l~~----~~~~~~~~l~ 232 (673)
++|++|++++|.++......+..+++|+.|++++|.+++..+..+. ....++.++++++.+++ .+|..+..++
T Consensus 198 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~ 277 (353)
T 2z80_A 198 QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS 277 (353)
T ss_dssp SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCT
T ss_pred ccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhccc
Confidence 9999999999999855444556789999999999999876555443 35678889999998876 3577788999
Q ss_pred CCCeEeecCCcCCCCCccc-ccCCCcccEEEecCccccccCc
Q 005864 233 QLSELDLSHNFLGGEIPPQ-ICNLESLEKLNVSHNNLSGLIP 273 (673)
Q Consensus 233 ~L~~L~ls~N~l~~~~~~~-~~~l~~L~~L~l~~N~l~~~~~ 273 (673)
+|+.|++++|+++ .+|.. |..+++|++|++++|++.+..|
T Consensus 278 ~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 278 GLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 9999999999999 55555 6899999999999999987644
No 295
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.3e-30 Score=264.98 Aligned_cols=250 Identities=25% Similarity=0.266 Sum_probs=138.1
Q ss_pred CEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCccccccc--ccccCCCCCccEEEcc
Q 005864 19 KGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNI--SEVFGIYPNLTFLDIS 96 (673)
Q Consensus 19 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~ 96 (673)
+.++++++.++ .+|..+. ++|++|+|++|+++...+..|.++++|++|+|++|+++... +..+..+++|++|+|+
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 46677777776 4444433 46777777777776444445667777777777777766332 3445556667777777
Q ss_pred CCccccccccCccccCCCcEEEcccCccCccCC-hhhhccccccccccccccccccCCccccCCCCCCEEEccCccccc-
Q 005864 97 HNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIP-PEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSG- 174 (673)
Q Consensus 97 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~- 174 (673)
+|.+... +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 87 ~n~i~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEEEE-EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccccC-hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 7666532 3345566666666666666654333 345555555555555555554444445555555555555555543
Q ss_pred cCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccC
Q 005864 175 NLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICN 254 (673)
Q Consensus 175 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~ 254 (673)
..|..+..+++|+.|++++|.+ ++..|..+..+++|+.|++++|.+++..+..+..
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l------------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 221 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQL------------------------EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCC------------------------CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT
T ss_pred cchhHHhhCcCCCEEECCCCCc------------------------CCcCHHHhcCCCCCCEEECCCCccCccChhhccC
Confidence 3444444444555555555544 4444444444445555555555554444444455
Q ss_pred CCcccEEEecCccccccCccccccCC-CccEEEccCccccCCC
Q 005864 255 LESLEKLNVSHNNLSGLIPSCFEGMH-GLSCIDISYNELLGLI 296 (673)
Q Consensus 255 l~~L~~L~l~~N~l~~~~~~~~~~~~-~L~~l~l~~N~l~~~~ 296 (673)
+++|+.|++++|++++..+..+..++ +|+.|++++|++.+..
T Consensus 222 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 55555555555555555555555553 5555555555555543
No 296
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=1.1e-29 Score=271.40 Aligned_cols=215 Identities=23% Similarity=0.257 Sum_probs=108.3
Q ss_pred cCCCcccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCC
Q 005864 7 AIPPSVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGI 86 (673)
Q Consensus 7 ~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~ 86 (673)
..+.+++++++|++|+|++|.+++. | .|..+++|++|+|++|++++. + +..+++|++|+|++|+++++. +..
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~---~~~ 104 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLD---VTP 104 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC---CTT
T ss_pred ccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceee---cCC
Confidence 3344555555566666666555543 3 455555566666665555532 2 555555555555555555442 555
Q ss_pred CCCccEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccccCCccccCCCCCCEEE
Q 005864 87 YPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLV 166 (673)
Q Consensus 87 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 166 (673)
+++|++|++++|+++++ .++.+++|++|++++|++++. .++.+++|++|++++|+..+.+ .+..+++|+.|+
T Consensus 105 l~~L~~L~L~~N~l~~l---~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 176 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKL---DVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLD 176 (457)
T ss_dssp CTTCCEEECCSSCCSCC---CCTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEE
T ss_pred CCcCCEEECCCCcCCee---cCCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEE
Confidence 55555555555555543 145555555555555555542 1444555555555555322222 244445555555
Q ss_pred ccCccccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCC
Q 005864 167 LNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGG 246 (673)
Q Consensus 167 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 246 (673)
+++|++++ ++ +..+++|+.|++++|.+++. .+..+++|+.|++++|++++ +| +..+++|+.|++++|.+++
T Consensus 177 ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 177 CSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred CCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 55555553 22 44444555555555555432 24444455555555555544 22 4444445555555555443
No 297
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.8e-30 Score=263.83 Aligned_cols=229 Identities=24% Similarity=0.277 Sum_probs=178.7
Q ss_pred CccEEEccCCccccccccCccccCCCcEEEcccCccCcc--CChhhhccccccccccccccccccCCccccCCCCCCEEE
Q 005864 89 NLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGS--IPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLV 166 (673)
Q Consensus 89 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 166 (673)
+|++|+|++|.++.+....|.++++|++|+|++|.++.. .+..+..+++|++|++++|.+. .++..+..+++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEE
Confidence 455555555555544444455555555555555555422 2455566777777777777776 4555677788888888
Q ss_pred ccCccccccCC-ccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCcc-CCchhhhcccCCCeEeecCCcC
Q 005864 167 LNGNKLSGNLP-RVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRK-EFPVELEKLVQLSELDLSHNFL 244 (673)
Q Consensus 167 L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~ls~N~l 244 (673)
+++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++ ..|..+..+++|+.|++++|.+
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence 88888886554 578888899999999999887788888889999999999999986 5788899999999999999999
Q ss_pred CCCCcccccCCCcccEEEecCccccccCccccccCCCccEEEccCccccCCCCCCccc--ccCccccccCCcCCCC
Q 005864 245 GGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLGLIPNSTGF--QYDPIQALRGNRGLCG 318 (673)
Q Consensus 245 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~--~~~~~~~~~~n~~~c~ 318 (673)
++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++++..|..... .......+.+|+..|+
T Consensus 188 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 9888889999999999999999999998888999999999999999999988764432 2556778899988775
No 298
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=7.9e-30 Score=272.70 Aligned_cols=253 Identities=24% Similarity=0.260 Sum_probs=201.7
Q ss_pred CCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEEccCCccccccccCccccCCCcEEEcc
Q 005864 41 QLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFS 120 (673)
Q Consensus 41 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 120 (673)
+...++.+++.++ .+|..+. ++++.|+|++|+|+.+.+..|..+++|++|+|++|.++.+.+..|.++++|++|+|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4567777777776 5555443 577778888888877777777788888888888888777777777778888888888
Q ss_pred cCccCccCChhhhccccccccccccccccccCCccccCCCCCCEEEccC-ccccccCCccccCCCCCCEEEeCCCCCCCc
Q 005864 121 MNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNG-NKLSGNLPRVLGSLSELEYLDLSTNKLSGS 199 (673)
Q Consensus 121 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 199 (673)
+|+++...+..|..+++|++|+|++|+++...+..|..+++|++|+|++ |.+....+..|..+++|+.|++++|.++ .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 8888766666777888888888888888766666778888888888887 4455445557888888888888888887 4
Q ss_pred CCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCccccccCccccccC
Q 005864 200 IPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGM 279 (673)
Q Consensus 200 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~ 279 (673)
+| .+..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+++..+..|.++++|+.|+|++|++++..+..|..+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 55 47788888999999998888888888888899999999999988778888889999999999999998888888889
Q ss_pred CCccEEEccCccccCCCCC
Q 005864 280 HGLSCIDISYNELLGLIPN 298 (673)
Q Consensus 280 ~~L~~l~l~~N~l~~~~~~ 298 (673)
++|+.|+|++|++.+...-
T Consensus 279 ~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 279 HHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp TTCCEEECCSSCEECSSTT
T ss_pred cCCCEEEcCCCCccCCCCc
Confidence 9999999999998876643
No 299
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=1e-29 Score=272.79 Aligned_cols=253 Identities=22% Similarity=0.221 Sum_probs=206.6
Q ss_pred CCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEEccCCccccccccCccccCCCcEEEcc
Q 005864 41 QLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFS 120 (673)
Q Consensus 41 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 120 (673)
+...++.+++.++ .+|..+. ++|+.|+|++|+|+++.+..|..+++|++|+|++|.++++.+..|.++++|++|+|+
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 4567777777776 4555443 578888888888887777788888888888888888887777788888888888888
Q ss_pred cCccCccCChhhhccccccccccccccccccCCccccCCCCCCEEEccC-ccccccCCccccCCCCCCEEEeCCCCCCCc
Q 005864 121 MNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNG-NKLSGNLPRVLGSLSELEYLDLSTNKLSGS 199 (673)
Q Consensus 121 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 199 (673)
+|.++...+..|..+++|++|+|++|+++...+..|..+++|+.|++++ |.+....+..|..+++|+.|++++|.+++
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD- 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-
Confidence 8888876667788888888888888888866667788888888888888 45554555578888889999999998884
Q ss_pred CCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCccccccCccccccC
Q 005864 200 IPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGM 279 (673)
Q Consensus 200 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~ 279 (673)
+| .+..+++|+.|+|++|++++..|..|..+++|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..|..+
T Consensus 211 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 211 MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 44 47788899999999999998888889999999999999999988888888999999999999999998888888899
Q ss_pred CCccEEEccCccccCCCCC
Q 005864 280 HGLSCIDISYNELLGLIPN 298 (673)
Q Consensus 280 ~~L~~l~l~~N~l~~~~~~ 298 (673)
++|+.|+|++|++.+...-
T Consensus 290 ~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 290 RYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp TTCCEEECCSSCEECSTTT
T ss_pred cCCCEEEccCCCcCCCCCc
Confidence 9999999999999887653
No 300
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=9.5e-33 Score=297.89 Aligned_cols=234 Identities=20% Similarity=0.206 Sum_probs=152.0
Q ss_pred CCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEEccCCccccccccCccccCCCcEEEcc
Q 005864 41 QLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFS 120 (673)
Q Consensus 41 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 120 (673)
+|++|+|++|.+++..|..|..+++|++|+|++|.+++..+ |..+++|++|+|++|.+++.. ..++|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 66666666666666556666666666666666666665443 666666777777776665433 22566666666
Q ss_pred cCccCccCChhhhccccccccccccccccccCCccccCCCCCCEEEccCccccccCCcccc-CCCCCCEEEeCCCCCCCc
Q 005864 121 MNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLG-SLSELEYLDLSTNKLSGS 199 (673)
Q Consensus 121 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~ 199 (673)
+|.+++..+. .+++|+.|+|++|.+++..|..+..+++|+.|+|++|.+++..|..+. .+++|+.|+|++|.+++.
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 6666654332 245666666666666666566666666777777777777665565554 567777777777777644
Q ss_pred CCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCcccc-ccCcccccc
Q 005864 200 IPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLS-GLIPSCFEG 278 (673)
Q Consensus 200 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~ 278 (673)
. .+..+++|+.|+|++|.+++..+ .+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.+. +..|..+..
T Consensus 185 ~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 185 K--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp E--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred c--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 2 23346677777777777776444 3667777777777777777 45666777777777777777776 455566666
Q ss_pred CCCccEEEcc
Q 005864 279 MHGLSCIDIS 288 (673)
Q Consensus 279 ~~~L~~l~l~ 288 (673)
++.|+.++++
T Consensus 261 l~~L~~l~~~ 270 (487)
T 3oja_A 261 NQRVQTVAKQ 270 (487)
T ss_dssp CHHHHHHHHH
T ss_pred CCCCcEEecc
Confidence 6666666654
No 301
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=1.7e-29 Score=270.11 Aligned_cols=250 Identities=23% Similarity=0.266 Sum_probs=226.0
Q ss_pred CCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEEc
Q 005864 16 TNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDI 95 (673)
Q Consensus 16 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 95 (673)
.....++.+++.++ .+|..+. ++++.|+|++|+|+...+..|.++++|++|+|++|+|+.+.+..|..+++|++|+|
T Consensus 43 ~~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 43 NQFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TTSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 35678999999999 6676665 68999999999999888899999999999999999999999999999999999999
Q ss_pred cCCccccccccCccccCCCcEEEcccCccCccCChhhhcccccccccccc-ccccccCCccccCCCCCCEEEccCccccc
Q 005864 96 SHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSL-NQIVGEIPIELGNLKSLNYLVLNGNKLSG 174 (673)
Q Consensus 96 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~L~~n~l~~ 174 (673)
++|+++.+.+..|..+++|++|+|++|.++...+..|..+++|++|++++ |.+....+..|..+++|++|+|++|.++
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~- 198 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR- 198 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-
Confidence 99999988888899999999999999999988888999999999999998 4555555667899999999999999999
Q ss_pred cCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccC
Q 005864 175 NLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICN 254 (673)
Q Consensus 175 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~ 254 (673)
.+| .+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..
T Consensus 199 ~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 199 EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence 445 4888999999999999999888999999999999999999999999999999999999999999999877788899
Q ss_pred CCcccEEEecCccccc
Q 005864 255 LESLEKLNVSHNNLSG 270 (673)
Q Consensus 255 l~~L~~L~l~~N~l~~ 270 (673)
+++|+.|+|++|++..
T Consensus 278 l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 278 LHHLERIHLHHNPWNC 293 (440)
T ss_dssp CTTCCEEECCSSCEEC
T ss_pred ccCCCEEEcCCCCccC
Confidence 9999999999999863
No 302
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=3.7e-30 Score=258.61 Aligned_cols=224 Identities=22% Similarity=0.176 Sum_probs=150.8
Q ss_pred CEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEEccCC
Q 005864 19 KGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDISHN 98 (673)
Q Consensus 19 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 98 (673)
++++.+++.++ .+|..+ .++|++|+|++|.++...+..|..+++|++|+|++|.++++.+..|..+++|++|+|++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 56777777777 345433 357777777777777666666777777777777777777776777777777777777777
Q ss_pred c-cccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccccCCccccCCCCCCEEEccCccccccCC
Q 005864 99 N-FYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLP 177 (673)
Q Consensus 99 ~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 177 (673)
. ++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++...+..+..+++|++|++++|++++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 5 666666667777777777777777776666666666677777777776665555556666666666666666665555
Q ss_pred ccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCC
Q 005864 178 RVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLG 245 (673)
Q Consensus 178 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~ 245 (673)
..|..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..+..+..+++|+.|++++|++.
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 55666666666666666666555666666666666666666666555555666666666666666655
No 303
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=1.2e-29 Score=271.03 Aligned_cols=285 Identities=24% Similarity=0.258 Sum_probs=238.2
Q ss_pred CCCccccCCCcccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCccccccc
Q 005864 1 MNHLSGAIPPSVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNI 80 (673)
Q Consensus 1 ~n~i~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~ 80 (673)
.|+|++. | .++.+++|++|+|++|.+++. + ++.+++|++|++++|++++. + +..+++|++|++++|+++++.
T Consensus 51 ~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l~ 122 (457)
T 3bz5_A 51 NSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKLD 122 (457)
T ss_dssp SSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCCC
T ss_pred CCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCeec
Confidence 3678864 5 799999999999999999965 3 89999999999999999864 3 899999999999999999863
Q ss_pred ccccCCCCCccEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccccCCccccCCC
Q 005864 81 SEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLK 160 (673)
Q Consensus 81 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~ 160 (673)
+..+++|++|++++|+++++ .++.+++|+.|++++|...+.+ .+..+++|+.|++++|++++ +| +..++
T Consensus 123 ---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~ 191 (457)
T 3bz5_A 123 ---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNK 191 (457)
T ss_dssp ---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCT
T ss_pred ---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCC
Confidence 88999999999999999875 3888999999999999655444 47889999999999999986 44 88899
Q ss_pred CCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhccc-------C
Q 005864 161 SLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLV-------Q 233 (673)
Q Consensus 161 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-------~ 233 (673)
+|+.|++++|++++. .+..+++|+.|++++|.+++ +| +..+++|+.|++++|++++..+..+..+. +
T Consensus 192 ~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~ 265 (457)
T 3bz5_A 192 LLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTD 265 (457)
T ss_dssp TCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCC
T ss_pred CCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCC
Confidence 999999999999965 38899999999999999996 56 88999999999999999987766666554 5
Q ss_pred CCeEeecCCcCCCCCcccccCCCcccEEEecCccccccCcc--------ccccCCCccEEEccCccccCCCCCCcccccC
Q 005864 234 LSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGLIPS--------CFEGMHGLSCIDISYNELLGLIPNSTGFQYD 305 (673)
Q Consensus 234 L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~--------~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~ 305 (673)
|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|. .+..+++|+.|++++|++++. + .......
T Consensus 266 L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~-l~~l~~L 341 (457)
T 3bz5_A 266 LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D-VSHNTKL 341 (457)
T ss_dssp CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C-CTTCTTC
T ss_pred CCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c-cccCCcC
Confidence 6777777777766666 57789999999999987665543 356778999999999999995 3 3344444
Q ss_pred ccccccCCc
Q 005864 306 PIQALRGNR 314 (673)
Q Consensus 306 ~~~~~~~n~ 314 (673)
....+.+|.
T Consensus 342 ~~L~l~~N~ 350 (457)
T 3bz5_A 342 KSLSCVNAH 350 (457)
T ss_dssp SEEECCSSC
T ss_pred cEEECCCCC
Confidence 455555554
No 304
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=2e-29 Score=270.62 Aligned_cols=250 Identities=22% Similarity=0.208 Sum_probs=225.3
Q ss_pred CCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEEc
Q 005864 16 TNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDI 95 (673)
Q Consensus 16 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 95 (673)
.+...++.+++.++ .+|..+. ++|++|+|++|+|++..+..|.++++|+.|+|++|+|+++.+..|..+++|++|+|
T Consensus 54 ~~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 54 NQFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 34678999999998 5676654 68999999999999888899999999999999999999999999999999999999
Q ss_pred cCCccccccccCccccCCCcEEEcccCccCccCChhhhcccccccccccc-ccccccCCccccCCCCCCEEEccCccccc
Q 005864 96 SHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSL-NQIVGEIPIELGNLKSLNYLVLNGNKLSG 174 (673)
Q Consensus 96 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~L~~n~l~~ 174 (673)
++|.++.+.+..|..+++|++|+|++|.++...+..|..+++|+.|++++ |.+....+..+..+++|++|+|++|++++
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 99999988888899999999999999999988788899999999999998 55655555678899999999999999995
Q ss_pred cCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccC
Q 005864 175 NLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICN 254 (673)
Q Consensus 175 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~ 254 (673)
. | .+..+++|+.|+|++|.+++..|..|..+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..|..
T Consensus 211 ~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 211 M-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp C-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred c-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 4 4 5888999999999999999888999999999999999999999999999999999999999999999777788899
Q ss_pred CCcccEEEecCccccc
Q 005864 255 LESLEKLNVSHNNLSG 270 (673)
Q Consensus 255 l~~L~~L~l~~N~l~~ 270 (673)
+++|+.|+|++|++..
T Consensus 289 l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 289 LRYLVELHLHHNPWNC 304 (452)
T ss_dssp CTTCCEEECCSSCEEC
T ss_pred ccCCCEEEccCCCcCC
Confidence 9999999999998864
No 305
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.1e-29 Score=255.03 Aligned_cols=229 Identities=22% Similarity=0.232 Sum_probs=126.4
Q ss_pred CEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEEccCCccccccccCccccCCCcEEEcccC
Q 005864 43 TNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMN 122 (673)
Q Consensus 43 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 122 (673)
+.++++++.++ .+|..+ .++|++|+|++|.++++.+..|..+++|++|+|++|.++++.+..|.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 55666666665 334322 345666666666666655555666666666666666665555555555555555555555
Q ss_pred c-cCccCChhhhccccccccccccccccccCCccccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCC
Q 005864 123 N-ITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIP 201 (673)
Q Consensus 123 ~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 201 (673)
. ++...+..+..+++|++|++ ++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l------------------------~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 146 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHL------------------------DRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEEC------------------------TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCccccCHHHhcCCcCCCEEEC------------------------CCCcCCEECHhHhhCCcCCCEEECCCCcccccCH
Confidence 4 44443444444444554544 4444444444444455555555555555544434
Q ss_pred ccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCccccccCccccccCCC
Q 005864 202 ETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHG 281 (673)
Q Consensus 202 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 281 (673)
..|..+++|+.|++++|++++..+..|..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..+..+..+++
T Consensus 147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 226 (285)
T 1ozn_A 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcc
Confidence 44555555555555555555444444555555555555555555555555555566666666666665555555566666
Q ss_pred ccEEEccCccccCCCCC
Q 005864 282 LSCIDISYNELLGLIPN 298 (673)
Q Consensus 282 L~~l~l~~N~l~~~~~~ 298 (673)
|+.|++++|++.+..+.
T Consensus 227 L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 227 LQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp CCEEECCSSCEECSGGG
T ss_pred cCEEeccCCCccCCCCc
Confidence 66666666666655443
No 306
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.2e-28 Score=252.07 Aligned_cols=236 Identities=23% Similarity=0.287 Sum_probs=162.6
Q ss_pred CCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEE
Q 005864 15 FTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLD 94 (673)
Q Consensus 15 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 94 (673)
.++++.|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..+..+++|++|+|++|+++. .+..|..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCC-CCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCcccc-CcHHHhcCcCCCEEE
Confidence 367777888888777 56666777777888888877777 667777777777777777777773 355677777777777
Q ss_pred ccCCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccccCCccccCCCCCCEEEccCccccc
Q 005864 95 ISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSG 174 (673)
Q Consensus 95 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~ 174 (673)
|++|++.+..+..+... ..+..+.++++|++|++++|+++ .+|..+..+++|++|+|++|.+++
T Consensus 157 L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 157 IRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp EEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred CCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc
Confidence 77766655555544320 01122344666666666666666 556666666777777777777763
Q ss_pred cCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccC
Q 005864 175 NLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICN 254 (673)
Q Consensus 175 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~ 254 (673)
+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|+|++|.+.+.+|..++.
T Consensus 221 -l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 221 -LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp -CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred -CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence 4445667777777777777776677777777777777777777777777777777777777777777777777777777
Q ss_pred CCcccEEEecCccccc
Q 005864 255 LESLEKLNVSHNNLSG 270 (673)
Q Consensus 255 l~~L~~L~l~~N~l~~ 270 (673)
+++|+.+++..|.+..
T Consensus 300 L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 300 LPANCIILVPPHLQAQ 315 (328)
T ss_dssp SCTTCEEECCGGGSCC
T ss_pred ccCceEEeCCHHHHHH
Confidence 7777777777665543
No 307
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.96 E-value=7.3e-31 Score=286.85 Aligned_cols=187 Identities=20% Similarity=0.142 Sum_probs=133.5
Q ss_pred eccCCcEEEEEEE-eCCCCEEEEEeeccchh-------hhhHHHHHHHHHHHHHhcc-CCCcccceeeeeecCCeeeEEE
Q 005864 410 IGIGGQASVYRGE-LPSGEVVAVKKFHSLLL-------SEISVQREFLNEIKALTEI-RHRNIVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 410 ig~G~~g~vy~~~-~~~~~~vavK~~~~~~~-------~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ 480 (673)
.+.|++|.+..++ .-.|+.||||.+..... ......++|.+|+++|+++ .|+||+++++++.+++..||||
T Consensus 242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVM 321 (569)
T 4azs_A 242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVM 321 (569)
T ss_dssp -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEE
T ss_pred cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEE
Confidence 5667777766653 33589999999865321 1233457799999999999 7999999999999999999999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCC
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPG 560 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~ 560 (673)
||++|++|.+++...+ +++.. +|+.||+.||+|+|++ |||||||||+|||+++++.+||+|||+|+.....
T Consensus 322 Eyv~G~~L~d~i~~~~---~l~~~---~I~~QIl~AL~ylH~~---GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~ 392 (569)
T 4azs_A 322 EKLPGRLLSDMLAAGE---EIDRE---KILGSLLRSLAALEKQ---GFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQD 392 (569)
T ss_dssp ECCCSEEHHHHHHTTC---CCCHH---HHHHHHHHHHHHHHHT---TCEESCCCGGGEEECTTSCEEECCCTTEESCC--
T ss_pred ecCCCCcHHHHHHhCC---CCCHH---HHHHHHHHHHHHHHHC---CceeccCchHhEEECCCCCEEEeecccCeeCCCC
Confidence 9999999999998764 34443 5899999999999999 9999999999999999999999999999977655
Q ss_pred CCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCC
Q 005864 561 SSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHP 606 (673)
Q Consensus 561 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p 606 (673)
........||++|+|||++.+ .+..++|+||+|++++++.++..|
T Consensus 393 ~~~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~~ 437 (569)
T 4azs_A 393 CSWPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWSN 437 (569)
T ss_dssp -CCSHHHHHHHHHHHHHHC------------------CCCCTTHHH
T ss_pred CccccCceechhhccHHHhCC-CCCCcccccccccchhhhccccch
Confidence 555566789999999999865 467789999999998887665544
No 308
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.3e-28 Score=251.94 Aligned_cols=236 Identities=19% Similarity=0.227 Sum_probs=175.9
Q ss_pred CCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEEccCCccccccccCccccCCCcEEEc
Q 005864 40 MQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNF 119 (673)
Q Consensus 40 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 119 (673)
++++.|+|++|+++ .+|..+..+++|++|+|++|.++ ..+..|..+++|++|+|++|.++ ..+..+.++++|++|+|
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 45556666666555 44545555555555555555555 33344455555555555555554 23344444455555555
Q ss_pred ccCccCccCChhhhccccccccccccccccccCCccccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCc
Q 005864 120 SMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGS 199 (673)
Q Consensus 120 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 199 (673)
++|++.+.+|..+... ..+..+..+++|++|+|++|+++ .+|..+..+++|++|++++|.++ .
T Consensus 158 ~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~ 220 (328)
T 4fcg_A 158 RACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-A 220 (328)
T ss_dssp EEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-C
T ss_pred CCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-c
Confidence 5444444444332220 11122445899999999999999 78888999999999999999999 5
Q ss_pred CCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCccccccCccccccC
Q 005864 200 IPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGM 279 (673)
Q Consensus 200 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~ 279 (673)
+|..+..+++|+.|++++|++.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|+|++|++.+.+|..+..+
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L 300 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence 77789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEccCccccCC
Q 005864 280 HGLSCIDISYNELLGL 295 (673)
Q Consensus 280 ~~L~~l~l~~N~l~~~ 295 (673)
++|+.+++..|.+...
T Consensus 301 ~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 301 PANCIILVPPHLQAQL 316 (328)
T ss_dssp CTTCEEECCGGGSCC-
T ss_pred cCceEEeCCHHHHHHH
Confidence 9999999998877654
No 309
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=1.5e-30 Score=265.37 Aligned_cols=267 Identities=19% Similarity=0.181 Sum_probs=215.0
Q ss_pred CCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEEcc
Q 005864 17 NLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDIS 96 (673)
Q Consensus 17 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 96 (673)
.++.++++.+.+.......+..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+ |..+++|++|+|+
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 35556666777765555556677789999999998887777888889999999999998886654 8888899999999
Q ss_pred CCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccccCCccccCCCCCCEEEccCccccccC
Q 005864 97 HNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNL 176 (673)
Q Consensus 97 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 176 (673)
+|.+++.. ..++|++|++++|.+++..+.. +++|++|++++|++++..+..+..+++|++|++++|.+++..
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 99887543 3478899999999888654433 577899999999998777778888899999999999998776
Q ss_pred Cccc-cCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccCC
Q 005864 177 PRVL-GSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNL 255 (673)
Q Consensus 177 ~~~l-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l 255 (673)
+..+ ..+++|++|++++|.+++. + ....+++|+.|++++|++++..+ .+..+++|+.|++++|.++ .+|..+..+
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred HHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcC
Confidence 6666 4788999999999999854 3 23358899999999999986544 5888999999999999998 678888899
Q ss_pred CcccEEEecCcccc-ccCccccccCCCccEEEccC-ccccCCCC
Q 005864 256 ESLEKLNVSHNNLS-GLIPSCFEGMHGLSCIDISY-NELLGLIP 297 (673)
Q Consensus 256 ~~L~~L~l~~N~l~-~~~~~~~~~~~~L~~l~l~~-N~l~~~~~ 297 (673)
++|+.|++++|++. +..+..+..++.|+.+++++ +.+.+..|
T Consensus 237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 99999999999998 67788888999999999984 45555544
No 310
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=4.5e-30 Score=261.22 Aligned_cols=251 Identities=18% Similarity=0.164 Sum_probs=206.6
Q ss_pred cccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccc-cccccC-------CCCCccEEEccCCcccccccc
Q 005864 35 EIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGN-ISEVFG-------IYPNLTFLDISHNNFYGEIWS 106 (673)
Q Consensus 35 ~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~-~~~~~~-------~l~~L~~L~L~~n~i~~~~~~ 106 (673)
.++..++|+.|++++|.+ .+|..+... |+.|+|++|+++.. .+..+. .+++|++|+|++|.+++..+.
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 356677889999999988 567666654 88899999988532 333333 688999999999999877777
Q ss_pred Cc--cccCCCcEEEcccCccCccCChhhhcc-----ccccccccccccccccCCccccCCCCCCEEEccCcccccc--CC
Q 005864 107 SW--GKCQQLGTLNFSMNNITGSIPPEIGKL-----YQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGN--LP 177 (673)
Q Consensus 107 ~~--~~l~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~ 177 (673)
.+ ..+++|++|+|++|++++. |..+..+ ++|++|++++|++++..+..+..+++|++|++++|++.+. .+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 65 8899999999999999976 8888887 8999999999999988788999999999999999998754 23
Q ss_pred ccc--cCCCCCCEEEeCCCCCCCc--C-CccccccccccEEEccCCcCccCCc-hhhhcccCCCeEeecCCcCCCCCccc
Q 005864 178 RVL--GSLSELEYLDLSTNKLSGS--I-PETLGNLLKVHYLNLSNNQFRKEFP-VELEKLVQLSELDLSHNFLGGEIPPQ 251 (673)
Q Consensus 178 ~~l--~~l~~L~~L~l~~n~l~~~--~-~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ls~N~l~~~~~~~ 251 (673)
..+ ..+++|++|++++|.+++. + ...+..+++|+.|++++|++++..| ..+..+++|+.|++++|.++ .+|..
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~ 271 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSS
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhh
Confidence 333 7889999999999999832 1 2344577899999999999998764 45667889999999999998 77777
Q ss_pred ccCCCcccEEEecCccccccCccccccCCCccEEEccCccccCC
Q 005864 252 ICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLGL 295 (673)
Q Consensus 252 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~ 295 (673)
+. ++|++|+|++|+|++. |. +..+++|++|++++|++++.
T Consensus 272 ~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 272 LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 76 8999999999999988 55 88999999999999999863
No 311
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=9.1e-30 Score=259.62 Aligned_cols=257 Identities=23% Similarity=0.233 Sum_probs=222.2
Q ss_pred ccccCCCcccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccc
Q 005864 4 LSGAIPPSVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEV 83 (673)
Q Consensus 4 i~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~ 83 (673)
+...++..+..+++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+ +..+++|++|+|++|+++++..
T Consensus 22 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~-- 97 (317)
T 3o53_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-- 97 (317)
T ss_dssp HHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEE--
T ss_pred hhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccC--
Confidence 343444555667899999999999998888999999999999999999986554 9999999999999999986553
Q ss_pred cCCCCCccEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccccCCcccc-CCCCC
Q 005864 84 FGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELG-NLKSL 162 (673)
Q Consensus 84 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~-~l~~L 162 (673)
.++|++|++++|.+++..+.. +++|++|++++|++++..+..+..+++|++|++++|.+++..+..+. .+++|
T Consensus 98 ---~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 171 (317)
T 3o53_A 98 ---GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (317)
T ss_dssp ---CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred ---CCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcC
Confidence 389999999999999776554 57899999999999988788899999999999999999987777664 78999
Q ss_pred CEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCC
Q 005864 163 NYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHN 242 (673)
Q Consensus 163 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N 242 (673)
++|+|++|.+++.. ....+++|+.|++++|.+++ +|..+..+++|+.|++++|++++ +|..+..+++|+.|++++|
T Consensus 172 ~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 172 EHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp CEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTC
T ss_pred CEEECCCCcCcccc--cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCC
Confidence 99999999999653 34458999999999999994 55669999999999999999995 5777899999999999999
Q ss_pred cCC-CCCcccccCCCcccEEEecCc-cccccCcc
Q 005864 243 FLG-GEIPPQICNLESLEKLNVSHN-NLSGLIPS 274 (673)
Q Consensus 243 ~l~-~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~ 274 (673)
++. +..+..+..+++|+.|++++| .+++..+.
T Consensus 248 ~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 248 GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred CccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 998 778888999999999999955 56665554
No 312
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=5.1e-30 Score=260.85 Aligned_cols=250 Identities=21% Similarity=0.254 Sum_probs=212.5
Q ss_pred ccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccc-cccCcccc-------CCCCCcEEEccCcccccccccc
Q 005864 12 VGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLF-GQIPRSLR-------NLASLNRVHLEQNHLTGNISEV 83 (673)
Q Consensus 12 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~l~-------~l~~L~~L~L~~n~i~~~~~~~ 83 (673)
+...++|+.|++++|.+ .+|..+... |+.|+|++|.+. ...|..+. ++++|++|+|++|++++..+..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 45677899999999999 577777654 999999999995 45565555 7999999999999999776665
Q ss_pred c--CCCCCccEEEccCCccccccccCcccc-----CCCcEEEcccCccCccCChhhhcccccccccccccccccc--CCc
Q 005864 84 F--GIYPNLTFLDISHNNFYGEIWSSWGKC-----QQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGE--IPI 154 (673)
Q Consensus 84 ~--~~l~~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~--~~~ 154 (673)
+ ..+++|++|+|++|.+++. +..+..+ ++|++|+|++|++++..+..|+.+++|++|++++|++.+. .+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 5 8999999999999999987 7777777 9999999999999988889999999999999999997654 233
Q ss_pred cc--cCCCCCCEEEccCccccc---cCCccccCCCCCCEEEeCCCCCCCcCC-ccccccccccEEEccCCcCccCCchhh
Q 005864 155 EL--GNLKSLNYLVLNGNKLSG---NLPRVLGSLSELEYLDLSTNKLSGSIP-ETLGNLLKVHYLNLSNNQFRKEFPVEL 228 (673)
Q Consensus 155 ~l--~~l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~ 228 (673)
.+ ..+++|++|+|++|++++ .....+..+++|+.|++++|.+++..| ..+..+++|+.|+|++|+++ .+|..+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 44 789999999999999983 222445688999999999999997664 45677899999999999999 566666
Q ss_pred hcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCcccccc
Q 005864 229 EKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGL 271 (673)
Q Consensus 229 ~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 271 (673)
. ++|+.|++++|++++. |. +..+++|++|++++|++++.
T Consensus 273 ~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 5 7999999999999965 65 89999999999999999864
No 313
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=9.4e-27 Score=248.51 Aligned_cols=259 Identities=29% Similarity=0.384 Sum_probs=157.3
Q ss_pred CCccccCCCcccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccc
Q 005864 2 NHLSGAIPPSVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNIS 81 (673)
Q Consensus 2 n~i~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~ 81 (673)
|++++ +|+.+ ++|++|++++|.+++. +.. .++|++|++++|++++ +| .|.++++|++|++++|++++++.
T Consensus 101 n~l~~-lp~~~---~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~lp~ 170 (454)
T 1jl5_A 101 NSLTE-LPELP---QSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKLPD 170 (454)
T ss_dssp SCCSS-CCCCC---TTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCCCC
T ss_pred CcCCc-ccccc---CCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcccCC
Confidence 45554 44432 5566666666666532 211 1567777777777774 55 47777777777777777775432
Q ss_pred cccCCCCCccEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccccCCccccCCCC
Q 005864 82 EVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKS 161 (673)
Q Consensus 82 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~ 161 (673)
..++|++|++++|.+++. + .++++++|+.|++++|.+++ +|... ++|++|++++|.++ .+| .+..+++
T Consensus 171 ----~~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~ 238 (454)
T 1jl5_A 171 ----LPPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-ELP-ELQNLPF 238 (454)
T ss_dssp ----CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCC-CCTTCTT
T ss_pred ----CcccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-ccc-ccCCCCC
Confidence 224677777777777653 2 46677777777777777764 23221 36666677777666 445 3666666
Q ss_pred CCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCcc--CCchh------------
Q 005864 162 LNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRK--EFPVE------------ 227 (673)
Q Consensus 162 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~------------ 227 (673)
|++|++++|++++ +|.. .++|+.|++++|.+++ +|.. .++|+.|++++|++++ ..|..
