BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005865
(673 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1II2|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
(Pepck) From Trypanosoma Cruzi
pdb|1II2|B Chain B, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
(Pepck) From Trypanosoma Cruzi
Length = 524
Score = 450 bits (1158), Expect = e-126, Method: Compositional matrix adjust.
Identities = 227/508 (44%), Positives = 317/508 (62%), Gaps = 4/508 (0%)
Query: 156 NLSPAELYEQAVKYEKGSFITSSGALATLSGAKTGRSPRDKRVVKDETTERELWWGKGSP 215
NL EL + A+K EK S +T+ GALA +S AKTGRSP DKR+V + + WGK
Sbjct: 7 NLLSPELVQWALKIEKDSRLTARGALAVMSYAKTGRSPLDKRIVDTDDVRENVDWGK--V 64
Query: 216 NIEMDEHTFLVNRERAVDYLNSLDKVFVNDQFLNWDPEHRIKVRIVSARAYHSLFMHNMC 275
N+++ E +F R+ A ++L++ + +FV D F D +R+KVR+ + R YH+LFM +M
Sbjct: 65 NMKLSEESFARVRKIAKEFLDTREHLFVVDCFAGHDERYRLKVRVFTTRPYHALFMRDML 124
Query: 276 IRPTSEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMK 335
I PT EEL FG PD+ IYNAG+ + +TS+T + +N +E VILGT+YAGEMK
Sbjct: 125 IVPTPEELATFGEPDYVIYNAGECKADPSIPGLTSTTCVALNFKTREQVILGTEYAGEMK 184
Query: 336 KGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHC 395
KG+ ++M LMP+ L +H+ N+GK GDV D +R LIGDDEH
Sbjct: 185 KGILTVMFELMPQMNHLCMHASANVGKQGDVTVFFGLSGTGKTTLSADPHRNLIGDDEHV 244
Query: 396 WSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTEN 455
W+D GV NIEGGCYAK I L+ + E DI++A++FG V EN V D+ T E+D+ D+S+ +N
Sbjct: 245 WTDRGVFNIEGGCYAKAIGLNPKTEKDIYDAVRFGAVAENCVLDKRTGEIDFYDESICKN 304
Query: 456 TRAAYPIEYIPNAKIPCVGPHPKNIILLACDAFGVLPPVSKLSLEQTMYHFISGYTALVA 515
TR AYP+ +I A + HPKN+I L DAFGV+PPV++L+ Q M+ F+ GYTA V
Sbjct: 305 TRVAYPLSHIEGALSKAIAGHPKNVIFLTNDAFGVMPPVARLTSAQAMFWFVMGYTANVP 364
Query: 516 GTEE-GVKEPRATFSACFGAAFIMLHPTKYAAMLAEKMQKHGATGWLVNTGWSGGSYGSG 574
G E G + R FS+CFG F++ H T Y LAEKMQKH + WL+NTG++GG G
Sbjct: 365 GVEAGGTRTARPIFSSCFGGPFLVRHATFYGEQLAEKMQKHNSRVWLLNTGYAGGRADRG 424
Query: 575 -NRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAY 633
R+ L TR IIDAIH GTL Y + P +GL IP + VP +L+P W D++ +
Sbjct: 425 AKRMPLRVTRAIIDAIHDGTLDRTEYEEYPGWGLHIPKYVAKVPEHLLNPRKAWKDVRQF 484
Query: 634 KDTLLKLGTLFKKNFEGFVNHKIGEDNK 661
+T +L +F+++F K ++ K
Sbjct: 485 NETSKELVAMFQESFSARFAAKASQEMK 512
>pdb|1J3B|A Chain A, Crystal Structure Of Atp-dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|1J3B|B Chain B, Crystal Structure Of Atp-dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|1XKV|A Chain A, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|1XKV|B Chain B, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|2PC9|A Chain A, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|2PC9|B Chain B, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|2PC9|C Chain C, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|2PC9|D Chain D, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
Length = 529
Score = 427 bits (1099), Expect = e-120, Method: Compositional matrix adjust.
