Query 005867
Match_columns 673
No_of_seqs 193 out of 2234
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 09:36:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005867.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005867hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mdb_A 2,3-dihydroxybenzoate-A 100.0 4.5E-74 1.5E-78 639.3 43.1 504 41-667 24-539 (539)
2 3g7s_A Long-chain-fatty-acid-- 100.0 8.5E-74 2.9E-78 638.8 45.0 517 32-660 9-543 (549)
3 3ni2_A 4-coumarate:COA ligase; 100.0 5.6E-74 1.9E-78 638.4 43.1 522 19-659 3-535 (536)
4 3r44_A Fatty acyl COA syntheta 100.0 5.2E-73 1.8E-77 627.5 45.0 498 39-661 13-515 (517)
5 3etc_A AMP-binding protein; ad 100.0 1.3E-72 4.3E-77 631.7 48.5 510 38-659 52-579 (580)
6 1v25_A Long-chain-fatty-acid-C 100.0 2.3E-73 7.7E-78 633.9 39.4 504 40-660 16-537 (541)
7 1t5h_X 4-chlorobenzoyl COA lig 100.0 2.9E-72 9.9E-77 620.1 44.7 489 41-658 1-503 (504)
8 3rix_A Luciferase, luciferin 4 100.0 1.1E-72 3.8E-77 630.0 39.0 525 32-665 10-547 (550)
9 3o83_A Peptide arylation enzym 100.0 1.1E-72 3.8E-77 628.8 38.8 500 41-659 29-540 (544)
10 2d1s_A Luciferase, luciferin 4 100.0 1.3E-71 4.3E-76 620.5 44.2 510 41-664 24-548 (548)
11 4fuq_A Malonyl COA synthetase; 100.0 4.2E-72 1.4E-76 618.1 39.7 491 46-659 4-500 (503)
12 1pg4_A Acetyl-COA synthetase; 100.0 1.8E-71 6.1E-76 630.9 44.9 524 40-664 74-626 (652)
13 3c5e_A Acyl-coenzyme A synthet 100.0 2.3E-70 8E-75 612.4 49.0 510 38-660 34-563 (570)
14 3ivr_A Putative long-chain-fat 100.0 1.2E-71 4.3E-76 616.0 37.0 494 39-661 3-503 (509)
15 1ry2_A Acetyl-coenzyme A synth 100.0 9.6E-71 3.3E-75 625.1 43.3 532 40-664 80-642 (663)
16 3e7w_A D-alanine--poly(phospho 100.0 4.1E-70 1.4E-74 604.0 43.6 487 42-660 1-504 (511)
17 4gr5_A Non-ribosomal peptide s 100.0 5.4E-71 1.9E-75 618.7 36.4 479 38-656 71-568 (570)
18 3rg2_A Enterobactin synthase c 100.0 8.9E-70 3.1E-74 614.3 45.5 502 40-663 25-538 (617)
19 2v7b_A Benzoate-coenzyme A lig 100.0 1E-69 3.6E-74 603.5 44.3 503 37-655 19-528 (529)
20 3fce_A D-alanine--poly(phospho 100.0 3E-70 1E-74 605.5 39.0 488 42-660 1-505 (512)
21 1amu_A GRSA, gramicidin synthe 100.0 8.9E-70 3.1E-74 606.8 41.4 474 41-657 38-527 (563)
22 4dg8_A PA1221; ANL superfamily 100.0 1.5E-69 5.1E-74 610.2 42.8 473 41-661 26-515 (620)
23 3ipl_A 2-succinylbenzoate--COA 100.0 5.3E-70 1.8E-74 602.0 36.4 491 43-660 2-498 (501)
24 3l8c_A D-alanine--poly(phospho 100.0 1.4E-69 4.8E-74 601.6 38.6 493 41-661 3-514 (521)
25 3tsy_A Fusion protein 4-coumar 100.0 5.2E-70 1.8E-74 647.7 35.3 541 15-668 38-591 (979)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 1.8E-69 6.3E-74 597.0 34.4 477 39-655 19-504 (505)
27 3gqw_A Fatty acid AMP ligase; 100.0 5E-67 1.7E-71 589.0 45.1 515 31-669 10-573 (576)
28 3kxw_A Saframycin MX1 syntheta 100.0 2.8E-67 9.5E-72 592.5 40.6 502 40-659 9-567 (590)
29 3ite_A SIDN siderophore synthe 100.0 1.2E-67 4.1E-72 591.3 32.7 523 36-668 14-553 (562)
30 2vsq_A Surfactin synthetase su 100.0 1.7E-65 5.8E-70 623.9 46.1 477 41-656 463-957 (1304)
31 3t5a_A Long-chain-fatty-acid-- 100.0 2.5E-55 8.7E-60 482.4 31.1 401 40-514 22-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 8.3E-49 2.8E-53 411.8 21.2 314 219-661 36-356 (358)
33 2y4o_A Phenylacetate-coenzyme 100.0 1.3E-43 4.5E-48 384.7 23.8 338 216-655 88-440 (443)
34 3qov_A Phenylacetate-coenzyme 100.0 2.4E-43 8.1E-48 381.8 23.9 333 216-652 81-430 (436)
35 2y27_A Phenylacetate-coenzyme 100.0 1.3E-42 4.6E-47 376.1 27.6 334 216-652 86-432 (437)
36 3hgu_A EHPF; phenazine, antibi 99.9 5.1E-27 1.8E-31 247.9 18.6 239 217-525 88-368 (369)
37 3lax_A Phenylacetate-coenzyme 99.3 4.6E-12 1.6E-16 107.6 8.2 52 513-565 1-55 (109)
38 3gxs_A Phenylacetate-coenzyme 99.1 1E-10 3.6E-15 99.0 8.5 99 513-651 1-102 (109)
39 4eql_A 4-substituted benzoates 98.7 1E-07 3.5E-12 103.3 13.2 133 383-538 297-446 (581)
40 4b2g_A GH3-1 auxin conjugating 98.6 9.7E-07 3.3E-11 95.9 19.3 158 383-563 302-493 (609)
41 4epl_A Jasmonic acid-amido syn 98.5 1.3E-06 4.6E-11 94.4 14.7 162 380-563 299-488 (581)
42 2y27_A Phenylacetate-coenzyme 91.4 1.3 4.5E-05 46.4 12.2 107 55-164 88-198 (437)
43 2y4o_A Phenylacetate-coenzyme 90.7 1.5 5.1E-05 46.1 11.9 105 56-163 91-199 (443)
44 3qov_A Phenylacetate-coenzyme 89.8 2.6 9.1E-05 44.0 12.8 123 57-182 86-217 (436)
45 3ipl_A 2-succinylbenzoate--COA 86.7 7 0.00024 41.6 13.9 122 55-182 161-285 (501)
46 3hgu_A EHPF; phenazine, antibi 80.2 7.1 0.00024 39.6 10.1 106 55-164 89-221 (369)
47 1mdb_A 2,3-dihydroxybenzoate-A 79.8 20 0.00069 38.4 14.1 122 55-182 180-309 (539)
48 2d1s_A Luciferase, luciferin 4 79.5 12 0.00039 40.4 12.0 122 57-182 192-320 (548)
49 4dg8_A PA1221; ANL superfamily 75.7 14 0.00049 40.5 11.5 123 55-183 162-288 (620)
50 3o83_A Peptide arylation enzym 74.5 17 0.00059 39.0 11.6 103 55-163 189-296 (544)
51 3r44_A Fatty acyl COA syntheta 71.9 22 0.00074 37.9 11.5 101 56-163 169-273 (517)
52 3fce_A D-alanine--poly(phospho 71.9 23 0.00078 37.6 11.7 123 55-182 142-272 (512)
53 4gs5_A Acyl-COA synthetase (AM 70.9 15 0.00052 37.0 9.5 101 55-163 35-138 (358)
54 3rg2_A Enterobactin synthase c 70.5 35 0.0012 37.2 13.1 122 56-183 183-314 (617)
55 3e7w_A D-alanine--poly(phospho 70.5 33 0.0011 36.3 12.6 123 55-182 141-271 (511)
56 3kxw_A Saframycin MX1 syntheta 69.1 26 0.00089 37.9 11.6 123 55-182 165-300 (590)
57 4gr5_A Non-ribosomal peptide s 68.7 19 0.00064 39.0 10.3 122 55-182 212-337 (570)
58 3g7s_A Long-chain-fatty-acid-- 66.7 45 0.0015 35.6 12.8 106 218-327 32-139 (549)
59 3ni2_A 4-coumarate:COA ligase; 65.7 31 0.0011 36.8 11.2 101 218-328 35-137 (536)
60 3ivr_A Putative long-chain-fat 65.3 29 0.001 36.7 10.8 98 218-327 19-118 (509)
61 3c5e_A Acyl-coenzyme A synthet 65.0 31 0.0011 37.3 11.0 124 55-183 204-334 (570)
62 3rix_A Luciferase, luciferin 4 64.9 15 0.00051 39.6 8.4 102 220-328 35-138 (550)
63 1v25_A Long-chain-fatty-acid-C 64.7 42 0.0014 35.8 12.0 101 218-326 31-133 (541)
64 1pg4_A Acetyl-COA synthetase; 63.4 34 0.0012 37.6 11.2 124 56-183 255-390 (652)
65 3etc_A AMP-binding protein; ad 59.2 34 0.0012 37.0 10.1 124 55-183 223-353 (580)
66 1ry2_A Acetyl-coenzyme A synth 57.1 58 0.002 35.9 11.6 99 218-322 95-196 (663)
67 1t5h_X 4-chlorobenzoyl COA lig 56.9 58 0.002 34.3 11.3 98 218-325 15-116 (504)
68 3nyq_A Malonyl-COA ligase; A/B 55.9 63 0.0021 34.1 11.3 103 55-164 153-259 (505)
69 3t5a_A Long-chain-fatty-acid-- 54.8 80 0.0027 32.8 11.9 106 218-327 37-147 (480)
70 2v7b_A Benzoate-coenzyme A lig 54.8 45 0.0015 35.4 10.0 97 218-326 36-134 (529)
71 1amu_A GRSA, gramicidin synthe 54.4 66 0.0023 34.5 11.3 95 218-324 52-148 (563)
72 4fuq_A Malonyl COA synthetase; 54.1 44 0.0015 35.3 9.7 86 238-326 27-114 (503)
73 2vsq_A Surfactin synthetase su 49.3 39 0.0013 40.7 9.2 123 55-183 605-732 (1304)
74 3ezx_A MMCP 1, monomethylamine 47.4 1.3E+02 0.0043 27.6 10.4 53 266-318 93-149 (215)
75 3tbh_A O-acetyl serine sulfhyd 47.3 65 0.0022 31.9 9.1 66 92-157 61-127 (334)
76 3ite_A SIDN siderophore synthe 46.2 1E+02 0.0036 32.8 11.3 114 68-182 184-305 (562)
77 3tsy_A Fusion protein 4-coumar 43.3 77 0.0026 36.7 10.2 99 218-326 74-174 (979)
78 3l8c_A D-alanine--poly(phospho 38.7 1.1E+02 0.0036 32.3 9.7 81 238-321 28-110 (521)
79 4eez_A Alcohol dehydrogenase 1 35.6 1.4E+02 0.0046 29.5 9.4 78 76-156 136-216 (348)
80 3vc3_A Beta-cyanoalnine syntha 34.4 1.4E+02 0.0049 29.5 9.2 65 93-157 77-142 (344)
81 3ist_A Glutamate racemase; str 34.4 1.2E+02 0.0042 28.8 8.4 62 47-115 20-81 (269)
82 3gqw_A Fatty acid AMP ligase; 30.2 1.9E+02 0.0066 30.6 10.2 86 238-326 48-142 (576)
83 1z7w_A Cysteine synthase; tran 25.0 2.5E+02 0.0086 27.3 9.1 65 93-157 57-122 (322)
84 4aec_A Cysteine synthase, mito 25.0 2.4E+02 0.0082 29.0 9.1 63 94-156 166-229 (430)
85 2q3b_A Cysteine synthase A; py 24.9 2.7E+02 0.0093 26.9 9.3 64 93-157 58-122 (313)
86 3goh_A Alcohol dehydrogenase, 24.6 1.8E+02 0.0062 28.1 7.9 73 76-153 115-190 (315)
87 2egu_A Cysteine synthase; O-ac 23.6 2.9E+02 0.0098 26.6 9.2 64 93-157 56-120 (308)
88 2gzm_A Glutamate racemase; enz 23.4 3.4E+02 0.011 25.6 9.4 61 46-113 17-77 (267)
89 2jtq_A Phage shock protein E; 23.4 1.6E+02 0.0055 21.8 5.8 46 75-127 22-67 (85)
90 3ijw_A Aminoglycoside N3-acety 22.6 1.3E+02 0.0044 28.7 5.9 25 87-111 18-42 (268)
91 2pqm_A Cysteine synthase; OASS 22.3 2.8E+02 0.0095 27.3 8.8 64 93-157 69-133 (343)
92 3uhf_A Glutamate racemase; str 21.9 2.1E+02 0.0073 27.3 7.5 62 47-115 39-100 (274)
93 1zuw_A Glutamate racemase 1; ( 20.5 3.7E+02 0.013 25.4 9.0 61 46-113 17-78 (272)
94 4h1h_A LMO1638 protein; MCCF-l 20.4 2.4E+02 0.0081 27.7 7.7 61 97-157 8-87 (327)
95 2jfq_A Glutamate racemase; cel 20.3 3.4E+02 0.012 25.9 8.8 68 38-113 29-96 (286)
96 2cf5_A Atccad5, CAD, cinnamyl 20.1 2.1E+02 0.0073 28.2 7.5 77 77-156 153-233 (357)
97 1h2b_A Alcohol dehydrogenase; 20.1 2.6E+02 0.009 27.6 8.2 62 92-156 176-239 (359)
No 1
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=4.5e-74 Score=639.29 Aligned_cols=504 Identities=18% Similarity=0.170 Sum_probs=409.8
Q ss_pred CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (673)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA 120 (673)
..|+.++|+++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG----N-----THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC----C-----CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 468999999999999999999864 2 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhh----hhhcccccccccceEEEEeCCCcHHHHHHHhhCCCc
Q 005867 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (673)
Q Consensus 121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 196 (673)
|+++|++++|+++.++.+++.++++.++++++|+++.... ..........+....++..++..