T Consensus 239 L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~ 310 (454)
T 1jl5_A 239 LTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR 310 (454)
T ss_dssp CCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCS
T ss_pred CCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCC
Confidence 6666666666663 3322 2456666666665553 3322 1344444554444443 11111
Q ss_pred -hhcc-cCCCeEeecCCcCCCCCcccccCCCcccEEEecCccccccCccccccCCCccEEEccCccccC--CCCC
Q 005864 228 -LEKL-VQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLG--LIPN 298 (673)
Q Consensus 228 -~~~l-~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~--~~~~ 298 (673)
+..+ ++|+.|++++|++++ +|.. +++|+.|++++|+++++ |. .+++|++|++++|++++ .+|.
T Consensus 311 ~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~l-p~---~l~~L~~L~L~~N~l~~l~~ip~ 377 (454)
T 1jl5_A 311 SLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEV-PE---LPQNLKQLHVEYNPLREFPDIPE 377 (454)
T ss_dssp EECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCCCCCT
T ss_pred cccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccc-cc---hhhhccEEECCCCCCCcCCCChH
Confidence 1122 478888888888874 5543 57888888888888854 44 46788888888888888 4554
No 314
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=1.3e-26 Score=254.75 Aligned_cols=253 Identities=26% Similarity=0.260 Sum_probs=208.5
Q ss_pred CCccccCCCcccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccc
Q 005864 2 NHLSGAIPPSVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNIS 81 (673)
Q Consensus 2 n~i~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~ 81 (673)
|+|+ .+|..+. ++|++|+|++|.|+. +|. .+++|++|+|++|+|+ .+|. .+++|++|+|++|++++++.
T Consensus 50 n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l~~ 118 (622)
T 3g06_A 50 SGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTHLPA 118 (622)
T ss_dssp SCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCCCCC
T ss_pred CCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCCCCC
Confidence 5677 7788776 899999999999994 454 5789999999999998 4554 77899999999999997655
Q ss_pred cccCCCCCccEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccccCCccccCCCC
Q 005864 82 EVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKS 161 (673)
Q Consensus 82 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~ 161 (673)
.+++|+.|++++|+++.++. .+++|++|+|++|.+++. |. .+++|+.|++++|.++. +| ..+++
T Consensus 119 ----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~---~~~~~ 182 (622)
T 3g06_A 119 ----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP---MLPSG 182 (622)
T ss_dssp ----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC---CCCTT
T ss_pred ----CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc---ccCCC
Confidence 67889999999999986543 248999999999999853 43 34689999999999984 55 45689
Q ss_pred CCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecC
Q 005864 162 LNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSH 241 (673)
Q Consensus 162 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~ 241 (673)
|+.|++++|.+++ +|. .+++|+.|++++|.++ .+|.. +++|+.|++++|++++ +| ..+++|+.|++++
T Consensus 183 L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~ 250 (622)
T 3g06_A 183 LQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSG 250 (622)
T ss_dssp CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCS
T ss_pred CcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCC
Confidence 9999999999995 443 2478999999999998 45543 4789999999999997 44 4567999999999
Q ss_pred CcCCCCCcccccCCCcccEEEecCccccccCccccccCCCccEEEccCccccCCCCC
Q 005864 242 NFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLGLIPN 298 (673)
Q Consensus 242 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~~ 298 (673)
|.|+ .+|. .+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|.
T Consensus 251 N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 251 NRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp SCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 9998 5665 6789999999999999 4578899999999999999999987664
No 315
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1.8e-28 Score=264.48 Aligned_cols=239 Identities=23% Similarity=0.238 Sum_probs=212.4
Q ss_pred cCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccE
Q 005864 13 GNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTF 92 (673)
Q Consensus 13 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 92 (673)
..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..| |..+++|++|+|++|.|+++++ .++|++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCE
Confidence 344589999999999999888999999999999999999986655 9999999999999999997654 389999
Q ss_pred EEccCCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccccCCcccc-CCCCCCEEEccCcc
Q 005864 93 LDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELG-NLKSLNYLVLNGNK 171 (673)
Q Consensus 93 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~L~~n~ 171 (673)
|++++|.+++..+.. +++|+.|+|++|.+++..|..++.+++|+.|+|++|.+++..|..+. .+++|+.|+|++|.
T Consensus 104 L~L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 104 LHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EECCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 999999999876654 57899999999999988888999999999999999999988888876 79999999999999
Q ss_pred ccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCC-CCCcc
Q 005864 172 LSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLG-GEIPP 250 (673)
Q Consensus 172 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~-~~~~~ 250 (673)
+++..+ +..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+. +.+|.
T Consensus 181 l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 181 IYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred cccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 997633 4468999999999999995 45569999999999999999996 6777889999999999999998 67778
Q ss_pred cccCCCcccEEEecC
Q 005864 251 QICNLESLEKLNVSH 265 (673)
Q Consensus 251 ~~~~l~~L~~L~l~~ 265 (673)
.+..++.|+.|+++.
T Consensus 257 ~~~~l~~L~~l~~~~ 271 (487)
T 3oja_A 257 FFSKNQRVQTVAKQT 271 (487)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHHhCCCCcEEeccc
Confidence 888899998888864
No 316
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=2.9e-27 Score=252.47 Aligned_cols=238 Identities=26% Similarity=0.312 Sum_probs=121.7
Q ss_pred CCccccCCCcccCCCCCCEEEeeCCccccCCCccccCCCCC-------------CEEEcccCccccccCccccCCCCCcE
Q 005864 2 NHLSGAIPPSVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQL-------------TNLEIDNNQLFGQIPRSLRNLASLNR 68 (673)
Q Consensus 2 n~i~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L-------------~~L~L~~n~i~~~~~~~l~~l~~L~~ 68 (673)
|+| +.+|++++++++|++|++++|.+++..|..++++++| ++|++++|++++ +|. -.++|++
T Consensus 21 n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~---~~~~L~~ 95 (454)
T 1jl5_A 21 SNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE---LPPHLES 95 (454)
T ss_dssp --------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS---CCTTCSE
T ss_pred Cch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC---CcCCCCE
Confidence 567 6888888888888888888888888888888777654 777777777764 332 1256777
Q ss_pred EEccCcccccccccccCCCCCccEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccc
Q 005864 69 VHLEQNHLTGNISEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQI 148 (673)
Q Consensus 69 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 148 (673)
|++++|.+++++. .+++|++|++++|.++++... .++|++|++++|.+++ +| .++++++|++|++++|++
T Consensus 96 L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l 165 (454)
T 1jl5_A 96 LVASCNSLTELPE----LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSL 165 (454)
T ss_dssp EECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCC
T ss_pred EEccCCcCCcccc----ccCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcC
Confidence 7777777665432 225566666666655532210 1455666666666554 33 355555666666666655
Q ss_pred cccCCccccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhh
Q 005864 149 VGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVEL 228 (673)
Q Consensus 149 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 228 (673)
++ +|.. .++|++|++++|++++ +| .+..+++|+.|++++|.+++ +|... ++|+.|++++|.++ .+| .+
T Consensus 166 ~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp-~~ 233 (454)
T 1jl5_A 166 KK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-ELP-EL 233 (454)
T ss_dssp SC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCC-CC
T ss_pred cc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-ccc-cc
Confidence 52 3322 1355555555555553 33 35555555555555555553 22221 24555555555554 233 24
Q ss_pred hcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCccccc
Q 005864 229 EKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSG 270 (673)
Q Consensus 229 ~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 270 (673)
..+++|+.|++++|++++ +|.. +++|+.|++++|++++
T Consensus 234 ~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 234 QNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD 271 (454)
T ss_dssp TTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC
T ss_pred CCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc
Confidence 455555555555555542 2221 2344444444444443
No 317
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=1e-29 Score=274.09 Aligned_cols=293 Identities=20% Similarity=0.152 Sum_probs=209.8
Q ss_pred CCccc----cCCCcccCCCCCCEEEeeCCccccCCCccc-cCCC----CCCEEEcccCcccc----ccCccccCCCCCcE
Q 005864 2 NHLSG----AIPPSVGNFTNLKGLYLYSNSLSGSVPGEI-GNLM----QLTNLEIDNNQLFG----QIPRSLRNLASLNR 68 (673)
Q Consensus 2 n~i~~----~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~----~L~~L~L~~n~i~~----~~~~~l~~l~~L~~ 68 (673)
|+|++ .++..+..+++|++|+|++|.+++..+..+ ..++ +|++|+|++|+++. .++..+..+++|++
T Consensus 38 ~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~ 117 (461)
T 1z7x_W 38 CGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 117 (461)
T ss_dssp SCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCE
T ss_pred CCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeE
Confidence 45553 456778888999999999999886544443 3355 69999999999884 44788889999999
Q ss_pred EEccCcccccccccc-----cCCCCCccEEEccCCcccccc----ccCccccCCCcEEEcccCccCccCChhhhc-----
Q 005864 69 VHLEQNHLTGNISEV-----FGIYPNLTFLDISHNNFYGEI----WSSWGKCQQLGTLNFSMNNITGSIPPEIGK----- 134 (673)
Q Consensus 69 L~L~~n~i~~~~~~~-----~~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~----- 134 (673)
|+|++|.++...... +...++|++|+|++|.+++.. +..+..+++|++|++++|.++...+..+..
T Consensus 118 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 197 (461)
T 1z7x_W 118 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDS 197 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHS
T ss_pred EECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcC
Confidence 999999987544332 233567999999999887644 445566788888888888887544444432
Q ss_pred ccccccccccccccccc----CCccccCCCCCCEEEccCccccccC-----CccccCCCCCCEEEeCCCCCCCc----CC
Q 005864 135 LYQLHKLDFSLNQIVGE----IPIELGNLKSLNYLVLNGNKLSGNL-----PRVLGSLSELEYLDLSTNKLSGS----IP 201 (673)
Q Consensus 135 l~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~l~~n~l~~~----~~ 201 (673)
.++|++|++++|.++.. ++..+..+++|++|++++|.+++.. +..+..+++|+.|++++|.+++. ++
T Consensus 198 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 277 (461)
T 1z7x_W 198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC 277 (461)
T ss_dssp CCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred CCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH
Confidence 45888888888888753 4556667788888888888877532 22233577888888888888753 45
Q ss_pred ccccccccccEEEccCCcCccCCchhhhcc-----cCCCeEeecCCcCCCC----CcccccCCCcccEEEecCccccccC
Q 005864 202 ETLGNLLKVHYLNLSNNQFRKEFPVELEKL-----VQLSELDLSHNFLGGE----IPPQICNLESLEKLNVSHNNLSGLI 272 (673)
Q Consensus 202 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~ls~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~ 272 (673)
..+..+++|++|++++|.+++..+..+... ++|+.|++++|.+++. ++..+..+++|++|++++|.+++..
T Consensus 278 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 357 (461)
T 1z7x_W 278 RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG 357 (461)
T ss_dssp HHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH
T ss_pred HHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccccc
Confidence 666677888888888888876555555443 5788888888887754 3455666778888888888877655
Q ss_pred cccccc-----CCCccEEEccCccccC
Q 005864 273 PSCFEG-----MHGLSCIDISYNELLG 294 (673)
Q Consensus 273 ~~~~~~-----~~~L~~l~l~~N~l~~ 294 (673)
+..+.. .++|++|++++|.++.
T Consensus 358 ~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 358 VRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 544442 5678888888887764
No 318
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=6.7e-30 Score=275.58 Aligned_cols=294 Identities=21% Similarity=0.176 Sum_probs=233.7
Q ss_pred CCccccCCCc-ccCCCCCCEEEeeCCccccC----CCccccCCCCCCEEEcccCccccccCcccc-CCC----CCcEEEc
Q 005864 2 NHLSGAIPPS-VGNFTNLKGLYLYSNSLSGS----VPGEIGNLMQLTNLEIDNNQLFGQIPRSLR-NLA----SLNRVHL 71 (673)
Q Consensus 2 n~i~~~~p~~-~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~-~l~----~L~~L~L 71 (673)
|+|+...... +..+++|++|+|++|.+++. ++..+..+++|++|+|++|.+.+..+..+. .++ +|++|+|
T Consensus 13 ~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L 92 (461)
T 1z7x_W 13 EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSL 92 (461)
T ss_dssp CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEEC
T ss_pred cccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEc
Confidence 4555444333 78889999999999999843 466788899999999999999865554433 355 7999999
Q ss_pred cCccccc----ccccccCCCCCccEEEccCCccccccccCccc-----cCCCcEEEcccCccCccC----Chhhhccccc
Q 005864 72 EQNHLTG----NISEVFGIYPNLTFLDISHNNFYGEIWSSWGK-----CQQLGTLNFSMNNITGSI----PPEIGKLYQL 138 (673)
Q Consensus 72 ~~n~i~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-----l~~L~~L~L~~n~l~~~~----~~~l~~l~~L 138 (673)
++|+++. ..+..|..+++|++|+|++|.+++.....+.. .++|++|++++|+++... +..+..+++|
T Consensus 93 ~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 172 (461)
T 1z7x_W 93 QNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 172 (461)
T ss_dssp TTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTC
T ss_pred cCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCC
Confidence 9999995 34778899999999999999998655554433 468999999999999643 5566778999
Q ss_pred cccccccccccccCCcccc-----CCCCCCEEEccCcccccc----CCccccCCCCCCEEEeCCCCCCCcC-----Cccc
Q 005864 139 HKLDFSLNQIVGEIPIELG-----NLKSLNYLVLNGNKLSGN----LPRVLGSLSELEYLDLSTNKLSGSI-----PETL 204 (673)
Q Consensus 139 ~~L~l~~n~i~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~-----~~~l 204 (673)
++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++.. +..+
T Consensus 173 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~ 252 (461)
T 1z7x_W 173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLL 252 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred CEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHh
Confidence 9999999998765444443 356999999999999863 4667788999999999999987543 2223
Q ss_pred cccccccEEEccCCcCccC----CchhhhcccCCCeEeecCCcCCCCCcccccC-----CCcccEEEecCcccccc----
Q 005864 205 GNLLKVHYLNLSNNQFRKE----FPVELEKLVQLSELDLSHNFLGGEIPPQICN-----LESLEKLNVSHNNLSGL---- 271 (673)
Q Consensus 205 ~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~-----l~~L~~L~l~~N~l~~~---- 271 (673)
..+++|+.|++++|.++.. ++..+..+++|+.|++++|.+.+..+..+.. .++|++|++++|.+++.
T Consensus 253 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 332 (461)
T 1z7x_W 253 HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH 332 (461)
T ss_dssp STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred cCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHH
Confidence 3578999999999999864 4667778999999999999997655544443 26999999999999876
Q ss_pred CccccccCCCccEEEccCccccCC
Q 005864 272 IPSCFEGMHGLSCIDISYNELLGL 295 (673)
Q Consensus 272 ~~~~~~~~~~L~~l~l~~N~l~~~ 295 (673)
.+..+..+++|++|++++|++...
T Consensus 333 l~~~l~~~~~L~~L~Ls~n~i~~~ 356 (461)
T 1z7x_W 333 FSSVLAQNRFLLELQISNNRLEDA 356 (461)
T ss_dssp HHHHHHHCSSCCEEECCSSBCHHH
T ss_pred HHHHHhhCCCccEEEccCCccccc
Confidence 456677889999999999998764
No 319
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=2.7e-26 Score=229.25 Aligned_cols=210 Identities=24% Similarity=0.222 Sum_probs=153.6
Q ss_pred CccEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccccCCccccCCCCCCEEEcc
Q 005864 89 NLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLN 168 (673)
Q Consensus 89 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~ 168 (673)
+|++|+|++|.+++..+..|.++++|++|++++|.++...+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555554444455555555555555555555555555666666666666666665555666777777777777
Q ss_pred CccccccCCccccCCCCCCEEEeCCCCCCCc-CCccccccccccEEEccCCcCccCCchhhhcccCCC----eEeecCCc
Q 005864 169 GNKLSGNLPRVLGSLSELEYLDLSTNKLSGS-IPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLS----ELDLSHNF 243 (673)
Q Consensus 169 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~----~L~ls~N~ 243 (673)
+|.+++..+..+..+++|++|++++|.+++. +|..+..+++|+.|++++|++++..+..+..+.+|+ .|++++|.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 7777766555677788888888888888753 577888888888888888888887777777777777 89999999
Q ss_pred CCCCCcccccCCCcccEEEecCccccccCccccccCCCccEEEccCccccCCCCCC
Q 005864 244 LGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLGLIPNS 299 (673)
Q Consensus 244 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~~~ 299 (673)
+.+..+.. ....+|+.|++++|++++..+..|..+++|+.|++++|++.+.+|..
T Consensus 189 l~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 189 MNFIQPGA-FKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp CCEECTTS-SCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred ccccCccc-cCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 98544444 44458999999999999888888899999999999999999988754
No 320
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=5.8e-26 Score=226.81 Aligned_cols=223 Identities=22% Similarity=0.237 Sum_probs=123.0
Q ss_pred EEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEEccCCcc
Q 005864 21 LYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDISHNNF 100 (673)
Q Consensus 21 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i 100 (673)
++..+.+++ .+|..+. ++|++|+|++|++++..+..|.++++|++|+|++|+++++.+..|..+++|++|+|++|.+
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 444444444 3444332 3556666666665554444555555555555555555555555555555555555555555
Q ss_pred ccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccccCCccccCCCCCCEEEccCcccccc-CCcc
Q 005864 101 YGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGN-LPRV 179 (673)
Q Consensus 101 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~ 179 (673)
++..+..+.++++|++|++++|.+++. .+..+..+++|++|++++|.+++. +|..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------~~~~~~~l~~L~~L~l~~n~l~~~~l~~~ 144 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASL------------------------ENFPIGHLKTLKELNVAHNLIQSFKLPEY 144 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCS------------------------TTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred CccChhhhcCCccccEEECCCCCcccc------------------------CchhcccCCCCCEEECcCCccceecCchh
Confidence 554444555555555555555554433 333344455555555555555532 3455
Q ss_pred ccCCCCCCEEEeCCCCCCCcCCcccccccccc----EEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccCC
Q 005864 180 LGSLSELEYLDLSTNKLSGSIPETLGNLLKVH----YLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNL 255 (673)
Q Consensus 180 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l 255 (673)
+..+++|+.|++++|.+++..+..+..+++|+ .|++++|.+++..+..+.. .+|+.|++++|.+++..+..|..+
T Consensus 145 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l 223 (276)
T 2z62_A 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRL 223 (276)
T ss_dssp GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTC
T ss_pred hccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhccc
Confidence 55555666666666655544445555555554 6666666666544444433 366777777777665555556667
Q ss_pred CcccEEEecCcccccc
Q 005864 256 ESLEKLNVSHNNLSGL 271 (673)
Q Consensus 256 ~~L~~L~l~~N~l~~~ 271 (673)
++|+.|++++|++.+.
T Consensus 224 ~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 224 TSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CSCCEEECCSSCBCCC
T ss_pred ccccEEEccCCccccc
Confidence 7777777777776643
No 321
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.93 E-value=4.1e-27 Score=255.85 Aligned_cols=186 Identities=13% Similarity=0.172 Sum_probs=147.9
Q ss_pred CccceeccCCcEEEEEEEeCCCCEEEEEeeccchh-----hhhHHHHHHHHHHHHHhccCCCcccceeeeeecCCeeeEE
Q 005864 405 DAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLL-----SEISVQREFLNEIKALTEIRHRNIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 405 ~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~-----~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 479 (673)
...+.||+|+||+||+|.. .++.+++|+...... ......+.+.+|++++++++||||+++..++...+..++|
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV 417 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM 417 (540)
T ss_dssp ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence 3457899999999999955 578889987644222 1222356689999999999999999777777777888999
Q ss_pred EecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCC
Q 005864 480 YECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKP 559 (673)
Q Consensus 480 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~ 559 (673)
|||+++++|.+++.. +..++.|+++||+|||++ +|+||||||+||+++. .+||+|||+++....
T Consensus 418 mE~~~ggsL~~~l~~-----------~~~i~~qi~~aL~~LH~~---gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~ 481 (540)
T 3en9_A 418 MSYINGKLAKDVIED-----------NLDIAYKIGEIVGKLHKN---DVIHNDLTTSNFIFDK--DLYIIDFGLGKISNL 481 (540)
T ss_dssp EECCCSEEHHHHSTT-----------CTHHHHHHHHHHHHHHHT---TEECTTCCTTSEEESS--SEEECCCTTCEECCC
T ss_pred EECCCCCCHHHHHHH-----------HHHHHHHHHHHHHHHHHC---cCccCCCCHHHEEECC--eEEEEECccCEECCC
Confidence 999999999999875 457999999999999999 9999999999999998 999999999998754
Q ss_pred CCCC-------ceeccccccccccccccc--CCcCcchhHHHHHHHHHHHHhCCCCC
Q 005864 560 GSSN-------WTEFAGTFGYVAPELAYT--MKVTEKCDVYSFGVLALEVIKGKHPR 607 (673)
Q Consensus 560 ~~~~-------~~~~~~~~~y~aPE~~~~--~~~~~~~Dv~slG~il~el~~g~~p~ 607 (673)
.... .....||+.|+|||++.. ..|+..+|+||..+-..+-+.++.+|
T Consensus 482 ~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY 538 (540)
T 3en9_A 482 DEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARY 538 (540)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCC
T ss_pred ccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence 3221 135679999999999976 56888899999999988888877765
No 322
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=8.5e-25 Score=240.39 Aligned_cols=257 Identities=26% Similarity=0.243 Sum_probs=210.1
Q ss_pred CCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEEc
Q 005864 16 TNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDI 95 (673)
Q Consensus 16 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 95 (673)
.+++.|++++|.++ .+|..+. ++|++|+|++|+|+ .+|. .+++|++|+|++|+|+.++. .+++|++|+|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPV----LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCCCC----CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcCCC----CCCCCCEEEC
Confidence 35899999999999 6677665 79999999999998 4554 67999999999999997665 7799999999
Q ss_pred cCCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccccCCccccCCCCCCEEEccCcccccc
Q 005864 96 SHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGN 175 (673)
Q Consensus 96 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~ 175 (673)
++|+++++.. .+++|+.|++++|+++. +|.. +++|++|++++|++++ +|. .+++|+.|++++|.+++
T Consensus 109 s~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~- 175 (622)
T 3g06_A 109 FSNPLTHLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS- 175 (622)
T ss_dssp CSCCCCCCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-
T ss_pred cCCcCCCCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-
Confidence 9999987544 57899999999999995 4543 4899999999999984 443 35789999999999995
Q ss_pred CCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccCC
Q 005864 176 LPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNL 255 (673)
Q Consensus 176 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l 255 (673)
+| ..+++|+.|++++|.+++ +|.. +++|+.|++++|.++.. |.. +++|+.|++++|.+++ +| ..+
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~l-~~~---~~~L~~L~Ls~N~L~~-lp---~~l 240 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSL-PAL---PSGLKELIVSGNRLTS-LP---VLP 240 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSC-CCC---CTTCCEEECCSSCCSC-CC---CCC
T ss_pred Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccccc-CCC---CCCCCEEEccCCccCc-CC---CCC
Confidence 45 457899999999999984 5543 47899999999999954 432 4789999999999995 55 556
Q ss_pred CcccEEEecCccccccCccccccCCCccEEEccCccccCCCCCCcccccCccccccCCcC
Q 005864 256 ESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLGLIPNSTGFQYDPIQALRGNRG 315 (673)
Q Consensus 256 ~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~ 315 (673)
++|+.|+|++|+|+++.+ .+++|+.|++++|.++..++............+.+|+.
T Consensus 241 ~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 241 SELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp TTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred CcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCC
Confidence 899999999999996543 67899999999999995544344445555566777764
No 323
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=5.3e-25 Score=218.87 Aligned_cols=202 Identities=23% Similarity=0.304 Sum_probs=113.5
Q ss_pred CCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEEcc
Q 005864 17 NLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDIS 96 (673)
Q Consensus 17 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 96 (673)
+.+++++++++++ .+|..+. ++|+.|+|++|+++...+.+|.++++|++|+|++|+++.+++..|..+++|++|+|+
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4556666666666 3444333 456666666666654444555556666666666665555555555555555555555
Q ss_pred CCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccccCCccccCCCCCCEEEccCccccccC
Q 005864 97 HNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNL 176 (673)
Q Consensus 97 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 176 (673)
+|.++...+..|..+++|++|++++|.++.. .+..+..+++|++|+|++|.+++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------~~~~~~~l~~L~~L~Ls~n~l~~~~ 149 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSL------------------------PPRVFDSLTKLTYLSLGYNELQSLP 149 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCC------------------------CTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCee------------------------CHHHhCcCcCCCEEECCCCcCCccC
Confidence 5555544444455555555555555555444 4444455555555555555555444
Q ss_pred CccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCC
Q 005864 177 PRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLG 245 (673)
Q Consensus 177 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~ 245 (673)
+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|++.
T Consensus 150 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 444555566666666666665444445555666666666666666555555666666666666666665
No 324
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=6.8e-25 Score=218.09 Aligned_cols=206 Identities=23% Similarity=0.257 Sum_probs=127.3
Q ss_pred CCcEEEccCcccccccccccCCCCCccEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccc
Q 005864 65 SLNRVHLEQNHLTGNISEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFS 144 (673)
Q Consensus 65 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 144 (673)
+++.+++++++++.++... .++|++|+|++|.++.+.+..|.++++|++|+|++|.++...+..|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~------------ 81 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF------------ 81 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTT------------
T ss_pred CCCEEEccCCCCCccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhh------------
Confidence 4566777777766544322 1456666666666665555555555666666666555554333334
Q ss_pred cccccccCCccccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCC
Q 005864 145 LNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEF 224 (673)
Q Consensus 145 ~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 224 (673)
..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..
T Consensus 82 ------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 149 (270)
T 2o6q_A 82 ------------KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP 149 (270)
T ss_dssp ------------SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred ------------cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC
Confidence 44455555555555555444444555555666666666665555555566666666666666666555
Q ss_pred chhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCccccccCccccccCCCccEEEccCccccCCCC
Q 005864 225 PVELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLGLIP 297 (673)
Q Consensus 225 ~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~ 297 (673)
+..|..+++|+.|++++|.+++..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|++.+..+
T Consensus 150 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 5556666677777777777765555566777777777777777777666667777788888888887776654
No 325
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=1.6e-25 Score=222.83 Aligned_cols=160 Identities=26% Similarity=0.267 Sum_probs=81.7
Q ss_pred hhccccccccccccccccccCCccccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCcccccccccc
Q 005864 132 IGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVH 211 (673)
Q Consensus 132 l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 211 (673)
+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|+
T Consensus 81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 160 (272)
T 3rfs_A 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT 160 (272)
T ss_dssp GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCC
Confidence 34444444444444444433333344444555555555555444444444555555555555555544444445555555
Q ss_pred EEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCccccccCccccccCCCccEEEccCcc
Q 005864 212 YLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNE 291 (673)
Q Consensus 212 ~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~ 291 (673)
.|++++|++++..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+. ++.|+.+++++|.
T Consensus 161 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 161 ELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINK 233 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHH
T ss_pred EEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHh
Confidence 555555555544444455555555555555555554444455555555555555555432 3345566666666
Q ss_pred ccCCCCC
Q 005864 292 LLGLIPN 298 (673)
Q Consensus 292 l~~~~~~ 298 (673)
++|.+|.
T Consensus 234 ~~g~ip~ 240 (272)
T 3rfs_A 234 HSGVVRN 240 (272)
T ss_dssp TGGGBBC
T ss_pred CCCcccC
Confidence 6666554
No 326
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=2.9e-26 Score=238.31 Aligned_cols=255 Identities=20% Similarity=0.204 Sum_probs=135.4
Q ss_pred EEeeCCccccCCCccccCCCCCCEEEcccCccccccC----ccccCCC-CCcEEEccCcccccccccccCCC-----CCc
Q 005864 21 LYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIP----RSLRNLA-SLNRVHLEQNHLTGNISEVFGIY-----PNL 90 (673)
Q Consensus 21 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~----~~l~~l~-~L~~L~L~~n~i~~~~~~~~~~l-----~~L 90 (673)
+.|++|.+++..|..+...++|++|+|++|.+++..+ .+|..++ +|++|+|++|+++...+..|..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4566666666666555555556666666666665544 5555666 66666666666665544444442 566
Q ss_pred cEEEccCCccccccccCccc----c-CCCcEEEcccCccCccCChhhhccccccccccccccccccCCccccC-CCCCCE
Q 005864 91 TFLDISHNNFYGEIWSSWGK----C-QQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGN-LKSLNY 164 (673)
Q Consensus 91 ~~L~L~~n~i~~~~~~~~~~----l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~-l~~L~~ 164 (673)
++|+|++|.+++..+..+.. + ++|++|+|++|.++...+..+... +.. .++|++
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~--------------------l~~~~~~L~~ 142 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA--------------------FSNLPASITS 142 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH--------------------HTTSCTTCCE
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHH--------------------HHhCCCceeE
Confidence 66666666655444433222 2 455555555555554433333221 112 135555
Q ss_pred EEccCccccccC----CccccCCC-CCCEEEeCCCCCCCcCCcccc----cc-ccccEEEccCCcCccCC----chhhhc
Q 005864 165 LVLNGNKLSGNL----PRVLGSLS-ELEYLDLSTNKLSGSIPETLG----NL-LKVHYLNLSNNQFRKEF----PVELEK 230 (673)
Q Consensus 165 L~L~~n~l~~~~----~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~----~l-~~L~~L~l~~n~l~~~~----~~~~~~ 230 (673)
|+|++|.+++.. +..+..++ +|++|+|++|.+++..+..+. .+ ++|+.|+|++|.+++.. +..+..
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 555555555322 22223333 566666666665544443332 22 36666666666665432 223333
Q ss_pred -ccCCCeEeecCCcCCCCCcc----cccCCCcccEEEecCccccccCc-------cccccCCCccEEEccCccccCC
Q 005864 231 -LVQLSELDLSHNFLGGEIPP----QICNLESLEKLNVSHNNLSGLIP-------SCFEGMHGLSCIDISYNELLGL 295 (673)
Q Consensus 231 -l~~L~~L~ls~N~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~-------~~~~~~~~L~~l~l~~N~l~~~ 295 (673)
.++|+.|+|++|.+++..+. .+..+++|+.|+|++|.+.+..+ ..+..+++|+.||+++|++...
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 23666666666666654332 23455667777777776444333 2455666677777777776543
No 327
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=1.5e-24 Score=217.38 Aligned_cols=202 Identities=25% Similarity=0.253 Sum_probs=91.6
Q ss_pred ccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEEccCCccccccccCccccCCCc
Q 005864 36 IGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLG 115 (673)
Q Consensus 36 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 115 (673)
+.++++|+.+++++|+++ .+|..+. ++|+.|+|++|+++++.+..|..+++|++|+|++|.++++... +.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 445555556666555555 3333322 4555555555555555555555555555555555555433221 3333444
Q ss_pred EEEcccCccCccCChhhhccccccccccccccccccCCccccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCC
Q 005864 116 TLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNK 195 (673)
Q Consensus 116 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 195 (673)
+|+|++|.++ .+|..+..+++|++|++++|++++..+..|..+++|+.|++++|.
T Consensus 81 ~L~Ls~N~l~-------------------------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 135 (290)
T 1p9a_G 81 TLDLSHNQLQ-------------------------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135 (290)
T ss_dssp EEECCSSCCS-------------------------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-------------------------cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC
Confidence 4444444333 223333444444444444444443333444444444444444444
Q ss_pred CCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCccc
Q 005864 196 LSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNL 268 (673)
Q Consensus 196 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 268 (673)
+++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ .+|..+..+.+|+.|+|++|++
T Consensus 136 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 44333333444444444444444444333333444444444444444444 3333333334444444444433
No 328
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=2.1e-24 Score=216.33 Aligned_cols=204 Identities=23% Similarity=0.248 Sum_probs=164.0
Q ss_pred cccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCc
Q 005864 11 SVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNL 90 (673)
Q Consensus 11 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 90 (673)
.++++++++++++++++++ .+|..+. ++|+.|+|++|.+++..+..|..+++|+.|+|++|+|+.+... ..+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 4788999999999999999 5565554 6899999999999988889999999999999999999977553 789999
Q ss_pred cEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccccCCccccCCCCCCEEEccCc
Q 005864 91 TFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGN 170 (673)
Q Consensus 91 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n 170 (673)
++|+|++|.++. .+..+..+++|+.|++++|+++...+..|..+++|++|+|++|+++...+..|..+++|+.|+|++|
T Consensus 80 ~~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 999999999984 4567788899999999999998777777888888888888888877666666677777777777777
Q ss_pred cccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCc
Q 005864 171 KLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFR 221 (673)
Q Consensus 171 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 221 (673)
+++...+..|..+++|+.|+|++|.++ .+|..+...++|+.|+|++|++.
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 777555556667777777777777776 55666666666666666666654
No 329
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=5e-25 Score=219.23 Aligned_cols=229 Identities=19% Similarity=0.185 Sum_probs=182.4
Q ss_pred CCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEEc
Q 005864 16 TNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDI 95 (673)
Q Consensus 16 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 95 (673)
.++..+.+..+.+... ..+..+++|+.|++++|.+.. ...+..+++|++|+|++|.+++. ..+..+++|++|+|
T Consensus 19 ~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 19 AETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC
T ss_pred HHHHHHHhcCcccccc--cccccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEEC
Confidence 3455566666666633 345677888888888888763 23577888888888888888764 36778888888888
Q ss_pred cCCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccccCCccccCCCCCCEEEccCcccccc
Q 005864 96 SHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGN 175 (673)
Q Consensus 96 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~ 175 (673)
++|.+++..+..+.++++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|++++.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence 88888877777788888888888888888877777788888888888888888866666778888999999999998877
Q ss_pred CCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccCC
Q 005864 176 LPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNL 255 (673)
Q Consensus 176 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l 255 (673)
.+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+. +++|+.|+++.|.++|.+|..++.+
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence 777788889999999999999877777788889999999999988753 4478888999999998888887766
Q ss_pred Cc
Q 005864 256 ES 257 (673)
Q Consensus 256 ~~ 257 (673)
..
T Consensus 246 ~~ 247 (272)
T 3rfs_A 246 AP 247 (272)
T ss_dssp CG
T ss_pred CC
Confidence 54
No 330
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=2.4e-26 Score=238.89 Aligned_cols=254 Identities=18% Similarity=0.191 Sum_probs=165.3
Q ss_pred CCCccccCCCcccCCCCCCEEEeeCCccccCCC----ccccCCC-CCCEEEcccCccccccCccccCC-----CCCcEEE
Q 005864 1 MNHLSGAIPPSVGNFTNLKGLYLYSNSLSGSVP----GEIGNLM-QLTNLEIDNNQLFGQIPRSLRNL-----ASLNRVH 70 (673)
Q Consensus 1 ~n~i~~~~p~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~-~L~~L~L~~n~i~~~~~~~l~~l-----~~L~~L~ 70 (673)
.|++++.+|..+...++|++|+|++|.+++..+ ..|.+++ +|++|+|++|.+++..+..+..+ ++|++|+
T Consensus 7 ~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 86 (362)
T 3goz_A 7 LHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLN 86 (362)
T ss_dssp CCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred cccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEE
Confidence 478999999998888889999999999998777 7888999 99999999999998878777775 9999999
Q ss_pred ccCcccccccccc----cCCC-CCccEEEccCCccccccccCccc-----cCCCcEEEcccCccCccCChhh----hccc
Q 005864 71 LEQNHLTGNISEV----FGIY-PNLTFLDISHNNFYGEIWSSWGK-----CQQLGTLNFSMNNITGSIPPEI----GKLY 136 (673)
Q Consensus 71 L~~n~i~~~~~~~----~~~l-~~L~~L~L~~n~i~~~~~~~~~~-----l~~L~~L~L~~n~l~~~~~~~l----~~l~ 136 (673)
|++|++++..+.. +..+ ++|++|+|++|.+++.....+.. .++|++|+|++|.++...+..+ ..++
T Consensus 87 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 166 (362)
T 3goz_A 87 LSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP 166 (362)
T ss_dssp CCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSC
T ss_pred CcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCC
Confidence 9999999776664 4444 89999999999998776655543 3689999999998886444333 3333
Q ss_pred -cccccccccccccccCCccc----cCC-CCCCEEEccCcccccc----CCccccC-CCCCCEEEeCCCCCCCcCC----
Q 005864 137 -QLHKLDFSLNQIVGEIPIEL----GNL-KSLNYLVLNGNKLSGN----LPRVLGS-LSELEYLDLSTNKLSGSIP---- 201 (673)
Q Consensus 137 -~L~~L~l~~n~i~~~~~~~l----~~l-~~L~~L~L~~n~l~~~----~~~~l~~-l~~L~~L~l~~n~l~~~~~---- 201 (673)
+|++|+|++|++++..+..+ ..+ ++|++|+|++|.+++. ++..+.. .++|+.|+|++|.+++..+
T Consensus 167 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 246 (362)
T 3goz_A 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK 246 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH
T ss_pred ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH
Confidence 66666666666654433222 223 3555555555555531 2222222 2345555555555543222
Q ss_pred ccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCcccccc
Q 005864 202 ETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGL 271 (673)
Q Consensus 202 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 271 (673)
..+..+++|+.|++++|.+.+..+..+. .++..+..+++|+.|++++|++...
