Query 005865
Match_columns 673
No_of_seqs 217 out of 799
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 09:33:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005865.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005865hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ii2_A Phosphoenolpyruvate car 100.0 3E-160 1E-164 1322.2 47.6 514 151-673 2-518 (524)
2 2olr_A Phosphoenolpyruvate car 100.0 2E-157 6E-162 1298.9 53.0 512 143-673 12-540 (540)
3 1ytm_A Phosphoenolpyruvate car 100.0 6E-156 2E-160 1288.9 51.3 512 143-673 7-532 (532)
4 1j3b_A ATP-dependent phosphoen 100.0 3E-150 9E-155 1243.4 51.4 519 143-673 4-528 (529)
5 2faf_A Phosphoenolpyruvate car 100.0 7E-32 2.4E-36 297.2 34.4 475 149-668 24-596 (608)
6 2zci_A Phosphoenolpyruvate car 100.0 4E-31 1.4E-35 291.8 38.7 485 149-668 32-596 (610)
7 3moe_A Phosphoenolpyruvate car 100.0 2.1E-28 7.3E-33 269.9 30.7 479 149-667 41-611 (624)
8 3tqf_A HPR(Ser) kinase; transf 97.2 9.1E-05 3.1E-09 72.5 1.8 44 351-395 4-50 (181)
9 1knx_A Probable HPR(Ser) kinas 97.1 0.00017 5.8E-09 75.9 2.2 47 350-397 134-183 (312)
10 1ko7_A HPR kinase/phosphatase; 97.0 0.00025 8.5E-09 74.7 3.2 54 341-395 121-178 (314)
11 2qmh_A HPR kinase/phosphorylas 96.8 0.00033 1.1E-08 69.8 1.3 49 348-397 19-70 (205)
12 3tr0_A Guanylate kinase, GMP k 93.9 0.018 6E-07 54.1 1.6 20 363-382 6-25 (205)
13 1zp6_A Hypothetical protein AT 93.8 0.018 6.1E-07 53.6 1.4 21 362-382 7-27 (191)
14 4gp7_A Metallophosphoesterase; 93.7 0.016 5.6E-07 54.1 1.0 21 362-382 7-27 (171)
15 3uie_A Adenylyl-sulfate kinase 93.7 0.019 6.5E-07 54.6 1.4 22 361-382 22-43 (200)
16 1kgd_A CASK, peripheral plasma 93.6 0.022 7.6E-07 53.5 1.8 20 363-382 4-23 (180)
17 1znw_A Guanylate kinase, GMP k 93.5 0.024 8.4E-07 54.3 1.8 21 362-382 18-38 (207)
18 1qhx_A CPT, protein (chloramph 93.4 0.022 7.6E-07 52.3 1.4 19 364-382 3-21 (178)
19 2j41_A Guanylate kinase; GMP, 93.2 0.028 9.4E-07 52.7 1.6 21 362-382 4-24 (207)
20 3tau_A Guanylate kinase, GMP k 93.0 0.03 1E-06 53.9 1.6 21 362-382 6-26 (208)
21 2qor_A Guanylate kinase; phosp 93.0 0.024 8.4E-07 54.0 1.0 20 363-382 11-30 (204)
22 1kag_A SKI, shikimate kinase I 92.9 0.024 8.4E-07 51.8 0.8 19 364-382 4-22 (173)
23 1s96_A Guanylate kinase, GMP k 92.9 0.033 1.1E-06 54.9 1.8 21 362-382 14-34 (219)
24 3c8u_A Fructokinase; YP_612366 92.8 0.03 1E-06 53.7 1.3 21 362-382 20-40 (208)
25 1lvg_A Guanylate kinase, GMP k 92.8 0.027 9.3E-07 54.0 0.9 20 363-382 3-22 (198)
26 3a00_A Guanylate kinase, GMP k 92.7 0.028 9.7E-07 52.9 1.0 19 364-382 1-19 (186)
27 1z6g_A Guanylate kinase; struc 92.6 0.032 1.1E-06 54.4 1.2 21 362-382 21-41 (218)
28 4eun_A Thermoresistant glucoki 92.5 0.038 1.3E-06 52.5 1.5 21 362-382 27-47 (200)
29 3lnc_A Guanylate kinase, GMP k 92.5 0.036 1.2E-06 53.7 1.4 21 362-382 25-45 (231)
30 1knq_A Gluconate kinase; ALFA/ 92.4 0.035 1.2E-06 51.1 1.2 20 363-382 7-26 (175)
31 3asz_A Uridine kinase; cytidin 92.3 0.039 1.4E-06 52.3 1.3 21 362-382 4-24 (211)
32 3ec2_A DNA replication protein 92.2 0.034 1.2E-06 51.6 0.8 20 363-382 37-56 (180)
33 3tif_A Uncharacterized ABC tra 92.0 0.051 1.7E-06 54.0 1.9 22 361-382 28-49 (235)
34 3vaa_A Shikimate kinase, SK; s 92.0 0.047 1.6E-06 51.8 1.5 21 362-382 23-43 (199)
35 2pcj_A ABC transporter, lipopr 91.9 0.051 1.7E-06 53.6 1.6 21 362-382 28-48 (224)
36 2pez_A Bifunctional 3'-phospho 91.8 0.046 1.6E-06 50.7 1.2 21 362-382 3-23 (179)
37 2ehv_A Hypothetical protein PH 91.7 0.051 1.8E-06 52.2 1.5 21 362-382 28-48 (251)
38 2bdt_A BH3686; alpha-beta prot 91.7 0.038 1.3E-06 51.6 0.5 19 364-382 2-20 (189)
39 3kb2_A SPBC2 prophage-derived 91.7 0.05 1.7E-06 49.2 1.2 17 366-382 3-19 (173)
40 1htw_A HI0065; nucleotide-bind 91.7 0.054 1.8E-06 50.9 1.5 21 362-382 31-51 (158)
41 3lw7_A Adenylate kinase relate 91.6 0.049 1.7E-06 48.8 1.1 17 366-382 3-19 (179)
42 1kht_A Adenylate kinase; phosp 91.6 0.054 1.9E-06 49.9 1.4 19 364-382 3-21 (192)
43 4a74_A DNA repair and recombin 91.5 0.051 1.7E-06 51.5 1.2 21 362-382 23-43 (231)
44 2wwf_A Thymidilate kinase, put 91.5 0.068 2.3E-06 50.4 2.0 20 363-382 9-28 (212)
45 2qt1_A Nicotinamide riboside k 91.5 0.061 2.1E-06 51.0 1.7 38 361-398 18-60 (207)
46 2rhm_A Putative kinase; P-loop 91.5 0.058 2E-06 49.9 1.5 19 364-382 5-23 (193)
47 1b0u_A Histidine permease; ABC 91.4 0.065 2.2E-06 54.2 1.8 21 362-382 30-50 (262)
48 3ney_A 55 kDa erythrocyte memb 91.4 0.069 2.3E-06 52.4 2.0 21 362-382 17-37 (197)
49 3trf_A Shikimate kinase, SK; a 91.3 0.059 2E-06 49.9 1.4 19 364-382 5-23 (185)
50 2cbz_A Multidrug resistance-as 91.1 0.074 2.5E-06 52.9 1.9 21 362-382 29-49 (237)
51 3iij_A Coilin-interacting nucl 90.9 0.062 2.1E-06 49.7 1.1 20 363-382 10-29 (180)
52 3fvq_A Fe(3+) IONS import ATP- 90.9 0.08 2.7E-06 56.6 2.0 21 362-382 28-48 (359)
53 1ly1_A Polynucleotide kinase; 90.9 0.064 2.2E-06 48.9 1.1 17 366-382 4-20 (181)
54 1nks_A Adenylate kinase; therm 90.7 0.066 2.3E-06 49.2 1.0 17 366-382 3-19 (194)
55 2olj_A Amino acid ABC transpor 90.6 0.085 2.9E-06 53.6 1.8 21 362-382 48-68 (263)
56 2kjq_A DNAA-related protein; s 90.6 0.094 3.2E-06 48.4 2.0 20 363-382 35-54 (149)
57 1g6h_A High-affinity branched- 90.6 0.077 2.6E-06 53.4 1.5 21 362-382 31-51 (257)
58 3b85_A Phosphate starvation-in 90.5 0.09 3.1E-06 51.5 1.9 21 362-382 20-40 (208)
59 2ff7_A Alpha-hemolysin translo 90.5 0.078 2.7E-06 53.1 1.5 21 362-382 33-53 (247)
60 2pze_A Cystic fibrosis transme 90.5 0.079 2.7E-06 52.3 1.5 21 362-382 32-52 (229)
61 2cdn_A Adenylate kinase; phosp 90.5 0.089 3.1E-06 49.7 1.8 21 362-382 18-38 (201)
62 1ji0_A ABC transporter; ATP bi 90.5 0.08 2.7E-06 52.7 1.5 21 362-382 30-50 (240)
63 2d2e_A SUFC protein; ABC-ATPas 90.4 0.08 2.7E-06 53.0 1.5 21 362-382 27-47 (250)
64 1cke_A CK, MSSA, protein (cyti 90.4 0.079 2.7E-06 50.5 1.3 19 364-382 5-23 (227)
65 1mv5_A LMRA, multidrug resista 90.4 0.082 2.8E-06 52.6 1.5 21 362-382 26-46 (243)
66 2ixe_A Antigen peptide transpo 90.3 0.093 3.2E-06 53.4 1.9 21 362-382 43-63 (271)
67 3gfo_A Cobalt import ATP-bindi 90.3 0.084 2.9E-06 54.1 1.5 21 362-382 32-52 (275)
68 4g1u_C Hemin import ATP-bindin 90.3 0.083 2.8E-06 53.6 1.5 21 362-382 35-55 (266)
69 1vpl_A ABC transporter, ATP-bi 90.2 0.097 3.3E-06 52.9 1.8 21 362-382 39-59 (256)
70 2ghi_A Transport protein; mult 90.1 0.099 3.4E-06 52.8 1.9 21 362-382 44-64 (260)
71 2yz2_A Putative ABC transporte 90.1 0.099 3.4E-06 52.9 1.9 21 362-382 31-51 (266)
72 3rlf_A Maltose/maltodextrin im 90.1 0.096 3.3E-06 56.4 1.8 21 362-382 27-47 (381)
73 2yyz_A Sugar ABC transporter, 90.1 0.098 3.3E-06 55.8 1.9 21 362-382 27-47 (359)
74 2zu0_C Probable ATP-dependent 90.1 0.1 3.4E-06 52.9 1.8 21 362-382 44-64 (267)
75 2bwj_A Adenylate kinase 5; pho 90.0 0.05 1.7E-06 50.6 -0.4 20 363-382 11-30 (199)
76 1nn5_A Similar to deoxythymidy 90.0 0.11 3.6E-06 49.0 1.8 20 363-382 8-27 (215)
77 2it1_A 362AA long hypothetical 90.0 0.1 3.5E-06 55.7 1.8 21 362-382 27-47 (362)
78 3t61_A Gluconokinase; PSI-biol 89.9 0.078 2.7E-06 50.1 0.9 19 364-382 18-36 (202)
79 3cm0_A Adenylate kinase; ATP-b 89.9 0.073 2.5E-06 49.2 0.6 19 364-382 4-22 (186)
80 1v43_A Sugar-binding transport 89.9 0.1 3.5E-06 55.8 1.8 21 362-382 35-55 (372)
81 1sgw_A Putative ABC transporte 89.9 0.08 2.7E-06 52.2 0.9 21 362-382 33-53 (214)
82 1gvn_B Zeta; postsegregational 89.9 0.091 3.1E-06 53.6 1.3 20 363-382 32-51 (287)
83 2ihy_A ABC transporter, ATP-bi 89.7 0.099 3.4E-06 53.5 1.5 21 362-382 45-65 (279)
84 2vp4_A Deoxynucleoside kinase; 89.7 0.11 3.7E-06 50.8 1.6 22 361-382 17-38 (230)
85 2yvu_A Probable adenylyl-sulfa 89.7 0.099 3.4E-06 48.7 1.3 21 362-382 11-31 (186)
86 1z47_A CYSA, putative ABC-tran 89.6 0.1 3.4E-06 55.6 1.5 21 362-382 39-59 (355)
87 1rj9_A FTSY, signal recognitio 89.6 0.11 3.9E-06 53.7 1.8 20 363-382 101-120 (304)
88 2nq2_C Hypothetical ABC transp 89.5 0.1 3.6E-06 52.4 1.5 21 362-382 29-49 (253)
89 2plr_A DTMP kinase, probable t 89.5 0.098 3.3E-06 48.9 1.2 19 364-382 4-22 (213)
90 2jeo_A Uridine-cytidine kinase 89.5 0.099 3.4E-06 51.4 1.2 21 362-382 23-43 (245)
91 1g29_1 MALK, maltose transport 89.5 0.1 3.6E-06 55.7 1.5 21 362-382 27-47 (372)
92 2w0m_A SSO2452; RECA, SSPF, un 89.5 0.1 3.5E-06 49.2 1.2 21 362-382 21-41 (235)
93 3aez_A Pantothenate kinase; tr 89.4 0.1 3.4E-06 54.3 1.3 22 361-382 87-108 (312)
94 2qi9_C Vitamin B12 import ATP- 89.3 0.11 3.8E-06 52.3 1.5 21 362-382 24-44 (249)
95 2eyu_A Twitching motility prot 89.3 0.11 3.7E-06 52.6 1.4 21 362-382 23-43 (261)
96 2cvh_A DNA repair and recombin 89.3 0.12 4.2E-06 48.6 1.6 21 362-382 18-38 (220)
97 2v54_A DTMP kinase, thymidylat 89.3 0.12 4.2E-06 48.3 1.7 20 363-382 3-22 (204)
98 1rz3_A Hypothetical protein rb 89.2 0.11 3.8E-06 49.5 1.4 21 362-382 20-40 (201)
99 2bbw_A Adenylate kinase 4, AK4 89.2 0.12 4E-06 50.7 1.5 20 363-382 26-45 (246)
100 3d31_A Sulfate/molybdate ABC t 89.2 0.094 3.2E-06 55.6 0.9 21 362-382 24-44 (348)
101 2v9p_A Replication protein E1; 89.1 0.13 4.5E-06 53.6 1.9 21 362-382 124-144 (305)
102 1jbk_A CLPB protein; beta barr 89.1 0.13 4.4E-06 46.3 1.6 19 364-382 43-61 (195)
103 2c95_A Adenylate kinase 1; tra 89.1 0.14 4.6E-06 47.6 1.7 20 363-382 8-27 (196)
104 2vli_A Antibiotic resistance p 88.9 0.12 4E-06 47.5 1.2 19 364-382 5-23 (183)
105 2bbs_A Cystic fibrosis transme 88.9 0.14 4.9E-06 52.7 2.0 21 362-382 62-82 (290)
106 1y63_A LMAJ004144AAA protein; 88.9 0.13 4.5E-06 48.2 1.6 20 363-382 9-28 (184)
107 3bos_A Putative DNA replicatio 88.9 0.13 4.6E-06 48.5 1.6 20 363-382 51-70 (242)
108 2qz4_A Paraplegin; AAA+, SPG7, 88.9 0.25 8.6E-06 47.9 3.6 44 333-382 13-57 (262)
109 4e22_A Cytidylate kinase; P-lo 88.9 0.13 4.4E-06 51.1 1.6 21 362-382 25-45 (252)
110 1n0w_A DNA repair protein RAD5 88.9 0.12 4.1E-06 49.5 1.3 21 362-382 22-42 (243)
111 2i3b_A HCR-ntpase, human cance 88.8 0.11 3.7E-06 50.1 0.9 19 364-382 1-19 (189)
112 2jaq_A Deoxyguanosine kinase; 88.7 0.12 4.1E-06 48.0 1.1 17 366-382 2-18 (205)
113 1m7g_A Adenylylsulfate kinase; 88.6 0.13 4.3E-06 49.3 1.3 21 362-382 23-43 (211)
114 2pjz_A Hypothetical protein ST 88.6 0.14 4.9E-06 51.9 1.7 20 362-382 29-48 (263)
115 1oxx_K GLCV, glucose, ABC tran 88.6 0.09 3.1E-06 55.8 0.2 21 362-382 29-49 (353)
116 2p65_A Hypothetical protein PF 88.3 0.12 4.1E-06 46.7 0.9 19 364-382 43-61 (187)
117 1ye8_A Protein THEP1, hypothet 88.3 0.14 4.9E-06 48.6 1.4 17 366-382 2-18 (178)
118 2p5t_B PEZT; postsegregational 88.2 0.11 3.9E-06 51.4 0.6 21 362-382 30-50 (253)
119 3tui_C Methionine import ATP-b 88.2 0.16 5.5E-06 54.4 1.8 21 362-382 52-72 (366)
120 1ex7_A Guanylate kinase; subst 88.1 0.13 4.3E-06 49.9 0.9 18 365-382 2-19 (186)
121 2ze6_A Isopentenyl transferase 88.0 0.14 4.7E-06 51.1 1.1 17 366-382 3-19 (253)
122 1gtv_A TMK, thymidylate kinase 87.9 0.089 3E-06 49.6 -0.3 17 366-382 2-18 (214)
123 1tev_A UMP-CMP kinase; ploop, 87.9 0.14 4.8E-06 47.1 1.0 19 364-382 3-21 (196)
124 2z0h_A DTMP kinase, thymidylat 87.8 0.14 4.6E-06 47.6 0.9 17 366-382 2-18 (197)
125 3fb4_A Adenylate kinase; psych 87.8 0.14 4.6E-06 48.8 0.9 17 366-382 2-18 (216)
126 3gd7_A Fusion complex of cysti 87.8 0.18 6.3E-06 54.2 2.0 21 362-382 45-65 (390)
127 1ixz_A ATP-dependent metallopr 87.8 0.13 4.6E-06 50.2 0.9 16 367-382 52-67 (254)
128 1sq5_A Pantothenate kinase; P- 87.8 0.16 5.5E-06 52.1 1.5 21 362-382 78-98 (308)
129 3b9q_A Chloroplast SRP recepto 87.7 0.16 5.5E-06 52.5 1.5 46 333-382 71-118 (302)
130 1via_A Shikimate kinase; struc 87.6 0.14 4.8E-06 47.2 0.9 17 366-382 6-22 (175)
131 3nh6_A ATP-binding cassette SU 87.5 0.14 4.9E-06 53.3 0.9 22 361-382 77-98 (306)
132 3dl0_A Adenylate kinase; phosp 87.4 0.15 5.1E-06 48.6 0.9 17 366-382 2-18 (216)
133 3cf0_A Transitional endoplasmi 87.4 0.19 6.4E-06 51.1 1.7 21 362-382 47-67 (301)
134 1lv7_A FTSH; alpha/beta domain 87.3 0.15 5.1E-06 50.0 0.9 18 365-382 46-63 (257)
135 2pbr_A DTMP kinase, thymidylat 87.3 0.17 5.6E-06 46.7 1.1 17 366-382 2-18 (195)
136 2onk_A Molybdate/tungstate ABC 87.2 0.2 6.7E-06 50.1 1.7 20 362-382 23-42 (240)
137 3b9p_A CG5977-PA, isoform A; A 87.2 0.18 6.1E-06 50.3 1.3 20 363-382 53-72 (297)
138 2w58_A DNAI, primosome compone 87.1 0.19 6.4E-06 47.3 1.4 18 365-382 55-72 (202)
139 1e6c_A Shikimate kinase; phosp 87.1 0.16 5.3E-06 46.3 0.8 17 366-382 4-20 (173)
140 1nlf_A Regulatory protein REPA 87.1 0.19 6.3E-06 50.3 1.4 21 362-382 28-48 (279)
141 1jjv_A Dephospho-COA kinase; P 87.1 0.17 5.9E-06 47.8 1.1 17 366-382 4-20 (206)
142 1aky_A Adenylate kinase; ATP:A 87.0 0.2 6.7E-06 48.1 1.5 20 363-382 3-22 (220)
143 3syl_A Protein CBBX; photosynt 87.0 0.23 8E-06 49.5 2.1 21 362-382 65-85 (309)
144 1pui_A ENGB, probable GTP-bind 87.0 0.21 7.2E-06 46.7 1.7 21 362-382 24-44 (210)
145 3h4m_A Proteasome-activating n 86.8 0.21 7.1E-06 49.4 1.6 20 363-382 50-69 (285)
146 2dpy_A FLII, flagellum-specifi 86.8 0.22 7.6E-06 54.2 1.9 21 362-382 155-175 (438)
147 2pt5_A Shikimate kinase, SK; a 86.8 0.18 6.2E-06 45.7 1.1 17 366-382 2-18 (168)
148 1oix_A RAS-related protein RAB 86.7 0.26 8.8E-06 46.1 2.1 17 366-382 31-47 (191)
149 1ukz_A Uridylate kinase; trans 86.7 0.2 6.7E-06 47.2 1.3 19 364-382 15-33 (203)
150 1zak_A Adenylate kinase; ATP:A 86.5 0.2 6.7E-06 48.1 1.2 19 364-382 5-23 (222)
151 1zd8_A GTP:AMP phosphotransfer 86.4 0.22 7.6E-06 48.0 1.6 20 363-382 6-25 (227)
152 2dr3_A UPF0273 protein PH0284; 86.4 0.22 7.4E-06 47.7 1.4 21 362-382 21-41 (247)
153 3e70_C DPA, signal recognition 86.4 0.21 7.2E-06 52.4 1.4 21 362-382 127-147 (328)
154 2lkc_A Translation initiation 86.3 0.28 9.7E-06 44.1 2.1 24 359-382 3-26 (178)
155 3nwj_A ATSK2; P loop, shikimat 86.3 0.18 6.3E-06 50.8 0.9 19 364-382 48-66 (250)
156 2iyv_A Shikimate kinase, SK; t 86.2 0.19 6.4E-06 46.5 0.9 17 366-382 4-20 (184)
157 2if2_A Dephospho-COA kinase; a 86.1 0.22 7.5E-06 46.8 1.3 17 366-382 3-19 (204)
158 1uf9_A TT1252 protein; P-loop, 86.0 0.24 8E-06 46.2 1.4 20 363-382 7-26 (203)
159 1qf9_A UMP/CMP kinase, protein 86.0 0.23 7.8E-06 45.6 1.3 18 365-382 7-24 (194)
160 2obl_A ESCN; ATPase, hydrolase 85.8 0.27 9.1E-06 52.0 1.9 20 363-382 70-89 (347)
161 2gj8_A MNME, tRNA modification 85.8 0.24 8.3E-06 45.5 1.4 21 362-382 2-22 (172)
162 1iy2_A ATP-dependent metallopr 85.8 0.2 6.9E-06 49.9 0.9 16 367-382 76-91 (278)
163 2x8a_A Nuclear valosin-contain 85.7 0.21 7.3E-06 50.5 1.1 16 367-382 47-62 (274)
164 3n70_A Transport activator; si 85.7 0.22 7.6E-06 45.0 1.1 20 363-382 23-42 (145)
165 4eaq_A DTMP kinase, thymidylat 85.5 0.24 8.2E-06 48.8 1.3 20 363-382 25-44 (229)
166 3uk6_A RUVB-like 2; hexameric 85.5 0.26 8.8E-06 50.5 1.5 19 364-382 70-88 (368)
167 1in4_A RUVB, holliday junction 85.4 0.21 7.2E-06 51.6 0.8 18 365-382 52-69 (334)
168 2yhs_A FTSY, cell division pro 85.3 0.43 1.5E-05 53.3 3.3 45 333-382 266-311 (503)
169 2og2_A Putative signal recogni 85.2 0.26 8.8E-06 52.5 1.4 45 333-382 128-175 (359)
170 1cr0_A DNA primase/helicase; R 85.0 0.33 1.1E-05 48.8 2.0 21 362-382 33-53 (296)
171 3sop_A Neuronal-specific septi 84.9 0.28 9.7E-06 49.7 1.5 17 366-382 4-20 (270)
172 3co5_A Putative two-component 84.9 0.25 8.4E-06 44.7 0.9 19 364-382 27-45 (143)
173 3a4m_A L-seryl-tRNA(SEC) kinas 84.9 0.26 8.8E-06 49.1 1.2 19 364-382 4-22 (260)
174 1vht_A Dephospho-COA kinase; s 84.8 0.27 9.3E-06 46.9 1.3 19 364-382 4-22 (218)
175 3kta_A Chromosome segregation 84.8 0.32 1.1E-05 44.8 1.7 16 366-381 28-43 (182)
176 2gza_A Type IV secretion syste 84.8 0.23 7.9E-06 52.3 0.8 21 362-382 173-193 (361)
177 3tlx_A Adenylate kinase 2; str 84.8 0.28 9.4E-06 48.5 1.3 20 363-382 28-47 (243)
178 1njg_A DNA polymerase III subu 84.6 0.34 1.2E-05 44.9 1.8 18 365-382 46-63 (250)
179 1odf_A YGR205W, hypothetical 3 84.6 0.27 9.4E-06 50.5 1.2 20 363-382 30-49 (290)
180 1nrj_B SR-beta, signal recogni 84.6 0.35 1.2E-05 45.5 1.9 19 364-382 12-30 (218)
181 2chg_A Replication factor C sm 84.3 0.27 9.1E-06 45.3 0.9 17 366-382 40-56 (226)
182 2px0_A Flagellar biosynthesis 84.3 0.32 1.1E-05 50.1 1.6 21 362-382 103-123 (296)
183 1a7j_A Phosphoribulokinase; tr 84.3 0.33 1.1E-05 49.7 1.6 20 363-382 4-23 (290)
184 3cr8_A Sulfate adenylyltranfer 84.2 0.22 7.4E-06 56.0 0.3 21 362-382 367-387 (552)
185 1d2n_A N-ethylmaleimide-sensit 84.2 0.26 9E-06 48.7 0.9 18 365-382 65-82 (272)
186 1zuh_A Shikimate kinase; alpha 84.1 0.29 9.9E-06 44.7 1.1 18 365-382 8-25 (168)
187 1ltq_A Polynucleotide kinase; 83.9 0.3 1E-05 48.9 1.1 17 366-382 4-20 (301)
188 2qby_A CDC6 homolog 1, cell di 83.8 0.32 1.1E-05 49.3 1.3 21 362-382 43-63 (386)
189 3eie_A Vacuolar protein sortin 83.8 0.32 1.1E-05 49.8 1.4 19 364-382 51-69 (322)
190 1u0l_A Probable GTPase ENGC; p 83.7 0.35 1.2E-05 49.5 1.6 20 363-382 168-187 (301)
191 1e4v_A Adenylate kinase; trans 83.6 0.31 1.1E-05 46.6 1.1 17 366-382 2-18 (214)
192 1pzn_A RAD51, DNA repair and r 83.5 0.3 1E-05 51.4 1.0 21 362-382 129-149 (349)
193 3b60_A Lipid A export ATP-bind 83.5 0.39 1.3E-05 53.6 2.0 21 362-382 367-387 (582)
194 1l8q_A Chromosomal replication 83.5 0.29 9.8E-06 49.8 0.8 19 364-382 37-55 (324)
195 1vma_A Cell division protein F 83.5 0.3 1E-05 50.7 1.0 43 334-382 79-122 (306)
196 2yl4_A ATP-binding cassette SU 83.4 0.4 1.4E-05 53.7 2.1 22 361-382 367-388 (595)
197 2yv5_A YJEQ protein; hydrolase 83.4 0.37 1.3E-05 49.5 1.6 21 362-382 163-183 (302)
198 2f1r_A Molybdopterin-guanine d 83.3 0.22 7.7E-06 47.3 -0.0 18 365-382 3-20 (171)
199 1g8f_A Sulfate adenylyltransfe 83.2 0.25 8.6E-06 55.1 0.3 21 362-382 393-413 (511)
200 1ofh_A ATP-dependent HSL prote 83.2 0.3 1E-05 48.3 0.9 20 363-382 49-68 (310)
201 2ewv_A Twitching motility prot 83.2 0.36 1.2E-05 51.2 1.4 21 362-382 134-154 (372)
202 3lda_A DNA repair protein RAD5 83.1 0.36 1.2E-05 52.1 1.4 21 362-382 176-196 (400)
203 1xwi_A SKD1 protein; VPS4B, AA 83.1 0.35 1.2E-05 49.9 1.3 19 364-382 45-63 (322)
204 2xb4_A Adenylate kinase; ATP-b 83.0 0.32 1.1E-05 47.2 0.9 17 366-382 2-18 (223)
205 1p5z_B DCK, deoxycytidine kina 82.9 0.36 1.2E-05 47.8 1.3 23 361-383 21-43 (263)
206 3be4_A Adenylate kinase; malar 82.9 0.4 1.4E-05 46.0 1.6 19 364-382 5-23 (217)
207 2pt7_A CAG-ALFA; ATPase, prote 82.8 0.35 1.2E-05 50.5 1.2 21 362-382 169-189 (330)
208 1np6_A Molybdopterin-guanine d 82.8 0.4 1.4E-05 45.8 1.5 18 365-382 7-24 (174)
209 4a82_A Cystic fibrosis transme 82.7 0.42 1.4E-05 53.4 1.9 21 362-382 365-385 (578)
210 1ak2_A Adenylate kinase isoenz 82.6 0.43 1.5E-05 46.4 1.7 20 363-382 15-34 (233)
211 1svm_A Large T antigen; AAA+ f 82.6 0.41 1.4E-05 51.3 1.6 21 362-382 167-187 (377)
212 1lw7_A Transcriptional regulat 82.6 0.32 1.1E-05 50.9 0.8 61 538-606 301-362 (365)
213 4fcw_A Chaperone protein CLPB; 82.5 0.36 1.2E-05 48.2 1.1 18 365-382 48-65 (311)
214 3t15_A Ribulose bisphosphate c 82.5 0.39 1.3E-05 48.8 1.4 18 365-382 37-54 (293)
215 3hws_A ATP-dependent CLP prote 82.5 0.33 1.1E-05 50.4 0.8 20 363-382 50-69 (363)
216 2r62_A Cell division protease 82.5 0.17 5.8E-06 49.7 -1.3 17 366-382 46-62 (268)
217 2v1u_A Cell division control p 82.4 0.32 1.1E-05 49.4 0.7 20 363-382 43-62 (387)
218 3tqc_A Pantothenate kinase; bi 82.4 0.36 1.2E-05 50.6 1.1 18 365-382 93-110 (321)
219 3b5x_A Lipid A export ATP-bind 82.4 0.42 1.5E-05 53.3 1.7 21 362-382 367-387 (582)
220 1xjc_A MOBB protein homolog; s 82.3 0.4 1.4E-05 46.0 1.2 18 365-382 5-22 (169)
221 3r20_A Cytidylate kinase; stru 82.0 0.39 1.3E-05 48.2 1.1 19 364-382 9-27 (233)
222 3ux8_A Excinuclease ABC, A sub 81.9 0.42 1.4E-05 54.2 1.5 20 362-381 42-61 (670)
223 1uj2_A Uridine-cytidine kinase 81.9 0.4 1.4E-05 47.3 1.1 18 365-382 23-40 (252)
224 2zej_A Dardarin, leucine-rich 81.9 0.43 1.5E-05 43.9 1.3 17 366-382 4-20 (184)
225 2ce2_X GTPase HRAS; signaling 81.8 0.48 1.6E-05 41.4 1.5 17 366-382 5-21 (166)
226 3jvv_A Twitching mobility prot 81.8 0.43 1.5E-05 50.6 1.4 19 364-382 123-141 (356)
227 2f9l_A RAB11B, member RAS onco 81.8 0.44 1.5E-05 44.5 1.3 17 366-382 7-23 (199)
228 2rcn_A Probable GTPase ENGC; Y 81.8 0.48 1.6E-05 50.6 1.8 20 363-382 214-233 (358)
229 3qf4_B Uncharacterized ABC tra 81.8 0.51 1.8E-05 53.0 2.1 22 361-382 378-399 (598)
230 3ake_A Cytidylate kinase; CMP 81.8 0.41 1.4E-05 44.7 1.1 17 366-382 4-20 (208)
231 3ux8_A Excinuclease ABC, A sub 81.7 0.44 1.5E-05 54.1 1.5 21 362-382 346-366 (670)
232 3ld9_A DTMP kinase, thymidylat 81.6 0.44 1.5E-05 47.5 1.3 22 361-382 18-39 (223)
233 1yqt_A RNAse L inhibitor; ATP- 81.5 0.5 1.7E-05 52.7 1.9 21 362-382 45-65 (538)
234 2npi_A Protein CLP1; CLP1-PCF1 81.4 0.45 1.5E-05 52.2 1.5 21 362-382 136-156 (460)
235 1tf7_A KAIC; homohexamer, hexa 81.4 0.48 1.6E-05 52.2 1.7 21 362-382 37-57 (525)
236 1sxj_C Activator 1 40 kDa subu 81.4 0.39 1.3E-05 49.3 0.9 16 367-382 49-64 (340)
237 1fnn_A CDC6P, cell division co 81.4 0.54 1.9E-05 47.9 2.0 17 366-382 46-62 (389)
238 3zvl_A Bifunctional polynucleo 81.3 0.48 1.6E-05 50.8 1.6 20 363-382 257-276 (416)
239 3m6a_A ATP-dependent protease 81.0 0.47 1.6E-05 52.8 1.4 20 363-382 107-126 (543)
240 2qby_B CDC6 homolog 3, cell di 80.9 0.57 1.9E-05 47.9 1.9 19 364-382 45-63 (384)
241 2wji_A Ferrous iron transport 80.9 0.5 1.7E-05 42.7 1.4 17 366-382 5-21 (165)
242 3pfi_A Holliday junction ATP-d 80.5 0.44 1.5E-05 48.4 0.9 18 365-382 56-73 (338)
243 1t9h_A YLOQ, probable GTPase E 80.5 0.29 9.9E-06 51.1 -0.5 21 362-382 171-191 (307)
244 3j16_B RLI1P; ribosome recycli 80.3 0.58 2E-05 53.1 1.9 21 362-382 101-121 (608)
245 2qgz_A Helicase loader, putati 80.3 0.53 1.8E-05 48.5 1.4 19 364-382 152-170 (308)
246 1kao_A RAP2A; GTP-binding prot 80.2 0.55 1.9E-05 41.2 1.4 17 366-382 5-21 (167)
247 3d8b_A Fidgetin-like protein 1 80.1 0.61 2.1E-05 48.7 1.8 21 362-382 115-135 (357)
248 3umf_A Adenylate kinase; rossm 80.1 0.54 1.9E-05 46.6 1.4 21 362-382 27-47 (217)
249 3qf4_A ABC transporter, ATP-bi 80.1 0.59 2E-05 52.4 1.8 21 362-382 367-387 (587)
250 2ocp_A DGK, deoxyguanosine kin 80.0 0.54 1.8E-05 45.8 1.3 19 364-382 2-20 (241)
251 2f6r_A COA synthase, bifunctio 80.0 0.52 1.8E-05 47.7 1.3 18 365-382 76-93 (281)
252 1nij_A Hypothetical protein YJ 80.0 0.58 2E-05 48.2 1.6 17 366-382 6-22 (318)
253 1z2a_A RAS-related protein RAB 79.9 0.57 2E-05 41.4 1.4 17 366-382 7-23 (168)
254 2dyk_A GTP-binding protein; GT 79.9 0.58 2E-05 41.1 1.4 17 366-382 3-19 (161)
255 2qag_B Septin-6, protein NEDD5 79.9 0.62 2.1E-05 50.9 1.8 21 362-382 38-60 (427)
256 1sxj_E Activator 1 40 kDa subu 79.8 0.51 1.7E-05 48.0 1.1 31 528-558 182-212 (354)
257 1q3t_A Cytidylate kinase; nucl 79.8 0.62 2.1E-05 45.3 1.7 20 363-382 15-34 (236)
258 1u8z_A RAS-related protein RAL 79.8 0.58 2E-05 41.1 1.4 17 366-382 6-22 (168)
259 3ozx_A RNAse L inhibitor; ATP 79.7 0.56 1.9E-05 52.4 1.5 21 362-382 292-312 (538)
260 1ek0_A Protein (GTP-binding pr 79.7 0.59 2E-05 41.2 1.4 17 366-382 5-21 (170)
261 2wjg_A FEOB, ferrous iron tran 79.7 0.59 2E-05 42.6 1.4 18 365-382 8-25 (188)
262 2c9o_A RUVB-like 1; hexameric 79.6 0.56 1.9E-05 50.7 1.4 19 364-382 63-81 (456)
263 2zts_A Putative uncharacterize 79.5 0.56 1.9E-05 44.8 1.2 26 540-565 156-181 (251)
264 3q72_A GTP-binding protein RAD 79.5 0.64 2.2E-05 41.2 1.5 17 366-382 4-20 (166)
265 2bjv_A PSP operon transcriptio 79.4 0.5 1.7E-05 46.5 0.9 19 364-382 29-47 (265)
266 1ky3_A GTP-binding protein YPT 79.3 0.61 2.1E-05 41.8 1.4 17 366-382 10-26 (182)