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 161 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------- 161 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT-------------
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc-------------
Confidence 9999999999999999999999999999999999875321 01111111122333343333211
Q ss_pred eecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchH
Q 005867 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (673)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 276 (673)
.+.++.... ..........++++++++|||||||.||||.++|+++.+.+......+ ++.+++++++.+|++
T Consensus 162 --~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 233 (539)
T 1mdb_A 162 --EFLPLEDLH-TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMA 233 (539)
T ss_dssp --TSEEGGGCC-CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred --chhhhhhcc-ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeeccc
Confidence 111121111 111122345789999999999999999999999999999988877776 788999999999999
Q ss_pred hHHHHHH--hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 005867 277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (673)
Q Consensus 277 ~~~gl~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (673)
|.+++.. ++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+.+.....
T Consensus 234 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------- 293 (539)
T 1mdb_A 234 HNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR-------------------- 293 (539)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC--------------------
T ss_pred ccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcccc--------------------
Confidence 9999874 6778999999999887 9999999999999999999999999887643211
Q ss_pred HHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCcc
Q 005867 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433 (673)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~ 433 (673)
...+++||.+++||+++++++.+.|.+.+|+++++.||+||++..+.........
T Consensus 294 -------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 348 (539)
T 1mdb_A 294 -------------------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEI 348 (539)
T ss_dssp -------------------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred -------------------------CCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHh
Confidence 0112589999999999999999999998999999999999976443322222223
Q ss_pred ccCCcCCCccc-eeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCccccCceEEECCCCcEEE
Q 005867 434 MVGTAGPVSVY-SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511 (673)
Q Consensus 434 ~~~~~G~~~~~-~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~ 511 (673)
..+++|+|+++ .+++|+| +++. +++.|+.|||+|+||+++.||+++++.|...| .+|||+|||+|++|+||+|++
T Consensus 349 ~~~~~G~p~~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~ 425 (539)
T 1mdb_A 349 IVNTQGKPMSPYDESRVWD-DHDR--DVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVV 425 (539)
T ss_dssp HHHCCCEESSTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEE
T ss_pred cCCCCCcccCCCceEEEEC-CCCC--CCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEE
Confidence 34789999975 5899998 5554 55667899999999999999999999999999 699999999999999999999
Q ss_pred eecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHH
Q 005867 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ 588 (673)
Q Consensus 512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (673)
+||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++..+. .+.++
T Consensus 426 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~-----------------~~~~~ 487 (539)
T 1mdb_A 426 EGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA-----------------PKAAE 487 (539)
T ss_dssp EEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSC-----------------CCHHH
T ss_pred eccccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCC-----------------CCHHH
Confidence 9999999996 8999999999999999999999999997654 4788999877421 02223
Q ss_pred HHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhh
Q 005867 589 LQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK 667 (673)
Q Consensus 589 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~~~ly~~ 667 (673)
+ +++++++. ||.|++|+.|++++ .+|+|++||++|++|+++|.++|+++|.+
T Consensus 488 l--------~~~l~~~~-------------L~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~~~~~~i~~~y~~ 539 (539)
T 1mdb_A 488 L--------KAFLRERG-------------LAAYKIPDRVEFVE------SFPQTGVGKVSKKALREAISEKLLAGFKK 539 (539)
T ss_dssp H--------HHHHHHTT-------------CCGGGSCSEEEECS------SCCBCTTSCBCHHHHHHHHHHHHHTC---
T ss_pred H--------HHHHHhCC-------------CCcccCCCEEEEec------cCCCCCCcCEeHHHHHHHHHHHHhccccC
Confidence 3 33333334 99999999999983 34699999999999999999999999973
No 2
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=8.5e-74 Score=638.84 Aligned_cols=517 Identities=21% Similarity=0.236 Sum_probs=391.2
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeecccCC--CCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcC
Q 005867 32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGK--FGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA 109 (673)
Q Consensus 32 ~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~--~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~ 109 (673)
.++|+.+....||.++|+++|+++||++|+++. ++. .+..+++||+||.++++++|++|++.|+++||+|+++++
T Consensus 9 ~~~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~ 85 (549)
T 3g7s_A 9 IGFPSLYYPKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIP 85 (549)
T ss_dssp CCCCCCCCCCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred cCCCCCCcCCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECC
Confidence 345555666789999999999999999999987 421 234478999999999999999999999999999999999
Q ss_pred CcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHH
Q 005867 110 NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM 189 (673)
Q Consensus 110 ~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 189 (673)
|++++++++|||+++|++++|+++.++.+++.++++.++++++|++......+....... ....++..+.
T Consensus 86 ~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~-------- 155 (549)
T 3g7s_A 86 NSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKT--GVERVFVVGG-------- 155 (549)
T ss_dssp SSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTS--CCCEEEEETC--------
T ss_pred CCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhC--CCcEEEEeCC--------
Confidence 999999999999999999999999999999999999999999999988766553322211 2334444432
Q ss_pred HhhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEE
Q 005867 190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY 269 (673)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~ 269 (673)
...++.++...............++++++|+|||||||.||+|.++|+++.+.+......+ ++..+|++
T Consensus 156 ------~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~ 224 (549)
T 3g7s_A 156 ------EVNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMDTI 224 (549)
T ss_dssp ------SSSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTCEE
T ss_pred ------CCcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCCEE
Confidence 1235666665543222222222348999999999999999999999999999998887777 78999999
Q ss_pred EEecchHhHHHHHHhHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 005867 270 LSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL 348 (673)
Q Consensus 270 l~~~p~~~~~gl~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 348 (673)
++.+|++|.+++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+........
T Consensus 225 ~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~------------ 292 (549)
T 3g7s_A 225 VGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKT------------ 292 (549)
T ss_dssp ECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCC------------
T ss_pred EEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhccc------------
Confidence 999999999998887888999999999887 9999999999999999999999999987643211000
Q ss_pred HHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHh----cC---CceeeecCCCCCC
Q 005867 349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT----CC---AFLVQGYGLTETC 421 (673)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~----~g---~~v~~~YG~tE~~ 421 (673)
..++++|.+++||+++++++.+.+.+. ++ +++++.||+||++
T Consensus 293 -------------------------------~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~ 341 (549)
T 3g7s_A 293 -------------------------------YDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEAC 341 (549)
T ss_dssp -------------------------------CCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGS
T ss_pred -------------------------------CCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccc
Confidence 012489999999999999999999887 66 8999999999999
Q ss_pred CcccccCCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc---cCC--ccc
Q 005867 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI---IDG--WFH 496 (673)
Q Consensus 422 ~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~---~~g--~~~ 496 (673)
++++...........++|.|+++++++|+|.+++ .+++.|+.|||+|+||+++.||+++++.+.+.| .+| ||+
T Consensus 342 ~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~ 419 (549)
T 3g7s_A 342 PMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDG--RELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFR 419 (549)
T ss_dssp SEEEECCGGGGGGTTSCCEECTTCEEEEECSSSC--CEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEE
T ss_pred hhhhcCCccccCcCCCccccCCCCEEEEEeCCCC--cCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEc
Confidence 8877766554455589999999999999994333 356677899999999999999999999999998 677 999
Q ss_pred cCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHH
Q 005867 497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYS 573 (673)
Q Consensus 497 TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~ 573 (673)
|||+|++|+||.|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++...
T Consensus 420 TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~----- 493 (549)
T 3g7s_A 420 TGDVGFIDEEGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRG----- 493 (549)
T ss_dssp EEEEEEECTTSCEEEEEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTT-----
T ss_pred cCcEEEEcCCceEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccC-----
Confidence 9999999999999999999999997 8999999999999999999999999997654 378899998764200
Q ss_pred cCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHH
Q 005867 574 NGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKL 653 (673)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l 653 (673)
. .+.+++++++++ + ||.|++|+.|++++. +|+|++||++|++|
T Consensus 494 -~--------~~~~~l~~~l~~---------~-------------L~~~~~P~~i~~v~~------lP~t~~GKi~R~~L 536 (549)
T 3g7s_A 494 -K--------VDEEDIIEWVRE---------R-------------ISGYKRVREVEFVEE------LPRTASGKLLRRLL 536 (549)
T ss_dssp -S--------CCHHHHHHHHHT---------T-------------CC-----CCCCEEEE------CC------------
T ss_pred -c--------CCHHHHHHHHHH---------h-------------ccCcccceEEEEecc------CCCCCCcCEeHHHH
Confidence 0 123344444433 3 999999999999832 36999999999999
Q ss_pred HHHHHHH
Q 005867 654 LIYYQVE 660 (673)
Q Consensus 654 ~~~~~~~ 660 (673)
++++.+.
T Consensus 537 ~~~~~~~ 543 (549)
T 3g7s_A 537 REKEAEG 543 (549)
T ss_dssp -------
T ss_pred HHHhhcc
Confidence 9988653
No 3
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=5.6e-74 Score=638.40 Aligned_cols=522 Identities=25% Similarity=0.314 Sum_probs=420.4
Q ss_pred CCCCCceeccccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCC
Q 005867 19 PSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGA 98 (673)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv 98 (673)
|.+..+|++...+..+| ...++.++|.++++++||++|+++. ++. +++||+||.++++++|++|++.|+
T Consensus 3 ~~~~~i~~~~~~~~~~p----~~~~l~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv 71 (536)
T 3ni2_A 3 PQEEFIFRSKLPDIYIP----KNLPLHSYVLENLSNHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGI 71 (536)
T ss_dssp --CCCCBCCSSCCCCCC----SSCCHHHHHTTTGGGSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTC
T ss_pred cccceEEecCCCCCCCC----CCCcHHHHHHHHhhcCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCC
Confidence 34456777666554444 2478999999999999999999874 322 589999999999999999999999
Q ss_pred CCCCEEEEEcCCcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEE
Q 005867 99 EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVC 178 (673)
Q Consensus 99 ~~gd~V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~ 178 (673)
++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++......+....... .. .++.
T Consensus 72 ~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~~~~ 148 (536)
T 3ni2_A 72 QQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--DV-KVMC 148 (536)
T ss_dssp CTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--TC-EEEE
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--Cc-eEEE
Confidence 99999999999999999999999999999999999999999999999999999999987766554322211 12 2333
Q ss_pred eCCCcHHHHHHHhhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhcc
Q 005867 179 FTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ 258 (673)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~ 258 (673)
++... .....+.++...... ..+.....++++++|+|||||||.||+|.++|+++++.+........
T Consensus 149 ~~~~~-----------~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~- 215 (536)
T 3ni2_A 149 VDSAP-----------DGCLHFSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDN- 215 (536)
T ss_dssp SSCCC-----------TTCEETHHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSS-
T ss_pred ecCCC-----------CCccCHHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhcc-
Confidence 33221 124456666654322 22334567899999999999999999999999999988766543211
Q ss_pred ccCCCCCCcEEEEecchHhHHHHHH-hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHh
Q 005867 259 FEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336 (673)
Q Consensus 259 ~~~~~~~~d~~l~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~ 336 (673)
....+..+|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+...
T Consensus 216 ~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----- 290 (536)
T 3ni2_A 216 PNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD----- 290 (536)
T ss_dssp CSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSC-----
T ss_pred ccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcc-----
Confidence 0125778999999999999999865 5678999999999887 99999999999999999999999988754210
Q ss_pred hchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeec
Q 005867 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGY 415 (673)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~Y 415 (673)
.+. ..+++||.+++||+++++++.+.+++.+ ++++++.|
T Consensus 291 --------------------------------~~~--------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~Y 330 (536)
T 3ni2_A 291 --------------------------------LDK--------HDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGY 330 (536)
T ss_dssp --------------------------------GGG--------SCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEE
T ss_pred --------------------------------ccc--------CCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccc
Confidence 111 1225899999999999999999999988 89999999
Q ss_pred CCCCCCCcccccC----CCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-
Q 005867 416 GLTETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI- 490 (673)
Q Consensus 416 G~tE~~~~~~~~~----~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~- 490 (673)
|+||++.+++.+. .......+++|.|+++++++|+| ++.+ .+++.|+.|||+|+||+++.||+++++.+.+.|
T Consensus 331 G~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~ 408 (536)
T 3ni2_A 331 GMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVD-PETG-ASLPRNQPGEICIRGDQIMKGYLNDPEATSRTID 408 (536)
T ss_dssp ECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBC
T ss_pred cccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEe-CCCC-cCCCCCCccEEEEeCcccchhhcCChhHHHhhcc
Confidence 9999998755432 11233458899999999999999 4433 456677899999999999999999999999999
Q ss_pred cCCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHH
Q 005867 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDT 567 (673)
Q Consensus 491 ~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~ 567 (673)
.+|||+|||+|++|+||+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+..++..
T Consensus 409 ~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~ 487 (536)
T 3ni2_A 409 KEGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQ 487 (536)
T ss_dssp TTSCEEEEEEEEECTTSCEEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC
T ss_pred CCCceEcccEEEEcCCceEEEEecccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCC
Confidence 7899999999999999999999999999998 7999999999999999999999999986544 47899998876421
Q ss_pred HHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccc
Q 005867 568 KKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLK 647 (673)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GK 647 (673)
.+.+++++++++ + ||.|++|+.|++++ .+|+|++||
T Consensus 488 ----------------~~~~~l~~~l~~---------~-------------l~~~~~p~~i~~v~------~lP~t~~GK 523 (536)
T 3ni2_A 488 ----------------ATEDEIKQYISK---------Q-------------VIFYKRIKRVFFIE------AIPKAPSGK 523 (536)
T ss_dssp ----------------CCHHHHHHHHHT---------T-------------SCGGGCCSEEEECS------CCCBCTTSC
T ss_pred ----------------CCHHHHHHHHHH---------h-------------ccCCccccEEEEEe------cCCCCCCCC
Confidence 022334444332 3 99999999999883 346999999
Q ss_pred cchHHHHHHHHH
Q 005867 648 KKRNKLLIYYQV 659 (673)
Q Consensus 648 v~R~~l~~~~~~ 659 (673)
++|++|+++|++
T Consensus 524 i~R~~L~~~~~~ 535 (536)
T 3ni2_A 524 ILRKNLKEKLAG 535 (536)
T ss_dssp BCHHHHHTC---
T ss_pred eeHHHHHHHhcc
Confidence 999999998764
No 4
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=5.2e-73 Score=627.47 Aligned_cols=498 Identities=23% Similarity=0.308 Sum_probs=406.6
Q ss_pred CCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHH
Q 005867 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (673)
Q Consensus 39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~ 118 (673)
+...||.++|+++|+++||++|+++. +.. +++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 13 ~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~ 85 (517)
T 3r44_A 13 DKMKNIGWMLRQRATVSPRLQAYVEP---STD----VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLF 85 (517)
T ss_dssp GGGGCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred ccccCHHHHHHHHHHhCCCCeEEEeC---CcC----ceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHH
Confidence 34689999999999999999999975 321 58999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCcee
Q 005867 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (673)
Q Consensus 119 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 198 (673)
|||+++|++++|+++.++.+++.++++.++++++|++......+....... .....++.... ..