T Consensus 247 ~~~~~l~~L~~L~L~~n~l~~i~~~~~~-----------------~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 247 LLKDSLKHLQTVYLDYDIVKNMSKEQCK-----------------ALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HTTTTTTTCSEEEEEHHHHTTCCHHHHH-----------------HHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHhcCCCccEEEeccCCccccCHHHHH-----------------HHHHHhccCCceEEEecCCCcCCCc
Confidence 1123334444444444443322222111 1122345556666666666666544
No 331
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=3.2e-26 Score=240.45 Aligned_cols=259 Identities=17% Similarity=0.143 Sum_probs=181.1
Q ss_pred CCCccccCCCCCCEEEcccCccccccC----ccccCCCCCcEEEccCcccc---cccccc-------cCCCCCccEEEcc
Q 005864 31 SVPGEIGNLMQLTNLEIDNNQLFGQIP----RSLRNLASLNRVHLEQNHLT---GNISEV-------FGIYPNLTFLDIS 96 (673)
Q Consensus 31 ~~~~~~~~l~~L~~L~L~~n~i~~~~~----~~l~~l~~L~~L~L~~n~i~---~~~~~~-------~~~l~~L~~L~L~ 96 (673)
.++..+..+++|++|+|++|.++...+ ..|..+++|++|+|++|.+. +..+.. |..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 455667777788888888887775533 33667788888888876544 222222 3677888888888
Q ss_pred CCcccc----ccccCccccCCCcEEEcccCccCccCChhhh----cc---------ccccccccccccccc-cCC---cc
Q 005864 97 HNNFYG----EIWSSWGKCQQLGTLNFSMNNITGSIPPEIG----KL---------YQLHKLDFSLNQIVG-EIP---IE 155 (673)
Q Consensus 97 ~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~----~l---------~~L~~L~l~~n~i~~-~~~---~~ 155 (673)
+|.++. ..+..+..+++|++|+|++|.++...+..+. .+ ++|++|++++|+++. ..+ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 888876 3455667778888888888887644333333 33 788888888888862 233 35
Q ss_pred ccCCCCCCEEEccCccccc-----cCCccccCCCCCCEEEeCCCCCC----CcCCccccccccccEEEccCCcCccC---
Q 005864 156 LGNLKSLNYLVLNGNKLSG-----NLPRVLGSLSELEYLDLSTNKLS----GSIPETLGNLLKVHYLNLSNNQFRKE--- 223 (673)
Q Consensus 156 l~~l~~L~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~l~~n~l~----~~~~~~l~~l~~L~~L~l~~n~l~~~--- 223 (673)
+..+++|++|+|++|+++. ..+..+..+++|+.|+|++|.++ ..+|..+..+++|+.|+|++|.+++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 6677888888888888873 23336778888888888888885 45677788888888888888888765
Q ss_pred -Cchhhhc--ccCCCeEeecCCcCCC----CCcccc-cCCCcccEEEecCccccccCc--ccc-ccCCCccEEEccC
Q 005864 224 -FPVELEK--LVQLSELDLSHNFLGG----EIPPQI-CNLESLEKLNVSHNNLSGLIP--SCF-EGMHGLSCIDISY 289 (673)
Q Consensus 224 -~~~~~~~--l~~L~~L~ls~N~l~~----~~~~~~-~~l~~L~~L~l~~N~l~~~~~--~~~-~~~~~L~~l~l~~ 289 (673)
++..+.. +++|+.|+|++|.+++ .+|..+ .++++|+.|++++|++++..+ ..+ ..++.++.+++..
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 3445533 7888999999998886 366666 557889999999998887763 222 2344554444433
No 332
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=4.5e-24 Score=208.12 Aligned_cols=199 Identities=17% Similarity=0.175 Sum_probs=103.7
Q ss_pred CCCEEEcccCccccccCccccCCCCCcEEEccCcc-cccccccccCCCCCccEEEccC-CccccccccCccccCCCcEEE
Q 005864 41 QLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNH-LTGNISEVFGIYPNLTFLDISH-NNFYGEIWSSWGKCQQLGTLN 118 (673)
Q Consensus 41 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~ 118 (673)
+|++|++++|+++...+..|.++++|++|++++|+ ++.+.+..|..+++|++|+|++ |.++.+.+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666655444455556666666666654 5555555555555555555555 555555555555555555555
Q ss_pred cccCccCccCChhhhccccccccccccccccccCCccccCCCCCCEEEccCc-cccccCCccccCCCCCC-EEEeCCCCC
Q 005864 119 FSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGN-KLSGNLPRVLGSLSELE-YLDLSTNKL 196 (673)
Q Consensus 119 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~l 196 (673)
+++|.+++ +|. +..+++|+ .|++|++++| .+++..+..|..+++|+ .|++++|.+
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~---------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTD---------------------IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCC---------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred CCCCCCcc-ccc-cccccccc---------------------cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence 55555553 222 33333333 0005555555 44444444455555555 555555555
Q ss_pred CCcCCccccccccccEEEccCCc-CccCCchhhhcc-cCCCeEeecCCcCCCCCcccccCCCcccEEEecCc
Q 005864 197 SGSIPETLGNLLKVHYLNLSNNQ-FRKEFPVELEKL-VQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHN 266 (673)
Q Consensus 197 ~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l-~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N 266 (673)
+...+..+.. ++|+.|++++|+ +++..+..|..+ ++|+.|++++|++++ +|.. .+++|+.|+++++
T Consensus 169 ~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 169 TSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred cccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 5222222322 555666666663 555555555555 566666666666652 3322 4556666666554
No 333
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=5.8e-24 Score=207.34 Aligned_cols=203 Identities=20% Similarity=0.204 Sum_probs=163.9
Q ss_pred cCCCcccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCc-cccccCccccCCCCCcEEEccC-ccccccccccc
Q 005864 7 AIPPSVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQ-LFGQIPRSLRNLASLNRVHLEQ-NHLTGNISEVF 84 (673)
Q Consensus 7 ~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~l~~l~~L~~L~L~~-n~i~~~~~~~~ 84 (673)
.+|. +. ++|++|+|++|+++++.+..|+++++|++|++++|+ ++...+.+|.++++|++|++++ |+++.+++..|
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 5676 54 489999999999998888899999999999999997 8877778999999999999999 99999999999
Q ss_pred CCCCCccEEEccCCccccccccCccccCCCc---EEEcccC-ccCccCChhhhcccccc-ccccccccccccCCccccCC
Q 005864 85 GIYPNLTFLDISHNNFYGEIWSSWGKCQQLG---TLNFSMN-NITGSIPPEIGKLYQLH-KLDFSLNQIVGEIPIELGNL 159 (673)
Q Consensus 85 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~i~~~~~~~l~~l 159 (673)
..+++|++|++++|.+++.+ . +..+++|+ .|++++| .++...+..|..+++|+ +|++++|+++...+..+..
T Consensus 102 ~~l~~L~~L~l~~n~l~~lp-~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~- 178 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKMFP-D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG- 178 (239)
T ss_dssp ECCTTCCEEEEEEECCCSCC-C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-
T ss_pred CCCCCCCEEeCCCCCCcccc-c-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-
Confidence 99999999999999998743 3 88888888 9999999 88877777788888888 8888888887433333433
Q ss_pred CCCCEEEccCcc-ccccCCccccCC-CCCCEEEeCCCCCCCcCCccccccccccEEEccCC
Q 005864 160 KSLNYLVLNGNK-LSGNLPRVLGSL-SELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNN 218 (673)
Q Consensus 160 ~~L~~L~L~~n~-l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 218 (673)
++|+.|++++|+ ++...+..|..+ ++|+.|++++|.+++ +|.. .+++|+.|+++++
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 778888888884 776666667777 777777777777763 3332 4556666666654
No 334
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=3.3e-26 Score=240.31 Aligned_cols=250 Identities=18% Similarity=0.211 Sum_probs=202.0
Q ss_pred EcccCccccccCccccCCCCCcEEEccCcccccccc----cccCCCCCccEEEccCCccc---cccccCc-------ccc
Q 005864 46 EIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNIS----EVFGIYPNLTFLDISHNNFY---GEIWSSW-------GKC 111 (673)
Q Consensus 46 ~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~i~---~~~~~~~-------~~l 111 (673)
.++...+. .++..+..+++|++|+|++|+++...+ ..|..+++|++|+|++|.+. +..+..+ ..+
T Consensus 15 ~l~~~~~~-~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~ 93 (386)
T 2ca6_A 15 AITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC 93 (386)
T ss_dssp SCCSHHHH-TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC
T ss_pred CCCHHHHH-HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhC
Confidence 33444443 566788899999999999999996644 44778999999999997544 3333333 688
Q ss_pred CCCcEEEcccCccCc----cCChhhhccccccccccccccccccCCcccc----CC---------CCCCEEEccCccccc
Q 005864 112 QQLGTLNFSMNNITG----SIPPEIGKLYQLHKLDFSLNQIVGEIPIELG----NL---------KSLNYLVLNGNKLSG 174 (673)
Q Consensus 112 ~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~----~l---------~~L~~L~L~~n~l~~ 174 (673)
++|++|+|++|.++. .++..+..+++|++|+|++|.++...+..+. .+ ++|++|+|++|+++.
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 999999999999997 3677889999999999999999754443333 33 899999999999973
Q ss_pred -cCC---ccccCCCCCCEEEeCCCCCCC-----cCCccccccccccEEEccCCcCc----cCCchhhhcccCCCeEeecC
Q 005864 175 -NLP---RVLGSLSELEYLDLSTNKLSG-----SIPETLGNLLKVHYLNLSNNQFR----KEFPVELEKLVQLSELDLSH 241 (673)
Q Consensus 175 -~~~---~~l~~l~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~ls~ 241 (673)
..+ ..+..+++|+.|++++|.++. ..+..+..+++|+.|+|++|.++ ..+|..+..+++|+.|+|++
T Consensus 174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253 (386)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence 333 467788999999999999973 33447889999999999999996 55778889999999999999
Q ss_pred CcCCCC----Ccccc--cCCCcccEEEecCccccc----cCcccc-ccCCCccEEEccCccccCCC
Q 005864 242 NFLGGE----IPPQI--CNLESLEKLNVSHNNLSG----LIPSCF-EGMHGLSCIDISYNELLGLI 296 (673)
Q Consensus 242 N~l~~~----~~~~~--~~l~~L~~L~l~~N~l~~----~~~~~~-~~~~~L~~l~l~~N~l~~~~ 296 (673)
|.+++. ++..+ +.+++|+.|+|++|.+++ .+|..+ .++++|+.|++++|++++..
T Consensus 254 n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 999865 45666 348999999999999998 467666 66899999999999988654
No 335
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=3.1e-25 Score=228.42 Aligned_cols=232 Identities=15% Similarity=0.191 Sum_probs=118.5
Q ss_pred CCCcEEEccCcccccccccccCCCCCccEEEccCCccccc-cccCccccCCCcEEEcccCccCccCChhhhccccccccc
Q 005864 64 ASLNRVHLEQNHLTGNISEVFGIYPNLTFLDISHNNFYGE-IWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLD 142 (673)
Q Consensus 64 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 142 (673)
++++.|++++|.+.+..+. +..+++|++|+|++|.+++. .+..+..+++|++|+|++|.+++..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4444444444444433333 22344444444444444432 333344444555555555544444444444455555555
Q ss_pred cccc-ccccc-CCccccCCCCCCEEEccCc-ccccc-CCccccCCC-CCCEEEeCCC--CCC-CcCCccccccccccEEE
Q 005864 143 FSLN-QIVGE-IPIELGNLKSLNYLVLNGN-KLSGN-LPRVLGSLS-ELEYLDLSTN--KLS-GSIPETLGNLLKVHYLN 214 (673)
Q Consensus 143 l~~n-~i~~~-~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~-~L~~L~l~~n--~l~-~~~~~~l~~l~~L~~L~ 214 (673)
+++| .+++. .+..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|+.|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 5555 34321 3333445555666666655 55532 334455555 6666666666 333 23444555666666666
Q ss_pred ccCCc-CccCCchhhhcccCCCeEeecCCc-CCCCCcccccCCCcccEEEecCccccccCccccccC-CCccEEEccCcc
Q 005864 215 LSNNQ-FRKEFPVELEKLVQLSELDLSHNF-LGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGM-HGLSCIDISYNE 291 (673)
Q Consensus 215 l~~n~-l~~~~~~~~~~l~~L~~L~ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~-~~L~~l~l~~N~ 291 (673)
+++|. +++..+..+..+++|+.|++++|. +.......+..+++|+.|++++| +.. ..+..+ ..+..|++++|.
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSH 304 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCC
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEeccc
Confidence 66666 555555566666666666666664 22222224566677777777776 332 223332 224555577777
Q ss_pred ccCCCCCCc
Q 005864 292 LLGLIPNST 300 (673)
Q Consensus 292 l~~~~~~~~ 300 (673)
+++..|...
T Consensus 305 l~~~~~~~~ 313 (336)
T 2ast_B 305 FTTIARPTI 313 (336)
T ss_dssp SCCTTCSSC
T ss_pred CccccCCcc
Confidence 777666543
No 336
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=3.3e-25 Score=228.26 Aligned_cols=254 Identities=17% Similarity=0.207 Sum_probs=205.1
Q ss_pred CCCEEEeeCCccccCCCccccCC--CCCCEEEcccCccccccCccccCCCCCcEEEccCcccccc-cccccCCCCCccEE
Q 005864 17 NLKGLYLYSNSLSGSVPGEIGNL--MQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGN-ISEVFGIYPNLTFL 93 (673)
Q Consensus 17 ~L~~L~L~~n~i~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L 93 (673)
.++.|+++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|+|++|.++.. .+..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4789999998887 5667777 8999999999999866554 56789999999999998865 66788899999999
Q ss_pred EccCCccccccccCccccCCCcEEEcccC-ccCcc-CChhhhccccccccccccc-ccccc-CCccccCCC-CCCEEEcc
Q 005864 94 DISHNNFYGEIWSSWGKCQQLGTLNFSMN-NITGS-IPPEIGKLYQLHKLDFSLN-QIVGE-IPIELGNLK-SLNYLVLN 168 (673)
Q Consensus 94 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~l~~n-~i~~~-~~~~l~~l~-~L~~L~L~ 168 (673)
+|++|.+++..+..++.+++|++|+|++| .+++. .+..+..+++|++|++++| .+++. .+..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 99999998777888889999999999999 67753 5666888999999999999 88754 466677888 99999999
Q ss_pred Cc--ccc-ccCCccccCCCCCCEEEeCCCC-CCCcCCccccccccccEEEccCCc-CccCCchhhhcccCCCeEeecCCc
Q 005864 169 GN--KLS-GNLPRVLGSLSELEYLDLSTNK-LSGSIPETLGNLLKVHYLNLSNNQ-FRKEFPVELEKLVQLSELDLSHNF 243 (673)
Q Consensus 169 ~n--~l~-~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ls~N~ 243 (673)
+| .++ +.++..+..+++|+.|++++|. +++..+..+..+++|+.|++++|. +.......+..+++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 99 454 3456667789999999999999 776777888999999999999995 33333336788999999999999
Q ss_pred CCCCCcccccCC-CcccEEEecCccccccCcccccc
Q 005864 244 LGGEIPPQICNL-ESLEKLNVSHNNLSGLIPSCFEG 278 (673)
Q Consensus 244 l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~ 278 (673)
++.. .+..+ ..++.|++++|++++..|..+..
T Consensus 283 i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 283 VPDG---TLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred cCHH---HHHHHHhhCcceEEecccCccccCCcccc
Confidence 5533 23333 34777779999999988876654
No 337
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=6.1e-24 Score=215.80 Aligned_cols=224 Identities=16% Similarity=0.157 Sum_probs=166.5
Q ss_pred CCcEEEccCccccccccc---ccCCCCCccEEEccCCccccccccCc--cccCCCcEEEcccCccCccCC----hhhhcc
Q 005864 65 SLNRVHLEQNHLTGNISE---VFGIYPNLTFLDISHNNFYGEIWSSW--GKCQQLGTLNFSMNNITGSIP----PEIGKL 135 (673)
Q Consensus 65 ~L~~L~L~~n~i~~~~~~---~~~~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~l~~l 135 (673)
.++.|.+.++.++..... .+..+++|++|+|++|.+.+..+..+ ..+++|++|+|++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 466677776666522111 11234568888888888877777776 778888888888888876444 344567
Q ss_pred ccccccccccccccccCCccccCCCCCCEEEccCcccccc---C-CccccCCCCCCEEEeCCCCCCCcCCc----ccccc
Q 005864 136 YQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGN---L-PRVLGSLSELEYLDLSTNKLSGSIPE----TLGNL 207 (673)
Q Consensus 136 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~---~-~~~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l 207 (673)
++|++|++++|++.+..+..+..+++|++|+|++|++.+. . +..+..+++|++|++++|.++ .++. .+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcC
Confidence 8888888888888877778888888888888888887642 1 233467888999999999886 3333 24677
Q ss_pred ccccEEEccCCcCccCCchhhhcc---cCCCeEeecCCcCCCCCcccccCCCcccEEEecCccccccCccccccCCCccE
Q 005864 208 LKVHYLNLSNNQFRKEFPVELEKL---VQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSC 284 (673)
Q Consensus 208 ~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~ 284 (673)
++|++|+|++|++++..|..+..+ ++|+.|+|++|+++ .+|..+. ++|+.|+|++|+|++. |. +..+++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 889999999999988777766666 68999999999998 6676664 7899999999999876 32 678899999
Q ss_pred EEccCccccC
Q 005864 285 IDISYNELLG 294 (673)
Q Consensus 285 l~l~~N~l~~ 294 (673)
|++++|+++.
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 9999998864
No 338
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=2.2e-23 Score=211.14 Aligned_cols=195 Identities=27% Similarity=0.334 Sum_probs=130.8
Q ss_pred ccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEEccCCccccccccCccccCCCc
Q 005864 36 IGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLG 115 (673)
Q Consensus 36 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 115 (673)
++.+++|++|++++|.+.. ++ .+..+++|++|+|++|+++++.+ +..+++|++|+|++|.+++. ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 3455666666666666653 23 46666666666666666665544 66666677777776666543 2466666777
Q ss_pred EEEcccCccCccCChhhhccccccccccccccccccCCccccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCC
Q 005864 116 TLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNK 195 (673)
Q Consensus 116 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 195 (673)
+|++++|.+++. + .+..+++|++|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|.
T Consensus 111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 777777776643 2 36667777777777777764322 6677777777777777774332 7777788888888887
Q ss_pred CCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCC
Q 005864 196 LSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGG 246 (673)
Q Consensus 196 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 246 (673)
+++..+ +..+++|+.|++++|++++.. .+..+++|+.|++++|++++
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 774432 677778888888888887644 36777788888888888763
No 339
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=1.5e-23 Score=213.00 Aligned_cols=225 Identities=18% Similarity=0.160 Sum_probs=185.8
Q ss_pred CCCCEEEeeCCccccCCCc---cccCCCCCCEEEcccCccccccCccc--cCCCCCcEEEccCcccccccc----cccCC
Q 005864 16 TNLKGLYLYSNSLSGSVPG---EIGNLMQLTNLEIDNNQLFGQIPRSL--RNLASLNRVHLEQNHLTGNIS----EVFGI 86 (673)
Q Consensus 16 ~~L~~L~L~~n~i~~~~~~---~~~~l~~L~~L~L~~n~i~~~~~~~l--~~l~~L~~L~L~~n~i~~~~~----~~~~~ 86 (673)
..++.|.+.++.++..... .+..+++|++|+|++|.+.+..|..+ ..+++|++|+|++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4578899988887632111 12345779999999999998889888 899999999999999996433 44567
Q ss_pred CCCccEEEccCCccccccccCccccCCCcEEEcccCccCcc----CChhhhccccccccccccccccccCCc----cccC
Q 005864 87 YPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGS----IPPEIGKLYQLHKLDFSLNQIVGEIPI----ELGN 158 (673)
Q Consensus 87 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~i~~~~~~----~l~~ 158 (673)
+++|++|+|++|.+.+..+..++.+++|++|+|++|++.+. .+..+..+++|++|++++|+++. .+. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 99999999999999988889999999999999999998742 12345788999999999999972 222 2567
Q ss_pred CCCCCEEEccCccccccCCccccCC---CCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCC
Q 005864 159 LKSLNYLVLNGNKLSGNLPRVLGSL---SELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLS 235 (673)
Q Consensus 159 l~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 235 (673)
+++|++|+|++|++++..|..+..+ ++|++|++++|.++ .+|..+. ++|+.|+|++|++++. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 8999999999999998877777766 69999999999999 6777764 7999999999999975 33 67889999
Q ss_pred eEeecCCcCCC
Q 005864 236 ELDLSHNFLGG 246 (673)
Q Consensus 236 ~L~ls~N~l~~ 246 (673)
.|++++|++++
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 99999999974
No 340
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.89 E-value=1.3e-23 Score=209.20 Aligned_cols=155 Identities=19% Similarity=0.144 Sum_probs=123.4
Q ss_pred HHHHHHhcCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhh---------------HHHHHHHHHHHHHhccC
Q 005864 395 EEIIRATKNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEI---------------SVQREFLNEIKALTEIR 459 (673)
Q Consensus 395 ~~~~~~~~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~---------------~~~~~~~~e~~~l~~l~ 459 (673)
..+......|.+.+.||+|+||.||+|.+.+|+.||+|.++....... .....+.+|+.++++++
T Consensus 83 ~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~ 162 (282)
T 1zar_A 83 HRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ 162 (282)
T ss_dssp HHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc
Confidence 444555667888899999999999999887899999999864322110 23567899999999999
Q ss_pred CCcccceeeeeecCCeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeE
Q 005864 460 HRNIVKFYGFCSHPRHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVL 539 (673)
Q Consensus 460 h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nil 539 (673)
| +++.+++.. +..++||||+++|+|.+ +.. .....++.|++.||.|||+. +|+||||||+||+
T Consensus 163 --~-~~v~~~~~~-~~~~lvmE~~~g~~L~~-l~~---------~~~~~i~~qi~~~l~~lH~~---giiHrDlkp~NIL 225 (282)
T 1zar_A 163 --G-LAVPKVYAW-EGNAVLMELIDAKELYR-VRV---------ENPDEVLDMILEEVAKFYHR---GIVHGDLSQYNVL 225 (282)
T ss_dssp --T-SSSCCEEEE-ETTEEEEECCCCEEGGG-CCC---------SCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEE
T ss_pred --C-CCcCeEEec-cceEEEEEecCCCcHHH-cch---------hhHHHHHHHHHHHHHHHHHC---CCEeCCCCHHHEE
Confidence 5 677776543 55699999999999998 432 12346999999999999999 9999999999999
Q ss_pred eCCCCceEEecccceeecCCCCCCceecccccccccccccc
Q 005864 540 LSSEYEARVSDFGIAKFLKPGSSNWTEFAGTFGYVAPELAY 580 (673)
Q Consensus 540 l~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~ 580 (673)
++ ++.+||+|||+++.. ..|+|||++.
T Consensus 226 l~-~~~vkl~DFG~a~~~-------------~~~~a~e~l~ 252 (282)
T 1zar_A 226 VS-EEGIWIIDFPQSVEV-------------GEEGWREILE 252 (282)
T ss_dssp EE-TTEEEECCCTTCEET-------------TSTTHHHHHH
T ss_pred EE-CCcEEEEECCCCeEC-------------CCCCHHHHHH
Confidence 99 999999999999743 3468888864
No 341
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=1.1e-22 Score=199.87 Aligned_cols=182 Identities=23% Similarity=0.265 Sum_probs=134.6
Q ss_pred CCcEEEcccCccCccCChhhhccccccccccccccccccCCccccCCCCCCEEEccCccccccCCccccCCCCCCEEEeC
Q 005864 113 QLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLS 192 (673)
Q Consensus 113 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 192 (673)
..+.++++++.++ .+|..+. ++|+.|+|++|.+++..+..+..+++|++|+|++|.+++..+..|..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4456666666666 3444333 466777777777776666667777777777777777776666667777777777777
Q ss_pred CCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCccccccC
Q 005864 193 TNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGLI 272 (673)
Q Consensus 193 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 272 (673)
+|.+++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+++..+..|..+++|++|+|++|++++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 77777666667777778888888888887766666777888888888888888666667788888888888888888777
Q ss_pred ccccccCCCccEEEccCccccCCCC
Q 005864 273 PSCFEGMHGLSCIDISYNELLGLIP 297 (673)
Q Consensus 273 ~~~~~~~~~L~~l~l~~N~l~~~~~ 297 (673)
+..|..+++|+.|++++|++.+...
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCSRC 196 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTTST
T ss_pred HHHHhCCCCCCEEEeeCCceeCCcc
Confidence 7778888888888888888877643
No 342
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=4.9e-23 Score=208.51 Aligned_cols=195 Identities=21% Similarity=0.305 Sum_probs=104.0
Q ss_pred ccCCCCCcEEEccCcccccccccccCCCCCccEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhcccccc
Q 005864 60 LRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLH 139 (673)
Q Consensus 60 l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 139 (673)
+..+++|++|++++|.++.+. .+..+++|++|+|++|.+++..+ +..+++|++|+|++|.+++. ..+.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~------ 104 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIA------ 104 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGT------
T ss_pred HHHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhc------
Confidence 345556666666666665432 35555666666666666554433 55555555555555555532 2344
Q ss_pred ccccccccccccCCccccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCc
Q 005864 140 KLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQ 219 (673)
Q Consensus 140 ~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 219 (673)
.+++|++|++++|++++. + .+..+++|+.|++++|.+++..+ +..+++|+.|++++|+
T Consensus 105 ------------------~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 162 (308)
T 1h6u_A 105 ------------------GLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQ 162 (308)
T ss_dssp ------------------TCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred ------------------CCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCc
Confidence 445555555555555432 1 24555555555555555543222 5555555555555555
Q ss_pred CccCCchhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCccccccCccccccCCCccEEEccCccccC
Q 005864 220 FRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLG 294 (673)
Q Consensus 220 l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~ 294 (673)
+++..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++++
T Consensus 163 l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 163 VSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 554322 5555556666666665553322 5555666666666666655432 5556666666666666654
No 343
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=2.1e-22 Score=197.72 Aligned_cols=179 Identities=26% Similarity=0.282 Sum_probs=98.3
Q ss_pred CCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEEcc
Q 005864 17 NLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDIS 96 (673)
Q Consensus 17 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 96 (673)
+.++++++++.++ .+|..+. ++|+.|+|++|++++..+..|.++++|++|+|++|+++++.+..|..+++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3455556655555 3343333 355555555555555555555555555555555555555555555555555555555
Q ss_pred CCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccccCCccccCCCCCCEEEccCccccccC
Q 005864 97 HNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNL 176 (673)
Q Consensus 97 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 176 (673)
+|+++...+..|..+++|++|+|++| ++++..+..+..+++|++|+|++|++++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N------------------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGN------------------------QLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSS------------------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCC------------------------cCCCcChhHhccCCcccEEECcCCcCCccC
Confidence 55555444444444445555555444 444333334455555666666666655444
Q ss_pred CccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCcc
Q 005864 177 PRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRK 222 (673)
Q Consensus 177 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 222 (673)
+..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|++..
T Consensus 148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 4455566666666666666665555556666666666666666654
No 344
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.88 E-value=3.7e-22 Score=206.18 Aligned_cols=241 Identities=18% Similarity=0.110 Sum_probs=120.4
Q ss_pred CEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCccccc-ccccccCCCCCccE-EEcc
Q 005864 19 KGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTG-NISEVFGIYPNLTF-LDIS 96 (673)
Q Consensus 19 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~-L~L~ 96 (673)
++++.++++++ .+|..+. +++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+ +...+|.++++|.+ +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45666666666 4454442 466667777776665444566666666666666666533 44455666666554 4444
Q ss_pred CCccccccccCccccCCCcEEEcccCccCccCChhhhcccccccccccc-ccccccCCccccCCCCCCEEEccCcccccc
Q 005864 97 HNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSL-NQIVGEIPIELGNLKSLNYLVLNGNKLSGN 175 (673)
Q Consensus 97 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~ 175 (673)
+|+++.+.+..|..+++|++|++++|+++...+..+....++..|++.+ +.+....+..|..+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~--------------- 153 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS--------------- 153 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB---------------
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc---------------
Confidence 5666666566666666666666666666644444444444444555433 334333333333332
Q ss_pred CCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccC-CcCccCCchhhhcccCCCeEeecCCcCCCCCcccccC
Q 005864 176 LPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSN-NQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICN 254 (673)
Q Consensus 176 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~ 254 (673)
..++.|++++|.++ .++......++|+.|++++ |.++.+.+..|..+++|+.|++++|+|+...+..
T Consensus 154 --------~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--- 221 (350)
T 4ay9_X 154 --------FESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--- 221 (350)
T ss_dssp --------SSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---
T ss_pred --------hhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---
Confidence 13444555555554 2222222334455555542 3444333344555555555555555555222222
Q ss_pred CCcccEEEecCccccccCccccccCCCccEEEccCc
Q 005864 255 LESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYN 290 (673)
Q Consensus 255 l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N 290 (673)
+.+|+.|.+.++.--...| .+..+++|+.++++++
T Consensus 222 ~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 222 LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 2333333333332111223 2455555555555443
No 345
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.88 E-value=5.1e-22 Score=205.13 Aligned_cols=233 Identities=24% Similarity=0.188 Sum_probs=185.0
Q ss_pred CCccccCCCcccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCcccccc-CccccCCCCCcE-EEccCcccccc
Q 005864 2 NHLSGAIPPSVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQI-PRSLRNLASLNR-VHLEQNHLTGN 79 (673)
Q Consensus 2 n~i~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~l~~l~~L~~-L~L~~n~i~~~ 79 (673)
|+|+ .+|..+. +++++|+|++|+|+.+.+++|+++++|++|+|++|++.+.+ +.+|.++++|++ +.+..|+|+.+
T Consensus 19 ~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l 95 (350)
T 4ay9_X 19 SKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 95 (350)
T ss_dssp TTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred CCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc
Confidence 5677 7788774 68999999999999877788999999999999999986544 467899999876 66677999999
Q ss_pred cccccCCCCCccEEEccCCccccccccCccccCCCcEEEccc-CccCccCChhhhccc-cccccccccccccccCCcccc
Q 005864 80 ISEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSM-NNITGSIPPEIGKLY-QLHKLDFSLNQIVGEIPIELG 157 (673)
Q Consensus 80 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~-~L~~L~l~~n~i~~~~~~~l~ 157 (673)
.+..|..+++|++|++++|+++...+..+....++..|++.+ +.+..+.+..|..+. .++.|++++|+|+. ++....
T Consensus 96 ~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f 174 (350)
T 4ay9_X 96 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAF 174 (350)
T ss_dssp CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSS
T ss_pred CchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhc
Confidence 999999999999999999999988888888888899999966 678876677777765 68899999999984 444444
Q ss_pred CCCCCCEEEccC-ccccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCC-cCccCCchhhhcccCCC
Q 005864 158 NLKSLNYLVLNG-NKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNN-QFRKEFPVELEKLVQLS 235 (673)
Q Consensus 158 ~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~ 235 (673)
...+|++|++.+ |.++...++.|..+++|+.|++++|+|+...+..|. +|+.|.+.++ .++ ..| .+..+++|+
T Consensus 175 ~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~-~lP-~l~~l~~L~ 249 (350)
T 4ay9_X 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLK-KLP-TLEKLVALM 249 (350)
T ss_dssp TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCC-CCC-CTTTCCSCC
T ss_pred cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcC-cCC-CchhCcChh
Confidence 567899999975 777755556789999999999999999854444444 4455554443 343 444 467778888
Q ss_pred eEeecCCc
Q 005864 236 ELDLSHNF 243 (673)
Q Consensus 236 ~L~ls~N~ 243 (673)
.++++++.
T Consensus 250 ~l~l~~~~ 257 (350)
T 4ay9_X 250 EASLTYPS 257 (350)
T ss_dssp EEECSCHH
T ss_pred hCcCCCCc
Confidence 88887653
No 346
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=4.5e-23 Score=229.50 Aligned_cols=286 Identities=13% Similarity=0.085 Sum_probs=173.2
Q ss_pred CCCcccCCCCCCEEEeeCCccccC----CCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccc------
Q 005864 8 IPPSVGNFTNLKGLYLYSNSLSGS----VPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLT------ 77 (673)
Q Consensus 8 ~p~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~------ 77 (673)
++..+.++++|++|+|++|.+++. .+..+.++++|+.|+|++|.+.+ ++..+..+++|++|+++.+...
T Consensus 184 l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 262 (592)
T 3ogk_B 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEK 262 (592)
T ss_dssp HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTS
T ss_pred HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHH
Confidence 344556778888899988888733 33345678888888888888764 5566677777777777642211
Q ss_pred --------------------cccccccCCCCCccEEEccCCccccccc-cCccccCCCcEEEcccCccCc-cCChhhhcc
Q 005864 78 --------------------GNISEVFGIYPNLTFLDISHNNFYGEIW-SSWGKCQQLGTLNFSMNNITG-SIPPEIGKL 135 (673)
Q Consensus 78 --------------------~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l 135 (673)
...+..+..+++|++|+|++|.+++... ..+..+++|++|+++ +.+.. ..+..+..+
T Consensus 263 ~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~ 341 (592)
T 3ogk_B 263 YMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYC 341 (592)
T ss_dssp SSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHC
T ss_pred HHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhC
Confidence 1223344555666666666666543332 224556666666666 33322 222233456
Q ss_pred ccccccccc-----------cccccccCC-ccccCCCCCCEEEccCccccccCCccccC-CCCCCEEEeC----CCCCCC
Q 005864 136 YQLHKLDFS-----------LNQIVGEIP-IELGNLKSLNYLVLNGNKLSGNLPRVLGS-LSELEYLDLS----TNKLSG 198 (673)
Q Consensus 136 ~~L~~L~l~-----------~n~i~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~l~----~n~l~~ 198 (673)
++|++|+++ .|.+++... .....+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++
T Consensus 342 ~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITD 421 (592)
T ss_dssp TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred CCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccC
Confidence 667777776 244443211 11234667777777767776554444543 6777777774 556664
Q ss_pred c-----CCccccccccccEEEccCCc--CccCCchhhhc-ccCCCeEeecCCcCCCC-CcccccCCCcccEEEecCcccc
Q 005864 199 S-----IPETLGNLLKVHYLNLSNNQ--FRKEFPVELEK-LVQLSELDLSHNFLGGE-IPPQICNLESLEKLNVSHNNLS 269 (673)
Q Consensus 199 ~-----~~~~l~~l~~L~~L~l~~n~--l~~~~~~~~~~-l~~L~~L~ls~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~ 269 (673)
. ++..+..+++|+.|++++|. +++..+..+.. +++|+.|++++|.+++. ++..+..+++|++|+|++|.++
T Consensus 422 ~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred chHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence 2 22335567777777776433 55544444443 67788888888877652 3344566788888888888876
Q ss_pred cc-CccccccCCCccEEEccCccccCC
Q 005864 270 GL-IPSCFEGMHGLSCIDISYNELLGL 295 (673)
Q Consensus 270 ~~-~~~~~~~~~~L~~l~l~~N~l~~~ 295 (673)
+. .+..+..+++|++|++++|+++..
T Consensus 502 ~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 502 ERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 44 233445678888888888886654
No 347
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=6.5e-21 Score=181.42 Aligned_cols=131 Identities=27% Similarity=0.255 Sum_probs=49.6
Q ss_pred CCcEEEccCcccccccccccCCCCCccEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccc
Q 005864 65 SLNRVHLEQNHLTGNISEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFS 144 (673)
Q Consensus 65 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 144 (673)
+|++|+|++|+++++.+..|..+++|++|+|++|+++.+.+..|..+++|++|+|++|+++...+..|..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 33344444443333333333334444444444444333333333333333444444333333222233333333333333
Q ss_pred cccccccCCccccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCC
Q 005864 145 LNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNK 195 (673)
Q Consensus 145 ~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 195 (673)
+|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 333332222223333444444444444443333333334444444444443
No 348
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=7.4e-21 Score=181.00 Aligned_cols=178 Identities=21% Similarity=0.187 Sum_probs=98.3
Q ss_pred cEEEccCcccccccccccCCCCCccEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccc
Q 005864 67 NRVHLEQNHLTGNISEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLN 146 (673)
Q Consensus 67 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 146 (673)
+.++++++.++.++... .++|++|+|++|.++++.+..|..+++|++|++++|+++...+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 45666666666554322 346777777777776666666666667777777766666554445555666666666666
Q ss_pred cccccCCccccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCch
Q 005864 147 QIVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPV 226 (673)
Q Consensus 147 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 226 (673)
++++..+..+..+++|++|++++|++++..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 6554444445555555555555555554444445555555555555555554444444555555555555554432
Q ss_pred hhhcccCCCeEeecCCcCCCCCcccccC
Q 005864 227 ELEKLVQLSELDLSHNFLGGEIPPQICN 254 (673)
Q Consensus 227 ~~~~l~~L~~L~ls~N~l~~~~~~~~~~ 254 (673)
.+++|+.|+++.|.+++.+|..++.