Identities = 225/525 (42%), Positives = 310/525 (59%), Gaps = 17/525 (3%)
Query: 152 HVLYNLSPAELYEQAVKYEKGSFITSSGALATLSGAKTGRSPRDKRVVKDETTERELWWG 211
V +N L E + +G + G L + TGRSP+DK VV++ E E+WWG
Sbjct: 14 RVFWNTVSPVLVEHTLLRGEG-LLAHHGPLVVDTTPYTGRSPKDKFVVREPEVEGEIWWG 72
Query: 212 KGSPNIEMDEHTFLVNRERAVDYLNSLDKVFVNDQFLNWDPEHRIKVRIVSARAYHSLFM 271
+ N F +R V YL+ D ++V D + D +R+ VR+V+ +H+LF
Sbjct: 73 EV--NQPFAPEAFEALYQRVVQYLSERD-LYVQDLYAGADRRYRLAVRVVTESPWHALFA 129
Query: 272 HNMCIRP----TSEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARKEMVILG 327
NM I P +E+E F P FT+ +A F S + I+ R+ ++I+G
Sbjct: 130 RNMFILPRRFGNDDEVEAF-VPGFTVVHAPYFQAVPERDGTRSEVFVGISFQRRLVLIVG 188
Query: 328 TQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRY 387
T+YAGE+KK +F++M+YLMPKR + +H+ N+GK+GDVA D R
Sbjct: 189 TKYAGEIKKSIFTVMNYLMPKRGVFPMHASANVGKEGDVAVFFGLSGTGKTTLSTDPERP 248
Query: 388 LIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAI-KFGTVLENIVFDEHTREVD 446
LIGDDEH WS++GV N EGGCYAK I LS E EP I+ A +F +LEN+V + +R V
Sbjct: 249 LIGDDEHGWSEDGVFNFEGGCYAKVIRLSPEHEPLIYKASNQFEAILENVVVNPESRRVQ 308
Query: 447 YLDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNIILLACDAFGVLPPVSKLSLEQTMYHF 506
+ D S TENTR++YPI ++ N V HP+ I L+ DA+GVLPP+++LS E+ MY+F
Sbjct: 309 WDDDSKTENTRSSYPIAHLENVVESGVAGHPRAIFFLSADAYGVLPPIARLSPEEAMYYF 368
Query: 507 ISGYTALVAGTEEGVKEPRATFSACFGAAFIMLHPTKYAAMLAEKMQKHGATGWLVNTGW 566
+SGYTA VAGTE GV EPRATFSACFGA F+ +HP YA ML EK++KH +LVNTGW
Sbjct: 369 LSGYTARVAGTERGVTEPRATFSACFGAPFLPMHPGVYARMLGEKIRKHAPRVYLVNTGW 428
Query: 567 SGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENT 626
+GG YG G R L TR ++ A G L Y + PVFG E+P E GVP E+L+P T
Sbjct: 429 TGGPYGVGYRFPLPVTRALLKAALSGALENVPYRRDPVFGFEVPLEAPGVPQELLNPRET 488
Query: 627 WSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGP 671
W+D +AY KL LF++NF+ + + + E+ AGP
Sbjct: 489 WADKEAYDQQARKLARLFQENFQKYA-------SGVAKEVAEAGP 526
>pdb|1AYL|A Chain A, Phosphoenolpyruvate Carboxykinase
Length = 541
Score = 411 bits (1057), Expect = e-115, Method: Compositional matrix adjust.