T Consensus 86 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------------~~ 149 (517)
T 3r44_A 86 YGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA-DPPGTVTDWIG---------------AD 149 (517)
T ss_dssp HHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSS-SCCTTCCEEEE---------------HH
T ss_pred HHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhcc-CCccEEEEccC---------------cc
Confidence 999999999999999999999999999999999999987665443221111 11111111100 01
Q ss_pred cHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhH
Q 005867 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (673)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~ 278 (673)
.+.+..... ....+.....++++++|+|||||||.||+|.++|+++.+.+......+ ++..+|++++.+|++|.
T Consensus 150 ~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~ 223 (517)
T 3r44_A 150 SLAERLRSA-AADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPMFHV 223 (517)
T ss_dssp HHHHHHHHC-CCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCTTSH
T ss_pred cHHHHhhcc-CcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCchHHH
Confidence 233333322 122233456789999999999999999999999999999998887777 78999999999999999
Q ss_pred HHHHHhHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhh
Q 005867 279 LDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN 357 (673)
Q Consensus 279 ~gl~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (673)
+++...+.++..|+++++.+. ++..+++.++++++|++.++|+++..|.+....
T Consensus 224 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------- 278 (517)
T 3r44_A 224 AALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEF------------------------- 278 (517)
T ss_dssp HHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHH-------------------------
T ss_pred HHHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc-------------------------
Confidence 999876666669999999887 999999999999999999999999988653211
Q ss_pred hcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCC-ccccC
Q 005867 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVG 436 (673)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~-~~~~~ 436 (673)
....+++||.+++||+++++++.+.+.+. ++++++.||+||+++.++...... ....+
T Consensus 279 --------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~ 337 (517)
T 3r44_A 279 --------------------AELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAG 337 (517)
T ss_dssp --------------------HHCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTT
T ss_pred --------------------ccCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCC
Confidence 11223589999999999999999999887 999999999999988766544332 34458
Q ss_pred CcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCCCcEEEeecCC
Q 005867 437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK 516 (673)
Q Consensus 437 ~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~ 516 (673)
++|.|++++++++++ +++... +.| .|||+|+||.++.||+++|+.+.+.|.+|||+|||+|++++||+++++||.|
T Consensus 338 ~~G~~~~~~~~~i~d-~~~~~~--~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d 413 (517)
T 3r44_A 338 SAGRATMFTDVAVRG-DDGVIR--EHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLK 413 (517)
T ss_dssp CCBEECTTEEEEEEC-TTSCEE--SSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEECGG
T ss_pred CCCcCCCCeEEEEEC-CCCCCC--CCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecCCc
Confidence 999999999999999 655433 334 7999999999999999999999999999999999999999999999999999
Q ss_pred CeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHH
Q 005867 517 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI 593 (673)
Q Consensus 517 d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (673)
|+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|...... .+..++++++
T Consensus 414 d~ik~-~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~-----------------~~~~~l~~~l 475 (517)
T 3r44_A 414 DMIIS-GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNE-----------------VSEQQIVEYC 475 (517)
T ss_dssp GCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTT-----------------CCHHHHHHHH
T ss_pred CEEEE-CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCC-----------------CCHHHHHHHH
Confidence 99997 8999999999999999999999999987654 2566666433221 1334555555
Q ss_pred HHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 005867 594 LSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI 661 (673)
Q Consensus 594 ~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~ 661 (673)
.+. ||.|++|+.|++++ .+|+|++||++|++|+++|.+.+
T Consensus 476 ~~~----------------------L~~~~~P~~i~~v~------~lP~t~~GKi~R~~L~~~~~~~~ 515 (517)
T 3r44_A 476 GTR----------------------LARYKLPKKVIFAE------AIPRNPTGKILKTVLREQYSATV 515 (517)
T ss_dssp HHH----------------------SCGGGSCSEEEECS------CCCBCTTCCBCHHHHHHHHGGGC
T ss_pred HHh----------------------CCCCCCCCEEEEEC------CCCCCCCcCccHHHHHHHHHhhc
Confidence 544 99999999999983 34699999999999999997654
No 5
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1.3e-72 Score=631.68 Aligned_cols=510 Identities=17% Similarity=0.153 Sum_probs=397.6
Q ss_pred CCCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHH
Q 005867 38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA 117 (673)
Q Consensus 38 ~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~ 117 (673)
+..++.+.++|+.+|+++||++|+++. ++ .+..+++||+||.++++++|++|++.|+++||+|+++++|+++++++
T Consensus 52 ~~~~n~~~~~l~~~a~~~pd~~Al~~~---~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~ 127 (580)
T 3etc_A 52 PENFNFAYDVVDVYARDSPEKLAMIWC---DD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYC 127 (580)
T ss_dssp CSSCCHHHHTHHHHHHHCTTCEEEEEE---ES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHH
T ss_pred cccchHHHHHHHHHHhhCCCCEEEEEE---cC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHH
Confidence 456788889999999999999999986 43 23347999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhh--hhhhcccccccccc-eEEEEeCCCcHHHHHHHhhCC
Q 005867 118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV--KELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQTG 194 (673)
Q Consensus 118 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~ 194 (673)
+|||+++|++++|+++.++.+++.++++.++++++|++.+.. ..+.... ...+.. ..++.++... .
T Consensus 128 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~ 196 (580)
T 3etc_A 128 MLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAH-AECGDIPLKKAKVGGDV----------L 196 (580)
T ss_dssp HHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHH-HHHCSCCCEEEEESSSC----------C
T ss_pred HHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHh-hhCCCcceEEEEeCCcc----------c
Confidence 999999999999999999999999999999999999987643 2222211 111222 3344443221 1
Q ss_pred CceecHHHHHhcCccCCccC---CCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEE
Q 005867 195 IKPYSWDEFLHLGKVNEMEI---LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271 (673)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~ 271 (673)
..+.++.+.+.........+ ....++++++|+|||||||.||+|.++|.+++..+......+ ++..++++++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 271 (580)
T 3etc_A 197 EGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-----NVEDDGLHYT 271 (580)
T ss_dssp TTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-----CCCTTCEEEE
T ss_pred cccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-----CCCCCceEEE
Confidence 23556776665543322111 246789999999999999999999999999888777655544 7889999999
Q ss_pred ecchHhHHHHHH-hHHHhhcCcEEEEecC---CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 005867 272 FLPLAHILDRVI-EEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA 347 (673)
Q Consensus 272 ~~p~~~~~gl~~-~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (673)
..|+.|..++.. ++.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+..
T Consensus 272 ~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~----------------- 334 (580)
T 3etc_A 272 VADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED----------------- 334 (580)
T ss_dssp CCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-----------------
T ss_pred eCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-----------------
Confidence 999999888775 5667899999988742 8999999999999999999999998875420
Q ss_pred HHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCccccc
Q 005867 348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 427 (673)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~ 427 (673)
. ....+++||.+++||+++++++.++|.+.+|+++++.||+||++..++..
T Consensus 335 ---------------------~--------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~ 385 (580)
T 3etc_A 335 ---------------------L--------SHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATF 385 (580)
T ss_dssp ---------------------C-----------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECC
T ss_pred ---------------------c--------ccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecC
Confidence 0 01122589999999999999999999998999999999999998776654
Q ss_pred CCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEec-----CCccccccCCchhhhhhccCCccccCceEE
Q 005867 428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG-----KTLFSGYYKNPDLTRESIIDGWFHTGDIGQ 502 (673)
Q Consensus 428 ~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~g-----p~~~~gy~~~~~~~~~~~~~g~~~TGDlg~ 502 (673)
+.. ....+++|+|+++++++|+| +++. +++.|+.|||+|+| +.++.||+++|+.+.+.|.+|||+|||+|+
T Consensus 386 ~~~-~~~~~~~G~p~~~~~v~ivd-~~g~--~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~ 461 (580)
T 3etc_A 386 PWM-EPKPGSIGKPTPGYKIELMD-RDGR--LCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAW 461 (580)
T ss_dssp TTS-CCCTTCCBEECTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEE
T ss_pred CCC-CCCCCccccCCCCCEEEEEC-CCCC--CCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEE
Confidence 433 33458999999999999999 6654 45567899999997 789999999999999999999999999999
Q ss_pred ECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCc
Q 005867 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGS 579 (673)
Q Consensus 503 ~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~ 579 (673)
+|+||+|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++..
T Consensus 462 ~d~dG~l~~~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~------------ 528 (580)
T 3etc_A 462 MDEDGYLWFVGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYT------------ 528 (580)
T ss_dssp ECTTSCEEEEEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC------------
T ss_pred ECCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCC------------
Confidence 9999999999999999997 6999999999999999999999999997654 47889999887531
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 005867 580 FLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV 659 (673)
Q Consensus 580 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~ 659 (673)
....+. ++|++++++ + ||.|++|+.|++++ .+|+|++||++|++|++++++
T Consensus 529 -----~~~~~~----~~l~~~l~~-~-------------l~~~~~P~~i~~v~------~lP~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 529 -----PSDSLK----NELQDHVKN-V-------------TAPYKYPRIIEFVP------ELPKTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp -----CCHHHH----HHHHHHHHH-H-------------SCGGGCCSEEEEEC------C--------------------
T ss_pred -----CCHHHH----HHHHHHHHh-h-------------CCCccCCeEEEEeC------CCCCCCCcCCcHHHHHhHhhc
Confidence 112222 223333331 2 99999999999984 346999999999999998865
No 6
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=2.3e-73 Score=633.93 Aligned_cols=504 Identities=24% Similarity=0.295 Sum_probs=384.0
Q ss_pred CCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHH
Q 005867 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (673)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~l 119 (673)
...++.++|+++++++||++|+++. ++ +..+++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus 16 ~~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 90 (541)
T 1v25_A 16 EELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYF 90 (541)
T ss_dssp CCCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 3468999999999999999999864 21 123789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceec
Q 005867 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (673)
Q Consensus 120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 199 (673)
||+++|++++|+++.++.+++.++++.++++++|++......+.... ...+....++.++.... .....
T Consensus 91 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~ 159 (541)
T 1v25_A 91 AVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIR-GELKTVQHFVVMDEKAP----------EGYLA 159 (541)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHG-GGCSSCCEEEESSSCCC----------TTCEE
T ss_pred HHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHH-hhCCCccEEEEecCCCC----------ccccc
Confidence 99999999999999999999999999999999999987665443221 12233445555543211 02345
Q ss_pred HHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhh--hhhhccccCCCCCCcEEEEecchHh
Q 005867 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV--DLFLDQFEDKMTVDDVYLSFLPLAH 277 (673)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~--~~~~~~~~~~~~~~d~~l~~~p~~~ 277 (673)
+.+++..... .....++++++|+|||||||.||+|.++|++++...... ...+ +++.+|++++.+|++|
T Consensus 160 ~~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h 230 (541)
T 1v25_A 160 YEEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-----ALSEKDVVLPVVPMFH 230 (541)
T ss_dssp HHHHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-----CCCTTCEEEECSCTTS
T ss_pred HHHHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-----cCCCCCEEEEeccchh
Confidence 6655433211 134567899999999999999999999999998776542 2223 6788999999999999
Q ss_pred HHHHHHhHHHhhcCcEEEEecC--CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 005867 278 ILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355 (673)
Q Consensus 278 ~~gl~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (673)
.+++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+......
T Consensus 231 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------- 289 (541)
T 1v25_A 231 VNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG--------------------- 289 (541)
T ss_dssp HHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT---------------------
T ss_pred hhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC---------------------
Confidence 9998777788999999999874 89999999999999999999999999876432211
Q ss_pred hhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCC----
Q 005867 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE---- 431 (673)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~---- 431 (673)
..+++||.+++||+++++++.+.| +.+|+++++.||+||++.+++......
T Consensus 290 ------------------------~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~ 344 (541)
T 1v25_A 290 ------------------------HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLES 344 (541)
T ss_dssp ------------------------CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTT
T ss_pred ------------------------CcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccc
Confidence 112589999999999999999999 567999999999999998776554321
Q ss_pred ------ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhcc-CCccccCceEEEC
Q 005867 432 ------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQIL 504 (673)
Q Consensus 432 ------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~-~g~~~TGDlg~~~ 504 (673)
....+++|.|+++++++|+| +++...+.+.++.|||+|+||.++.||+++++.+.+.|. +|||+|||+|++|
T Consensus 345 ~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d 423 (541)
T 1v25_A 345 LSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWD 423 (541)
T ss_dssp SCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEEC
T ss_pred cCccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEc
Confidence 12347899999999999999 777666555557899999999999999999999999995 9999999999999
Q ss_pred CCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHH
Q 005867 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFL 581 (673)
Q Consensus 505 ~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~ 581 (673)
+||+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.....
T Consensus 424 ~dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~-------------- 488 (541)
T 1v25_A 424 EEGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKP-------------- 488 (541)
T ss_dssp TTCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC---------------------
T ss_pred CCceEEEeecccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCCC--------------
Confidence 99999999999999996 8999999999999999999999999997654 47888888762110
Q ss_pred HHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 005867 582 ELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 660 (673)
Q Consensus 582 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~ 660 (673)
+.+++++++.+ .+ ||.|++|+.|++++ .+|+|++||++|++|+++|.+.
T Consensus 489 ---~~~~l~~~~~~--------~~-------------L~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~~~~~~ 537 (541)
T 1v25_A 489 ---TPEELNEHLLK--------AG-------------FAKWQLPDAYVFAE------EIPRTSAGKFLKRALREQYKNY 537 (541)
T ss_dssp -----------------------C-------------CCTTTSCSBC--------------------CCTTHHHHSTTS
T ss_pred ---CHHHHHHHHHh--------cc-------------CccccCCcEEEEeC------CCCCCCccCeeHHHHHHHHHHh
Confidence 12222322222 13 99999999999883 3469999999999999987654
No 7
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=2.9e-72 Score=620.09 Aligned_cols=489 Identities=21% Similarity=0.247 Sum_probs=396.1
Q ss_pred CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (673)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA 120 (673)
|+|+.++|+++|+++||++|+++. ++. +++||+||.+++.++|++|++.|+++||+|+++++|++++++++||
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 73 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 578999999999999999999864 322 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEE--cchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCcee
Q 005867 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV--QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (673)
Q Consensus 121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 198 (673)
|+++|++++|+++.++.+++.++++.++++++|+ +......+.... .... ++
T Consensus 74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~----~~~~-~~--------------------- 127 (504)
T 1t5h_X 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG----SGAR-II--------------------- 127 (504)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC----CCCE-EE---------------------
T ss_pred HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc----ccce-eE---------------------
Confidence 9999999999999999999999999999999999 665444331111 1111 11
Q ss_pred cHHHHHhcCc----cCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCC--CCCcEEEEe
Q 005867 199 SWDEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSF 272 (673)
Q Consensus 199 ~~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~--~~~d~~l~~ 272 (673)
.+.++..... ..........++++++|+|||||||.||+|.++|+++.+.+......+ ++ ..++++++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~ 202 (504)
T 1t5h_X 128 FLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGL 202 (504)
T ss_dssp EGGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEEC
T ss_pred EecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEee
Confidence 1222221110 111111345689999999999999999999999999999888776655 55 788999999
Q ss_pred cchHhHHHHH-HhHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 005867 273 LPLAHILDRV-IEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 350 (673)
Q Consensus 273 ~p~~~~~gl~-~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (673)
+|++|.+|+. ..+.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+......