T Consensus 163 ---~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 163 ---TCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp ---CTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred ---CCCCHHHHHHHHHhCCceeeccCcc
Confidence 1224444444445444444444443
No 349
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=5.7e-21 Score=207.31 Aligned_cols=188 Identities=23% Similarity=0.330 Sum_probs=118.4
Q ss_pred CCcEEEccCcccccccccccCCCCCccEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccc
Q 005864 65 SLNRVHLEQNHLTGNISEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFS 144 (673)
Q Consensus 65 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 144 (673)
+|+.|+|++|+|++++... +++|++|+|++|.|+.++ ..+++|+.|+|++|.|++ +|. +.+ +|+.|+|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQNALISLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 5666666666666544333 255666666666665332 334666666666666664 444 433 66666666
Q ss_pred cccccccCCccccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCC
Q 005864 145 LNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEF 224 (673)
Q Consensus 145 ~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 224 (673)
+|.+++ +|. .+++|+.|+|++|.+++ +|. .+++|+.|+|++|.+++ +|. |. ++|+.|+|++|+|+. +
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~-l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLES-L 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSS-C
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCc-h
Confidence 666664 443 45677777777777764 343 45677777777777764 555 44 677777777777773 3
Q ss_pred chhhhcccCC-------CeEeecCCcCCCCCcccccCCCcccEEEecCccccccCccccccCC
Q 005864 225 PVELEKLVQL-------SELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMH 280 (673)
Q Consensus 225 ~~~~~~l~~L-------~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 280 (673)
|. +.. +| +.|+|++|.|+ .+|..+..+++|+.|+|++|++++..|..+..+.
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 33 443 55 78888888887 5677777788888888888888877777666543
No 350
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=5.5e-21 Score=183.22 Aligned_cols=157 Identities=20% Similarity=0.231 Sum_probs=126.3
Q ss_pred cccccccccccccCCccccCCCCCCEEEccCccccccCC-ccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccC
Q 005864 139 HKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLP-RVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSN 217 (673)
Q Consensus 139 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 217 (673)
+.+++++|.++ .+|..+. +.++.|+|++|++++..+ ..|..+++|+.|+|++|.+++..+..|..+++|+.|+|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 35666666665 3454443 456788888888886644 4577888888888888888877777888888888888888
Q ss_pred CcCccCCchhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCccccccCccccccCCCccEEEccCccccCCCC
Q 005864 218 NQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLGLIP 297 (673)
Q Consensus 218 n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~ 297 (673)
|++++..+..|..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..|..|..+++|+.|++++|++.+..+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 88888778788888889999999999887778888889999999999999998888889999999999999999988766
Q ss_pred C
Q 005864 298 N 298 (673)
Q Consensus 298 ~ 298 (673)
-
T Consensus 171 l 171 (220)
T 2v70_A 171 L 171 (220)
T ss_dssp G
T ss_pred h
Confidence 4
No 351
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=7.2e-21 Score=182.41 Aligned_cols=156 Identities=21% Similarity=0.270 Sum_probs=118.9
Q ss_pred cccccccccccccCCccccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCC
Q 005864 139 HKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNN 218 (673)
Q Consensus 139 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 218 (673)
+.++++++.++ .+|..+. ++|+.|++++|++++..+..|..+++|+.|+|++|.+++..|..|..+++|+.|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 34555666555 4444443 57777777777777666667777778888888888877666777778888888888888
Q ss_pred cCccCCchhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCccccccCccccccCCCccEEEccCccccCCCC
Q 005864 219 QFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLGLIP 297 (673)
Q Consensus 219 ~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~ 297 (673)
+|+...+..|..+++|+.|+|++|.+++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|++++|++.+...
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 8887666667778888888888888887777788888888888888888888877778888888888888888877554
No 352
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=1.6e-22 Score=225.08 Aligned_cols=178 Identities=18% Similarity=0.092 Sum_probs=112.2
Q ss_pred ccCCCCCCEEEeeCCccccCCC----ccccCCCCCCEEEcccCccc----cccCccccCCCCCcEEEccCcccccccccc
Q 005864 12 VGNFTNLKGLYLYSNSLSGSVP----GEIGNLMQLTNLEIDNNQLF----GQIPRSLRNLASLNRVHLEQNHLTGNISEV 83 (673)
Q Consensus 12 ~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~i~----~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~ 83 (673)
..++++|++|+|++|.+++... ..+..+++|++|++++|.++ ...+..+.++++|++|+|++|.+.++ +..
T Consensus 160 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l-~~~ 238 (592)
T 3ogk_B 160 VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL-VGF 238 (592)
T ss_dssp HHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG-HHH
T ss_pred HhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH-HHH
Confidence 3578999999999999886633 34567899999999999997 33445567899999999999999874 477
Q ss_pred cCCCCCccEEEccCCccc---cccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccccCC-ccccCC
Q 005864 84 FGIYPNLTFLDISHNNFY---GEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIP-IELGNL 159 (673)
Q Consensus 84 ~~~l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~-~~l~~l 159 (673)
+..+++|++|+++.+... ......+..+++|+.|+++++... .++..+..+++|++|++++|.+++... ..+..+
T Consensus 239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~ 317 (592)
T 3ogk_B 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKC 317 (592)
T ss_dssp HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTC
T ss_pred HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhC
Confidence 888899999999853222 122234455556666666554332 344455556666666666665443222 223445
Q ss_pred CCCCEEEccCccccc-cCCccccCCCCCCEEEeC
Q 005864 160 KSLNYLVLNGNKLSG-NLPRVLGSLSELEYLDLS 192 (673)
Q Consensus 160 ~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~ 192 (673)
++|+.|+++ +.+.+ .++..+..+++|++|+++
T Consensus 318 ~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 318 PNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp TTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred cCCCEEecc-CccCHHHHHHHHHhCCCCCEEEee
Confidence 555555555 22221 122222334455555555
No 353
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=2.7e-20 Score=201.99 Aligned_cols=189 Identities=24% Similarity=0.315 Sum_probs=134.8
Q ss_pred CCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEEccCCccccccccCccccCCCcEEEcc
Q 005864 41 QLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFS 120 (673)
Q Consensus 41 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 120 (673)
+|+.|+|++|++++ +|..+ +++|++|+|++|+|+.++ ..+++|++|+|++|+|++++. +.+ +|+.|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch--hhc--CCCEEECC
Confidence 67777777777764 45444 266777777777777544 346777777777777776333 443 77778888
Q ss_pred cCccCccCChhhhccccccccccccccccccCCccccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcC
Q 005864 121 MNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSI 200 (673)
Q Consensus 121 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 200 (673)
+|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|+|++|++++ +|. |. ++|+.|+|++|.|+ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 777775 444 56778888888888774 454 46788888888888885 555 55 78888888888887 55
Q ss_pred Cccccccccc-------cEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccCCCc
Q 005864 201 PETLGNLLKV-------HYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNLES 257 (673)
Q Consensus 201 ~~~l~~l~~L-------~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~ 257 (673)
|. +.. +| +.|+|++|+|+. +|..+..+++|+.|+|++|++++.+|..+..+..
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 65 544 66 888999998884 6777777888999999999988888877776543
No 354
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=1.3e-20 Score=188.84 Aligned_cols=172 Identities=25% Similarity=0.333 Sum_probs=84.2
Q ss_pred ccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEEccCCccccccccCccccCCCc
Q 005864 36 IGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLG 115 (673)
Q Consensus 36 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 115 (673)
+..+++|+.|++++|.+... + .+..+++|++|+|++|+++++.+ +..+++|++|+|++|.+++. ..+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCC
Confidence 34555666666666666532 2 35556666666666666665443 55666666666666665542 2255555555
Q ss_pred EEEcccCccCccCChhhhccccccccccccccccccCCccccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCC
Q 005864 116 TLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNK 195 (673)
Q Consensus 116 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 195 (673)
+|++++|++++. ..+..+++|+.|++++|++++. ..+..+++|+.|++++|++++..+ +..+++|+.|++++|.
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 555555555532 3344444444444444444422 234444444444444444443222 4444444444444444
Q ss_pred CCCcCCccccccccccEEEccCCcCc
Q 005864 196 LSGSIPETLGNLLKVHYLNLSNNQFR 221 (673)
Q Consensus 196 l~~~~~~~l~~l~~L~~L~l~~n~l~ 221 (673)
+++ ++ .+..+++|+.|++++|+++
T Consensus 190 i~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 190 ISD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred CCC-Ch-hhccCCCCCEEECcCCccc
Confidence 432 11 2333444444444444433
No 355
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=2.5e-20 Score=204.71 Aligned_cols=190 Identities=24% Similarity=0.303 Sum_probs=111.5
Q ss_pred CCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEEccC
Q 005864 18 LKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDISH 97 (673)
Q Consensus 18 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 97 (673)
+..+.++.+.+++..+ +..+++|+.|++++|.|... + .+..+++|+.|+|++|+|.++++ +..+++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 3344445555543322 44555666666666665532 2 35566666666666666665443 55666666666666
Q ss_pred CccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccccCCccccCCCCCCEEEccCccccccCC
Q 005864 98 NNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLP 177 (673)
Q Consensus 98 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 177 (673)
|.+++. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..|
T Consensus 97 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 97 NKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp SCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 666542 2455666666666666666642 3456666666666666666543 456666666666666666665443
Q ss_pred ccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccC
Q 005864 178 RVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKE 223 (673)
Q Consensus 178 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 223 (673)
+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++.+.
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred --hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 66666666666666666642 2466666666777776666653
No 356
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=2.1e-20 Score=187.49 Aligned_cols=174 Identities=24% Similarity=0.327 Sum_probs=155.1
Q ss_pred cccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCc
Q 005864 11 SVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNL 90 (673)
Q Consensus 11 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 90 (673)
.++.+++|++|++++|.+++. + .+..+++|++|+|++|++++..+ +..+++|+.|+|++|+++++. .+..+++|
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L 114 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLKKL 114 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG--GGTTCTTC
T ss_pred chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh--hhccCCCC
Confidence 456789999999999999954 3 48999999999999999986544 999999999999999999754 48999999
Q ss_pred cEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccccCCccccCCCCCCEEEccCc
Q 005864 91 TFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGN 170 (673)
Q Consensus 91 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n 170 (673)
++|+|++|.+++. ..+..+++|+.|++++|++++. ..+..+++|+.|++++|++++..+ +..+++|+.|++++|
T Consensus 115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence 9999999999865 5788999999999999999965 689999999999999999986544 889999999999999
Q ss_pred cccccCCccccCCCCCCEEEeCCCCCCC
Q 005864 171 KLSGNLPRVLGSLSELEYLDLSTNKLSG 198 (673)
Q Consensus 171 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 198 (673)
.+++. + .+..+++|+.|++++|.++.
T Consensus 189 ~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 189 HISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred cCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 99954 3 48999999999999999984
No 357
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=2.4e-20 Score=204.77 Aligned_cols=171 Identities=26% Similarity=0.300 Sum_probs=77.8
Q ss_pred cCCCCCcEEEccCcccccccccccCCCCCccEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhccccccc
Q 005864 61 RNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHK 140 (673)
Q Consensus 61 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 140 (673)
..+++|+.|+|++|.|..+. .|..+++|+.|+|++|.+++..+ +..+++|+.|+|++|.+++. ..+..+++|+.
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCE
Confidence 34444444445444444332 24444445555555444443332 44444455555555444421 13444444555
Q ss_pred cccccccccccCCccccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcC
Q 005864 141 LDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQF 220 (673)
Q Consensus 141 L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 220 (673)
|+|++|.+.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|+|
T Consensus 114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 55555444421 2344444455555555444432 334444445555555444443322 44444455555555544
Q ss_pred ccCCchhhhcccCCCeEeecCCcCC
Q 005864 221 RKEFPVELEKLVQLSELDLSHNFLG 245 (673)
Q Consensus 221 ~~~~~~~~~~l~~L~~L~ls~N~l~ 245 (673)
++. ..+..+++|+.|+|++|++.
T Consensus 188 ~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 188 SDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CBC--GGGTTCTTCSEEECCSEEEE
T ss_pred CCC--hHHccCCCCCEEEccCCcCc
Confidence 432 23444444455555544444
No 358
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=4.7e-20 Score=191.13 Aligned_cols=179 Identities=24% Similarity=0.204 Sum_probs=123.8
Q ss_pred cEEEcccCccCccCChhhhccccccccccccccccccCCcccc-CCCCCCEEEccCccccccCCccccCCCCCCEEEeCC
Q 005864 115 GTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELG-NLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLST 193 (673)
Q Consensus 115 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 193 (673)
+.+++++++++. +|..+. +.++.|+|++|++++..+..+. .+++|+.|+|++|+|++..+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 456666666663 443332 2466677777777665555565 677777777777777766666677777777777777
Q ss_pred CCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccc---cCCCcccEEEecCccccc
Q 005864 194 NKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQI---CNLESLEKLNVSHNNLSG 270 (673)
Q Consensus 194 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~---~~l~~L~~L~l~~N~l~~ 270 (673)
|.+++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|.|++..+..| ..+++|+.|+|++|+|++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 77776656667777777777777777777777777777777777777777775444444 457788888888888887
Q ss_pred cCccccccCCCc--cEEEccCccccCCC
Q 005864 271 LIPSCFEGMHGL--SCIDISYNELLGLI 296 (673)
Q Consensus 271 ~~~~~~~~~~~L--~~l~l~~N~l~~~~ 296 (673)
+.+..+..++.+ +.|+|++|++.+..
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred cCHHHhhhccHhhcceEEecCCCccCCc
Confidence 766777777763 77888888887654
No 359
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.81 E-value=9.1e-21 Score=194.02 Aligned_cols=271 Identities=11% Similarity=0.063 Sum_probs=170.8
Q ss_pred ccCCCcccC--CCCCCEEEeeCCccccCCCccccC-CCCCCEEEcccCccc--cccCccccCCCCCcEEEccCccccccc
Q 005864 6 GAIPPSVGN--FTNLKGLYLYSNSLSGSVPGEIGN-LMQLTNLEIDNNQLF--GQIPRSLRNLASLNRVHLEQNHLTGNI 80 (673)
Q Consensus 6 ~~~p~~~~~--l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~i~--~~~~~~l~~l~~L~~L~L~~n~i~~~~ 80 (673)
|+++..+.. +.+|+.|.++++- .......+.. +++|+.|||++|+|. ......+ +.+..+.+..| .++
T Consensus 13 g~l~~~l~~~~~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~---~I~ 85 (329)
T 3sb4_A 13 GTLISMMTEEEANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMAN---FVP 85 (329)
T ss_dssp TCGGGGSCHHHHHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTT---EEC
T ss_pred CcHHhhccchhhCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCccccc---ccccccccccc---ccC
Confidence 334444433 6678899988752 2122233444 788999999999887 2221111 22333444444 233
Q ss_pred ccccCC--------CCCccEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccc----
Q 005864 81 SEVFGI--------YPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQI---- 148 (673)
Q Consensus 81 ~~~~~~--------l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i---- 148 (673)
..+|.+ +++|+.|+|.+ .++.+...+|.+|++|+.|++.+|.+..+.+.+|.++.++..+.+..+..
T Consensus 86 ~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~ 164 (329)
T 3sb4_A 86 AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFK 164 (329)
T ss_dssp TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTS
T ss_pred HHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcc
Confidence 455555 66666666666 55556666666666666666666666555555665555555554444221
Q ss_pred cccCCccccCCC--------------------------CCCEEEccCccccccCCccc-cCCCCCCEEEeCCCCCCCcCC
Q 005864 149 VGEIPIELGNLK--------------------------SLNYLVLNGNKLSGNLPRVL-GSLSELEYLDLSTNKLSGSIP 201 (673)
Q Consensus 149 ~~~~~~~l~~l~--------------------------~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~ 201 (673)
.......|..+. ++..+.+.++-.. .....+ ..+++|+.|+|++|.++...+
T Consensus 165 ~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~ 243 (329)
T 3sb4_A 165 NRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPD 243 (329)
T ss_dssp TTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECT
T ss_pred ccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecH
Confidence 111222233333 3444444433211 111111 236889999999888886667
Q ss_pred ccccccccccEEEccCCcCccCCchhhhcccCCC-eEeecCCcCCCCCcccccCCCcccEEEecCccccccCccccccCC
Q 005864 202 ETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLS-ELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMH 280 (673)
Q Consensus 202 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 280 (673)
.+|.++++|+.|++.+| ++.+.+..|.++.+|+ .|++.+ .++.+.+.+|.++++|+.+++++|+++.+.+.+|.+++
T Consensus 244 ~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~ 321 (329)
T 3sb4_A 244 FTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGV 321 (329)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTC
T ss_pred hhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCc
Confidence 78888889999999887 7777788888888898 999988 67756678888899999999989999888888899999
Q ss_pred CccEEEc
Q 005864 281 GLSCIDI 287 (673)
Q Consensus 281 ~L~~l~l 287 (673)
+|+.++.
T Consensus 322 ~L~~ly~ 328 (329)
T 3sb4_A 322 PSKLIYK 328 (329)
T ss_dssp CCCEEEC
T ss_pred chhhhcc
Confidence 8888763
No 360
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.81 E-value=1.6e-21 Score=217.10 Aligned_cols=227 Identities=13% Similarity=0.115 Sum_probs=112.3
Q ss_pred cCCCCCCEEEeeCCccccCCCcccc-CCCCCCEEEcccC-ccccc-cCccccCCCCCcEEEccCccccccccccc----C
Q 005864 13 GNFTNLKGLYLYSNSLSGSVPGEIG-NLMQLTNLEIDNN-QLFGQ-IPRSLRNLASLNRVHLEQNHLTGNISEVF----G 85 (673)
Q Consensus 13 ~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n-~i~~~-~~~~l~~l~~L~~L~L~~n~i~~~~~~~~----~ 85 (673)
..+++|++|+|++|.+++..+..+. .+++|++|+|++| .++.. .+..+.++++|++|+|++|.+++.....+ .
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 3456666666666666655444454 4666666666666 44322 22333356666666666666554333222 2
Q ss_pred CCCCccEEEccCCc--ccccc-ccCccccCCCcEEEcccC----------------------------------------
Q 005864 86 IYPNLTFLDISHNN--FYGEI-WSSWGKCQQLGTLNFSMN---------------------------------------- 122 (673)
Q Consensus 86 ~l~~L~~L~L~~n~--i~~~~-~~~~~~l~~L~~L~L~~n---------------------------------------- 122 (673)
.+++|++|+|++|. +.... ...+..+++|++|++++|
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 44566666666554 21110 011123355555555544
Q ss_pred ----------ccCc----cCChhhhccccccccccccccccccC-CccccCCCCCCEEEccCcccccc-CCccccCCCCC
Q 005864 123 ----------NITG----SIPPEIGKLYQLHKLDFSLNQIVGEI-PIELGNLKSLNYLVLNGNKLSGN-LPRVLGSLSEL 186 (673)
Q Consensus 123 ----------~l~~----~~~~~l~~l~~L~~L~l~~n~i~~~~-~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L 186 (673)
.+.. .++..+..+++|++|++++|.+++.. ...+..+++|++|++++| +++. ++.....+++|
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L 340 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDL 340 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTC
T ss_pred hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCC
Confidence 1111 12222335678888888888765432 222456677777777776 4322 11122345666
Q ss_pred CEEEeC---------CCCCCCcCCcccc-ccccccEEEccCCcCccCCchhhh-cccCCCeEeec
Q 005864 187 EYLDLS---------TNKLSGSIPETLG-NLLKVHYLNLSNNQFRKEFPVELE-KLVQLSELDLS 240 (673)
Q Consensus 187 ~~L~l~---------~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~ls 240 (673)
+.|++. .+.+++.....+. .+++|+.|.++.|.+++..+..+. .+++|+.|+++
T Consensus 341 ~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 341 RELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp CEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred CEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 666662 2333322112222 245555555555555543333333 34555555555
No 361
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=2.2e-19 Score=171.95 Aligned_cols=151 Identities=23% Similarity=0.272 Sum_probs=85.1
Q ss_pred EEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEEccCCccccccccCccccCCCcEEEcccCc
Q 005864 44 NLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNN 123 (673)
Q Consensus 44 ~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 123 (673)
.+++++++++ .+|..+. ++|+.|+|++|+|+.+.+..|..+++|++|+|++|.++++.+..|.++++|++|+|++|.
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 4444444444 2333222 345555555555555444455555555555555555555555555555555555555555
Q ss_pred cCccCChhhhccccccccccccccccccCCccccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCC
Q 005864 124 ITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLS 197 (673)
Q Consensus 124 l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 197 (673)
|+.+.+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 55444444555566666666666665555556666666666666666666555556666667777777777664
No 362
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=3e-19 Score=172.29 Aligned_cols=156 Identities=24% Similarity=0.287 Sum_probs=118.6
Q ss_pred ccccccccccccccCCccccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccC
Q 005864 138 LHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSN 217 (673)
Q Consensus 138 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 217 (673)
-+.++++++.++ .+|..+. ++|++|+|++|.+++..+..|..+++|+.|+|++|.++...+..|..+++|+.|+|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 345666666665 4454443 6777788888887777677777778888888888887755556677788888888888
Q ss_pred CcCccCCchhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCccccccCccccccCCCccEEEccCccccCCCC
Q 005864 218 NQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLGLIP 297 (673)
Q Consensus 218 n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~ 297 (673)
|++++..+..|..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|+|++..+..|..+++|+.|++++|++.+.++
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 8888776777778888888888888887 677778888888888888888887777778888888888888888887665
No 363
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=1.9e-19 Score=186.54 Aligned_cols=176 Identities=26% Similarity=0.259 Sum_probs=82.5
Q ss_pred CEEEcccCccccccCccccCCCCCcEEEccCcccccccccccC-CCCCccEEEccCCccccccccCccccCCCcEEEccc
Q 005864 43 TNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFG-IYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSM 121 (673)
Q Consensus 43 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 121 (673)
+.+++++++++ .+|..+. +.++.|+|++|+|+++.+..|. .+++|++|+|++|+|+.+.+..|.++++|+.|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 45555555555 3343322 2355555555555555544444 455555555555555544444444444444444444
Q ss_pred CccCccCChhhhccccccccccccccccccCCccccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCC
Q 005864 122 NNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIP 201 (673)
Q Consensus 122 n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 201 (673)
|+|+... +..|..+++|+.|+|++|+++...+..|..+++|+.|+|++|.+++..+
T Consensus 98 N~l~~~~------------------------~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 153 (361)
T 2xot_A 98 NHLHTLD------------------------EFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV 153 (361)
T ss_dssp SCCCEEC------------------------TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG
T ss_pred CcCCcCC------------------------HHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH
Confidence 4444333 3334444444444444444444444444444555555555555443222
Q ss_pred ccc---cccccccEEEccCCcCccCCchhhhcccC--CCeEeecCCcCC
Q 005864 202 ETL---GNLLKVHYLNLSNNQFRKEFPVELEKLVQ--LSELDLSHNFLG 245 (673)
Q Consensus 202 ~~l---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~ls~N~l~ 245 (673)
..| ..+++|+.|+|++|+|++..+..+..++. |+.|+|++|++.
T Consensus 154 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp GGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred HHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 222 33445555555555555444444444443 244555555443
No 364
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.80 E-value=3.6e-21 Score=214.27 Aligned_cols=290 Identities=18% Similarity=0.155 Sum_probs=178.0
Q ss_pred CCccccCCCccc-CCCCCCEEEeeCC-ccccC-CCccccCCCCCCEEEcccCccccccCcccc----CCCCCcEEEccCc
Q 005864 2 NHLSGAIPPSVG-NFTNLKGLYLYSN-SLSGS-VPGEIGNLMQLTNLEIDNNQLFGQIPRSLR----NLASLNRVHLEQN 74 (673)
Q Consensus 2 n~i~~~~p~~~~-~l~~L~~L~L~~n-~i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~----~l~~L~~L~L~~n 74 (673)
|.+++..+..+. .+++|++|+|++| .++.. .+..+.++++|++|+|++|.+++..+..+. .+++|++|++++|
T Consensus 115 ~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~ 194 (594)
T 2p1m_B 115 MVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCL 194 (594)
T ss_dssp CBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTC
T ss_pred cEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEeccc
Confidence 345555555554 5778888888877 55532 233344677888888888877654443333 5567777777777
Q ss_pred c--ccc-ccccccCCCCCccEEEccCCc--------------------------------------------------cc
Q 005864 75 H--LTG-NISEVFGIYPNLTFLDISHNN--------------------------------------------------FY 101 (673)
Q Consensus 75 ~--i~~-~~~~~~~~l~~L~~L~L~~n~--------------------------------------------------i~ 101 (673)
. ++. .....+..+++|++|+|++|. +.
T Consensus 195 ~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~ 274 (594)
T 2p1m_B 195 ASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFW 274 (594)
T ss_dssp CSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCB
T ss_pred CCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCc
Confidence 5 221 111222345677777776651 10
Q ss_pred cc----cccCccccCCCcEEEcccCccCccCC-hhhhccccccccccccccccccC-CccccCCCCCCEEEcc-------
Q 005864 102 GE----IWSSWGKCQQLGTLNFSMNNITGSIP-PEIGKLYQLHKLDFSLNQIVGEI-PIELGNLKSLNYLVLN------- 168 (673)
Q Consensus 102 ~~----~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~-~~~l~~l~~L~~L~L~------- 168 (673)
.. .+..+..+++|++|+|++|.++.... ..+..+++|++|++++| +.... +.....+++|++|++.
T Consensus 275 ~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~ 353 (594)
T 2p1m_B 275 DAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVM 353 (594)
T ss_dssp TCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCS
T ss_pred ccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCccccc
Confidence 01 11112256899999999999774322 23557889999999988 44222 2222347888888883
Q ss_pred --CccccccCCcccc-CCCCCCEEEeCCCCCCCcCCcccc-ccccccEEEcc--C----CcCccCC-----chhhhcccC
Q 005864 169 --GNKLSGNLPRVLG-SLSELEYLDLSTNKLSGSIPETLG-NLLKVHYLNLS--N----NQFRKEF-----PVELEKLVQ 233 (673)
Q Consensus 169 --~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~--~----n~l~~~~-----~~~~~~l~~ 233 (673)
.+.+++.....+. .+++|+.|.++.|.+++..+..+. .+++|+.|+++ + |.++... +..+..+++
T Consensus 354 ~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 433 (594)
T 2p1m_B 354 EPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKD 433 (594)
T ss_dssp SCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTT
T ss_pred ccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCC
Confidence 3455533222232 467888888877777755444454 47788888887 3 4555321 122566677
Q ss_pred CCeEeecCCcCCCCCcccccC-CCcccEEEecCccccccCcccc-ccCCCccEEEccCcccc
Q 005864 234 LSELDLSHNFLGGEIPPQICN-LESLEKLNVSHNNLSGLIPSCF-EGMHGLSCIDISYNELL 293 (673)
Q Consensus 234 L~~L~ls~N~l~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~-~~~~~L~~l~l~~N~l~ 293 (673)
|+.|++++ .+++..+..+.. +++|+.|+|++|.+++.....+ ..+++|+.|++++|+++
T Consensus 434 L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 434 LRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494 (594)
T ss_dssp CCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred ccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence 88888866 555544445554 6778888888887765544444 56777888888888774
No 365
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=4.4e-19 Score=169.93 Aligned_cols=152 Identities=19% Similarity=0.236 Sum_probs=91.4
Q ss_pred EEEcccCccccccCccccCCCCCcEEEccCccccccc-ccccCCCCCccEEEccCCccccccccCccccCCCcEEEcccC
Q 005864 44 NLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNI-SEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMN 122 (673)
Q Consensus 44 ~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 122 (673)
.+++++|.++ .+|..+. ..+++|+|++|+|+++. ...|..+++|++|+|++|.|+++.+..|.++++|++|+|++|
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 4555555554 2333222 23445555555555442 234555555555555555555555555566666666666666
Q ss_pred ccCccCChhhhccccccccccccccccccCCccccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCC
Q 005864 123 NITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSG 198 (673)
Q Consensus 123 ~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 198 (673)
.+++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|+.|++++|.+..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 6665555556666666666666666666666666677777777777777776666677777777777777777764
No 366
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.79 E-value=2.1e-19 Score=176.67 Aligned_cols=142 Identities=18% Similarity=0.222 Sum_probs=109.4
Q ss_pred hcCCCccceeccCCcEEEEEEEe-CCCCE--EEEEeeccchhh---------------------hhHHHHHHHHHHHHHh
Q 005864 401 TKNFDAEQCIGIGGQASVYRGEL-PSGEV--VAVKKFHSLLLS---------------------EISVQREFLNEIKALT 456 (673)
Q Consensus 401 ~~~~~~~~~ig~G~~g~vy~~~~-~~~~~--vavK~~~~~~~~---------------------~~~~~~~~~~e~~~l~ 456 (673)
..-|++.+.||+|+||.||+|.. .+|+. ||||+++..... .......+.+|+..+.
T Consensus 46 ~~~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 125 (258)
T 1zth_A 46 GYITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLE 125 (258)
T ss_dssp TSEEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHH
T ss_pred CCchhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHH
Confidence 33467889999999999999987 68999 999987543211 0112246889999999
Q ss_pred ccCCCcc--cceeeeeecCCeeeEEEecccC-C----ChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHh-hcCCCCe
Q 005864 457 EIRHRNI--VKFYGFCSHPRHSFLVYECLER-G----SLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMH-HDCFPPI 528 (673)
Q Consensus 457 ~l~h~ni--v~l~~~~~~~~~~~lv~e~~~~-g----sL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH-~~~~~~i 528 (673)
+++|+++ ..++++ +..++||||+.+ | +|.++... .++..+..++.|++.|+.||| +. +|
T Consensus 126 ~l~~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~------~~~~~~~~i~~qi~~~l~~lH~~~---gi 192 (258)
T 1zth_A 126 RAKEAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE------LKELDVEGIFNDVVENVKRLYQEA---EL 192 (258)
T ss_dssp HHHHTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG------GGGSCHHHHHHHHHHHHHHHHHTS---CE
T ss_pred HHHhCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc------cChHHHHHHHHHHHHHHHHHHHHC---CE
Confidence 9988864 334432 356899999953 4 66665432 234567789999999999999 88 99
Q ss_pred EEecCCCCCeEeCCCCceEEecccceeec
Q 005864 529 VHRDISSKNVLLSSEYEARVSDFGIAKFL 557 (673)
Q Consensus 529 vH~dlk~~Nill~~~~~~kl~Dfg~~~~~ 557 (673)
+||||||+|||+++ .++|+|||+|...
T Consensus 193 vHrDlkp~NILl~~--~~~liDFG~a~~~ 219 (258)
T 1zth_A 193 VHADLSEYNIMYID--KVYFIDMGQAVTL 219 (258)
T ss_dssp ECSSCSTTSEEESS--SEEECCCTTCEET
T ss_pred EeCCCCHHHEEEcC--cEEEEECcccccC
Confidence 99999999999998 9999999999865
No 367
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.79 E-value=2.8e-20 Score=183.44 Aligned_cols=169 Identities=21% Similarity=0.262 Sum_probs=107.5
Q ss_pred CCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEE
Q 005864 14 NFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFL 93 (673)
Q Consensus 14 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 93 (673)
++.++..+++++|.+++.. .+..+++|++|++++|+++. ++ .+..+++|+.|+|++|+|+++.+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 4566777777788777433 56777888888888887773 34 57777888888888888776655 7777778888
Q ss_pred EccCCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccccCCccccCCCCCCEEEccCcccc
Q 005864 94 DISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLS 173 (673)
Q Consensus 94 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~ 173 (673)
+|++|++++... +.. ++|+.|++++|++++. ..+..+++|+.|++++|++++. + .+..+++|+.|++++|+++
T Consensus 91 ~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 887777765432 222 6677777777766643 2455566666666666665532 2 4555555555555555555
Q ss_pred ccCCccccCCCCCCEEEeCCCCCC
Q 005864 174 GNLPRVLGSLSELEYLDLSTNKLS 197 (673)
Q Consensus 174 ~~~~~~l~~l~~L~~L~l~~n~l~ 197 (673)
+. ..+..+++|+.|++++|.++
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEE
T ss_pred ch--HHhccCCCCCEEeCCCCccc
Confidence 33 34555555555555555554
No 368
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=1.2e-18 Score=168.09 Aligned_cols=134 Identities=23% Similarity=0.230 Sum_probs=75.1
Q ss_pred CCCcEEEccCcccccccccccCCCCCccEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhcccccccccc
Q 005864 64 ASLNRVHLEQNHLTGNISEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDF 143 (673)
Q Consensus 64 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 143 (673)
++|++|+|++|+|+++.+..|..+++|++|+|++|+++.+.+..|..+++|+.|+|++|+|+...+..|..+++|++|+|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 44445555555544444444444555555555555554444444455555555555555555444444555555555555
Q ss_pred ccccccccCCccccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCC
Q 005864 144 SLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSG 198 (673)
Q Consensus 144 ~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 198 (673)
++|+++ .+|..+..+++|+.|+|++|++++..+..|..+++|+.|++++|.+..
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 555555 445555666666666666666665555556666777777777776653
No 369
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.78 E-value=6.2e-18 Score=176.51 Aligned_cols=267 Identities=12% Similarity=0.100 Sum_probs=219.3
Q ss_pred CCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEE
Q 005864 14 NFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFL 93 (673)
Q Consensus 14 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 93 (673)
.+..++.+.+.+ .++.+...+|.++ +|+.+.+.++ ++.+...+|.++ +|+.+.|.. .+..+...+|.++++|+.+
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 346788888876 4555778888885 7999999877 776777888885 699999986 7888888899999999999
Q ss_pred EccCCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccccCCccccCCCCCCEEEccCcccc
Q 005864 94 DISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLS 173 (673)
Q Consensus 94 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~ 173 (673)
+|++|+++.+...+|. +.+|+.+.|..+ ++.+...+|.++++|+.+++..| ++.+...+|.. .+|+.+.+. +.++
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~ 260 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT 260 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc
Confidence 9999999888888887 589999999854 77677888999999999999876 55566777777 789999995 4566
Q ss_pred ccCCccccCCCCCCEEEeCCCCCC-----CcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCC
Q 005864 174 GNLPRVLGSLSELEYLDLSTNKLS-----GSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEI 248 (673)
Q Consensus 174 ~~~~~~l~~l~~L~~L~l~~n~l~-----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~ 248 (673)
.+...+|.++++|+.+.+.+|.+. ...+.+|..+++|+.+++. +.++.+....|.++.+|+.++|..| ++...
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence 577788999999999999887764 3566789999999999999 4588788889999999999999665 66566
Q ss_pred cccccCCCcccEEEecCccccccCccccccCC-CccEEEccCcccc
Q 005864 249 PPQICNLESLEKLNVSHNNLSGLIPSCFEGMH-GLSCIDISYNELL 293 (673)
Q Consensus 249 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~L~~l~l~~N~l~ 293 (673)
..+|.++ +|+.+++++|.+....+..|.+++ .+..|++..+.+.
T Consensus 339 ~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred HHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 7789998 999999999998888888888885 7889988877654
No 370
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.78 E-value=8e-18 Score=175.66 Aligned_cols=250 Identities=12% Similarity=0.084 Sum_probs=197.9
Q ss_pred ccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEEccCCccccccccCccccCCCc
Q 005864 36 IGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLG 115 (673)
Q Consensus 36 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 115 (673)
+..+..++.+.+.++ ++.+...+|.++ +|+.+.|..+ ++.+...+|.+. +|+.+.|.. .++.+...+|.+|.+|+
T Consensus 109 ~~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 109 TEILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp EEECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred EEecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence 344577888888764 555667788885 7999998776 777888888884 799999986 67778888899999999
Q ss_pred EEEcccCccCccCChhhhccccccccccccccccccCCccccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCC
Q 005864 116 TLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNK 195 (673)
Q Consensus 116 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 195 (673)
.++|.+|.++.+...+|. ..+|+.+.|..+ ++.+...+|..+++|+.+++..| ++.+...+|.+ .+|+.+.+. +.
T Consensus 184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~ 258 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NG 258 (401)
T ss_dssp EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TT
T ss_pred eeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CC
Confidence 999999988876666776 588999998855 66677888888999999999875 56566677877 789999984 44
Q ss_pred CCCcCCccccccccccEEEccCCcCc-----cCCchhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCccccc
Q 005864 196 LSGSIPETLGNLLKVHYLNLSNNQFR-----KEFPVELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSG 270 (673)
Q Consensus 196 l~~~~~~~l~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 270 (673)
++.....+|.++++|+.+++.+|.+. .+....|.++++|+.++|.+ .++......|.++.+|+.+.|..| ++.