Identities = 231/535 (43%), Positives = 320/535 (59%), Gaps = 35/535 (6%)
Query: 153 VLYNLSPAELYEQAVK-----YEKGSFITSSGALATLSGAKTGRSPRDKRVVKDETTERE 207
++YN S LY++ + YE+G +T+ GA+A +G TGRSP+DK +V+D+TT
Sbjct: 23 IVYNPSYDLLYQEELDPSLTGYERG-VLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDT 81
Query: 208 LWW---GKG-SPNIEMDEHTF-----LVNRERAVDYLNSLDKVFVNDQFLNWDPEHRIKV 258
WW GKG + N + T+ LV R+ S ++FV D F +P+ R+ V
Sbjct: 82 FWWADKGKGKNDNKPLSPETWQHLKGLVTRQL------SGKRLFVVDAFCGANPDTRLSV 135
Query: 259 RIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHY-MTSSTSIDIN 317
R ++ A+ + F+ NM IRP+ EEL F PDF + N + ++ + S + N
Sbjct: 136 RFITEVAWQAHFVKNMFIRPSDEELAGF-KPDFIVMNGAKCTNPQWKEQGLNSENFVAFN 194
Query: 318 LARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXX 377
L + +I GT Y GEMKKG+FS+M+YL+P + I S+H N+G+ GDVA
Sbjct: 195 LTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGK 254
Query: 378 XXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIV 437
D R LIGDDEH W D+GV N EGGCYAK I LS+E EP+I+NAI+ +LEN+
Sbjct: 255 TTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPEIYNAIRRDALLENVT 314
Query: 438 FDEHTREVDYLDKSVTENTRAAYPIEYIPNAKIPCV-GPHPKNIILLACDAFGVLPPVSK 496
E +D+ D S TENTR +YPI +I N P H +I L DAFGVLPPVS+
Sbjct: 315 VREDG-TIDFDDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLPPVSR 373
Query: 497 LSLEQTMYHFISGYTALVAGTEEGVKEPRATFSACFGAAFIMLHPTKYAAMLAEKMQKHG 556
L+ +QT YHF+SG+TA +AGTE G+ EP TFSACFGAAF+ LHPT+YA +L ++MQ G
Sbjct: 374 LTADQTQYHFLSGFTAKLAGTERGITEPTPTFSACFGAAFLSLHPTQYAEVLVKRMQAAG 433
Query: 557 ATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGV 616
A +LVNTGW+ G+G RI + TR IIDAI G+L A P+F L IPTE+ GV
Sbjct: 434 AQAYLVNTGWN----GTGKRISIKDTRAIIDAILNGSLDNAETFTLPMFNLAIPTELPGV 489
Query: 617 PSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGP 671
++ILDP NT++ + +++ L LF NF+ + + G ++AAGP
Sbjct: 490 DTKILDPRNTYASPEQWQEKAETLAKLFIDNFDKYTDTPAGA------ALVAAGP 538
>pdb|1K3C|A Chain A, Phosphoenolpyruvate Carboxykinase In Complex With Adp,
Alf3 And Pyruvate
pdb|1K3D|A Chain A, Phosphoenolpyruvate Carboxykinase In Complex With Adp And
Alf3
pdb|1OS1|A Chain A, Structure Of Phosphoenolpyruvate Carboxykinase Complexed
With Atp,Mg, Ca And Pyruvate.
pdb|2OLQ|A Chain A, How Does An Enzyme Recognize Co2?
pdb|2OLR|A Chain A, Crystal Structure Of Escherichia Coli Phosphoenolpyruvate
Carboxykinase Complexed With Carbon Dioxide, Mg2+, Atp
pdb|1AQ2|A Chain A, Phosphoenolpyruvate Carboxykinase
pdb|2PXZ|X Chain X, E. Coli Phosphoenolpyruvate Carboxykinase (Pepck)
Complexed With Atp, Mg2+, Mn2+, Carbon Dioxide And
Oxaloacetate
Length = 540
Score = 411 bits (1056), Expect = e-115, Method: Compositional matrix adjust.