267 2ged_A SR-beta, signal recogni 79.3 0.61 2.1E-05 42.8 1.4 19 364-382 48-66 (193)
268 3v9p_A DTMP kinase, thymidylat 79.2 0.59 2E-05 46.5 1.4 20 363-382 24-43 (227)
269 1c1y_A RAS-related protein RAP 79.2 0.62 2.1E-05 41.1 1.4 17 366-382 5-21 (167)
270 1m8p_A Sulfate adenylyltransfe 79.2 0.58 2E-05 52.7 1.4 22 361-382 393-414 (573)
271 1g16_A RAS-related protein SEC 79.2 0.66 2.3E-05 41.0 1.5 17 366-382 5-21 (170)
272 4tmk_A Protein (thymidylate ki 79.1 0.67 2.3E-05 45.5 1.7 20 363-382 2-21 (213)
273 1zu4_A FTSY; GTPase, signal re 79.1 0.52 1.8E-05 49.1 1.0 21 362-382 103-123 (320)
274 1um8_A ATP-dependent CLP prote 79.1 0.51 1.8E-05 49.1 0.9 19 364-382 72-90 (376)
275 3q85_A GTP-binding protein REM 79.0 0.63 2.2E-05 41.3 1.4 17 366-382 4-20 (169)
276 4edh_A DTMP kinase, thymidylat 79.0 0.58 2E-05 45.9 1.2 20 363-382 5-24 (213)
277 4b4t_M 26S protease regulatory 79.0 0.56 1.9E-05 51.3 1.2 18 365-382 216-233 (434)
278 1g8p_A Magnesium-chelatase 38 78.9 0.46 1.6E-05 48.0 0.5 16 367-382 48-63 (350)
279 1hqc_A RUVB; extended AAA-ATPa 78.9 0.5 1.7E-05 47.4 0.7 19 364-382 38-56 (324)
280 1z08_A RAS-related protein RAB 78.8 0.64 2.2E-05 41.2 1.3 17 366-382 8-24 (170)
281 2fn4_A P23, RAS-related protei 78.7 0.69 2.4E-05 41.4 1.5 18 365-382 10-27 (181)
282 3a8t_A Adenylate isopentenyltr 78.7 0.61 2.1E-05 49.6 1.3 21 363-383 39-59 (339)
283 2nzj_A GTP-binding protein REM 78.6 0.66 2.3E-05 41.4 1.4 17 366-382 6-22 (175)
284 3lv8_A DTMP kinase, thymidylat 78.6 0.71 2.4E-05 46.2 1.7 20 363-382 26-45 (236)
285 3ozx_A RNAse L inhibitor; ATP 78.6 0.63 2.2E-05 52.0 1.5 23 360-382 21-43 (538)
286 2qp9_X Vacuolar protein sortin 78.4 0.55 1.9E-05 49.1 0.9 18 365-382 85-102 (355)
287 3bk7_A ABC transporter ATP-bin 78.4 0.72 2.5E-05 52.3 1.9 22 361-382 114-135 (607)
288 3pqc_A Probable GTP-binding pr 78.3 0.72 2.4E-05 41.9 1.5 18 365-382 24-41 (195)
289 3tmk_A Thymidylate kinase; pho 78.2 0.77 2.6E-05 45.4 1.8 20 363-382 4-23 (216)
290 1r8s_A ADP-ribosylation factor 78.2 0.7 2.4E-05 40.8 1.4 17 366-382 2-18 (164)
291 2erx_A GTP-binding protein DI- 78.0 0.71 2.4E-05 40.8 1.4 17 366-382 5-21 (172)
292 1wms_A RAB-9, RAB9, RAS-relate 77.9 0.71 2.4E-05 41.3 1.4 17 366-382 9-25 (177)
293 1p9r_A General secretion pathw 77.8 0.69 2.4E-05 50.1 1.4 20 363-382 166-185 (418)
294 3kkq_A RAS-related protein M-R 77.7 0.87 3E-05 41.2 1.9 17 366-382 20-36 (183)
295 1r2q_A RAS-related protein RAB 77.7 0.74 2.5E-05 40.6 1.4 17 366-382 8-24 (170)
296 2y8e_A RAB-protein 6, GH09086P 77.6 0.78 2.7E-05 40.9 1.5 17 366-382 16-32 (179)
297 1sxj_D Activator 1 41 kDa subu 77.5 0.62 2.1E-05 47.1 0.9 16 367-382 61-76 (353)
298 1upt_A ARL1, ADP-ribosylation 77.5 0.75 2.6E-05 40.8 1.4 19 364-382 7-25 (171)
299 4b4t_L 26S protease subunit RP 77.4 0.67 2.3E-05 50.7 1.2 18 365-382 216-233 (437)
300 2vf7_A UVRA2, excinuclease ABC 77.3 0.69 2.3E-05 54.6 1.3 22 362-383 34-55 (842)
301 3vfd_A Spastin; ATPase, microt 77.3 0.71 2.4E-05 48.5 1.4 20 363-382 147-166 (389)
302 2grj_A Dephospho-COA kinase; T 77.2 0.69 2.4E-05 44.6 1.1 18 365-382 13-30 (192)
303 3bc1_A RAS-related protein RAB 77.2 0.77 2.6E-05 41.5 1.4 17 366-382 13-29 (195)
304 4b4t_K 26S protease regulatory 77.2 0.67 2.3E-05 50.6 1.1 18 365-382 207-224 (428)
305 3pvs_A Replication-associated 77.1 0.68 2.3E-05 50.4 1.1 18 365-382 51-68 (447)
306 1z0j_A RAB-22, RAS-related pro 77.0 0.79 2.7E-05 40.5 1.4 17 366-382 8-24 (170)
307 3j16_B RLI1P; ribosome recycli 76.8 0.83 2.8E-05 51.9 1.8 21 362-382 376-396 (608)
308 3con_A GTPase NRAS; structural 76.8 0.79 2.7E-05 41.9 1.4 17 366-382 23-39 (190)
309 2zr9_A Protein RECA, recombina 76.8 0.77 2.6E-05 48.4 1.4 21 362-382 59-79 (349)
310 3tw8_B RAS-related protein RAB 76.8 0.79 2.7E-05 41.0 1.3 17 366-382 11-27 (181)
311 1x6v_B Bifunctional 3'-phospho 76.8 0.75 2.6E-05 52.6 1.4 20 363-382 51-70 (630)
312 2zan_A Vacuolar protein sortin 76.7 0.77 2.6E-05 49.6 1.4 19 364-382 167-185 (444)
313 1yqt_A RNAse L inhibitor; ATP- 76.7 0.77 2.6E-05 51.1 1.5 21 362-382 310-330 (538)
314 3exa_A TRNA delta(2)-isopenten 76.6 0.72 2.5E-05 48.8 1.1 20 364-383 3-22 (322)
315 3pih_A Uvrabc system protein A 76.6 0.81 2.8E-05 54.5 1.7 22 362-383 22-43 (916)
316 2z43_A DNA repair and recombin 76.6 0.79 2.7E-05 47.2 1.4 21 362-382 105-125 (324)
317 3k1j_A LON protease, ATP-depen 76.5 0.67 2.3E-05 52.0 0.9 19 364-382 60-78 (604)
318 2cxx_A Probable GTP-binding pr 76.5 0.86 3E-05 41.3 1.5 17 366-382 3-19 (190)
319 2r44_A Uncharacterized protein 76.5 0.49 1.7E-05 48.1 -0.2 19 364-382 46-64 (331)
320 2a9k_A RAS-related protein RAL 76.4 0.83 2.8E-05 41.0 1.4 18 365-382 19-36 (187)
321 4dsu_A GTPase KRAS, isoform 2B 76.4 0.83 2.9E-05 41.2 1.4 17 366-382 6-22 (189)
322 2oap_1 GSPE-2, type II secreti 76.4 0.77 2.6E-05 51.0 1.3 20 363-382 259-278 (511)
323 1moz_A ARL1, ADP-ribosylation 76.3 0.86 2.9E-05 41.1 1.4 20 363-382 17-36 (183)
324 3sr0_A Adenylate kinase; phosp 76.3 0.76 2.6E-05 44.9 1.1 17 366-382 2-18 (206)
325 3ihw_A Centg3; RAS, centaurin, 76.3 0.83 2.8E-05 42.3 1.3 17 366-382 22-38 (184)
326 2ygr_A Uvrabc system protein A 76.3 0.81 2.8E-05 54.9 1.5 22 362-383 44-65 (993)
327 3hr8_A Protein RECA; alpha and 76.1 0.73 2.5E-05 49.0 1.0 20 363-382 60-79 (356)
328 1tf7_A KAIC; homohexamer, hexa 76.1 0.85 2.9E-05 50.2 1.6 21 362-382 279-299 (525)
329 1svi_A GTP-binding protein YSX 76.0 0.9 3.1E-05 41.6 1.5 19 364-382 23-41 (195)
330 2r6f_A Excinuclease ABC subuni 76.0 0.84 2.9E-05 54.6 1.6 22 362-383 42-63 (972)
331 2g6b_A RAS-related protein RAB 75.9 0.88 3E-05 40.8 1.4 17 366-382 12-28 (180)
332 2bov_A RAla, RAS-related prote 75.8 0.87 3E-05 41.9 1.4 17 366-382 16-32 (206)
333 1v5w_A DMC1, meiotic recombina 75.8 0.78 2.7E-05 47.8 1.1 21 362-382 120-140 (343)
334 4b4t_J 26S protease regulatory 75.8 0.71 2.4E-05 50.2 0.8 18 365-382 183-200 (405)
335 2fu5_C RAS-related protein RAB 75.7 0.99 3.4E-05 40.8 1.7 17 366-382 10-26 (183)
336 2hxs_A RAB-26, RAS-related pro 75.7 0.89 3E-05 40.7 1.4 17 366-382 8-24 (178)
337 1mh1_A RAC1; GTP-binding, GTPa 75.7 0.9 3.1E-05 40.9 1.4 17 366-382 7-23 (186)
338 3crm_A TRNA delta(2)-isopenten 75.7 0.78 2.7E-05 48.3 1.1 18 365-382 6-23 (323)
339 3bk7_A ABC transporter ATP-bin 75.5 0.86 2.9E-05 51.7 1.5 21 362-382 380-400 (607)
340 2efe_B Small GTP-binding prote 75.5 0.9 3.1E-05 40.8 1.3 17 366-382 14-30 (181)
341 3t5g_A GTP-binding protein RHE 75.5 0.96 3.3E-05 40.8 1.5 17 366-382 8-24 (181)
342 1z0f_A RAB14, member RAS oncog 75.4 0.92 3.1E-05 40.4 1.4 17 366-382 17-33 (179)
343 1sky_E F1-ATPase, F1-ATP synth 75.3 0.95 3.3E-05 50.1 1.7 24 573-596 424-447 (473)
344 1fzq_A ADP-ribosylation factor 75.3 0.98 3.3E-05 41.5 1.5 19 364-382 16-34 (181)
345 2bme_A RAB4A, RAS-related prot 75.3 0.98 3.4E-05 40.9 1.5 17 366-382 12-28 (186)
346 2qm8_A GTPase/ATPase; G protei 75.1 0.91 3.1E-05 47.4 1.5 21 362-382 53-73 (337)
347 2z4s_A Chromosomal replication 75.1 0.77 2.6E-05 49.6 0.9 19 364-382 130-148 (440)
348 2oil_A CATX-8, RAS-related pro 75.0 0.93 3.2E-05 41.6 1.3 17 366-382 27-43 (193)
349 3t1o_A Gliding protein MGLA; G 74.8 0.97 3.3E-05 41.0 1.4 16 366-381 16-31 (198)
350 4bas_A ADP-ribosylation factor 74.6 0.98 3.3E-05 41.4 1.3 18 365-382 18-35 (199)
351 3d3q_A TRNA delta(2)-isopenten 74.6 0.87 3E-05 48.3 1.1 18 365-382 8-25 (340)
352 2axn_A 6-phosphofructo-2-kinas 74.5 1.3 4.3E-05 49.3 2.4 18 365-382 36-53 (520)
353 2qnr_A Septin-2, protein NEDD5 74.5 0.93 3.2E-05 46.5 1.3 17 366-382 20-36 (301)
354 3bwd_D RAC-like GTP-binding pr 74.4 1 3.5E-05 40.5 1.4 18 365-382 9-26 (182)
355 2i1q_A DNA repair and recombin 74.4 0.87 3E-05 46.5 1.0 21 362-382 96-116 (322)
356 1f6b_A SAR1; gtpases, N-termin 74.3 0.98 3.3E-05 42.3 1.3 18 365-382 26-43 (198)
357 1ypw_A Transitional endoplasmi 74.3 0.85 2.9E-05 53.2 1.0 21 362-382 236-256 (806)
358 1iqp_A RFCS; clamp loader, ext 74.2 0.84 2.9E-05 45.4 0.8 17 366-382 48-64 (327)
359 3cbq_A GTP-binding protein REM 74.0 1 3.5E-05 42.1 1.4 17 366-382 25-41 (195)
360 3tkl_A RAS-related protein RAB 73.9 1.1 3.6E-05 41.0 1.4 17 366-382 18-34 (196)
361 1z06_A RAS-related protein RAB 73.9 1 3.6E-05 41.2 1.4 18 365-382 21-38 (189)
362 2h57_A ADP-ribosylation factor 73.9 1.1 3.8E-05 41.1 1.5 18 365-382 22-39 (190)
363 3lxx_A GTPase IMAP family memb 73.8 1 3.5E-05 43.6 1.4 17 366-382 31-47 (239)
364 2chq_A Replication factor C sm 73.8 0.87 3E-05 45.1 0.8 16 367-382 41-56 (319)
365 1m7b_A RND3/RHOE small GTP-bin 73.8 1.1 3.8E-05 40.9 1.5 17 366-382 9-25 (184)
366 3dz8_A RAS-related protein RAB 73.7 1.1 3.9E-05 41.2 1.5 17 366-382 25-41 (191)
367 3clv_A RAB5 protein, putative; 73.6 1.1 3.7E-05 40.6 1.4 17 366-382 9-25 (208)
368 3euj_A Chromosome partition pr 73.5 1.1 3.6E-05 49.8 1.5 18 365-382 30-47 (483)
369 3l0i_B RAS-related protein RAB 73.2 1.3 4.6E-05 41.0 1.9 17 366-382 35-51 (199)
370 3foz_A TRNA delta(2)-isopenten 73.1 1 3.6E-05 47.4 1.3 20 364-383 10-29 (316)
371 3llm_A ATP-dependent RNA helic 73.1 1.2 4.1E-05 43.2 1.7 20 362-381 74-93 (235)
372 3c5c_A RAS-like protein 12; GD 73.1 1.1 3.8E-05 41.3 1.4 17 366-382 23-39 (187)
373 2gf0_A GTP-binding protein DI- 73.0 1.2 4.1E-05 40.7 1.5 18 365-382 9-26 (199)
374 1ksh_A ARF-like protein 2; sma 72.8 1.2 4E-05 40.6 1.4 20 363-382 17-36 (186)
375 2gf9_A RAS-related protein RAB 72.8 1.2 4E-05 40.9 1.4 17 366-382 24-40 (189)
376 2hf9_A Probable hydrogenase ni 72.8 1.2 4.1E-05 42.1 1.5 18 365-382 39-56 (226)
377 4b4t_I 26S protease regulatory 72.7 1 3.5E-05 49.4 1.2 18 365-382 217-234 (437)
378 2wsm_A Hydrogenase expression/ 72.5 1.2 4.2E-05 41.9 1.5 18 365-382 31-48 (221)
379 1jr3_A DNA polymerase III subu 72.5 1.3 4.4E-05 45.1 1.7 18 365-382 39-56 (373)
380 3kl4_A SRP54, signal recogniti 72.4 0.84 2.9E-05 49.9 0.4 20 363-382 96-115 (433)
381 2fh5_B SR-beta, signal recogni 72.4 1.2 4.1E-05 41.7 1.4 18 365-382 8-25 (214)
382 3llu_A RAS-related GTP-binding 72.4 1.3 4.3E-05 41.2 1.5 17 365-381 21-37 (196)
383 2h17_A ADP-ribosylation factor 72.3 1.2 4E-05 40.7 1.3 18 365-382 22-39 (181)
384 1zj6_A ADP-ribosylation factor 72.3 1.3 4.4E-05 40.6 1.5 19 364-382 16-34 (187)
385 1m2o_B GTP-binding protein SAR 72.2 1.3 4.4E-05 41.1 1.5 20 363-382 22-41 (190)
386 1tq4_A IIGP1, interferon-induc 72.2 1.3 4.4E-05 48.0 1.8 18 365-382 70-87 (413)
387 2fg5_A RAB-22B, RAS-related pr 72.2 1.3 4.4E-05 40.9 1.5 17 366-382 25-41 (192)
388 4b4t_H 26S protease regulatory 72.1 0.93 3.2E-05 50.2 0.6 19 364-382 243-261 (467)
389 1ls1_A Signal recognition part 72.1 0.98 3.4E-05 46.3 0.8 20 363-382 97-116 (295)
390 1zbd_A Rabphilin-3A; G protein 72.1 1.2 4.2E-05 41.1 1.4 17 366-382 10-26 (203)
391 2dhr_A FTSH; AAA+ protein, hex 72.0 1 3.4E-05 50.0 0.9 16 367-382 67-82 (499)
392 2a5j_A RAS-related protein RAB 71.9 1.2 4.2E-05 40.9 1.3 17 366-382 23-39 (191)
393 3oes_A GTPase rhebl1; small GT 71.9 1.3 4.5E-05 41.2 1.5 18 365-382 25-42 (201)
394 2iwr_A Centaurin gamma 1; ANK 71.8 1 3.4E-05 40.6 0.7 17 366-382 9-25 (178)
395 1vg8_A RAS-related protein RAB 71.7 1.3 4.3E-05 41.0 1.4 17 366-382 10-26 (207)
396 3te6_A Regulatory protein SIR3 71.7 1.1 3.7E-05 47.0 1.0 22 361-382 42-63 (318)
397 3reg_A RHO-like small GTPase; 71.7 1.3 4.4E-05 40.8 1.4 17 366-382 25-41 (194)
398 2bcg_Y Protein YP2, GTP-bindin 71.7 1.3 4.6E-05 41.1 1.5 17 366-382 10-26 (206)
399 1sxj_B Activator 1 37 kDa subu 71.6 1.1 3.7E-05 44.5 0.9 16 367-382 45-60 (323)
400 3hu3_A Transitional endoplasmi 71.6 1.3 4.5E-05 48.8 1.7 19 364-382 238-256 (489)
401 2il1_A RAB12; G-protein, GDP, 71.5 1.3 4.4E-05 41.0 1.4 17 366-382 28-44 (192)
402 3ice_A Transcription terminati 71.5 1.3 4.5E-05 48.4 1.6 20 363-382 173-192 (422)
403 2atv_A RERG, RAS-like estrogen 71.5 1.3 4.4E-05 40.9 1.4 18 365-382 29-46 (196)
404 2ce7_A Cell division protein F 71.4 1.1 3.6E-05 49.6 0.9 17 366-382 51-67 (476)
405 2vhj_A Ntpase P4, P4; non- hyd 71.4 1.1 3.7E-05 47.6 0.9 20 363-382 122-141 (331)
406 1x3s_A RAS-related protein RAB 71.4 1.3 4.5E-05 40.2 1.4 17 366-382 17-33 (195)
407 1ojl_A Transcriptional regulat 71.3 1.1 3.8E-05 45.8 1.0 19 364-382 25-43 (304)
408 2yc2_C IFT27, small RAB-relate 71.3 1 3.5E-05 41.4 0.6 17 366-382 22-38 (208)
409 2o52_A RAS-related protein RAB 71.3 1.4 4.7E-05 41.2 1.5 17 366-382 27-43 (200)
410 2ew1_A RAS-related protein RAB 71.1 1.4 4.7E-05 41.7 1.5 17 366-382 28-44 (201)
411 1sxj_A Activator 1 95 kDa subu 71.0 1.4 4.8E-05 48.3 1.7 19 364-382 77-95 (516)
412 3io5_A Recombination and repai 70.9 1.2 4.1E-05 47.3 1.1 20 362-382 27-46 (333)
413 2fv8_A H6, RHO-related GTP-bin 70.9 1.4 4.8E-05 41.2 1.5 17 366-382 27-43 (207)
414 2q3h_A RAS homolog gene family 70.9 1.4 4.6E-05 40.8 1.4 18 365-382 21-38 (201)
415 4gzl_A RAS-related C3 botulinu 70.8 1.4 4.9E-05 41.3 1.5 18 364-381 30-47 (204)
416 3cph_A RAS-related protein SEC 70.3 1.4 4.9E-05 40.8 1.4 18 365-382 21-38 (213)
417 3k53_A Ferrous iron transport 70.3 1.5 5E-05 43.7 1.5 17 366-382 5-21 (271)
418 2p5s_A RAS and EF-hand domain 70.3 1.4 4.8E-05 40.9 1.3 18 365-382 29-46 (199)
419 1zd9_A ADP-ribosylation factor 70.2 1.4 4.9E-05 40.4 1.4 18 365-382 23-40 (188)
420 3gj0_A GTP-binding nuclear pro 70.1 1.5 5.2E-05 41.4 1.5 17 366-382 17-33 (221)
421 2qu8_A Putative nucleolar GTP- 70.1 1.4 4.9E-05 42.0 1.4 19 364-382 29-47 (228)
422 2x77_A ADP-ribosylation factor 70.0 1.4 4.9E-05 40.2 1.3 20 363-382 21-40 (189)
423 4djt_A GTP-binding nuclear pro 70.0 1.4 4.9E-05 41.2 1.4 17 366-382 13-29 (218)
424 2atx_A Small GTP binding prote 69.9 1.5 5.3E-05 40.1 1.5 17 366-382 20-36 (194)
425 1tue_A Replication protein E1; 69.9 1.2 4E-05 44.6 0.7 19 364-382 58-76 (212)
426 2f7s_A C25KG, RAS-related prot 69.9 1.4 4.9E-05 41.2 1.3 17 366-382 27-43 (217)
427 3nbx_X ATPase RAVA; AAA+ ATPas 69.8 1.4 4.7E-05 48.9 1.4 19 364-382 41-59 (500)
428 2ffh_A Protein (FFH); SRP54, s 69.8 2.6 9E-05 45.8 3.5 44 333-382 73-116 (425)
429 4aby_A DNA repair protein RECN 69.7 0.83 2.8E-05 47.9 -0.4 19 362-381 59-77 (415)
430 2b6h_A ADP-ribosylation factor 69.7 1.6 5.4E-05 40.6 1.5 20 363-382 28-47 (192)
431 3eph_A TRNA isopentenyltransfe 69.6 1.4 4.7E-05 48.0 1.3 17 366-382 4-20 (409)
432 2qen_A Walker-type ATPase; unk 69.5 1.6 5.5E-05 43.5 1.7 18 365-382 32-49 (350)
433 1bif_A 6-phosphofructo-2-kinas 69.4 1.3 4.6E-05 47.9 1.1 19 364-382 39-57 (469)
434 2j1l_A RHO-related GTP-binding 69.4 1.6 5.5E-05 41.3 1.5 17 366-382 36-52 (214)
435 3bh0_A DNAB-like replicative h 69.3 1.6 5.4E-05 44.9 1.6 21 362-382 66-86 (315)
436 4f4c_A Multidrug resistance pr 69.0 1.7 5.7E-05 53.5 2.0 22 361-382 441-462 (1321)
437 4f4c_A Multidrug resistance pr 69.0 1.8 6.2E-05 53.2 2.3 21 362-382 1103-1123(1321)
438 1w1w_A Structural maintenance 68.9 1.6 5.6E-05 46.5 1.7 19 363-381 25-43 (430)
439 2j0v_A RAC-like GTP-binding pr 68.9 1.7 5.7E-05 40.6 1.5 18 365-382 10-27 (212)
440 2iw3_A Elongation factor 3A; a 68.6 1.5 5.2E-05 52.6 1.5 21 362-382 459-479 (986)
441 2xtp_A GTPase IMAP family memb 68.5 1.7 5.7E-05 42.5 1.5 18 365-382 23-40 (260)
442 2gco_A H9, RHO-related GTP-bin 68.5 1.7 5.9E-05 40.5 1.5 17 366-382 27-43 (201)
443 3pxg_A Negative regulator of g 68.4 1.6 5.6E-05 47.3 1.6 18 365-382 202-219 (468)
444 2h92_A Cytidylate kinase; ross 68.4 1.4 4.7E-05 41.8 0.8 18 365-382 4-21 (219)
445 1gwn_A RHO-related GTP-binding 68.3 1.7 5.9E-05 41.1 1.5 18 365-382 29-46 (205)
446 1u94_A RECA protein, recombina 68.1 1.6 5.3E-05 46.3 1.3 20 363-382 62-81 (356)
447 2gks_A Bifunctional SAT/APS ki 68.0 1.5 5E-05 49.1 1.1 21 362-382 370-390 (546)
448 3t5d_A Septin-7; GTP-binding p 68.0 1.7 5.9E-05 43.3 1.5 17 366-382 10-26 (274)
449 4dhe_A Probable GTP-binding pr 67.7 1 3.6E-05 42.2 -0.1 19 364-382 29-47 (223)
450 1j8m_F SRP54, signal recogniti 67.6 1.5 5.2E-05 45.1 1.0 19 364-382 98-116 (297)
451 2qag_C Septin-7; cell cycle, c 67.6 1.7 5.6E-05 47.2 1.4 17 366-382 33-49 (418)
452 3g5u_A MCG1178, multidrug resi 67.4 1.8 6.3E-05 53.0 1.8 22 361-382 413-434 (1284)
453 2hup_A RAS-related protein RAB 67.2 1.9 6.4E-05 40.4 1.5 17 366-382 31-47 (201)
454 1f2t_A RAD50 ABC-ATPase; DNA d 67.2 1.8 6.2E-05 39.7 1.4 17 365-381 24-40 (149)
455 2cjw_A GTP-binding protein GEM 66.8 1.8 6.3E-05 40.3 1.4 17 366-382 8-24 (192)
456 2fna_A Conserved hypothetical 66.4 1.9 6.7E-05 42.9 1.5 18 365-382 31-48 (357)
457 3q3j_B RHO-related GTP-binding 66.1 1.9 6.6E-05 40.9 1.4 17 366-382 29-45 (214)
458 1g41_A Heat shock protein HSLU 66.1 1.6 5.5E-05 47.9 0.9 18 365-382 51-68 (444)
459 3qf7_A RAD50; ABC-ATPase, ATPa 66.1 1.8 6.1E-05 45.6 1.2 19 362-381 22-40 (365)
460 2vf7_A UVRA2, excinuclease ABC 66.0 1.9 6.5E-05 50.9 1.5 21 362-382 521-541 (842)
461 2orw_A Thymidine kinase; TMTK, 65.2 2.4 8.1E-05 40.3 1.8 19 364-382 3-21 (184)
462 3dm5_A SRP54, signal recogniti 65.0 1.7 5.8E-05 47.7 0.8 20 363-382 99-118 (443)
463 3lxw_A GTPase IMAP family memb 65.0 2 6.9E-05 42.3 1.3 17 366-382 23-39 (247)
464 2v3c_C SRP54, signal recogniti 64.9 1.8 6.3E-05 47.0 1.1 20 364-383 99-118 (432)
465 1e69_A Chromosome segregation 64.8 2.4 8.1E-05 43.5 1.9 18 363-381 24-41 (322)
466 3th5_A RAS-related C3 botulinu 68.4 1.4 4.7E-05 41.1 0.0 18 365-382 31-48 (204)
467 2ga8_A Hypothetical 39.9 kDa p 64.6 1.9 6.5E-05 46.2 1.1 17 366-382 26-42 (359)
468 3g5u_A MCG1178, multidrug resi 64.2 2.2 7.7E-05 52.3 1.8 21 362-382 1057-1077(1284)
469 2r6a_A DNAB helicase, replicat 64.1 2.3 7.7E-05 45.9 1.6 21 362-382 201-221 (454)
470 3cpj_B GTP-binding protein YPT 63.9 2.2 7.6E-05 40.5 1.3 17 366-382 15-31 (223)
471 3pih_A Uvrabc system protein A 63.7 2.2 7.4E-05 50.9 1.5 20 362-381 608-627 (916)
472 3cf2_A TER ATPase, transitiona 63.6 2.1 7.1E-05 50.4 1.2 18 365-382 239-256 (806)
473 2www_A Methylmalonic aciduria 63.0 2.4 8.1E-05 44.4 1.5 21 362-382 72-92 (349)
474 1wb9_A DNA mismatch repair pro 63.0 2.5 8.6E-05 49.5 1.8 21 362-382 605-625 (800)
475 3u61_B DNA polymerase accessor 62.7 2.2 7.7E-05 42.9 1.2 18 365-382 49-66 (324)
476 1h65_A Chloroplast outer envel 62.6 2.5 8.7E-05 41.9 1.5 18 365-382 40-57 (270)
477 3pxi_A Negative regulator of g 62.6 2.1 7.2E-05 49.1 1.1 17 366-382 523-539 (758)
478 2iw3_A Elongation factor 3A; a 62.6 1.5 5.2E-05 52.6 -0.1 21 362-382 697-717 (986)
479 3def_A T7I23.11 protein; chlor 62.3 2.6 8.9E-05 41.7 1.5 18 365-382 37-54 (262)
480 1xp8_A RECA protein, recombina 62.1 2.5 8.5E-05 45.0 1.4 21 362-382 72-92 (366)
481 2xxa_A Signal recognition part 62.1 2.2 7.4E-05 46.4 1.0 20 364-383 100-119 (433)
482 3iby_A Ferrous iron transport 61.5 2.8 9.7E-05 41.8 1.6 17 366-382 3-19 (256)
483 3hjn_A DTMP kinase, thymidylat 61.4 2.3 7.8E-05 40.9 0.9 16 367-382 3-18 (197)
484 3qks_A DNA double-strand break 61.2 2.7 9.2E-05 40.4 1.4 17 365-381 24-40 (203)
485 1w5s_A Origin recognition comp 61.1 1.9 6.6E-05 44.3 0.4 20 363-382 49-70 (412)
486 2q6t_A DNAB replication FORK h 61.1 2.9 0.0001 44.9 1.8 22 362-383 198-219 (444)
487 2o5v_A DNA replication and rep 61.0 2.5 8.6E-05 44.8 1.2 19 362-381 25-43 (359)
488 3pxi_A Negative regulator of g 60.9 2.7 9.3E-05 48.2 1.6 18 365-382 202-219 (758)
489 3i8s_A Ferrous iron transport 60.5 2.9 9.9E-05 41.9 1.5 17 366-382 5-21 (274)
490 3b1v_A Ferrous iron uptake tra 60.2 2.8 9.6E-05 42.4 1.4 18 365-382 4-21 (272)
491 1qhl_A Protein (cell division 60.1 0.88 3E-05 45.4 -2.4 17 366-382 29-45 (227)
492 2g3y_A GTP-binding protein GEM 60.1 2.9 9.8E-05 40.4 1.4 17 366-382 39-55 (211)
493 2ygr_A Uvrabc system protein A 59.9 2.8 9.5E-05 50.4 1.5 21 362-382 666-686 (993)
494 4hlc_A DTMP kinase, thymidylat 59.9 2.6 8.8E-05 40.9 1.0 18 365-382 3-20 (205)
495 4ag6_A VIRB4 ATPase, type IV s 59.8 2.7 9.3E-05 44.0 1.2 19 364-382 35-53 (392)
496 1ni3_A YCHF GTPase, YCHF GTP-b 59.7 3.4 0.00012 44.4 2.0 21 362-382 18-38 (392)
497 4b3f_X DNA-binding protein smu 59.5 2.7 9.4E-05 47.3 1.3 19 364-382 205-223 (646)
498 1ewq_A DNA mismatch repair pro 59.1 3 0.0001 48.7 1.5 19 364-382 576-594 (765)
499 2b8t_A Thymidine kinase; deoxy 58.8 2.8 9.5E-05 41.7 1.0 21 362-382 10-30 (223)
500 3a1s_A Iron(II) transport prot 57.6 3.3 0.00011 41.3 1.4 17 366-382 7-23 (258)
No 1
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Probab=100.00 E-value=3.2e-160 Score=1322.24 Aligned_cols=514 Identities=47% Similarity=0.818 Sum_probs=504.7
Q ss_pred CcEEEcCCHHHHHHHHHhcCCCeEEecCCceEeeCCCcccCCcCCeeeecCCCcccccccCCCCCCCcCCHHHHHHHHHH
Q 005865 151 THVLYNLSPAELYEQAVKYEKGSFITSSGALATLSGAKTGRSPRDKRVVKDETTERELWWGKGSPNIEMDEHTFLVNRER 230 (673)
Q Consensus 151 ~~v~~Nls~~eL~e~Al~~~eg~~lt~~GaL~~~tG~~TGRspkDk~IV~~~~~~~~v~wg~~~~n~~~~~~~f~~l~~~ 230 (673)
.+|+||++++||||+|+++++|++++++|+|+++||++|||||+|||||+++.++++||||+ +|++++++.|+.|+++
T Consensus 2 ~~v~~n~~~~eL~e~A~~~~eg~~lt~~Gal~~~tg~~tgRsp~dk~iv~~~~~~~~i~w~~--~n~~~~~e~f~~l~~~ 79 (524)
T 1ii2_A 2 PTIHRNLLSPELVQWALKIEKDSRLTARGALAVMSYAKTGRSPLDKRIVDTDDVRENVDWGK--VNMKLSEESFARVRKI 79 (524)
T ss_dssp CEEEESCCHHHHHHHHHHHCTTCEECTTSCEEECCTTCSSBCGGGEEEECCHHHHTTSCBTT--TBCEECHHHHHHHHHH
T ss_pred CeeEeCCCHHHHHHHHHHhCCCcEEcCCCCEEEecCcccCCCcCceEEeCCCCCccccccCc--CcccCCHHHHHHHHHH
Confidence 57999999999999999999998899999999999999999999999999999999999998 8999999999999999
Q ss_pred HHHHHccCCcEEEEEeeecCCCCCceEEEEEcchhhHHHHhhccccCCChhhhccCCCCCEEEEEcCCCCCCcccCCCCc
Q 005865 231 AVDYLNSLDKVFVNDQFLNWDPEHRIKVRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHYMTS 310 (673)
Q Consensus 231 ~~~yl~~~~~lyV~D~~vG~d~~~~i~vrvit~~a~~aLf~~NLf~rp~~~e~~~fg~pd~tI~~ap~f~~~~~~~G~~s 310 (673)
+++||+++++|||+|+++|+|++|+++||+||+++||+||++|||+||.++|+++||+|||+||++|+|.++++.+|++|
T Consensus 80 ~~~~l~~k~~l~v~d~~~G~d~~~~~~vrvit~~a~~~lf~~nl~~rp~~~e~~~fg~pd~~i~~~p~f~~~~~~~G~~s 159 (524)
T 1ii2_A 80 AKEFLDTREHLFVVDCFAGHDERYRLKVRVFTTRPYHALFMRDMLIVPTPEELATFGEPDYVIYNAGECKADPSIPGLTS 159 (524)
T ss_dssp HHHHHHTSSEEEEEEEEECSSTTTCEEEEEEESSHHHHHHHHHHSBCCCHHHHHTCCSCSEEEEEETTSCCCTTSTTCCS
T ss_pred HHHHHcCCCcEEEEeeeeecChhhcccEEEEECHHHHHHHHHHhhccCCHHHhcccCCCCEEEEeCCCccCCcccCCcCc
Confidence 99999998669999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCCeEEEEccccchhhhHHHHHHHHHhcccCceeecccccccCCCCCEEEEEecCCCCccccccccCCceee
Q 005865 311 STSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVALFFGLSGTGKTTLSTDHNRYLIG 390 (673)
Q Consensus 311 ~~~i~id~~~~~~~I~Gt~Y~GEmKK~iltl~n~~l~~~G~LpmH~sanvg~~G~~alfFGLSGTGKTTLSadp~r~lIg 390 (673)
+++|++|+++++++|+||+|+|||||++||+|||+++++|+||||||+|++++|++++|||||||||||||+||+|.|||
T Consensus 160 ~~~v~~~~~~~~~~I~Gt~Y~GemKK~~ftl~n~~~~~~g~L~~H~san~g~~g~~~~ffGlSGtGKTTLs~d~~r~lIg 239 (524)
T 1ii2_A 160 TTCVALNFKTREQVILGTEYAGEMKKGILTVMFELMPQMNHLCMHASANVGKQGDVTVFFGLSGTGKTTLSADPHRNLIG 239 (524)
T ss_dssp SCEEEEETTTTEEEEESCCCTHHHHHHHHHHHHHHHHHTTCEEESEEEEECTTCCEEEEECCTTSSHHHHHCCTTSEEEE
T ss_pred ccEEEEECCCCeEEEECCcchHHHHHHHHHHHHHHHHHCCcEeecceeeeCCCCCEEEEEccCCcchhhhhhccCCeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcceecCCCceecCCcEEEEecCCCCCCchhHHhhccccceEEeeEEcCCCCeeccCCCcccccceEEEecccccCCCC
Q 005865 391 DDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYIPNAKI 470 (673)
Q Consensus 391 DDe~~w~d~Gvfn~EgGcyaK~~dLs~e~EP~I~~ai~~gailENV~ld~~~~~vdf~d~s~TeNtR~~yPi~~i~N~~~ 470 (673)
||||+|+++||||+|+|||+||+||+++.||+||+||+|++|+|||+||++++.|||+|+++|+|+|++||+++|+|++.