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 55566788889999999999888765 46677888899999999984 477566678888899999999555 777
Q ss_pred cCccccccCCCccEEEccCccccCCCCC
Q 005864 271 LIPSCFEGMHGLSCIDISYNELLGLIPN 298 (673)
Q Consensus 271 ~~~~~~~~~~~L~~l~l~~N~l~~~~~~ 298 (673)
+...+|.++ +|+.+++++|.+....+.
T Consensus 337 I~~~aF~~~-~L~~l~l~~n~~~~l~~~ 363 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGTTPPQVFEK 363 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred EcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence 778888888 899999999877655443
No 371
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=5.6e-21 Score=208.65 Aligned_cols=158 Identities=22% Similarity=0.175 Sum_probs=83.2
Q ss_pred cCccCChhhhccccccccc-cccccccccCCc-----cccC--CCCCCEEEccCccccccCCccccCCCCCCEEEeCCCC
Q 005864 124 ITGSIPPEIGKLYQLHKLD-FSLNQIVGEIPI-----ELGN--LKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNK 195 (673)
Q Consensus 124 l~~~~~~~l~~l~~L~~L~-l~~n~i~~~~~~-----~l~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 195 (673)
+.+..|..++.+++|+.|+ ++.|.+...... .+.. ...|+.|+|++|.+++ +|. +..+++|+.|+|++|.
T Consensus 397 ~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~ 474 (567)
T 1dce_A 397 PLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNR 474 (567)
T ss_dssp TGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSC
T ss_pred cccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccc
Confidence 3445566677777777777 555544210000 0000 0135556666665553 333 5555556666666665
Q ss_pred CCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCC-cccccCCCcccEEEecCccccccCcc
Q 005864 196 LSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEI-PPQICNLESLEKLNVSHNNLSGLIPS 274 (673)
Q Consensus 196 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~ 274 (673)
++ .+|..+..+++|+.|+|++|+|++ +| .+..+++|+.|+|++|.|++.. |..++.+++|+.|+|++|++++.+|.
T Consensus 475 l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 475 LR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred cc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 55 455555555556666666665554 33 5555555555566555555444 55555555555555555555554332
Q ss_pred ---ccccCCCccEEE
Q 005864 275 ---CFEGMHGLSCID 286 (673)
Q Consensus 275 ---~~~~~~~L~~l~ 286 (673)
.+..+++|+.|+
T Consensus 552 ~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 552 QERLAEMLPSVSSIL 566 (567)
T ss_dssp TTHHHHHCTTCSEEE
T ss_pred HHHHHHHCcccCccC
Confidence 122355555554
No 372
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=9.5e-19 Score=164.68 Aligned_cols=154 Identities=16% Similarity=0.256 Sum_probs=98.2
Q ss_pred hccccccccccccccccccCCccccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccE
Q 005864 133 GKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHY 212 (673)
Q Consensus 133 ~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 212 (673)
..+++|+.|++++|.++ .++ .+..+++|++|++++|.++. +..+..+++|++|++++|.+++..+..+..+++|+.
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 44555666666666665 333 45566666666666665542 235666667777777777776555666667777777
Q ss_pred EEccCCcCccCCchhhhcccCCCeEeecCCc-CCCCCcccccCCCcccEEEecCccccccCccccccCCCccEEEccCcc
Q 005864 213 LNLSNNQFRKEFPVELEKLVQLSELDLSHNF-LGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNE 291 (673)
Q Consensus 213 L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~ 291 (673)
|++++|++++..+..+..+++|+.|++++|. ++ .++ .+..+++|+.|++++|++++.. .+..+++|+.|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcc
Confidence 7777777766666667777777777777776 54 344 5677777777777777776643 56677777777777777
Q ss_pred ccC
Q 005864 292 LLG 294 (673)
Q Consensus 292 l~~ 294 (673)
+.+
T Consensus 193 i~~ 195 (197)
T 4ezg_A 193 IGG 195 (197)
T ss_dssp ---
T ss_pred cCC
Confidence 643
No 373
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=1.2e-21 Score=213.79 Aligned_cols=204 Identities=21% Similarity=0.185 Sum_probs=129.7
Q ss_pred cCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcc-------------cccccccccCCCCCccEEE-ccCCcccc
Q 005864 37 GNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNH-------------LTGNISEVFGIYPNLTFLD-ISHNNFYG 102 (673)
Q Consensus 37 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~-------------i~~~~~~~~~~l~~L~~L~-L~~n~i~~ 102 (673)
..+++|+.|+|++|+++ .+|..+.+|++|+.|++++|. +.+..+..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 56777888888888876 667778888888888876664 3344555566666666666 4544332
Q ss_pred ccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccccCCccccCCCCCCEEEccCccccccCCccccC
Q 005864 103 EIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGS 182 (673)
Q Consensus 103 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 182 (673)
.|..+.+.+|.++... ...|+.|+|++|.+++ +|. +..+++|+.|+|++|.++ .+|..+..
T Consensus 424 ----------~L~~l~l~~n~i~~l~------~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLKME------YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp ----------HHHHHHHHHHHHHHHH------HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred ----------hhhhhhhhcccccccC------ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence 2333334444443211 1236667777777663 454 666677777777777777 55666777
Q ss_pred CCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCC-chhhhcccCCCeEeecCCcCCCCCcc---cccCCCcc
Q 005864 183 LSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEF-PVELEKLVQLSELDLSHNFLGGEIPP---QICNLESL 258 (673)
Q Consensus 183 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~ls~N~l~~~~~~---~~~~l~~L 258 (673)
+++|+.|+|++|.+++ +| .+..+++|+.|+|++|+|++.. |..+..+++|+.|+|++|++++..|. .+..+++|
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L 562 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCccc
Confidence 7777777777777764 45 6677777777777777777655 67777777777777777777644332 12336677
Q ss_pred cEEEe
Q 005864 259 EKLNV 263 (673)
Q Consensus 259 ~~L~l 263 (673)
+.|++
T Consensus 563 ~~L~l 567 (567)
T 1dce_A 563 SSILT 567 (567)
T ss_dssp SEEEC
T ss_pred CccCC
Confidence 77654
No 374
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=6.4e-19 Score=173.72 Aligned_cols=169 Identities=22% Similarity=0.259 Sum_probs=83.0
Q ss_pred CCccEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccccCCccccCCCCCCEEEc
Q 005864 88 PNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVL 167 (673)
Q Consensus 88 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L 167 (673)
.++..+++++|.+++.. .+..+++|+.|++++|.++. ++ .+..+++|+.|++++|++++..+ +..+++|++|+|
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 34555555555555332 44555555555555555552 22 44555555555555555543222 445555555555
Q ss_pred cCccccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCC
Q 005864 168 NGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGE 247 (673)
Q Consensus 168 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~ 247 (673)
++|++++. +. +.. + +|+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 93 ~~N~l~~l-~~-~~~-~------------------------~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~ 143 (263)
T 1xeu_A 93 NRNRLKNL-NG-IPS-A------------------------CLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI 143 (263)
T ss_dssp CSSCCSCC-TT-CCC-S------------------------SCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC
T ss_pred CCCccCCc-Cc-ccc-C------------------------cccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC
Confidence 55555432 11 111 4 445555555544432 1344455555555555555432
Q ss_pred CcccccCCCcccEEEecCccccccCccccccCCCccEEEccCccccCC
Q 005864 248 IPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLGL 295 (673)
Q Consensus 248 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~ 295 (673)
+ .+..+++|+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 144 -~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 144 -V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred -h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 2 345555555555555555544 3455555555555555555544
No 375
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=1.5e-18 Score=163.30 Aligned_cols=153 Identities=18% Similarity=0.222 Sum_probs=98.1
Q ss_pred cCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEEccCCccccccccCccccCCCcE
Q 005864 37 GNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGT 116 (673)
Q Consensus 37 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 116 (673)
+.+++|+.|++++|.++ .+| .+..+++|++|++++|.+... ..+..+++|++|++++|.+++..+..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 45556666666666665 333 466666666666666655433 25666666666666666666555666666677777
Q ss_pred EEcccCccCccCChhhhcccccccccccccc-ccccCCccccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCC
Q 005864 117 LNFSMNNITGSIPPEIGKLYQLHKLDFSLNQ-IVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNK 195 (673)
Q Consensus 117 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 195 (673)
|++++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|+.|++++|++++. + .+..+++|+.|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcc
Confidence 7777777666556666677777777777776 44 333 566777777777777777743 2 56777777777777777
Q ss_pred CC
Q 005864 196 LS 197 (673)
Q Consensus 196 l~ 197 (673)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 65
No 376
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.76 E-value=9e-19 Score=179.16 Aligned_cols=239 Identities=11% Similarity=-0.043 Sum_probs=170.9
Q ss_pred CCCCCEEEeeCCccc--cCCCccccCCCCCCEEEcccCccccccCccccC--------CCCCcEEEccCccccccccccc
Q 005864 15 FTNLKGLYLYSNSLS--GSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRN--------LASLNRVHLEQNHLTGNISEVF 84 (673)
Q Consensus 15 l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~--------l~~L~~L~L~~n~i~~~~~~~~ 84 (673)
+++|++|+|++|+|. ......+ +.+..+.+..|.| .+.+|.+ +++|+.|+|.+ .++.+...+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCccccc---ccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 789999999999998 2222222 2345566666643 3456666 77777777777 7777777777
Q ss_pred CCCCCccEEEccCCccccccccCccccCCCcEEEcccCcc----CccCChhhhcccccc---------------------
Q 005864 85 GIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNI----TGSIPPEIGKLYQLH--------------------- 139 (673)
Q Consensus 85 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~l~~l~~L~--------------------- 139 (673)
.++++|+.|++++|.+..+...+|.++.++..+.+..+.. ......+|.++..|+
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~ 200 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQ 200 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCC
T ss_pred hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccC
Confidence 7777777777777777777777777776666666555221 112223333333333
Q ss_pred -----ccccccccccccCCccc-cCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCcccccccccc-E
Q 005864 140 -----KLDFSLNQIVGEIPIEL-GNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVH-Y 212 (673)
Q Consensus 140 -----~L~l~~n~i~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~-~ 212 (673)
.+.+.++-.. .....+ ..+++|+.|+|++|+++.+...+|.++++|+.|++++| ++...+.+|.++++|+ .
T Consensus 201 ~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 201 PRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGT 278 (329)
T ss_dssp GGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred ccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEE
Confidence 3333332111 111111 13689999999999999777788999999999999998 7767778899999999 9
Q ss_pred EEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEe
Q 005864 213 LNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNV 263 (673)
Q Consensus 213 L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l 263 (673)
|++.+ .++.+.+..|.++++|+.|++++|.++...+..|.++++|+.++.
T Consensus 279 l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 279 LELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 99998 788788899999999999999999999777778999999998864
No 377
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.75 E-value=2e-18 Score=161.53 Aligned_cols=157 Identities=22% Similarity=0.291 Sum_probs=103.9
Q ss_pred CEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCc-cccccccccEEEccCCcCccCCchhhhcccCCCeEeecC
Q 005864 163 NYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPE-TLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSH 241 (673)
Q Consensus 163 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~ 241 (673)
+.+++++|+++ .+|..+. ++|++|++++|.+++..+. .|..+++|+.|+|++|++++..|..|..+++|+.|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56666666665 4444332 2677777777777654443 366777777777777777776677777777777777777
Q ss_pred CcCCCCCcccccCCCcccEEEecCccccccCccccccCCCccEEEccCccccCCCCCCcccccCccccccCCcCCCCCCC
Q 005864 242 NFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLGLIPNSTGFQYDPIQALRGNRGLCGDVE 321 (673)
Q Consensus 242 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~~~~ 321 (673)
|++++..+..|.++++|++|+|++|++++..|..|..+++|++|++++|++.+..+-.+...+.....+.++...|+.|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCCh
Confidence 77776666667777777777777777777777777777778888888887777665433222222233445556666654
Q ss_pred C
Q 005864 322 G 322 (673)
Q Consensus 322 ~ 322 (673)
.
T Consensus 168 ~ 168 (192)
T 1w8a_A 168 K 168 (192)
T ss_dssp T
T ss_pred H
Confidence 3
No 378
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.74 E-value=7.9e-19 Score=197.77 Aligned_cols=223 Identities=24% Similarity=0.241 Sum_probs=110.1
Q ss_pred CCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEEccCCccccccccCccccCCCcEEEc
Q 005864 40 MQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNF 119 (673)
Q Consensus 40 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 119 (673)
++++.|+|.+|.+.. .+. ..|+.++|+.|.|. .++++.|.+. ..+..+..++.|+.|+|
T Consensus 173 ~~~~~l~L~~n~~~~-~~~-----~~l~~l~Ls~~~i~--------------~~~~~~n~~~-~~~~~~~~l~~L~~L~L 231 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQ-----ALLQHKKLSQYSID--------------EDDDIENRMV-MPKDSKYDDQLWHALDL 231 (727)
T ss_dssp ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred CccceEEeeCCCCCc-chh-----hHhhcCccCccccc--------------Ccccccccee-cChhhhccCCCCcEEEC
Confidence 456666676666653 222 22344444444443 2234445554 55667777888888888
Q ss_pred ccCccCccCChhhhccccccccccccccccccCCccccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCc
Q 005864 120 SMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGS 199 (673)
Q Consensus 120 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 199 (673)
++|.+. .++..+..+++|++|+|++|.|+ .+|..|..+++|+.|+|++|.|+ .+|..|..+++|++|+|++|.++ .
T Consensus 232 s~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~ 307 (727)
T 4b8c_D 232 SNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-T 307 (727)
T ss_dssp TTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-C
T ss_pred CCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-c
Confidence 888887 56666668888888888888887 77777888888888888888888 66777888888888888888887 6
Q ss_pred CCccccccccccEEEccCCcCccCCchhhhcccC-CCeEeecCCcCCCCCcccccCCCcccEEEecCc--------cccc
Q 005864 200 IPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQ-LSELDLSHNFLGGEIPPQICNLESLEKLNVSHN--------NLSG 270 (673)
Q Consensus 200 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N--------~l~~ 270 (673)
+|..|.++++|+.|+|++|.+++.+|..+..+.. +..|+|++|.+++.+|.. |..|++++| .+.+
T Consensus 308 lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~ 381 (727)
T 4b8c_D 308 LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQ 381 (727)
T ss_dssp CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------------------
T ss_pred cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccc
Confidence 7777888888888888888888777777755422 234778888888777654 445566665 3333
Q ss_pred cCccccccCCCccEEEccCcccc
Q 005864 271 LIPSCFEGMHGLSCIDISYNELL 293 (673)
Q Consensus 271 ~~~~~~~~~~~L~~l~l~~N~l~ 293 (673)
..+..+..+..+....+++|-+.
T Consensus 382 ~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 382 STEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp --------------------CCC
T ss_pred cccchhhcccccceeeeeccccc
Confidence 33344445555555666666554
No 379
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=2.5e-18 Score=193.73 Aligned_cols=223 Identities=20% Similarity=0.228 Sum_probs=106.1
Q ss_pred CCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEEc
Q 005864 16 TNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDI 95 (673)
Q Consensus 16 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 95 (673)
+.++.|+|..|.+... +. ..|+.++|+.|.|... +++.|.+. +++..|..+++|+.|+|
T Consensus 173 ~~~~~l~L~~n~~~~~-~~-----~~l~~l~Ls~~~i~~~--------------~~~~n~~~-~~~~~~~~l~~L~~L~L 231 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQ-----ALLQHKKLSQYSIDED--------------DDIENRMV-MPKDSKYDDQLWHALDL 231 (727)
T ss_dssp ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred CccceEEeeCCCCCcc-hh-----hHhhcCccCcccccCc--------------ccccccee-cChhhhccCCCCcEEEC
Confidence 6689999999999853 32 3356667777766522 33344544 45566777777777777
Q ss_pred cCCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccccCCccccCCCCCCEEEccCcccccc
Q 005864 96 SHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGN 175 (673)
Q Consensus 96 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~ 175 (673)
++|.+..+ +..+..+++|++|+|++|.|+ .+|..|+.+++|+.|+|++|.|+ .+|..+..+++|++|+|++|.|+ .
T Consensus 232 s~n~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~ 307 (727)
T 4b8c_D 232 SNLQIFNI-SANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-T 307 (727)
T ss_dssp TTSCCSCC-CGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-C
T ss_pred CCCCCCCC-ChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-c
Confidence 77777633 344457778888888888887 67777888888888888888887 66878888888888888888887 6
Q ss_pred CCccccCCCCCCEEEeCCCCCCCcCCcccccccc-ccEEEccCCcCccCCchhhhcccCCCeEeecCC--------cCCC
Q 005864 176 LPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLK-VHYLNLSNNQFRKEFPVELEKLVQLSELDLSHN--------FLGG 246 (673)
Q Consensus 176 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N--------~l~~ 246 (673)
+|..|..+++|+.|+|++|.+++.+|..+..+.. +..|+|++|.+++.+|. .|+.|+++.| .+.+
T Consensus 308 lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~ 381 (727)
T 4b8c_D 308 LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQ 381 (727)
T ss_dssp CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------------------
T ss_pred cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccc
Confidence 6777888888888888888888777777655422 23477888888876664 3455666666 3333
Q ss_pred CCcccccCCCcccEEEecCcccc
Q 005864 247 EIPPQICNLESLEKLNVSHNNLS 269 (673)
Q Consensus 247 ~~~~~~~~l~~L~~L~l~~N~l~ 269 (673)
..+..+..+..+....+++|-+.
T Consensus 382 ~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 382 STEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp --------------------CCC
T ss_pred cccchhhcccccceeeeeccccc
Confidence 34444555666667777777664
No 380
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.71 E-value=2.3e-17 Score=154.28 Aligned_cols=131 Identities=25% Similarity=0.299 Sum_probs=107.9
Q ss_pred CEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCC
Q 005864 163 NYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHN 242 (673)
Q Consensus 163 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N 242 (673)
+.+++++|+++ .+|..+. ++|+.|++++|.++ .+|..|..+++|+.|+|++|.|++..+..|..+++|+.|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 56777777777 4454332 57888888888887 66778888888888888888888877788888888899999999
Q ss_pred cCCCCCcccccCCCcccEEEecCccccccCccccccCCCccEEEccCccccCCCC
Q 005864 243 FLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLGLIP 297 (673)
Q Consensus 243 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~ 297 (673)
.+++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|++++|++.+...
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 8887777788889999999999999988877788889999999999999987654
No 381
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.69 E-value=1.3e-17 Score=169.52 Aligned_cols=148 Identities=10% Similarity=0.097 Sum_probs=103.3
Q ss_pred HHHHhcCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhh-----------hHHHHH--------HHHHHHHHhc
Q 005864 397 IIRATKNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSE-----------ISVQRE--------FLNEIKALTE 457 (673)
Q Consensus 397 ~~~~~~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~-----------~~~~~~--------~~~e~~~l~~ 457 (673)
+.....-|++.+.||+|++|.||+|..++|+.||||+++.....- ...... ..+|...|.+
T Consensus 90 L~~rg~iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~r 169 (397)
T 4gyi_A 90 HAARKDVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKA 169 (397)
T ss_dssp HHHTTSCSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCEEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 333344589999999999999999999999999999875421110 000111 2345555555
Q ss_pred cCCCcccceeeeeecCCeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCC
Q 005864 458 IRHRNIVKFYGFCSHPRHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKN 537 (673)
Q Consensus 458 l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~N 537 (673)
+.+.++....-+.. ...++||||++|++|.++... .....++.|++.+|.|||+. |||||||||.|
T Consensus 170 L~~~gv~vp~p~~~--~~~~LVME~i~G~~L~~l~~~---------~~~~~l~~qll~~l~~lH~~---gIVHrDLKp~N 235 (397)
T 4gyi_A 170 LYEEGFPVPEPIAQ--SRHTIVMSLVDALPMRQVSSV---------PDPASLYADLIALILRLAKH---GLIHGDFNEFN 235 (397)
T ss_dssp HHHTTCSCCCEEEE--ETTEEEEECCSCEEGGGCCCC---------SCHHHHHHHHHHHHHHHHHT---TEECSCCSTTS
T ss_pred HHhcCCCCCeeeec--cCceEEEEecCCccHhhhccc---------HHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHH
Confidence 54433322111111 224799999999888765321 12346789999999999999 99999999999
Q ss_pred eEeCCCC----------ceEEecccceeecC
Q 005864 538 VLLSSEY----------EARVSDFGIAKFLK 558 (673)
Q Consensus 538 ill~~~~----------~~kl~Dfg~~~~~~ 558 (673)
||+++++ .+.|+||+-+....
T Consensus 236 ILl~~dgd~~d~~~~~~~~~iID~~Q~V~~~ 266 (397)
T 4gyi_A 236 ILIREEKDAEDPSSITLTPIIIXFPQMVSMD 266 (397)
T ss_dssp EEEEEEECSSCTTSEEEEEEECCCTTCEETT
T ss_pred EEEeCCCCcccccccccceEEEEeCCcccCC
Confidence 9998876 38999999886543
No 382
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=6.6e-17 Score=151.17 Aligned_cols=129 Identities=26% Similarity=0.353 Sum_probs=71.5
Q ss_pred ccccccccccccCCccccCCCCCCEEEccCccccccCCc-cccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCC
Q 005864 140 KLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLPR-VLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNN 218 (673)
Q Consensus 140 ~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 218 (673)
.+++++|.++ .+|..+. ++|++|++++|.+++..+. .|..+++|++|+|++|.+++..|..|..+++|+.|+|++|
T Consensus 12 ~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 3444444443 3333332 2555555555555544332 3555555666666666555555555555556666666666
Q ss_pred cCccCCchhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCcccccc
Q 005864 219 QFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGL 271 (673)
Q Consensus 219 ~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 271 (673)
+|++..+..|..+++|+.|+|++|++++..|..|..+++|++|+|++|++.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 66555555555566666666666666655555566666666666666666544
No 383
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=8.9e-17 Score=147.00 Aligned_cols=132 Identities=23% Similarity=0.240 Sum_probs=78.3
Q ss_pred CCCCEEEeeCCccc-cCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEE
Q 005864 16 TNLKGLYLYSNSLS-GSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLD 94 (673)
Q Consensus 16 ~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 94 (673)
++|++|+|++|.++ +.+|..+..+++|++|+|++|.+++. ..+..+++|++|+|++|++++..+..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 55666666666665 44555566666666666666666543 5566666666666666666655555555566666666
Q ss_pred ccCCccccccc-cCccccCCCcEEEcccCccCccCC---hhhhcccccccccccccccc
Q 005864 95 ISHNNFYGEIW-SSWGKCQQLGTLNFSMNNITGSIP---PEIGKLYQLHKLDFSLNQIV 149 (673)
Q Consensus 95 L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~~n~i~ 149 (673)
|++|.+++... ..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 66666654322 455556666666666666654333 34555555555555555554
No 384
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=1.6e-16 Score=145.34 Aligned_cols=136 Identities=26% Similarity=0.279 Sum_probs=112.3
Q ss_pred CCCCCEEEccCcccc-ccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeE
Q 005864 159 LKSLNYLVLNGNKLS-GNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSEL 237 (673)
Q Consensus 159 l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 237 (673)
.++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++..|..+..+++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 367888888888887 56677778888888888888888854 678888889999999999887778888888899999
Q ss_pred eecCCcCCCCC-cccccCCCcccEEEecCccccccCc---cccccCCCccEEEccCccccCCC
Q 005864 238 DLSHNFLGGEI-PPQICNLESLEKLNVSHNNLSGLIP---SCFEGMHGLSCIDISYNELLGLI 296 (673)
Q Consensus 238 ~ls~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~~~~L~~l~l~~N~l~~~~ 296 (673)
++++|.+++.. +..+..+++|+.|++++|++++..+ ..+..+++|++|++++|.+...+
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 99999988542 2678889999999999999987766 57888999999999999876544
No 385
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=3.7e-16 Score=139.69 Aligned_cols=129 Identities=26% Similarity=0.316 Sum_probs=105.4
Q ss_pred CCCCCEEEccCcccc-ccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeE
Q 005864 159 LKSLNYLVLNGNKLS-GNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSEL 237 (673)
Q Consensus 159 l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 237 (673)
.++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++..|..+..+++|+.|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 367888888888887 56777778888888888888888754 667888888888888888887778888888889999
Q ss_pred eecCCcCCCC-CcccccCCCcccEEEecCccccccCc---cccccCCCccEEEccC
Q 005864 238 DLSHNFLGGE-IPPQICNLESLEKLNVSHNNLSGLIP---SCFEGMHGLSCIDISY 289 (673)
Q Consensus 238 ~ls~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~~~~L~~l~l~~ 289 (673)
++++|.+++. .+..+..+++|++|++++|++++..+ ..+..+++|+.|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999988853 34778889999999999999988766 5788899999998864
No 386
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=2.2e-16 Score=141.22 Aligned_cols=128 Identities=24% Similarity=0.249 Sum_probs=99.6
Q ss_pred CCCCEEEeeCCccc-cCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEE
Q 005864 16 TNLKGLYLYSNSLS-GSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLD 94 (673)
Q Consensus 16 ~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 94 (673)
++|++|++++|.++ +..|..+..+++|++|++++|.+++. ..+..+++|++|+|++|++++..+..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 67888888888887 66777788888888888888888755 6778888888888888888876677777788888888
Q ss_pred ccCCcccccc-ccCccccCCCcEEEcccCccCccCC---hhhhcccccccccccc
Q 005864 95 ISHNNFYGEI-WSSWGKCQQLGTLNFSMNNITGSIP---PEIGKLYQLHKLDFSL 145 (673)
Q Consensus 95 L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~~ 145 (673)
+++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8888887642 3667778888888888888876555 4677777777777753
No 387
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=7.2e-16 Score=144.04 Aligned_cols=127 Identities=21% Similarity=0.243 Sum_probs=85.5
Q ss_pred CEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEEccCC
Q 005864 19 KGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDISHN 98 (673)
Q Consensus 19 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 98 (673)
+++++++|+++ .+|..+. ++|++|+|++|+|+ .+|..|.++++|+.|+|++|+|+++.+..|..+++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 56777777777 4454443 46777777777776 55667777777777777777777777677777777777777777
Q ss_pred ccccccccCccccCCCcEEEcccCccCccCChhhhcccccccccccccccc
Q 005864 99 NFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIV 149 (673)
Q Consensus 99 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 149 (673)
.|+.+.+..|..+++|+.|+|++|.|+...+..|..+++|+.|+|++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 777666666666667777777766666554445555666666666665554
No 388
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=9.6e-16 Score=141.39 Aligned_cols=133 Identities=24% Similarity=0.232 Sum_probs=95.8
Q ss_pred CCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecC
Q 005864 162 LNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSH 241 (673)
Q Consensus 162 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~ 241 (673)
.+.+++++|+++. +|..+ .++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 4566666666663 33222 25677777777777755555667777777777777777766666677777788888888
Q ss_pred CcCCCCCcccccCCCcccEEEecCccccccCccccccCCCccEEEccCccccCCCC
Q 005864 242 NFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLGLIP 297 (673)
Q Consensus 242 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~ 297 (673)
|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++.+.+|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 88876666667778888888888888887766667778888888888888887665
No 389
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.63 E-value=5.5e-15 Score=154.99 Aligned_cols=274 Identities=12% Similarity=0.082 Sum_probs=162.5
Q ss_pred ccccCCCcccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccc----
Q 005864 4 LSGAIPPSVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGN---- 79 (673)
Q Consensus 4 i~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~---- 79 (673)
++.+-..+|.++.+|+.+.|..+ ++.+...+|.++++|+.++|.++ ++.+...+|.++.+|+.+.+..+ +..+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 45556678999999999999754 77788889999999999999865 66567788999988888777543 2222
Q ss_pred ------------------cccccCCCCCccEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhcccccccc
Q 005864 80 ------------------ISEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKL 141 (673)
Q Consensus 80 ------------------~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 141 (673)
...+|.++++|+.+.+.++ +..+...+|.++.+|+.+.+..+ ++.+...+|.++..|+.+
T Consensus 136 F~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 136 FKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM 213 (394)
T ss_dssp TTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred eecccccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence 3345666666666666544 23355666666666666666554 443455566666666666
Q ss_pred ccccccccccCCccccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCc-------------------
Q 005864 142 DFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPE------------------- 202 (673)
Q Consensus 142 ~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~------------------- 202 (673)
.+..+... . ........+|+.+.+..+. +......|..+..|+.+.+..+... ....
T Consensus 214 ~~~~~~~~-i-~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~ 289 (394)
T 4fs7_A 214 EFPNSLYY-L-GDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP 289 (394)
T ss_dssp CCCTTCCE-E-CTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC
T ss_pred ecCCCceE-e-ehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec
Confidence 65544322 1 1112222344444444322 2233344555566666666554332 2233
Q ss_pred --cccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCccccccCccccccCC
Q 005864 203 --TLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMH 280 (673)
Q Consensus 203 --~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 280 (673)
.|..+.+|+.+.+.++ ++.+....|.++.+|+.++|.++ ++.+...+|.++.+|+.+++..| ++.+...+|.++.
T Consensus 290 ~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 290 EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI 366 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence 3445555555555443 44444555666666666666543 44344455666666666666554 5555555666666
Q ss_pred CccEEEccC
Q 005864 281 GLSCIDISY 289 (673)
Q Consensus 281 ~L~~l~l~~ 289 (673)
+|+.+++..
T Consensus 367 ~L~~i~lp~ 375 (394)
T 4fs7_A 367 NLKKVELPK 375 (394)
T ss_dssp TCCEEEEEG
T ss_pred CCCEEEECC
Confidence 666666543
No 390
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=3.9e-15 Score=137.25 Aligned_cols=127 Identities=24% Similarity=0.274 Sum_probs=63.6
Q ss_pred CEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEEccCC
Q 005864 19 KGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDISHN 98 (673)
Q Consensus 19 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 98 (673)
+.+++++|+++. +|..+ .++|+.|++++|++++..+..|..+++|++|+|++|+++++++..|..+++|++|+|++|
T Consensus 10 ~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 455555555552 33222 245555555555555444444555555555555555555555555555555555555555
Q ss_pred ccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccc
Q 005864 99 NFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQI 148 (673)
Q Consensus 99 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 148 (673)
.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 55544444444455555555555555433333334444444444444444
No 391
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.61 E-value=1.5e-15 Score=139.95 Aligned_cols=135 Identities=18% Similarity=0.168 Sum_probs=91.0
Q ss_pred CcccCCCCCCEEEeeCCccccCCCccccCCC-CCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCC
Q 005864 10 PSVGNFTNLKGLYLYSNSLSGSVPGEIGNLM-QLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYP 88 (673)
Q Consensus 10 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 88 (673)
..+.++++|++|+|++|.++. ++. +..+. +|++|+|++|.|++. ..|..+++|++|+|++|+|+++++..|..++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HhcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 345667777778888777774 343 44443 777777777777754 5677777777777777777776666667777
Q ss_pred CccEEEccCCccccccc-cCccccCCCcEEEcccCccCccCCh----hhhcccccccccccccccc
Q 005864 89 NLTFLDISHNNFYGEIW-SSWGKCQQLGTLNFSMNNITGSIPP----EIGKLYQLHKLDFSLNQIV 149 (673)
Q Consensus 89 ~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~l~~n~i~ 149 (673)
+|++|+|++|.++.... ..+..+++|+.|++++|.++. .|. .+..+++|+.||+++|.+.
T Consensus 89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 77777777777764432 356677777777777777763 343 3666666777777666654
No 392
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=2.8e-15 Score=138.05 Aligned_cols=135 Identities=21% Similarity=0.208 Sum_probs=99.3
Q ss_pred cccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCC
Q 005864 155 ELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQL 234 (673)
Q Consensus 155 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 234 (673)
.+..+++|+.|++++|+++. ++......++|+.|++++|.+++. ..+..+++|+.|++++|.+++..+..+..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 34556777888888887773 344333334788888888888754 567778888888888888887665666888888
Q ss_pred CeEeecCCcCCCCCcc--cccCCCcccEEEecCccccccCcc---ccccCCCccEEEccCcccc
Q 005864 235 SELDLSHNFLGGEIPP--QICNLESLEKLNVSHNNLSGLIPS---CFEGMHGLSCIDISYNELL 293 (673)
Q Consensus 235 ~~L~ls~N~l~~~~~~--~~~~l~~L~~L~l~~N~l~~~~~~---~~~~~~~L~~l~l~~N~l~ 293 (673)
+.|++++|.+. .+|. .+..+++|+.|++++|+++...+. .+..+++|+.||+++|...
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 88888888886 5555 678888888888888888755332 4778888888888888764
No 393
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.58 E-value=8.6e-17 Score=151.36 Aligned_cols=156 Identities=22% Similarity=0.227 Sum_probs=123.1
Q ss_pred hhccccccccccccccccccCCc------cccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCcccc
Q 005864 132 IGKLYQLHKLDFSLNQIVGEIPI------ELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLG 205 (673)
Q Consensus 132 l~~l~~L~~L~l~~n~i~~~~~~------~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 205 (673)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 44556677777777777666655 67778888888888888885 55 7788888999999998888 6777777
Q ss_pred ccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCc-ccccCCCcccEEEecCccccccCcc----------
Q 005864 206 NLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIP-PQICNLESLEKLNVSHNNLSGLIPS---------- 274 (673)
Q Consensus 206 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~---------- 274 (673)
.+++|+.|++++|++++ +| .+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|++.+..|.
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence 78899999999999986 34 68888899999999999984332 4788899999999999999877554
Q ss_pred ccccCCCccEEEccCccccC
Q 005864 275 CFEGMHGLSCIDISYNELLG 294 (673)
Q Consensus 275 ~~~~~~~L~~l~l~~N~l~~ 294 (673)
.+..+++|+.|| +|+++.
T Consensus 169 ~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 169 VVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHCSSCSEEC--CGGGTT
T ss_pred HHHhCCCcEEEC--CcccCH
Confidence 378899999887 777764
No 394
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.56 E-value=2.2e-13 Score=142.67 Aligned_cols=279 Identities=13% Similarity=0.123 Sum_probs=209.5
Q ss_pred ccccCCCcccCCC-CCCEEEeeCCccccCCCccccCCCCCCEEEcccCc---cccccCccccCCCCCcEEEccCcccccc
Q 005864 4 LSGAIPPSVGNFT-NLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQ---LFGQIPRSLRNLASLNRVHLEQNHLTGN 79 (673)
Q Consensus 4 i~~~~p~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~---i~~~~~~~l~~l~~L~~L~L~~n~i~~~ 79 (673)
++..-..+|.+.. .|+.+.|..+ ++.+...+|.++++|+.+.+.+|. ++.+...+|.++.+|+.+.+..+ ++.+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 4445566788874 6999999865 777888999999999999998864 66667788999999999888754 6778
Q ss_pred cccccCCCCCccEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhccccccccccccccccccCCccccCC
Q 005864 80 ISEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNL 159 (673)
Q Consensus 80 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l 159 (673)
...+|..+.+|+.+.+..+ +..+...+|..+..|+.+.+..+ ++.+...+|.. ..|+.+.+..+-.. ....++..+
T Consensus 129 ~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c 204 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSEC 204 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTC
T ss_pred hhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhc
Confidence 8889999999999999754 45577888999999999998765 44455556654 56777777655332 444555555
Q ss_pred CCCCEEEccCc------------------------------------cccccCCccccCCCCCCEEEeCCCCCCCcCCcc
Q 005864 160 KSLNYLVLNGN------------------------------------KLSGNLPRVLGSLSELEYLDLSTNKLSGSIPET 203 (673)
Q Consensus 160 ~~L~~L~L~~n------------------------------------~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 203 (673)
.++.......+ .++.....+|..+..|+.+.+..+... ....+
T Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~a 283 (394)
T 4gt6_A 205 FALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-IGTGA 283 (394)
T ss_dssp TTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTT
T ss_pred cccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce-ecCcc
Confidence 55555443322 122233456788888999988776554 66678
Q ss_pred ccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCccccccCccccccCCCcc
Q 005864 204 LGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLS 283 (673)
Q Consensus 204 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~ 283 (673)
|.++++|+.+.+. +.++.+....|.++.+|+.++|..+ ++.+...+|.++.+|+.+.|..+ ++.+...+|.++.+|+
T Consensus 284 F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 284 FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALN 360 (394)
T ss_dssp TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence 8889999999986 5566677788999999999999865 65455678889999999999654 7777788999999999
Q ss_pred EEEccCccc
Q 005864 284 CIDISYNEL 292 (673)
Q Consensus 284 ~l~l~~N~l 292 (673)
.+++.+|..