T Consensus 203 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------- 266 (504)
T 1t5h_X 203 MPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG---------------- 266 (504)
T ss_dssp SCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT----------------
T ss_pred cchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc----------------
Confidence 9999999985 46778999999999887 99999999999999999999999998865321000
Q ss_pred HHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCC
Q 005867 351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD 430 (673)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~ 430 (673)
. ...+++||.+++||+++++++.+.|.+.++..+++.||+||++.. ....
T Consensus 267 -------------------~--------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~-~~~~-- 316 (504)
T 1t5h_X 267 -------------------S--------SLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNS-LYMR-- 316 (504)
T ss_dssp -------------------C--------CCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEEE-EEEE--
T ss_pred -------------------c--------cccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccccccc-cccc--
Confidence 0 001258999999999999999999999999999999999999432 2221
Q ss_pred CccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEe-cCCccccccCCchhhhhhccCCccccCceEEECCCCcE
Q 005867 431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR-GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV 509 (673)
Q Consensus 431 ~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~-gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l 509 (673)
....+++|.|.+++++++++.+.+...+++.|+.|||+|+ |+.++.||+++++.+.+.|.+|||+|||+|++|+||++
T Consensus 317 -~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l 395 (504)
T 1t5h_X 317 -QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTV 395 (504)
T ss_dssp -SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCE
T ss_pred -CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCCceE
Confidence 1233789999999999999943333356777889999999 99999999999999999999999999999999999999
Q ss_pred EEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhcc
Q 005867 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL 586 (673)
Q Consensus 510 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (673)
+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+++++.. .+.
T Consensus 396 ~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~----------------~~~ 458 (504)
T 1t5h_X 396 RILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGET----------------LSA 458 (504)
T ss_dssp EEEEEGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCC----------------CCH
T ss_pred EEeCcccCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcC----------------cCH
Confidence 999999999997 8999999999999999999999999997654 47999999876420 022
Q ss_pred HHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 005867 587 VQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ 658 (673)
Q Consensus 587 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~ 658 (673)
++ |.++++.++ ||.|++|+.|++++ .+|+|++||++|++|+++|+
T Consensus 459 ~~--------l~~~~~~~~-------------L~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 459 DA--------LDTFCRSSE-------------LADFKRPKRYFILD------QLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp HH--------HHHHHHTSS-------------CCGGGSCSEEEECS------CCCBCTTSCBCHHHHHHHHC
T ss_pred HH--------HHHHHhhcc-------------CcccccceEEEEhh------hCCCCCCCCEeHHHHHHHhc
Confidence 22 333333224 99999999999984 34699999999999998874
No 8
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=1.1e-72 Score=629.96 Aligned_cols=525 Identities=24% Similarity=0.269 Sum_probs=334.9
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc
Q 005867 32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC 111 (673)
Q Consensus 32 ~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~ 111 (673)
.+.|..+....|+.++|.++++++||++|++... ++..+ +++||+||.++++++|++|++.|+++||+|+++++|+
T Consensus 10 ~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~ 85 (550)
T 3rix_A 10 GPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHIE--VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENS 85 (550)
T ss_dssp CCCCSSCCCCSCHHHHHHHHHHHHHTSTTCEEEE--ETTTC--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSC
T ss_pred CCCCCCCcccCCHHHHHHHHHHhCCCCceEEEee--ecCCC--cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCc
Confidence 3445566667899999999999999999986221 22111 6899999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHh
Q 005867 112 PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191 (673)
Q Consensus 112 ~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 191 (673)
+++++++|||+++|++++|+++.++.+++.++++.++++++|+++.....+.... ...+....++.++....
T Consensus 86 ~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------- 157 (550)
T 3rix_A 86 LQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQ-KKLPIIQKIIIMDSKTD------- 157 (550)
T ss_dssp TTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHH-HHCTTCCEEEETTCSSC-------
T ss_pred ccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHH-hhCCCcceEEEEcCCcc-------
Confidence 9999999999999999999999999999999999999999999998766654322 22334455555544321
Q ss_pred hCCCceecHHHHHhcCccC------CccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCC
Q 005867 192 QTGIKPYSWDEFLHLGKVN------EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV 265 (673)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~ 265 (673)
.....++.++....... ..+.....++++++|+|||||||.||+|.++|+++...+......+ ...++.+
T Consensus 158 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~ 233 (550)
T 3rix_A 158 --YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIP 233 (550)
T ss_dssp --BTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCT
T ss_pred --ccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhh--ccccCCC
Confidence 11244566655432211 1111223467899999999999999999999999998877655431 1125778
Q ss_pred CcEEEEecchHhHHHHHHhHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHH
Q 005867 266 DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344 (673)
Q Consensus 266 ~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~ 344 (673)
++++++.+|++|.+|+...+.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+...
T Consensus 234 ~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------- 300 (550)
T 3rix_A 234 DTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL------------- 300 (550)
T ss_dssp TCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCG-------------
T ss_pred CcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcc-------------
Confidence 9999999999999999888888999999999877 99999999999999999999999998865211
Q ss_pred HHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCc-eeeecCCCCCCCc
Q 005867 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-LVQGYGLTETCGP 423 (673)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~-v~~~YG~tE~~~~ 423 (673)
.+.. .+++||.+++||+++++++.+.|.+.++.. +++.||+||+++.
T Consensus 301 ------------------------~~~~--------~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~ 348 (550)
T 3rix_A 301 ------------------------IDKY--------DLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSA 348 (550)
T ss_dssp ------------------------GGGS--------CCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSE
T ss_pred ------------------------cccc--------CcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccc
Confidence 1111 125899999999999999999999999875 9999999999988
Q ss_pred ccccCCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCccccCceEE
Q 005867 424 TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQ 502 (673)
Q Consensus 424 ~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~ 502 (673)
++....... ..+++|.|+++++++|+| ++++ .+++.|+.|||+|+||+++.||+++++.+...| .+|||+|||+|+
T Consensus 349 ~~~~~~~~~-~~~~vG~~~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~ 425 (550)
T 3rix_A 349 ILITPEGDD-KPGAVGKVVPFFEAKVVD-LDTG-KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAY 425 (550)
T ss_dssp EEECCTTCC-CTTEEEEECTTCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEE
T ss_pred eecCCCCCC-CCCCcccccCCcEEEEEe-CCCC-cCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEE
Confidence 776655443 448999999999999999 4333 456677899999999999999999999999999 799999999999
Q ss_pred ECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCc
Q 005867 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGS 579 (673)
Q Consensus 503 ~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~ 579 (673)
+|+||+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++...
T Consensus 426 ~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~----------- 493 (550)
T 3rix_A 426 WDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTM----------- 493 (550)
T ss_dssp ECTTCCEEEC----------------------------------------------------------------------
T ss_pred EeCCceEEEEecchheeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCC-----------
Confidence 9999999999999999997 8999999999999999999999999997654 468888888764310
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeee-EEEEecCCCCCCCCccccccccchHHHHHHHH
Q 005867 580 FLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIK-GVILDPRPFDMERDLVTATLKKKRNKLLIYYQ 658 (673)
Q Consensus 580 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~-~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~ 658 (673)
+.+++++++.+. |+.|..|. .|+++ +.+|+|++||++|++|++++.
T Consensus 494 -----~~~~l~~~~~~~----------------------l~~~~~~~~~i~~v------~~lP~t~~GKi~r~~L~~~~~ 540 (550)
T 3rix_A 494 -----TEKEIVDYVASQ----------------------VTTAKKLRGGVVFV------DEVPKGLTGKLDARKIREILI 540 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----CHHHHHHHHHHh----------------------cccccccCCceEEE------eecCCCCCcceeHHHHHHHHH
Confidence 223333333332 88876554 57776 334699999999999999998
Q ss_pred HHHHHHH
Q 005867 659 VEIDQLY 665 (673)
Q Consensus 659 ~~~~~ly 665 (673)
+..+.-+
T Consensus 541 ~~~~~~~ 547 (550)
T 3rix_A 541 KAKKGGK 547 (550)
T ss_dssp -------
T ss_pred hhccccc
Confidence 7665543
No 9
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=1.1e-72 Score=628.81 Aligned_cols=500 Identities=15% Similarity=0.156 Sum_probs=333.5
Q ss_pred CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (673)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA 120 (673)
..||.++|+++|+++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 29 ~~tl~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 99 (544)
T 3o83_A 29 DQPLTRILTVGVQSHPHSLAIICG----E-----RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA 99 (544)
T ss_dssp CCCTTHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEcC----C-----CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 478999999999999999999964 3 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhh----hhhcccccccccceEEEEeCCCcHHHHHHHhhCCCc
Q 005867 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (673)
Q Consensus 121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 196 (673)
|+++|++++|+++.++.+++.++++.++++++|++..... ...............++..+....
T Consensus 100 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 167 (544)
T 3o83_A 100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT------------ 167 (544)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT------------
T ss_pred HHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc------------
Confidence 9999999999999999999999999999999999876431 111111112223344444443211
Q ss_pred eecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchH
Q 005867 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (673)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 276 (673)
...+.++...............++++++|+|||||||.||+|.++|+++.+.+......+ ++.++|++++.+|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 242 (544)
T 3o83_A 168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPAP 242 (544)
T ss_dssp SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCcc
Confidence 123444444432222233456789999999999999999999999999999999888777 789999999999999
Q ss_pred hHHHHHH--hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 005867 277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (673)
Q Consensus 277 ~~~gl~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (673)
|.+++.. .+.++..|+++++.+. ++..+++.++++++|+++++|+++..+++.......
T Consensus 243 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------ 304 (544)
T 3o83_A 243 HNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKD------------------ 304 (544)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHH------------------
T ss_pred eEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccc------------------
Confidence 9999874 6778999999999887 999999999999999999999999988764321111
Q ss_pred HHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCcc
Q 005867 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433 (673)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~ 433 (673)
. +++||.+++||+++++++.+.+.+.+|+++++.||+||++..+.........
T Consensus 305 -------------------~--------~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 357 (544)
T 3o83_A 305 -------------------Q--------IQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQ 357 (544)
T ss_dssp -------------------H--------HTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred -------------------c--------CCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhh
Confidence 1 1489999999999999999999999999999999999998655544333333
Q ss_pred ccCCcCCCc-cceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCccccCceEEECCCCcEEE
Q 005867 434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511 (673)
Q Consensus 434 ~~~~~G~~~-~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~ 511 (673)
...++|.|+ ++++++|+| +++. +++.|+.|||+|+||+++.||+++++.+...| .+|||+|||+|++|+||++++
T Consensus 358 ~~~~~G~p~~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~ 434 (544)
T 3o83_A 358 IFTTQGRPISSDDEIKIVD-EQYR--EVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRV 434 (544)
T ss_dssp HHHCCCEESCTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEE
T ss_pred ccCCCceecCCCcEEEEEC-CCCC--CCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEE
Confidence 447899996 899999999 6555 45667899999999999999999999999999 799999999999999999999
Q ss_pred eecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHH
Q 005867 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ 588 (673)
Q Consensus 512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (673)
+||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+..+... ...+
T Consensus 435 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~-----------------~~~~ 496 (544)
T 3o83_A 435 VGRIKDQINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPEL-----------------KAVV 496 (544)
T ss_dssp EEEEC---------------------------------------------------------------------------
T ss_pred EeecCCEEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCCC-----------------CHHH
Confidence 9999999996 8999999999999999999999999997654 37888888765321 2222
Q ss_pred HHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 005867 589 LQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV 659 (673)
Q Consensus 589 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~ 659 (673)
+++++.+ .+ ||.|++|+.|++++ .+|+|++||++|++|++++.+
T Consensus 497 l~~~~~~--------~~-------------l~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~~~~~ 540 (544)
T 3o83_A 497 LRRHLME--------LG-------------IAQYKLPDQIKLIE------SLPLTAVGKVDKKQLRSILNT 540 (544)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHh--------CC-------------CCcccCCcEEEEec------cCCCCCCCCCcHHHHHHHHhh
Confidence 3332222 23 99999999999883 346999999999999998865
No 10
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=1.3e-71 Score=620.53 Aligned_cols=510 Identities=24% Similarity=0.279 Sum_probs=408.9
Q ss_pred CCcHHH-HHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHH
Q 005867 41 LNTAWD-IFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (673)
Q Consensus 41 ~~tl~~-~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~l 119 (673)
+.++.+ +|..+++++ |++|+++. ++. +++||+||.++++++|.+|++.|+++||+|+++++|++++++++|
T Consensus 24 ~~~l~~~~l~~~~~~~-~~~A~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 95 (548)
T 2d1s_A 24 SAGTQLRKYMERYAKL-GAIAFTNA---VTG----VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVI 95 (548)
T ss_dssp CHHHHHHHHHHHHHHH-TCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHH
T ss_pred cCcHHHHHHHhhhccc-CCceEEEc---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Confidence 468999 898899999 99999863 221 589999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceec
Q 005867 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (673)
Q Consensus 120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 199 (673)
||+++|++++|+++.++.+++.++++.++++++|+++.....+.... ...+....++.++.... ......