Identities = 231/535 (43%), Positives = 320/535 (59%), Gaps = 35/535 (6%)
Query: 153 VLYNLSPAELYEQAVK-----YEKGSFITSSGALATLSGAKTGRSPRDKRVVKDETTERE 207
++YN S LY++ + YE+G +T+ GA+A +G TGRSP+DK +V+D+TT
Sbjct: 23 IVYNPSYDLLYQEELDPSLTGYERG-VLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDT 81
Query: 208 LWW---GKG-SPNIEMDEHTF-----LVNRERAVDYLNSLDKVFVNDQFLNWDPEHRIKV 258
WW GKG + N + T+ LV R+ S ++FV D F +P+ R+ V
Sbjct: 82 FWWADKGKGKNDNKPLSPETWQHLKGLVTRQL------SGKRLFVVDAFCGANPDTRLSV 135
Query: 259 RIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHY-MTSSTSIDIN 317
R ++ A+ + F+ NM IRP+ EEL F PDF + N + ++ + S + N
Sbjct: 136 RFITEVAWQAHFVKNMFIRPSDEELAGF-KPDFIVMNGAKCTNPQWKEQGLNSENFVAFN 194
Query: 318 LARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXX 377
L + +I GT Y GEMKKG+FS+M+YL+P + I S+H N+G+ GDVA
Sbjct: 195 LTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGK 254
Query: 378 XXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIV 437
D R LIGDDEH W D+GV N EGGCYAK I LS+E EP+I+NAI+ +LEN+
Sbjct: 255 TTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPEIYNAIRRDALLENVT 314
Query: 438 FDEHTREVDYLDKSVTENTRAAYPIEYIPNAKIPCV-GPHPKNIILLACDAFGVLPPVSK 496
E +D+ D S TENTR +YPI +I N P H +I L DAFGVLPPVS+
Sbjct: 315 VREDG-TIDFDDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLPPVSR 373
Query: 497 LSLEQTMYHFISGYTALVAGTEEGVKEPRATFSACFGAAFIMLHPTKYAAMLAEKMQKHG 556
L+ +QT YHF+SG+TA +AGTE G+ EP TFSACFGAAF+ LHPT+YA +L ++MQ G
Sbjct: 374 LTADQTQYHFLSGFTAKLAGTERGITEPTPTFSACFGAAFLSLHPTQYAEVLVKRMQAAG 433
Query: 557 ATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGV 616
A +LVNTGW+ G+G RI + TR IIDAI G+L A P+F L IPTE+ GV
Sbjct: 434 AQAYLVNTGWN----GTGKRISIKDTRAIIDAILNGSLDNAETFTLPMFNLAIPTELPGV 489
Query: 617 PSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGP 671
++ILDP NT++ + +++ L LF NF+ + + G ++AAGP
Sbjct: 490 DTKILDPRNTYASPEQWQEKAETLAKLFIDNFDKYTDTPAGA------ALVAAGP 538
>pdb|2PY7|X Chain X, Crystal Structure Of E. Coli Phosphoenolpyruvate
Carboxykinase Mutant Lys213ser Complexed With
Atp-mg2+-mn2+
Length = 540
Score = 409 bits (1051), Expect = e-114, Method: Compositional matrix adjust.
Identities = 230/535 (42%), Positives = 319/535 (59%), Gaps = 35/535 (6%)
Query: 153 VLYNLSPAELYEQAVK-----YEKGSFITSSGALATLSGAKTGRSPRDKRVVKDETTERE 207
++YN S LY++ + YE+G +T+ GA+A +G TGRSP+DK +V+D+TT
Sbjct: 23 IVYNPSYDLLYQEELDPSLTGYERG-VLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDT 81
Query: 208 LWW---GKG-SPNIEMDEHTF-----LVNRERAVDYLNSLDKVFVNDQFLNWDPEHRIKV 258
WW GKG + N + T+ LV R+ S ++FV D F +P+ R+ V
Sbjct: 82 FWWADKGKGKNDNKPLSPETWQHLKGLVTRQL------SGKRLFVVDAFCGANPDTRLSV 135
Query: 259 RIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHY-MTSSTSIDIN 317
R ++ A+ + F+ NM IRP+ EEL F PDF + N + ++ + S + N
Sbjct: 136 RFITEVAWQAHFVKNMFIRPSDEELAGF-KPDFIVMNGAKCTNPQWKEQGLNSENFVAFN 194
Query: 318 LARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXX 377
L + +I GT Y GEMK G+FS+M+YL+P + I S+H N+G+ GDVA
Sbjct: 195 LTERMQLIGGTWYGGEMKSGMFSMMNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGK 254
Query: 378 XXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIV 437
D R LIGDDEH W D+GV N EGGCYAK I LS+E EP+I+NAI+ +LEN+
Sbjct: 255 TTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPEIYNAIRRDALLENVT 314
Query: 438 FDEHTREVDYLDKSVTENTRAAYPIEYIPNAKIPCV-GPHPKNIILLACDAFGVLPPVSK 496
E +D+ D S TENTR +YPI +I N P H +I L DAFGVLPPVS+