T Consensus 240 DDe~~w~~~Gvfn~E~G~y~K~idl~~e~eP~I~~ai~~~~ilENV~~d~~g~~vd~~d~s~t~NtR~~~P~~~i~n~~~ 319 (524)
T 1ii2_A 240 DDEHVWTDRGVFNIEGGCYAKAIGLNPKTEKDIYDAVRFGAVAENCVLDKRTGEIDFYDESICKNTRVAYPLSHIEGALS 319 (524)
T ss_dssp SSCEEECSSCEEESCSEEEEECTTCCTTTCHHHHHTCSTTCEEESCCBCTTTCSBCTTCCSSCSCCEEEEEGGGSTTCCS
T ss_pred cchhhccCCCccccccceEEEecCCCcccChhHHHhcCcCceEEEEEECCCCCcccCCCCcccCCceEEEEHHHCCCCCC
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred CCCCCCCceEEEEeecCCCCCCCccccCHHHHHHHHHhcccccccccccc-ccCcccccccccCCCCccCChHHHHHHHH
Q 005865 471 PCVGPHPKNIILLACDAFGVLPPVSKLSLEQTMYHFISGYTALVAGTEEG-VKEPRATFSACFGAAFIMLHPTKYAAMLA 549 (673)
Q Consensus 471 ~~~~~~P~~iIflt~DafgvlPPIskLt~eQA~~~FlsGyTAk~aGTE~G-v~eP~atFs~cFg~PF~p~~p~~yae~L~ 549 (673)
+++++||++||||+||+||+||||+|||++||||||+||||||+||||+| ++||+||||+|||+||+|+||.+||++|+
T Consensus 320 ~~~~g~P~~Iifl~~Da~gvlPPVskLt~eqa~y~F~sG~Tak~agtE~G~~~ep~~~fs~~fg~PF~~~~~~~ya~~L~ 399 (524)
T 1ii2_A 320 KAIAGHPKNVIFLTNDAFGVMPPVARLTSAQAMFWFVMGYTANVPGVEAGGTRTARPIFSSCFGGPFLVRHATFYGEQLA 399 (524)
T ss_dssp SCEECCEEEEEEEECCTTSCSCSEEEECHHHHHHHHHHCEEEECSSSBTTCCSSCEEEECGGGCGGGCCSCHHHHHHHHH
T ss_pred cccCCCCceEEEEEcCCcCCCCCcEecCHHHHHHHHhcCccccccccccCccccCceeeccccCCCccCCCHHHHHHHHH
Confidence 99899999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHcCCeEEEEccCCCCCcCCC-CCccCHHHHHHHHHHHhcCcccCccceecCCCCccccccCCCCCCCccCcccccC
Q 005865 550 EKMQKHGATGWLVNTGWSGGSYGS-GNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWS 628 (673)
Q Consensus 550 ekl~~~~v~v~LvNTGw~GG~yg~-G~Ri~l~~Tr~li~ail~G~l~~~~~~~~p~fgl~vP~~~~gvp~~~L~P~~~w~ 628 (673)
++|++++++||||||||+||+||+ |+|||+++||+||++|++|+|++++|+.+|+|||+||++|||||+++||||++|.
T Consensus 400 ~~i~~~~~~vylvNTg~~Gg~yg~~g~r~~~~~tra~i~ai~~G~l~~~~~~~~~~fg~~vP~~~~gv~~~~l~p~~~w~ 479 (524)
T 1ii2_A 400 EKMQKHNSRVWLLNTGYAGGRADRGAKRMPLRVTRAIIDAIHDGTLDRTEYEEYPGWGLHIPKYVAKVPEHLLNPRKAWK 479 (524)
T ss_dssp HHHHHHTCEEEEEECSEESSCGGGTCEECCHHHHHHHHHHHHSSSGGGSCEEEETTTTEEEESCCTTSCHHHHSHHHHCS
T ss_pred HHHHHhCCeEEEEeCCccccccCccCccCCHHHHHHHHHHHHcCCccCCceeECCccCccCCccCCCCChhhcChhhccC
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHh-hccCCCCCCCCcchHHHHhcCCCC
Q 005865 629 DMKAYKDTLLKLGTLFKKNFE-GFVNHKIGEDNKLTDEILAAGPLF 673 (673)
Q Consensus 629 d~~~Y~~~a~~La~~F~~nf~-kf~~~~~~~~~~~~~~i~~a~p~~ 673 (673)
|+++|+++|++|+++|++||+ ||.+. ++++|++|||+.
T Consensus 480 d~~~y~~~a~~L~~~F~~nf~~~f~~~-------~~~~~~~~~p~~ 518 (524)
T 1ii2_A 480 DVRQFNETSKELVAMFQESFSARFAAK-------ASQEMKSAVPRY 518 (524)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTGGG-------CCHHHHHTSCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhccc-------CCHHHHhcCCcc
Confidence 999999999999999999999 99874 889999999974
No 2
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Probab=100.00 E-value=1.6e-157 Score=1298.90 Aligned_cols=512 Identities=46% Similarity=0.788 Sum_probs=496.3
Q ss_pred hhhcCCCC-CcEEEcCCHHHHHHHHHhcC-----CCeEEecCCceEeeCCCcccCCcCCeeeecCCCcccccccCC----
Q 005865 143 ISDSALKF-THVLYNLSPAELYEQAVKYE-----KGSFITSSGALATLSGAKTGRSPRDKRVVKDETTERELWWGK---- 212 (673)
Q Consensus 143 l~~~gl~~-~~v~~Nls~~eL~e~Al~~~-----eg~~lt~~GaL~~~tG~~TGRspkDk~IV~~~~~~~~v~wg~---- 212 (673)
|+.+||.. .+|+||+++++|+|+|++++ +| .++++|+|+++||++|||||+|||||+++.++++||||+
T Consensus 12 ~~~~gi~~~~~v~~n~~~~~L~e~al~~~~~~~eeg-~l~~~Gal~~~tg~~tgRsp~dk~Iv~~~~~~~~i~w~~~~~~ 90 (540)
T 2olr_A 12 LEAYGISDVHDIVYNPSYDLLYQEELDPSLTGYERG-VLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDTFWWADKGKG 90 (540)
T ss_dssp HHHTTCCCCCCEEESCCHHHHHHHHHCTTCCGGGCE-EECTTSCEEECCCSCSSCCGGGEEEECSTTTTTTSCCTTSSSS
T ss_pred hhhcCCCCCCeEEeCCCHHHHHHHHHhcCCCccccc-eecCCCCEEEcCCCcccCCCCceEEeCCCCCcccccccccccc
Confidence 89999996 88999999999999999988 55 799999999999999999999999999999999999986
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHHccCCcEEEEEeeecCCCCCceEEEEEcchhhHHHHhhccccCCChhhhccCCCCCEE
Q 005865 213 GSPNIEMDEHTFLVNRERAVDYLNSLDKVFVNDQFLNWDPEHRIKVRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFT 292 (673)
Q Consensus 213 ~~~n~~~~~~~f~~l~~~~~~yl~~~~~lyV~D~~vG~d~~~~i~vrvit~~a~~aLf~~NLf~rp~~~e~~~fg~pd~t 292 (673)
-++|+++++++|+.|++++++||++++ |||+|+++|+|++|+++||+||+++||+||++|||+||..+|+++| +|||+
T Consensus 91 ~~~N~~~~~e~f~~l~~~~~~~l~~k~-lyv~d~~~G~d~~~~~~vr~ite~a~~alf~~nLf~rp~~ee~~~~-~pd~~ 168 (540)
T 2olr_A 91 KNDNKPLSPETWQHLKGLVTRQLSGKR-LFVVDAFCGANPDTRLSVRFITEVAWQAHFVKNMFIRPSDEELAGF-KPDFI 168 (540)
T ss_dssp CCSCEEECHHHHHHHHHHHHHHHTTSC-EEEEEEEESSSTTTCEEEEEEESCHHHHHHHHHHSBCCCHHHHHTC-CCSEE
T ss_pred ccccCCCCHHHHHHHHHHHHHHHcCCC-EEEEeeeeeCChhhceeEEEEeCHHHHHHHHHHhhcCCChHHhcCC-CCCEE
Confidence 147999999999999999999999975 9999999999999999999999999999999999999999999999 99999
Q ss_pred EEEc-----CCCCCCcccCCCCcceEEEEecCCCeEEEEccccchhhhHHHHHHHHHhcccCceeecccccccCCCCCEE
Q 005865 293 IYNA-----GQFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVA 367 (673)
Q Consensus 293 I~~a-----p~f~~~~~~~G~~s~~~i~id~~~~~~~I~Gt~Y~GEmKK~iltl~n~~l~~~G~LpmH~sanvg~~G~~a 367 (673)
||++ |+|.++ |++++++|++|+++++++|+||+|+|||||++||+|||+++++|+||||||+|++++|+++
T Consensus 169 i~~~~~~~~p~f~~~----G~~s~~~v~~~~~~~~~~I~Gt~Y~GemKK~~ftl~n~~l~~~G~L~mH~sanvg~~g~~~ 244 (540)
T 2olr_A 169 VMNGAKCTNPQWKEQ----GLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEKGDVA 244 (540)
T ss_dssp EEEETTCCCTTTTTT----TCSSSCEEEEETTTTEEEEESCCCTHHHHHHHHHHHHHHTGGGTCEEECEEEEECTTSCEE
T ss_pred EEEeccCCCCCcccC----CccCccEEEEEccCCeEEEeCCcCchHhhhhHHHHhHHHHHHCCcEeecceeeeCCCCCEE
Confidence 9999 999886 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCccccccccCCceeecCcceecCCCceecCCcEEEEecCCCCCCchhHHhhccccceEEeeEEcCCCCeecc
Q 005865 368 LFFGLSGTGKTTLSTDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDY 447 (673)
Q Consensus 368 lfFGLSGTGKTTLSadp~r~lIgDDe~~w~d~Gvfn~EgGcyaK~~dLs~e~EP~I~~ai~~gailENV~ld~~~~~vdf 447 (673)
+|||||||||||||+||+|.|||||||+|+++||||+|+|||+|||||+++.||+||+||+|++|+|||++|++++. ||
T Consensus 245 lffGlSGtGKTTLs~d~~r~lIgDDe~~w~~~Gvfn~EgGcyak~i~Ls~e~EP~i~~ai~~~aileNV~~d~~g~~-df 323 (540)
T 2olr_A 245 VFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPEIYNAIRRDALLENVTVREDGTI-DF 323 (540)
T ss_dssp EEECSTTSSHHHHHCCTTSEEEESSCEEEETTEEEESCSEEEEECTTCCTTTSHHHHHTCSTTCEEESCEECTTSCE-ET
T ss_pred EEEccCCCCHHHHhcCcCCcEEecCceeecCCCcccccCceEEEeccCCcccChhHHHhcCccceeeeeeEcCCCCe-ec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997655 99
Q ss_pred CCCcccccceEEEecccccCCCCC-CCCCCCceEEEEeecCCCCCCCccccCHHHHHHHHHhccccccccccccccCccc
Q 005865 448 LDKSVTENTRAAYPIEYIPNAKIP-CVGPHPKNIILLACDAFGVLPPVSKLSLEQTMYHFISGYTALVAGTEEGVKEPRA 526 (673)
Q Consensus 448 ~d~s~TeNtR~~yPi~~i~N~~~~-~~~~~P~~iIflt~DafgvlPPIskLt~eQA~~~FlsGyTAk~aGTE~Gv~eP~a 526 (673)
+|.++|+|||++||+++|+|++.+ +.++||++||||+||+||+||||+|||++||||||+||||||+||||+||+||+|
T Consensus 324 ~d~s~t~NtR~~yPi~~i~n~~~~~~~~g~P~~IifLt~Da~gvlPPVskLt~eqA~y~FlsG~tak~aGtE~Gv~ep~~ 403 (540)
T 2olr_A 324 DDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLPPVSRLTADQTQYHFLSGFTAKLAGTERGITEPTP 403 (540)
T ss_dssp TCCSSCSCCEEEEEGGGSSSBCCSSSEESCEEEEEEEECCTTSCSCSEEECCHHHHHHHHHHCEEEEETTGGGTCCCEEE
T ss_pred CCCCccccceEEEEHHHCCCcCCccccCCCCCEEEEEecCCcCCCCCceeCCHHHHHHHHHhcchhhhhccccCccccCC
Confidence 999999999999999999999888 7889999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCccCChHHHHHHHHHHHHHcCCeEEEEccCCCCCcCCCCCccCHHHHHHHHHHHhcCcccCccceecCCCC
Q 005865 527 TFSACFGAAFIMLHPTKYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFG 606 (673)
Q Consensus 527 tFs~cFg~PF~p~~p~~yae~L~ekl~~~~v~v~LvNTGw~GG~yg~G~Ri~l~~Tr~li~ail~G~l~~~~~~~~p~fg 606 (673)
|||+|||+||+|+||.+||++|+++|++|+++||||||||+|| |+|||+++||+||++|++|+|++++|+.+|+||
T Consensus 404 tfs~cFa~PF~p~~p~~ya~~l~~~~~~~~v~vylvNTGw~Gg----gkri~~~~traii~ai~~g~l~~~~~~~~~~f~ 479 (540)
T 2olr_A 404 TFSACFGAAFLSLHPTQYAEVLVKRMQAAGAQAYLVNTGWNGT----GKRISIKDTRAIIDAILNGSLDNAETFTLPMFN 479 (540)
T ss_dssp EECGGGCGGGCSSCHHHHHHHHHHHHHHHTCEEEEEECSBCTT----SSBCCHHHHHHHHHHHHHTHHHHSCEEEETTTT
T ss_pred cccccccCcccCCCHHHHHHHHHHHHHhcCCeEEEEeCCCcCC----CccCCHHHHHHHHHHHhcCCcCCCCceeCCCcC
Confidence 9999999999999999999999999999999999999999986 999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCccCcccccCChHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcchHHHH-hcCCCC
Q 005865 607 LEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEIL-AAGPLF 673 (673)
Q Consensus 607 l~vP~~~~gvp~~~L~P~~~w~d~~~Y~~~a~~La~~F~~nf~kf~~~~~~~~~~~~~~i~-~a~p~~ 673 (673)
|+||++|||||+++||||++|.|+++|+++|++||++|++||+||.+. ++++|+ ++||++
T Consensus 480 ~~vP~~~~gv~~~~l~p~~~w~d~~~y~~~~~~L~~~f~~nf~~~~~~-------~~~~~~~~~~p~~ 540 (540)
T 2olr_A 480 LAIPTELPGVDTKILDPRNTYASPEQWQEKAETLAKLFIDNFDKYTDT-------PAGAALVAAGPKL 540 (540)
T ss_dssp EEEESCCTTSCGGGGSGGGGSSSHHHHHHHHHHHHHHHHHHHGGGTTS-------HHHHHHGGGSCCC
T ss_pred cccCccCCCCChHhcCHhhhcCCHHHHHHHHHHHHHHHHHHHHhcccc-------CCHHHHhhcCCCC
Confidence 999999999999999999999999999999999999999999999874 778888 999974
No 3
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A
Probab=100.00 E-value=6.2e-156 Score=1288.95 Aligned_cols=512 Identities=46% Similarity=0.773 Sum_probs=487.6
Q ss_pred hhhcCCCC-CcEEEcCCHHHHHHHHHh---cC--CCeEEecCCceEeeCCCcccCCcCCeeeecCCCccccccc-----C
Q 005865 143 ISDSALKF-THVLYNLSPAELYEQAVK---YE--KGSFITSSGALATLSGAKTGRSPRDKRVVKDETTERELWW-----G 211 (673)
Q Consensus 143 l~~~gl~~-~~v~~Nls~~eL~e~Al~---~~--eg~~lt~~GaL~~~tG~~TGRspkDk~IV~~~~~~~~v~w-----g 211 (673)
|+.+||.. .+|+||++++||||+|++ ++ +| .++++|+|+++||++|||||+|||||+++.+++ ||| |
T Consensus 7 ~~~~g~~~~~~i~~n~~~~~L~e~a~~~~~~~~~eg-~l~~~Gal~~~tg~~tgRsp~dk~iv~~~~~~~-i~w~~~~~~ 84 (532)
T 1ytm_A 7 LAKYGITGATNIVHNPSHEELFAAETQASLEGFEKG-TVTEMGAVNVMTGVYTGRSPKDKFIVKNEASKE-IWWTSDEFK 84 (532)
T ss_dssp HHHHTCCCCSEEEESCCHHHHHHHHTCTTCCGGGCE-EECTTSSEEECCTTCCSBCGGGEEEECSGGGTT-SCCCCSSSC
T ss_pred hHhcCCCCCCeEEECCCHHHHHHHHHhhccCCcccc-eecCCCCEEEcCCCcccCCCCceEEeCCCCccc-ccccccccC
Confidence 88999996 889999999999999999 87 55 799999999999999999999999999999999 999 7
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHHccCCcEEEEEeeecCCCCCceEEEEEcchhhHHHHhhccccCCChhhhccCCCCCE
Q 005865 212 KGSPNIEMDEHTFLVNRERAVDYLNSLDKVFVNDQFLNWDPEHRIKVRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDF 291 (673)
Q Consensus 212 ~~~~n~~~~~~~f~~l~~~~~~yl~~~~~lyV~D~~vG~d~~~~i~vrvit~~a~~aLf~~NLf~rp~~~e~~~fg~pd~ 291 (673)
+ +|+++++++|+.|++++++||+++ +|||+|+++|+|++|+++||+||+++||+||++|||+||..+|+++| +|||
T Consensus 85 ~--~n~~~~~e~f~~l~~~~~~~l~~k-~l~v~d~~~G~d~~~~~~vr~it~~a~~~lf~~nLf~rp~~ee~~~f-~pd~ 160 (532)
T 1ytm_A 85 N--DNKPVTEEAWAQLKALAGKELSNK-PLYVVDLFCGANENTRLKIRFVMEVAWQAHFVTNMFIRPTEEELKGF-EPDF 160 (532)
T ss_dssp C--SCEEECHHHHHHHHHHHHHHHSSS-EEEEEEEEESSCTTTCEEEEEEESCHHHHHHHHHHSBCCCHHHHTTC-CCSE
T ss_pred c--ccCCCCHHHHHHHHHHHHHHHcCC-CEEEEEEEeeCChhhceeEEEEeCHHHHHHHHHHhccCCChHHhccC-CCCE
Confidence 7 899999999999999999999997 59999999999999999999999999999999999999999999999 9999
Q ss_pred EEEEcCC-CCCCcccCCCCcceEEEEecCCCeEEEEccccchhhhHHHHHHHHHhcccCceeecccccccCCCC-CEEEE
Q 005865 292 TIYNAGQ-FPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDG-DVALF 369 (673)
Q Consensus 292 tI~~ap~-f~~~~~~~G~~s~~~i~id~~~~~~~I~Gt~Y~GEmKK~iltl~n~~l~~~G~LpmH~sanvg~~G-~~alf 369 (673)
+||++|+ |.++++.+|++|+++|++|+++++++|+||+|+|||||++||+|||+++++|+||||||||++++| ++++|
T Consensus 161 ~i~~~p~~f~~~~~~~G~~s~~~v~~n~~~~~~~I~gt~Y~GemKK~~ftl~n~~~~~~G~L~~H~sanv~~~g~~~~~f 240 (532)
T 1ytm_A 161 VVLNASKAKVENFKELGLNSETAVVFNLAEKMQIILNTWYGGEMKKGMFSMMNFYLPLQGIAAMHCSANTDLEGKNTAIF 240 (532)
T ss_dssp EEEEETTCCCTTTTTTTCSSSCEEEEETTTTEEEEESCCCTTHHHHHHHHHHHHHTGGGTCEEEEEEEEEETTSCSEEEE
T ss_pred EEEECCccccCCcccCCCCCceEEEEECCCCEEEEeCCccCchhhHhHHHHHHHHHHHCCcEeecCeeeeCCCCCeEEEE
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999888 99999
Q ss_pred EecCCCCccccccccCCceeecCcceecCCCceecCCcEEEEecCCCCCCchhHHhhccccceEEeeEEcCCCCeeccCC
Q 005865 370 FGLSGTGKTTLSTDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLD 449 (673)
Q Consensus 370 FGLSGTGKTTLSadp~r~lIgDDe~~w~d~Gvfn~EgGcyaK~~dLs~e~EP~I~~ai~~gailENV~ld~~~~~vdf~d 449 (673)
||||||||||||+||+|.|||||||+|+++||||+|+|||+|||||+++.||+||++|+|++|+|||+||+++ +|||+|
T Consensus 241 fGlSGtGKTTLs~d~~r~lIgDDe~~w~~~Gvfn~EgGcyak~i~Ls~~~EP~i~~ai~~~ailENV~~d~~g-~vd~~d 319 (532)
T 1ytm_A 241 FGLSGTGKTTLSTDPKRLLIGDDEHGWDDDGVFNFEGGCYAKVINLSKENEPDIWGAIKRNALLENVTVDANG-KVDFAD 319 (532)
T ss_dssp ECCTTSSHHHHHCCTTEEEEESSEEEECSSCEEESCSEEEEECTTCCTTTCHHHHHHCSTTCEEESCEECTTC-CEETTC
T ss_pred EecCCCCHHHHhhCcCCCEEECCeeeeccCCceeccceEEEEeccCCCccChhHHHhcCcCceeeeeEECCCC-ccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 999999
Q ss_pred CcccccceEEEecccccCCC-CCCCCCCCceEEEEeecCCCCCCCccccCHHHHHHHHHhccccccccccccccCccccc
Q 005865 450 KSVTENTRAAYPIEYIPNAK-IPCVGPHPKNIILLACDAFGVLPPVSKLSLEQTMYHFISGYTALVAGTEEGVKEPRATF 528 (673)
Q Consensus 450 ~s~TeNtR~~yPi~~i~N~~-~~~~~~~P~~iIflt~DafgvlPPIskLt~eQA~~~FlsGyTAk~aGTE~Gv~eP~atF 528 (673)
.++|+|||++||+++|+|++ .+++++||++||||+||+|||||||+|||++||||||+||||||+||||+|++||+|||
T Consensus 320 ~s~t~NtR~~~P~~~i~n~~~~~~~~g~P~~IifL~~DafgvlPPvsklt~~qa~y~FlsG~tak~aGtE~Gv~ep~~tf 399 (532)
T 1ytm_A 320 KSVTENTRVSYPIFHIKNIVKPVSKAPAAKRVIFLSADAFGVLPPVSILSKEQTKYYFLSGFTAKLAGTERGITEPTPTF 399 (532)
T ss_dssp CSSCSCCEEEEEGGGSSSBCCSSSEESCEEEEEEEECCTTSCSCSEEECCHHHHHHHHHHCEEEECTTSBTTCCSCEEEE
T ss_pred CcccccceEEEEHHHCCCcccCCCcCCCCceEEEEecCCCCCCCCceecCHHHHHHHHHcCCcccccccccCccccCCcc
Confidence 99999999999999999998 88888999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccCChHHHHHHHHHHHHHcCCeEEEEccCCCCCcCCCCCccCHHHHHHHHHHHhcCcccCccceecCCCCcc
Q 005865 529 SACFGAAFIMLHPTKYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLE 608 (673)
Q Consensus 529 s~cFg~PF~p~~p~~yae~L~ekl~~~~v~v~LvNTGw~GG~yg~G~Ri~l~~Tr~li~ail~G~l~~~~~~~~p~fgl~ 608 (673)
|+|||+||+|+||.+||++|+++|++++++||||||||+ |+|+|||+++||+||++|++|+|++++|+.+|+|||+
T Consensus 400 s~cF~~PF~~~~~~~ya~~L~~~i~~~~~~vylvNTg~~----G~g~r~~~~~Tr~ii~ai~~G~l~~~~~~~~~~fg~~ 475 (532)
T 1ytm_A 400 SSCFGAAFLTLPPTKYAEVLVKRMEASGAKAYLVNTGWN----GTGKRISIKDTRGIIDAILDGSIDTANTATIPYFNFT 475 (532)
T ss_dssp CGGGCGGGCCSCHHHHHHHHHHHHHHHTCEEEEEECSBC----TTSSBCCHHHHHHHHHHHHTSGGGGSCEEEETTTTEE
T ss_pred cccccCCccCCCHHHHHHHHHHHHHhcCCeEEEEeCCcc----ccCccCCHHHHHHHHHHHhcCCcCCCCceeCCCCCcc
Confidence 999999999999999999999999999999999999998 5899999999999999999999999999999999999
Q ss_pred ccccCCCCCCCccCcccccCChHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcchHHHHhcCCCC
Q 005865 609 IPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGPLF 673 (673)
Q Consensus 609 vP~~~~gvp~~~L~P~~~w~d~~~Y~~~a~~La~~F~~nf~kf~~~~~~~~~~~~~~i~~a~p~~ 673 (673)
||++|||||+++|||+++|.|+++|+++|++|+++|++||+||. . ++++|++|||++
T Consensus 476 vP~~~~gv~~~~l~p~~~w~d~~~y~~~a~~L~~~F~~nf~~f~-~-------~~~~~~~~~p~~ 532 (532)
T 1ytm_A 476 VPTELKGVDTKILDPRNTYADASEWEVKAKDLAERFQKNFKKFE-S-------LGGDLVKAGPQL 532 (532)
T ss_dssp EESCCTTSCTGGGSGGGGSSSHHHHHHHHHHHHHHHHHHHTTC----------------------
T ss_pred CcccCCCCCHHhcCcccccCCHHHHHHHHHHHHHHHHHHHHhhc-C-------CCHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999998 3 789999999974
No 4
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*
Probab=100.00 E-value=2.6e-150 Score=1243.45 Aligned_cols=519 Identities=46% Similarity=0.818 Sum_probs=493.4
Q ss_pred hhhcCCCC-CcEEEcCCHHHHHHHHHhcCCCeEEecCCceEeeCCCcccCCcCCeeeecCCCcccccccCCCCCCCcCCH
Q 005865 143 ISDSALKF-THVLYNLSPAELYEQAVKYEKGSFITSSGALATLSGAKTGRSPRDKRVVKDETTERELWWGKGSPNIEMDE 221 (673)
Q Consensus 143 l~~~gl~~-~~v~~Nls~~eL~e~Al~~~eg~~lt~~GaL~~~tG~~TGRspkDk~IV~~~~~~~~v~wg~~~~n~~~~~ 221 (673)
|+.+||.. .+|+||++++||+|+|+++++| +++++|+|++.||++|||||+|||||+++.+++.+|||+ +|.++++
T Consensus 4 ~~~~~l~~~~~v~~n~~~~~l~e~a~~~g~g-~~~~~g~~~~~tg~~tgRsp~~~fIv~~~~~~~~~~w~~--~n~~~~~ 80 (529)
T 1j3b_A 4 LEALGIHPKKRVFWNTVSPVLVEHTLLRGEG-LLAHHGPLVVDTTPYTGRSPKDKFVVREPEVEGEIWWGE--VNQPFAP 80 (529)
T ss_dssp CGGGTCCCSSCEEESCCHHHHHHHHHHTTSC-EECTTSCEEECCTTCCSCCGGGEEEECCTTTTTTSCBTT--TBEEECH
T ss_pred hhhccCCCCCeEEECCChHHHHHHHHHcCCC-EECCCCCEEeCCCCcccCCCCceEEeCCCCcCCcccccc--ccCcCCH
Confidence 78899985 8899999999999999999987 589999999999999999999999999999999999998 8999999
Q ss_pred HHHHHHHHHHHHHHccCCcEEEEEeeecCCCCCceEEEEEcchhhHHHHhhccccCCC----hhhhccCCCCCEEEEEcC
Q 005865 222 HTFLVNRERAVDYLNSLDKVFVNDQFLNWDPEHRIKVRIVSARAYHSLFMHNMCIRPT----SEELEDFGTPDFTIYNAG 297 (673)
Q Consensus 222 ~~f~~l~~~~~~yl~~~~~lyV~D~~vG~d~~~~i~vrvit~~a~~aLf~~NLf~rp~----~~e~~~fg~pd~tI~~ap 297 (673)
+.|+.|++++.+||++++ |||+|+++|+++.+++++|+||+++||+|||+|||+||. .+|+++| +|||+||++|
T Consensus 81 e~f~~l~~~~~~~m~gr~-lyV~~~~~G~~~~~~~~~~~itd~a~~~lf~~~m~~rp~~~~~~~el~~~-~pd~~i~~~p 158 (529)
T 1j3b_A 81 EAFEALYQRVVQYLSERD-LYVQDLYAGADRRYRLAVRVVTESPWHALFARNMFILPRRFGNDDEVEAF-VPGFTVVHAP 158 (529)
T ss_dssp HHHHHHHHHHHHHHHTSC-EEEEEEEECSSTTTCEEEEEEESCHHHHHHHHHHSBCGGGGC------CC-CCSEEEEEET
T ss_pred HHHHHHHHHHHHHhcCCc-EEEEEEeeeCCcccCeeEEEEcChHHHHHHHHHHhcccCcccchhhhccC-CCCEEEEeCC
Confidence 999999999999999985 999999999999999999999999999999999999988 7888999 9999999999
Q ss_pred CCCCCcccCCCCcceEEEEecCCCeEEEEccccchhhhHHHHHHHHHhcccCceeecccccccCCCCCEEEEEecCCCCc
Q 005865 298 QFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVALFFGLSGTGK 377 (673)
Q Consensus 298 ~f~~~~~~~G~~s~~~i~id~~~~~~~I~Gt~Y~GEmKK~iltl~n~~l~~~G~LpmH~sanvg~~G~~alfFGLSGTGK 377 (673)
+|.++++.+|++++++|++|+++++++|+|++|+|||||++||+||++++++||||||||+|++++|++++|||||||||
T Consensus 159 ~f~~~~~~~G~~s~~~i~~~~~~~~i~i~Gt~Y~Ge~KK~~l~i~~~~~~~~G~L~~H~sa~~~~~g~~~~ffGlSGtGK 238 (529)
T 1j3b_A 159 YFQAVPERDGTRSEVFVGISFQRRLVLIVGTKYAGEIKKSIFTVMNYLMPKRGVFPMHASANVGKEGDVAVFFGLSGTGK 238 (529)
T ss_dssp TCCCCHHHHCCSSSCEEEEETTTTEEEEESCCCTHHHHHHHHHHHHHHGGGGTCEEEECEEEECTTCCEEEEEECTTSCH
T ss_pred CcccCcccCCCCCceEEEEECccCEEEEeCCccCcchHHHHHHHHHHHHHHCCeEeccceeeeCCCCcEEEEEccccCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCceeecCcceecCCCceecCCcEEEEecCCCCCCchhHHhhc-cccceEEeeEEcCCCCeeccCCCcccccc
Q 005865 378 TTLSTDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAI-KFGTVLENIVFDEHTREVDYLDKSVTENT 456 (673)
Q Consensus 378 TTLSadp~r~lIgDDe~~w~d~Gvfn~EgGcyaK~~dLs~e~EP~I~~ai-~~gailENV~ld~~~~~vdf~d~s~TeNt 456 (673)
||||++|+|.+||||||+|+++|+||+|+|||+||++|+++.||+||++| ++++|+|||++|++++.|||+|.++|+|+
T Consensus 239 TtLs~~p~r~lIgDD~~~w~~~Gv~n~E~G~y~k~~~ls~~~eP~i~~ai~~~~~ileNV~~d~dg~~v~~~~~~~t~N~ 318 (529)
T 1j3b_A 239 TTLSTDPERPLIGDDEHGWSEDGVFNFEGGCYAKVIRLSPEHEPLIYKASNQFEAILENVVVNPESRRVQWDDDSKTENT 318 (529)
T ss_dssp HHHTCBTTBCEEESSEEEECSSCEEESCSEEEEECTTCCTTTCHHHHHHHSSTTCEEESCEECTTTCCEETTCCSSCSCC
T ss_pred hhHhhccCcceEECchhhhccCceecccCceEEEecCCCCcchHHHHHHhCcCCceeEEeEECCCCCcccCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999 89999999999998779999999999999
Q ss_pred eEEEecccccCCCCCCCCCCCceEEEEeecCCCCCCCccccCHHHHHHHHHhccccccccccccccCcccccccccCCCC
Q 005865 457 RAAYPIEYIPNAKIPCVGPHPKNIILLACDAFGVLPPVSKLSLEQTMYHFISGYTALVAGTEEGVKEPRATFSACFGAAF 536 (673)
Q Consensus 457 R~~yPi~~i~N~~~~~~~~~P~~iIflt~DafgvlPPIskLt~eQA~~~FlsGyTAk~aGTE~Gv~eP~atFs~cFg~PF 536 (673)
|++||+++++|++.++..++|++||||+||+||+||||++||++||||||+||||||++|||+|++||+||||+||++||
T Consensus 319 R~~~P~~~~pn~~~~~~~g~P~~Iifl~~da~gvlPpV~~l~~~qa~~~f~sG~Tak~agtE~Gv~ep~ptFs~~f~~PF 398 (529)
T 1j3b_A 319 RSSYPIAHLENVVESGVAGHPRAIFFLSADAYGVLPPIARLSPEEAMYYFLSGYTARVAGTERGVTEPRATFSACFGAPF 398 (529)
T ss_dssp EEEEEGGGCSSBCTTSEECCEEEEEEEECCTTSCSCSEEEECHHHHHHHHHHCEEEEC---------CEEEECGGGCGGG
T ss_pred cEEEEHHHCCCCCCCCcCCCCCEEEEEEccCCCCCCCeecCCHHHHHHHHHccccccccccccCccccCCcccccccCCc
Confidence 99999999999998888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHHcCCeEEEEccCCCCCcCCCCCccCHHHHHHHHHHHhcCcccCccceecCCCCccccccCCCC
Q 005865 537 IMLHPTKYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGV 616 (673)
Q Consensus 537 ~p~~p~~yae~L~ekl~~~~v~v~LvNTGw~GG~yg~G~Ri~l~~Tr~li~ail~G~l~~~~~~~~p~fgl~vP~~~~gv 616 (673)
+++||.+|+++|.++|++++++||||||||+||+||+|+||++++||+||++|++|+|++++|+++|+|||+||++||||
T Consensus 399 ~~~~~~~ya~~L~~~~~~~~~~v~lVNTgw~gg~yg~g~r~~~~~tr~~i~ai~~G~l~~~~~~~~~~fg~~vp~~~~gv 478 (529)
T 1j3b_A 399 LPMHPGVYARMLGEKIRKHAPRVYLVNTGWTGGPYGVGYRFPLPVTRALLKAALSGALENVPYRRDPVFGFEVPLEAPGV 478 (529)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCEEEEEECSEESSSTTTSEECCHHHHHHHHHHHHHTGGGGSCEEECTTTCCEEESCBTTB
T ss_pred cCCCHHHHHHHHHHhhhhcCCeEEEEcCCcccCccCCCccCCHHHHHHHHHHHhcCCccCCceeECCccCccCcccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCcccccCChHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcchHHHHhcCCCC
Q 005865 617 PSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGPLF 673 (673)
Q Consensus 617 p~~~L~P~~~w~d~~~Y~~~a~~La~~F~~nf~kf~~~~~~~~~~~~~~i~~a~p~~ 673 (673)
|+++|+|+++|+|+++|+++|++|+++|++||+||.+. ++++|+++||++
T Consensus 479 ~~~~l~P~~~w~~~~~y~~~a~~L~~~f~~nf~~f~~~-------~~~~~~~~~p~~ 528 (529)
T 1j3b_A 479 PQELLNPRETWADKEAYDQQARKLARLFQENFQKYASG-------VAKEVAEAGPRT 528 (529)
T ss_dssp CGGGGCGGGGSSCHHHHHHHHHHHHHHHHHHHHHHHTT-------SCHHHHHTSCCC
T ss_pred ChhhcCcccccCCHHHHHHHHHHHHHHHHHHHHHhccc-------CCHHHHhcCCCC
Confidence 99999999999999999999999999999999999874 788999999974
No 5
>2faf_A Phosphoenolpyruvate carboxykinase; pepck, phosphoryl transfer, lyase; HET: 20S EPE 1PE; 1.70A {Gallus gallus} PDB: 2fah_A* 2qzy_A*
Probab=100.00 E-value=7e-32 Score=297.22 Aligned_cols=475 Identities=18% Similarity=0.207 Sum_probs=331.6
Q ss_pred CCCcEEEcCCHHH----HHHHHHhcCCCeEEec-CCceEeeCC-CcccCCcCCeeeecCCCcccccccCCCCCC------
Q 005865 149 KFTHVLYNLSPAE----LYEQAVKYEKGSFITS-SGALATLSG-AKTGRSPRDKRVVKDETTERELWWGKGSPN------ 216 (673)
Q Consensus 149 ~~~~v~~Nls~~e----L~e~Al~~~eg~~lt~-~GaL~~~tG-~~TGRspkDk~IV~~~~~~~~v~wg~~~~n------ 216 (673)
++.+||++...+| |.+++++.++...|.. .+...+.|. .-.+|.-...||+-+...+. |. .|
T Consensus 24 ~Pd~I~icdGS~eE~~~l~~~~v~~G~~~~L~k~~n~~l~~sdp~DvARve~rTfI~t~~~~da----gp--~n~~~g~~ 97 (608)
T 2faf_A 24 RPREVLLCDGSEEEGKELLRGLQDDGVLHPLPKYDNCWLARTDPRDVARVESKTVLVTPEQSDA----VP--PPPPSGGP 97 (608)
T ss_dssp CCSEEEECCCCHHHHHHHHHHHHHTTSEEECTTSBSCEEECCCTTCSSCCGGGEEEECSSGGGT----SC--CCCTTCCC
T ss_pred CCCEEEEcCCCHHHHHHHHHHHHhCCCeeecCCCCCceeccCChhhcceeccceEEecCchhhc----CC--CCcccccc
Confidence 3688999775544 7788888765433311 233444444 66788888889988654322 12 35
Q ss_pred ----CcCCHHHHH-HHHHHHHHHHccCCcEEEEEeeecC-CCCCceEEEEEcchhhHHHHhhccccCCChhhhccCCCCC
Q 005865 217 ----IEMDEHTFL-VNRERAVDYLNSLDKVFVNDQFLNW-DPEHRIKVRIVSARAYHSLFMHNMCIRPTSEELEDFGTPD 290 (673)
Q Consensus 217 ----~~~~~~~f~-~l~~~~~~yl~~~~~lyV~D~~vG~-d~~~~i~vrvit~~a~~aLf~~NLf~rp~~~e~~~fg~pd 290 (673)
+-|+++.+. .|.+++..-|++|. |||..-..|. .+.+......||+++|..+.|+-|. |-..+.++..+. +
T Consensus 98 ~~~~nw~~p~e~~~~l~~~f~G~M~GRT-MYViPFsMGP~gsp~s~~GVeiTDS~YVv~smriMt-R~g~~v~~~lg~-~ 174 (608)
T 2faf_A 98 PQLGNWMSPNAFQAAVQERFPGCMAGRP-LYVIPFSMGPPTSPLAKLGVQVTDSPYVVLSMRIMT-RVGPAVLQRLDD-D 174 (608)
T ss_dssp CCSCCEECHHHHHHHHHHHSTTTTTTSE-EEEEEEEESCTTCTTCEEEEEEESCHHHHHHHHHHS-EESHHHHTTCCS-C
T ss_pred ccccccCCHHHHHHHHHHhCCcccCCCE-EEEEeeecCCCCCCcccceeEeeCCHHHHHHHHHHH-hcCHHHHHHhhC-c
Confidence 678877764 47777788899985 9999988888 7888888999999999999988774 555566666655 7
Q ss_pred EE--EEEcCC-----------CCCCcccCCCCcceEEEEecCCCeEEEEccccchh---hhH-HHHHHHHHhcccCceee
Q 005865 291 FT--IYNAGQ-----------FPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGE---MKK-GLFSLMHYLMPKRQILS 353 (673)
Q Consensus 291 ~t--I~~ap~-----------f~~~~~~~G~~s~~~i~id~~~~~~~I~Gt~Y~GE---mKK-~iltl~n~~l~~~G~Lp 353 (673)
|+ |++... |+||+ .++.|+++++.++|++.|+.|.|+ -|| -.|+++.+++.++|||.