T Consensus 96 a~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------~~~~~~ 165 (548)
T 2d1s_A 96 AGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQ-KTVTTIKTIVILDSKVD---------YRGYQC 165 (548)
T ss_dssp HHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHH-HHSTTCCEEEETTCSSC---------BTTBCB
T ss_pred HHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHh-cCCCCCCEEEEeCCccc---------cccccc
Confidence 99999999999999999999999999999999999987665543221 11121234444443210 001234
Q ss_pred HHHHHhcCccCCccCCCC------CCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEec
Q 005867 200 WDEFLHLGKVNEMEILPP------QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273 (673)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~------~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~ 273 (673)
|+++.........+.... .++++++++|||||||.||+|.++|+++.+.+......+. ..++.++|++++.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~ 243 (548)
T 2d1s_A 166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY--GNQVSPGTAVLTVV 243 (548)
T ss_dssp HHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTT--SCCCCTTCEEEECS
T ss_pred HHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhh--ccCCCccceEEEec
Confidence 666654431110111111 2389999999999999999999999999988877655410 11678899999999
Q ss_pred chHhHHHHHHh-HHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 005867 274 PLAHILDRVIE-EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY 351 (673)
Q Consensus 274 p~~~~~gl~~~-~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (673)
|++|.+++... +.++ .|+++++.+. ++..+++.++++++|+++++|+++..|.+...
T Consensus 244 p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------- 302 (548)
T 2d1s_A 244 PFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSEL-------------------- 302 (548)
T ss_dssp CTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSC--------------------
T ss_pred cHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcc--------------------
Confidence 99999998764 4556 9999999876 99999999999999999999999998764210
Q ss_pred HHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeecCCCCCCCcccccCCC
Q 005867 352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD 430 (673)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~ 430 (673)
.+.. .+++||.+++||+++++++.+.+.+.+ ++++++.||+||++..++.....
T Consensus 303 -----------------~~~~--------~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~ 357 (548)
T 2d1s_A 303 -----------------LNKY--------DLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEG 357 (548)
T ss_dssp -----------------GGGS--------CCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT
T ss_pred -----------------cccc--------cccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcc
Confidence 0111 125899999999999999999999988 68899999999999877664433
Q ss_pred CccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCccccCceEEECCCCcE
Q 005867 431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVV 509 (673)
Q Consensus 431 ~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l 509 (673)
....+++|.|+++++++|+|.+++ .+++.|+.|||+|+||.++.||+++++.+...| .+|||+|||+|++|+||++
T Consensus 358 -~~~~~~~G~~~~~~~~~i~d~~~~--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l 434 (548)
T 2d1s_A 358 -DDKPGASGKVVPLFKAKVIDLDTK--KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHF 434 (548)
T ss_dssp -CCCTTCCBEECTTCEEEEECTTTC--CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCE
T ss_pred -cCCCCCCCccCCCceEEEEeCCcC--ccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeE
Confidence 234489999999999999993333 456677899999999999999999999999999 6899999999999999999
Q ss_pred EEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhcc
Q 005867 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL 586 (673)
Q Consensus 510 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (673)
+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+++++.. .+.
T Consensus 435 ~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~----------------~~~ 497 (548)
T 2d1s_A 435 FIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKN----------------MTE 497 (548)
T ss_dssp EEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC----------------CCH
T ss_pred EEeccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCC----------------CCH
Confidence 999999999997 8999999999999999999999999997654 47889999876420 022
Q ss_pred HHHHHHHHHHHHHHHHhcccccccccccccccCccceeee-EEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHH
Q 005867 587 VQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIK-GVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQL 664 (673)
Q Consensus 587 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~-~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~~~l 664 (673)
+++++++++ + |+.|++|+ .|++++ .+|+|++||++|++|+++|.+.|+++
T Consensus 498 ~~l~~~~~~---------~-------------l~~~~~p~~~i~~v~------~lP~t~~GKi~r~~L~~~~~~~i~~~ 548 (548)
T 2d1s_A 498 KEVMDYVAS---------Q-------------VSNAKRLRGGVRFVD------EVPKGLTGKIDGRAIREILKKPVAKM 548 (548)
T ss_dssp HHHHHHHHT---------T-------------SCGGGSCTTCEEECS------SCCBCTTSCBCHHHHHHHHHSCC---
T ss_pred HHHHHHHHH---------h-------------ccccccccccEEEcc------CCCCCCcchhHHHHHHHHHhhhhhcC
Confidence 334433332 3 99999999 898883 34699999999999999998887764
No 11
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=4.2e-72 Score=618.07 Aligned_cols=491 Identities=23% Similarity=0.305 Sum_probs=398.0
Q ss_pred HHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHHHhcC
Q 005867 46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALS 125 (673)
Q Consensus 46 ~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~~~~G 125 (673)
++|+++++++|+++|+..... ++ +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~-~~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 77 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETA-AG-----DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEET-TC-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCCceEEEecC-CC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 578899999999999986411 22 589999999999999999999999999999999999999999999999999
Q ss_pred CeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecHHHHHh
Q 005867 126 LICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLH 205 (673)
Q Consensus 126 ~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (673)
++++|+++.++.+++.++++.++++++|++......+....... . ..+..+..... ..+.+...
T Consensus 78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~-------------~~~~~~~~ 141 (503)
T 4fuq_A 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV-G--ATVETLGPDGR-------------GSLTDAAA 141 (503)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH-T--CEEEECCTTSC-------------SHHHHHHH
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc-C--ceEEEecCCcc-------------cccchhhh
Confidence 99999999999999999999999999999987654332211111 1 12233322110 11222221
Q ss_pred cCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHHH-h
Q 005867 206 LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-E 284 (673)
Q Consensus 206 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~-~ 284 (673)
.. ..........++++++|+|||||||.||+|.++|+++.+.+......+ ++.++|++++.+|++|.+|+.. .
T Consensus 142 ~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~ 215 (503)
T 4fuq_A 142 GA-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVAS 215 (503)
T ss_dssp TS-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCH
T ss_pred cC-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHH
Confidence 11 122233456789999999999999999999999999999998887777 7899999999999999998764 5
Q ss_pred HHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCCcC
Q 005867 285 EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR 363 (673)
Q Consensus 285 ~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (673)
+.+++.|+++++.+. ++..+++.++ ++|+++++|+++..+++...
T Consensus 216 ~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~-------------------------------- 261 (503)
T 4fuq_A 216 NVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR-------------------------------- 261 (503)
T ss_dssp HHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--------------------------------
T ss_pred HHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--------------------------------
Confidence 678899999998887 9999999998 89999999999998764211
Q ss_pred CcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCccccCCcCCCcc
Q 005867 364 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 443 (673)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~ 443 (673)
.. ...++++|.+++||+++++++.+.|.+.+|.++++.||+||++..++... ......+++|+|++
T Consensus 262 -----~~--------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~ 327 (503)
T 4fuq_A 262 -----LT--------KETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALP 327 (503)
T ss_dssp -----CS--------TTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCS-SSCCCTTEEEEBCT
T ss_pred -----cc--------ccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCC-CCCCcCCccccCCC
Confidence 00 01125899999999999999999999999999999999999987755333 23344588999999
Q ss_pred ceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCccccCceEEECCCCcEEEeecCCCeEEcC
Q 005867 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522 (673)
Q Consensus 444 ~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~ 522 (673)
+++++|+| ++.+ .+++.|+.|||+|+||+++.||+++++.+.+.| .+|||+|||+|++|+||.++++||.||+||+
T Consensus 328 ~~~~~i~d-~~~g-~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~- 404 (503)
T 4fuq_A 328 GVSARVTD-PETG-KELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVIT- 404 (503)
T ss_dssp TCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEE-
T ss_pred CeEEEEEE-CCCC-CCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEE-
Confidence 99999999 3333 456677899999999999999999999999999 5899999999999999999999999999997
Q ss_pred CceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHH
Q 005867 523 QGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKN 599 (673)
Q Consensus 523 ~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 599 (673)
+|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++.. .+..++++++++
T Consensus 405 ~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~----------------~~~~~l~~~l~~---- 464 (503)
T 4fuq_A 405 GGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGAT----------------IDEAQVLHGLDG---- 464 (503)
T ss_dssp TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC----------------CCHHHHHHHHBT----
T ss_pred CCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCC----------------CCHHHHHHHHHh----
Confidence 7999999999999999999999999986644 37889998876431 022233333322
Q ss_pred HHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 005867 600 AAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV 659 (673)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~ 659 (673)
+ ||.|++|+.|++++ .+|+|++||++|++|+++|++
T Consensus 465 -----~-------------L~~~~~P~~i~~v~------~lP~t~~GKi~R~~L~~~~~~ 500 (503)
T 4fuq_A 465 -----Q-------------LAKFKMPKKVIFVD------DLPRNTMGKVQKNVLRETYKD 500 (503)
T ss_dssp -----T-------------BCGGGCCSEEEEES------CCCBCTTSCBCHHHHHHHTTT
T ss_pred -----h-------------cccCCCCCEEEEEC------CCCCCcccceeHHHHHHHHHH
Confidence 3 99999999999983 346999999999999998865
No 12
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=1.8e-71 Score=630.93 Aligned_cols=524 Identities=17% Similarity=0.191 Sum_probs=414.6
Q ss_pred CCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHH
Q 005867 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (673)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~l 119 (673)
..+++.++|+++++++||++|+++. +...+..+++||+||.++++++|++|++.|+++||+|+|+++|++++++++|
T Consensus 74 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~l 150 (652)
T 1pg4_A 74 TLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAML 150 (652)
T ss_dssp EECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHH
T ss_pred ChhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3578999999999999999999985 3333445789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhh---------hhhcccccc-cccceEEEEeCCCcHHHHHH
Q 005867 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRS-AQRLRVMVCFTSLTAEQKEM 189 (673)
Q Consensus 120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~ 189 (673)
||+++|++++|+++.++.+++.+++++++++++|+++.... .+....... ...+..++.++......
T Consensus 151 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~--- 227 (652)
T 1pg4_A 151 ACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI--- 227 (652)
T ss_dssp HHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC---
T ss_pred HHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcc---
Confidence 99999999999999999999999999999999999876421 111111000 01234455554321000
Q ss_pred HhhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHh-hhhhhhccccCCCCCCcE
Q 005867 190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS-GVDLFLDQFEDKMTVDDV 268 (673)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~-~~~~~~~~~~~~~~~~d~ 268 (673)
.........|++++..... ........++++++|+|||||||.||||+++|++++..+. .....+ ++.++|+
T Consensus 228 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~ 300 (652)
T 1pg4_A 228 -DWQEGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDI 300 (652)
T ss_dssp -CCCBTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCE
T ss_pred -cccCCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-----CCCCCCE
Confidence 0001123567777654321 1223345689999999999999999999999999887664 333444 7889999
Q ss_pred EEEecchHhHHHHH-HhHHHhhcCcEEEEecC-----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHH
Q 005867 269 YLSFLPLAHILDRV-IEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342 (673)
Q Consensus 269 ~l~~~p~~~~~gl~-~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~ 342 (673)
+++.+|++|..|+. .++.++..|+++++++. ++..+++.++++++|+++++|+++..|.+...+.
T Consensus 301 ~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--------- 371 (652)
T 1pg4_A 301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA--------- 371 (652)
T ss_dssp EEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGG---------
T ss_pred EEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccc---------
Confidence 99999999999984 57788999999999874 7899999999999999999999999876421100
Q ss_pred HHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcC---CceeeecCCCC
Q 005867 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTE 419 (673)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g---~~v~~~YG~tE 419 (673)
.+. ..+++||.+++||+++++++.+++.+.+| +++++.||+||
T Consensus 372 --------------------------~~~--------~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE 417 (652)
T 1pg4_A 372 --------------------------IEG--------TDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE 417 (652)
T ss_dssp --------------------------TTT--------CCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGG
T ss_pred --------------------------ccc--------CCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcc
Confidence 000 12359999999999999999999999888 89999999999
Q ss_pred CCCcccccCCC-CccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEec--CCccccccCCchhhhhhc---cCC
Q 005867 420 TCGPTTVCFPD-EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDG 493 (673)
Q Consensus 420 ~~~~~~~~~~~-~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~g--p~~~~gy~~~~~~~~~~~---~~g 493 (673)
+++.++....+ .....+++|+|++|++++|+| +++. +++.|+.|||+|+| |+++.|||++++.+...| .+|
T Consensus 418 ~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~--~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g 494 (652)
T 1pg4_A 418 TGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGH--PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKN 494 (652)
T ss_dssp GSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCC--BCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTT
T ss_pred cccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCC--CcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCC
Confidence 99876655432 234458999999999999999 6555 45556899999999 789999999999988876 379
Q ss_pred ccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHH
Q 005867 494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKW 570 (673)
Q Consensus 494 ~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~ 570 (673)
||+|||+|++|+||+|+|+||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+++++..
T Consensus 495 ~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~--- 570 (652)
T 1pg4_A 495 MYFSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEE--- 570 (652)
T ss_dssp SEEEEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC---
T ss_pred EEECCcEEEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCC---
Confidence 9999999999999999999999999998 7999999999999999999999999997643 47999999886531
Q ss_pred HHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccch
Q 005867 571 AYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKR 650 (673)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R 650 (673)
..+++. ++|++++++ + ||.|++|+.|++++ .+|+|++||++|
T Consensus 571 --------------~~~~~~----~~l~~~l~~-~-------------l~~~~~P~~i~~v~------~lP~T~sGKi~R 612 (652)
T 1pg4_A 571 --------------PSPELY----AEVRNWVRK-E-------------IGPLATPDVLHWTD------SLPKTRSGKIMR 612 (652)
T ss_dssp --------------CCHHHH----HHHHHHHHH-H-------------TCGGGCCSEEEECS------CCCBCTTSCBCH
T ss_pred --------------CCHHHH----HHHHHHHHH-h-------------CCCCcCCeEEEEcC------CCCCCCCccchH
Confidence 111222 223333331 2 99999999999983 346999999999
Q ss_pred HHHHHHHHHHHHHH
Q 005867 651 NKLLIYYQVEIDQL 664 (673)
Q Consensus 651 ~~l~~~~~~~~~~l 664 (673)
++|++.+.++++.+
T Consensus 613 ~~L~~~~~~~~~~~ 626 (652)
T 1pg4_A 613 RILRKIAAGDTSNL 626 (652)
T ss_dssp HHHHHHHHTC----
T ss_pred HHHHHHHhCCCCCC
Confidence 99999998765444
No 13
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=2.3e-70 Score=612.45 Aligned_cols=510 Identities=19% Similarity=0.195 Sum_probs=411.7
Q ss_pred CCCCCcHHHHHHHHHHh-----CCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCc
Q 005867 38 DSDLNTAWDIFSMSVQK-----YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANC 111 (673)
Q Consensus 38 ~~~~~tl~~~l~~~a~~-----~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~-gv~~gd~V~i~~~~~ 111 (673)
+..++++.++|++++++ +||++|+++. ++ .+..+++||+||.++++++|++|++. |+++||+|+++++|+
T Consensus 34 ~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~ 109 (570)
T 3c5e_A 34 PAKFNFASDVLDHWADMEKAGKRPPSPALWWV---NG-KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRV 109 (570)
T ss_dssp CSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CS-SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSC
T ss_pred CccccHHHHHHHHHHhhccccCCCCceEEEEE---cC-CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCC
Confidence 34567889999999999 9999999975 42 12237899999999999999999998 999999999999999
Q ss_pred HhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHh
Q 005867 112 PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191 (673)
Q Consensus 112 ~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 191 (673)
+++++++|||+++|++++|+++.++.+++.++++.++++++|+++.....+.... ...+.++.++.++....