Sbjct: 315 VREDG-TIDFDDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLPPVSR 373
Query: 497 LSLEQTMYHFISGYTALVAGTEEGVKEPRATFSACFGAAFIMLHPTKYAAMLAEKMQKHG 556
L+ +QT YHF+SG+TA +AGTE G+ EP TFSACFGAAF+ LHPT+YA +L ++MQ G
Sbjct: 374 LTADQTQYHFLSGFTAKLAGTERGITEPTPTFSACFGAAFLSLHPTQYAEVLVKRMQAAG 433
Query: 557 ATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGV 616
A +LVNTGW+ G+G RI + TR IIDAI G+L A P+F L IPTE+ GV
Sbjct: 434 AQAYLVNTGWN----GTGKRISIKDTRAIIDAILNGSLDNAETFTLPMFNLAIPTELPGV 489
Query: 617 PSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGP 671
++ILDP NT++ + +++ L LF NF+ + + G ++AAGP
Sbjct: 490 DTKILDPRNTYASPEQWQEKAETLAKLFIDNFDKYTDTPAGA------ALVAAGP 538
>pdb|1YVY|A Chain A, Crystal Strucutre Of Anaerobiospirillum Succiniciproducens
Phosphoenolpyruvate Carboxykinase
pdb|1YVY|B Chain B, Crystal Strucutre Of Anaerobiospirillum Succiniciproducens
Phosphoenolpyruvate Carboxykinase
pdb|1YTM|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase Of
Anaerobiospirillum Succiniciproducens Complexed With
Atp, Oxalate, Magnesium And Manganese Ions
pdb|1YTM|B Chain B, Crystal Structure Of Phosphoenolpyruvate Carboxykinase Of
Anaerobiospirillum Succiniciproducens Complexed With
Atp, Oxalate, Magnesium And Manganese Ions
Length = 532
Score = 405 bits (1040), Expect = e-113, Method: Compositional matrix adjust.
Identities = 229/546 (41%), Positives = 327/546 (59%), Gaps = 33/546 (6%)
Query: 142 NISDSALKF-----THVLYNLSPAELYEQAVK-----YEKGSFITSSGALATLSGAKTGR 191
++S+S K+ T++++N S EL+ + +EKG+ +T GA+ ++G TGR
Sbjct: 2 SLSESLAKYGITGATNIVHNPSHEELFAAETQASLEGFEKGT-VTEMGAVNVMTGVYTGR 60
Query: 192 SPRDKRVVKDETTERELWWGKG---SPNIEMDEHTFLVNRERAVDYLNSLDKVFVNDQFL 248
SP+DK +VK+E + +E+WW + N + E + + A L++ ++V D F
Sbjct: 61 SPKDKFIVKNEAS-KEIWWTSDEFKNDNKPVTEEAWAQLKALAGKELSN-KPLYVVDLFC 118
Query: 249 NWDPEHRIKVRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHY- 307
+ R+K+R V A+ + F+ NM IRPT EEL+ F PDF + NA + +
Sbjct: 119 GANENTRLKIRFVMEVAWQAHFVTNMFIRPTEEELKGF-EPDFVVLNASKAKVENFKELG 177
Query: 308 MTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDG-DV 366
+ S T++ NLA K +IL T Y GEMKKG+FS+M++ +P + I ++H N +G +
Sbjct: 178 LNSETAVVFNLAEKMQIILNTWYGGEMKKGMFSMMNFYLPLQGIAAMHCSANTDLEGKNT 237
Query: 367 AXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNA 426
A D R LIGDDEH W D+GV N EGGCYAK I+LS+E EPDIW A
Sbjct: 238 AIFFGLSGTGKTTLSTDPKRLLIGDDEHGWDDDGVFNFEGGCYAKVINLSKENEPDIWGA 297
Query: 427 IKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYIPNAKIPCV-GPHPKNIILLAC 485
IK +LEN+ D + + VD+ DKSVTENTR +YPI +I N P P K +I L+
Sbjct: 298 IKRNALLENVTVDANGK-VDFADKSVTENTRVSYPIFHIKNIVKPVSKAPAAKRVIFLSA 356
Query: 486 DAFGVLPPVSKLSLEQTMYHFISGYTALVAGTEEGVKEPRATFSACFGAAFIMLHPTKYA 545
DAFGVLPPVS LS EQT Y+F+SG+TA +AGTE G+ EP TFS+CFGAAF+ L PTKYA
Sbjct: 357 DAFGVLPPVSILSKEQTKYYFLSGFTAKLAGTERGITEPTPTFSSCFGAAFLTLPPTKYA 416
Query: 546 AMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVF 605
+L ++M+ GA +LVNTGW+ G+G RI + TR IIDAI G++ A+ P F
Sbjct: 417 EVLVKRMEASGAKAYLVNTGWN----GTGKRISIKDTRGIIDAILDGSIDTANTATIPYF 472
Query: 606 GLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDE 665
+PTE++GV ++ILDP NT++D ++ L F+KNF+ F L +
Sbjct: 473 NFTVPTELKGVDTKILDPRNTYADASEWEVKAKDLAERFQKNFKKF--------ESLGGD 524
Query: 666 ILAAGP 671
++ AGP
Sbjct: 525 LVKAGP 530
>pdb|1OEN|A Chain A, Phosphoenolpyruvate Carboxykinase
Length = 540
Score = 402 bits (1033), Expect = e-112, Method: Compositional matrix adjust.