T Consensus 175 Fv~~vHSvG~pl~~~~~~~~~WPcn~------~~~~I~h~pe~r~I~S~GSgYGGNaLLGKKcfALRiAs~~ar~EGWLA 248 (608)
T 2faf_A 175 FVRCLHSVGRPLPLTEPLVSSWPCDP------SRVLVAHIPSERRIVSFGSGYGGNSLLGKKCFALRIASRMAQQQGWLA 248 (608)
T ss_dssp CEEEEEECSCCSSCSSCCSTTCCCCG------GGCEEEEEGGGTEEEEESCCSHHHHCTCCCCCTTHHHHHHHHHHTCEE
T ss_pred cceeecccCCcCCcccccCCCCccCC------CccEEEEECCCCeEEEecCCcCcchhhhhHHHHHHHHHHHhhhcChHH
Confidence 75 555432 33433 138999999999999999999999 455 46899999999999999
Q ss_pred ccccc-cc-CCCCCEEEEE--ecCCCCccccccc----cC--CceeecCcce--ecCCCc---eecCCcEEEEecCCCCC
Q 005865 354 LHSGC-NM-GKDGDVALFF--GLSGTGKTTLSTD----HN--RYLIGDDEHC--WSDNGV---SNIEGGCYAKCIDLSRE 418 (673)
Q Consensus 354 mH~sa-nv-g~~G~~alfF--GLSGTGKTTLSad----p~--r~lIgDDe~~--w~d~Gv---fn~EgGcyaK~~dLs~e 418 (673)
.|+-. .+ +++|++..|. +|||||||+|++. |. -..||||..- +..+|. .|.|.|+|.++.+++.+
T Consensus 249 EHMlIlgvt~p~g~~~yiaaAfPSacGKTnlAMl~p~~~gwkve~vGDDIawm~~~~dG~l~AiNPE~GfFGvapGt~~~ 328 (608)
T 2faf_A 249 EHMLILGVTSPSGEKRYMAAAFPSACGKTNLAMMTPSLPGWRIHCVGDDIAWMKFDDEGRLRAINPERGFFGVAPGTSSR 328 (608)
T ss_dssp ESCEEEEEECTTSCEEEEEEECSSCTTSCCGGGCCCSSTTCEEEEEESSCEEEEECTTSBEEEECCCSEEEEECTTCCTT
T ss_pred HHHHHheecCCCCcEEEEEEecccccchhhHhhcCCCCCCceeEEeecceeeeEECCCCcEEEecCCCCeeEecCCCCCC
Confidence 99974 22 5788875555 5999999999985 22 2489999664 446884 47899999999999999
Q ss_pred CchhHHhhccccceEEeeEEcCCCCeeccCCCccc-------------------------ccceEEEecccccCCCCC--
Q 005865 419 KEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVT-------------------------ENTRAAYPIEYIPNAKIP-- 471 (673)
Q Consensus 419 ~EP~I~~ai~~gailENV~ld~~~~~vdf~d~s~T-------------------------eNtR~~yPi~~i~N~~~~-- 471 (673)
+.|.++++++..+|++||.++++ +.|.|.+...+ .|+|++.|++..|++...
T Consensus 329 tnP~am~tl~~n~IFTNVa~t~d-G~v~WeG~~~~~~p~~~~~dw~G~~w~~~~g~paaHpNsRft~p~~qcp~id~~we 407 (608)
T 2faf_A 329 TNPNAMATIARNTIFTNVGLRSD-GGVYWDGLDEPTEPGVTYTSWLGKPWKHGDPEPCAHPNSRFCAPADQCPIMDPRWD 407 (608)
T ss_dssp TCHHHHHHTSBSCEEESCEEETT-SCEECTTCCCCCCTTCCEECTTSSEECTTCSSCSSCTTCEEEEEGGGCTTBCTTTT
T ss_pred cCHHHHHHhccCceeeeeEEcCC-CceecCCCCCCCCCCccccccCCCccCCCCCCcCcCCccceEeEHhhCCccCcccc
Confidence 99999999988899999999885 78888876542 899999999999998743
Q ss_pred CCCCCCce-EEEEeecCCCCCCCcccc-CHHHHHHHHHhccc------cccccccccccCcccccccccCCCCccCChHH
Q 005865 472 CVGPHPKN-IILLACDAFGVLPPVSKL-SLEQTMYHFISGYT------ALVAGTEEGVKEPRATFSACFGAAFIMLHPTK 543 (673)
Q Consensus 472 ~~~~~P~~-iIflt~DafgvlPPIskL-t~eQA~~~FlsGyT------Ak~aGTE~Gv~eP~atFs~cFg~PF~p~~p~~ 543 (673)
...|.|.+ |||-+++ ...+|+|.+. +...+++ .|.+ |...|+. |+.. |-++.-.||+.++..+
T Consensus 408 ~p~GVpIsaiiFggRR-~~~vPlV~ea~~W~hGV~---~Gasm~Se~Taaa~g~~-~~vr----~DPfAmlpF~gyn~gd 478 (608)
T 2faf_A 408 DPEGVPIDAIIFGGRR-PRGVPLVVEAFGWRHGVF---MGSAMRSEATAAAEHKG-GRLM----HDPFAMRPFFGYNAGR 478 (608)
T ss_dssp CTTCEEEEEEEEEECC-SSSSCSEEECSSHHHHHH---HHHTCBC-------------CC----BCGGGCGGGCSSCHHH
T ss_pred CCCCceEEEEEEcccC-CCCCCcEEEccCchhhhh---hhchhccccchhhcCCC-CcEe----eCcccccccccCCHHH
Confidence 23455755 5555666 6788999998 6777777 4665 2223322 3333 4556678999999999
Q ss_pred HHHHHHH---HHHHcCCeEEEEccCCCC--CcC---CCCCccCHHHHHHHHHHHhcCcccCccceecCCCCcccccc---
Q 005865 544 YAAMLAE---KMQKHGATGWLVNTGWSG--GSY---GSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTE--- 612 (673)
Q Consensus 544 yae~L~e---kl~~~~v~v~LvNTGw~G--G~y---g~G~Ri~l~~Tr~li~ail~G~l~~~~~~~~p~fgl~vP~~--- 612 (673)
|-+--.+ ++...--++|.||--..+ |.+ |.|+++ ..-.=|++.+. |+ ++-...|+ | .||+.
T Consensus 479 Y~~HWL~~g~~~~~k~PkIF~VNwFrk~~~GkflwPGfgeN~--RvL~Wi~~R~~-G~---~~a~eTpi-G-~iP~~~~L 550 (608)
T 2faf_A 479 YLEHWLSTGLRSNARLPRLFHVNWFLRDNEGRFVWPGFGHNA--RVLAWIFGRIQ-GR---DTARPTPI-G-WVPKEGDL 550 (608)
T ss_dssp HHHHHHHHTTSTTCBCCEEEEEESCCBCTTSSBSSCCGGGHH--HHHHHHHHHHT-TC---SCEEEETT-E-EEECTTSS
T ss_pred HHHHHhhhccccCCCCCcEEEEeeeeECCCCCCCCCCCccch--hHHHHHHHHhc-Cc---cCceeCCC-c-ccCCcccc
Confidence 9887333 221223679999965543 222 345544 22333455544 44 34466666 5 57764
Q ss_pred -CCCCCCCccCcccccCChHHHHHHHHHHHHHHHHHHhh-ccCCCCCCCCcchHHHHh
Q 005865 613 -IEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEG-FVNHKIGEDNKLTDEILA 668 (673)
Q Consensus 613 -~~gvp~~~L~P~~~w~d~~~Y~~~a~~La~~F~~nf~k-f~~~~~~~~~~~~~~i~~ 668 (673)
+.|++.+.++..- --+++.|.+.+..+. +.|++ |.+ +++++|.+
T Consensus 551 ~l~gl~~~~~~~l~-~v~~~~w~~e~~~~~----~~f~~~~g~-------~lP~el~~ 596 (608)
T 2faf_A 551 DLGGLPGVDYSQLF-PMEKGFWEEECRQLR----EYYGENFGA-------DLPRDVMA 596 (608)
T ss_dssp CCTTCTTCCHHHHS-CCCHHHHHHHHHHHH----HHHHHHTGG-------GSCHHHHH
T ss_pred CCCCcCHHHHHHHc-CcCHHHHHHHHHHHH----HHHHHhhcc-------CCCHHHHH
Confidence 6677444444333 247888888887664 45555 543 37888743
No 6
>2zci_A Phosphoenolpyruvate carboxykinase [GTP], phosphoenolpyruvate; GTP-dependent, signaling protein, lyase; 2.30A {Corynebacterium glutamicum}
Probab=100.00 E-value=4e-31 Score=291.81 Aligned_cols=485 Identities=16% Similarity=0.173 Sum_probs=333.3
Q ss_pred CCCcEEEcCCHHH----HHHHHHhcCCCeEEec---CCceEeeCC-CcccCCcCCeeeecCCCcccccccCCCCCCCcCC
Q 005865 149 KFTHVLYNLSPAE----LYEQAVKYEKGSFITS---SGALATLSG-AKTGRSPRDKRVVKDETTERELWWGKGSPNIEMD 220 (673)
Q Consensus 149 ~~~~v~~Nls~~e----L~e~Al~~~eg~~lt~---~GaL~~~tG-~~TGRspkDk~IV~~~~~~~~v~wg~~~~n~~~~ 220 (673)
+|.+||++...+| |.+++++.++...|.. .+...+.|. .-.+|.-...||+-+...+. |. .|+-|+
T Consensus 32 ~Pd~I~icdGS~eE~~~l~~~~v~~G~~~~L~~~k~~n~~l~~sdp~DvARve~rTfI~t~~~~da----gp--tnnw~~ 105 (610)
T 2zci_A 32 QPEAVVFVDGSQAEWDRMAEDLVEAGTLIKLNEEKRPNSYLARSNPSDVARVESRTFICSEKEEDA----GP--TNNWAP 105 (610)
T ss_dssp CCSEEEECCCCHHHHHHHHHHHHHTTSEEECCTTTSTTCEEECCCGGGSSCCGGGEEECCSSTTTT----CT--TSCCCC
T ss_pred CCCEEEEcCCCHHHHHHHHHHHHhCCCeeecCCCCCCceeecCCChhhcceeccceEEecCchhhc----CC--CcCccC
Confidence 4688999876544 7888888765433322 345555555 56788888889987654332 22 477899
Q ss_pred HHHHH-HHHHHHHHHHccCCcEEEEEeeecC-CCCCceEEEEEcchhhHHHHhhccccCCChhhhccCC-CCCEE--EEE
Q 005865 221 EHTFL-VNRERAVDYLNSLDKVFVNDQFLNW-DPEHRIKVRIVSARAYHSLFMHNMCIRPTSEELEDFG-TPDFT--IYN 295 (673)
Q Consensus 221 ~~~f~-~l~~~~~~yl~~~~~lyV~D~~vG~-d~~~~i~vrvit~~a~~aLf~~NLf~rp~~~e~~~fg-~pd~t--I~~ 295 (673)
++.+. .|.+++..-|++|. |||..-..|. .+.+......||+++|..+.|+-|. |-..+.++..+ ..+|+ |++
T Consensus 106 p~e~~~~l~~~f~G~M~GRT-MYViPfsMGP~gsp~s~~GVeiTDS~YVv~smrIMt-R~g~~v~~~lg~~~~Fv~~vHS 183 (610)
T 2zci_A 106 PQAMKDEMSKHYAGSMKGRT-MYVVPFCMGPISDPDPKLGVQLTDSEYVVMSMRIMT-RMGIEALDKIGANGSFVRCLHS 183 (610)
T ss_dssp HHHHHHHHHHHHTTTTTTSE-EEEEEEEESCTTCSSCEEEEEEESCHHHHHHHHHHS-EESHHHHHHHTTTCCCEEEEEE
T ss_pred HHHHHHHHHHhCCcccCCCE-EEEEeeecCCCCCCcccceeEeeCCHHHHHHHHHHH-hcCHHHHHHhCCCCCeeeeecc
Confidence 77764 47778888899985 9999988888 7788888999999999999988774 43444443333 24664 555
Q ss_pred cCCCCCCcccC----CCCcceEEEEecCCCeEEEEccccchh---hhH-HHHHHHHHhcccCceeeccccc-cc-CCCCC
Q 005865 296 AGQFPCNRYTH----YMTSSTSIDINLARKEMVILGTQYAGE---MKK-GLFSLMHYLMPKRQILSLHSGC-NM-GKDGD 365 (673)
Q Consensus 296 ap~f~~~~~~~----G~~s~~~i~id~~~~~~~I~Gt~Y~GE---mKK-~iltl~n~~l~~~G~LpmH~sa-nv-g~~G~ 365 (673)
... +..+... -++.++.|+++++.++|++.|+.|.|+ -|| -.|+++.+++.++|||..|+-. .+ +++|+
T Consensus 184 vG~-pl~~~~~dv~wPc~~~~~I~h~pe~r~I~S~GSgYGGNaLLGKKcfALRiAs~~ar~EGWLAEHMlIlgvt~P~g~ 262 (610)
T 2zci_A 184 VGA-PLEPGQEDVAWPCNDTKYITQFPETKEIWSYGSGYGGNAILAKKCYALRIASVMAREEGWMAEHMLILKLINPEGK 262 (610)
T ss_dssp CSC-CCCSSCCCCSSCCCSSCEEEEETTTTEEEEESCCSHHHHCTCCCCCTTHHHHHHHHHHTCEEECCEEEEEECSSSC
T ss_pred cCC-cCCCCCcCCCCCCCCceEEEEecCcCeEEEecCCcCcchhhhhHHHHHHHHHHHhhhcChHHHHHHHheecCCCCc
Confidence 442 1111000 112358999999999999999999999 455 4689999999999999999974 22 57888
Q ss_pred EEEEE--ecCCCCccccccc----cC--CceeecCcce--ecCCCce--ecCCcEEEEecCCCCCCchhHHhhc-cccce
Q 005865 366 VALFF--GLSGTGKTTLSTD----HN--RYLIGDDEHC--WSDNGVS--NIEGGCYAKCIDLSREKEPDIWNAI-KFGTV 432 (673)
Q Consensus 366 ~alfF--GLSGTGKTTLSad----p~--r~lIgDDe~~--w~d~Gvf--n~EgGcyaK~~dLs~e~EP~I~~ai-~~gai 432 (673)
+..|. +|||||||+|++. |. -..||||..- +..+|++ |.|.|+|.++.+++..+.|.+++++ +..+|
T Consensus 263 ~~yvaaAfPSacGKTnlAMl~p~~~gwkve~vGDDIawm~~~~dGl~AiNPE~GfFGvapGt~~~tnP~am~~~~~~n~I 342 (610)
T 2zci_A 263 AYHIAAAFPSACGKTNLAMITPTIPGWTAQVVGDDIAWLKLREDGLYAVNPENGFFGVAPGTNYASNPIAMKTMEPGNTL 342 (610)
T ss_dssp EEEEEEECSSSHHHHHHHTCCCSSTTCEEEEEESSCEEEEECSSSEEEECCCSEEEEECTTCCTTTCHHHHHHHTTCCCE
T ss_pred EEEEEEecccccchhhHhhcCCCCCCceeEEeecceeeEeeCCCceeEecCCCceeEecCCCCCCcCHHHHHHhccCCce
Confidence 75555 5999999999985 22 2489999664 4467865 7899999999999999999999999 78899
Q ss_pred EEeeEEcCCCCeeccCCCcc-----------------------cccceEEEecccccCCCCC--CCCCCCce-EEEEeec
Q 005865 433 LENIVFDEHTREVDYLDKSV-----------------------TENTRAAYPIEYIPNAKIP--CVGPHPKN-IILLACD 486 (673)
Q Consensus 433 lENV~ld~~~~~vdf~d~s~-----------------------TeNtR~~yPi~~i~N~~~~--~~~~~P~~-iIflt~D 486 (673)
++||.++++ +.|.|.+... |.|+|++.|++..|++... ...|.|.+ |||-+++
T Consensus 343 FtNVa~t~d-G~v~WeG~~~~~p~~~~dw~G~~w~~~~~~paaHpNsRft~p~~qcp~i~~~we~p~GVpIsaiiFggRR 421 (610)
T 2zci_A 343 FTNVALTDD-GDIWWEGMDGDAPAHLIDWMGNDWTPESDENAAHPNSRYCVAIDQSPAAAPEFNDWEGVKIDAILFGGRR 421 (610)
T ss_dssp EESCEEETT-SCEECTTCSSCCCSCEECTTSCEECTTCSSCSSCTTCEEEEEGGGCTTBCGGGGCTTCEECSEEEEECCC
T ss_pred EeeeEEcCC-CcccCCCCCCCCCCcccccCCCccCCCCCCcCcCCccceEeEHhhCCccCccccCCCCceEEEEEEcccC
Confidence 999999985 7888887665 3899999999999998743 23456755 5555666
Q ss_pred CCCCCCCcccc-CHHHHHHHHHhccc--cc-cccccccccCcccccccccCCCCccCChHHHHHHH---HHHHHHcCCeE
Q 005865 487 AFGVLPPVSKL-SLEQTMYHFISGYT--AL-VAGTEEGVKEPRATFSACFGAAFIMLHPTKYAAML---AEKMQKHGATG 559 (673)
Q Consensus 487 afgvlPPIskL-t~eQA~~~FlsGyT--Ak-~aGTE~Gv~eP~atFs~cFg~PF~p~~p~~yae~L---~ekl~~~~v~v 559 (673)
...+|+|.+. +...+++ .|.| +. .+-+..| ..-+-.|-++.-.||+.++..+|-+-- .+++...--++
T Consensus 422 -~~~vPlV~ea~~W~hGV~---~Gasm~Se~taa~a~g-~~~~vr~DPfAmlpF~gyn~gdY~~HWL~~g~~~~~k~PkI 496 (610)
T 2zci_A 422 -ADTVPLVTQTYDWEHGTM---VGALLASGQTAASAEA-KVGTLRHDPMAMLPFIGYNAGEYLQNWIDMGNKGGDKMPSI 496 (610)
T ss_dssp -SSSSCSEEECSSHHHHHH---HHHTCBCCC---------CCCCCBCGGGCTTTCCSCHHHHHHHHHHHHHHHGGGSCEE
T ss_pred -CCCCCcEEEccCchhhhh---hhchhcccccchhhcC-CCceEeeCcccccccCcCCHHHHHHHHhhhcccCCCCCCcE
Confidence 6788999998 6777777 4665 11 1110123 122223556667899999999999873 33432344689
Q ss_pred EEEccCCCC--CcC---CCCCccCHHHHHHHHHHHhcCcccCccceecCCCCccccc----cCCCCC--CCccCcccccC
Q 005865 560 WLVNTGWSG--GSY---GSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPT----EIEGVP--SEILDPENTWS 628 (673)
Q Consensus 560 ~LvNTGw~G--G~y---g~G~Ri~l~~Tr~li~ail~G~l~~~~~~~~p~fgl~vP~----~~~gvp--~~~L~P~~~w~ 628 (673)
|.||--..+ |.+ |.|+++ ..-.=|++.+. |+ ++-...|+ | .||+ .+.|++ .+.++..- --
T Consensus 497 F~VNwFrkd~~GkflwPGfgeN~--RvL~Wi~~R~~-G~---~~a~eTpi-G-~iP~~~~L~l~gld~~~~~~~~l~-~v 567 (610)
T 2zci_A 497 FLVNWFRRGEDGRFLWPGFGDNS--RVLKWVIDRIE-GH---VGADETVV-G-HTAKAEDLDLDGLDTPIEDVKEAL-TA 567 (610)
T ss_dssp EEECTTCBCTTSCBSSCCGGGHH--HHHHHHHHHHH-TC---CCCEECSS-S-EECCGGGSCCSCCCSCCTTHHHHH-CC
T ss_pred EEEeeeeECCCCCCCCCCCccch--hhHHHHHHHhc-Cc---cCceeCCC-c-ccCCccccCCcCCCCCHHHHHHHc-Cc
Confidence 999965543 222 345544 22333455554 44 34456666 6 6777 566664 22232222 24
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcchHHHHh
Q 005865 629 DMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILA 668 (673)
Q Consensus 629 d~~~Y~~~a~~La~~F~~nf~kf~~~~~~~~~~~~~~i~~ 668 (673)
+++.|.+.+..+ ++.|++|.+ +++++|.+
T Consensus 568 ~~~~w~~e~~~~----~~~f~~~g~-------~lP~el~~ 596 (610)
T 2zci_A 568 PAEQWANDVEDN----AEYLTFLGP-------RVPAEVHS 596 (610)
T ss_dssp CHHHHHHTHHHH----HHHHHHTCT-------TSCHHHHH
T ss_pred CHHHHHHHHHHH----HHHHHHhcc-------CcCHHHHH
Confidence 677777777655 567777744 38888743
No 7
>3moe_A Phosphoenolpyruvate carboxykinase, cytosolic [GTP; gluconeogenesis, lyase; HET: GTP SPV 1PE; 1.25A {Rattus norvegicus} PDB: 3mof_A* 3moh_A* 3dtb_A* 2qey_A* 2qf1_A* 2qew_A* 2rk7_A 2rk8_A 2rka_A* 2rkd_A 2rke_A 2qf2_A* 3dt2_A* 3dt7_A* 3dt4_A* 1khb_A* 1khe_A* 1khf_A* 1khg_A 1m51_A* ...
Probab=99.97 E-value=2.1e-28 Score=269.89 Aligned_cols=479 Identities=19% Similarity=0.198 Sum_probs=323.5
Q ss_pred CCCcEEEcCCHHH----HHHHHHhcCCCeEEec-CC-ceEeeCCCcccCCcCCeeeecCCCccccc--ccCCCCCCCcCC
Q 005865 149 KFTHVLYNLSPAE----LYEQAVKYEKGSFITS-SG-ALATLSGAKTGRSPRDKRVVKDETTEREL--WWGKGSPNIEMD 220 (673)
Q Consensus 149 ~~~~v~~Nls~~e----L~e~Al~~~eg~~lt~-~G-aL~~~tG~~TGRspkDk~IV~~~~~~~~v--~wg~~~~n~~~~ 220 (673)
++.+||++...+| |.+++++.++-..|.+ .+ .|+...-.-..|.-..+||+-+...+.-- -=|.+.-|+-|+
T Consensus 41 ~Pd~I~icdGS~eE~~~l~~~~ve~G~~~~L~k~pn~~l~~sdP~DvARve~rTfI~t~~~~da~p~~~~g~~~~nnwm~ 120 (624)
T 3moe_A 41 QPEYIHICDGSEEEYGRLLAHMQEEGVIRKLKKYDNCWLALTDPRDVARIESKTVIITQEQRDTVPIPKSGQSQLGRWMS 120 (624)
T ss_dssp CCSEEEECCCCHHHHHHHHHHHHHTTSCEECTTSBSCEEECCCTTCCSCCGGGEEEECSSHHHHSCCCSSSCCSSCCEEC
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHHcCCcccccCCCCCEEEeCChhhccccccceEEecCchhhcCCcccCCcCcccccCC
Confidence 4688999886553 8888888776544431 24 34444444678877777998654322100 000112577899
Q ss_pred HHHHHH-HHHHHHHHHccCCcEEEEEeeecC-CCCCceEEEEEcchhhHHHHhhccccCCChhhhccCCCCCEE--EEEc
Q 005865 221 EHTFLV-NRERAVDYLNSLDKVFVNDQFLNW-DPEHRIKVRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFT--IYNA 296 (673)
Q Consensus 221 ~~~f~~-l~~~~~~yl~~~~~lyV~D~~vG~-d~~~~i~vrvit~~a~~aLf~~NLf~rp~~~e~~~fg~pd~t--I~~a 296 (673)
++.+.. +.+++..-|++|. |||..-..|. .+.+......||+++|..+.|+-|. |-..+.++..+..+|+ |++.
T Consensus 121 p~e~~~~l~~~f~G~M~GRT-MYViPFsMGP~GSp~s~~GVeiTDS~YVv~smrIMt-R~g~~vld~lg~~~Fv~clHSv 198 (624)
T 3moe_A 121 EEDFEKAFNARFPGCMKGRT-MYVIPFSMGPLGSPLAKIGIELTDSPYVVASMRIMT-RMGTSVLEALGDGEFIKCLHSV 198 (624)
T ss_dssp HHHHHHHHHTTSTTTTTTSE-EEEEEEEESCSSCTTCEEEEEEESCHHHHHHHHHHS-EESHHHHHHHTTCCCEEEEEEC
T ss_pred HHHHHHHHHhhCcccccCCe-EEEEeeecCCCCCCccceeEEccCcHHHHHhHHHHh-hCCHHHHHhhcCCCeeeeeccc
Confidence 877754 5667788889985 9999988888 6778888889999999999988774 4444445433334664 5553
Q ss_pred C-----------CCCCCcccCCCCcceEEEEecCCCeEEEEccccchh---hhHH-HHHHHHHhcccCceeeccccc-cc
Q 005865 297 G-----------QFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGE---MKKG-LFSLMHYLMPKRQILSLHSGC-NM 360 (673)
Q Consensus 297 p-----------~f~~~~~~~G~~s~~~i~id~~~~~~~I~Gt~Y~GE---mKK~-iltl~n~~l~~~G~LpmH~sa-nv 360 (673)
. .|+||+ ..+.|+.++++++|+..|+.|.|+ -||. .|+++.+++.++|||+.|+.. .+
T Consensus 199 G~pl~~~~~~v~~Wpcnp------~k~~I~h~pe~r~I~S~GSgYGGNaLLGKKcfALRiAS~~Ar~EGWLAEHMlIlgi 272 (624)
T 3moe_A 199 GCPLPLKKPLVNNWACNP------ELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRIASRLAKEEGWLAEHMLILGI 272 (624)
T ss_dssp SCCSSCSSCCBTTBCCCG------GGCEEEEEGGGTEEEEESCCSHHHHCTCCCCCTTHHHHHHHHHHTCEEESCEEEEE
T ss_pred CCCCCCCCccCCCCCCCC------CceEEEEecccCeEEEecCCcCcchhhhHHHHHHHHHHHHhhhcccHHHhHHHhee
Confidence 2 233433 236899999999999999999999 6877 999999999999999999984 22
Q ss_pred -CCCCCEEEEEe--cCCCCccccccc-c---CC--ceeecCcce--ecCCCc---eecCCcEEEEecCCCCCCchhHHhh
Q 005865 361 -GKDGDVALFFG--LSGTGKTTLSTD-H---NR--YLIGDDEHC--WSDNGV---SNIEGGCYAKCIDLSREKEPDIWNA 426 (673)
Q Consensus 361 -g~~G~~alfFG--LSGTGKTTLSad-p---~r--~lIgDDe~~--w~d~Gv---fn~EgGcyaK~~dLs~e~EP~I~~a 426 (673)
+++|++..|.| +|+||||+|++. | +- ..||||..- |+.+|. +|.|.|.|....+.+..+.|.++++
T Consensus 273 t~P~G~~~yiaaAFPSaCGKTnlAMl~p~~~Gwkve~vGDDIAwm~~~~dG~l~AiNPE~GfFGvapGt~~~tnp~am~~ 352 (624)
T 3moe_A 273 TNPEGKKKYLAAAFPSACGKTNLAMMNPTLPGWKVECVGDDIAWMKFDAQGNLRAINPENGFFGVAPGTSVKTNPNAIKT 352 (624)
T ss_dssp ECTTSCEEEEEEECCTTSSHHHHHTCCCSSTTCEEEEEESSCEEEEECTTSBEEEECCCSEEEEECTTCSTTTCHHHHHH
T ss_pred cCCCCcEEEEEEEcccccccccHhhcCCCCCCceeEEecccEEEEEECCCccEEeecCCCCeeeecCCCCCccCHHHHHh
Confidence 68898877766 999999999985 3 22 589999653 356894 5899999999999999999999999
Q ss_pred ccccceEEeeEEcCCCCeeccCC----------------Ccc---------cccceEEEecccccCCCCC--CCCCCCce
Q 005865 427 IKFGTVLENIVFDEHTREVDYLD----------------KSV---------TENTRAAYPIEYIPNAKIP--CVGPHPKN 479 (673)
Q Consensus 427 i~~gailENV~ld~~~~~vdf~d----------------~s~---------TeNtR~~yPi~~i~N~~~~--~~~~~P~~ 479 (673)
++..+|+.||.+.++ +.|.|.+ ..- |.|+|++.|+...|++... ...|.|.+
T Consensus 353 l~~n~IFTNVa~t~d-G~v~WeG~~~~~p~~~~~~dw~G~~w~~~~~~p~aHPNsRft~p~~qcp~~~p~we~p~GVpIs 431 (624)
T 3moe_A 353 IQKNTIFTNVAETSD-GGVYWEGIDEPLAPGVTITSWKNKEWRPQDEEPCAHPNSRFCTPASQCPIIDPAWESPEGVPIE 431 (624)
T ss_dssp TTBSCEEESCEEETT-SCEECTTCCCCCCTTCCEECTTSSEECTTSSSCSSCTTCEEEEEGGGCTTBCTTTTCTTCEEEE
T ss_pred hcCCceEeeeEECCC-CCeecCCCCCCCCCCcceeeCCCCCCCCCCCCcCCCCcccccccHhhCCCCCccccCCCCceEE
Confidence 988999999999875 5554443 211 5899999999999998743 34578888
Q ss_pred EEEE-eecCCCCCCCcccc-CHHHHHHHHHhccc------cccccccccccCcccccccccCCCCccCChHHHHHHHHHH
Q 005865 480 IILL-ACDAFGVLPPVSKL-SLEQTMYHFISGYT------ALVAGTEEGVKEPRATFSACFGAAFIMLHPTKYAAMLAEK 551 (673)
Q Consensus 480 iIfl-t~DafgvlPPIskL-t~eQA~~~FlsGyT------Ak~aGTE~Gv~eP~atFs~cFg~PF~p~~p~~yae~L~ek 551 (673)
.|++ ++| ...+|+|.+- +++..++ .|.| |...|.. |+.. +-++.-.||+.++.++|.+--.+.