T Consensus 110 ~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------- 181 (570)
T 3c5e_A 110 PEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVA-SECPSLRIKLLVSEKSC------- 181 (570)
T ss_dssp HHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHG-GGCTTCCEEEEESSSCC-------
T ss_pred HHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHh-hcCCceeEEEEecccCc-------
Confidence 9999999999999999999999999999999999999999999987665543221 12233444555543210
Q ss_pred hCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHH--HHhhhhhhhccccCCCCCCcEE
Q 005867 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT--FVSGVDLFLDQFEDKMTVDDVY 269 (673)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~--~~~~~~~~~~~~~~~~~~~d~~ 269 (673)
.....+.+++..... ........++++++|+|||||||.||+|.++|+ ++. ..... ..+ ++..+|++
T Consensus 182 ---~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-----~~~~~d~~ 250 (570)
T 3c5e_A 182 ---DGWLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-----GLQASDIM 250 (570)
T ss_dssp ---TTSEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-----SCCTTCEE
T ss_pred ---cccccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-----CCCCCceE
Confidence 123456666554322 122234578999999999999999999999999 444 33332 334 68899999
Q ss_pred EEecchHhHHHHH-HhHHHhhcCcEEEEecC---CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHH
Q 005867 270 LSFLPLAHILDRV-IEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF 345 (673)
Q Consensus 270 l~~~p~~~~~gl~-~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~ 345 (673)
++.+|++|.+++. .++.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+..
T Consensus 251 ~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~--------------- 315 (570)
T 3c5e_A 251 WTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD--------------- 315 (570)
T ss_dssp EECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC---------------
T ss_pred EEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc---------------
Confidence 9999999999987 46778999999998863 8999999999999999999999999875420
Q ss_pred HHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCccc
Q 005867 346 DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTT 425 (673)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~ 425 (673)
.+ ...+++||.+++||+++++++.+.|.+.+|+++++.||+||++..++
T Consensus 316 -----------------------~~--------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~ 364 (570)
T 3c5e_A 316 -----------------------LS--------SYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCM 364 (570)
T ss_dssp -----------------------TT--------TCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEE
T ss_pred -----------------------cc--------ccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhccccee
Confidence 00 01125899999999999999999999988999999999999997665
Q ss_pred ccCCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEe-----cCCccccccCCchhhhhhccCCccccCce
Q 005867 426 VCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR-----GKTLFSGYYKNPDLTRESIIDGWFHTGDI 500 (673)
Q Consensus 426 ~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~-----gp~~~~gy~~~~~~~~~~~~~g~~~TGDl 500 (673)
..... ....+++|.|+++++++|+| +++. +++.|+.|||+|+ |++++.||+++++.+.+.|.+|||+|||+
T Consensus 365 ~~~~~-~~~~~~vG~p~~~~~v~i~d-~~g~--~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDl 440 (570)
T 3c5e_A 365 VSKTM-KIKPGYMGTAASCYDVQIID-DKGN--VLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDR 440 (570)
T ss_dssp CCTTS-CCCTTCCCEECTTCCEEEEC-TTSC--BCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEE
T ss_pred cCccc-ccCCCcccccCCCceEEEEC-CCCC--CCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCcccccee
Confidence 44332 23448999999999999999 6654 5566789999999 99999999999999999999999999999
Q ss_pred EEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCC
Q 005867 501 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHA 577 (673)
Q Consensus 501 g~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~ 577 (673)
|++|+||+|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++...
T Consensus 441 g~~d~dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~--------- 510 (570)
T 3c5e_A 441 GIKDEDGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLS--------- 510 (570)
T ss_dssp EEECTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTT---------
T ss_pred EEEcCCceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccC---------
Confidence 999999999999999999997 8999999999999999999999999997654 478899998764310
Q ss_pred CcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 005867 578 GSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY 657 (673)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~ 657 (673)
. ....+ .++|+++++ ++ ||.|++|+.|++++. +|+|++||++|++|++.+
T Consensus 511 ~------~~~~~----~~~l~~~l~-~~-------------L~~~~~P~~i~~v~~------lP~t~~GKi~R~~L~~~~ 560 (570)
T 3c5e_A 511 H------DPEQL----TKELQQHVK-SV-------------TAPYKYPRKIEFVLN------LPKTVTGKIQRAKLRDKE 560 (570)
T ss_dssp S------CHHHH----HHHHHHHHH-HH-------------SCGGGSCSEEEEESC------CCBCTTCCBCHHHHHHHH
T ss_pred c------chHHH----HHHHHHHHH-hh-------------CccccCCcEEEEecc------CCCCCCcCCcHHHHHHHH
Confidence 0 11112 233333333 23 999999999999843 469999999999999887
Q ss_pred HHH
Q 005867 658 QVE 660 (673)
Q Consensus 658 ~~~ 660 (673)
.+.
T Consensus 561 ~~~ 563 (570)
T 3c5e_A 561 WKM 563 (570)
T ss_dssp TC-
T ss_pred Hhh
Confidence 543
No 14
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1.2e-71 Score=616.04 Aligned_cols=494 Identities=22% Similarity=0.265 Sum_probs=326.1
Q ss_pred CCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHH
Q 005867 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (673)
Q Consensus 39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~ 118 (673)
....||.++|+++|+++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 3 ~~~~tl~~~l~~~a~~~pd~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~ 73 (509)
T 3ivr_A 3 LHDFTLADVYRRNAALFPDRTAFMVD----G-----VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELI 73 (509)
T ss_dssp TTCCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHCCCceEEEEC----C-----cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 35689999999999999999999874 3 68999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCcee
Q 005867 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (673)
Q Consensus 119 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 198 (673)
|||+++|++++|+++.++.+++.++++.++++++|++......+.... ........++.+++.. .
T Consensus 74 lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------------~ 138 (509)
T 3ivr_A 74 GAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVL-PSLGGVKKAYAIGDGS--------------G 138 (509)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHG-GGCSSCCEEEESSCCC--------------S
T ss_pred HHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhh-cccCCceEEEEcCCCC--------------c
Confidence 999999999999999999999999999999999999988766533322 2333445555554321 1
Q ss_pred cHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhH
Q 005867 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (673)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~ 278 (673)
.+.++...............++++++|+|||||||.||+|.++|+++.+.+......+ ++.++|++++.+|++|.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~ 213 (509)
T 3ivr_A 139 PFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHV 213 (509)
T ss_dssp SCEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSH
T ss_pred ChhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcch
Confidence 2222222121223334456789999999999999999999999999999998887777 78999999999999999
Q ss_pred HHHHHhHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhh
Q 005867 279 LDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN 357 (673)
Q Consensus 279 ~gl~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (673)
+++...+.++..|++.++... ++..+++.++++++|+++++|+++..+++...
T Consensus 214 ~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-------------------------- 267 (509)
T 3ivr_A 214 TGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA-------------------------- 267 (509)
T ss_dssp HHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC--------------------------
T ss_pred hHHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc--------------------------
Confidence 999887776555555555445 99999999999999999999999998865320
Q ss_pred hcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeecCCCCCCCcccccCCCCccccC
Q 005867 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVG 436 (673)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~~~~~~~ 436 (673)
. ..++++|.++.+|++ +..+.+.+.+ ++++++.||+||++++++....... ..
T Consensus 268 -------------~--------~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~--~~ 321 (509)
T 3ivr_A 268 -------------P--------AQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRDR--PK 321 (509)
T ss_dssp -------------G--------GGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGGS--TT
T ss_pred -------------c--------cchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccccC--CC
Confidence 0 011489999999987 8888888888 8999999999999987666543322 24
Q ss_pred CcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCCCcEEEeecC-
Q 005867 437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK- 515 (673)
Q Consensus 437 ~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~- 515 (673)
++|.|+++++++|+| +++. +++.|+.|||+|+||+++.||+++++.+.+.|.+|||+|||+|++++||+++++||.
T Consensus 322 ~~G~p~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d 398 (509)
T 3ivr_A 322 SAGRPLFWRTVAVVD-AEDR--PLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAP 398 (509)
T ss_dssp SCCEECTTCEEEEEC-TTSC--BCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC-
T ss_pred cccccCCCcEEEEEC-CCCC--CCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCC
Confidence 699999999999999 6554 556678999999999999999999999999999999999999999999999999999
Q ss_pred -CCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHH
Q 005867 516 -KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQN 591 (673)
Q Consensus 516 -~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (673)
+|+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++... +..++++
T Consensus 399 ~~d~ik~-~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~----------------~~~~l~~ 461 (509)
T 3ivr_A 399 EKELIKT-GGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESI----------------AADALAE 461 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cceeEEE-CCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCC----------------CHHHHHH
Confidence 999996 8999999999999999999999999987754 368888888764310 2233333
Q ss_pred HHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 005867 592 YILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI 661 (673)
Q Consensus 592 ~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~ 661 (673)
++++. ||.|++|+.|++++ .+|+|++||++|++|++++.+.-
T Consensus 462 ~l~~~----------------------L~~~~~P~~i~~v~------~lP~t~~GKidr~~Lr~~~~~~~ 503 (509)
T 3ivr_A 462 FVASL----------------------IARYKKPKHVVFVE------ALPKDAKGAIDRAAVKTAHGQEG 503 (509)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHhh----------------------CcccCCCcEEEEec------CCCCCCCCCccHHHHHHHHhhcc
Confidence 33332 99999999999883 34699999999999999987643
No 15
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=9.6e-71 Score=625.15 Aligned_cols=532 Identities=18% Similarity=0.196 Sum_probs=410.6
Q ss_pred CCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCcHhHHHHH
Q 005867 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEAM 118 (673)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~-~~gv~~gd~V~i~~~~~~e~~~~~ 118 (673)
..|++.++|+++++++||++|+++. +...+..+++||+||.+++.++|++|+ +.|+++||+|+|+++|++++++++
T Consensus 80 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~ 156 (663)
T 1ry2_A 80 QLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITL 156 (663)
T ss_dssp EECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHH
T ss_pred CccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHH
Confidence 4589999999999999999999985 333344579999999999999999999 899999999999999999999999
Q ss_pred HHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhh--------hhcccccccccceEEEEeCCCcHHHHHHH
Q 005867 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE--------LLSPDCRSAQRLRVMVCFTSLTAEQKEMA 190 (673)
Q Consensus 119 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 190 (673)
|||+++|++++|+++.++.+++.++|++++++++|+++..... .........+.+..+++++...... .
T Consensus 157 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~---~ 233 (663)
T 1ry2_A 157 LAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPS---V 233 (663)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSS---C
T ss_pred HHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCc---c
Confidence 9999999999999999999999999999999999998764321 1111111223344555554321000 0
Q ss_pred hhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhh-hhhhhccccCCCCCCcEE
Q 005867 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVY 269 (673)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~d~~ 269 (673)
.........|.++..... ......+..++++++|+|||||||.||||+++|++++..+.. ....+ ++.++|++
T Consensus 234 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~ 307 (663)
T 1ry2_A 234 AFHAPRDLDWATEKKKYK-TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDVF 307 (663)
T ss_dssp CCCSSSEEEHHHHHTTSC-SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCEE
T ss_pred ccCCCccccHHHHHhhcC-CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-----CCCCCcEE
Confidence 000112356777765432 222334557899999999999999999999999998876643 33344 78899999
Q ss_pred EEecchHhHHHHH-HhHHHhhcCcEEEEecC-----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHH
Q 005867 270 LSFLPLAHILDRV-IEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR 343 (673)
Q Consensus 270 l~~~p~~~~~gl~-~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~ 343 (673)
++.+|++|..++. .++.++..|+++++++. ++..+++.|+++++|+++++|+++..|.+...+
T Consensus 308 ~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~----------- 376 (663)
T 1ry2_A 308 FTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDS----------- 376 (663)
T ss_dssp EECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTT-----------
T ss_pred EEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCcc-----------
Confidence 9999999999984 56788999999999874 789999999999999999999999887531100
Q ss_pred HHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcC---CceeeecCCCCC
Q 005867 344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTET 420 (673)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g---~~v~~~YG~tE~ 420 (673)
..+. ..+++||.+++||+++++++.+++.+.+| +++++.||+||+
T Consensus 377 ------------------------~~~~--------~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~ 424 (663)
T 1ry2_A 377 ------------------------YIEN--------HSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTES 424 (663)
T ss_dssp ------------------------SSSS--------CCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTT
T ss_pred ------------------------cccc--------CCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccc
Confidence 0000 11259999999999999999999999888 899999999999
Q ss_pred CCcccccCC--CCccccCCcCCCccceeEEEeecC-CCCCCCCCC-CCCceEEEec--CCccccccCCchhhhhhc---c
Q 005867 421 CGPTTVCFP--DEMCMVGTAGPVSVYSELRLEEVP-EMGYSPLDD-PPCGEVCVRG--KTLFSGYYKNPDLTRESI---I 491 (673)
Q Consensus 421 ~~~~~~~~~--~~~~~~~~~G~~~~~~~v~i~~~~-~~~~~~~~~-g~~GEl~v~g--p~~~~gy~~~~~~~~~~~---~ 491 (673)
++.++.... ......+++|.|++|++++|+| + ++. +++. |+.|||+|+| |+++.|||++++.+.+.| .
T Consensus 425 ~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~--~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~ 501 (663)
T 1ry2_A 425 GSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGE--ELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPY 501 (663)
T ss_dssp CSCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTT--CEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSS
T ss_pred cCeeeccCCCCCcccCCCccccCcCCCeEEEEc-CCCCC--cCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCC
Confidence 977665543 2234458999999999999999 5 444 3344 6789999999 589999999999998887 3
Q ss_pred CCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHH
Q 005867 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTK 568 (673)
Q Consensus 492 ~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~ 568 (673)
+|||+|||+|++|+||+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+++++...