T Consensus 361 ~i~~~~~~~ 369 (394)
T 4gt6_A 361 NIEYSGSRS 369 (394)
T ss_dssp EEEESSCHH
T ss_pred EEEECCcee
Confidence 999988754
No 395
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=7.5e-17 Score=151.76 Aligned_cols=154 Identities=23% Similarity=0.291 Sum_probs=107.5
Q ss_pred ccCCCcEEEcccCccCccCCh------hhhccccccccccccccccccCCccccCCCCCCEEEccCccccccCCccccCC
Q 005864 110 KCQQLGTLNFSMNNITGSIPP------EIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGSL 183 (673)
Q Consensus 110 ~l~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 183 (673)
....++.++++.+.+++..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence 344455555555555544444 67777777777777777764 45 6677777788888877777 456666666
Q ss_pred CCCCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCc-hhhhcccCCCeEeecCCcCCCCCcc----------cc
Q 005864 184 SELEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFP-VELEKLVQLSELDLSHNFLGGEIPP----------QI 252 (673)
Q Consensus 184 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ls~N~l~~~~~~----------~~ 252 (673)
++|+.|++++|.+++ +| .+..+++|+.|++++|++++..+ ..+..+++|+.|++++|++.+..|. .+
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 788888888888874 34 57778888888888888875433 4677788888888888888755443 26
Q ss_pred cCCCcccEEEecCccccc
Q 005864 253 CNLESLEKLNVSHNNLSG 270 (673)
Q Consensus 253 ~~l~~L~~L~l~~N~l~~ 270 (673)
..+++|+.|+ +|.++.
T Consensus 171 ~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 171 KRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHCSSCSEEC--CGGGTT
T ss_pred HhCCCcEEEC--CcccCH
Confidence 7788888876 676654
No 396
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.53 E-value=1.3e-13 Score=144.43 Aligned_cols=272 Identities=11% Similarity=0.031 Sum_probs=196.4
Q ss_pred CCccccCCCcccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccC---------------------ccccccCccc
Q 005864 2 NHLSGAIPPSVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNN---------------------QLFGQIPRSL 60 (673)
Q Consensus 2 n~i~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n---------------------~i~~~~~~~l 60 (673)
++|+..-..+|.++++|+.++|..+ ++.+...+|.++.+|+.+.+..+ .+......+|
T Consensus 80 ~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF 158 (394)
T 4fs7_A 80 STVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPEGVTVIGDEAF 158 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCTTCCEECTTTT
T ss_pred CCccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCccccccchhhh
Confidence 4566666788999999999999865 66677788888888887776543 1122345678
Q ss_pred cCCCCCcEEEccCcccccccccccCCCCCccEEEccCCccccccccCccccCCCcEEEcccCccC---------------
Q 005864 61 RNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNIT--------------- 125 (673)
Q Consensus 61 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--------------- 125 (673)
.++++|+.+.+.++ +..+...+|.++++|+.+++..+ ++.+...+|.++..|+.+.+..+...
T Consensus 159 ~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ 236 (394)
T 4fs7_A 159 ATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNII 236 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEE
T ss_pred cccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEE
Confidence 88999999999765 45578889999999999999876 66677788888888888777655332
Q ss_pred ------ccCChhhhccccccccccccccccccCCccccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCc
Q 005864 126 ------GSIPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGS 199 (673)
Q Consensus 126 ------~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 199 (673)
.+...+|..+..|+.+.+..+... .....|..++.++.+....+.+ ....|..+.+|+.+.+..+ ++..
T Consensus 237 ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I 311 (394)
T 4fs7_A 237 IPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFI 311 (394)
T ss_dssp ECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEE
T ss_pred ECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-ccee
Confidence 112233444444555555444332 4444555555555555554432 2346778889999998765 5546
Q ss_pred CCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCccccccCccccccC
Q 005864 200 IPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGM 279 (673)
Q Consensus 200 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~ 279 (673)
...+|.++.+|+.+++.++ ++.+....|.++.+|+.+++..| ++.....+|.++.+|+.+++..+ ++. ...+|.++
T Consensus 312 ~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~-~~~~F~~c 387 (394)
T 4fs7_A 312 GEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQ-YRYDFEDT 387 (394)
T ss_dssp CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGG-GGGGBCTT
T ss_pred chhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEE-hhheecCC
Confidence 6778999999999999755 77778889999999999999887 76566778999999999999866 332 24678888
Q ss_pred CCccEE
Q 005864 280 HGLSCI 285 (673)
Q Consensus 280 ~~L~~l 285 (673)
++|+.+
T Consensus 388 ~~L~~I 393 (394)
T 4fs7_A 388 TKFKWI 393 (394)
T ss_dssp CEEEEE
T ss_pred CCCcEE
Confidence 888765
No 397
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.52 E-value=4.1e-13 Score=140.63 Aligned_cols=279 Identities=10% Similarity=0.105 Sum_probs=206.6
Q ss_pred CCccccCCCcccCCCCCCEEEeeCCc---cccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCccccc
Q 005864 2 NHLSGAIPPSVGNFTNLKGLYLYSNS---LSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTG 78 (673)
Q Consensus 2 n~i~~~~p~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~ 78 (673)
+.++..-..+|.++++|+.+.+..|. ++.+...+|.++.+|+.+.+.++ ++.....+|..+.+|+.+.+.. .+..
T Consensus 73 ~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~-~~~~ 150 (394)
T 4gt6_A 73 DTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPE-GVTS 150 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCT-TCCE
T ss_pred CCeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccc-eeee
Confidence 34666777889999999999998874 77778889999999999888765 5556778899999999999975 4566
Q ss_pred ccccccCCCCCccEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhcccccccccccc-------------
Q 005864 79 NISEVFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSL------------- 145 (673)
Q Consensus 79 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~------------- 145 (673)
+...+|..+.+|+.+.+..+ +..+...+|.. ..|+.+.+..+-.. +...+|..+.+|.......
T Consensus 151 I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~ 227 (394)
T 4gt6_A 151 VADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPAIDNVLYEK 227 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEE
T ss_pred ecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccceecccccccccccceeecc
Confidence 77888999999999999765 55566777754 56888887655333 4445555555544433221
Q ss_pred -----------------------ccccccCCccccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCc
Q 005864 146 -----------------------NQIVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPE 202 (673)
Q Consensus 146 -----------------------n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 202 (673)
+.++.....+|..+..|+.+.+..+... ....+|.++++|+.+.+.. .++.....
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~ 305 (394)
T 4gt6_A 228 SANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPES 305 (394)
T ss_dssp CTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTT
T ss_pred cccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCce
Confidence 1222234567888899999999877655 6777899999999999974 55546677
Q ss_pred cccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCccccccCccccccCCCc
Q 005864 203 TLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGL 282 (673)
Q Consensus 203 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L 282 (673)
+|.++.+|+.+.+..+ ++.+....|.++.+|+.+.|..+ ++.+...+|.++.+|+.+++.+|.... ..+....+|
T Consensus 306 aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L 380 (394)
T 4gt6_A 306 VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGL 380 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC
T ss_pred eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCC
Confidence 8999999999999865 77777889999999999999765 665667889999999999999986542 456777888
Q ss_pred cEEEccCccc
Q 005864 283 SCIDISYNEL 292 (673)
Q Consensus 283 ~~l~l~~N~l 292 (673)
+.+.+..|.+
T Consensus 381 ~~i~i~~~~~ 390 (394)
T 4gt6_A 381 QNLPVAPGSI 390 (394)
T ss_dssp ----------
T ss_pred CEEEeCCCCE
Confidence 8888776654
No 398
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.51 E-value=5.4e-14 Score=128.38 Aligned_cols=109 Identities=26% Similarity=0.288 Sum_probs=76.5
Q ss_pred CCEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEecC
Q 005864 186 LEYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSH 265 (673)
Q Consensus 186 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~ 265 (673)
.+.+++++|.++ .+|..+. ++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 456666666666 3454442 5667777777777766666777777777777777777765555667777777777777
Q ss_pred ccccccCccccccCCCccEEEccCccccCCCC
Q 005864 266 NNLSGLIPSCFEGMHGLSCIDISYNELLGLIP 297 (673)
Q Consensus 266 N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~ 297 (673)
|+|++..+..|..+++|+.|+|++|++.+.++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 77777766677777778888888887777655
No 399
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.48 E-value=1.3e-13 Score=126.18 Aligned_cols=108 Identities=23% Similarity=0.279 Sum_probs=68.3
Q ss_pred CEEEeCCCCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCc
Q 005864 187 EYLDLSTNKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHN 266 (673)
Q Consensus 187 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N 266 (673)
+.+++++|.++ .+|..+. ++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45556666554 4444443 45666666666666655666666666666666666666544445566677777777777
Q ss_pred cccccCccccccCCCccEEEccCccccCCCC
Q 005864 267 NLSGLIPSCFEGMHGLSCIDISYNELLGLIP 297 (673)
Q Consensus 267 ~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~ 297 (673)
+|+++.+..|..+++|+.|+|++|++.+.++
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 7766655566677777777777777766554
No 400
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=2.5e-13 Score=123.97 Aligned_cols=107 Identities=23% Similarity=0.230 Sum_probs=89.1
Q ss_pred CCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEEccC
Q 005864 18 LKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDISH 97 (673)
Q Consensus 18 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 97 (673)
.++|++++|.++ .+|..+. ++|++|+|++|+|++..|..|..+++|++|+|++|+|+++++..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 578888888888 4565553 7888899999988877788888888899999998888888888888888888888888
Q ss_pred CccccccccCccccCCCcEEEcccCccCcc
Q 005864 98 NNFYGEIWSSWGKCQQLGTLNFSMNNITGS 127 (673)
Q Consensus 98 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 127 (673)
|+|+++.+..|..+++|+.|+|++|.++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 888887777788888888888888888743
No 401
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=2.9e-13 Score=123.92 Aligned_cols=106 Identities=23% Similarity=0.250 Sum_probs=90.2
Q ss_pred CCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEEccC
Q 005864 18 LKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDISH 97 (673)
Q Consensus 18 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 97 (673)
-+.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|.++++|+.|+|++|+|+++++..|..+++|++|+|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 478899999987 5666554 7899999999999887788888999999999999999988888888889999999999
Q ss_pred CccccccccCccccCCCcEEEcccCccCc
Q 005864 98 NNFYGEIWSSWGKCQQLGTLNFSMNNITG 126 (673)
Q Consensus 98 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 126 (673)
|+|+++.+..|..+++|+.|+|++|.+..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 99987777778888889999999888873
No 402
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.43 E-value=6.6e-15 Score=152.07 Aligned_cols=158 Identities=18% Similarity=0.140 Sum_probs=70.5
Q ss_pred CCccEEEccCCccccccccCcccc-----CCCcEEEcccCccCccCChhh-hccccccccccccccccccCCccc-----
Q 005864 88 PNLTFLDISHNNFYGEIWSSWGKC-----QQLGTLNFSMNNITGSIPPEI-GKLYQLHKLDFSLNQIVGEIPIEL----- 156 (673)
Q Consensus 88 ~~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~n~i~~~~~~~l----- 156 (673)
++|++|+|++|.++......+..+ .+|+.|+|++|.++......+ ..+++|++|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 345555555555554333333322 455555555555543222222 223455555555555543222222
Q ss_pred cCCCCCCEEEccCcccccc----CCccccCCCCCCEEEeCCCCCCCcC----CccccccccccEEEccCCcCccCCc---
Q 005864 157 GNLKSLNYLVLNGNKLSGN----LPRVLGSLSELEYLDLSTNKLSGSI----PETLGNLLKVHYLNLSNNQFRKEFP--- 225 (673)
Q Consensus 157 ~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~--- 225 (673)
...++|++|+|++|.+++. ++..+..+++|++|+|++|.+++.. +..+...++|+.|+|++|.|+....
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 1234566666666655431 2223344555555555555554321 2333344455555555555543211
Q ss_pred -hhhhcccCCCeEeecCCcCC
Q 005864 226 -VELEKLVQLSELDLSHNFLG 245 (673)
Q Consensus 226 -~~~~~l~~L~~L~ls~N~l~ 245 (673)
..+...++|+.|+|++|.|+
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHhCCCCCEEeccCCCCC
Confidence 12223344444444444444
No 403
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.41 E-value=6.1e-15 Score=152.35 Aligned_cols=169 Identities=17% Similarity=0.152 Sum_probs=123.7
Q ss_pred CCCCcEEEccCcccccccccccC-----CCCCccEEEccCCccccccccCcc-ccCCCcEEEcccCccCccCChhhh---
Q 005864 63 LASLNRVHLEQNHLTGNISEVFG-----IYPNLTFLDISHNNFYGEIWSSWG-KCQQLGTLNFSMNNITGSIPPEIG--- 133 (673)
Q Consensus 63 l~~L~~L~L~~n~i~~~~~~~~~-----~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~--- 133 (673)
+++|+.|+|++|.++......+. ..++|++|+|++|.++......+. .+++|+.|+|++|.++......+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 35788888888888755443332 236888999998888755444433 457888999999988765444442
Q ss_pred --cccccccccccccccccc----CCccccCCCCCCEEEccCcccccc----CCccccCCCCCCEEEeCCCCCCCc----
Q 005864 134 --KLYQLHKLDFSLNQIVGE----IPIELGNLKSLNYLVLNGNKLSGN----LPRVLGSLSELEYLDLSTNKLSGS---- 199 (673)
Q Consensus 134 --~l~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~---- 199 (673)
..++|++|+|++|.++.. ++..+..+++|++|+|++|.+++. ++..+...++|+.|+|++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 357799999999988742 344456788999999999999853 245667788999999999999753
Q ss_pred CCccccccccccEEEccCCcCccCCchhhhcc
Q 005864 200 IPETLGNLLKVHYLNLSNNQFRKEFPVELEKL 231 (673)
Q Consensus 200 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 231 (673)
++..+...++|++|+|++|.|+......+..+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~ 262 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDL 262 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence 33445567899999999999987655555543
No 404
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.30 E-value=8.7e-11 Score=122.31 Aligned_cols=268 Identities=11% Similarity=0.052 Sum_probs=165.9
Q ss_pred CcccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCcccccccccccCCCCC
Q 005864 10 PSVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPN 89 (673)
Q Consensus 10 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 89 (673)
+++....+|+.+.+.. .++.+...+|.++.+|+.++|.++ ++.+...+|.++ +|+.+.+.. .+..+...+|... +
T Consensus 40 ~~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~-~ 114 (379)
T 4h09_A 40 PWYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGT-D 114 (379)
T ss_dssp TTGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTC-C
T ss_pred cccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceeccC-C
Confidence 4566677888888875 466677888999999999998755 666677788887 677877764 4666777777764 7
Q ss_pred ccEEEccCCccccccccCccccCCCcEEEcccCccCccCChhhhcccccccccccccccc--------------------
Q 005864 90 LTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNITGSIPPEIGKLYQLHKLDFSLNQIV-------------------- 149 (673)
Q Consensus 90 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~-------------------- 149 (673)
|+.+.+..+ +..+...+|.++ +|+.+.+..+ ++.+...+|..+.+++.+.+..+...
T Consensus 115 L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (379)
T 4h09_A 115 LDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYP 191 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECC
T ss_pred cccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccc
Confidence 888888765 333555566554 4555555433 33344555555565555544432211
Q ss_pred ---------------ccCCccccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCccccccccccEEE
Q 005864 150 ---------------GEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNLLKVHYLN 214 (673)
Q Consensus 150 ---------------~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 214 (673)
......+..+.+|+.+.+..+ +......+|..+..|+.+.+..+ ++.....+|.++.+|+.+.
T Consensus 192 ~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~ 269 (379)
T 4h09_A 192 AAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLN 269 (379)
T ss_dssp TTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred ccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccc
Confidence 112233444455666665543 33244455666667777766654 4334455666666777776
Q ss_pred ccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCccccccCccccccCCCccEEEccC
Q 005864 215 LSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISY 289 (673)
Q Consensus 215 l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~ 289 (673)
+..+ ++.+....|.++.+|+.+.+.++.++......|.++.+|+.+.|..+ ++.+...+|.++.+|+.+.+..
T Consensus 270 l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 270 FYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp ECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 6543 44455556666777777777766666445556667777777777543 5555556677777777666543
No 405
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.29 E-value=1e-11 Score=122.34 Aligned_cols=146 Identities=14% Similarity=0.096 Sum_probs=114.1
Q ss_pred HHHhcCCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccC-CCcccceeeeeecCCee
Q 005864 398 IRATKNFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIR-HRNIVKFYGFCSHPRHS 476 (673)
Q Consensus 398 ~~~~~~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~ 476 (673)
......|.+....+.|+.+.||++... |+.+++|........ ....+.+|+.+++.+. +..+.++++++...+..
T Consensus 10 ~~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~---~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~ 85 (263)
T 3tm0_A 10 KKLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKG---TTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWS 85 (263)
T ss_dssp HHHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTT---STTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEE
T ss_pred HHHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCC---CHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCce
Confidence 344567888888999999999999864 789999998653211 1235788999999884 67788999999988899
Q ss_pred eEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcC--------------------------------
Q 005864 477 FLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDC-------------------------------- 524 (673)
Q Consensus 477 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~-------------------------------- 524 (673)
++||||++|.+|.+.+... .....++.+++++++.||+..
T Consensus 86 ~lv~e~i~G~~l~~~~~~~--------~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (263)
T 3tm0_A 86 NLLMSEADGVLCSEEYEDE--------QSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCEN 157 (263)
T ss_dssp EEEEECCSSEEHHHHCCTT--------TCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGG
T ss_pred EEEEEecCCeehhhccCCc--------ccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhcccccccccc
Confidence 9999999999998763211 123467889999999999810
Q ss_pred ------------------------CCCeEEecCCCCCeEeCCCCceEEeccccee
Q 005864 525 ------------------------FPPIVHRDISSKNVLLSSEYEARVSDFGIAK 555 (673)
Q Consensus 525 ------------------------~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~ 555 (673)
.+.++|+|++|.||+++++..+.|+||+.+.
T Consensus 158 ~~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~ 212 (263)
T 3tm0_A 158 WEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG 212 (263)
T ss_dssp GSTTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred ccccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence 0358999999999999876556799999875
No 406
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.29 E-value=3.6e-12 Score=131.09 Aligned_cols=102 Identities=25% Similarity=0.222 Sum_probs=52.5
Q ss_pred EEccCc-cccccCCccccCCCCCCEEEeCC-CCCCCcCCccccccccccEEEccCCcCccCCchhhhcccCCCeEeecCC
Q 005864 165 LVLNGN-KLSGNLPRVLGSLSELEYLDLST-NKLSGSIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHN 242 (673)
Q Consensus 165 L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N 242 (673)
++++++ +++ .+|. +..+++|+.|+|++ |.+++..+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455554 555 3444 55555555555553 5555444445555555555555555555555555555555555555555
Q ss_pred cCCCCCcccccCCCcccEEEecCcccc
Q 005864 243 FLGGEIPPQICNLESLEKLNVSHNNLS 269 (673)
Q Consensus 243 ~l~~~~~~~~~~l~~L~~L~l~~N~l~ 269 (673)
+|++..+..|..++ |+.|+|.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 55533333333333 555555555544
No 407
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.29 E-value=1.1e-11 Score=127.57 Aligned_cols=105 Identities=26% Similarity=0.310 Sum_probs=87.4
Q ss_pred CEEEeeCC-ccccCCCccccCCCCCCEEEccc-CccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEEcc
Q 005864 19 KGLYLYSN-SLSGSVPGEIGNLMQLTNLEIDN-NQLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDIS 96 (673)
Q Consensus 19 ~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 96 (673)
..++++++ +++ .+|. |..+++|+.|+|++ |.|++..+..|.++++|+.|+|++|+|+++++..|..+++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45688887 788 4666 88888899999986 88887777888888999999999999888888888888899999999
Q ss_pred CCccccccccCccccCCCcEEEcccCccCc
Q 005864 97 HNNFYGEIWSSWGKCQQLGTLNFSMNNITG 126 (673)
Q Consensus 97 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 126 (673)
+|+|+++++..|..+. |+.|+|.+|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9988877777777666 8888888888874
No 408
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.27 E-value=2.1e-10 Score=119.37 Aligned_cols=266 Identities=12% Similarity=0.062 Sum_probs=197.2
Q ss_pred CccccCCCcccCCCCCCEEEeeCCccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccCccccccccc
Q 005864 3 HLSGAIPPSVGNFTNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNHLTGNISE 82 (673)
Q Consensus 3 ~i~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~ 82 (673)
.|+.+-..+|.++.+|+.+.|..+ ++.+...+|.++ +|+.+.+.++ +..+...+|... +|+.+.+..+ +..+...
T Consensus 56 ~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~-~~~i~~~ 130 (379)
T 4h09_A 56 GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGA-TTEIGNY 130 (379)
T ss_dssp TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTT
T ss_pred CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccCCCc-ccccccc
Confidence 356666788999999999999865 776888899987 7888888765 554566677764 8999999765 4445566
Q ss_pred ccCCCCCccEEEccCCccccccccCccccCCCcEEEcccCcc-----------------------------------Ccc
Q 005864 83 VFGIYPNLTFLDISHNNFYGEIWSSWGKCQQLGTLNFSMNNI-----------------------------------TGS 127 (673)
Q Consensus 83 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-----------------------------------~~~ 127 (673)
+|.+. +|+.+.+..+ ++.+...+|..+..++.+.+..+.. ...
T Consensus 131 ~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 208 (379)
T 4h09_A 131 IFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTV 208 (379)
T ss_dssp TTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEE
T ss_pred ccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeEE
Confidence 66654 5666655443 4445566666666666665544321 112
Q ss_pred CChhhhccccccccccccccccccCCccccCCCCCCEEEccCccccccCCccccCCCCCCEEEeCCCCCCCcCCcccccc
Q 005864 128 IPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLGSLSELEYLDLSTNKLSGSIPETLGNL 207 (673)
Q Consensus 128 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 207 (673)
...++....+|+.+.+..+ +.......+..+..|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +.......|..+
T Consensus 209 ~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c 285 (379)
T 4h09_A 209 TAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGC 285 (379)
T ss_dssp CTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTC
T ss_pred eecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccc
Confidence 3345556667777777655 34466777889999999999876 66567778999999999999765 544666789999
Q ss_pred ccccEEEccCCcCccCCchhhhcccCCCeEeecCCcCCCCCcccccCCCcccEEEecCccccccCccccccCC
Q 005864 208 LKVHYLNLSNNQFRKEFPVELEKLVQLSELDLSHNFLGGEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMH 280 (673)
Q Consensus 208 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 280 (673)
++|+.+.+.++.++.+....|.++.+|+.+.|..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.++.
T Consensus 286 ~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 286 SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 99999999999999888889999999999999865 66455678999999999999765 6666667776653
No 409
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=99.16 E-value=5.5e-11 Score=116.92 Aligned_cols=137 Identities=17% Similarity=0.133 Sum_probs=101.1
Q ss_pred CCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCc--ccceeeeeecCCeeeEEE
Q 005864 403 NFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRN--IVKFYGFCSHPRHSFLVY 480 (673)
Q Consensus 403 ~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~l~~~~~~~~~~~lv~ 480 (673)
.+.+....+.|..+.||++...+|+.+++|..... ....+.+|+.+++.+++.+ +.+++++...++..++||
T Consensus 21 ~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~------~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~ 94 (264)
T 1nd4_A 21 GYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG------ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLL 94 (264)
T ss_dssp TCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC------TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEE
T ss_pred CCceEecccCCCCceEEEEecCCCCeEEEEeCCcc------cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEE
Confidence 34443333466679999998878889999987543 1245678999999885444 556888888888889999
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcC------------------------------------
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDC------------------------------------ 524 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~------------------------------------ 524 (673)
||++|.++. ... .+ ...++.++++.++.||+..
T Consensus 95 e~i~G~~l~--~~~------~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (264)
T 1nd4_A 95 GEVPGQDLL--SSH------LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQ 163 (264)
T ss_dssp ECCSSEETT--TSC------CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGT
T ss_pred EecCCcccC--cCc------CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhcc
Confidence 999998884 211 11 1256778888888888752
Q ss_pred -------------------CCCeEEecCCCCCeEeCCCCceEEecccceee
Q 005864 525 -------------------FPPIVHRDISSKNVLLSSEYEARVSDFGIAKF 556 (673)
Q Consensus 525 -------------------~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~ 556 (673)
.+.++|+|++|.||++++++.+.|+|||.+..
T Consensus 164 ~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~ 214 (264)
T 1nd4_A 164 GLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV 214 (264)
T ss_dssp TCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred CccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhccc
Confidence 01299999999999998776677999998763
No 410
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.10 E-value=3.9e-11 Score=122.69 Aligned_cols=84 Identities=17% Similarity=0.267 Sum_probs=42.5
Q ss_pred CCCCCEEEeCCCCCCCcCCcccc---ccccccEEEccCCcCccCC----chhhhcccCCCeEeecCCcCCCCCcccccCC
Q 005864 183 LSELEYLDLSTNKLSGSIPETLG---NLLKVHYLNLSNNQFRKEF----PVELEKLVQLSELDLSHNFLGGEIPPQICNL 255 (673)
Q Consensus 183 l~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l 255 (673)
+++|+.|+|++|.+.+..+..+. .+++|+.|+|+.|.+++.. +..+..+++|+.|+|++|.+++.....+...
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 45566666655555432222222 3556666666666665432 2223445666667776666654333333321
Q ss_pred CcccEEEecCcc
Q 005864 256 ESLEKLNVSHNN 267 (673)
Q Consensus 256 ~~L~~L~l~~N~ 267 (673)
- ...+++++|+
T Consensus 331 l-g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L-PMKIDVSDSQ 341 (362)
T ss_dssp C-CSEEECCSBC
T ss_pred c-CCEEEecCCc
Confidence 0 2446666665
No 411
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.08 E-value=5.3e-11 Score=121.66 Aligned_cols=159 Identities=18% Similarity=0.183 Sum_probs=103.5
Q ss_pred CChhhhccccccccccccccccccCCccccCCCCCCEEEccCccccccCCcccc--CCCCCCEEEeCC--CCCCCc----
Q 005864 128 IPPEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGNKLSGNLPRVLG--SLSELEYLDLST--NKLSGS---- 199 (673)
Q Consensus 128 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~--n~l~~~---- 199 (673)
+...+..+++|+.|+|++|.-. ..+. +. +++|++|+|..|.++......+. .+|+|+.|+|+. |...+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 3455667788888888877311 2222 33 68899999888887654333443 678899988853 221111
Q ss_pred -CCccc--cccccccEEEccCCcCccCCchhhh---cccCCCeEeecCCcCCCCC----cccccCCCcccEEEecCcccc
Q 005864 200 -IPETL--GNLLKVHYLNLSNNQFRKEFPVELE---KLVQLSELDLSHNFLGGEI----PPQICNLESLEKLNVSHNNLS 269 (673)
Q Consensus 200 -~~~~l--~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~ls~N~l~~~~----~~~~~~l~~L~~L~l~~N~l~ 269 (673)
+...+ ..+++|+.|+|++|.+.+..+..+. .+++|+.|+|+.|.+.+.. +..+..+++|+.|+|++|.++
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 11122 2478999999999988754444443 4778999999999887643 333456788999999999887
Q ss_pred ccCcccccc-CCCccEEEccCcc
Q 005864 270 GLIPSCFEG-MHGLSCIDISYNE 291 (673)
Q Consensus 270 ~~~~~~~~~-~~~L~~l~l~~N~ 291 (673)
...-..+.. + ...+++++++
T Consensus 321 d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 321 DEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHHHHc--CCEEEecCCc
Confidence 554444443 2 3567888776
No 412
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=99.07 E-value=4.8e-10 Score=115.70 Aligned_cols=143 Identities=16% Similarity=0.275 Sum_probs=107.1
Q ss_pred ccceeccCCcEEEEEEEeCCCCEEEEEeec--cchhhhhHHHHHHHHHHHHHhccC--CCcccceeeeeecC---CeeeE
Q 005864 406 AEQCIGIGGQASVYRGELPSGEVVAVKKFH--SLLLSEISVQREFLNEIKALTEIR--HRNIVKFYGFCSHP---RHSFL 478 (673)
Q Consensus 406 ~~~~ig~G~~g~vy~~~~~~~~~vavK~~~--~~~~~~~~~~~~~~~e~~~l~~l~--h~niv~l~~~~~~~---~~~~l 478 (673)
..+.++.|.++.||+.... +..+++|+.. .... ......+.+|+.+++.++ +..+.++++++.+. +..++
T Consensus 42 ~~~~l~~G~sn~~y~v~~~-~~~~vlr~~~~p~~~~--~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~ 118 (359)
T 3dxp_A 42 SVEQFKGGQSNPTFKLVTP-GQTYVMRAKPGPKSKL--LPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFY 118 (359)
T ss_dssp EEEECCC-CCSCEEEEECS-SCEEEEECCCC------------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEE
T ss_pred eEEEcCCcccceEEEEEEC-CceEEEEeCCCCCCCC--CCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEE
Confidence 4567999999999999875 4678899875 3211 112356788999999997 45688899988766 45899
Q ss_pred EEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcC----------------------------------
Q 005864 479 VYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDC---------------------------------- 524 (673)
Q Consensus 479 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~---------------------------------- 524 (673)
||||++|.++.+.. ...++...+..++.++++.|+.||+..
T Consensus 119 vme~v~G~~l~~~~-----~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (359)
T 3dxp_A 119 IMEFVSGRVLWDQS-----LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETES 193 (359)
T ss_dssp EEECCCCBCCCCTT-----CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSC
T ss_pred EEEecCCeecCCCc-----cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcC
Confidence 99999998875421 123567788889999999999999731
Q ss_pred ---------------------CCCeEEecCCCCCeEeCCCCc--eEEecccceee
Q 005864 525 ---------------------FPPIVHRDISSKNVLLSSEYE--ARVSDFGIAKF 556 (673)
Q Consensus 525 ---------------------~~~ivH~dlk~~Nill~~~~~--~kl~Dfg~~~~ 556 (673)
.+.++|+|+++.||++++++. +.|+||+.+..
T Consensus 194 ~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~ 248 (359)
T 3dxp_A 194 IPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL 248 (359)
T ss_dssp CHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred ChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence 247899999999999997753 68999999875
No 413
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.98 E-value=3.9e-10 Score=113.43 Aligned_cols=186 Identities=19% Similarity=0.189 Sum_probs=122.9
Q ss_pred cceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccC-CCc--ccceeeeeecCC---eeeEEE
Q 005864 407 EQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIR-HRN--IVKFYGFCSHPR---HSFLVY 480 (673)
Q Consensus 407 ~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~-h~n--iv~l~~~~~~~~---~~~lv~ 480 (673)
.+.++.|.+..||++. ..+++|+.... .....+.+|+++++.+. +.. +.+++.+...++ ..|+||
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~-----~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm 95 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPKHS-----RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGF 95 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEESSH-----HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEE
T ss_pred eEecCCCCcceEEEEC----CEEEEEecCCc-----chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEE
Confidence 4669999999999863 56889985432 23567889999998884 333 344555543333 347899
Q ss_pred ecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcC------------------------------------
Q 005864 481 ECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDC------------------------------------ 524 (673)
Q Consensus 481 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~------------------------------------ 524 (673)
|+++|.++.+... ..++..++..++.++++.++.||+..
T Consensus 96 ~~i~G~~l~~~~~-----~~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (304)
T 3sg8_A 96 TKIKGVPLTPLLL-----NNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQM 170 (304)
T ss_dssp ECCCCEECCHHHH-----HTSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHH
T ss_pred cccCCeECCcccc-----ccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccH
Confidence 9999988875432 22566777788888888888888621
Q ss_pred -------------------CCCeEEecCCCCCeEeCC--CCceEEecccceeecCCCCCCce--ec---c---------c
Q 005864 525 -------------------FPPIVHRDISSKNVLLSS--EYEARVSDFGIAKFLKPGSSNWT--EF---A---------G 569 (673)
Q Consensus 525 -------------------~~~ivH~dlk~~Nill~~--~~~~kl~Dfg~~~~~~~~~~~~~--~~---~---------~ 569 (673)
.+.++|+|++|.||++++ +..+.|+||+.+..-.+...... .. . .
T Consensus 171 ~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~ 250 (304)
T 3sg8_A 171 KKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILN 250 (304)
T ss_dssp HHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHH
Confidence 135799999999999998 45678999999876432110000 00 0 0
Q ss_pred cccccc-ccccccCCcCcchhHHHHHHHHHHHHhCCCCCc
Q 005864 570 TFGYVA-PELAYTMKVTEKCDVYSFGVLALEVIKGKHPRD 608 (673)
Q Consensus 570 ~~~y~a-PE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~ 608 (673)
..+... |+.... .....+.|++|.++|++.+|+.+|-
T Consensus 251 ~Y~~~~~~~~~~r--~~~~~~~~~l~~~~~~~~~g~~~~~ 288 (304)
T 3sg8_A 251 HYKHKDIPTVLEK--YRMKEKYWSFEKIIYGKEYGYMDWY 288 (304)
T ss_dssp HHTCSCHHHHHHH--HHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCCCcHHHHHH--HHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 001111 221111 1223689999999999999998853
No 414
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.78 E-value=2.9e-08 Score=100.37 Aligned_cols=138 Identities=17% Similarity=0.149 Sum_probs=102.2
Q ss_pred CCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCC----CcccceeeeeecCCeeeE
Q 005864 403 NFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRH----RNIVKFYGFCSHPRHSFL 478 (673)
Q Consensus 403 ~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h----~niv~l~~~~~~~~~~~l 478 (673)
.....+.++.|....||+. |+.+++|+.... .....+.+|.+++..+.+ ..+.+++++ +..++
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g~~~vlR~~~~~-----~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~----~~~~l 104 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----NEQYVVKVPKRD-----SVRISQKRELELYRFLENCKLSYQIPAVVYQ----SDRFN 104 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----TTTEEEEEESSH-----HHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE----CSSCE
T ss_pred ceEEEEeCCCCCCceEEEE----CCEEEEEeCCcH-----HHHHHHHHHHHHHHHHHhcCCCCCcceEEec----CCcEE
Confidence 6667788999999999998 677899976432 123458899999988865 223455554 56789
Q ss_pred EEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCC---------------------------------
Q 005864 479 VYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCF--------------------------------- 525 (673)
Q Consensus 479 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~--------------------------------- 525 (673)
||||++|.++.+... ..++..++..++.++++.++.||+...
T Consensus 105 vme~i~G~~l~~~~~-----~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (320)
T 3r70_A 105 IMKYIKGERITYEQY-----HKLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLISILEKEQ 179 (320)
T ss_dssp EEECCCCBCCCHHHH-----TTSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeecCCcccccccc-----ccCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHHHHHHHHHhhcc
Confidence 999999998874332 124556667778888888888885422
Q ss_pred ---------------------------CCeEEecCCCCCeEeCCCCceEEecccceeecC
Q 005864 526 ---------------------------PPIVHRDISSKNVLLSSEYEARVSDFGIAKFLK 558 (673)
Q Consensus 526 ---------------------------~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~ 558 (673)
+.++|+|++|.||+++++..+.|+||+.+..-.
T Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~~~ 239 (320)
T 3r70_A 180 LLTDEMLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNVGD 239 (320)
T ss_dssp CCCHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEEEC
T ss_pred cccccchHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCcccccCC
Confidence 245999999999999987667999999987543
No 415
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.69 E-value=4e-09 Score=97.19 Aligned_cols=91 Identities=12% Similarity=0.134 Sum_probs=44.2
Q ss_pred cccCCCCCCEEEcccC-ccccc----cCccccCCCCCcEEEccCccccccc----ccccCCCCCccEEEccCCcccccc-
Q 005864 35 EIGNLMQLTNLEIDNN-QLFGQ----IPRSLRNLASLNRVHLEQNHLTGNI----SEVFGIYPNLTFLDISHNNFYGEI- 104 (673)
Q Consensus 35 ~~~~l~~L~~L~L~~n-~i~~~----~~~~l~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~i~~~~- 104 (673)
.+...++|++|+|++| .|... +..++...++|++|+|++|.|+... ...+...++|++|+|++|.|+...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3445556666666665 55432 2233444555566666665555322 223334455555555555555332
Q ss_pred ---ccCccccCCCcEEEc--ccCccC
Q 005864 105 ---WSSWGKCQQLGTLNF--SMNNIT 125 (673)
Q Consensus 105 ---~~~~~~l~~L~~L~L--~~n~l~ 125 (673)
..++...++|++|+| ++|.|+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCC
Confidence 223333444555555 445544
No 416
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.68 E-value=1.6e-09 Score=99.88 Aligned_cols=118 Identities=13% Similarity=0.153 Sum_probs=93.2
Q ss_pred CCCcccCCCCCCEEEeeCC-ccccC----CCccccCCCCCCEEEcccCcccccc----CccccCCCCCcEEEccCccccc
Q 005864 8 IPPSVGNFTNLKGLYLYSN-SLSGS----VPGEIGNLMQLTNLEIDNNQLFGQI----PRSLRNLASLNRVHLEQNHLTG 78 (673)
Q Consensus 8 ~p~~~~~l~~L~~L~L~~n-~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~----~~~l~~l~~L~~L~L~~n~i~~ 78 (673)
+...+...+.|++|+|++| .|... +...+...++|++|+|++|.|.+.. ...+...++|++|+|++|.|+.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 4455678899999999999 88743 3445677899999999999998543 4556667899999999999995
Q ss_pred c----cccccCCCCCccEEEc--cCCcccccccc----CccccCCCcEEEcccCccC
Q 005864 79 N----ISEVFGIYPNLTFLDI--SHNNFYGEIWS----SWGKCQQLGTLNFSMNNIT 125 (673)
Q Consensus 79 ~----~~~~~~~l~~L~~L~L--~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~ 125 (673)
. ....+...++|++|+| ++|.|+..... .+...++|++|+|++|.+.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4 3566778899999999 88999865433 3445588888888888876
No 417
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=98.54 E-value=4.8e-07 Score=89.03 Aligned_cols=136 Identities=15% Similarity=0.185 Sum_probs=99.5
Q ss_pred ceeccCCcE-EEEEEEeC-CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccC-CCcccceeeeeecCCeeeEEEeccc
Q 005864 408 QCIGIGGQA-SVYRGELP-SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIR-HRNIVKFYGFCSHPRHSFLVYECLE 484 (673)
Q Consensus 408 ~~ig~G~~g-~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~ 484 (673)
+.+..|..| .||+.... ++..+++|+-... ....+.+|...|+.+. +--+.++++++.+++..++|||+++
T Consensus 30 ~~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~------~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~ 103 (272)
T 4gkh_A 30 ARDNVGQSGATIYRLYGKPNAPELFLKHGKGS------VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIP 103 (272)
T ss_dssp EEEECSSSSCEEEEEECCTTCCCEEEEEEETH------HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCC
T ss_pred EEccCCCcCCeEEEEEecCCCeEEEEEECCCC------CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeC
Confidence 345667666 68998765 4678999985432 2456788999998884 4346788999998899999999999
Q ss_pred CCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCC---------------------------------------
Q 005864 485 RGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCF--------------------------------------- 525 (673)
Q Consensus 485 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~--------------------------------------- 525 (673)
|.++.+...... .....++.++++.++.||....