T Consensus 432 aiiFGGRr-~~~vPlV~ea~~W~hGV~---~gA~m~SE~TAAa~~~~-g~vr----~DPmAMlPF~gYn~gdY~~HWL~~ 502 (624)
T 3moe_A 432 GIIFGGRR-PAGVPLVYEALSWQHGVF---VGAAMRSEATAGAEHKG-KVIM----HDPFAMRPFFGYNFGKYLAHWLSM 502 (624)
T ss_dssp EEEEECCC-SSSCCSEEECSSHHHHHH---HHHTCEEECC------C-CCEE----ECGGGCTTTCSSCHHHHHHHHHHG
T ss_pred EEEEcccC-CCCCCcEEEecCcchhhh---hhhhhhhhHhHHhhcCC-CcEE----ECccccCCCCcCCHHHHHHHHHHh
Confidence 6655 666 5688999976 8999988 3544 3222333 4443 334456799999999998764443
Q ss_pred HH---HcCCeEEEEc---cCCCCC----cCCCCCccCHHHHHHHHHHHhcCcccCccceecCCCCccccc----cCCCCC
Q 005865 552 MQ---KHGATGWLVN---TGWSGG----SYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPT----EIEGVP 617 (673)
Q Consensus 552 l~---~~~v~v~LvN---TGw~GG----~yg~G~Ri~l~~Tr~li~ail~G~l~~~~~~~~p~fgl~vP~----~~~gvp 617 (673)
-+ ..--++|-|| .+--|. .||.-.|+ |+. |++.+. |+ +.....|+ | .||+ .+.|++
T Consensus 503 g~~~~~k~PkIF~VNwFrkd~~GkFLWPGfgeN~RV-L~W---i~~R~~-G~---~~a~eTpI-G-~iP~~~~ldl~gL~ 572 (624)
T 3moe_A 503 AHRPAAKLPKIFHVNWFRKDKNGKFLWPGFGENSRV-LEW---MFGRIE-GE---DSAKLTPI-G-YVPKEDALNLKGLG 572 (624)
T ss_dssp GGSTTCBCCEEEEECSCCBCTTSCBSSCCGGGGHHH-HHH---HHHHHT-TC---SCEEEETT-E-EEECTTTSCCTTCT
T ss_pred cccCCCCCCcEEEEeeeEECCCCCCcCCCCcchhHH-HHH---HHHHhc-Cc---cceeecCC-e-ecCCccccCcccCC
Confidence 22 2347889888 222121 13333444 333 444443 65 23445554 3 2444 245653
Q ss_pred CCccCcccccCChHHHHHHHHHHHHHHHHHHh-hccCCCCCCCCcchHHHH
Q 005865 618 SEILDPENTWSDMKAYKDTLLKLGTLFKKNFE-GFVNHKIGEDNKLTDEIL 667 (673)
Q Consensus 618 ~~~L~P~~~w~d~~~Y~~~a~~La~~F~~nf~-kf~~~~~~~~~~~~~~i~ 667 (673)
.+-+... .=-|++.+.+.++.+. +.|+ ||.+ +++.+|.
T Consensus 573 ~~d~~~l-~~v~~~~W~~E~~~i~----~~f~~~~g~-------~lP~el~ 611 (624)
T 3moe_A 573 DVNVEEL-FGISKEFWEKEVEEID----KYLEDQVNA-------DLPYEIE 611 (624)
T ss_dssp TSCHHHH-HCCCHHHHHHHHHHHH----HHHHHHTGG-------GCCHHHH
T ss_pred HHHHHHH-cCcCHHHHHHHHHHHH----HHHHhhccC-------CCCHHHH
Confidence 2211111 1125666666665554 4454 6765 3888874
No 8
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=97.21 E-value=9.1e-05 Score=72.51 Aligned_cols=44 Identities=25% Similarity=0.222 Sum_probs=36.7
Q ss_pred eeecccccccCCCCCEEEEEecCCCCccccccc---cCCceeecCcce
Q 005865 351 ILSLHSGCNMGKDGDVALFFGLSGTGKTTLSTD---HNRYLIGDDEHC 395 (673)
Q Consensus 351 ~LpmH~sanvg~~G~~alfFGLSGTGKTTLSad---p~r~lIgDDe~~ 395 (673)
-+.+||++ +..+|..++|.|.||+|||||+.. .+..||+||-..
T Consensus 4 ~~~lHas~-v~v~G~gvli~G~SGaGKStlal~L~~rG~~lvaDD~v~ 50 (181)
T 3tqf_A 4 KQTWHANF-LVIDKMGVLITGEANIGKSELSLALIDRGHQLVCDDVID 50 (181)
T ss_dssp CEEEESEE-EEETTEEEEEEESSSSSHHHHHHHHHHTTCEEEESSEEE
T ss_pred cEEEEEEE-EEECCEEEEEEcCCCCCHHHHHHHHHHcCCeEecCCEEE
Confidence 36899998 667788899999999999998763 456899999665
No 9
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=97.06 E-value=0.00017 Score=75.90 Aligned_cols=47 Identities=28% Similarity=0.360 Sum_probs=37.7
Q ss_pred ceeecccccccCCCCCEEEEEecCCCCccccccc---cCCceeecCcceec
Q 005865 350 QILSLHSGCNMGKDGDVALFFGLSGTGKTTLSTD---HNRYLIGDDEHCWS 397 (673)
Q Consensus 350 G~LpmH~sanvg~~G~~alfFGLSGTGKTTLSad---p~r~lIgDDe~~w~ 397 (673)
..+++||++ +..+|..++|.|.||+|||||+.. .+..||+||-....
T Consensus 134 ~~~~~H~~~-v~~~g~gvli~G~sG~GKStlal~l~~~G~~lv~DD~v~i~ 183 (312)
T 1knx_A 134 TVAQIHGVL-LEVFGVGVLLTGRSGIGKSECALDLINKNHLFVGDDAIEIY 183 (312)
T ss_dssp CCEEEEEEE-EEETTEEEEEEESSSSSHHHHHHHHHTTTCEEEEEEEEEEE
T ss_pred hcceeEEEE-EEECCEEEEEEcCCCCCHHHHHHHHHHcCCEEEeCCEEEEE
Confidence 459999997 656778899999999999998763 45679999966533
No 10
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.04 E-value=0.00025 Score=74.70 Aligned_cols=54 Identities=28% Similarity=0.311 Sum_probs=40.7
Q ss_pred HHHHhcc-cCceeecccccccCCCCCEEEEEecCCCCccccccc---cCCceeecCcce
Q 005865 341 LMHYLMP-KRQILSLHSGCNMGKDGDVALFFGLSGTGKTTLSTD---HNRYLIGDDEHC 395 (673)
Q Consensus 341 l~n~~l~-~~G~LpmH~sanvg~~G~~alfFGLSGTGKTTLSad---p~r~lIgDDe~~ 395 (673)
+.+|+.. -..++++||++ +..+|..++|.|.||+|||||+.. .+..||+||...
T Consensus 121 l~~~l~~~~~~~~~~H~~~-v~~~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~ 178 (314)
T 1ko7_A 121 LTTFLEHELARTTSLHGVL-VDVYGVGVLITGDSGIGKSETALELIKRGHRLVADDNVE 178 (314)
T ss_dssp HHHHHHHHTCEEEEEESEE-EEETTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEE
T ss_pred HHHHHHHhhccceeeeEEE-EEECCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEE
Confidence 3344433 34689999997 445788899999999999998653 356799999665
No 11
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.77 E-value=0.00033 Score=69.80 Aligned_cols=49 Identities=27% Similarity=0.221 Sum_probs=37.3
Q ss_pred cCceeecccccccCCCCCEEEEEecCCCCccccccc---cCCceeecCcceec
Q 005865 348 KRQILSLHSGCNMGKDGDVALFFGLSGTGKTTLSTD---HNRYLIGDDEHCWS 397 (673)
Q Consensus 348 ~~G~LpmH~sanvg~~G~~alfFGLSGTGKTTLSad---p~r~lIgDDe~~w~ 397 (673)
..+.+++||++ +...|..++|.|+||+|||||+.. -...+|.||-..+.
T Consensus 19 ~a~~~~lHa~~-v~~~g~~ilI~GpsGsGKStLA~~La~~g~~iIsdDs~~v~ 70 (205)
T 2qmh_A 19 LAERRSMHGVL-VDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVY 70 (205)
T ss_dssp --CCCCEESEE-EEETTEEEEEECCCTTTTHHHHHHHHTTTCEEEESSEEEEE
T ss_pred cCcceeeeEEE-EEECCEEEEEECCCCCCHHHHHHHHHHhCCeEEecchhhee
Confidence 46678999997 556678899999999999998764 23379999966543
No 12
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.92 E-value=0.018 Score=54.15 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=17.8
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.|..+++.|+||+|||||..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~ 25 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVR 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 57899999999999999754
No 13
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.77 E-value=0.018 Score=53.60 Aligned_cols=21 Identities=33% Similarity=0.678 Sum_probs=18.4
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..+++.|+||+|||||..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~ 27 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAE 27 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 567889999999999999754
No 14
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.71 E-value=0.016 Score=54.11 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=18.8
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..+++.|+||+|||||..
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 468899999999999999876
No 15
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.69 E-value=0.019 Score=54.63 Aligned_cols=22 Identities=45% Similarity=0.676 Sum_probs=19.2
Q ss_pred CCCCCEEEEEecCCCCcccccc
Q 005865 361 GKDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 361 g~~G~~alfFGLSGTGKTTLSa 382 (673)
...|..+++.|+||||||||+.
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHH
Confidence 4678899999999999999754
No 16
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.64 E-value=0.022 Score=53.47 Aligned_cols=20 Identities=15% Similarity=0.419 Sum_probs=17.6
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.|..++|.|+||+|||||..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~ 23 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKN 23 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 47789999999999999754
No 17
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.46 E-value=0.024 Score=54.25 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=18.0
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..+++.|+||+|||||..
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~ 38 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVR 38 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999754
No 18
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.43 E-value=0.022 Score=52.33 Aligned_cols=19 Identities=21% Similarity=0.323 Sum_probs=16.6
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
+..+++.|+||+||||++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4579999999999999765
No 19
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.19 E-value=0.028 Score=52.74 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=18.2
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..++|.|+||+|||||+.
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 357889999999999999765
No 20
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.04 E-value=0.03 Score=53.91 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=18.4
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..++|.|+||+|||||..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHH
Confidence 468899999999999999754
No 21
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.00 E-value=0.024 Score=54.02 Aligned_cols=20 Identities=35% Similarity=0.321 Sum_probs=17.6
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.|..++|.|+||+|||||+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~ 30 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIK 30 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 47789999999999999765
No 22
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.90 E-value=0.024 Score=51.82 Aligned_cols=19 Identities=26% Similarity=0.468 Sum_probs=16.6
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
+..+++.|+||||||||+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~ 22 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGR 22 (173)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4579999999999999865
No 23
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.87 E-value=0.033 Score=54.92 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=18.1
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+++.|+||+|||||..
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk 34 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQ 34 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 578999999999999999754
No 24
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.85 E-value=0.03 Score=53.72 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=18.5
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+.+.|+||+|||||..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~ 40 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSN 40 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 467889999999999999865
No 25
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.75 E-value=0.027 Score=53.97 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=16.2
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.|..++|.|+||+|||||..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~ 22 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLK 22 (198)
T ss_dssp --CCEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999999754
No 26
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.74 E-value=0.028 Score=52.91 Aligned_cols=19 Identities=42% Similarity=0.508 Sum_probs=16.1
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
|+.++|.|+||+|||||..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~ 19 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLK 19 (186)
T ss_dssp CCCEEEESSSSSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4578999999999999754
No 27
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.62 E-value=0.032 Score=54.37 Aligned_cols=21 Identities=33% Similarity=0.340 Sum_probs=18.0
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..++|.|+||+|||||..
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~ 41 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIK 41 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999754
No 28
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.50 E-value=0.038 Score=52.55 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=17.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..+++.|+||||||||+.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 457899999999999999765
No 29
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.46 E-value=0.036 Score=53.73 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=14.3
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..++|.|+||||||||..
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~ 45 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVAN 45 (231)
T ss_dssp ECCCEEEEECSCC----CHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999754
No 30
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.44 E-value=0.035 Score=51.08 Aligned_cols=20 Identities=30% Similarity=0.750 Sum_probs=17.6
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.|..+++.|+||+|||||+.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 46789999999999999865
No 31
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.26 E-value=0.039 Score=52.30 Aligned_cols=21 Identities=33% Similarity=0.260 Sum_probs=17.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+.+.|+||+|||||+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~ 24 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQ 24 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHH
Confidence 456789999999999999865
No 32
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.22 E-value=0.034 Score=51.64 Aligned_cols=20 Identities=40% Similarity=0.662 Sum_probs=17.7
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.|..++|+|++|||||||..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 37889999999999999865
No 33
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.02 E-value=0.051 Score=54.01 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=19.2
Q ss_pred CCCCCEEEEEecCCCCcccccc
Q 005865 361 GKDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 361 g~~G~~alfFGLSGTGKTTLSa 382 (673)
-..|..+++.|+||+|||||..
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~ 49 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLN 49 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHH
Confidence 3678999999999999999754
No 34
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.01 E-value=0.047 Score=51.85 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=17.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..+..+++.|+|||||||++.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHH
Confidence 457789999999999999765
No 35
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.86 E-value=0.051 Score=53.57 Aligned_cols=21 Identities=43% Similarity=0.676 Sum_probs=18.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..+.+.|+||+|||||..
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~ 48 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLY 48 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 578999999999999999754
No 36
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.78 E-value=0.046 Score=50.69 Aligned_cols=21 Identities=48% Similarity=0.621 Sum_probs=17.6
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..++|.|++||||||++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~ 23 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSM 23 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 457789999999999999765
No 37
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.73 E-value=0.051 Score=52.20 Aligned_cols=21 Identities=43% Similarity=0.697 Sum_probs=18.6
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+++.|+||+|||||..
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHH
Confidence 568899999999999999754
No 38
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.72 E-value=0.038 Score=51.62 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=16.2
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
|..+++.|+||+|||||..
T Consensus 2 g~ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4578999999999999754
No 39
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.68 E-value=0.05 Score=49.25 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.+++.|+||+||||++.
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999765
No 40
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.67 E-value=0.054 Score=50.92 Aligned_cols=21 Identities=33% Similarity=0.427 Sum_probs=18.6
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|+++++.|++|+|||||..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr 51 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTR 51 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999754
No 41
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=91.61 E-value=0.049 Score=48.79 Aligned_cols=17 Identities=35% Similarity=0.739 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|++|+||||++.
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999765
No 42
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.56 E-value=0.054 Score=49.86 Aligned_cols=19 Identities=37% Similarity=0.550 Sum_probs=16.6
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
|..++|.|++|+||||++.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4679999999999999765
No 43
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.54 E-value=0.051 Score=51.54 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=18.3
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+++.|+||+|||||..
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 467899999999999999754
No 44
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.53 E-value=0.068 Score=50.35 Aligned_cols=20 Identities=40% Similarity=0.632 Sum_probs=17.7
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.|..++|.|++||||||++.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHH
Confidence 46789999999999999765
No 45
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.48 E-value=0.061 Score=51.04 Aligned_cols=38 Identities=26% Similarity=0.376 Sum_probs=26.3
Q ss_pred CCCCCEEEEEecCCCCccccccc----c-CCceeecCcceecC
Q 005865 361 GKDGDVALFFGLSGTGKTTLSTD----H-NRYLIGDDEHCWSD 398 (673)
Q Consensus 361 g~~G~~alfFGLSGTGKTTLSad----p-~r~lIgDDe~~w~d 398 (673)
.+.|..+++.|.||+|||||+.. . +-.+|..|...|..
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPE 60 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCH
Confidence 35577899999999999997652 1 23456666555543
No 46
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.45 E-value=0.058 Score=49.92 Aligned_cols=19 Identities=42% Similarity=0.508 Sum_probs=16.6
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
+..++|.|++|+||||++.
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5579999999999999765
No 47
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.39 E-value=0.065 Score=54.18 Aligned_cols=21 Identities=43% Similarity=0.707 Sum_probs=18.8
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+.+.|+||+|||||..
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk 50 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLR 50 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 678999999999999999754
No 48
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.38 E-value=0.069 Score=52.43 Aligned_cols=21 Identities=19% Similarity=0.521 Sum_probs=18.3
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|+.++|.|+||+|||||..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~ 37 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKN 37 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHH
Confidence 368899999999999999754
No 49
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.34 E-value=0.059 Score=49.88 Aligned_cols=19 Identities=32% Similarity=0.518 Sum_probs=16.7
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
+..+++.|+|||||||++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5679999999999999765
No 50
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.06 E-value=0.074 Score=52.91 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=18.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+++.|+||+|||||..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~ 49 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLS 49 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 678999999999999999754
No 51
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.91 E-value=0.062 Score=49.74 Aligned_cols=20 Identities=40% Similarity=0.390 Sum_probs=17.1
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.+..++|.|+||+||||++.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHH
Confidence 35679999999999999765
No 52
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.89 E-value=0.08 Score=56.57 Aligned_cols=21 Identities=43% Similarity=0.718 Sum_probs=18.8
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..+.+.|+||||||||..
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr 48 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLR 48 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHH
T ss_pred cCCCEEEEECCCCchHHHHHH
Confidence 678999999999999999754
No 53
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=90.88 E-value=0.064 Score=48.89 Aligned_cols=17 Identities=35% Similarity=0.642 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|++|+||||++.
T Consensus 4 ~I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEecCCCCCHHHHHH
Confidence 58999999999999865
No 54
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=90.66 E-value=0.066 Score=49.21 Aligned_cols=17 Identities=29% Similarity=0.683 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|++|+||||++.
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999765
No 55
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.60 E-value=0.085 Score=53.59 Aligned_cols=21 Identities=38% Similarity=0.781 Sum_probs=18.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+++.|+||+|||||..
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk 68 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLR 68 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEEcCCCCcHHHHHH
Confidence 678999999999999999754
No 56
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.59 E-value=0.094 Score=48.42 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=17.8
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.|..++|+|++|+|||||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57889999999999999865
No 57
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.59 E-value=0.077 Score=53.35 Aligned_cols=21 Identities=48% Similarity=0.831 Sum_probs=18.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+.+.|+||+|||||..
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk 51 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLIN 51 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred eCCCEEEEECCCCCCHHHHHH
Confidence 578999999999999999754
No 58
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.55 E-value=0.09 Score=51.48 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=18.2
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..+.+.|+||+|||||..
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAM 40 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 458899999999999999754
No 59
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.54 E-value=0.078 Score=53.14 Aligned_cols=21 Identities=48% Similarity=0.743 Sum_probs=18.8
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+++.|+||+|||||..
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~ 53 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTK 53 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 678999999999999999754
No 60
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.49 E-value=0.079 Score=52.34 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=18.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+++.|+||+|||||..
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~ 52 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLM 52 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 578999999999999999754
No 61
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.48 E-value=0.089 Score=49.65 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=17.5
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..+..++|.|++|+||||++.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 345679999999999999765
No 62
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.46 E-value=0.08 Score=52.67 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=18.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+++.|+||+|||||..
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~ 50 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLS 50 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 578999999999999999754
No 63
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.45 E-value=0.08 Score=52.99 Aligned_cols=21 Identities=38% Similarity=0.713 Sum_probs=18.8
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..+++.|+||+|||||..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk 47 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGK 47 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 578999999999999999854
No 64
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.40 E-value=0.079 Score=50.55 Aligned_cols=19 Identities=42% Similarity=0.469 Sum_probs=16.7
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
+.++++.|+|||||||++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4579999999999999866
No 65
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.36 E-value=0.082 Score=52.61 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=18.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+++.|+||+|||||..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~ 46 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFS 46 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 678899999999999999754
No 66
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.33 E-value=0.093 Score=53.35 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=18.8
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+++.|+||+|||||..
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk 63 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAA 63 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 678999999999999999754
No 67
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.31 E-value=0.084 Score=54.06 Aligned_cols=21 Identities=43% Similarity=0.678 Sum_probs=18.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+++.|+||+|||||..
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~ 52 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQ 52 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 678999999999999999754
No 68
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.30 E-value=0.083 Score=53.65 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=18.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..+.+.|+||+|||||..
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~ 55 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLR 55 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 578999999999999999754
No 69
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.20 E-value=0.097 Score=52.92 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=18.8
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..+++.|+||+|||||..
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk 59 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLR 59 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 678999999999999999754
No 70
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.14 E-value=0.099 Score=52.77 Aligned_cols=21 Identities=29% Similarity=0.635 Sum_probs=18.8
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+++.|+||+|||||..
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~ 64 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAK 64 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 678999999999999999754
No 71
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.12 E-value=0.099 Score=52.86 Aligned_cols=21 Identities=38% Similarity=0.672 Sum_probs=18.8
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..+++.|+||+|||||..
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~ 51 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQ 51 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 678999999999999999754
No 72
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.12 E-value=0.096 Score=56.38 Aligned_cols=21 Identities=43% Similarity=0.790 Sum_probs=18.8
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+.++|+||||||||..
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr 47 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLR 47 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEEcCCCchHHHHHH
Confidence 678999999999999999754
No 73
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.09 E-value=0.098 Score=55.76 Aligned_cols=21 Identities=48% Similarity=0.681 Sum_probs=18.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+.+.|+||||||||..
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr 47 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLL 47 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEEcCCCchHHHHHH
Confidence 678999999999999999754
No 74
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.08 E-value=0.1 Score=52.92 Aligned_cols=21 Identities=43% Similarity=0.748 Sum_probs=18.8
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..+++.|+||+|||||..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk 64 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSA 64 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 678999999999999999754
No 75
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.04 E-value=0.05 Score=50.61 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=17.2
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.+..++|.|++|+||||++.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35689999999999999765
No 76
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=89.98 E-value=0.11 Score=48.99 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=17.6
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.|..++|.|++||||||++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46789999999999999765
No 77
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.96 E-value=0.1 Score=55.71 Aligned_cols=21 Identities=48% Similarity=0.759 Sum_probs=18.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+.+.|+||||||||..
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr 47 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLY 47 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECCCCchHHHHHH
Confidence 678999999999999999754
No 78
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=89.93 E-value=0.078 Score=50.09 Aligned_cols=19 Identities=26% Similarity=0.594 Sum_probs=16.6
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
...++|.|+||+|||||+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SSCEEEECSTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4579999999999999865
No 79
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=89.91 E-value=0.073 Score=49.18 Aligned_cols=19 Identities=37% Similarity=0.765 Sum_probs=16.6
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
|..++|.|++||||||++.
T Consensus 4 g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp EEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5579999999999999765
No 80
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.89 E-value=0.1 Score=55.84 Aligned_cols=21 Identities=48% Similarity=0.726 Sum_probs=18.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+.+.|+||||||||..
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr 55 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLR 55 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECCCCChHHHHHH
Confidence 678999999999999999754
No 81
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.86 E-value=0.08 Score=52.20 Aligned_cols=21 Identities=48% Similarity=0.729 Sum_probs=18.5
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+++.|+||+|||||..
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk 53 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLK 53 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 578889999999999999754
No 82
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=89.86 E-value=0.091 Score=53.64 Aligned_cols=20 Identities=35% Similarity=0.502 Sum_probs=17.4
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.+..+++.|+||||||||+.
T Consensus 32 ~~~livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46679999999999999865
No 83
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.72 E-value=0.099 Score=53.50 Aligned_cols=21 Identities=48% Similarity=0.824 Sum_probs=18.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..+++.|+||+|||||..
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk 65 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLN 65 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 578999999999999999754
No 84
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.67 E-value=0.11 Score=50.76 Aligned_cols=22 Identities=36% Similarity=0.392 Sum_probs=19.0
Q ss_pred CCCCCEEEEEecCCCCcccccc
Q 005865 361 GKDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 361 g~~G~~alfFGLSGTGKTTLSa 382 (673)
.+.|..+.|.|++|+|||||..
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~ 38 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLN 38 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHH
Confidence 3568889999999999999765
No 85
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=89.67 E-value=0.099 Score=48.74 Aligned_cols=21 Identities=48% Similarity=0.752 Sum_probs=17.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..++|.|++|+||||++.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHH
Confidence 356789999999999999765
No 86
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.62 E-value=0.1 Score=55.64 Aligned_cols=21 Identities=38% Similarity=0.729 Sum_probs=18.6
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+.+.|+||||||||..
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr 59 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILR 59 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHH
Confidence 578899999999999999754
No 87
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=89.58 E-value=0.11 Score=53.75 Aligned_cols=20 Identities=45% Similarity=0.712 Sum_probs=17.9
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.|.+++|.|+||+|||||..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~ 120 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIA 120 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHH
Confidence 57899999999999999765
No 88
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.53 E-value=0.1 Score=52.45 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=18.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+++.|+||+|||||..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~ 49 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLD 49 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 578899999999999999754
No 89
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=89.53 E-value=0.098 Score=48.94 Aligned_cols=19 Identities=37% Similarity=0.691 Sum_probs=16.6
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
|..++|.|++||||||++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 5579999999999999765
No 90
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.48 E-value=0.099 Score=51.39 Aligned_cols=21 Identities=19% Similarity=0.120 Sum_probs=18.5
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+.+.|++|+|||||+.
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k 43 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCE 43 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 567889999999999999865
No 91
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.48 E-value=0.1 Score=55.72 Aligned_cols=21 Identities=48% Similarity=0.749 Sum_probs=18.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+.+.|+||||||||..
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr 47 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLR 47 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHH
Confidence 578999999999999999754
No 92
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.46 E-value=0.1 Score=49.22 Aligned_cols=21 Identities=38% Similarity=0.449 Sum_probs=18.4
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..+++.|++|+|||||..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHH
Confidence 457899999999999999865
No 93
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=89.40 E-value=0.1 Score=54.28 Aligned_cols=22 Identities=18% Similarity=0.040 Sum_probs=19.1
Q ss_pred CCCCCEEEEEecCCCCcccccc
Q 005865 361 GKDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 361 g~~G~~alfFGLSGTGKTTLSa 382 (673)
-+.|..+.+.|+||+|||||..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~ 108 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTAR 108 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHH
Confidence 3568899999999999999765
No 94
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.35 E-value=0.11 Score=52.29 Aligned_cols=21 Identities=33% Similarity=0.675 Sum_probs=18.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..+++.|+||+|||||..
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk 44 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLA 44 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 578899999999999999754
No 95
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.31 E-value=0.11 Score=52.56 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=18.2
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+++.|+||+|||||..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHH
Confidence 567789999999999999754
No 96
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=89.27 E-value=0.12 Score=48.64 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=18.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+++.|++|+|||||..
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHH
Confidence 468899999999999999865
No 97
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.27 E-value=0.12 Score=48.25 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=17.4
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.|..++|.|.+||||||++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 46789999999999999765
No 98
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=89.24 E-value=0.11 Score=49.48 Aligned_cols=21 Identities=43% Similarity=0.362 Sum_probs=18.0
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..+.+.|+||+|||||+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~ 40 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLAN 40 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 356789999999999999765
No 99
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=89.24 E-value=0.12 Score=50.71 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=17.3
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.+..+++.|++|+|||||..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k 45 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQ 45 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35789999999999999764
No 100
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.20 E-value=0.094 Score=55.63 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=18.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+.+.|+||||||||..
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr 44 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLE 44 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHH
T ss_pred cCCCEEEEECCCCccHHHHHH
Confidence 678999999999999999754
No 101
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.10 E-value=0.13 Score=53.63 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=18.8
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..++|.|+||+|||||..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~ 144 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCN 144 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 678999999999999999755
No 102
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=89.06 E-value=0.13 Score=46.29 Aligned_cols=19 Identities=26% Similarity=0.517 Sum_probs=16.4
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
+..++|.|++|||||||..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4569999999999999865
No 103
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.05 E-value=0.14 Score=47.55 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=17.3
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.+..++|.|++||||||++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45689999999999999765
No 104
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=88.94 E-value=0.12 Score=47.55 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=12.5
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
+..++|.|++||||||++.
T Consensus 5 ~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CCEEEEECCC----CHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4579999999999999765
No 105
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.93 E-value=0.14 Score=52.69 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=18.8
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+++.|+||+|||||..
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk 82 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLM 82 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 678999999999999999754
No 106
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=88.89 E-value=0.13 Score=48.20 Aligned_cols=20 Identities=40% Similarity=0.592 Sum_probs=17.4
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.+..+++.|.+||||||++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999999765
No 107
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=88.88 E-value=0.13 Score=48.47 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=17.4
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.+..++|.|++|||||||+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35679999999999999865
No 108
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=88.87 E-value=0.25 Score=47.87 Aligned_cols=44 Identities=34% Similarity=0.505 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHhcccCceeecccccccC-CCCCEEEEEecCCCCcccccc
Q 005865 333 EMKKGLFSLMHYLMPKRQILSLHSGCNMG-KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 333 EmKK~iltl~n~~l~~~G~LpmH~sanvg-~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|+.+..+..++...+-+. ..+ .....++|.|++|||||+|+.
T Consensus 13 ~~~~~l~~~~~~~~~~~~~~------~~g~~~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 13 EAKLEVREFVDYLKSPERFL------QLGAKVPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp HHHHHHHHHHHHHHCCC------------CCCCCEEEEESCTTSSHHHHHH
T ss_pred HHHHHHHHHHHHHHCHHHHH------HcCCCCCceEEEECCCCCCHHHHHH
Confidence 46777766665433222111 111 234569999999999999865
No 109
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=88.87 E-value=0.13 Score=51.12 Aligned_cols=21 Identities=38% Similarity=0.344 Sum_probs=18.5
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|.++.+.|+||||||||+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k 45 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCK 45 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 567899999999999999765
No 110
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.86 E-value=0.12 Score=49.49 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=18.5
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..++|.|+||+|||||..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHH
Confidence 468899999999999999865
No 111
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.80 E-value=0.11 Score=50.15 Aligned_cols=19 Identities=37% Similarity=0.494 Sum_probs=16.6
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
|+.++|.|++|+|||||..
T Consensus 1 G~~i~i~G~nG~GKTTll~ 19 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIH 19 (189)
T ss_dssp CCCEEEESCCSSCHHHHHH
T ss_pred CCEEEEECCCCChHHHHHH
Confidence 5678999999999999765
No 112
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=88.68 E-value=0.12 Score=48.04 Aligned_cols=17 Identities=41% Similarity=0.690 Sum_probs=15.0
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|.+||||||++.
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 47899999999999765
No 113
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=88.61 E-value=0.13 Score=49.28 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=18.2
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..++|.|++|+||||++.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 457789999999999999765
No 114
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.57 E-value=0.14 Score=51.90 Aligned_cols=20 Identities=40% Similarity=0.735 Sum_probs=18.1
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+ |..+++.|+||+|||||..
T Consensus 29 ~-Ge~~~i~G~NGsGKSTLlk 48 (263)
T 2pjz_A 29 N-GEKVIILGPNGSGKTTLLR 48 (263)
T ss_dssp C-SSEEEEECCTTSSHHHHHH
T ss_pred C-CEEEEEECCCCCCHHHHHH
Confidence 5 9999999999999999754
No 115
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=88.56 E-value=0.09 Score=55.80 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=18.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+.+.|+||||||||..
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr 49 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMR 49 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHH
Confidence 678999999999999999754
No 116
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=88.34 E-value=0.12 Score=46.66 Aligned_cols=19 Identities=26% Similarity=0.531 Sum_probs=16.4
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
...++|.|++|||||||+.
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4568999999999999865
No 117
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=88.25 E-value=0.14 Score=48.63 Aligned_cols=17 Identities=41% Similarity=0.546 Sum_probs=14.7
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.+++.|+||+|||||..
T Consensus 2 ~i~l~G~nGsGKTTLl~ 18 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVK 18 (178)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999854
No 118
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=88.22 E-value=0.11 Score=51.42 Aligned_cols=21 Identities=43% Similarity=0.483 Sum_probs=17.8
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.+..+++.|+||+||||++.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~ 50 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHR 50 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHH
Confidence 345689999999999999865
No 119
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=88.18 E-value=0.16 Score=54.40 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=18.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..+.+.|+||+|||||..
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr 72 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIR 72 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEEcCCCchHHHHHH
Confidence 678999999999999999754
No 120
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=88.12 E-value=0.13 Score=49.94 Aligned_cols=18 Identities=44% Similarity=0.529 Sum_probs=15.2
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
+.+++.||||+|||||..
T Consensus 2 RpIVi~GPSG~GK~Tl~~ 19 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLK 19 (186)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 348999999999999754
No 121
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=88.01 E-value=0.14 Score=51.13 Aligned_cols=17 Identities=29% Similarity=0.628 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.+++.|++|||||||+.
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 58999999999999875
No 122
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=87.92 E-value=0.089 Score=49.61 Aligned_cols=17 Identities=35% Similarity=0.550 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|+||+||||++.
T Consensus 2 ~I~i~G~~GsGKsTl~~ 18 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVE 18 (214)
T ss_dssp EEEEEEEEEEEHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 58899999999999865
No 123
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=87.86 E-value=0.14 Score=47.06 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=16.4
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
+..++|.|++||||||++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568999999999999865
No 124
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=87.84 E-value=0.14 Score=47.58 Aligned_cols=17 Identities=35% Similarity=0.579 Sum_probs=14.9
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|++||||||++.
T Consensus 2 ~I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999765
No 125
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=87.83 E-value=0.14 Score=48.76 Aligned_cols=17 Identities=35% Similarity=0.612 Sum_probs=14.9
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|++|+||||++.
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999765
No 126
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=87.82 E-value=0.18 Score=54.24 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.8
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+.+.|+||||||||..
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr 65 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLS 65 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHH
T ss_pred cCCCEEEEECCCCChHHHHHH
Confidence 678999999999999999754
No 127
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=87.79 E-value=0.13 Score=50.22 Aligned_cols=16 Identities=44% Similarity=0.717 Sum_probs=14.8
Q ss_pred EEEEecCCCCcccccc
Q 005865 367 ALFFGLSGTGKTTLST 382 (673)
Q Consensus 367 alfFGLSGTGKTTLSa 382 (673)
++|+|++|||||||..
T Consensus 52 ~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLAR 67 (254)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 9999999999999864
No 128
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=87.75 E-value=0.16 Score=52.12 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=18.2
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..+.+.|+||+|||||+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~ 98 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTAR 98 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 457789999999999999764
No 129
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=87.75 E-value=0.16 Score=52.50 Aligned_cols=46 Identities=26% Similarity=0.362 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHHhcccCc-eeeccccccc-CCCCCEEEEEecCCCCcccccc
Q 005865 333 EMKKGLFSLMHYLMPKRQ-ILSLHSGCNM-GKDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 333 EmKK~iltl~n~~l~~~G-~LpmH~sanv-g~~G~~alfFGLSGTGKTTLSa 382 (673)
++++.+...+..++.... .-++ +. ...|.+++|.|++|+|||||..
T Consensus 71 ~~~~~~~~~l~~~l~~~~~~~~l----~~~~~~g~vi~lvG~nGsGKTTll~ 118 (302)
T 3b9q_A 71 EIKDALKESVLEMLAKKNSKTEL----QLGFRKPAVIMIVGVNGGGKTTSLG 118 (302)
T ss_dssp HHHHHHHHHHHHHHCC--CCCSC----CCCSSSCEEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccccc----ccccCCCcEEEEEcCCCCCHHHHHH
Confidence 466666665554443211 0111 22 2468899999999999999765
No 130
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=87.61 E-value=0.14 Score=47.19 Aligned_cols=17 Identities=41% Similarity=0.800 Sum_probs=15.1
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.+++.|++||||||++.