Identities = 229/535 (42%), Positives = 314/535 (58%), Gaps = 35/535 (6%)
Query: 153 VLYNLSPAELYEQAVK-----YEKGSFITSSGALATLSGAKTGRSPRDKRVVKDETTERE 207
++YN S LY++ + YE+G +T+ GA+A +G TGRSP+DK +V+D+TT
Sbjct: 23 IVYNPSYDLLYQEELDPSLTGYERG-VLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDT 81
Query: 208 LWW---GKG-SPNIEMDEHTF-----LVNRERAVDYLNSLDKVFVNDQFLNWDPEHRIKV 258
WW GKG + N + T+ LV R+ S ++FV D F +P+ R+ V
Sbjct: 82 FWWADKGKGKNDNKPLSPETWQHLKGLVTRQL------SGKRLFVVDAFCGANPDTRLSV 135
Query: 259 RIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHY-MTSSTSIDIN 317
R ++ A+ + F+ NM IRP+ EEL F PDF + N + ++ + S + N
Sbjct: 136 RFITEVAWQAHFVKNMFIRPSDEELAGF-KPDFIVMNGAKCTNPQWKEQGLNSENFVAFN 194
Query: 318 LARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXX 377
L + +I GT Y GEMKKG+FS+M+YL+P + I S+H N+G+ GDVA
Sbjct: 195 LTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEAGDVAVFFGLSGSGK 254
Query: 378 XXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIV 437
D R LIGDDEH W D+GV N EGG YAK I LS+E EP+I+ AI+ +LEN+
Sbjct: 255 TTLSTDPARRLIGDDEHGWDDDGVFNFEGGSYAKTIKLSKEAEPEIYAAIRRDALLENVT 314
Query: 438 FDEHTREVDYLDKSVTENTRAAYPIEYIPNAKIPCV-GPHPKNIILLACDAFGVLPPVSK 496
+D+ D S TENTR +YPI +I N P H +I L DAFGVLPPVS+
Sbjct: 315 V-RAGGTIDFDDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLPPVSR 373
Query: 497 LSLEQTMYHFISGYTALVAGTEEGVKEPRATFSACFGAAFIMLHPTKYAAMLAEKMQKHG 556
L+ +QT YHF+SG+TA AGTE G+ EP TFSACFGAAF+ LHPT+YA +L ++MQ G
Sbjct: 374 LTADQTQYHFLSGFTAAAAGTERGITEPTPTFSACFGAAFLSLHPTQYAEVLVKRMQAAG 433
Query: 557 ATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGV 616
A +LVNTGW+ G+G RI A TR IIDAI G+L A P+F L IPTE+ GV
Sbjct: 434 AQAYLVNTGWN----GTGKRISAADTRAIIDAILNGSLDNAETFTLPMFNLAIPTELPGV 489
Query: 617 PSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGP 671
+ ILDP NT++ +++ L LF NF+ + + G ++AAGP
Sbjct: 490 DTGILDPRNTYASPAGWQEKAETLAKLFIDNFDKYTDTPAGA------ALVAAGP 538
>pdb|1YGG|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
From Actinobacillus Succinogenes
pdb|1YLH|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
From Actinobaccilus Succinogenes In Complex With
Manganese And Pyruvate
Length = 560
Score = 402 bits (1032), Expect = e-112, Method: Compositional matrix adjust.