T Consensus 502 ~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~ 580 (663)
T 1ry2_A 502 PGYYFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSW 580 (663)
T ss_dssp TTSEEEEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC-----
T ss_pred CCEEEcCCEEEEcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCcc
Confidence 799999999999999999999999999997 7999999999999999999999999997754 479999999875310
Q ss_pred HHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCcccccccc
Q 005867 569 KWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKK 648 (673)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv 648 (673)
. . . ..+ ..+.+.++|++++++ + ||+|++|+.|++++ .+|+|++||+
T Consensus 581 ~--~-------~----~~~-~~~~l~~~l~~~l~~-~-------------L~~~~~P~~i~~v~------~lP~T~sGKi 626 (663)
T 1ry2_A 581 S--T-------A----TDD-ELQDIKKHLVFTVRK-D-------------IGPFAAPKLIILVD------DLPKTRSGKI 626 (663)
T ss_dssp ---------------------CCSHHHHHHHHHHH-H-------------TCTTTSCSEEEECS------CCCBCTTSCB
T ss_pred c--c-------c----cch-hHHHHHHHHHHHHHH-h-------------CCCCcCCeEEEEcC------CCCCCCccCc
Confidence 0 0 0 000 000122333333332 3 99999999999983 3469999999
Q ss_pred chHHHHHHHHHHHHHH
Q 005867 649 KRNKLLIYYQVEIDQL 664 (673)
Q Consensus 649 ~R~~l~~~~~~~~~~l 664 (673)
+|++|++.+.++++++
T Consensus 627 ~R~~L~~~~~~~~~~~ 642 (663)
T 1ry2_A 627 MRRILRKILAGESDQL 642 (663)
T ss_dssp CHHHHHHSCC------
T ss_pred hHHHHHHHHcCCCCCC
Confidence 9999999987765544
No 16
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=4.1e-70 Score=603.98 Aligned_cols=487 Identities=18% Similarity=0.215 Sum_probs=402.8
Q ss_pred CcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCcHhHHHHHHH
Q 005867 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEA 120 (673)
Q Consensus 42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~-gv~~gd~V~i~~~~~~e~~~~~lA 120 (673)
+||.++|+++|+++||++|+++. + +++||+||.++++++|++|.+. |.++|++|+++++|++++++++||
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA 71 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ----G-----QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence 47899999999999999999864 3 6899999999999999999875 888999999999999999999999
Q ss_pred HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecH
Q 005867 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (673)
Q Consensus 121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 200 (673)
|+++|++++|+++.++.+++.++++.++++++|+++........ . .....++
T Consensus 72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~-------~---------------------~~~~~~~ 123 (511)
T 3e7w_A 72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVG-------Q---------------------QIQTVSA 123 (511)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCC-------C---------------------SSCEEEH
T ss_pred HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhcc-------c---------------------ccceecH
Confidence 99999999999999999999999999999999997643211100 0 0123345
Q ss_pred HHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHH
Q 005867 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (673)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g 280 (673)
.++...............++++++|+|||||||.||+|.++|+++.+.+......+ ++..++++++.+|++|.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 198 (511)
T 3e7w_A 124 EELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLS 198 (511)
T ss_dssp HHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHH
T ss_pred hhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHH
Confidence 55554433333333445789999999999999999999999999999998887776 7889999999999999999
Q ss_pred HHHhHHHhhcCcEEEEecC----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHh
Q 005867 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (673)
Q Consensus 281 l~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (673)
+...+.++..|+++++.+. ++..+++.++++++|+++++|+++..++....
T Consensus 199 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 253 (511)
T 3e7w_A 199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG------------------------- 253 (511)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT-------------------------
T ss_pred HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc-------------------------
Confidence 8888889999999998874 78999999999999999999999988754210
Q ss_pred hhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeecCCCCCCCcccccCCCC----
Q 005867 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---- 431 (673)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~~---- 431 (673)
.. ...++++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++......
T Consensus 254 ------------~~--------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 313 (511)
T 3e7w_A 254 ------------FS--------QDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVIS 313 (511)
T ss_dssp ------------CS--------TTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHT
T ss_pred ------------cc--------cccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccc
Confidence 00 01225899999999999999999999988 899999999999998766543322
Q ss_pred ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc--cCC--ccccCceEEECCCC
Q 005867 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDG--WFHTGDIGQILPNG 507 (673)
Q Consensus 432 ~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~--~~g--~~~TGDlg~~~~~G 507 (673)
.....++|.|+++++++|+| +++. +++.|+.|||+|+||.++.||+++++.+.+.| .+| ||+|||+|++ +||
T Consensus 314 ~~~~~~~G~~~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG 389 (511)
T 3e7w_A 314 RSESLPVGFAKPDMNIFIMD-EEGQ--PLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDG 389 (511)
T ss_dssp TCSSCCCBEECTTCEEEEEC-TTSC--BCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETT
T ss_pred cCCcCCCcceeCCCEEEEEC-CCCC--CCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCC
Confidence 12235799999999999999 6554 55667899999999999999999999999998 344 7999999999 599
Q ss_pred cEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHh
Q 005867 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC 584 (673)
Q Consensus 508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~ 584 (673)
+++++||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++.. .
T Consensus 390 ~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~----------~------ 452 (511)
T 3e7w_A 390 QIFCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEF----------E------ 452 (511)
T ss_dssp EEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCC----------S------
T ss_pred eEEEEccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccc----------c------
Confidence 99999999999997 8999999999999999999999999986544 47899999876431 0
Q ss_pred ccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 005867 585 SLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 660 (673)
Q Consensus 585 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~ 660 (673)
...++. ++|++++++ + ||.|++|+.+++++ .+|+|++||++|++|++++.+.
T Consensus 453 ~~~~~~----~~l~~~l~~-~-------------L~~~~~P~~~~~v~------~lP~t~~GKi~R~~L~~~~~~~ 504 (511)
T 3e7w_A 453 KEFQLT----SAIKKELAA-S-------------LPAYMIPRKFIYQD------HIQMTANGKIDRKRIGEEVLVR 504 (511)
T ss_dssp SHHHHH----HHHHHHHHH-H-------------SCGGGSCSEEEECS------CCCBCTTSCBCHHHHHHHHHHH
T ss_pred chhhHH----HHHHHHHHh-h-------------CchhhCCeeEEEec------cCCCCCCcCccHHHHHhHHhhh
Confidence 111222 233333331 2 99999999999983 3469999999999999998763
No 17
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=5.4e-71 Score=618.68 Aligned_cols=479 Identities=20% Similarity=0.189 Sum_probs=316.6
Q ss_pred CCCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHH
Q 005867 38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA 117 (673)
Q Consensus 38 ~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~ 117 (673)
.....+|.++|+++|+++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|+++++++
T Consensus 71 ~~~~~~l~~~l~~~a~~~pd~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~ 141 (570)
T 4gr5_A 71 APAGACVHELFEAQAARAPDAVALLHE----A-----DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVA 141 (570)
T ss_dssp CCCSCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred CCccCCHHHHHHHHHHHCCCCeEEECC----C-----CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHH
Confidence 345689999999999999999999874 3 5899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCce
Q 005867 118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197 (673)
Q Consensus 118 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 197 (673)
+|||+++|++++|+++.++.+++.++++.++++++|++......+. ....+...+...
T Consensus 142 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~~~~-------------- 199 (570)
T 4gr5_A 142 LLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLT--------GTTTLYVEDEAA-------------- 199 (570)
T ss_dssp HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSC--------SSEEEECCC-----------------
T ss_pred HHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhccc--------CCcceeeecccc--------------
Confidence 9999999999999999999999999999999999999986543321 111121111100
Q ss_pred ecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHh
Q 005867 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277 (673)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~ 277 (673)
.............++++++|+|||||||.||||+++|+++.+.+... ..+ ++.+++++++.+|++|
T Consensus 200 --------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~~~-----~~~~~d~~l~~~p~~~ 265 (570)
T 4gr5_A 200 --------SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ-DYA-----GFGPDEVFLQCSPVSW 265 (570)
T ss_dssp ------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSSC-CSS-----CCSTTCEEEECSCTTS
T ss_pred --------ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHhh-hhc-----CCCCCCEEEEecCccH
Confidence 00011122334578999999999999999999999999998776552 222 6788999999999998
Q ss_pred HHHHHHhHHHhhcCcEEEEecC---CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 005867 278 ILDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (673)
Q Consensus 278 ~~gl~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (673)
..+...++.+++.|+++++.+. ++..+++.++++++|++.++|+++..|.+....
T Consensus 266 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---------------------- 323 (570)
T 4gr5_A 266 DAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE---------------------- 323 (570)
T ss_dssp STHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG----------------------
T ss_pred HHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh----------------------
Confidence 7777677888999999999864 899999999999999999999999988653110
Q ss_pred HhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeecCCCCCCCcccccCCCC--
Q 005867 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-- 431 (673)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~~-- 431 (673)
.+++||.+++||+++++++.+.+.+.+ ++++++.||+||++++++......
T Consensus 324 --------------------------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~ 377 (570)
T 4gr5_A 324 --------------------------AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGD 377 (570)
T ss_dssp --------------------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGG
T ss_pred --------------------------hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccc
Confidence 014899999999999999988888877 799999999999988766544322
Q ss_pred -ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhcc-C--------CccccCceE
Q 005867 432 -MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-D--------GWFHTGDIG 501 (673)
Q Consensus 432 -~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~-~--------g~~~TGDlg 501 (673)
.....++|+|+++++++|+| +++. +++.|+.|||+|+||+++.||+++++.+.+.|. + |||+|||+|
T Consensus 378 ~~~~~~~iG~p~~~~~v~i~d-~~~~--~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg 454 (570)
T 4gr5_A 378 LSGTALPIGVPLAGKRAYVLD-DDLK--PAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLA 454 (570)
T ss_dssp TTSSSCCCBEECTTEEEEEEC-TTSC--BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEE
T ss_pred cCCCccccceeeCCCEEEEEC-CCCC--CCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeE
Confidence 22235799999999999999 6554 555678999999999999999999999999983 3 699999999
Q ss_pred EECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCC
Q 005867 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAG 578 (673)
Q Consensus 502 ~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~ 578 (673)
++|+||+|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++......
T Consensus 455 ~~d~dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~---------- 523 (570)
T 4gr5_A 455 RRRADGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAP---------- 523 (570)
T ss_dssp EECTTSCEEEEEC-------------------------------------------------------------------
T ss_pred EECCCCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCC----------
Confidence 99999999999999999997 8999999999999999999999999997644 478888887653210
Q ss_pred cHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 005867 579 SFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY 656 (673)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~ 656 (673)
.+.+++++++++. ||.|++|+.+++++ .+|+|++||++|++|++.
T Consensus 524 -----~~~~~l~~~l~~~----------------------l~~~~~P~~i~~v~------~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 524 -----PDAAELRRHVAEA----------------------LPAYMVPVECVPVD------ELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred -----cCHHHHHHHHHhh----------------------CccccCCcEEEEcc------cCCCCCCcCcchHhhhcc
Confidence 0223333333332 99999999999873 346999999999999865
No 18
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=8.9e-70 Score=614.27 Aligned_cols=502 Identities=19% Similarity=0.182 Sum_probs=411.4
Q ss_pred CCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHH
Q 005867 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (673)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~l 119 (673)
+..++.++|+++|+ ||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus 25 ~~~~l~~~~~~~a~--pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l 93 (617)
T 3rg2_A 25 QDLPLTDILTRHAA--SDSIAVIDG---E------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF 93 (617)
T ss_dssp CCCCTTHHHHTTTT--CCSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcCCHHHHHHHhhC--CCCeEEecC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence 35789999999987 999999964 3 689999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhh----hhcccccccccceEEEEeCCCcHHHHHHHhhCCC
Q 005867 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE----LLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195 (673)
Q Consensus 120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 195 (673)
||+++|++++|+++.++.+++.++++.+++++++++...... ..............+........
T Consensus 94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 162 (617)
T 3rg2_A 94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE----------- 162 (617)
T ss_dssp HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST-----------
T ss_pred HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc-----------
Confidence 999999999999999999999999999999999998765311 11111112233344444433221
Q ss_pred ceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecch
Q 005867 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275 (673)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 275 (673)
..+.+..... .......+..++++++++|||||||.||||+++|+++.+.+......+ ++..++++++++|+
T Consensus 163 --~~~~~~~~~~-~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~ 234 (617)
T 3rg2_A 163 --HNLQDAINHP-AEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIPA 234 (617)
T ss_dssp --TBHHHHHHSC-CSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCT
T ss_pred --cchhhhhccc-ccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEeccc
Confidence 1233333332 122233455789999999999999999999999999999999888777 78999999999999
Q ss_pred HhHHHHHH--hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 005867 276 AHILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK 352 (673)
Q Consensus 276 ~~~~gl~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (673)
+|.+++.. ++.++..|+++++.+. ++..++..++++++|++.++|+++..+.+.......
T Consensus 235 ~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~----------------- 297 (617)
T 3rg2_A 235 AHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGES----------------- 297 (617)
T ss_dssp TSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCC-----------------
T ss_pred hhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccc-----------------
Confidence 99999874 6778999999999876 899999999999999999999999988764321100
Q ss_pred HHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCc
Q 005867 353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM 432 (673)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~ 432 (673)
...+++||.+++||+++++++.+.|.+.+++++++.||+||++..++.......
T Consensus 298 --------------------------~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~ 351 (617)
T 3rg2_A 298 --------------------------RAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAE 351 (617)
T ss_dssp --------------------------TTTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHH
T ss_pred --------------------------cccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCccc
Confidence 001248999999999999999999999999999999999999876554433333
Q ss_pred cccCCcCCCc-cceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCccccCceEEECCCCcEE
Q 005867 433 CMVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVK 510 (673)
Q Consensus 433 ~~~~~~G~~~-~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~ 510 (673)
....++|.|+ ++++++|+| +++. +++.|+.|||+|+||+++.||+++++.|.+.| .++||+|||+|++++||.|+
T Consensus 352 ~~~~~~G~p~~~~~~~~i~d-~~~~--~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~ 428 (617)
T 3rg2_A 352 KIIHTQGYPMCPDDEVWVAD-AEGN--PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYIT 428 (617)
T ss_dssp HHHHCCCEESCTTCEEEEEC-TTSC--BCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEE
T ss_pred ccccCCCccCCCCceEEEEC-CCCC--CCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEE
Confidence 3346889987 788999999 6554 55667899999999999999999999999999 78999999999999999999
Q ss_pred EeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccH
Q 005867 511 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLV 587 (673)
Q Consensus 511 ~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (673)
++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+++..+.. +..
T Consensus 429 ~~GR~dd~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~------------------~~~ 489 (617)
T 3rg2_A 429 VQGREKDQINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPL------------------RAV 489 (617)
T ss_dssp EEEECSSEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC------------------CHH
T ss_pred EEeecCCEEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCC------------------CHH
Confidence 99999999997 7999999999999999999999999986543 4788988887632 233
Q ss_pred HHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHH
Q 005867 588 QLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQ 663 (673)
Q Consensus 588 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~~~ 663 (673)
+++++ +++.. ||.|++|..+++++ .+|+|++||++|++|++.+.+....