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 48899999999999765
No 131
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=87.48 E-value=0.14 Score=53.28 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=19.3
Q ss_pred CCCCCEEEEEecCCCCcccccc
Q 005865 361 GKDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 361 g~~G~~alfFGLSGTGKTTLSa 382 (673)
.+.|..+++.|+||+|||||..
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ 98 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILR 98 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHH
T ss_pred EcCCCEEEEECCCCchHHHHHH
Confidence 3678999999999999999754
No 132
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=87.42 E-value=0.15 Score=48.59 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=14.9
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|++||||||++.
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999999765
No 133
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=87.38 E-value=0.19 Score=51.12 Aligned_cols=21 Identities=38% Similarity=0.639 Sum_probs=17.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..+..++|+|++|||||||+.
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHH
Confidence 346679999999999999864
No 134
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=87.29 E-value=0.15 Score=49.99 Aligned_cols=18 Identities=44% Similarity=0.612 Sum_probs=15.7
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..++|.|++|||||||+.
T Consensus 46 ~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 359999999999999864
No 135
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=87.28 E-value=0.17 Score=46.68 Aligned_cols=17 Identities=41% Similarity=0.692 Sum_probs=15.0
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|++||||||++.
T Consensus 2 ~I~l~G~~GsGKsT~~~ 18 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAK 18 (195)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999765
No 136
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=87.23 E-value=0.2 Score=50.11 Aligned_cols=20 Identities=25% Similarity=0.544 Sum_probs=17.2
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+. ..+.+.|+||+|||||..
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~ 42 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLE 42 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHH
T ss_pred CC-EEEEEECCCCCCHHHHHH
Confidence 44 789999999999999754
No 137
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=87.18 E-value=0.18 Score=50.34 Aligned_cols=20 Identities=40% Similarity=0.609 Sum_probs=17.3
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.+..++|+|++|||||||+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHH
Confidence 45679999999999999864
No 138
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=87.14 E-value=0.19 Score=47.27 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=16.2
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..++|+|++|||||||+.
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 679999999999999864
No 139
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=87.13 E-value=0.16 Score=46.28 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|++||||||++.
T Consensus 4 ~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CEEEESCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 58999999999999765
No 140
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.08 E-value=0.19 Score=50.32 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..+++.|++|+|||||..
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~ 48 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLAL 48 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHH
Confidence 578999999999999999865
No 141
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=87.06 E-value=0.17 Score=47.77 Aligned_cols=17 Identities=35% Similarity=0.516 Sum_probs=14.9
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.+.+.|++||||||++.
T Consensus 4 ~i~l~G~~GsGKST~~~ 20 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIAN 20 (206)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999999764
No 142
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=87.04 E-value=0.2 Score=48.05 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=17.1
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.+..++|.|++|+||||++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45679999999999999765
No 143
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=87.04 E-value=0.23 Score=49.54 Aligned_cols=21 Identities=38% Similarity=0.379 Sum_probs=17.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.+..++|+|++|||||+|+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHH
Confidence 345679999999999999874
No 144
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=86.99 E-value=0.21 Score=46.66 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=18.2
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..+++.|++|+|||||..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~ 44 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALN 44 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 457789999999999999864
No 145
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=86.84 E-value=0.21 Score=49.41 Aligned_cols=20 Identities=40% Similarity=0.587 Sum_probs=17.0
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.+..++|.|++|||||||+.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHH
Confidence 34569999999999999865
No 146
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=86.78 E-value=0.22 Score=54.23 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=18.1
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..+.++|+||||||||..
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~ 175 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLG 175 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 357889999999999999854
No 147
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=86.75 E-value=0.18 Score=45.72 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=15.0
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|++||||||++.
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 48899999999999765
No 148
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=86.68 E-value=0.26 Score=46.09 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.+++.|++|+|||||..
T Consensus 31 kv~lvG~~g~GKSTLl~ 47 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLS 47 (191)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 58999999999999854
No 149
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=86.67 E-value=0.2 Score=47.15 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=16.4
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
...++|.|++||||||++.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~ 33 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCE 33 (203)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4579999999999999764
No 150
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=86.51 E-value=0.2 Score=48.14 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=16.1
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
+..++|.|++|+||||++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3469999999999999765
No 151
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=86.41 E-value=0.22 Score=48.00 Aligned_cols=20 Identities=35% Similarity=0.446 Sum_probs=16.6
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.+..++|.|++||||||++.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHH
Confidence 34679999999999999765
No 152
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=86.36 E-value=0.22 Score=47.69 Aligned_cols=21 Identities=43% Similarity=0.597 Sum_probs=18.6
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+++.|++|+|||||+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~ 41 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQ 41 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 468899999999999999855
No 153
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=86.36 E-value=0.21 Score=52.40 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=18.6
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|.+++|.|+||+|||||..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~ 147 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIA 147 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 154
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=86.30 E-value=0.28 Score=44.06 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=19.2
Q ss_pred ccCCCCCEEEEEecCCCCcccccc
Q 005865 359 NMGKDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 359 nvg~~G~~alfFGLSGTGKTTLSa 382 (673)
++.+....++++|++|+|||||..
T Consensus 3 ~~~~~~~~i~v~G~~~~GKssl~~ 26 (178)
T 2lkc_A 3 HMVERPPVVTIMGHVDHGKTTLLD 26 (178)
T ss_dssp TTCCCCCEEEEESCTTTTHHHHHH
T ss_pred CcCCCCCEEEEECCCCCCHHHHHH
Confidence 344556789999999999999854
No 155
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=86.27 E-value=0.18 Score=50.81 Aligned_cols=19 Identities=37% Similarity=0.700 Sum_probs=17.0
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
|..++|.|+|||||||++.
T Consensus 48 g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp TCCEEEECSTTSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 6789999999999999755
No 156
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=86.25 E-value=0.19 Score=46.52 Aligned_cols=17 Identities=41% Similarity=0.794 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.+++.|++||||||++.
T Consensus 4 ~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp SEEEECSTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 48999999999999765
No 157
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=86.09 E-value=0.22 Score=46.84 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=15.1
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.+++.|.+||||||++.
T Consensus 3 ~i~i~G~~GsGKSTl~~ 19 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQ 19 (204)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 58899999999999765
No 158
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=86.01 E-value=0.24 Score=46.17 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=16.8
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
....+++.|.+||||||++.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~ 26 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAA 26 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHH
Confidence 34579999999999999765
No 159
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=85.96 E-value=0.23 Score=45.57 Aligned_cols=18 Identities=33% Similarity=0.571 Sum_probs=15.9
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..++|.|++||||||++.
T Consensus 7 ~~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 469999999999999765
No 160
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=85.84 E-value=0.27 Score=51.96 Aligned_cols=20 Identities=40% Similarity=0.401 Sum_probs=17.7
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.|..+.++|+||+|||||..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~ 89 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLG 89 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57889999999999999854
No 161
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=85.84 E-value=0.24 Score=45.45 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=16.8
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..++|.|.+|+|||||..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~ 22 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLN 22 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 456779999999999999754
No 162
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=85.78 E-value=0.2 Score=49.95 Aligned_cols=16 Identities=44% Similarity=0.717 Sum_probs=14.7
Q ss_pred EEEEecCCCCcccccc
Q 005865 367 ALFFGLSGTGKTTLST 382 (673)
Q Consensus 367 alfFGLSGTGKTTLSa 382 (673)
++|+|++|||||||..
T Consensus 76 vll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLAR 91 (278)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCcChHHHHHH
Confidence 9999999999999864
No 163
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=85.70 E-value=0.21 Score=50.47 Aligned_cols=16 Identities=44% Similarity=0.642 Sum_probs=14.7
Q ss_pred EEEEecCCCCcccccc
Q 005865 367 ALFFGLSGTGKTTLST 382 (673)
Q Consensus 367 alfFGLSGTGKTTLSa 382 (673)
++|+|++|||||||..
T Consensus 47 vlL~Gp~GtGKTtLak 62 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAK 62 (274)
T ss_dssp EEEESSTTSCHHHHHH
T ss_pred EEEECCCCCcHHHHHH
Confidence 9999999999999854
No 164
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=85.68 E-value=0.22 Score=44.99 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=16.7
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.+..++|+|++|||||+++.
T Consensus 23 ~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHH
Confidence 34569999999999999864
No 165
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=85.49 E-value=0.24 Score=48.80 Aligned_cols=20 Identities=35% Similarity=0.436 Sum_probs=17.7
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.|..++|.|++|+||||++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~ 44 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVIN 44 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHH
Confidence 57789999999999999765
No 166
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=85.48 E-value=0.26 Score=50.52 Aligned_cols=19 Identities=42% Similarity=0.700 Sum_probs=16.8
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
+..++|.|++|||||+|+.
T Consensus 70 ~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5689999999999999765
No 167
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=85.43 E-value=0.21 Score=51.60 Aligned_cols=18 Identities=50% Similarity=0.669 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..++|+|++|||||||..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 458999999999999865
No 168
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=85.34 E-value=0.43 Score=53.27 Aligned_cols=45 Identities=29% Similarity=0.293 Sum_probs=28.2
Q ss_pred hhhHHHHHHHHHhcc-cCceeecccccccCCCCCEEEEEecCCCCcccccc
Q 005865 333 EMKKGLFSLMHYLMP-KRQILSLHSGCNMGKDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 333 EmKK~iltl~n~~l~-~~G~LpmH~sanvg~~G~~alfFGLSGTGKTTLSa 382 (673)
.+++.+...+..++. ...-+++ ....|.+++|.|+||+|||||..
T Consensus 266 ~~~~~l~~~l~~~l~~~~~~Isl-----~i~~GeVI~LVGpNGSGKTTLl~ 311 (503)
T 2yhs_A 266 ALYGLLKEEMGEILAKVDEPLNV-----EGKAPFVILMVGVNGVGKTTTIG 311 (503)
T ss_dssp GHHHHHHHHHHHHHHTTBCCCCC-----CSCTTEEEEEECCTTSSHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCcee-----eccCCeEEEEECCCcccHHHHHH
Confidence 456666655544443 2111222 12468899999999999999765
No 169
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=85.19 E-value=0.26 Score=52.52 Aligned_cols=45 Identities=29% Similarity=0.330 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHhcc-cC--ceeecccccccCCCCCEEEEEecCCCCcccccc
Q 005865 333 EMKKGLFSLMHYLMP-KR--QILSLHSGCNMGKDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 333 EmKK~iltl~n~~l~-~~--G~LpmH~sanvg~~G~~alfFGLSGTGKTTLSa 382 (673)
++++.+...+..++. .. .-+.+ ....|.++++.|++|+|||||..
T Consensus 128 ~~~~~l~~~l~~~l~~~~~~~~l~l-----~~~~g~vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 128 EIKDALKESVLEMLAKKNSKTELQL-----GFRKPAVIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp HHHHHHHHHHHHHHCCC---CSCCC-----CSSSSEEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccCCCcce-----ecCCCeEEEEEcCCCChHHHHHH
Confidence 466666655544443 22 11221 12468899999999999999765
No 170
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=85.03 E-value=0.33 Score=48.77 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=19.0
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..+++.|++|+|||||..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~ 53 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVR 53 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHH
Confidence 678999999999999999865
No 171
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=84.90 E-value=0.28 Score=49.73 Aligned_cols=17 Identities=41% Similarity=0.585 Sum_probs=14.8
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
++++.|+||+|||||..
T Consensus 4 ~v~lvG~nGaGKSTLln 20 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVN 20 (270)
T ss_dssp EEEEEESSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999999754
No 172
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=84.90 E-value=0.25 Score=44.70 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=16.2
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
+..++|.|++|||||+++.
T Consensus 27 ~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp SSCEEEEEETTCCHHHHHG
T ss_pred CCcEEEECCCCccHHHHHH
Confidence 3459999999999999865
No 173
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=84.89 E-value=0.26 Score=49.11 Aligned_cols=19 Identities=37% Similarity=0.558 Sum_probs=16.3
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
+..++|.|++|+||||++.
T Consensus 4 ~~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHH
Confidence 3469999999999999765
No 174
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=84.83 E-value=0.27 Score=46.91 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=16.3
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
+..++|.|.+||||||++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~ 22 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVAN 22 (218)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4579999999999999765
No 175
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=84.78 E-value=0.32 Score=44.84 Aligned_cols=16 Identities=25% Similarity=0.625 Sum_probs=14.7
Q ss_pred EEEEEecCCCCccccc
Q 005865 366 VALFFGLSGTGKTTLS 381 (673)
Q Consensus 366 ~alfFGLSGTGKTTLS 381 (673)
..+|.|++|+|||||.
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 8999999999999964
No 176
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=84.77 E-value=0.23 Score=52.33 Aligned_cols=21 Identities=38% Similarity=0.469 Sum_probs=18.1
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+++.|+||+|||||..
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~ 193 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMK 193 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHH
T ss_pred hcCCEEEEECCCCCCHHHHHH
Confidence 457789999999999999754
No 177
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=84.76 E-value=0.28 Score=48.49 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=17.1
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.+..++|+|++|+||||++.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 34579999999999999865
No 178
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=84.59 E-value=0.34 Score=44.93 Aligned_cols=18 Identities=39% Similarity=0.661 Sum_probs=16.0
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..++|.|++|+|||||..
T Consensus 46 ~~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp SEEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 479999999999999865
No 179
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=84.57 E-value=0.27 Score=50.49 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=17.3
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.+..+.+.|.||+|||||+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~ 49 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSI 49 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45679999999999999875
No 180
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=84.57 E-value=0.35 Score=45.49 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=16.3
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
-..++|.|++|+|||||..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~ 30 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLT 30 (218)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3579999999999999754
No 181
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=84.26 E-value=0.27 Score=45.28 Aligned_cols=17 Identities=47% Similarity=0.606 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|++|||||||..
T Consensus 40 ~~ll~G~~G~GKT~l~~ 56 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAI 56 (226)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 39999999999999865
No 182
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=84.25 E-value=0.32 Score=50.08 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=18.4
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|.+++|.|++|+||||++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 457899999999999999765
No 183
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=84.25 E-value=0.33 Score=49.72 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=14.2
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
....+.+.|+|||||||++.
T Consensus 4 ~~~iIgItG~sGSGKSTva~ 23 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKH 23 (290)
T ss_dssp TSCEEEEESCC---CCTHHH
T ss_pred CceEEEEECCCCCCHHHHHH
Confidence 34579999999999999875
No 184
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=84.19 E-value=0.22 Score=56.01 Aligned_cols=21 Identities=48% Similarity=0.814 Sum_probs=18.5
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|.+++|.|+||||||||..
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar 387 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLAR 387 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHH
Confidence 468899999999999999865
No 185
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=84.18 E-value=0.26 Score=48.73 Aligned_cols=18 Identities=33% Similarity=0.403 Sum_probs=15.9
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..++|.|++|||||+|+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 469999999999999865
No 186
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=84.15 E-value=0.29 Score=44.68 Aligned_cols=18 Identities=28% Similarity=0.661 Sum_probs=15.7
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..+++.|.+||||||++.
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 369999999999999765
No 187
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=83.86 E-value=0.3 Score=48.89 Aligned_cols=17 Identities=35% Similarity=0.642 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|+||+||||++.
T Consensus 4 ~I~l~G~~GsGKST~a~ 20 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAR 20 (301)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999765
No 188
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.84 E-value=0.32 Score=49.28 Aligned_cols=21 Identities=33% Similarity=0.673 Sum_probs=17.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..+..++|.|++|||||||..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHH
Confidence 345679999999999999865
No 189
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=83.80 E-value=0.32 Score=49.76 Aligned_cols=19 Identities=37% Similarity=0.611 Sum_probs=16.4
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
...++|+|++|||||+|+.
T Consensus 51 ~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCEEEEECSSSSCHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3569999999999999864
No 190
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=83.69 E-value=0.35 Score=49.46 Aligned_cols=20 Identities=40% Similarity=0.740 Sum_probs=17.7
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.|..++|.|+||+|||||..
T Consensus 168 ~geiv~l~G~sG~GKSTll~ 187 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLN 187 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHH
T ss_pred cCCeEEEECCCCCcHHHHHH
Confidence 47899999999999999754
No 191
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=83.57 E-value=0.31 Score=46.57 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=14.9
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|++|+||||++.
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999999765
No 192
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=83.53 E-value=0.3 Score=51.35 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=18.6
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+.++|++|+|||||..
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~ 149 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAH 149 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 468899999999999999865
No 193
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=83.52 E-value=0.39 Score=53.63 Aligned_cols=21 Identities=33% Similarity=0.653 Sum_probs=18.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|+.+++.|+||+|||||..
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~ 387 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIAS 387 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 678999999999999999754
No 194
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=83.50 E-value=0.29 Score=49.76 Aligned_cols=19 Identities=37% Similarity=0.531 Sum_probs=16.5
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
+..++|+|++|||||||..
T Consensus 37 ~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4569999999999999865
No 195
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=83.46 E-value=0.3 Score=50.69 Aligned_cols=43 Identities=26% Similarity=0.308 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHhcccCceeeccccccc-CCCCCEEEEEecCCCCcccccc
Q 005865 334 MKKGLFSLMHYLMPKRQILSLHSGCNM-GKDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 334 mKK~iltl~n~~l~~~G~LpmH~sanv-g~~G~~alfFGLSGTGKTTLSa 382 (673)
+++.+...+..++.... ++ +. ...+.+++|.|++|+||||++.
T Consensus 79 ~~~~~~~~l~~~l~~~~--~~----~~~~~~~~vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 79 ALESLKEIILEILNFDT--KL----NVPPEPPFVIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp HHHHHHHHHHHHTCSCC--CC----CCCSSSCEEEEEECCTTSSHHHHHH
T ss_pred HHHHHHHHHHHHhCCCC--CC----cccCCCCeEEEEEcCCCChHHHHHH
Confidence 66666666655554322 22 22 2457899999999999999765
No 196
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=83.44 E-value=0.4 Score=53.67 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=19.3
Q ss_pred CCCCCEEEEEecCCCCcccccc
Q 005865 361 GKDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 361 g~~G~~alfFGLSGTGKTTLSa 382 (673)
-+.|+.+++.|+||+|||||..
T Consensus 367 i~~G~~~~ivG~sGsGKSTLl~ 388 (595)
T 2yl4_A 367 IPSGSVTALVGPSGSGKSTVLS 388 (595)
T ss_dssp ECTTCEEEEECCTTSSSTHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 3678999999999999999754
No 197
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=83.35 E-value=0.37 Score=49.47 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=18.2
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|.+++|.|+||+|||||..
T Consensus 163 l~G~i~~l~G~sG~GKSTLln 183 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILS 183 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHH
Confidence 357899999999999999754
No 198
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=83.34 E-value=0.22 Score=47.32 Aligned_cols=18 Identities=44% Similarity=0.473 Sum_probs=15.6
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
.++.|.|.||+|||||..
T Consensus 3 ~~v~IvG~SGsGKSTL~~ 20 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLIT 20 (171)
T ss_dssp CEEEEEESCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 368899999999999765
No 199
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=83.25 E-value=0.25 Score=55.08 Aligned_cols=21 Identities=19% Similarity=0.109 Sum_probs=18.4
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|.+++|.|+|||||||++.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~ 413 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSI 413 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHH
T ss_pred ccceEEEecccCCCCHHHHHH
Confidence 467789999999999999765
No 200
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=83.22 E-value=0.3 Score=48.29 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=16.8
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.+..++|.|++|||||+|+.
T Consensus 49 ~~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 34569999999999999864
No 201
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=83.19 E-value=0.36 Score=51.24 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=18.0
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+++.|+||+|||||..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~ 154 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIA 154 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 457789999999999999754
No 202
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=83.12 E-value=0.36 Score=52.08 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.6
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..++|+|+||+|||||..
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHH
T ss_pred CCCcEEEEEcCCCCChHHHHH
Confidence 458899999999999999865
No 203
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=83.09 E-value=0.35 Score=49.85 Aligned_cols=19 Identities=42% Similarity=0.579 Sum_probs=16.6
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
.+.++|+|++|||||+|+.
T Consensus 45 ~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4679999999999999864
No 204
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=82.96 E-value=0.32 Score=47.17 Aligned_cols=17 Identities=41% Similarity=0.643 Sum_probs=14.9
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|++|+||||++.
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGN 18 (223)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999765
No 205
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=82.88 E-value=0.36 Score=47.78 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=18.0
Q ss_pred CCCCCEEEEEecCCCCccccccc
Q 005865 361 GKDGDVALFFGLSGTGKTTLSTD 383 (673)
Q Consensus 361 g~~G~~alfFGLSGTGKTTLSad 383 (673)
.+.+..++|.|++|+||||++..
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~ 43 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNI 43 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTT
T ss_pred ccCceEEEEECCCCCCHHHHHHH
Confidence 34566799999999999998653
No 206
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=82.86 E-value=0.4 Score=46.05 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=16.2
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
+..++|.|++||||||++.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3569999999999999765
No 207
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=82.85 E-value=0.35 Score=50.50 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=17.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+++.|+||+|||||..
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~ 189 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIK 189 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 346789999999999999754
No 208
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=82.76 E-value=0.4 Score=45.77 Aligned_cols=18 Identities=50% Similarity=0.580 Sum_probs=15.7
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..++|.|.||+|||||..
T Consensus 7 ~~i~i~G~sGsGKTTl~~ 24 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLK 24 (174)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHH
Confidence 468999999999999754
No 209
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=82.74 E-value=0.42 Score=53.40 Aligned_cols=21 Identities=43% Similarity=0.803 Sum_probs=19.0
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|+.+++.|+||+|||||..
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~ 385 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLIN 385 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHH
Confidence 678999999999999999755
No 210
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=82.65 E-value=0.43 Score=46.38 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=17.1
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.+..++|.|++||||||++.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45679999999999999765
No 211
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=82.61 E-value=0.41 Score=51.26 Aligned_cols=21 Identities=38% Similarity=0.415 Sum_probs=18.5
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+++.|++|||||||..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~ 187 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAA 187 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 567899999999999999865
No 212
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=82.60 E-value=0.32 Score=50.86 Aligned_cols=61 Identities=13% Similarity=0.152 Sum_probs=32.0
Q ss_pred cCChHHHHHHHHHHHHHcCCeEEEEccCCCCCcCCCCCccCHHHHHHHHHHHh-cCcccCccceecCCCC
Q 005865 538 MLHPTKYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIH-CGTLLEASYTKTPVFG 606 (673)
Q Consensus 538 p~~p~~yae~L~ekl~~~~v~v~LvNTGw~GG~yg~G~Ri~l~~Tr~li~ail-~G~l~~~~~~~~p~fg 606 (673)
+.+....++.|.+.+++++..+.++.-.- ...| +.....+++.++ .+++++..-+..|+-|
T Consensus 301 ~~~r~~l~~~l~~l~~~~~~~ililde~~------~~~r--~~~~i~~i~~~l~~~~~~~~~~~~~~~~~ 362 (365)
T 1lw7_A 301 QKQRQQFQQLLKKLLDKYKVPYIEIESPS------YLDR--YNQVKAVIEKVLNEEEISELQNTTFPIKG 362 (365)
T ss_dssp CCSHHHHHHHHHHHHHGGGCCCEEEECSS------HHHH--HHHHHHHHHHHTSCCCCSSCCC-------
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEeCCCC------HHHH--HHHHHHHHHHHhcccchhHhhcCccccCC
Confidence 56677888888877888899999986321 0111 333444444433 3455555555555443
No 213
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=82.54 E-value=0.36 Score=48.15 Aligned_cols=18 Identities=44% Similarity=0.733 Sum_probs=15.7
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..++|.|++|||||||+.
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 369999999999999764
No 214
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=82.53 E-value=0.39 Score=48.77 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=15.7
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..++|+|++|||||+|+.
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999999865
No 215
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=82.46 E-value=0.33 Score=50.38 Aligned_cols=20 Identities=35% Similarity=0.557 Sum_probs=16.9
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.+..++|.|++|||||+++.
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 34569999999999999764
No 216
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=82.46 E-value=0.17 Score=49.69 Aligned_cols=17 Identities=47% Similarity=0.645 Sum_probs=15.0
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|++|||||+|+.
T Consensus 46 ~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CCCCBCSSCSSHHHHHH
T ss_pred eEEEECCCCCcHHHHHH
Confidence 38999999999999864
No 217
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=82.42 E-value=0.32 Score=49.39 Aligned_cols=20 Identities=45% Similarity=0.791 Sum_probs=17.1
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.+..++|.|++|||||||..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHH
Confidence 45679999999999999865
No 218
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=82.40 E-value=0.36 Score=50.61 Aligned_cols=18 Identities=28% Similarity=0.230 Sum_probs=15.7
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
.++.+.|+||||||||+.
T Consensus 93 ~iigI~GpsGSGKSTl~~ 110 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSR 110 (321)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 369999999999999764
No 219
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=82.39 E-value=0.42 Score=53.35 Aligned_cols=21 Identities=33% Similarity=0.656 Sum_probs=18.8
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|+.+++.|+||+|||||..
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~ 387 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIAN 387 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 678999999999999999754
No 220
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=82.29 E-value=0.4 Score=45.95 Aligned_cols=18 Identities=39% Similarity=0.458 Sum_probs=15.7
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
.+++|.|.||+|||||..
T Consensus 5 ~~i~i~G~sGsGKTTl~~ 22 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLME 22 (169)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 468999999999999765
No 221
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=82.04 E-value=0.39 Score=48.20 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=16.6
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
.-.+++.|+|||||||++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~ 27 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSR 27 (233)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3579999999999999865
No 222
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=81.95 E-value=0.42 Score=54.24 Aligned_cols=20 Identities=40% Similarity=0.808 Sum_probs=18.4
Q ss_pred CCCCEEEEEecCCCCccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLS 381 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLS 381 (673)
+.|+.+.+.|+||+|||||.
T Consensus 42 ~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 42 PRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp ETTSEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHh
Confidence 57899999999999999994
No 223
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=81.94 E-value=0.4 Score=47.27 Aligned_cols=18 Identities=17% Similarity=0.194 Sum_probs=15.9
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..+++.|.+||||||++.
T Consensus 23 ~iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 469999999999999865
No 224
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=81.85 E-value=0.43 Score=43.94 Aligned_cols=17 Identities=41% Similarity=0.606 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.+++.|+||+|||||..
T Consensus 4 kv~ivG~~gvGKStLl~ 20 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQ 20 (184)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999854
No 225
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=81.84 E-value=0.48 Score=41.42 Aligned_cols=17 Identities=29% Similarity=0.556 Sum_probs=15.0
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++++|.+|+|||||..
T Consensus 5 ~i~v~G~~~~GKssl~~ 21 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTI 21 (166)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48999999999999854
No 226
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=81.81 E-value=0.43 Score=50.60 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=16.3
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
|..+++.|+||+|||||..
T Consensus 123 ~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3479999999999999754
No 227
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=81.81 E-value=0.44 Score=44.50 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=15.1
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.+++.|++|+|||||..
T Consensus 7 kv~lvG~~g~GKSTLl~ 23 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLS 23 (199)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 58999999999999854
No 228
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=81.79 E-value=0.48 Score=50.57 Aligned_cols=20 Identities=40% Similarity=0.783 Sum_probs=17.9
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.|.+++|.|+||+|||||..
T Consensus 214 ~G~~~~lvG~sG~GKSTLln 233 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLN 233 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHH
Confidence 57899999999999999854
No 229
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=81.79 E-value=0.51 Score=52.99 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=19.3
Q ss_pred CCCCCEEEEEecCCCCcccccc
Q 005865 361 GKDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 361 g~~G~~alfFGLSGTGKTTLSa 382 (673)
-+.|+.+++.|+||+|||||..
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~ 399 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVN 399 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHH
Confidence 3678999999999999999754
No 230
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=81.79 E-value=0.41 Score=44.68 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=15.4
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
++.+.|.+||||||++.
T Consensus 4 ~i~i~G~~GsGKst~~~ 20 (208)
T 3ake_A 4 IVTIDGPSASGKSSVAR 20 (208)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78999999999999765
No 231
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=81.70 E-value=0.44 Score=54.12 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=18.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+++.|+||+|||||..
T Consensus 346 ~~Ge~vaIiGpnGsGKSTLl~ 366 (670)
T 3ux8_A 346 PLGTFVAVTGVSGSGKSTLVN 366 (670)
T ss_dssp ETTSEEEEECSTTSSHHHHHT
T ss_pred cCCCEEEEEeeCCCCHHHHHH
Confidence 578999999999999999863
No 232
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=81.58 E-value=0.44 Score=47.47 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=18.4
Q ss_pred CCCCCEEEEEecCCCCcccccc
Q 005865 361 GKDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 361 g~~G~~alfFGLSGTGKTTLSa 382 (673)
+..|..++|.|++|+||||++.
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~ 39 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSH 39 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHH
Confidence 4567789999999999999765
No 233
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=81.51 E-value=0.5 Score=52.65 Aligned_cols=21 Identities=43% Similarity=0.567 Sum_probs=18.8
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|+.+++.|+||+|||||..
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk 65 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVK 65 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 678999999999999999754
No 234
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=81.44 E-value=0.45 Score=52.17 Aligned_cols=21 Identities=43% Similarity=0.509 Sum_probs=18.5
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+++.|+||+|||||..
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr 156 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSR 156 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 478889999999999999754
No 235
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=81.43 E-value=0.48 Score=52.19 Aligned_cols=21 Identities=48% Similarity=0.540 Sum_probs=18.6
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+++.|+||||||||..
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~ 57 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSI 57 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHH
Confidence 468999999999999999754
No 236
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.42 E-value=0.39 Score=49.26 Aligned_cols=16 Identities=50% Similarity=0.821 Sum_probs=14.6
Q ss_pred EEEEecCCCCcccccc
Q 005865 367 ALFFGLSGTGKTTLST 382 (673)
Q Consensus 367 alfFGLSGTGKTTLSa 382 (673)
.+|.|++|||||||..
T Consensus 49 ~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIV 64 (340)
T ss_dssp EEEECSSSSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8999999999999765
No 237
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=81.41 E-value=0.54 Score=47.94 Aligned_cols=17 Identities=41% Similarity=0.505 Sum_probs=15.6
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|++|||||||..
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 79999999999999864
No 238
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=81.26 E-value=0.48 Score=50.80 Aligned_cols=20 Identities=30% Similarity=0.610 Sum_probs=17.4
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
....+++.|+||+||||++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~ 276 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQ 276 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 45689999999999999875
No 239
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=80.98 E-value=0.47 Score=52.75 Aligned_cols=20 Identities=35% Similarity=0.614 Sum_probs=17.6
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.|..++|+|+||||||||..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57789999999999999754
No 240
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=80.94 E-value=0.57 Score=47.93 Aligned_cols=19 Identities=53% Similarity=0.728 Sum_probs=16.7
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
+..++|.|++|||||||..
T Consensus 45 ~~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4579999999999999865
No 241
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=80.94 E-value=0.5 Score=42.72 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.+++.|++|+|||||..
T Consensus 5 ~v~lvG~~gvGKStL~~ 21 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFN 21 (165)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999854
No 242
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=80.47 E-value=0.44 Score=48.38 Aligned_cols=18 Identities=56% Similarity=0.763 Sum_probs=15.6
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..++|.|++|||||+|+.
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 358999999999999865
No 243
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=80.46 E-value=0.29 Score=51.06 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=18.5
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|.+++|.|+||+|||||..
T Consensus 171 ~~G~~~~lvG~sG~GKSTLln 191 (307)
T 1t9h_A 171 FQDKTTVFAGQSGVGKSSLLN 191 (307)
T ss_dssp GTTSEEEEEESHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 358899999999999999855
No 244
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=80.26 E-value=0.58 Score=53.14 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=18.6
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..+.+.|+||+|||||..
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLk 121 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALK 121 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECCCCChHHHHHH
Confidence 579999999999999999643
No 245
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=80.26 E-value=0.53 Score=48.47 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=16.8
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
+..++|+|++|||||+|+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999999865
No 246
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=80.24 E-value=0.55 Score=41.18 Aligned_cols=17 Identities=29% Similarity=0.612 Sum_probs=15.0
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|++|+|||||..
T Consensus 5 ~i~v~G~~~~GKSsli~ 21 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTV 21 (167)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999853
No 247
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=80.14 E-value=0.61 Score=48.66 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=17.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
.....++|+|++|||||+|+.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHH
Confidence 345679999999999999864
No 248
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=80.12 E-value=0.54 Score=46.55 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=17.8
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+..++++++|+.|+||+|++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 456789999999999999765
No 249
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=80.09 E-value=0.59 Score=52.42 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=18.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|+.+.+.|+||+|||||..
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~ 387 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMN 387 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 678999999999999999754
No 250
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=80.02 E-value=0.54 Score=45.80 Aligned_cols=19 Identities=21% Similarity=0.127 Sum_probs=16.4
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
+..++|.|.+|+||||++.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~ 20 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVK 20 (241)
T ss_dssp CEEEEEEECTTSSHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 4568999999999999865
No 251
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=79.99 E-value=0.52 Score=47.71 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=16.0
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..+++.|.+||||||++.
T Consensus 76 ~iI~I~G~~GSGKSTva~ 93 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQ 93 (281)
T ss_dssp EEEEEEECTTSCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 479999999999999765
No 252
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=79.96 E-value=0.58 Score=48.22 Aligned_cols=17 Identities=53% Similarity=0.745 Sum_probs=14.9
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
++++.|.||+|||||..
T Consensus 6 v~~i~G~~GaGKTTll~ 22 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLR 22 (318)
T ss_dssp EEEEEESSSSSCHHHHH
T ss_pred EEEEEecCCCCHHHHHH
Confidence 68999999999999643
No 253
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=79.92 E-value=0.57 Score=41.35 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=15.1
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++++|.+|+|||||..
T Consensus 7 ~i~v~G~~~~GKssl~~ 23 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQ 23 (168)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 48999999999999854
No 254
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=79.85 E-value=0.58 Score=41.14 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=15.1
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.+++.|.+|+|||||..
T Consensus 3 ki~v~G~~~~GKSsli~ 19 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFN 19 (161)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999854
No 255
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=79.85 E-value=0.62 Score=50.93 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=17.6
Q ss_pred CCCCE--EEEEecCCCCcccccc
Q 005865 362 KDGDV--ALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~--alfFGLSGTGKTTLSa 382 (673)
+.|.. +++.|+||+|||||..
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln 60 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMD 60 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHH
T ss_pred cCCCeeEEEEECCCCCCHHHHHH
Confidence 56778 9999999999999754
No 256
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=79.85 E-value=0.51 Score=48.03 Aligned_cols=31 Identities=10% Similarity=0.135 Sum_probs=20.3
Q ss_pred cccccCCCCccCChHHHHHHHHHHHHHcCCe
Q 005865 528 FSACFGAAFIMLHPTKYAAMLAEKMQKHGAT 558 (673)
Q Consensus 528 Fs~cFg~PF~p~~p~~yae~L~ekl~~~~v~ 558 (673)
-|.|.--.|-+..+.+..+.|...+++.|+.
T Consensus 182 ~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (354)
T 1sxj_E 182 KSQCLLIRCPAPSDSEISTILSDVVTNERIQ 212 (354)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCE
T ss_pred HhhceEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 3556556677777777777777766666553
No 257
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=79.85 E-value=0.62 Score=45.30 Aligned_cols=20 Identities=20% Similarity=0.214 Sum_probs=17.4
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.+..+.+.|.+||||||++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~ 34 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAK 34 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46789999999999999765
No 258
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=79.84 E-value=0.58 Score=41.08 Aligned_cols=17 Identities=29% Similarity=0.599 Sum_probs=15.1
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|.+|+|||||..
T Consensus 6 ~i~v~G~~~~GKssl~~ 22 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTL 22 (168)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999854
No 259
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=79.70 E-value=0.56 Score=52.40 Aligned_cols=21 Identities=38% Similarity=0.714 Sum_probs=18.6
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..+.+.|+||+|||||..