T Consensus 104 G~~~~~~~~~~~-------~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (272)
T 4gkh_A 104 GKTAFQVLEEYP-------DSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPV 176 (272)
T ss_dssp SEEHHHHHHHCG-------GGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCH
T ss_pred CccccccccCCH-------HHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHH
Confidence 988877654321 1233466677777777775311
Q ss_pred ----------------CCeEEecCCCCCeEeCCCCceEEecccceee
Q 005864 526 ----------------PPIVHRDISSKNVLLSSEYEARVSDFGIAKF 556 (673)
Q Consensus 526 ----------------~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~ 556 (673)
+.++|+|+.+.||++++++.+-|+||+.+..
T Consensus 177 ~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~ 223 (272)
T 4gkh_A 177 EQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI 223 (272)
T ss_dssp HHHHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred HHHHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECccccc
Confidence 2378999999999999877777999998863
No 418
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=98.45 E-value=1.4e-06 Score=87.10 Aligned_cols=137 Identities=17% Similarity=0.129 Sum_probs=95.4
Q ss_pred cceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCC---cccceeeeee-cCCeeeEEEec
Q 005864 407 EQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHR---NIVKFYGFCS-HPRHSFLVYEC 482 (673)
Q Consensus 407 ~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~---niv~l~~~~~-~~~~~~lv~e~ 482 (673)
.+.++.|....||+. |+.+++|+... ......+.+|.+++..+++. .+.+++.++. ..+..++||||
T Consensus 24 v~~l~~G~~n~v~~v----g~~~VlR~~~~-----~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~ 94 (306)
T 3tdw_A 24 VESLGEGFRNYAILV----NGDWVFRFPKS-----QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRK 94 (306)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEESS-----HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEEC
T ss_pred eeecCCCcceeEEEE----CCEEEEEecCC-----chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEec
Confidence 456899999999998 67788887432 12356788999999999753 3556677764 45567899999
Q ss_pred ccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhc---------------------------------------
Q 005864 483 LERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHD--------------------------------------- 523 (673)
Q Consensus 483 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~--------------------------------------- 523 (673)
++|.++.+..-. .++...+..++.++++.|+.||+.
T Consensus 95 i~G~~l~~~~~~-----~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~ 169 (306)
T 3tdw_A 95 VQGQILGEDGMA-----VLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLR 169 (306)
T ss_dssp CCSEECHHHHHT-----TSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHH
T ss_pred cCCeECchhhhh-----hCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhH
Confidence 999888763211 123344444555555555555542
Q ss_pred ------------------CCCCeEEecCCCCCeEeCC---CCc-eEEecccceeec
Q 005864 524 ------------------CFPPIVHRDISSKNVLLSS---EYE-ARVSDFGIAKFL 557 (673)
Q Consensus 524 ------------------~~~~ivH~dlk~~Nill~~---~~~-~kl~Dfg~~~~~ 557 (673)
..+.++|+|+++.||++++ ++. +.|+||+.+..-
T Consensus 170 ~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~g 225 (306)
T 3tdw_A 170 DYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAIS 225 (306)
T ss_dssp HHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEEE
T ss_pred HHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCCC
Confidence 2235699999999999997 355 589999988753
No 419
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.43 E-value=8.3e-08 Score=85.89 Aligned_cols=84 Identities=10% Similarity=0.091 Sum_probs=57.0
Q ss_pred CCCCEEEcccCccccccCccccCCCCCcEEEccCcc-cccccccccCCC----CCccEEEccCCc-cccccccCccccCC
Q 005864 40 MQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQNH-LTGNISEVFGIY----PNLTFLDISHNN-FYGEIWSSWGKCQQ 113 (673)
Q Consensus 40 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~-i~~~~~~~~~~l----~~L~~L~L~~n~-i~~~~~~~~~~l~~ 113 (673)
.+|+.|||++|.|++.....+.++++|++|+|++|. |+......++.+ ++|++|+|++|. |++.....++.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 457777777777766666666777777777777773 665555555554 367777777763 76666666677777
Q ss_pred CcEEEcccCc
Q 005864 114 LGTLNFSMNN 123 (673)
Q Consensus 114 L~~L~L~~n~ 123 (673)
|++|+|+++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777764
No 420
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.42 E-value=1.6e-08 Score=97.80 Aligned_cols=78 Identities=28% Similarity=0.317 Sum_probs=38.2
Q ss_pred cccccEEEccCCcCccC--CchhhhcccCCCeEeecCCcCCCCCcccccCCC--cccEEEecCccccccCc-------cc
Q 005864 207 LLKVHYLNLSNNQFRKE--FPVELEKLVQLSELDLSHNFLGGEIPPQICNLE--SLEKLNVSHNNLSGLIP-------SC 275 (673)
Q Consensus 207 l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~--~L~~L~l~~N~l~~~~~-------~~ 275 (673)
+++|+.|+|++|+|+++ ++..+..+++|+.|+|++|.|.+. ..+..+. +|++|+|++|.+.+..| ..
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 34444444444444432 223344455555555555555432 1222222 56666666666654333 23
Q ss_pred cccCCCccEEE
Q 005864 276 FEGMHGLSCID 286 (673)
Q Consensus 276 ~~~~~~L~~l~ 286 (673)
+..+|+|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 55667777665
No 421
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.41 E-value=1.1e-07 Score=92.06 Aligned_cols=80 Identities=30% Similarity=0.374 Sum_probs=49.5
Q ss_pred cCCCCCCEEEeCCCCCCC--cCCccccccccccEEEccCCcCccCCchhhhccc--CCCeEeecCCcCCCCCcc------
Q 005864 181 GSLSELEYLDLSTNKLSG--SIPETLGNLLKVHYLNLSNNQFRKEFPVELEKLV--QLSELDLSHNFLGGEIPP------ 250 (673)
Q Consensus 181 ~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~ls~N~l~~~~~~------ 250 (673)
.++++|+.|+|++|.|++ .++..+..+++|+.|+|++|+|++. ..+..+. +|+.|+|++|++.+..|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 346667777777777765 3345556677777777777777654 2333333 677777777777654442
Q ss_pred -cccCCCcccEEE
Q 005864 251 -QICNLESLEKLN 262 (673)
Q Consensus 251 -~~~~l~~L~~L~ 262 (673)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 355667777665
No 422
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=98.39 E-value=1.1e-06 Score=86.98 Aligned_cols=76 Identities=20% Similarity=0.179 Sum_probs=59.9
Q ss_pred ccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCC---cccceeeeeecCCeeeEEEec
Q 005864 406 AEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHR---NIVKFYGFCSHPRHSFLVYEC 482 (673)
Q Consensus 406 ~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~---niv~l~~~~~~~~~~~lv~e~ 482 (673)
..+.++.|.++.||++...+|+.++||+..... ......|.+|++.++.+++. .+.+++++. ..++||||
T Consensus 19 ~~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~---~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~----~~~lvme~ 91 (288)
T 3d1u_A 19 AVAERGHSHRWHLYRVELADGTPLFVKALPDDA---PALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEW 91 (288)
T ss_dssp EEEEEEEETTEEEEEEEETTSCEEEEEECCTTC---CCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEEC
T ss_pred ceeeeCCcchhheEEEEeCCCCeEEEEecCCCC---cchhHHHHHHHHHHHHHHhcCCCCcCeEEEec----CcEEEEEe
Confidence 456799999999999998899999999864321 11235688999999999765 577777764 36899999
Q ss_pred ccCCCh
Q 005864 483 LERGSL 488 (673)
Q Consensus 483 ~~~gsL 488 (673)
++++++
T Consensus 92 l~g~~~ 97 (288)
T 3d1u_A 92 VDERPP 97 (288)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 999875
No 423
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.36 E-value=1.4e-07 Score=84.38 Aligned_cols=84 Identities=11% Similarity=0.077 Sum_probs=53.4
Q ss_pred CCCCEEEeeCCccccCCCccccCCCCCCEEEcccC-ccccccCccccCC----CCCcEEEccCcc-cccccccccCCCCC
Q 005864 16 TNLKGLYLYSNSLSGSVPGEIGNLMQLTNLEIDNN-QLFGQIPRSLRNL----ASLNRVHLEQNH-LTGNISEVFGIYPN 89 (673)
Q Consensus 16 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~l~~l----~~L~~L~L~~n~-i~~~~~~~~~~l~~ 89 (673)
..|++|+|++|.|+......+.++++|+.|+|++| +|++..-..++.+ ++|++|+|++|. |+......+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 45677777777766665666666777777777776 3665555555553 357777777663 66555555666677
Q ss_pred ccEEEccCCc
Q 005864 90 LTFLDISHNN 99 (673)
Q Consensus 90 L~~L~L~~n~ 99 (673)
|++|+|+++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777653
No 424
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=98.31 E-value=2.5e-06 Score=87.43 Aligned_cols=145 Identities=12% Similarity=0.167 Sum_probs=91.6
Q ss_pred CCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCc--ccceeeeeecC-CeeeEEE
Q 005864 404 FDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRN--IVKFYGFCSHP-RHSFLVY 480 (673)
Q Consensus 404 ~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~l~~~~~~~-~~~~lv~ 480 (673)
....+.++.|....+|+... +|+.+++|..... ..+..|..++..+.... +.++++++... +..++||
T Consensus 43 ~~~i~~l~gG~~n~~y~v~~-~g~~~vlK~~~~~--------~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~~g~~~lv~ 113 (362)
T 3ovc_A 43 VSDLMQLSEGEESRAFSFDV-GGRGYVLRVNSCA--------DGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCIS 113 (362)
T ss_dssp CEEEEEEEECSSEEEEEEEE-TTEEEEEEEESCC--------HHHHHHHHHHHHHCCSSSCCCCEEEEEESSSSCEEEEE
T ss_pred CceEEECCCCCcceEEEEEE-CCcEEEEEeCCch--------hhHHHHHHHHHHHHhcCCCCceEEEeccCCCCCeEEEE
Confidence 33456789999999999986 5888999986432 24778888888886433 56677777654 5689999
Q ss_pred ecccCCChHHH------------------HhcCCCCc--------------cchHHHH---------------------H
Q 005864 481 ECLERGSLAEI------------------LSNDGSIK--------------EFSWIVR---------------------T 507 (673)
Q Consensus 481 e~~~~gsL~~~------------------l~~~~~~~--------------~l~~~~~---------------------~ 507 (673)
||++|.++.+. ++...... .-+|... .
T Consensus 114 e~l~G~~l~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~gl~~~~~~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~~~~~ 193 (362)
T 3ovc_A 114 RRAQGVTLQDLPETELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQTVMDDTVSA 193 (362)
T ss_dssp ECCCSEETTTSCGGGSGGGHHHHHHHHHHHHHCCCTTCBCEEEECTTSBEEESSHHHHHHGGGCTTTCCHHHHCCTTTHH
T ss_pred EecCCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCccccCccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99998765421 11110000 0011111 0
Q ss_pred HHHHHHHHHHHHHhhcC-CCCeEEecCCCCCeEeCCCCceEEecccceeec
Q 005864 508 NVIKSVANALSYMHHDC-FPPIVHRDISSKNVLLSSEYEARVSDFGIAKFL 557 (673)
Q Consensus 508 ~i~~~i~~~l~~LH~~~-~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~ 557 (673)
.....+.....++.... .+.++|+|+.+.||++++++.+.|+||+.+..-
T Consensus 194 ~~~~~~~~l~~~l~~lp~~~~l~HgDl~~~Nil~~~~~~~~viD~~~~~~g 244 (362)
T 3ovc_A 194 SVAQALDELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMFG 244 (362)
T ss_dssp HHHHHHHHHHHHGGGCCCCCEEECSSCSSTTEEEETTEEEEECCCTTCEEE
T ss_pred cchHHHHHHHHHHhhCCCCcEEEeCCCCCCeEEEeCCCEEEEECCcccccC
Confidence 11112222223332211 146899999999999987777889999998754
No 425
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=98.22 E-value=1.8e-06 Score=88.71 Aligned_cols=84 Identities=5% Similarity=-0.021 Sum_probs=56.3
Q ss_pred ccee-ccCCcEEEEEEEeC-------CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccC-C--CcccceeeeeecC--
Q 005864 407 EQCI-GIGGQASVYRGELP-------SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIR-H--RNIVKFYGFCSHP-- 473 (673)
Q Consensus 407 ~~~i-g~G~~g~vy~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~-h--~niv~l~~~~~~~-- 473 (673)
.+.| +.|....+|+.... +++.+++|+..............+.+|+.+++.++ + ..+.++++++.+.
T Consensus 25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~ 104 (357)
T 3ats_A 25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV 104 (357)
T ss_dssp EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT
T ss_pred EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc
Confidence 3567 89999999998764 26789999865432000000134667888888884 3 3567788887655
Q ss_pred -CeeeEEEecccCCChHH
Q 005864 474 -RHSFLVYECLERGSLAE 490 (673)
Q Consensus 474 -~~~~lv~e~~~~gsL~~ 490 (673)
+..++||||++|.++.+
T Consensus 105 ~g~~~~v~e~l~G~~l~~ 122 (357)
T 3ats_A 105 LGTPFFLMDYVEGVVPPD 122 (357)
T ss_dssp TSSCEEEEECCCCBCCCB
T ss_pred cCCceEEEEecCCCChhh
Confidence 35689999999877653
No 426
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=98.04 E-value=1.6e-05 Score=82.91 Aligned_cols=78 Identities=17% Similarity=0.037 Sum_probs=49.4
Q ss_pred cceeccCCcEEEEEEEeC-CCCEEEEEeeccchh--hh--hHHHHHHHHHHHHHhccCC--Ccc-cceeeeeecCCeeeE
Q 005864 407 EQCIGIGGQASVYRGELP-SGEVVAVKKFHSLLL--SE--ISVQREFLNEIKALTEIRH--RNI-VKFYGFCSHPRHSFL 478 (673)
Q Consensus 407 ~~~ig~G~~g~vy~~~~~-~~~~vavK~~~~~~~--~~--~~~~~~~~~e~~~l~~l~h--~ni-v~l~~~~~~~~~~~l 478 (673)
.+.+|.|.++.||++... +++.|+||....... .. ......+..|.+++..+.. |.. .+++.+ +.+..++
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l 112 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT 112 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence 467999999999999764 478899998653221 00 0113456678888887742 443 455544 3445689
Q ss_pred EEecccCC
Q 005864 479 VYECLERG 486 (673)
Q Consensus 479 v~e~~~~g 486 (673)
||||+++.
T Consensus 113 vmE~l~g~ 120 (397)
T 2olc_A 113 VMEDLSHL 120 (397)
T ss_dssp EECCCTTS
T ss_pred EEEeCCCc
Confidence 99999874
No 427
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=97.94 E-value=4.3e-05 Score=76.04 Aligned_cols=138 Identities=17% Similarity=0.181 Sum_probs=92.5
Q ss_pred cceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccC---CCcccceeeeeecCCeeeEEEecc
Q 005864 407 EQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIR---HRNIVKFYGFCSHPRHSFLVYECL 483 (673)
Q Consensus 407 ~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~---h~niv~l~~~~~~~~~~~lv~e~~ 483 (673)
.+.|+.|....+|+... ++..+++|+.... ....+..|.+.|+.+. ...+.++++++...+..++||||+
T Consensus 41 ~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~------~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l 113 (312)
T 3jr1_A 41 KEKLYSGEMNEIWLIND-EVQTVFVKINERS------YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEAL 113 (312)
T ss_dssp EEEECCSSSSEEEEEES-SSCEEEEEEEEGG------GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECC
T ss_pred eEEeCCccceeeeEEEE-CCCeEEEEeCCcc------cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEec
Confidence 46699999999999987 5778889986532 2456888999998884 367888999988888899999999
Q ss_pred cCCChHH-----------HHhcCCCCc-------------------cchHHHHH---HHHH----------------HHH
Q 005864 484 ERGSLAE-----------ILSNDGSIK-------------------EFSWIVRT---NVIK----------------SVA 514 (673)
Q Consensus 484 ~~gsL~~-----------~l~~~~~~~-------------------~l~~~~~~---~i~~----------------~i~ 514 (673)
++..+.. .++...... .-+|.... ++.. .+.
T Consensus 114 ~G~~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~ 193 (312)
T 3jr1_A 114 NKSKNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIV 193 (312)
T ss_dssp CCCCCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHH
T ss_pred cCCCCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 9986521 123221100 11344321 1111 111
Q ss_pred H-HHHHHhh-cCCCCeEEecCCCCCeEeCCCCceEEeccc
Q 005864 515 N-ALSYMHH-DCFPPIVHRDISSKNVLLSSEYEARVSDFG 552 (673)
Q Consensus 515 ~-~l~~LH~-~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg 552 (673)
. ....|.. ...+.++|+|+.+.|++++.++ +.|.|++
T Consensus 194 ~~l~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~ 232 (312)
T 3jr1_A 194 QIVADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA 232 (312)
T ss_dssp HHHHHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred HHHHHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence 1 1223432 2246899999999999999887 8899974
No 428
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=97.91 E-value=3.1e-05 Score=78.87 Aligned_cols=141 Identities=21% Similarity=0.262 Sum_probs=78.7
Q ss_pred ceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCC--Ccccceee------eeecCCeeeEE
Q 005864 408 QCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRH--RNIVKFYG------FCSHPRHSFLV 479 (673)
Q Consensus 408 ~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h--~niv~l~~------~~~~~~~~~lv 479 (673)
+.++.|..+.||+....+| .+++|+..... ..+..|..++..+.. -.+.+++. +....+..+++
T Consensus 38 ~~l~gG~~n~~~~v~~~~~-~~vlk~~~~~~-------~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l 109 (346)
T 2q83_A 38 DVIQGNQMALVWKVHTDSG-AVCLKRIHRPE-------KKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVV 109 (346)
T ss_dssp EECC----CEEEEEEETTE-EEEEEEECSCH-------HHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEE
T ss_pred eeccccccCcEEEEEeCCC-CEEEEecCCCH-------HHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEE
Confidence 4466678999999987555 58999886521 222334444444421 12333332 12345678899
Q ss_pred EecccCCChH--------------HHHhcCC-----CC------ccchHHHH----------------------------
Q 005864 480 YECLERGSLA--------------EILSNDG-----SI------KEFSWIVR---------------------------- 506 (673)
Q Consensus 480 ~e~~~~gsL~--------------~~l~~~~-----~~------~~l~~~~~---------------------------- 506 (673)
+||++|.++. ..++... .. ....|...
T Consensus 110 ~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 189 (346)
T 2q83_A 110 YDWIEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYL 189 (346)
T ss_dssp EECCCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred EEeecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 9999986542 1111110 00 00122110
Q ss_pred ---HHHHHHHHHHHHHHhh----------cCCCCeEEecCCCCCeEeCCCCceEEecccceee
Q 005864 507 ---TNVIKSVANALSYMHH----------DCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKF 556 (673)
Q Consensus 507 ---~~i~~~i~~~l~~LH~----------~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~ 556 (673)
..+...+..++++|++ ...+.++|+|+.+.||+++.++.+.|+||+.+..
T Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~~ 252 (346)
T 2q83_A 190 QEIDGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVSF 252 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhccc
Confidence 0111224446666763 1234899999999999998888999999998853
No 429
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.89 E-value=4.4e-06 Score=76.21 Aligned_cols=66 Identities=15% Similarity=0.250 Sum_probs=31.5
Q ss_pred cCCCCCCEEEcccC-ccccc----cCccccCCCCCcEEEccCccccccc----ccccCCCCCccEEEccCCcccc
Q 005864 37 GNLMQLTNLEIDNN-QLFGQ----IPRSLRNLASLNRVHLEQNHLTGNI----SEVFGIYPNLTFLDISHNNFYG 102 (673)
Q Consensus 37 ~~l~~L~~L~L~~n-~i~~~----~~~~l~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~i~~ 102 (673)
.+-+.|+.|+|++| +|.+. +.+++..-+.|+.|+|++|+|+... .+++...+.|++|+|++|.|+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 33445555555553 44421 2234444455555555555555222 2233344555555555555543
No 430
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.85 E-value=3.8e-06 Score=76.61 Aligned_cols=119 Identities=10% Similarity=0.064 Sum_probs=62.5
Q ss_pred cccCCCCCcEEEccCc-ccccc----cccccCCCCCccEEEccCCccccccccCcc----ccCCCcEEEcccCccCccCC
Q 005864 59 SLRNLASLNRVHLEQN-HLTGN----ISEVFGIYPNLTFLDISHNNFYGEIWSSWG----KCQQLGTLNFSMNNITGSIP 129 (673)
Q Consensus 59 ~l~~l~~L~~L~L~~n-~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~ 129 (673)
.+.+-+.|++|+|++| +|+.. ..+++...+.|+.|+|++|.|......+++ .-+.|++|+|+.|.|+....
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3344556666666664 55532 234455556666666666666544443333 22445555555555443211
Q ss_pred hhhhccccccccccccccccccCCccccCCCCCCEEEccCc---cccc----cCCccccCCCCCCEEEeCCCCCC
Q 005864 130 PEIGKLYQLHKLDFSLNQIVGEIPIELGNLKSLNYLVLNGN---KLSG----NLPRVLGSLSELEYLDLSTNKLS 197 (673)
Q Consensus 130 ~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n---~l~~----~~~~~l~~l~~L~~L~l~~n~l~ 197 (673)
. .+...+..-+.|++|+|++| .+.. .+.+.+..-+.|+.|+++.|.+.
T Consensus 116 ~--------------------ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 116 A--------------------RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp H--------------------HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred H--------------------HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 1 12233444566777777654 3332 23345566677888887766543
No 431
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=97.81 E-value=5.4e-05 Score=74.87 Aligned_cols=79 Identities=19% Similarity=0.176 Sum_probs=56.2
Q ss_pred CCCccceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCC---cccceeeeeecCCeeeEE
Q 005864 403 NFDAEQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHR---NIVKFYGFCSHPRHSFLV 479 (673)
Q Consensus 403 ~~~~~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~---niv~l~~~~~~~~~~~lv 479 (673)
....++.+|.|..+.||+.+..+|+.|++|+....... ....|..|+..|+.+.-. -+.+++++. ..++|
T Consensus 16 ~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~---~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~----~~~lv 88 (288)
T 3f7w_A 16 EVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPA---LDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLA 88 (288)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCC---CTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEE
T ss_pred CeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcc---hhhHHHHHHHHHHHHHhhCCCCcceEEecc----CceEE
Confidence 45556789999999999999999999999986543211 234577899999888421 244455442 34789
Q ss_pred EecccCCCh
Q 005864 480 YECLERGSL 488 (673)
Q Consensus 480 ~e~~~~gsL 488 (673)
|||++++..
T Consensus 89 ~e~l~~~~~ 97 (288)
T 3f7w_A 89 MEWVDERPP 97 (288)
T ss_dssp EECCCCCCC
T ss_pred EEeecccCC
Confidence 999987653
No 432
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=97.79 E-value=0.00015 Score=75.97 Aligned_cols=76 Identities=13% Similarity=0.165 Sum_probs=46.8
Q ss_pred CCeEEecCCCCCeEeCCCCceEEecccceeecCCCCCCceeccc--ccccccccccccC---CcCcchhHHHHHHHHHHH
Q 005864 526 PPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPGSSNWTEFAG--TFGYVAPELAYTM---KVTEKCDVYSFGVLALEV 600 (673)
Q Consensus 526 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~--~~~y~aPE~~~~~---~~~~~~Dv~slG~il~el 600 (673)
+.++|+|+++.||++++++ ++++||+.+..-.+.... ..... ...|++|+..... ......++.+....+|+.
T Consensus 232 ~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~p~~Dl-a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (420)
T 2pyw_A 232 QALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGPMGFDI-GAYLGNLILAFFAQDGHATQENDRKEYKQWILRTIEQTWNL 309 (420)
T ss_dssp CEEECSCCSGGGEEECSSC-EEECCCTTCEEECHHHHH-HHHHHHHHHHHHHGGGGCCSSCCSHHHHHHHHHHHHHHHHH
T ss_pred CeEEecCCCCCcEEEeCCC-CEEEeCcccccCchHHHH-HHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHHH
Confidence 4899999999999999876 999999998753221110 11111 1346666654311 112234555777777777
Q ss_pred HhC
Q 005864 601 IKG 603 (673)
Q Consensus 601 ~~g 603 (673)
+++
T Consensus 310 y~~ 312 (420)
T 2pyw_A 310 FNK 312 (420)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 433
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=97.43 E-value=0.00056 Score=67.95 Aligned_cols=71 Identities=13% Similarity=0.002 Sum_probs=44.6
Q ss_pred cceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcc-cceeeeeecCCeeeEEEecc-c
Q 005864 407 EQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNI-VKFYGFCSHPRHSFLVYECL-E 484 (673)
Q Consensus 407 ~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~-~ 484 (673)
.+.|+.|....+|+. +.+++|+....... .....+|+.+++.+....+ .++++++ ++.-++++||+ +
T Consensus 23 i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~~----~~~r~~E~~~l~~l~~~g~~P~~~~~~--~~~~~~v~e~i~~ 91 (301)
T 3dxq_A 23 PLERLGGLTNLVFRA-----GDLCLRIPGKGTEE----YINRANEAVAAREAAKAGVSPEVLHVD--PATGVMVTRYIAG 91 (301)
T ss_dssp CEEEESCSSEEEEEE-----TTEEEEEECC--------CCCHHHHHHHHHHHHHTTSSCCEEEEC--TTTCCEEEECCTT
T ss_pred eeEcCCcccccccee-----eeEEEECCCCCccc----eeCHHHHHHHHHHHHHcCCCCceEEEE--CCCCEEEEeecCC
Confidence 678999999999999 56888987543111 1112457777777642223 4555543 33457899999 6
Q ss_pred CCCh
Q 005864 485 RGSL 488 (673)
Q Consensus 485 ~gsL 488 (673)
+.++
T Consensus 92 g~~l 95 (301)
T 3dxq_A 92 AQTM 95 (301)
T ss_dssp CEEC
T ss_pred CccC
Confidence 5444
No 434
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=97.40 E-value=0.00048 Score=69.20 Aligned_cols=159 Identities=12% Similarity=0.117 Sum_probs=88.9
Q ss_pred ccHHHHHHHhcCCCcc-----ceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCc--cc
Q 005864 392 IVYEEIIRATKNFDAE-----QCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRN--IV 464 (673)
Q Consensus 392 ~~~~~~~~~~~~~~~~-----~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv 464 (673)
++.+++......|... +.|+.|....+|+....+| .+++|...... ....+..|+.++..++... +.
T Consensus 7 ~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~~-----~~~~l~~e~~~l~~L~~~g~~vP 80 (322)
T 2ppq_A 7 ITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKRV-----EKNDLPFFLGLMQHLAAKGLSCP 80 (322)
T ss_dssp CCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC--------CCHHHHHHHHHHHHHHTTCCCC
T ss_pred CCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCCC-----CHHHHHHHHHHHHHHHHCCCCCC
Confidence 4556666666667653 3467788899999987655 68899876521 1223445677766663212 23
Q ss_pred ceeee------eecCCeeeEEEecccCCChHH--------------HHhcC----C-C----CccchHHHHHH-------
Q 005864 465 KFYGF------CSHPRHSFLVYECLERGSLAE--------------ILSND----G-S----IKEFSWIVRTN------- 508 (673)
Q Consensus 465 ~l~~~------~~~~~~~~lv~e~~~~gsL~~--------------~l~~~----~-~----~~~l~~~~~~~------- 508 (673)
+++.. ....+..+++++|++|..+.. .++.. . . .....|.....
T Consensus 81 ~~~~~~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 160 (322)
T 2ppq_A 81 LPLPRKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERAD 160 (322)
T ss_dssp CBCCBTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGG
T ss_pred cccCCCCCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHH
Confidence 33321 122356789999999865321 11111 0 0 01112332111
Q ss_pred -----HHHHHHHHHHHHhhc----CCCCeEEecCCCCCeEeCCCCceEEecccceee
Q 005864 509 -----VIKSVANALSYMHHD----CFPPIVHRDISSKNVLLSSEYEARVSDFGIAKF 556 (673)
Q Consensus 509 -----i~~~i~~~l~~LH~~----~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~ 556 (673)
+...+.+.++++++. ...+++|+|+.+.||+++++..+.|+||+.+..
T Consensus 161 ~~~~~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~~ 217 (322)
T 2ppq_A 161 EVEKGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFACN 217 (322)
T ss_dssp GTSTTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred hhhhhhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhccC
Confidence 011244455555532 124789999999999999876568999998763
No 435
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=97.39 E-value=0.00067 Score=68.51 Aligned_cols=142 Identities=17% Similarity=0.142 Sum_probs=73.5
Q ss_pred ceeccCCcEE-EEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccC-C-CcccceeeeeecCCeeeEEEeccc
Q 005864 408 QCIGIGGQAS-VYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIR-H-RNIVKFYGFCSHPRHSFLVYECLE 484 (673)
Q Consensus 408 ~~ig~G~~g~-vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~-h-~niv~l~~~~~~~~~~~lv~e~~~ 484 (673)
+.++.|.... +|+....+|+.+++|....... ..+..|+.++..+. + -.+.+++.+....+ +++||++.
T Consensus 24 ~~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~~------~~~~~e~~~l~~L~~~g~~vP~v~~~d~~~g--~ll~e~l~ 95 (333)
T 3csv_A 24 TPLAGDASSRRYQRLRSPTGAKAVLMDWSPEEG------GDTQPFVDLAQYLRNLDISAPEIYAEEHARG--LLLIEDLG 95 (333)
T ss_dssp CC--------CCEEEECTTCCEEEEEECCTTTT------CCSHHHHHHHHHHHHTTCBCCCEEEEETTTT--EEEECCCC
T ss_pred eECCCCCCCceEEEEEcCCCCeEEEEECCCCCC------ccccHHHHHHHHHHhCCCCCCceeeecCCCC--EEEEeeCC
Confidence 4566665555 6687765577788876543210 22334566666663 2 23556676644333 68999998
Q ss_pred CCChHHHHhcCC---------------------C--CccchHHHHH-------H-------------HHHHHHHHHHHHh
Q 005864 485 RGSLAEILSNDG---------------------S--IKEFSWIVRT-------N-------------VIKSVANALSYMH 521 (673)
Q Consensus 485 ~gsL~~~l~~~~---------------------~--~~~l~~~~~~-------~-------------i~~~i~~~l~~LH 521 (673)
+.++.+++.... . ...++..... . ....+.+.++.+.
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~ 175 (333)
T 3csv_A 96 DALFTEVINNDPAQEMPLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEHRFAQIL 175 (333)
T ss_dssp SCBHHHHHHHCGGGHHHHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHTHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred CcchHHHhcCCCccHHHHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 777655443210 0 0111110000 0 0001112222221
Q ss_pred h---cCCCCeEEecCCCCCeEeCCC----CceEEecccceeec
Q 005864 522 H---DCFPPIVHRDISSKNVLLSSE----YEARVSDFGIAKFL 557 (673)
Q Consensus 522 ~---~~~~~ivH~dlk~~Nill~~~----~~~kl~Dfg~~~~~ 557 (673)
+ ...+.++|||+.+.||+++.+ +.+.|+||+.+..-
T Consensus 176 ~~~~~~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G 218 (333)
T 3csv_A 176 SAQLEGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLG 218 (333)
T ss_dssp HHHCCSCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEE
T ss_pred HhcccCCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcC
Confidence 1 122478999999999999875 67999999998754
No 436
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=97.32 E-value=0.0022 Score=64.46 Aligned_cols=158 Identities=12% Similarity=0.117 Sum_probs=87.4
Q ss_pred ccHHHHHHHhcCCCc-----cceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCC--ccc
Q 005864 392 IVYEEIIRATKNFDA-----EQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHR--NIV 464 (673)
Q Consensus 392 ~~~~~~~~~~~~~~~-----~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~--niv 464 (673)
++.+++......|.+ ...++ |....||+....+|+.+++|....... ....+..|..++..++.. .+.
T Consensus 11 l~~~~i~~~l~~~g~~~~~~~~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~~----~~~~~~~E~~~~~~L~~~g~~vp 85 (328)
T 1zyl_A 11 LHPDTIMDALFEHGIRVDSGLTPLN-SYENRVYQFQDEDRRRFVVKFYRPERW----TADQILEEHQFALQLVNDEVPVA 85 (328)
T ss_dssp CCHHHHHHHHHHTTCCCCSCCEEEC-CSSSEEEEECCTTCCCEEEEEECTTTS----CHHHHHHHHHHHHHHHHTTCSBC
T ss_pred CCHHHHHHHHHHcCCCCCceEEeec-CcccceEEEEcCCCCEEEEEEcCCCCC----CHHHHHHHHHHHHHHHHcCCeec
Confidence 344555544444432 34576 888999999877788899999863211 133455677777776421 234
Q ss_pred ceeee-----eecCCeeeEEEecccCCChH----HH----------Hhc----CC--CCccchHHHH----HHH------
Q 005864 465 KFYGF-----CSHPRHSFLVYECLERGSLA----EI----------LSN----DG--SIKEFSWIVR----TNV------ 509 (673)
Q Consensus 465 ~l~~~-----~~~~~~~~lv~e~~~~gsL~----~~----------l~~----~~--~~~~l~~~~~----~~i------ 509 (673)
+++.. ...++..++++||++|.++. +. ++. .. .....++... ..+
T Consensus 86 ~~~~~~g~~~~~~~g~~~~l~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (328)
T 1zyl_A 86 APVAFNGQTLLNHQGFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATL 165 (328)
T ss_dssp CCCCBTTBSCEEETTEEEEEEECCCCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSS
T ss_pred ceeecCCcEEEEECCEEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCc
Confidence 44443 12245567899999885432 00 111 00 0011121110 000
Q ss_pred ---------HHHHHHHHHHHhhc----CCCCeEEecCCCCCeEeCCCCceEEecccceee
Q 005864 510 ---------IKSVANALSYMHHD----CFPPIVHRDISSKNVLLSSEYEARVSDFGIAKF 556 (673)
Q Consensus 510 ---------~~~i~~~l~~LH~~----~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~ 556 (673)
...+.+.++.+... ....++|+|+++.||+++ + .+.++||+.+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~ 223 (328)
T 1zyl_A 166 IPSGLKAAFLKATDELIAAVTAHWREDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARN 223 (328)
T ss_dssp SCTTTHHHHHHHHHHHHHHHHHHCCSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence 11111223333221 223678999999999999 5 899999998764
No 437
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=97.24 E-value=0.00074 Score=70.60 Aligned_cols=73 Identities=16% Similarity=0.138 Sum_probs=49.7
Q ss_pred cceeccCCcEEEEEEEeCC--------CCEEEEEeeccchhhhhHHHHHHHHHHHHHhccC-CCcccceeeeeecCCeee
Q 005864 407 EQCIGIGGQASVYRGELPS--------GEVVAVKKFHSLLLSEISVQREFLNEIKALTEIR-HRNIVKFYGFCSHPRHSF 477 (673)
Q Consensus 407 ~~~ig~G~~g~vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~ 477 (673)
.+.|+.|....+|++..++ ++.+++|+..... . ...+.+|..++..+. +.-..++++.+.. .