Identities = 225/509 (44%), Positives = 307/509 (60%), Gaps = 22/509 (4%)
Query: 152 HVLYNLSPAELYEQAVK-----YEKGSFITSSGALATLSGAKTGRSPRDKRVVKDETTER 206
++YN S +L+E+ K ++KG+ +T+ GA+A +G TGRSP+DK +V DETT+
Sbjct: 43 EIVYNPSYEQLFEEETKPGLEGFDKGT-LTTLGAVAVDTGIFTGRSPKDKYIVCDETTKD 101
Query: 207 ELWWGKGSP---NIEMDEHTFLVNRERAVDYLNSLDKVFVNDQFLNWDPEHRIKVRIVSA 263
+WW + N M + T+ RE L S ++FV + + +HRI VR+V+
Sbjct: 102 TVWWNSEAAKNDNKPMTQETWKSLRELVAKQL-SGKRLFVVEGYCGASEKHRIGVRMVTE 160
Query: 264 RAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPC---NRYTHYMTSSTSIDINLAR 320
A+ + F+ NM IRPT EEL++F DFT+ N + C N + S + N+
Sbjct: 161 VAWQAHFVKNMFIRPTDEELKNF-KADFTVLNGAK--CTNPNWKEQGLNSENFVAFNITE 217
Query: 321 KEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXX 380
+I GT Y GEMKKG+FS+M+Y +P + + S+H N+GKDGDVA
Sbjct: 218 GIQLIGGTWYGGEMKKGMFSMMNYFLPLKGVASMHCSANVGKDGDVAIFFGLSGTGKTTL 277
Query: 381 XXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDE 440
D R LIGDDEH W ++GV N EGGCYAK I+LS+E EPDI+ AI+ +LEN+V
Sbjct: 278 STDPKRQLIGDDEHGWDESGVFNFEGGCYAKTINLSQENEPDIYGAIRRDALLENVVV-R 336
Query: 441 HTREVDYLDKSVTENTRAAYPIEYIPNAKIPCV-GPHPKNIILLACDAFGVLPPVSKLSL 499
VD+ D S TENTR +YPI +I N P H +I L DAFGVLPPVSKL+
Sbjct: 337 ADGSVDFDDGSKTENTRVSYPIYHIDNIVRPVSKAGHATKVIFLTADAFGVLPPVSKLTP 396
Query: 500 EQTMYHFISGYTALVAGTEEGVKEPRATFSACFGAAFIMLHPTKYAAMLAEKMQKHGATG 559
EQT Y+F+SG+TA +AGTE GV EP TFSACFGAAF+ LHP +YA +L E+M+ GA
Sbjct: 397 EQTEYYFLSGFTAKLAGTERGVTEPTPTFSACFGAAFLSLHPIQYADVLVERMKASGAEA 456
Query: 560 WLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSE 619
+LVNTGW+ G+G RI + TR IIDAI G++ +A + P+F L IP + GV
Sbjct: 457 YLVNTGWN----GTGKRISIKDTRGIIDAILDGSIEKAEMGELPIFNLAIPKALPGVDPA 512
Query: 620 ILDPENTWSDMKAYKDTLLKLGTLFKKNF 648
ILDP +T++D ++ L F KNF
Sbjct: 513 ILDPRDTYADKAQWQVKAEDLANRFVKNF 541
>pdb|3KT7|A Chain A, Crystal Structure Of Tpa1 From Saccharomyces Cerevisiae, A
Component Of The Messenger Ribonucleoprotein Complex
Length = 633
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 110 KVVKGDPATPRKVDGQPSAHSFHYTSTPTFDDNISDSALKFTHVLYNLSPAELYEQAVKY 169
K++KGD K D P + T D++ S +FT++ +SP L + ++
Sbjct: 283 KMLKGDAGA--KTDNTPKE-----SMTSVISDSVKLSEAEFTYLSQYISPEHLSSKGIEK 335
Query: 170 EKGSFITSSGALATLSGAKTGRSPRDKRVVKDETTERE 207
+ F+ +S +L S +S K+V+K + E+E
Sbjct: 336 LQKQFVENS-SLQIESFLNDDKSELLKKVIKQKELEQE 372
>pdb|3KT1|A Chain A, Crystal Structure Of Tpa1 From Saccharomyces Cerevisiae, A
Component Of The Messenger Ribonucleoprotein Complex
Length = 633
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 110 KVVKGDPATPRKVDGQPSAHSFHYTSTPTFDDNISDSALKFTHVLYNLSPAELYEQAVKY 169
K++KGD K D P + T D++ S +FT++ +SP L + ++
Sbjct: 283 KMLKGDAGA--KTDNTPKE-----SMTSVISDSVKLSEAEFTYLSQYISPEHLSSKGIEK 335
Query: 170 EKGSFITSSGALATLSGAKTGRSPRDKRVVKDETTERE 207
+ F+ +S +L S +S K+V+K + E+E