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~ 312 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFAR 312 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999754
No 260
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=79.68 E-value=0.59 Score=41.24 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=15.0
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|++|+|||||..
T Consensus 5 ~i~v~G~~~~GKssli~ 21 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVL 21 (170)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48999999999999854
No 261
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=79.65 E-value=0.59 Score=42.57 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=15.7
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..++|.|++|+|||||..
T Consensus 8 ~~i~lvG~~gvGKStL~~ 25 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFN 25 (188)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 369999999999999854
No 262
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=79.56 E-value=0.56 Score=50.67 Aligned_cols=19 Identities=47% Similarity=0.714 Sum_probs=16.3
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
+..++|+|++|||||+|+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 3569999999999999764
No 263
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=79.50 E-value=0.56 Score=44.76 Aligned_cols=26 Identities=15% Similarity=0.103 Sum_probs=20.4
Q ss_pred ChHHHHHHHHHHHHHcCCeEEEEccC
Q 005865 540 HPTKYAAMLAEKMQKHGATGWLVNTG 565 (673)
Q Consensus 540 ~p~~yae~L~ekl~~~~v~v~LvNTG 565 (673)
...+....|....+++++.|++++--
T Consensus 156 ~~~~~~~~L~~~a~~~~i~vi~~~q~ 181 (251)
T 2zts_A 156 KIREVLLKLNTILLEMGVTTILTTEA 181 (251)
T ss_dssp GHHHHHHHHHHHHHHHCCEEEEEECC
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 34556677888889999999999853
No 264
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=79.46 E-value=0.64 Score=41.19 Aligned_cols=17 Identities=35% Similarity=0.698 Sum_probs=15.1
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.+++.|.+|+|||||..
T Consensus 4 ki~~vG~~~~GKSsli~ 20 (166)
T 3q72_A 4 KVLLLGAPGVGKSALAR 20 (166)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999854
No 265
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=79.42 E-value=0.5 Score=46.45 Aligned_cols=19 Identities=32% Similarity=0.552 Sum_probs=16.2
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
+..++|.|++|||||+|+.
T Consensus 29 ~~~vll~G~~GtGKt~la~ 47 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIAS 47 (265)
T ss_dssp CSCEEEECCTTSCHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHH
Confidence 3469999999999999864
No 266
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=79.33 E-value=0.61 Score=41.76 Aligned_cols=17 Identities=41% Similarity=0.622 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++++|++|+|||||..
T Consensus 10 ~i~v~G~~~~GKSsli~ 26 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMH 26 (182)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999854
No 267
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=79.30 E-value=0.61 Score=42.76 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=16.4
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
...++++|++|+|||||..
T Consensus 48 ~~~i~vvG~~g~GKSsll~ 66 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLT 66 (193)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3579999999999999854
No 268
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=79.24 E-value=0.59 Score=46.53 Aligned_cols=20 Identities=40% Similarity=0.597 Sum_probs=14.8
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.|..++|.|++|+||||++.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~ 43 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQ 43 (227)
T ss_dssp CCCEEEEECCC---CHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 57789999999999999765
No 269
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=79.21 E-value=0.62 Score=41.07 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=14.9
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++++|.+|+|||||..
T Consensus 5 ki~v~G~~~~GKssli~ 21 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTV 21 (167)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999754
No 270
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=79.20 E-value=0.58 Score=52.72 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=18.4
Q ss_pred CCCCCEEEEEecCCCCcccccc
Q 005865 361 GKDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 361 g~~G~~alfFGLSGTGKTTLSa 382 (673)
++.+.+++|.|+||+||||++.
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~ 414 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIAR 414 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHH
T ss_pred cccceEEEeecCCCCCHHHHHH
Confidence 3456789999999999999865
No 271
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=79.19 E-value=0.66 Score=41.04 Aligned_cols=17 Identities=41% Similarity=0.561 Sum_probs=15.0
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++++|++|+|||||..
T Consensus 5 ~i~v~G~~~~GKssli~ 21 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLV 21 (170)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 48999999999999854
No 272
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=79.09 E-value=0.67 Score=45.53 Aligned_cols=20 Identities=35% Similarity=0.493 Sum_probs=17.3
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.|.-++|.|++|+||||++.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~ 21 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARN 21 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 36789999999999999765
No 273
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=79.08 E-value=0.52 Score=49.10 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=18.5
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..+.+++|.|++|+||||++.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 457899999999999999765
No 274
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=79.06 E-value=0.51 Score=49.07 Aligned_cols=19 Identities=32% Similarity=0.566 Sum_probs=16.2
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
...++|.|++|||||||+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 3469999999999999764
No 275
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=79.04 E-value=0.63 Score=41.34 Aligned_cols=17 Identities=41% Similarity=0.661 Sum_probs=15.0
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|++|+|||||..
T Consensus 4 ki~ivG~~~~GKSsli~ 20 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAG 20 (169)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48999999999999854
No 276
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=78.97 E-value=0.58 Score=45.87 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=17.3
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.|..++|.|++|+||||++.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~ 24 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRD 24 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHH
Confidence 46679999999999999765
No 277
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.95 E-value=0.56 Score=51.27 Aligned_cols=18 Identities=50% Similarity=0.741 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
+.+||+||+|||||.|+.
T Consensus 216 rGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred CeeEEECcCCCCHHHHHH
Confidence 569999999999999764
No 278
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=78.94 E-value=0.46 Score=48.05 Aligned_cols=16 Identities=50% Similarity=0.711 Sum_probs=14.7
Q ss_pred EEEEecCCCCcccccc
Q 005865 367 ALFFGLSGTGKTTLST 382 (673)
Q Consensus 367 alfFGLSGTGKTTLSa 382 (673)
++|.|++|||||+|+.
T Consensus 48 vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVR 63 (350)
T ss_dssp EEEECCGGGCTTHHHH
T ss_pred EEEECCCCccHHHHHH
Confidence 9999999999999864
No 279
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=78.92 E-value=0.5 Score=47.39 Aligned_cols=19 Identities=47% Similarity=0.662 Sum_probs=16.3
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
...++|.|++|||||||+.
T Consensus 38 ~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCCEEECCTTCCCHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3569999999999999865
No 280
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=78.82 E-value=0.64 Score=41.23 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=15.1
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++++|.+|+|||||..
T Consensus 8 ~i~v~G~~~~GKssli~ 24 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVL 24 (170)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 48999999999999854
No 281
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=78.73 E-value=0.69 Score=41.36 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=15.6
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..++|+|.+|+|||||..
T Consensus 10 ~~i~v~G~~~~GKssli~ 27 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTI 27 (181)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 359999999999999854
No 282
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=78.68 E-value=0.61 Score=49.58 Aligned_cols=21 Identities=38% Similarity=0.692 Sum_probs=17.9
Q ss_pred CCCEEEEEecCCCCccccccc
Q 005865 363 DGDVALFFGLSGTGKTTLSTD 383 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSad 383 (673)
.+..+++.|++|+|||||+..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSID 59 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 456899999999999998763
No 283
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=78.62 E-value=0.66 Score=41.35 Aligned_cols=17 Identities=35% Similarity=0.665 Sum_probs=15.1
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|++|+|||||..
T Consensus 6 ki~i~G~~~vGKSsl~~ 22 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLAS 22 (175)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCccHHHHHH
Confidence 58999999999999854
No 284
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=78.59 E-value=0.71 Score=46.24 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=17.3
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.|..++|.|++|+||||++.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~ 45 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQ 45 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 36679999999999999765
No 285
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=78.57 E-value=0.63 Score=51.95 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=19.5
Q ss_pred cCCCCCEEEEEecCCCCcccccc
Q 005865 360 MGKDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 360 vg~~G~~alfFGLSGTGKTTLSa 382 (673)
+-+.|.++.+.|++|+|||||..
T Consensus 21 ~~~~Gei~gLiGpNGaGKSTLlk 43 (538)
T 3ozx_A 21 TPKNNTILGVLGKNGVGKTTVLK 43 (538)
T ss_dssp CCCTTEEEEEECCTTSSHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHH
Confidence 34678999999999999999654
No 286
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=78.43 E-value=0.55 Score=49.09 Aligned_cols=18 Identities=39% Similarity=0.665 Sum_probs=15.7
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..++|+|++|||||+|+.
T Consensus 85 ~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 459999999999999864
No 287
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=78.37 E-value=0.72 Score=52.29 Aligned_cols=22 Identities=50% Similarity=0.537 Sum_probs=19.1
Q ss_pred CCCCCEEEEEecCCCCcccccc
Q 005865 361 GKDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 361 g~~G~~alfFGLSGTGKTTLSa 382 (673)
-..|..+.+.|+||+|||||..
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlk 135 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVK 135 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHH
T ss_pred CCCCCEEEEECCCCChHHHHHH
Confidence 3678999999999999999754
No 288
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=78.29 E-value=0.72 Score=41.90 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..++++|.+|+|||||..
T Consensus 24 ~~i~v~G~~~~GKSsli~ 41 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLN 41 (195)
T ss_dssp CEEEEEEBTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 469999999999999864
No 289
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=78.22 E-value=0.77 Score=45.36 Aligned_cols=20 Identities=45% Similarity=0.589 Sum_probs=17.7
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.|..++|.|++|+||||++.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~ 23 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCN 23 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 47789999999999999765
No 290
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=78.15 E-value=0.7 Score=40.84 Aligned_cols=17 Identities=41% Similarity=0.563 Sum_probs=14.9
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++++|.+|+|||||..
T Consensus 2 ki~~~G~~~~GKssl~~ 18 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILY 18 (164)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47999999999999854
No 291
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=77.99 E-value=0.71 Score=40.79 Aligned_cols=17 Identities=35% Similarity=0.606 Sum_probs=15.1
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++++|.+|+|||||..
T Consensus 5 ~i~v~G~~~~GKssli~ 21 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVL 21 (172)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999854
No 292
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=77.92 E-value=0.71 Score=41.34 Aligned_cols=17 Identities=29% Similarity=0.602 Sum_probs=15.1
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++++|.+|+|||||..
T Consensus 9 ~i~v~G~~~~GKSsli~ 25 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMN 25 (177)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48999999999999854
No 293
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=77.78 E-value=0.69 Score=50.14 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=16.9
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.|..++|.|++|+|||||..
T Consensus 166 ~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHH
Confidence 45679999999999999754
No 294
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=77.75 E-value=0.87 Score=41.21 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|.+|+|||||..
T Consensus 20 ki~v~G~~~~GKSsl~~ 36 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTI 36 (183)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999854
No 295
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=77.71 E-value=0.74 Score=40.61 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=15.0
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++++|.+|+|||||..
T Consensus 8 ~i~v~G~~~~GKssli~ 24 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVL 24 (170)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48999999999999854
No 296
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=77.61 E-value=0.78 Score=40.92 Aligned_cols=17 Identities=41% Similarity=0.604 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|.+|+|||||..
T Consensus 16 ~i~v~G~~~~GKssli~ 32 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLIT 32 (179)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999854
No 297
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.47 E-value=0.62 Score=47.08 Aligned_cols=16 Identities=50% Similarity=0.804 Sum_probs=14.7
Q ss_pred EEEEecCCCCcccccc
Q 005865 367 ALFFGLSGTGKTTLST 382 (673)
Q Consensus 367 alfFGLSGTGKTTLSa 382 (673)
++|.|++|||||||..
T Consensus 61 ~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTIL 76 (353)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8999999999999864
No 298
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=77.46 E-value=0.75 Score=40.82 Aligned_cols=19 Identities=42% Similarity=0.567 Sum_probs=16.2
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
.-.++++|.+|+|||||..
T Consensus 7 ~~~i~v~G~~~~GKssl~~ 25 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILY 25 (171)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHH
Confidence 3469999999999999854
No 299
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.42 E-value=0.67 Score=50.75 Aligned_cols=18 Identities=44% Similarity=0.711 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
+.+||+|++|||||+|+.
T Consensus 216 rGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 459999999999999764
No 300
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=77.31 E-value=0.69 Score=54.61 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=19.7
Q ss_pred CCCCEEEEEecCCCCccccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLSTD 383 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSad 383 (673)
+.+.-++|.|+||+|||||..|
T Consensus 34 P~~~l~viTGvSGSGKSSLafd 55 (842)
T 2vf7_A 34 PRDALVVFTGVSGSGKSSLAFG 55 (842)
T ss_dssp ESSSEEEEESSTTSSHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 5677899999999999999876
No 301
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=77.30 E-value=0.71 Score=48.46 Aligned_cols=20 Identities=40% Similarity=0.612 Sum_probs=17.3
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
....++|+|++|||||+|+.
T Consensus 147 ~~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 45679999999999999864
No 302
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=77.22 E-value=0.69 Score=44.59 Aligned_cols=18 Identities=39% Similarity=0.381 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..+.+.|.+||||||++.
T Consensus 13 ~iIgltG~~GSGKSTva~ 30 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCE 30 (192)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 469999999999999765
No 303
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=77.22 E-value=0.77 Score=41.46 Aligned_cols=17 Identities=41% Similarity=0.446 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|++|+|||||..
T Consensus 13 ki~v~G~~~~GKSsli~ 29 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLY 29 (195)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999854
No 304
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.17 E-value=0.67 Score=50.56 Aligned_cols=18 Identities=44% Similarity=0.671 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
+.+||+|++|||||+|+.
T Consensus 207 rGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp CEEEEESCTTTTHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 459999999999999764
No 305
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=77.08 E-value=0.68 Score=50.40 Aligned_cols=18 Identities=44% Similarity=0.754 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..++|+|++|||||||+.
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 469999999999999865
No 306
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=76.97 E-value=0.79 Score=40.52 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=15.1
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++++|.+|+|||||..
T Consensus 8 ~i~v~G~~~~GKSsli~ 24 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMW 24 (170)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 48999999999999854
No 307
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=76.84 E-value=0.83 Score=51.88 Aligned_cols=21 Identities=43% Similarity=0.726 Sum_probs=18.2
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..+.+.|+||+|||||..
T Consensus 376 ~~GEiv~iiG~NGsGKSTLlk 396 (608)
T 3j16_B 376 SDSEILVMMGENGTGKTTLIK 396 (608)
T ss_dssp CTTCEEEEESCTTSSHHHHHH
T ss_pred ccceEEEEECCCCCcHHHHHH
Confidence 457899999999999999754
No 308
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=76.84 E-value=0.79 Score=41.85 Aligned_cols=17 Identities=29% Similarity=0.556 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|.+|+|||||..
T Consensus 23 ki~vvG~~~~GKSsli~ 39 (190)
T 3con_A 23 KLVVVGAGGVGKSALTI 39 (190)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999854
No 309
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=76.82 E-value=0.77 Score=48.36 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=18.3
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|+.++++|++|+|||||+.
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal 79 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVAL 79 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHH
Confidence 357899999999999999865
No 310
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=76.82 E-value=0.79 Score=40.95 Aligned_cols=17 Identities=41% Similarity=0.548 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|.+|+|||||..
T Consensus 11 ~i~v~G~~~~GKssl~~ 27 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLL 27 (181)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999854
No 311
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=76.80 E-value=0.75 Score=52.62 Aligned_cols=20 Identities=50% Similarity=0.675 Sum_probs=17.5
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.|..++|.|+|||||||++.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr 70 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSM 70 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHH
Confidence 56789999999999999765
No 312
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=76.74 E-value=0.77 Score=49.60 Aligned_cols=19 Identities=42% Similarity=0.579 Sum_probs=16.5
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
...++|+|++|||||+|+.
T Consensus 167 ~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3579999999999999864
No 313
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=76.70 E-value=0.77 Score=51.13 Aligned_cols=21 Identities=43% Similarity=0.626 Sum_probs=18.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..+.+.|++|+|||||..
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk 330 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVK 330 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999754
No 314
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=76.64 E-value=0.72 Score=48.76 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=16.8
Q ss_pred CCEEEEEecCCCCccccccc
Q 005865 364 GDVALFFGLSGTGKTTLSTD 383 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSad 383 (673)
+..+++.|+||+|||||+..
T Consensus 3 ~~~i~i~GptgsGKt~la~~ 22 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVM 22 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHH
Confidence 34689999999999998763
No 315
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=76.60 E-value=0.81 Score=54.48 Aligned_cols=22 Identities=32% Similarity=0.655 Sum_probs=19.7
Q ss_pred CCCCEEEEEecCCCCccccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLSTD 383 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSad 383 (673)
+.++-++|.|+||+|||+|+.|
T Consensus 22 p~~~l~v~tG~SGSGKSsLafd 43 (916)
T 3pih_A 22 PKNRLVVITGVSGSGKSSLAMD 43 (916)
T ss_dssp ETTSEEEEEESTTSSSHHHHTT
T ss_pred CCCcEEEEECCCCCcHHHHHHH
Confidence 5677899999999999999886
No 316
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=76.60 E-value=0.79 Score=47.19 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=18.6
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..++++|++|+|||||+.
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~ 125 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCH 125 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHH
T ss_pred CCCcEEEEECCCCCCHhHHHH
Confidence 467899999999999999865
No 317
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=76.52 E-value=0.67 Score=51.99 Aligned_cols=19 Identities=37% Similarity=0.564 Sum_probs=16.6
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
|..++|+|+||||||||..
T Consensus 60 g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp TCCEEEECCTTSSHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHH
Confidence 4579999999999999764
No 318
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=76.50 E-value=0.86 Score=41.28 Aligned_cols=17 Identities=41% Similarity=0.546 Sum_probs=15.0
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.+++.|.+|+|||||..
T Consensus 3 ki~v~G~~~~GKSsli~ 19 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIY 19 (190)
T ss_dssp EEEEEEBTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48999999999999854
No 319
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=76.48 E-value=0.49 Score=48.10 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=16.2
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
|..++|.|++|||||+|+.
T Consensus 46 ~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp TCCEEEESCCCHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3469999999999999764
No 320
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=76.45 E-value=0.83 Score=41.05 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=15.6
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..++|+|.+|+|||||..
T Consensus 19 ~ki~v~G~~~~GKSsli~ 36 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTL 36 (187)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 359999999999999854
No 321
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=76.37 E-value=0.83 Score=41.23 Aligned_cols=17 Identities=29% Similarity=0.558 Sum_probs=15.1
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|.+|+|||||..
T Consensus 6 ki~v~G~~~~GKSsli~ 22 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTI 22 (189)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999854
No 322
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=76.37 E-value=0.77 Score=51.01 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=16.9
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.|..++|.|++|+|||||..
T Consensus 259 ~g~~i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLN 278 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45669999999999999754
No 323
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=76.29 E-value=0.86 Score=41.13 Aligned_cols=20 Identities=40% Similarity=0.531 Sum_probs=16.8
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
....+++.|++|+|||||..
T Consensus 17 ~~~~i~v~G~~~~GKssli~ 36 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILY 36 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHH
Confidence 34579999999999999864
No 324
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=76.28 E-value=0.76 Score=44.85 Aligned_cols=17 Identities=35% Similarity=0.694 Sum_probs=14.9
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|+.|+||+|++.
T Consensus 2 ~Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999765
No 325
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=76.27 E-value=0.83 Score=42.31 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|++|+|||||..
T Consensus 22 ki~ivG~~~vGKSsL~~ 38 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVH 38 (184)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999864
No 326
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=76.25 E-value=0.81 Score=54.93 Aligned_cols=22 Identities=41% Similarity=0.724 Sum_probs=19.7
Q ss_pred CCCCEEEEEecCCCCccccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLSTD 383 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSad 383 (673)
+.++-++|.|+||+|||+|+.|
T Consensus 44 P~~~lvv~tG~SGSGKSSLafd 65 (993)
T 2ygr_A 44 PRDALIVFTGLSGSGKSSLAFD 65 (993)
T ss_dssp ESSSEEEEEESTTSSHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHH
Confidence 5677899999999999999886
No 327
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=76.11 E-value=0.73 Score=49.03 Aligned_cols=20 Identities=40% Similarity=0.669 Sum_probs=17.6
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.|..++++|++|+|||||+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal 79 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLAL 79 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46789999999999999865
No 328
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=76.08 E-value=0.85 Score=50.19 Aligned_cols=21 Identities=38% Similarity=0.494 Sum_probs=18.5
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|.++++.|++|+|||||..
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~ 299 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVS 299 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHH
Confidence 467899999999999999865
No 329
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=76.05 E-value=0.9 Score=41.56 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=16.3
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
--.++++|.+|+|||||..
T Consensus 23 ~~~i~v~G~~~~GKSsli~ 41 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFIN 41 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3569999999999999854
No 330
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=75.96 E-value=0.84 Score=54.65 Aligned_cols=22 Identities=41% Similarity=0.773 Sum_probs=19.7
Q ss_pred CCCCEEEEEecCCCCccccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLSTD 383 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSad 383 (673)
+.++-++|.|+||+|||||+.|
T Consensus 42 P~~~lvv~tG~SGSGKSSLafd 63 (972)
T 2r6f_A 42 PRGKLVVLTGLSGSGKSSLAFD 63 (972)
T ss_dssp ETTSEEEEEESTTSSHHHHHTT
T ss_pred cCCcEEEEECCCCCCHHHHHHH
Confidence 5677899999999999999886
No 331
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=75.85 E-value=0.88 Score=40.84 Aligned_cols=17 Identities=41% Similarity=0.558 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|.+|+|||||..
T Consensus 12 ~i~v~G~~~~GKssli~ 28 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLV 28 (180)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999854
No 332
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=75.85 E-value=0.87 Score=41.92 Aligned_cols=17 Identities=29% Similarity=0.599 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|.+|+|||||..
T Consensus 16 ki~v~G~~~~GKSsli~ 32 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTL 32 (206)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999854
No 333
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=75.83 E-value=0.78 Score=47.85 Aligned_cols=21 Identities=38% Similarity=0.385 Sum_probs=18.6
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..++++|++|+|||||+.
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~ 140 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSH 140 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 567899999999999999865
No 334
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.78 E-value=0.71 Score=50.18 Aligned_cols=18 Identities=39% Similarity=0.684 Sum_probs=15.5
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
+.+||+|++|||||.|+.
T Consensus 183 rGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp CCEEEESCSSSSHHHHHH
T ss_pred CceEEeCCCCCCHHHHHH
Confidence 349999999999999864
No 335
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=75.74 E-value=0.99 Score=40.84 Aligned_cols=17 Identities=41% Similarity=0.487 Sum_probs=9.4
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|++|+|||||..
T Consensus 10 ki~v~G~~~~GKssl~~ 26 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLF 26 (183)
T ss_dssp EEEEECCCCC-------
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999854
No 336
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=75.74 E-value=0.89 Score=40.73 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|++|+|||||..
T Consensus 8 ki~v~G~~~~GKssl~~ 24 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTT 24 (178)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999854
No 337
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=75.69 E-value=0.9 Score=40.91 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=15.1
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.+++.|.+|+|||||..
T Consensus 7 ~i~~~G~~~~GKssl~~ 23 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLI 23 (186)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999863
No 338
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=75.68 E-value=0.78 Score=48.32 Aligned_cols=18 Identities=28% Similarity=0.517 Sum_probs=16.0
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..+++.|++|+|||||+.
T Consensus 6 ~~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 468999999999999875
No 339
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=75.54 E-value=0.86 Score=51.66 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=18.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..+.+.|++|+|||||..
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk 400 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVK 400 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 578999999999999999754
No 340
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=75.51 E-value=0.9 Score=40.81 Aligned_cols=17 Identities=29% Similarity=0.515 Sum_probs=15.1
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++++|.+|+|||||..
T Consensus 14 ki~v~G~~~~GKSsli~ 30 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVL 30 (181)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999854
No 341
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=75.49 E-value=0.96 Score=40.84 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=15.1
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|.+|+|||||..
T Consensus 8 ki~~~G~~~~GKSsli~ 24 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTI 24 (181)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999854
No 342
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=75.44 E-value=0.92 Score=40.45 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|.+|+|||||..
T Consensus 17 ~i~v~G~~~~GKSsli~ 33 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLH 33 (179)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999754
No 343
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=75.29 E-value=0.95 Score=50.14 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=21.4
Q ss_pred CCCccCHHHHHHHHHHHhcCcccC
Q 005865 573 SGNRIKLAFTRRIIDAIHCGTLLE 596 (673)
Q Consensus 573 ~G~Ri~l~~Tr~li~ail~G~l~~ 596 (673)
.|+..+++.|...+..|++|+++.
T Consensus 424 ~~~~~~~~~t~~~l~~i~~~~~~~ 447 (473)
T 1sky_E 424 PGSYVPVKETVRGFKEILEGKYDH 447 (473)
T ss_dssp CCCCCCHHHHHHHHHHHHTTTTTT
T ss_pred CCccCCHHHHHHHHHHHhcccccC
Confidence 467899999999999999998865
No 344
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=75.28 E-value=0.98 Score=41.52 Aligned_cols=19 Identities=42% Similarity=0.534 Sum_probs=16.2
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
.-.+++.|++|+|||||..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~ 34 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLK 34 (181)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3469999999999999854
No 345
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=75.27 E-value=0.98 Score=40.86 Aligned_cols=17 Identities=41% Similarity=0.536 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|.+|+|||||..
T Consensus 12 ki~v~G~~~~GKSsli~ 28 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLH 28 (186)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999864
No 346
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=75.15 E-value=0.91 Score=47.39 Aligned_cols=21 Identities=24% Similarity=0.223 Sum_probs=18.2
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..+.+.|.+|+|||||..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~ 73 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTID 73 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 467889999999999999754
No 347
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=75.08 E-value=0.77 Score=49.59 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=16.5
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
+..++|+|++|||||||..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4569999999999999865
No 348
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=75.04 E-value=0.93 Score=41.61 Aligned_cols=17 Identities=41% Similarity=0.628 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|.+|+|||||..
T Consensus 27 ki~v~G~~~~GKSsLi~ 43 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLS 43 (193)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999854
No 349
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=74.79 E-value=0.97 Score=40.99 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=14.8
Q ss_pred EEEEEecCCCCccccc
Q 005865 366 VALFFGLSGTGKTTLS 381 (673)
Q Consensus 366 ~alfFGLSGTGKTTLS 381 (673)
.++|.|++|+|||||.
T Consensus 16 ki~vvG~~~~GKssL~ 31 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNL 31 (198)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5999999999999985
No 350
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=74.60 E-value=0.98 Score=41.35 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=15.9
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..++|+|.+|+|||||..
T Consensus 18 ~ki~v~G~~~~GKSsl~~ 35 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIIN 35 (199)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 469999999999999865
No 351
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=74.59 E-value=0.87 Score=48.31 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=16.1
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..+++.|+||+|||||+.
T Consensus 8 ~lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCcCcHHHHHH
Confidence 479999999999999875
No 352
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=74.55 E-value=1.3 Score=49.26 Aligned_cols=18 Identities=39% Similarity=0.610 Sum_probs=15.9
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..+++.|++|+||||++.
T Consensus 36 ~lIvlvGlpGSGKSTia~ 53 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISK 53 (520)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 469999999999999765
No 353
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=74.54 E-value=0.93 Score=46.46 Aligned_cols=17 Identities=41% Similarity=0.581 Sum_probs=14.8
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.+++.|+||+|||||..
T Consensus 20 ~I~lvG~nG~GKSTLl~ 36 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLIN 36 (301)
T ss_dssp EEEEEEETTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47999999999999754
No 354
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=74.42 E-value=1 Score=40.52 Aligned_cols=18 Identities=28% Similarity=0.211 Sum_probs=15.7
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
-.+++.|.+|+|||||..
T Consensus 9 ~ki~v~G~~~~GKssl~~ 26 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLI 26 (182)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 469999999999999854
No 355
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=74.39 E-value=0.87 Score=46.46 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=18.4
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..++++|.+|+|||||+.
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~ 116 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMH 116 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHH
Confidence 457889999999999999865
No 356
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=74.31 E-value=0.98 Score=42.32 Aligned_cols=18 Identities=44% Similarity=0.676 Sum_probs=15.6
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..+++.|++|+|||||..
T Consensus 26 ~ki~lvG~~~vGKSsLi~ 43 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLH 43 (198)
T ss_dssp EEEEEEEETTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 368999999999999754
No 357
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=74.30 E-value=0.85 Score=53.25 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=17.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..+..++|.|+||||||||+.
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLar 256 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHH
Confidence 456789999999999999764
No 358
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=74.20 E-value=0.84 Score=45.36 Aligned_cols=17 Identities=47% Similarity=0.593 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|++||||||++.
T Consensus 48 ~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 49999999999999865
No 359
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=73.98 E-value=1 Score=42.15 Aligned_cols=17 Identities=41% Similarity=0.661 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|++|+|||||..
T Consensus 25 ki~vvG~~~vGKSsLi~ 41 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAG 41 (195)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999854
No 360
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=73.92 E-value=1.1 Score=41.03 Aligned_cols=17 Identities=41% Similarity=0.528 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|.+|+|||||..
T Consensus 18 ki~v~G~~~~GKSsli~ 34 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLL 34 (196)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999854
No 361
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=73.91 E-value=1 Score=41.21 Aligned_cols=18 Identities=33% Similarity=0.325 Sum_probs=15.6
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
-.++|+|.+|+|||||..
T Consensus 21 ~ki~v~G~~~~GKSsli~ 38 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTY 38 (189)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 359999999999999854
No 362
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=73.91 E-value=1.1 Score=41.09 Aligned_cols=18 Identities=39% Similarity=0.551 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
-.++|+|.+|+|||||..
T Consensus 22 ~ki~v~G~~~~GKSsli~ 39 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIIN 39 (190)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 469999999999999854
No 363
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=73.84 E-value=1 Score=43.55 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|.+|+|||||..
T Consensus 31 ~i~lvG~~g~GKStlin 47 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGN 47 (239)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999854
No 364
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=73.81 E-value=0.87 Score=45.08 Aligned_cols=16 Identities=50% Similarity=0.686 Sum_probs=14.7
Q ss_pred EEEEecCCCCcccccc
Q 005865 367 ALFFGLSGTGKTTLST 382 (673)
Q Consensus 367 alfFGLSGTGKTTLSa 382 (673)
++|.|++||||||+..
T Consensus 41 ~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 41 LLFSGPPGTGKTATAI 56 (319)
T ss_dssp EEEESSSSSSHHHHHH
T ss_pred EEEECcCCcCHHHHHH
Confidence 8999999999999764
No 365
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=73.78 E-value=1.1 Score=40.92 Aligned_cols=17 Identities=35% Similarity=0.341 Sum_probs=15.1
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|++|+|||||..
T Consensus 9 ki~v~G~~~vGKSsli~ 25 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLH 25 (184)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48999999999999854
No 366
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=73.67 E-value=1.1 Score=41.16 Aligned_cols=17 Identities=35% Similarity=0.409 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|.+|+|||||..
T Consensus 25 ki~v~G~~~~GKSsli~ 41 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLF 41 (191)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 49999999999999854
No 367
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=73.60 E-value=1.1 Score=40.55 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|.+|+|||||..
T Consensus 9 ki~v~G~~~~GKSsli~ 25 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVL 25 (208)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999854
No 368
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=73.53 E-value=1.1 Score=49.81 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=16.2
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..+.+.|+||+|||||..
T Consensus 30 e~~~liG~nGsGKSTLl~ 47 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMA 47 (483)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 889999999999999743
No 369
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=73.17 E-value=1.3 Score=41.03 Aligned_cols=17 Identities=41% Similarity=0.528 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|.+|+|||||..
T Consensus 35 ki~vvG~~~~GKSsli~ 51 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLL 51 (199)
T ss_dssp EEEEECCTTSCCTTTTT
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999864
No 370
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=73.11 E-value=1 Score=47.42 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=17.0
Q ss_pred CCEEEEEecCCCCccccccc
Q 005865 364 GDVALFFGLSGTGKTTLSTD 383 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSad 383 (673)
...+++.|+||+|||||+..
T Consensus 10 ~~~i~i~GptgsGKt~la~~ 29 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIE 29 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHH
Confidence 35789999999999998763
No 371
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=73.08 E-value=1.2 Score=43.20 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=17.1
Q ss_pred CCCCEEEEEecCCCCccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLS 381 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLS 381 (673)
..|+.+++.|++||||||+.
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQV 93 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHH
T ss_pred hcCCEEEEEeCCCCCcHHhH
Confidence 45788999999999999953
No 372
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=73.07 E-value=1.1 Score=41.33 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|++|+|||||..
T Consensus 23 ki~vvG~~~vGKTsLi~ 39 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTV 39 (187)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 59999999999999854
No 373
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=72.96 E-value=1.2 Score=40.73 Aligned_cols=18 Identities=33% Similarity=0.577 Sum_probs=15.6
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
-.++|+|.+|+|||||..
T Consensus 9 ~ki~vvG~~~~GKSsli~ 26 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVL 26 (199)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 469999999999999854
No 374
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=72.84 E-value=1.2 Score=40.60 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=16.7
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
..-.++++|++|+|||||..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~ 36 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILK 36 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHH
Confidence 34569999999999999854
No 375
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=72.81 E-value=1.2 Score=40.92 Aligned_cols=17 Identities=35% Similarity=0.428 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|.+|+|||||..
T Consensus 24 ki~vvG~~~~GKSsli~ 40 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLF 40 (189)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999854
No 376
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=72.75 E-value=1.2 Score=42.10 Aligned_cols=18 Identities=39% Similarity=0.451 Sum_probs=15.6
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
.+++|.|.+|+|||||..
T Consensus 39 ~~i~ivG~~gvGKTtl~~ 56 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIE 56 (226)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHH
Confidence 468999999999999764
No 377
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.69 E-value=1 Score=49.42 Aligned_cols=18 Identities=39% Similarity=0.709 Sum_probs=15.9
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
+.+||+|++|||||.|+.
T Consensus 217 rGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp SEEEEESSTTTTHHHHHH
T ss_pred CCCceECCCCchHHHHHH
Confidence 569999999999999764
No 378
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=72.53 E-value=1.2 Score=41.92 Aligned_cols=18 Identities=33% Similarity=0.403 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
.+++|.|.+|+|||||..
T Consensus 31 ~~i~i~G~~g~GKTTl~~ 48 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIE 48 (221)
T ss_dssp EEEEEEECTTSCHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHH
Confidence 469999999999999754
No 379
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=72.51 E-value=1.3 Score=45.11 Aligned_cols=18 Identities=39% Similarity=0.661 Sum_probs=15.7
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..++|.|++|||||||..
T Consensus 39 ~~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp SEEEEESCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999999764
No 380
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=72.42 E-value=0.84 Score=49.87 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=17.6
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.+.+++|.|++|+||||+++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~ 115 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAG 115 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46789999999999999765
No 381
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=72.41 E-value=1.2 Score=41.69 Aligned_cols=18 Identities=44% Similarity=0.658 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..+++.|++|+|||||..
T Consensus 8 ~ki~vvG~~~~GKTsli~ 25 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFV 25 (214)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 469999999999999864
No 382
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=72.38 E-value=1.3 Score=41.21 Aligned_cols=17 Identities=29% Similarity=0.604 Sum_probs=15.3
Q ss_pred CEEEEEecCCCCccccc
Q 005865 365 DVALFFGLSGTGKTTLS 381 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLS 381 (673)
-.++|.|++|+|||||.
T Consensus 21 ~ki~~vG~~~vGKTsLi 37 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQ 37 (196)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46999999999999984
No 383
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=72.34 E-value=1.2 Score=40.67 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
-.++++|.+|+|||||..
T Consensus 22 ~~i~v~G~~~~GKSsli~ 39 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILY 39 (181)
T ss_dssp EEEEEEEETTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 469999999999999854
No 384
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=72.33 E-value=1.3 Score=40.56 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=16.3
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
.-.+++.|++|+|||||..
T Consensus 16 ~~~i~v~G~~~~GKssl~~ 34 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILY 34 (187)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHH
Confidence 3469999999999999864
No 385
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=72.20 E-value=1.3 Score=41.14 Aligned_cols=20 Identities=45% Similarity=0.630 Sum_probs=15.9
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
....+++.|++|+|||||..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~ 41 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLH 41 (190)
T ss_dssp --CEEEEEESTTSSHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHH
Confidence 34579999999999999754
No 386
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=72.18 E-value=1.3 Score=48.04 Aligned_cols=18 Identities=22% Similarity=0.326 Sum_probs=15.6
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
-.++|.|+||+|||||..