T Consensus 78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~~-~----~~~li~E~~~l~~L~~~g~~P~l~~~~~~----g 148 (429)
T 1nw1_A 78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPE-T----ESHLVAESVIFTLLSERHLGPKLYGIFSG----G 148 (429)
T ss_dssp EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCC-C----HHHHHHHHHHHHHHHHTTSSSCEEEEETT----E
T ss_pred EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCCC-c----HHHHHHHHHHHHHHHhCCCCCcEEEEeCC----C
Confidence 3568899999999998753 5789999874321 1 134457888888884 3334567776542 3
Q ss_pred EEEecccCCCh
Q 005864 478 LVYECLERGSL 488 (673)
Q Consensus 478 lv~e~~~~gsL 488 (673)
+|+||++|.++
T Consensus 149 ~v~e~l~G~~l 159 (429)
T 1nw1_A 149 RLEEYIPSRPL 159 (429)
T ss_dssp EEECCCCEEEC
T ss_pred EEEEEeCCccc
Confidence 89999987443
No 438
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=97.15 E-value=0.0015 Score=59.75 Aligned_cols=103 Identities=19% Similarity=0.128 Sum_probs=66.7
Q ss_pred CChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEecccceeecCCCCCCce
Q 005864 486 GSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKFLKPGSSNWT 565 (673)
Q Consensus 486 gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~ 565 (673)
-||.++|...+ .++++.++|.++.|.+.+|.-.-.... + ..+=+.|..|++..+|.|...+ +.+.
T Consensus 33 vSL~eIL~~~~--~PlsEEqaWALc~Qc~~~L~~~~~~~~-~-~~~i~~~~~i~l~~dG~V~f~~-~~s~---------- 97 (229)
T 2yle_A 33 LSLEEILRLYN--QPINEEQAWAVCYQCCGSLRAAARRRQ-P-RHRVRSAAQIRVWRDGAVTLAP-AADD---------- 97 (229)
T ss_dssp EEHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHHHTTC-C-CCCCCSGGGEEEETTSCEEECC-C-------------
T ss_pred ccHHHHHHHcC--CCcCHHHHHHHHHHHHHHHHhhhhccc-C-CceecCCcceEEecCCceeccc-cccc----------
Confidence 38999998765 679999999999999999887622111 1 1222346888999998887763 1110
Q ss_pred ecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCC
Q 005864 566 EFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHP 606 (673)
Q Consensus 566 ~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p 606 (673)
.....+.|||... ...+.+.=|||+|+++|.-+--..|
T Consensus 98 --~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~ 135 (229)
T 2yle_A 98 --AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGLK 135 (229)
T ss_dssp -----------CCSS-SSSCHHHHHHHHHHHHHHHHTTTCC
T ss_pred --ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCC
Confidence 1123466888753 3557788999999999999854443
No 439
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=97.11 E-value=0.0015 Score=66.68 Aligned_cols=142 Identities=16% Similarity=0.185 Sum_probs=84.2
Q ss_pred cceeccCCcEEEEEEEeC--------CCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccC-CCcccceeeeeecCCeee
Q 005864 407 EQCIGIGGQASVYRGELP--------SGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIR-HRNIVKFYGFCSHPRHSF 477 (673)
Q Consensus 407 ~~~ig~G~~g~vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~ 477 (673)
.+.+..|-...+|+...+ +++.|++|+..... .......+|..+++.+. +.-..++++++.+ .
T Consensus 55 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~----~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g 126 (379)
T 3feg_A 55 VYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAIL----QGVDSLVLESVMFAILAERSLGPQLYGVFPE----G 126 (379)
T ss_dssp CEEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC-------CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----E
T ss_pred EEEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCcc----chHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----c
Confidence 356888999999999875 35789999863311 12345568888888884 3334667766643 2
Q ss_pred EEEecccCCChHHH-----------------HhcCCC--Cccc--hHHHHHHHHHHHHH-------------------HH
Q 005864 478 LVYECLERGSLAEI-----------------LSNDGS--IKEF--SWIVRTNVIKSVAN-------------------AL 517 (673)
Q Consensus 478 lv~e~~~~gsL~~~-----------------l~~~~~--~~~l--~~~~~~~i~~~i~~-------------------~l 517 (673)
+|+||++|.++..- ++.... .... -|.+..++..++.. .+
T Consensus 127 ~v~e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~ 206 (379)
T 3feg_A 127 RLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEM 206 (379)
T ss_dssp EEEECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHH
T ss_pred cEEEEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHH
Confidence 89999998655311 121110 1111 34555555544322 12
Q ss_pred HH----Hhhc-CCCCeEEecCCCCCeEeCCC----CceEEecccceee
Q 005864 518 SY----MHHD-CFPPIVHRDISSKNVLLSSE----YEARVSDFGIAKF 556 (673)
Q Consensus 518 ~~----LH~~-~~~~ivH~dlk~~Nill~~~----~~~kl~Dfg~~~~ 556 (673)
.. |... ....++|+|+.+.||+++++ +.+.++||..+..
T Consensus 207 ~~L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~ 254 (379)
T 3feg_A 207 GNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSY 254 (379)
T ss_dssp HHHHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEE
T ss_pred HHHHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCc
Confidence 22 3221 12367899999999999876 6899999998864
No 440
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.10 E-value=0.00078 Score=57.25 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=41.6
Q ss_pred eEeecCCcCC-CCCcccccCCCcccEEEecCccccccCccccccCCCccEEEccCccccCCC
Q 005864 236 ELDLSHNFLG-GEIPPQICNLESLEKLNVSHNNLSGLIPSCFEGMHGLSCIDISYNELLGLI 296 (673)
Q Consensus 236 ~L~ls~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~ 296 (673)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+.+.+..|..+++|+.|+|++|++.+..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC 71 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC 71 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccC
Confidence 5666676665 24443322 35788888888888777778888888888888888877644
No 441
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.82 E-value=0.0017 Score=55.14 Aligned_cols=55 Identities=16% Similarity=0.268 Sum_probs=27.8
Q ss_pred EEEcccCccc-cccCccccCCCCCcEEEccCcccccccccccCCCCCccEEEccCCcc
Q 005864 44 NLEIDNNQLF-GQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDISHNNF 100 (673)
Q Consensus 44 ~L~L~~n~i~-~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i 100 (673)
.++.++++++ ..+|..+. ++|++|+|++|+|+.+....|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555553 12332211 2455555555555555555555555555555555544
No 442
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=96.80 E-value=0.0056 Score=64.21 Aligned_cols=74 Identities=18% Similarity=0.044 Sum_probs=47.6
Q ss_pred cceeccCCcEEEEEEEeCC-CCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcc-cceeeeeecCCeeeEEEeccc
Q 005864 407 EQCIGIGGQASVYRGELPS-GEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNI-VKFYGFCSHPRHSFLVYECLE 484 (673)
Q Consensus 407 ~~~ig~G~~g~vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~~ 484 (673)
.+.|+.|-...+|+....+ +..+++|+....... .-...+|..++..+...++ .++++++. + ..|+||++
T Consensus 113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~----~idR~~E~~vl~~L~~~gl~P~ll~~~~--~--G~v~e~I~ 184 (458)
T 2qg7_A 113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKTDE----IINREREKKISCILYNKNIAKKIYVFFT--N--GRIEEFMD 184 (458)
T ss_dssp EEEECC--CEEEEEEEETTTTEEEEEEEECC-CCS----CSCHHHHHHHHHHHTTSSSBCCEEEEET--T--EEEEECCC
T ss_pred EEEcCCCeEeEEEEEEECCCCceEEEEECCCChhh----hcCHHHHHHHHHHHHhcCCCCCEEEEeC--C--eEEEEeeC
Confidence 3568899999999998765 578899987432111 1112478888888854444 56777763 2 25999998
Q ss_pred CCCh
Q 005864 485 RGSL 488 (673)
Q Consensus 485 ~gsL 488 (673)
|.++
T Consensus 185 G~~l 188 (458)
T 2qg7_A 185 GYAL 188 (458)
T ss_dssp SEEC
T ss_pred CccC
Confidence 7544
No 443
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=96.74 E-value=0.0021 Score=65.93 Aligned_cols=74 Identities=11% Similarity=0.041 Sum_probs=44.2
Q ss_pred cceeccCCcEEEEEEEeCC---------CCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCc-ccceeeeeecCCee
Q 005864 407 EQCIGIGGQASVYRGELPS---------GEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRN-IVKFYGFCSHPRHS 476 (673)
Q Consensus 407 ~~~ig~G~~g~vy~~~~~~---------~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~n-iv~l~~~~~~~~~~ 476 (673)
.+.++.|....+|+....+ ++.+++|+....... ......|..++..+.... +.++++.. + -
T Consensus 38 ~~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~----~~~~~~E~~~l~~L~~~g~~P~~~~~~--~--~ 109 (369)
T 3c5i_A 38 VKQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDE----LYNTISEFEVYKTMSKYKIAPQLLNTF--N--G 109 (369)
T ss_dssp EEEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGG----TSCHHHHHHHHHHHHHTTSSCCEEEEE--T--T
T ss_pred EEEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCccc----eecHHHHHHHHHHHHhcCCCCceEEec--C--C
Confidence 3567889999999997754 268889987543111 112356777777774333 44666554 2 3
Q ss_pred eEEEecccCCCh
Q 005864 477 FLVYECLERGSL 488 (673)
Q Consensus 477 ~lv~e~~~~gsL 488 (673)
++|+||++|.++
T Consensus 110 ~~v~e~i~G~~l 121 (369)
T 3c5i_A 110 GRIEEWLYGDPL 121 (369)
T ss_dssp EEEEECCCSEEC
T ss_pred cEEEEEecCCcC
Confidence 689999987543
No 444
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=96.64 E-value=0.0068 Score=62.11 Aligned_cols=146 Identities=16% Similarity=0.176 Sum_probs=85.2
Q ss_pred cceeccCCcEEEEEEEeCC--------CCEEEEEeeccchhh---------hhHH------HHHHHHHHHHHhccC-CCc
Q 005864 407 EQCIGIGGQASVYRGELPS--------GEVVAVKKFHSLLLS---------EISV------QREFLNEIKALTEIR-HRN 462 (673)
Q Consensus 407 ~~~ig~G~~g~vy~~~~~~--------~~~vavK~~~~~~~~---------~~~~------~~~~~~e~~~l~~l~-h~n 462 (673)
.+.|..|-...+|+...++ ++.|.+++.-..... ..+. ......|..+++.+. +.-
T Consensus 57 v~~l~gGlTN~~~~v~~~~~~~~~~~~~~~~llRi~G~~te~~~~~~~~~~~idR~~~~~~~~~~~~E~~~l~~L~~~Gi 136 (401)
T 3f2s_A 57 ISVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSL 136 (401)
T ss_dssp EEEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEEC-----------------------CHHHHHHHHHHHHHHHTTS
T ss_pred EEEcCCCccCceEEEEeCCCcccccCCCccEEEEeCCCCcccccccccccchhhhhhhhccchhhHHHHHHHHHHHhcCC
Confidence 3567789999999998754 368888886442110 0000 112335888888884 555
Q ss_pred ccceeeeeecCCeeeEEEecccCCChHH--H---------------HhcCC--CCccc--hHHHHHHHHHHHH-------
Q 005864 463 IVKFYGFCSHPRHSFLVYECLERGSLAE--I---------------LSNDG--SIKEF--SWIVRTNVIKSVA------- 514 (673)
Q Consensus 463 iv~l~~~~~~~~~~~lv~e~~~~gsL~~--~---------------l~~~~--~~~~l--~~~~~~~i~~~i~------- 514 (673)
..++++++..+ +|+||++|-+|.. + ++... -.... -|....++..++.
T Consensus 137 ~Pkl~~~~~~G----~i~efI~G~~L~~~dl~~p~~~~~iA~~L~~LH~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~ 212 (401)
T 3f2s_A 137 GPKLYGIFPQG----RLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEE 212 (401)
T ss_dssp SCCEEEEETTE----EEEECCCEEECCGGGGGSHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSH
T ss_pred CCeEEEEeCCC----eEEEecCCccCCHHHHhhHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhccCcch
Confidence 66777776432 8999999755421 1 11111 01112 2334444433321
Q ss_pred ---------------HHH----HHHhhc-CCCCeEEecCCCCCeEeCCC------CceEEecccceee
Q 005864 515 ---------------NAL----SYMHHD-CFPPIVHRDISSKNVLLSSE------YEARVSDFGIAKF 556 (673)
Q Consensus 515 ---------------~~l----~~LH~~-~~~~ivH~dlk~~Nill~~~------~~~kl~Dfg~~~~ 556 (673)
+-+ .+|... ....++|+|+.+.||+++++ +.+.++||..+..
T Consensus 213 ~~~~~~~~~~~~~l~~e~~~l~~~l~~~~~~~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~~ 280 (401)
T 3f2s_A 213 SRIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCEE
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhcCCCeeEEeccCCcccEEEcCCcccCcccceEEEeeccCCc
Confidence 112 223322 12367899999999999877 7899999998864
No 445
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=96.15 E-value=0.04 Score=55.37 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=28.2
Q ss_pred CCeEEecCCCCCeEeCCCCceEEecccceeec
Q 005864 526 PPIVHRDISSKNVLLSSEYEARVSDFGIAKFL 557 (673)
Q Consensus 526 ~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~~ 557 (673)
..++|+|+.+.||++++++.+.++||+.+..-
T Consensus 206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~~ 237 (339)
T 3i1a_A 206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPMLA 237 (339)
T ss_dssp CEEECSCCCGGGEEECGGGCEEECCCSSCEEE
T ss_pred ceeEeCCCCcCCEEEeCCCeEEEEECCCCeeC
Confidence 47899999999999998888999999887653
No 446
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=95.00 E-value=0.07 Score=55.14 Aligned_cols=141 Identities=9% Similarity=0.044 Sum_probs=83.9
Q ss_pred cceeccCCcEEEEEEEeCC--------CCEEEEEeeccchhhhhHHHHHHHHHHHHHhccC-CCcccceeeeeecCCeee
Q 005864 407 EQCIGIGGQASVYRGELPS--------GEVVAVKKFHSLLLSEISVQREFLNEIKALTEIR-HRNIVKFYGFCSHPRHSF 477 (673)
Q Consensus 407 ~~~ig~G~~g~vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~ 477 (673)
.+.+..|-...+|+...++ ++.|++|+....... .-...+|..+++.+. +.-..++++.+. -+
T Consensus 75 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t~~----~idR~~E~~~l~~L~~~gi~P~l~~~~~----~~ 146 (424)
T 3mes_A 75 VKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHVGK----FYDSKVELDVFRYLSNINIAPNIIADFP----EG 146 (424)
T ss_dssp EEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC-C----CCCHHHHHHHHHHHHHTTSSCCEEEEET----TE
T ss_pred EEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCcch----hcCHHHHHHHHHHHHhcCCCCCEEEEcC----CC
Confidence 3568889999999998753 688999986442111 112246777777774 333455665432 36
Q ss_pred EEEecccCCChHH-------H----------HhcC-------C---CCccchHHHHHHHHHHH-----------------
Q 005864 478 LVYECLERGSLAE-------I----------LSND-------G---SIKEFSWIVRTNVIKSV----------------- 513 (673)
Q Consensus 478 lv~e~~~~gsL~~-------~----------l~~~-------~---~~~~l~~~~~~~i~~~i----------------- 513 (673)
.|+||++|.++.. . ++.. . ...+--|.+..++..++
T Consensus 147 ~I~efI~G~~l~~~~l~~~~~~~~ia~~La~LH~~~~~~~~L~~~~~~~p~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~ 226 (424)
T 3mes_A 147 RIEEFIDGEPLTTKQLQLTHICVEVAKNMGSLHIINSKRADFPSRFDKEPILFKRIYLWREEAKIQVSKNNFQIDKELYS 226 (424)
T ss_dssp EEEECCCSEECCTGGGGSHHHHHHHHHHHHHHHTHHHHCTTSCTTSCCSCCHHHHHHHHHHHHHHHHHTCC--CCHHHHH
T ss_pred EEEEEeCCccCChhhcCCHHHHHHHHHHHHHHhcCchhhccCccccCCCCcHHHHHHHHHHHHHHhhcccchhhccccHH
Confidence 8999999865421 0 0110 0 11111344444443322
Q ss_pred --HHHHHHHhh---------------------cCCCCeEEecCCCCCeEeCCCCceEEecccceee
Q 005864 514 --ANALSYMHH---------------------DCFPPIVHRDISSKNVLLSSEYEARVSDFGIAKF 556 (673)
Q Consensus 514 --~~~l~~LH~---------------------~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~~ 556 (673)
...+.+|.+ .....++|+|+.+.||+ ++++.+.++||..+..
T Consensus 227 ~l~~e~~~L~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~H~D~~~~N~l-~~~~~~~~IDwe~a~~ 291 (424)
T 3mes_A 227 KILEEIDQLEELIMGGEKFSMERALELKLYSPAFSLVFAHNDLQENNLL-QTQNNIRMIDYEYSAI 291 (424)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHTTCGGGCEEEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred HHHHHHHHHHHHHhhhcccccccccccccccCCCCceEECCCCCcccee-cCCCcEEEEecccCCc
Confidence 122233321 11236789999999999 7788999999999874
No 447
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=94.34 E-value=0.13 Score=53.03 Aligned_cols=30 Identities=27% Similarity=0.445 Sum_probs=25.2
Q ss_pred CeEEecCCCCCeEe------CCCCceEEecccceee
Q 005864 527 PIVHRDISSKNVLL------SSEYEARVSDFGIAKF 556 (673)
Q Consensus 527 ~ivH~dlk~~Nill------~~~~~~kl~Dfg~~~~ 556 (673)
.++|+|+.+.||++ +++..++++||.+|..
T Consensus 245 vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~ 280 (401)
T 3g15_A 245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp EEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred eeEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence 35799999999999 4456799999999874
No 448
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=92.03 E-value=0.44 Score=43.47 Aligned_cols=116 Identities=10% Similarity=0.107 Sum_probs=81.7
Q ss_pred CCCcccceeeeeecCCeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCCCe
Q 005864 459 RHRNIVKFYGFCSHPRHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALSYMHHDCFPPIVHRDISSKNV 538 (673)
Q Consensus 459 ~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk~~Ni 538 (673)
.||+.++. .+-.+++.+.+.|+.-+ +..++-. ....+...+++++.+|+....+++.. +|--+.|+|+
T Consensus 43 ~~~~Fl~~-~I~e~eD~v~~~y~~~~--~~~~f~~----ik~~~~~eKlr~l~ni~~l~~~~~~r-----~tf~L~P~NL 110 (215)
T 4ann_A 43 HSPYFIDA-ELTELRDSFQIHYDIND--NHTPFDN----IKSFTKNEKLRYLLNIKNLEEVNRTR-----YTFVLAPDEL 110 (215)
T ss_dssp CCTTBCCE-EEEECSSEEEEEECCCT--TSEEGGG----GGGSCHHHHHHHHHHGGGGGGGGGSS-----EECCCSGGGE
T ss_pred cCCcccce-EEEEcccEEEEEEEcCc--ccCCHHH----HHhcCHHHHHHHHHHHHHHHHHhcCc-----eEEEEecceE
Confidence 58888876 45556666666665433 2222221 13467788999999999998777766 8999999999
Q ss_pred EeCCCCceEEecccceeecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCc
Q 005864 539 LLSSEYEARVSDFGIAKFLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRD 608 (673)
Q Consensus 539 ll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~ 608 (673)
+++.++.+++.=.|+-..+ +|. ..+...=.-.+=+++..+++++..|+
T Consensus 111 ~f~~~~~p~i~~RGik~~l-----------------~P~-----~~~ee~fL~qyKAliiall~~K~~Fe 158 (215)
T 4ann_A 111 FFTRDGLPIAKTRGLQNVV-----------------DPL-----PVSEAEFLTRYKALVICAFNEKQSFD 158 (215)
T ss_dssp EECTTSCEEESCCEETTTB-----------------SCC-----CCCHHHHHHHHHHHHHHHHCTTCCHH
T ss_pred EEcCCCCEEEEEccCccCC-----------------CCC-----CCCHHHHHHHHHHHHHHHHcCCCCHH
Confidence 9999999999877654322 222 22333445577889999999999986
No 449
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=90.34 E-value=1.3 Score=40.45 Aligned_cols=115 Identities=9% Similarity=0.046 Sum_probs=80.1
Q ss_pred CCCcccceeeeeecCCeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHHHHHHH-HHhhcCCCCeEEecCCCCC
Q 005864 459 RHRNIVKFYGFCSHPRHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSVANALS-YMHHDCFPPIVHRDISSKN 537 (673)
Q Consensus 459 ~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~-~LH~~~~~~ivH~dlk~~N 537 (673)
.||++ -...-.+++...+.++.-+++.=...++ ..+...+++++.+|+.... +++.. +|--+.|+|
T Consensus 48 ~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~~i~------~~~~~eKlrll~nl~~L~~~~~~~r-----~tf~l~P~N 114 (219)
T 4ano_A 48 VDPCI--VRDIDVSEDEVKVVIKPPSSFLTFAAIR------KTTLLSRIRAAIHLVSKVKHHSARR-----LIFIVCPEN 114 (219)
T ss_dssp SCSSS--EEEEEECSSEEEEEEECCTTCEEHHHHH------TSCHHHHHHHHHHHHHHHSSCCSSS-----EECCCCGGG
T ss_pred cCCCC--CeEEEEeCCEEEEEEEcCcccCcHHHHH------hcCHHHHHHHHHHHHHHHHHhhhCc-----eeEEEeCce
Confidence 57877 4445566777777777554432222332 3677889999999998888 77765 889999999
Q ss_pred eEeCCCCceEEecccceeecCCCCCCceecccccccccccccccCCcCcchhHHHHHHHHHHHHhCCCCCc
Q 005864 538 VLLSSEYEARVSDFGIAKFLKPGSSNWTEFAGTFGYVAPELAYTMKVTEKCDVYSFGVLALEVIKGKHPRD 608 (673)
Q Consensus 538 ill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~ 608 (673)
++++.++.+++.-.|+-.. ++|.. .+..-=.-.+=+++..++.++..|+
T Consensus 115 L~f~~~~~p~i~hRGi~~~-----------------lpP~e-----~~ee~fl~qyKali~all~~K~~Fe 163 (219)
T 4ano_A 115 LMFNRALEPFFLHVGVKES-----------------LPPDE-----WDDERLLREVKATVLALTEGEYRFD 163 (219)
T ss_dssp EEECTTCCEEESCCEETTT-----------------BSSCS-----CCHHHHHHHHHHHHHHHTTCSSCHH
T ss_pred EEEeCCCcEEEEEcCCccc-----------------CCCCC-----CCHHHHHHHHHHHHHHHHcCCCCHH
Confidence 9999999999987775432 23331 2222334567788888999888876
No 450
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=86.74 E-value=0.26 Score=31.78 Aligned_cols=24 Identities=13% Similarity=0.246 Sum_probs=10.8
Q ss_pred eehhhhhHHHHHHHHHhhhheeec
Q 005864 343 IIIPILGVFALLFFVIGIIFGRTK 366 (673)
Q Consensus 343 i~~~~~~~~~~l~~~~~~~~~~~k 366 (673)
+++.++|+++++++++.++++.+|
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~~RR 37 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGILIKR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhheeh
Confidence 455566644444444443333333
No 451
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=84.16 E-value=2 Score=33.87 Aligned_cols=46 Identities=9% Similarity=0.080 Sum_probs=22.5
Q ss_pred ccccCCCccccCCCCCCEEEcccCccccccCccccCCCCCcEEEccC
Q 005864 27 SLSGSVPGEIGNLMQLTNLEIDNNQLFGQIPRSLRNLASLNRVHLEQ 73 (673)
Q Consensus 27 ~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~ 73 (673)
.++.+....|.++++|+.+.|-.+ ++.+...+|.+|.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344444455555555555555543 3334444555555555555544
No 452
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=84.04 E-value=0.43 Score=30.91 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=10.6
Q ss_pred eehhhhh-HHHHHHHHHhhhheeecc
Q 005864 343 IIIPILG-VFALLFFVIGIIFGRTKR 367 (673)
Q Consensus 343 i~~~~~~-~~~~l~~~~~~~~~~~k~ 367 (673)
|++.+++ +++++++++.++++.+++
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRR 38 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhh
Confidence 4444444 444444444444433333
No 453
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=83.61 E-value=0.46 Score=30.71 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=10.3
Q ss_pred eehhhhh-HHHHHHHHHhhhheeecc
Q 005864 343 IIIPILG-VFALLFFVIGIIFGRTKR 367 (673)
Q Consensus 343 i~~~~~~-~~~~l~~~~~~~~~~~k~ 367 (673)
|++.+++ +++++++++.++++.+++
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEeehHHHHHHHHHHHHHHHHhhhh
Confidence 4444444 444444444444433333
No 454
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=82.14 E-value=0.17 Score=52.97 Aligned_cols=62 Identities=8% Similarity=-0.066 Sum_probs=17.8
Q ss_pred ccceeccCCcEEEEEEEeCC-CCEEEE------EeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeeeee
Q 005864 406 AEQCIGIGGQASVYRGELPS-GEVVAV------KKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGFCS 471 (673)
Q Consensus 406 ~~~~ig~G~~g~vy~~~~~~-~~~vav------K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~ 471 (673)
+.+.+| ||.||+|.+.. ..+||| |..+.... ..+....+.+|..++...+|||+++.+++..
T Consensus 146 l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~-~~e~~~~~~rea~l~~~~~H~niv~~h~f~~ 214 (463)
T 3cxl_A 146 IYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGV-SEKRLTSLVRRATLKENEQIPKYEKIHNFKV 214 (463)
T ss_dssp STTTSS---BCCC---------CCBGGGC------------------------------------CBCCCEEE
T ss_pred ccccCC---chhhhcccccccCCchhhhhccCccccccccc-cccccccccccccccccccccccCCCcceEE
Confidence 445666 99999998754 367888 66554322 2233457888999999999999999988764
No 455
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=80.38 E-value=3.2 Score=32.72 Aligned_cols=46 Identities=11% Similarity=0.098 Sum_probs=25.9
Q ss_pred ccccccCccccCCCCCcEEEccCcccccccccccCCCCCccEEEccC
Q 005864 51 QLFGQIPRSLRNLASLNRVHLEQNHLTGNISEVFGIYPNLTFLDISH 97 (673)
Q Consensus 51 ~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 97 (673)
.++.+...+|.++++|+.+.|-.+ ++.+...+|.++.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344444556666666666666543 4445555666666666665554
No 456
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=52.49 E-value=6 Score=26.81 Aligned_cols=23 Identities=17% Similarity=0.469 Sum_probs=11.2
Q ss_pred eeeeehhhhhHHHHHHHHHhhhh
Q 005864 340 WFLIIIPILGVFALLFFVIGIIF 362 (673)
Q Consensus 340 ~~~i~~~~~~~~~~l~~~~~~~~ 362 (673)
+.++++++++.++++.+++.+.+
T Consensus 12 ~wiIi~svl~GLllL~li~~~Lw 34 (54)
T 2knc_A 12 IWWVLVGVLGGLLLLTILVLAMW 34 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555444444433
No 457
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=50.53 E-value=5.3 Score=26.96 Aligned_cols=23 Identities=17% Similarity=0.472 Sum_probs=11.0
Q ss_pred eeeeehhhhhHHHHHHHHHhhhh
Q 005864 340 WFLIIIPILGVFALLFFVIGIIF 362 (673)
Q Consensus 340 ~~~i~~~~~~~~~~l~~~~~~~~ 362 (673)
+.+|++++++.++++.+++.+.+
T Consensus 9 ~WiIi~svl~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 9 LWVILLSAFAGLLLLMLLILALW 31 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555444444433
No 458
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=47.88 E-value=7 Score=24.36 Aligned_cols=10 Identities=30% Similarity=0.657 Sum_probs=4.7
Q ss_pred eehhhhhHHH
Q 005864 343 IIIPILGVFA 352 (673)
Q Consensus 343 i~~~~~~~~~ 352 (673)
++.+++++++
T Consensus 13 IAGiVvG~v~ 22 (38)
T 2k1k_A 13 IVAVIFGLLL 22 (38)
T ss_dssp HHHHHHHHHH
T ss_pred eeeeehHHHH
Confidence 3444555443
No 459
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=44.76 E-value=12 Score=24.19 Aligned_cols=28 Identities=4% Similarity=0.020 Sum_probs=17.9
Q ss_pred eehhhhhHHHHHHHHHhhhheeeccccc
Q 005864 343 IIIPILGVFALLFFVIGIIFGRTKRTSK 370 (673)
Q Consensus 343 i~~~~~~~~~~l~~~~~~~~~~~k~~~~ 370 (673)
+++.++++++++.+++.++.+|++++++
T Consensus 16 VVgGv~~v~ii~~~~~~~~RRRr~~~kr 43 (44)
T 2l2t_A 16 VIGGLFILVIVGLTFAVYVRRKSIKKKR 43 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSCCC
T ss_pred ehHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 4455666666666767777777766553
No 460
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=42.40 E-value=5.1 Score=24.34 Aligned_cols=10 Identities=40% Similarity=0.766 Sum_probs=4.6
Q ss_pred eehhhhhHHH
Q 005864 343 IIIPILGVFA 352 (673)
Q Consensus 343 i~~~~~~~~~ 352 (673)
+++.++|+++
T Consensus 10 IaagVvglll 19 (35)
T 1iij_A 10 IIATVVGVLL 19 (35)
T ss_dssp HHHHHHHHHH
T ss_pred eHHHHHHHHH
Confidence 4445555333
No 461
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=39.77 E-value=3.5e+02 Score=28.79 Aligned_cols=46 Identities=26% Similarity=0.224 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHH--HHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEeccccee
Q 005864 503 WIVRTNVIKSVA--NALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAK 555 (673)
Q Consensus 503 ~~~~~~i~~~i~--~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~ 555 (673)
+..+..++..+| ..+.|+=.- +|=.++|||++.+|++.=+|||.+.
T Consensus 454 ~~a~~nF~~S~A~ySvv~YILGi-------gDRH~~NILld~tG~v~HIDFG~~f 501 (614)
T 3ls8_A 454 AEVMDTYVKSCAGYCVITYILGV-------GDRHLDNLLLTKTGKLFHIDFGYIL 501 (614)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC-------CCCCTTSEEECTTSCEEECCCSSCT
T ss_pred HHHHHHHHHHHHHHhHhheeeec-------cCCCCcceeEcCCCCEeeeehHHhh
Confidence 445555555443 234444433 5667899999999999999999874
No 462
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=37.89 E-value=16 Score=23.56 Aligned_cols=28 Identities=7% Similarity=-0.064 Sum_probs=17.6
Q ss_pred eeehhhhhHHHHHHHHHhhhheeecccc
Q 005864 342 LIIIPILGVFALLFFVIGIIFGRTKRTS 369 (673)
Q Consensus 342 ~i~~~~~~~~~~l~~~~~~~~~~~k~~~ 369 (673)
-+++.++++++++++++.++.+|+++++
T Consensus 16 gVVgGv~~~~ii~~~~~~~~RRr~~~~k 43 (44)
T 2ks1_B 16 GMVGALLLLLVVALGIGLFMRRRHIVRK 43 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCSC
T ss_pred ehhHHHHHHHHHHHHHHHHhhhhHhhcc
Confidence 3455566666666676777777766654
No 463
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=28.70 E-value=21 Score=22.77 Aligned_cols=23 Identities=17% Similarity=0.469 Sum_probs=10.8
Q ss_pred eeeeehhhhhHHHHHHHHHhhhh
Q 005864 340 WFLIIIPILGVFALLFFVIGIIF 362 (673)
Q Consensus 340 ~~~i~~~~~~~~~~l~~~~~~~~ 362 (673)
+.++++++++.+.++.+++.+.+
T Consensus 10 ~wiIi~s~l~GLllL~li~~~Lw 32 (42)
T 2k1a_A 10 IWWVLVGVLGGLLLLTILVLAMW 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554444444333
No 464
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=24.93 E-value=2.4e+02 Score=32.44 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=37.3
Q ss_pred ChHHHHhcCCCCccchHHH-HHHHHHHHH--HHHHHHhhcCCCCeEEecCCCCCeEeCCCCceEEeccccee
Q 005864 487 SLAEILSNDGSIKEFSWIV-RTNVIKSVA--NALSYMHHDCFPPIVHRDISSKNVLLSSEYEARVSDFGIAK 555 (673)
Q Consensus 487 sL~~~l~~~~~~~~l~~~~-~~~i~~~i~--~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg~~~ 555 (673)
.|.+|+.... ....|.. +...+.++| ..+.|+=. -+|=.++|||++.+|++.=+|||.+.
T Consensus 899 ~L~~~f~~~~--~~~~~~~ar~nF~~S~A~ysvv~YiLg-------igDRH~~NILid~tG~v~HIDFG~~f 961 (1091)
T 3hhm_A 899 TLHQWLKDKN--KGEIYDAAIDLFTRSCAGYCVATFILG-------IGDRHNSNIMVKDDGQLFHIDFGHFL 961 (1091)
T ss_dssp HHHHHHHTTS--CTTSHHHHHHHHHHHHHHHHHHHHHHT-------CCCCCTTTEEEETTSCEEECCCCCCS
T ss_pred HHHHHHHhcC--ChHHHHHHHHHHHHHhhhhhheEEEEe-------ecCCCCcceEEeCCCCEEEEeehhhh
Confidence 4555655443 2233443 334444433 23344443 25778899999999999999999984
No 465
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=22.61 E-value=2e+02 Score=27.93 Aligned_cols=137 Identities=13% Similarity=0.110 Sum_probs=71.5
Q ss_pred cceeccCCcEEEEEEEeCCCCEEEEEeeccchhhhhHHHHHHHHHHHHHhccCCCcccceeee-----------------
Q 005864 407 EQCIGIGGQASVYRGELPSGEVVAVKKFHSLLLSEISVQREFLNEIKALTEIRHRNIVKFYGF----------------- 469 (673)
Q Consensus 407 ~~~ig~G~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~----------------- 469 (673)
++..-.|.. -||.... ++..|+||-.. .-..+.+..++...-.+.-|+..-+.-.
T Consensus 74 I~~s~~Gst-gvff~~t-d~~~~VVK~s~------~l~~E~l~s~LA~~LGlpiP~~Riv~~~~~E~~e~~~~L~~~~~~ 145 (342)
T 1cja_A 74 IERSEKGTE-GLFFVET-ESGVFIVKRST------NIESETFCSLLCMRLGLHAPKVRVVSSNSEEGTNMLECLAAIDKS 145 (342)
T ss_dssp EEECCSTTS-CEEEEEE-SSCEEEEECCT------THHHHHHHHHHHHHHTCCCCCEEEEESSSHHHHHHHHHHHHHCSS
T ss_pred EEeccCCCC-CeEEEEe-CCCEEEEeCcH------HHHHHHHHHHHHHHhCCCCCCeeEEeeCcHHHHHHHHHHHHhhhh
Confidence 344455654 4555544 58889999542 1134455556666666666653222211
Q ss_pred e-----ecCCeeeEEEecccCCChHHHHhcCCCCccchHHHHHHHHHHH--HHHHHHHhhcCCC-CeE-EecCCCCCeEe
Q 005864 470 C-----SHPRHSFLVYECLERGSLAEILSNDGSIKEFSWIVRTNVIKSV--ANALSYMHHDCFP-PIV-HRDISSKNVLL 540 (673)
Q Consensus 470 ~-----~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i--~~~l~~LH~~~~~-~iv-H~dlk~~Nill 540 (673)
. ......+++|||.+|..|.+.-.... ...+. .+.+.++ .-+++.+..+..+ +.+ +.--.++|||+
T Consensus 146 ~~~l~~l~~~~~~l~meyv~G~~L~e~~~~~~-~~~f~----~~~~k~LG~Ii~FDi~InN~DR~Pl~W~n~GN~~NIL~ 220 (342)
T 1cja_A 146 FRVITTLANQANILLMELVRGITLNKLTTTSA-PEVLT----KSTMQQLGSLMALDVIVNNSDRLPIAWTNEGNLDNIML 220 (342)
T ss_dssp SCHHHHHTTCSEEEEEECCCEEESTTCCSSSH-HHHSC----HHHHHHHHHHHHHHHHHTCCSSSCSSSCSCCCGGGEEE
T ss_pred hHHHHHhhcccceehhhhcCCCccccchhhhh-hhhcC----HHHHHhhchhheehhhhcCCccCcccccCCCChhheEE
Confidence 0 01224569999999876654322110 01122 1223333 2344555554331 111 12247899999
Q ss_pred CCCCc-eEEecccceee
Q 005864 541 SSEYE-ARVSDFGIAKF 556 (673)
Q Consensus 541 ~~~~~-~kl~Dfg~~~~ 556 (673)
++++. +.++|-+.+..
T Consensus 221 ~~~n~~~~~IDhn~af~ 237 (342)
T 1cja_A 221 SERGATVVPIDSKIIPL 237 (342)
T ss_dssp ESBTTCEEECSCCCCCC
T ss_pred eCCCCeEEEEcCCcccc
Confidence 87554 88999988854
Done!