Sbjct: 336 LQKQFVENS-SLQIESFLNDDKSELLKKVIKQKELEQE 372
>pdb|3MGU|A Chain A, Saccharomyces Cerevisiae Tpa1
Length = 644
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 110 KVVKGDPATPRKVDGQPSAHSFHYTSTPTFDDNISDSALKFTHVLYNLSPAELYEQAVKY 169
K++KGD K D P + T D++ S +FT++ +SP L + ++
Sbjct: 302 KMLKGDAGA--KTDNTPKE-----SMTSVISDSVKLSEAEFTYLSQYISPEHLSSKGIEK 354
Query: 170 EKGSFITSSGALATLSGAKTGRSPRDKRVVKDETTERE 207
+ F+ +S +L S +S K+V+K + E+E
Sbjct: 355 LQKQFVENS-SLQIESFLNDDKSELLKKVIKQKELEQE 391
>pdb|3KT4|A Chain A, Crystal Structure Of Tpa1 From Saccharomyces Cerevisiae, A
Component Of The Messenger Ribonucleoprotein Complex
Length = 633
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 110 KVVKGDPATPRKVDGQPSAHSFHYTSTPTFDDNISDSALKFTHVLYNLSPAELYEQAVKY 169
K +KGD K D P + T D++ S +FT++ +SP L + ++
Sbjct: 283 KXLKGDAGA--KTDNTPKE-----SXTSVISDSVKLSEAEFTYLSQYISPEHLSSKGIEK 335
Query: 170 EKGSFITSSGALATLSGAKTGRSPRDKRVVKDETTERE 207
+ F+ +S +L S +S K+V+K + E+E
Sbjct: 336 LQKQFVENS-SLQIESFLNDDKSELLKKVIKQKELEQE 372
>pdb|3QFT|A Chain A, Crystal Structure Of Nadph-Cytochrome P450 Reductase
(FadNADPH DOMAIN And R457h Mutant)
Length = 458
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 388 LIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDY 447
L D EH W IEGG + +R D+ N F ++ + EH + VDY
Sbjct: 390 LKQDREHLWK-----LIEGGAHIYVCGDARNMARDVQNT--FYDIVAELGAMEHAQAVDY 442
Query: 448 LDKSVTE 454
+ K +T+
Sbjct: 443 IKKLMTK 449
>pdb|3QFS|A Chain A, Crystal Structure Of Nadph-Cytochrome P450 Reductase
(FadNADPH Domain)
Length = 458
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 388 LIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDY 447
L D EH W IEGG + +R D+ N F ++ + EH + VDY
Sbjct: 390 LKQDREHLWK-----LIEGGAHIYVCGDARNMARDVQNT--FYDIVAELGAMEHAQAVDY 442
Query: 448 LDKSVTE 454
+ K +T+
Sbjct: 443 IKKLMTK 449
>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt
From Mycobacterium Marinum Covalently Bound To Pyridoxal
Phosphate
Length = 467
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 135 STPTFDDNISDSALKFTHVLYNLSPAELY----EQAVKY-----EKGSFITSSGALATLS 185
S P D + D +FTH + ++P E Y EQ + EK + + +SGA A +
Sbjct: 95 SAPRVVDAVRDQVEQFTHTCFMVTPYEQYVAVAEQLNRITPGSGEKRTVLFNSGAEAVEN 154
Query: 186 GAKTGRSPRDKRVV 199
K R+ K+ V
Sbjct: 155 SIKVARAHTRKQAV 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,252,653
Number of Sequences: 62578
Number of extensions: 851607
Number of successful extensions: 2009
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1964
Number of HSP's gapped (non-prelim): 21
length of query: 673
length of database: 14,973,337
effective HSP length: 105
effective length of query: 568
effective length of database: 8,402,647
effective search space: 4772703496
effective search space used: 4772703496
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)