T Consensus 70 ~~valvG~nGaGKSTLln 87 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFIN 87 (413)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 379999999999999754
No 387
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=72.17 E-value=1.3 Score=40.92 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|.+|+|||||..
T Consensus 25 ki~vvG~~~~GKSsli~ 41 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVC 41 (192)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999854
No 388
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.13 E-value=0.93 Score=50.17 Aligned_cols=19 Identities=37% Similarity=0.529 Sum_probs=16.2
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
-+.+||+|++|||||+|+.
T Consensus 243 prGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp CSEEEECSCTTSSHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHH
Confidence 3569999999999999764
No 389
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=72.10 E-value=0.98 Score=46.28 Aligned_cols=20 Identities=40% Similarity=0.705 Sum_probs=17.8
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.|.+++|.|.+|+||||++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~ 116 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAA 116 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 67889999999999999765
No 390
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=72.09 E-value=1.2 Score=41.13 Aligned_cols=17 Identities=35% Similarity=0.417 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|.+|+|||||..
T Consensus 10 ki~v~G~~~~GKSsli~ 26 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLF 26 (203)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999854
No 391
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=72.02 E-value=1 Score=50.03 Aligned_cols=16 Identities=44% Similarity=0.717 Sum_probs=14.7
Q ss_pred EEEEecCCCCcccccc
Q 005865 367 ALFFGLSGTGKTTLST 382 (673)
Q Consensus 367 alfFGLSGTGKTTLSa 382 (673)
++|+|++|||||||..
T Consensus 67 vLL~GppGtGKTtLar 82 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLAR 82 (499)
T ss_dssp EEEECSSSSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 9999999999999864
No 392
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=71.88 E-value=1.2 Score=40.91 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|++|+|||||..
T Consensus 23 ki~v~G~~~~GKSsli~ 39 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLL 39 (191)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999864
No 393
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=71.88 E-value=1.3 Score=41.16 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=15.6
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
-.++|+|.+|+|||||..
T Consensus 25 ~ki~vvG~~~~GKSsli~ 42 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAH 42 (201)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred EEEEEECCCCcCHHHHHH
Confidence 359999999999999854
No 394
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=71.83 E-value=1 Score=40.59 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|++|+|||||..
T Consensus 9 ki~~vG~~~vGKTsli~ 25 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIH 25 (178)
T ss_dssp EEEEECCGGGCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999854
No 395
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=71.72 E-value=1.3 Score=40.97 Aligned_cols=17 Identities=41% Similarity=0.638 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|.+|+|||||..
T Consensus 10 ki~v~G~~~~GKSsli~ 26 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMN 26 (207)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999854
No 396
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=71.69 E-value=1.1 Score=47.00 Aligned_cols=22 Identities=9% Similarity=0.083 Sum_probs=18.3
Q ss_pred CCCCCEEEEEecCCCCcccccc
Q 005865 361 GKDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 361 g~~G~~alfFGLSGTGKTTLSa 382 (673)
+..+..+++.|++|||||++..
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~ 63 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVN 63 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 3456789999999999999754
No 397
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=71.66 E-value=1.3 Score=40.81 Aligned_cols=17 Identities=29% Similarity=0.304 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|.+|+|||||..
T Consensus 25 ki~~vG~~~~GKSsl~~ 41 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLL 41 (194)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999854
No 398
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=71.65 E-value=1.3 Score=41.07 Aligned_cols=17 Identities=41% Similarity=0.548 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|.+|+|||||..
T Consensus 10 ki~v~G~~~~GKSsli~ 26 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLL 26 (206)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999854
No 399
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=71.60 E-value=1.1 Score=44.50 Aligned_cols=16 Identities=38% Similarity=0.574 Sum_probs=14.8
Q ss_pred EEEEecCCCCcccccc
Q 005865 367 ALFFGLSGTGKTTLST 382 (673)
Q Consensus 367 alfFGLSGTGKTTLSa 382 (673)
++|.|++|+||||++.
T Consensus 45 ~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVH 60 (323)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECcCCCCHHHHHH
Confidence 9999999999999865
No 400
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=71.57 E-value=1.3 Score=48.79 Aligned_cols=19 Identities=37% Similarity=0.590 Sum_probs=16.4
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
...++|+|+||||||+|+.
T Consensus 238 ~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHH
Confidence 4569999999999999864
No 401
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=71.48 E-value=1.3 Score=41.00 Aligned_cols=17 Identities=35% Similarity=0.601 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|.+|+|||||..
T Consensus 28 ki~vvG~~~~GKSsLi~ 44 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLME 44 (192)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999999854
No 402
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=71.47 E-value=1.3 Score=48.39 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=17.9
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.|..+++||+||+|||||..
T Consensus 173 rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHH
Confidence 46789999999999999875
No 403
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=71.45 E-value=1.3 Score=40.94 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=15.7
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
-.++++|.+|+|||||..
T Consensus 29 ~ki~v~G~~~vGKSsli~ 46 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVV 46 (196)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 469999999999999854
No 404
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=71.44 E-value=1.1 Score=49.57 Aligned_cols=17 Identities=47% Similarity=0.622 Sum_probs=15.1
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|++|||||||..
T Consensus 51 gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLAR 67 (476)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 49999999999999864
No 405
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=71.40 E-value=1.1 Score=47.57 Aligned_cols=20 Identities=25% Similarity=0.410 Sum_probs=17.3
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.|..++|+|++|||||||+.
T Consensus 122 ~gsviLI~GpPGsGKTtLAl 141 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVH 141 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 45678999999999999876
No 406
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=71.40 E-value=1.3 Score=40.24 Aligned_cols=17 Identities=41% Similarity=0.579 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|++|+|||||..
T Consensus 17 ~i~v~G~~~~GKssli~ 33 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLL 33 (195)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999754
No 407
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=71.34 E-value=1.1 Score=45.77 Aligned_cols=19 Identities=37% Similarity=0.524 Sum_probs=16.2
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
+..++|.|++|||||+++.
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr 43 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVAR 43 (304)
T ss_dssp TSCEEEESCTTSCHHHHHH
T ss_pred CCcEEEECCCCchHHHHHH
Confidence 4569999999999999764
No 408
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=71.34 E-value=1 Score=41.42 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=4.4
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|.+|+|||||..
T Consensus 22 ~i~v~G~~~~GKssli~ 38 (208)
T 2yc2_C 22 KVAVVGEATVGKSALIS 38 (208)
T ss_dssp EEEEC------------
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999854
No 409
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=71.30 E-value=1.4 Score=41.18 Aligned_cols=17 Identities=41% Similarity=0.554 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|.+|+|||||..
T Consensus 27 ki~v~G~~~~GKSsLi~ 43 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLH 43 (200)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999864
No 410
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=71.14 E-value=1.4 Score=41.73 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|++|+|||||..
T Consensus 28 ki~lvG~~~vGKSsLi~ 44 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVR 44 (201)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999854
No 411
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=70.98 E-value=1.4 Score=48.34 Aligned_cols=19 Identities=37% Similarity=0.562 Sum_probs=16.6
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
...++|.|++|||||||+.
T Consensus 77 ~~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3679999999999999865
No 412
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=70.92 E-value=1.2 Score=47.31 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=17.2
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.| .++++|++|+|||||+.
T Consensus 27 ~~G-iteI~G~pGsGKTtL~L 46 (333)
T 3io5_A 27 QSG-LLILAGPSKSFKSNFGL 46 (333)
T ss_dssp CSE-EEEEEESSSSSHHHHHH
T ss_pred cCC-eEEEECCCCCCHHHHHH
Confidence 346 79999999999999865
No 413
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=70.91 E-value=1.4 Score=41.23 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|.+|+|||||..
T Consensus 27 ki~vvG~~~~GKSsli~ 43 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLI 43 (207)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999854
No 414
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=70.86 E-value=1.4 Score=40.76 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=15.7
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
-.++|+|++|+|||||..
T Consensus 21 ~ki~~~G~~~~GKssl~~ 38 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVV 38 (201)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 459999999999999854
No 415
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=70.77 E-value=1.4 Score=41.28 Aligned_cols=18 Identities=28% Similarity=0.274 Sum_probs=15.8
Q ss_pred CCEEEEEecCCCCccccc
Q 005865 364 GDVALFFGLSGTGKTTLS 381 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLS 381 (673)
.-.++|+|.+|+|||||.
T Consensus 30 ~~ki~vvG~~~~GKSsLi 47 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLL 47 (204)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred eEEEEEECcCCCCHHHHH
Confidence 346999999999999986
No 416
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=70.27 E-value=1.4 Score=40.81 Aligned_cols=18 Identities=39% Similarity=0.475 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
-.++|+|.+|+|||||..
T Consensus 21 ~~i~v~G~~~~GKSsli~ 38 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLV 38 (213)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 469999999999999854
No 417
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=70.27 E-value=1.5 Score=43.67 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|.+|+|||||..
T Consensus 5 ~i~lvG~~g~GKTTL~n 21 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFN 21 (271)
T ss_dssp EEEEEECSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68999999999999854
No 418
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=70.26 E-value=1.4 Score=40.91 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
-.++|+|.+|+|||||..
T Consensus 29 ~ki~v~G~~~~GKSsli~ 46 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLM 46 (199)
T ss_dssp EEEEEESSTTSSHHHHHH
T ss_pred eEEEEECcCCCCHHHHHH
Confidence 469999999999999854
No 419
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=70.21 E-value=1.4 Score=40.45 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=15.7
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
-.++|+|.+|+|||||..
T Consensus 23 ~ki~v~G~~~~GKSsli~ 40 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVN 40 (188)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 459999999999999754
No 420
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=70.09 E-value=1.5 Score=41.39 Aligned_cols=17 Identities=41% Similarity=0.569 Sum_probs=15.4
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|.+|+|||||..
T Consensus 17 ki~v~G~~~~GKSsli~ 33 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVK 33 (221)
T ss_dssp EEEEEECTTSSHHHHHT
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999865
No 421
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=70.05 E-value=1.4 Score=42.04 Aligned_cols=19 Identities=16% Similarity=0.365 Sum_probs=16.3
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
...++|+|.+|+|||||..
T Consensus 29 ~~kI~vvG~~~vGKSsLin 47 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMN 47 (228)
T ss_dssp SEEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3469999999999999864
No 422
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=70.04 E-value=1.4 Score=40.21 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=16.7
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
..-.+++.|.+|+|||||..
T Consensus 21 ~~~~i~v~G~~~~GKssli~ 40 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILY 40 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHH
Confidence 34469999999999999854
No 423
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=70.03 E-value=1.4 Score=41.24 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|.+|+|||||..
T Consensus 13 ki~vvG~~~~GKSsli~ 29 (218)
T 4djt_A 13 KICLIGDGGVGKTTYIN 29 (218)
T ss_dssp EEEEECCTTSSHHHHHC
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999854
No 424
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=69.92 E-value=1.5 Score=40.13 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|.+|+|||||..
T Consensus 20 ki~v~G~~~~GKssli~ 36 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLM 36 (194)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999754
No 425
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=69.92 E-value=1.2 Score=44.63 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=16.3
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
...++|.|+.||||||++.
T Consensus 58 kn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp CSEEEEESCGGGCHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHH
Confidence 4569999999999999754
No 426
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=69.91 E-value=1.4 Score=41.23 Aligned_cols=17 Identities=47% Similarity=0.491 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|++|+|||||..
T Consensus 27 ki~vvG~~~~GKSsLi~ 43 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLY 43 (217)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 49999999999999854
No 427
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=69.83 E-value=1.4 Score=48.91 Aligned_cols=19 Identities=21% Similarity=0.574 Sum_probs=16.5
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
|..++|+|++|||||+|+.
T Consensus 41 ~~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp TCEEEEECCSSSSHHHHHH
T ss_pred CCeeEeecCchHHHHHHHH
Confidence 4579999999999999764
No 428
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=69.80 E-value=2.6 Score=45.82 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHHhcccCceeecccccccCCCCCEEEEEecCCCCcccccc
Q 005865 333 EMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 333 EmKK~iltl~n~~l~~~G~LpmH~sanvg~~G~~alfFGLSGTGKTTLSa 382 (673)
.++|.+..-+..++.... + ..+.. .+.+++|.|++|+||||++.
T Consensus 73 ~~~~~v~~~L~~~~~~~~----~-~i~l~-~~~vi~i~G~~GsGKTT~~~ 116 (425)
T 2ffh_A 73 VILATVYEALKEALGGEA----R-LPVLK-DRNLWFLVGLQGSGKTTTAA 116 (425)
T ss_dssp HHHHHHHHHHHHHTTSSC----C-CCCCC-SSEEEEEECCTTSSHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCc----c-cccCC-CCeEEEEECCCCCCHHHHHH
Confidence 456666655544443211 0 11222 57789999999999999765
No 429
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=69.69 E-value=0.83 Score=47.88 Aligned_cols=19 Identities=32% Similarity=0.611 Sum_probs=17.0
Q ss_pred CCCCEEEEEecCCCCccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLS 381 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLS 381 (673)
..| ..+|.|++|+|||||.
T Consensus 59 ~~G-~~~lvG~NGaGKStLl 77 (415)
T 4aby_A 59 GGG-FCAFTGETGAGKSIIV 77 (415)
T ss_dssp CSS-EEEEEESHHHHHHHHT
T ss_pred CCC-cEEEECCCCCCHHHHH
Confidence 567 9999999999999975
No 430
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=69.67 E-value=1.6 Score=40.60 Aligned_cols=20 Identities=35% Similarity=0.421 Sum_probs=16.8
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
..-.++++|++|+|||||..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~ 47 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILY 47 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHH
Confidence 34569999999999999855
No 431
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=69.64 E-value=1.4 Score=48.03 Aligned_cols=17 Identities=41% Similarity=0.655 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.+++.|+||+|||||+.
T Consensus 4 ~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEECSSSSHHHHHH
T ss_pred EEEEECcchhhHHHHHH
Confidence 58899999999999875
No 432
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=69.46 E-value=1.6 Score=43.52 Aligned_cols=18 Identities=28% Similarity=0.600 Sum_probs=16.3
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..+++.|+.|+|||||..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~ 49 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLR 49 (350)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcCCHHHHHH
Confidence 689999999999999865
No 433
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=69.45 E-value=1.3 Score=47.93 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=16.2
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
...+++.|++|+||||++.
T Consensus 39 ~~~IvlvGlpGsGKSTia~ 57 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISK 57 (469)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHH
Confidence 3469999999999999765
No 434
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=69.37 E-value=1.6 Score=41.28 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|.+|+|||||..
T Consensus 36 ki~vvG~~~vGKSsli~ 52 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLM 52 (214)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999854
No 435
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=69.35 E-value=1.6 Score=44.88 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=19.1
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|+.+++.|.+|+|||||+.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l 86 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFAL 86 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHH
Confidence 578999999999999999865
No 436
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=69.03 E-value=1.7 Score=53.52 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.3
Q ss_pred CCCCCEEEEEecCCCCcccccc
Q 005865 361 GKDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 361 g~~G~~alfFGLSGTGKTTLSa 382 (673)
-+.|..+++.|+||+|||||..
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ 462 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIIS 462 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHH
T ss_pred ecCCcEEEEEecCCCcHHHHHH
Confidence 3678999999999999999754
No 437
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=68.95 E-value=1.8 Score=53.22 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=18.5
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|.++.+.|.||+|||||..
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~ 1123 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVA 1123 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHH
T ss_pred CCCCEEEEECCCCChHHHHHH
Confidence 568889999999999999765
No 438
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=68.94 E-value=1.6 Score=46.49 Aligned_cols=19 Identities=21% Similarity=0.569 Sum_probs=16.6
Q ss_pred CCCEEEEEecCCCCccccc
Q 005865 363 DGDVALFFGLSGTGKTTLS 381 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLS 381 (673)
.|...+|.|++|+|||||.
T Consensus 25 ~~~~~~i~G~nG~GKstll 43 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMM 43 (430)
T ss_dssp TCSEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999953
No 439
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=68.90 E-value=1.7 Score=40.61 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=15.6
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
-.++|.|++|+|||||..
T Consensus 10 ~ki~i~G~~~~GKTsli~ 27 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLI 27 (212)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 359999999999999854
No 440
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=68.61 E-value=1.5 Score=52.56 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=18.5
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|+.+.+.|+||+|||||..
T Consensus 459 ~~Ge~v~LiGpNGsGKSTLLk 479 (986)
T 2iw3_A 459 KRARRYGICGPNGCGKSTLMR 479 (986)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 578999999999999999743
No 441
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=68.55 E-value=1.7 Score=42.54 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..++|+|.+|+|||||..
T Consensus 23 ~~I~lvG~~g~GKStl~n 40 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGN 40 (260)
T ss_dssp EEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 469999999999999864
No 442
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=68.55 E-value=1.7 Score=40.46 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|.+|+|||||..
T Consensus 27 ki~vvG~~~~GKSsli~ 43 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLI 43 (201)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999854
No 443
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=68.42 E-value=1.6 Score=47.33 Aligned_cols=18 Identities=28% Similarity=0.604 Sum_probs=15.6
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..++|+|++|||||+|..
T Consensus 202 ~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp CEEEEESCTTTTTHHHHH
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 458999999999999764
No 444
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=68.37 E-value=1.4 Score=41.82 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=15.7
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..+++.|.+||||||++.
T Consensus 4 ~~i~i~G~~gsGkst~~~ 21 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAK 21 (219)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999999765
No 445
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=68.29 E-value=1.7 Score=41.10 Aligned_cols=18 Identities=33% Similarity=0.263 Sum_probs=15.7
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
-.++|.|.+|+|||||..
T Consensus 29 ~ki~vvG~~~vGKSsLi~ 46 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLH 46 (205)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 359999999999999854
No 446
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=68.07 E-value=1.6 Score=46.28 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=18.0
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.|+.++++|.+|+|||||+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal 81 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTL 81 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 57899999999999999865
No 447
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=68.00 E-value=1.5 Score=49.10 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=17.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.+..++|.|++|+||||++.
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~ 390 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAE 390 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHH
Confidence 446789999999999999765
No 448
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=68.00 E-value=1.7 Score=43.26 Aligned_cols=17 Identities=41% Similarity=0.581 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.+++.|.||+|||||..
T Consensus 10 ~I~vvG~~g~GKSTLin 26 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLIN 26 (274)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999864
No 449
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=67.66 E-value=1 Score=42.24 Aligned_cols=19 Identities=32% Similarity=0.317 Sum_probs=16.4
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
...++|+|.+|+|||||..
T Consensus 29 ~~~i~v~G~~~~GKSslin 47 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAIN 47 (223)
T ss_dssp SCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHH
Confidence 3579999999999999864
No 450
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=67.61 E-value=1.5 Score=45.07 Aligned_cols=19 Identities=42% Similarity=0.602 Sum_probs=17.2
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
+.+++|.|.+|+||||++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp SEEEEEECSSCSSTTHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 7889999999999999765
No 451
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=67.59 E-value=1.7 Score=47.21 Aligned_cols=17 Identities=41% Similarity=0.581 Sum_probs=14.8
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.+++.|.||+|||||..
T Consensus 33 ~I~lvG~sGaGKSTLln 49 (418)
T 2qag_C 33 TLMVVGESGLGKSTLIN 49 (418)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 47999999999999754
No 452
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=67.36 E-value=1.8 Score=53.03 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=19.2
Q ss_pred CCCCCEEEEEecCCCCcccccc
Q 005865 361 GKDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 361 g~~G~~alfFGLSGTGKTTLSa 382 (673)
-+.|..+++.|+||+|||||..
T Consensus 413 i~~G~~~~ivG~sGsGKSTl~~ 434 (1284)
T 3g5u_A 413 VKSGQTVALVGNSGCGKSTTVQ 434 (1284)
T ss_dssp ECTTCEEEEECCSSSSHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 3678999999999999999754
No 453
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=67.23 E-value=1.9 Score=40.36 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|++|+|||||..
T Consensus 31 ki~vvG~~~vGKSsli~ 47 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQ 47 (201)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 49999999999999854
No 454
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=67.16 E-value=1.8 Score=39.70 Aligned_cols=17 Identities=35% Similarity=0.737 Sum_probs=14.9
Q ss_pred CEEEEEecCCCCccccc
Q 005865 365 DVALFFGLSGTGKTTLS 381 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLS 381 (673)
...+|.|+.|+|||||.
T Consensus 24 g~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 47899999999999963
No 455
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=66.80 E-value=1.8 Score=40.30 Aligned_cols=17 Identities=35% Similarity=0.645 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.+++.|++|+|||||..
T Consensus 8 kv~lvG~~~vGKSsL~~ 24 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLAN 24 (192)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999864
No 456
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=66.41 E-value=1.9 Score=42.94 Aligned_cols=18 Identities=33% Similarity=0.647 Sum_probs=16.1
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..+++.|++|+|||||..
T Consensus 31 ~~v~i~G~~G~GKT~L~~ 48 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIK 48 (357)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 479999999999999865
No 457
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=66.09 E-value=1.9 Score=40.88 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|++|+|||||..
T Consensus 29 ki~vvG~~~vGKSsL~~ 45 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQ 45 (214)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 49999999999999864
No 458
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=66.06 E-value=1.6 Score=47.88 Aligned_cols=18 Identities=33% Similarity=0.601 Sum_probs=15.5
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..++|+|++|||||||+.
T Consensus 51 ~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 349999999999999754
No 459
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=66.06 E-value=1.8 Score=45.64 Aligned_cols=19 Identities=32% Similarity=0.644 Sum_probs=15.7
Q ss_pred CCCCEEEEEecCCCCccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLS 381 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLS 381 (673)
..| ..++.|++|+|||||-
T Consensus 22 ~~g-~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 22 QSG-ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp CSE-EEEEECCTTSSHHHHH
T ss_pred CCC-eEEEECCCCCCHHHHH
Confidence 345 7889999999999964
No 460
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=65.98 E-value=1.9 Score=50.91 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=19.2
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..++|.|+||+|||||..
T Consensus 521 ~~Geiv~I~G~nGSGKSTLl~ 541 (842)
T 2vf7_A 521 PLGVMTSVTGVSGSGKSTLVS 541 (842)
T ss_dssp ESSSEEEEECCTTSSHHHHCC
T ss_pred cCCCEEEEEcCCCcCHHHHHH
Confidence 678999999999999999875
No 461
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=65.20 E-value=2.4 Score=40.28 Aligned_cols=19 Identities=32% Similarity=0.337 Sum_probs=16.8
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
|...++.|+-|+||||+..
T Consensus 3 g~i~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELL 21 (184)
T ss_dssp CCEEEEEESTTSSHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHH
Confidence 6789999999999999764
No 462
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=65.01 E-value=1.7 Score=47.69 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=17.5
Q ss_pred CCCEEEEEecCCCCcccccc
Q 005865 363 DGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLSa 382 (673)
.+.+++|.|++|+||||+++
T Consensus 99 ~p~vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHH
Confidence 35789999999999999765
No 463
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=64.98 E-value=2 Score=42.32 Aligned_cols=17 Identities=24% Similarity=0.516 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++++|.+|+|||||..
T Consensus 23 ~I~lvG~~g~GKSSlin 39 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGN 39 (247)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 59999999999999854
No 464
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=64.94 E-value=1.8 Score=46.98 Aligned_cols=20 Identities=40% Similarity=0.722 Sum_probs=17.1
Q ss_pred CCEEEEEecCCCCccccccc
Q 005865 364 GDVALFFGLSGTGKTTLSTD 383 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSad 383 (673)
..+++|.|++|+|||||++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~ 118 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAK 118 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35799999999999998763
No 465
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=64.83 E-value=2.4 Score=43.49 Aligned_cols=18 Identities=33% Similarity=0.625 Sum_probs=15.6
Q ss_pred CCCEEEEEecCCCCccccc
Q 005865 363 DGDVALFFGLSGTGKTTLS 381 (673)
Q Consensus 363 ~G~~alfFGLSGTGKTTLS 381 (673)
.| ..+|.|++|+|||||.
T Consensus 24 ~g-~~~i~G~NGsGKS~ll 41 (322)
T 1e69_A 24 DR-VTAIVGPNGSGKSNII 41 (322)
T ss_dssp SS-EEEEECCTTTCSTHHH
T ss_pred CC-cEEEECCCCCcHHHHH
Confidence 44 8999999999999963
No 466
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=68.41 E-value=1.4 Score=41.06 Aligned_cols=18 Identities=28% Similarity=0.254 Sum_probs=15.7
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
-.++|+|.+|+|||||..
T Consensus 31 ~ki~v~G~~~~GKSsli~ 48 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLI 48 (204)
Confidence 459999999999999863
No 467
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=64.58 E-value=1.9 Score=46.17 Aligned_cols=17 Identities=29% Similarity=0.698 Sum_probs=14.9
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|.|++|+||||+..
T Consensus 26 ~i~l~G~~G~GKTTl~~ 42 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAE 42 (359)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 38999999999999764
No 468
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=64.24 E-value=2.2 Score=52.27 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=18.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+.+.|+||+|||||..
T Consensus 1057 ~~Ge~v~ivG~sGsGKSTl~~ 1077 (1284)
T 3g5u_A 1057 KKGQTLALVGSSGCGKSTVVQ 1077 (1284)
T ss_dssp CSSSEEEEECSSSTTHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999754
No 469
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=64.14 E-value=2.3 Score=45.93 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=19.0
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|+.+++.|.+|+|||||+.
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l 221 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFAL 221 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 578999999999999999865
No 470
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=63.89 E-value=2.2 Score=40.47 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|.+|+|||||..
T Consensus 15 ki~v~G~~~vGKSsli~ 31 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLS 31 (223)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999854
No 471
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=63.66 E-value=2.2 Score=50.87 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=18.3
Q ss_pred CCCCEEEEEecCCCCccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLS 381 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLS 381 (673)
+.|..+++.|+||+|||||.
T Consensus 608 ~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 608 PLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp ESSSEEEEECSTTSSHHHHH
T ss_pred cCCcEEEEEccCCCChhhhH
Confidence 56889999999999999995
No 472
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=63.58 E-value=2.1 Score=50.39 Aligned_cols=18 Identities=39% Similarity=0.652 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
+.+||+|++|||||+|+.
T Consensus 239 ~GILL~GPPGTGKT~LAr 256 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 569999999999999754
No 473
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=63.04 E-value=2.4 Score=44.39 Aligned_cols=21 Identities=24% Similarity=0.162 Sum_probs=17.6
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
.++.+++|.|.+|+|||||..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln 92 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIE 92 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHH
Confidence 346789999999999999754
No 474
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=63.01 E-value=2.5 Score=49.51 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=18.4
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|+.+++.|++|+|||||..
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr 625 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMR 625 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHH
Confidence 568899999999999999744
No 475
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=62.71 E-value=2.2 Score=42.94 Aligned_cols=18 Identities=39% Similarity=0.508 Sum_probs=14.3
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..++|.|++||||||+..
T Consensus 49 ~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp SEEEECSSTTSSHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHH
Confidence 356777789999999865
No 476
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=62.64 E-value=2.5 Score=41.87 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=15.7
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
-.++++|.+|+|||||..
T Consensus 40 ~~I~vvG~~g~GKSSLin 57 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVN 57 (270)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 369999999999999854
No 477
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=62.63 E-value=2.1 Score=49.06 Aligned_cols=17 Identities=41% Similarity=0.745 Sum_probs=15.5
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|++|||||+|+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 69999999999999865
No 478
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=62.60 E-value=1.5 Score=52.57 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=18.3
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..+.+.|+||+|||||..
T Consensus 697 ~~GeivaIiGpNGSGKSTLLk 717 (986)
T 2iw3_A 697 SLSSRIAVIGPNGAGKSTLIN 717 (986)
T ss_dssp ETTCEEEECSCCCHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 467889999999999999754
No 479
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=62.30 E-value=2.6 Score=41.69 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
-.++++|.+|+|||||..
T Consensus 37 ~~I~lvG~~g~GKSSLin 54 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVN 54 (262)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 469999999999999864
No 480
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=62.14 E-value=2.5 Score=44.95 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=18.3
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|+.++|+|.+|+|||||+.
T Consensus 72 ~~G~li~I~G~pGsGKTtlal 92 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLAL 92 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHH
T ss_pred cCCcEEEEEcCCCCChHHHHH
Confidence 357889999999999999865
No 481
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=62.12 E-value=2.2 Score=46.43 Aligned_cols=20 Identities=45% Similarity=0.567 Sum_probs=17.0
Q ss_pred CCEEEEEecCCCCccccccc
Q 005865 364 GDVALFFGLSGTGKTTLSTD 383 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSad 383 (673)
..+++|.|++|+||||+++.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~ 119 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGK 119 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 46899999999999997763
No 482
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=61.51 E-value=2.8 Score=41.77 Aligned_cols=17 Identities=47% Similarity=0.546 Sum_probs=15.1
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
+++|.|.+|+|||||..
T Consensus 3 kI~lvG~~n~GKSTL~n 19 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFN 19 (256)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999754
No 483
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=61.37 E-value=2.3 Score=40.91 Aligned_cols=16 Identities=38% Similarity=0.613 Sum_probs=13.7
Q ss_pred EEEEecCCCCcccccc
Q 005865 367 ALFFGLSGTGKTTLST 382 (673)
Q Consensus 367 alfFGLSGTGKTTLSa 382 (673)
|+|-|+-||||||++.
T Consensus 3 I~~EG~DGsGKsTq~~ 18 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999999544
No 484
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=61.18 E-value=2.7 Score=40.40 Aligned_cols=17 Identities=35% Similarity=0.737 Sum_probs=15.0
Q ss_pred CEEEEEecCCCCccccc
Q 005865 365 DVALFFGLSGTGKTTLS 381 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLS 381 (673)
...+|+|+.|+|||||.
T Consensus 24 ~~~~I~G~NgsGKStil 40 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 47899999999999963
No 485
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=61.12 E-value=1.9 Score=44.29 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=16.4
Q ss_pred CCCEEEE--EecCCCCcccccc
Q 005865 363 DGDVALF--FGLSGTGKTTLST 382 (673)
Q Consensus 363 ~G~~alf--FGLSGTGKTTLSa 382 (673)
.+..+++ .|++|+|||||..
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHH
Confidence 3456888 9999999999865
No 486
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=61.06 E-value=2.9 Score=44.93 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=19.2
Q ss_pred CCCCEEEEEecCCCCccccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLSTD 383 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSad 383 (673)
..|+.+++.|.+|+|||||+..
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ 219 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALT 219 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHH
Confidence 5688999999999999998653
No 487
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=60.96 E-value=2.5 Score=44.84 Aligned_cols=19 Identities=42% Similarity=0.719 Sum_probs=16.2
Q ss_pred CCCCEEEEEecCCCCccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLS 381 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLS 381 (673)
..| ..+|.|++|+|||||.
T Consensus 25 ~~g-~~~i~G~nG~GKttll 43 (359)
T 2o5v_A 25 PEG-VTGIYGENGAGKTNLL 43 (359)
T ss_dssp CSE-EEEEECCTTSSHHHHH
T ss_pred cCC-eEEEECCCCCChhHHH
Confidence 345 8999999999999964
No 488
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=60.92 E-value=2.7 Score=48.16 Aligned_cols=18 Identities=28% Similarity=0.604 Sum_probs=15.5
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..++|.|++|||||++..
T Consensus 202 ~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 202 NNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp CEEEEESCTTTTTHHHHH
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 459999999999999754
No 489
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=60.50 E-value=2.9 Score=41.91 Aligned_cols=17 Identities=35% Similarity=0.397 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.++|+|.+|+|||||..
T Consensus 5 ~I~lvG~~n~GKSTLin 21 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFN 21 (274)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999855
No 490
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=60.22 E-value=2.8 Score=42.37 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=15.5
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
..+++.|.+|+|||||..
T Consensus 4 ~kI~lvG~~nvGKSTL~n 21 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFN 21 (272)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 358999999999999754
No 491
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=60.12 E-value=0.88 Score=45.35 Aligned_cols=17 Identities=35% Similarity=0.470 Sum_probs=13.9
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.+++.|+||+|||||..
T Consensus 29 ~~~i~GpnGsGKSTll~ 45 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMA 45 (227)
T ss_dssp HHHHHSCCSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45788999999999743
No 492
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=60.10 E-value=2.9 Score=40.44 Aligned_cols=17 Identities=35% Similarity=0.645 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.+++.|++|+|||||..
T Consensus 39 kVvlvG~~~vGKSSLl~ 55 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLAN 55 (211)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999999864
No 493
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=59.94 E-value=2.8 Score=50.41 Aligned_cols=21 Identities=38% Similarity=0.529 Sum_probs=18.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
+.|..+++.|+||+|||||..
T Consensus 666 ~~GeivaI~G~nGSGKSTLl~ 686 (993)
T 2ygr_A 666 PLGVLTSVTGVSGSGKSTLVN 686 (993)
T ss_dssp ESSSEEEEECSTTSSHHHHHT
T ss_pred CCCCEEEEEcCCCCCHHHHHH
Confidence 568899999999999999865
No 494
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=59.90 E-value=2.6 Score=40.91 Aligned_cols=18 Identities=39% Similarity=0.532 Sum_probs=15.0
Q ss_pred CEEEEEecCCCCcccccc
Q 005865 365 DVALFFGLSGTGKTTLST 382 (673)
Q Consensus 365 ~~alfFGLSGTGKTTLSa 382 (673)
.=|+|-|+-|+||||++.
T Consensus 3 kFI~~EG~dGsGKsTq~~ 20 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVIN 20 (205)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 348899999999999654
No 495
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=59.76 E-value=2.7 Score=44.00 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=15.7
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
+..++++|.||+|||||..
T Consensus 35 ~~~~~i~G~~G~GKs~~~~ 53 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAK 53 (392)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHH
Confidence 3458999999999999754
No 496
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=59.75 E-value=3.4 Score=44.42 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=18.0
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..+.|.|++|+|||||-.
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n 38 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFR 38 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 457889999999999999743
No 497
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=59.47 E-value=2.7 Score=47.31 Aligned_cols=19 Identities=42% Similarity=0.629 Sum_probs=15.8
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
.+.+++.||.|||||++.+
T Consensus 205 ~~~~lI~GPPGTGKT~ti~ 223 (646)
T 4b3f_X 205 KELAIIHGPPGTGKTTTVV 223 (646)
T ss_dssp SSEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 3579999999999998543
No 498
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=59.12 E-value=3 Score=48.66 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=17.2
Q ss_pred CCEEEEEecCCCCcccccc
Q 005865 364 GDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 364 G~~alfFGLSGTGKTTLSa 382 (673)
|+.+++.|++|+|||||..
T Consensus 576 g~i~~I~GpNGsGKSTlLr 594 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLR 594 (765)
T ss_dssp SCEEEEESCSSSSHHHHHH
T ss_pred CcEEEEECCCCCChHHHHH
Confidence 8899999999999999744
No 499
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=58.79 E-value=2.8 Score=41.66 Aligned_cols=21 Identities=29% Similarity=0.167 Sum_probs=17.0
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 005865 362 KDGDVALFFGLSGTGKTTLST 382 (673)
Q Consensus 362 ~~G~~alfFGLSGTGKTTLSa 382 (673)
..|..+++.|+.|+||||+..
T Consensus 10 ~~G~i~litG~mGsGKTT~ll 30 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELI 30 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHH
Confidence 346789999999999999654
No 500
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=57.64 E-value=3.3 Score=41.25 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=15.1
Q ss_pred EEEEEecCCCCcccccc
Q 005865 366 VALFFGLSGTGKTTLST 382 (673)
Q Consensus 366 ~alfFGLSGTGKTTLSa 382 (673)
.+++.|.+|+|||||..
T Consensus 7 kI~lvG~~nvGKTsL~n 23 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFN 23 (258)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999854
Done!