T Consensus 490 ~l~~~--------l~~~~-------------lp~~~vP~~~~~v~------~lP~t~~GKidR~~L~~~~~~~~~~ 538 (617)
T 3rg2_A 490 QVRRF--------LREQG-------------IAEFKLPDRVECVD------SLPLTAVGKVDKKQLRQWLASRASA 538 (617)
T ss_dssp HHHHH--------HHTTT-------------CCGGGSCSEEEECS------CCCBCTTSSBCHHHHHHHHHHHHHH
T ss_pred HHHHH--------HHhCC-------------CccccCCcEEEEec------ccCCCCCCCCcHHHHHHHHhccccc
Confidence 33333 33224 99999999999983 3469999999999999998776544
No 19
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=1e-69 Score=603.53 Aligned_cols=503 Identities=21% Similarity=0.221 Sum_probs=393.6
Q ss_pred CCCCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHH
Q 005867 37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116 (673)
Q Consensus 37 ~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~ 116 (673)
.|..++++.++|+++++ +||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++
T Consensus 19 ~p~~~~~~~~~l~~~~~-~p~~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~ 88 (529)
T 2v7b_A 19 PPALFNFAAYLFRLNET-RAGKTAYIDD----T-----GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPV 88 (529)
T ss_dssp ---CCCHHHHHHHHTGG-GTTSEEEECS----S-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHH
T ss_pred CccceeHHHHHHHhhhc-cCCceEEEeC----C-----CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHH
Confidence 34567889999999999 9999999864 2 579999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccc-eEEEEeCCCcHHHHHHHhhCCC
Q 005867 117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQTGI 195 (673)
Q Consensus 117 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~ 195 (673)
++|||+++|++++|+++.++.+++.++++.++++++|++......+..... ..... ..++..+.... ...
T Consensus 89 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~ 159 (529)
T 2v7b_A 89 AFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALE-SAEHDGCQLIVSQPRES--------EPR 159 (529)
T ss_dssp HHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHH-CC---CCEEEEECC--------------
T ss_pred HHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHh-hccccCceEEEeccccc--------ccc
Confidence 999999999999999999999999999999999999999876554432211 11112 23333332210 001
Q ss_pred ceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHH-HHHHhhhhhhhccccCCCCCCcEEEEecc
Q 005867 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI-ATFVSGVDLFLDQFEDKMTVDDVYLSFLP 274 (673)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l-~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 274 (673)
....+.++..... .........++++++++|||||||.||+|.++|+++ .+........+ ++.++|++++.+|
T Consensus 160 ~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-----~~~~~d~~~~~~p 233 (529)
T 2v7b_A 160 LAPLFEELIDAAA-PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-----GIAENDVVFSAAK 233 (529)
T ss_dssp CCCBHHHHHHTSC-CCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-----CCCTTCEEEESSC
T ss_pred cccchhhhhccCC-CcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-----CCCCCcEEEEeec
Confidence 1224666655322 122233457899999999999999999999999999 56555544434 6789999999999
Q ss_pred hHhHHHHHH-hHHHhhcCcEEEEec-C-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 005867 275 LAHILDRVI-EEYFFRRGASVGYYH-G-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY 351 (673)
Q Consensus 275 ~~~~~gl~~-~~~~l~~G~~~v~~~-~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (673)
++|.+++.. .+.++..|+++++.+ . ++..+++.++++++|+++++|+++..++.... .
T Consensus 234 ~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----~-------------- 294 (529)
T 2v7b_A 234 LFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN-----L-------------- 294 (529)
T ss_dssp TTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTT-----C--------------
T ss_pred HHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcc-----c--------------
Confidence 999999875 566899999999874 3 89999999999999999999999988754210 0
Q ss_pred HHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCC
Q 005867 352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431 (673)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~ 431 (673)
.... ..++|.+++||+++++++.+.|.+.+|+++++.||+||++.+++......
T Consensus 295 --------------~~~~------------~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~ 348 (529)
T 2v7b_A 295 --------------PARA------------DVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGA 348 (529)
T ss_dssp --------------CCGG------------GCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTC
T ss_pred --------------cccc------------CCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCC
Confidence 0000 03799999999999999999999989999999999999977665544333
Q ss_pred ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCCCcEEE
Q 005867 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKI 511 (673)
Q Consensus 432 ~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~ 511 (673)
...+++|.|+++++++|+| +++. +++.|+.|||+|+||.++.||+++++.+...|.+|||+|||+|++++||++++
T Consensus 349 -~~~~~~G~p~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~ 424 (529)
T 2v7b_A 349 -VEYGTTGRPVPGYEIELRD-EAGH--AVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVY 424 (529)
T ss_dssp -CCTTSCCEECTTCEEEEEC-TTSC--BCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEE
T ss_pred -CccCCcccCCCCCEEEEEC-CCCC--CCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECCCccEEE
Confidence 3448999999999999999 6654 45567899999999999999999999999999999999999999999999999
Q ss_pred eecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCC--CCeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHH
Q 005867 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL--KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL 589 (673)
Q Consensus 512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (673)
+||.||+||+ +|++|+|.+||++|.+||+|.+|+|++... .+.++|+|++.++.. ....+
T Consensus 425 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~~-----------------~~~~~ 486 (529)
T 2v7b_A 425 AGRSDDMLKV-SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFA-----------------PSEIL 486 (529)
T ss_dssp EEEGGGCBC-----CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTCC-----------------CCHHH
T ss_pred eCccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCCC-----------------cchhH
Confidence 9999999997 899999999999999999999999999732 247889999876420 01111
Q ss_pred HHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 005867 590 QNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI 655 (673)
Q Consensus 590 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~ 655 (673)
. ++|+++++ ++ ||.|++|+.|++++. +|+|++||++|++|++
T Consensus 487 ~----~~l~~~l~-~~-------------L~~~~~P~~i~~v~~------lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 487 A----EELKAFVK-DR-------------LAPHKYPRDIVFVDD------LPKTATGKIQRFKLRE 528 (529)
T ss_dssp H----HHHHHHHH-TT-------------SCTTTSCSEEEEESC------CCBCTTSCBCHHHHHC
T ss_pred H----HHHHHHHH-hh-------------cchhhCCeEEEEecc------CCCCCccchhHHhHhh
Confidence 1 23444443 24 999999999999843 3699999999999985
No 20
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=3e-70 Score=605.48 Aligned_cols=488 Identities=18% Similarity=0.203 Sum_probs=396.8
Q ss_pred CcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHH
Q 005867 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (673)
Q Consensus 42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~ 121 (673)
+||.++|+++|+++||++|+++. + +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~ 71 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 47899999999999999999975 3 58999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecHH
Q 005867 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD 201 (673)
Q Consensus 122 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (673)
+++|++++|+++.++.+++.++++.++++++|++....... ... .++..+ .+.
T Consensus 72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~--------~~~-~~~~~~------------------~~~ 124 (512)
T 3fce_A 72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD--------LPV-RIVSED------------------NLK 124 (512)
T ss_dssp HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC--------CSS-EEEETH------------------HHH
T ss_pred HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc--------ccc-ceechh------------------hhh
Confidence 99999999999999999999999999999999975432110 000 111100 111
Q ss_pred HHHhc-CccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHH
Q 005867 202 EFLHL-GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (673)
Q Consensus 202 ~~~~~-~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g 280 (673)
++... ......+.....++++++|+|||||||.||+|.++|+++.+.+......+ ++..+|++++.+|++|.++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 199 (512)
T 3fce_A 125 DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLS 199 (512)
T ss_dssp HHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGG
T ss_pred hhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHH
Confidence 22111 11122233455789999999999999999999999999999998887777 7899999999999999999
Q ss_pred HHHhHHHhhcCcEEEEecC----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHh
Q 005867 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (673)
Q Consensus 281 l~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (673)
+...+.+++.|+++++.+. ++..+++.++++++|+++++|+++..++....
T Consensus 200 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 254 (512)
T 3fce_A 200 VMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS------------------------- 254 (512)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT-------------------------
T ss_pred HHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc-------------------------
Confidence 8888889999999999875 88999999999999999999999987753210
Q ss_pred hhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeecCCCCCCCcccccCCCC----
Q 005867 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---- 431 (673)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~~---- 431 (673)
.. ...++++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++......
T Consensus 255 ------------~~--------~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 314 (512)
T 3fce_A 255 ------------FS--------ESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLD 314 (512)
T ss_dssp ------------CS--------TTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHH
T ss_pred ------------cc--------chhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEecccccc
Confidence 00 01125899999999999999999999988 899999999999998776544332
Q ss_pred ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhcc----CCccccCceEEECCCC
Q 005867 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII----DGWFHTGDIGQILPNG 507 (673)
Q Consensus 432 ~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~----~g~~~TGDlg~~~~~G 507 (673)
.....++|.|+++++++++| +++. +++.|+.|||+|+||.++.||+++++.+.+.|. +|||+|||+|++ +||
T Consensus 315 ~~~~~~~G~~~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG 390 (512)
T 3fce_A 315 QYKSLPVGYCKSDCRLLIMK-EDGT--IAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENG 390 (512)
T ss_dssp HCSSCCCEEECTTCEEEEEC-SSSC--BCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETT
T ss_pred ccCCCccccccCCcEEEEEC-CCCC--CCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCC
Confidence 12346899999999999999 6555 455678999999999999999999999999983 459999999999 799
Q ss_pred cEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHh
Q 005867 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC 584 (673)
Q Consensus 508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~ 584 (673)
++++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++.. .
T Consensus 391 ~l~i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~----------~------ 453 (512)
T 3fce_A 391 LLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSF----------E------ 453 (512)
T ss_dssp EEEEEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCC----------S------
T ss_pred EEEEecccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccc----------c------
Confidence 99999999999997 8999999999999999999999999986544 36889998876421 0
Q ss_pred ccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 005867 585 SLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 660 (673)
Q Consensus 585 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~ 660 (673)
...+ +.++|+++++ ++ ||.|++|+.+++++ .+|+|++||++|++|++.|.+.
T Consensus 454 ~~~~----~~~~l~~~l~-~~-------------L~~~~~P~~~~~~~------~lP~t~~GKi~R~~L~~~~~~~ 505 (512)
T 3fce_A 454 KEFK----LTSAIKKELN-ER-------------LPNYMIPRKFMYQS------SIPMTPNGKVDRKKLLSEVTAL 505 (512)
T ss_dssp SHHH----HHHHHHHHHH-TT-------------SCGGGSCSEEEECS------CCCBCTTSSBCHHHHHHHHHC-
T ss_pred chhh----hHHHHHHHHH-hh-------------CchhcCCeEEEEec------ccCCCCCcChHHHHHHhhhhhc
Confidence 1111 2233444444 23 99999999999883 3469999999999999998753
No 21
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=8.9e-70 Score=606.85 Aligned_cols=474 Identities=20% Similarity=0.223 Sum_probs=390.7
Q ss_pred CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (673)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA 120 (673)
..++.++|+++++++||++|+++. + +++||+||.+++.++|++|++.|+++||+|+++++|++++++++||
T Consensus 38 ~~~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 108 (563)
T 1amu_A 38 DKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILA 108 (563)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHCCCCeEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 478999999999999999999864 3 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecH
Q 005867 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (673)
Q Consensus 121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 200 (673)
|+++|++++|+++.++.+++.++++.++++++|++......+..... ...+..+.... +
T Consensus 109 ~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~-----~~~~~~~~~~~----------------~ 167 (563)
T 1amu_A 109 VLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF-----NGQVEIFEEDT----------------I 167 (563)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCC-----CSEEEECCCST----------------T
T ss_pred HHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccc-----cCceeeecchh----------------h
Confidence 99999999999999999999999999999999999876554422111 11222222110 0
Q ss_pred HHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHH
Q 005867 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (673)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g 280 (673)
.. . .......+..++++++|+|||||||.||||.++|+++.+.+......+ ++.++|++++++|++|..+
T Consensus 168 ---~~-~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 237 (563)
T 1amu_A 168 ---KI-R-EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDAS 237 (563)
T ss_dssp ---TT-S-CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTHH
T ss_pred ---cc-c-cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHHH
Confidence 00 0 011112345678999999999999999999999999998888776666 7889999999999999999
Q ss_pred HHHhHHHhhcCcEEEEecC----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHh
Q 005867 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (673)
Q Consensus 281 l~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (673)
+..++.+++.|+++++.+. ++..+++.++++++|++.++|+++..+...
T Consensus 238 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--------------------------- 290 (563)
T 1amu_A 238 VWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE--------------------------- 290 (563)
T ss_dssp HHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT---------------------------
T ss_pred HHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc---------------------------
Confidence 8878889999999998764 789999999999999999999998765210
Q ss_pred hhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCC--ccc
Q 005867 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--MCM 434 (673)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~--~~~ 434 (673)
..+++|.+++||+++++++.+.|.+ .+++++.||+||++..++...... ...
T Consensus 291 ------------------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~ 344 (563)
T 1amu_A 291 ------------------------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGH 344 (563)
T ss_dssp ------------------------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCS
T ss_pred ------------------------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccCCC
Confidence 0148999999999999999999876 478999999999998766543322 223
Q ss_pred cCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhcc-------CCccccCceEEECCCC
Q 005867 435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNG 507 (673)
Q Consensus 435 ~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~-------~g~~~TGDlg~~~~~G 507 (673)
..++|+|+++++++|+| +++. +++.|+.|||+|+||+++.|||++++.|.+.|. ++||+|||+|++|+||
T Consensus 345 ~~~vG~p~~~~~v~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG 421 (563)
T 1amu_A 345 SVPIGAPIQNTQIYIVD-ENLQ--LKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDG 421 (563)
T ss_dssp SCCCBEECTTEEEEEEC-TTSC--BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTS
T ss_pred CCcccceeCCCEEEEEC-CCcC--CCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCC
Confidence 46899999999999999 6654 455678999999999999999999999999984 2499999999999999
Q ss_pred cEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHh
Q 005867 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC 584 (673)
Q Consensus 508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~ 584 (673)
+|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++..+.
T Consensus 422 ~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~------------------ 482 (563)
T 1amu_A 422 NIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHI------------------ 482 (563)
T ss_dssp CEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCC------------------
T ss_pred eEEEeccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCCC------------------
Confidence 99999999999997 8999999999999999999999999987654 3788998876432
Q ss_pred ccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 005867 585 SLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY 657 (673)
Q Consensus 585 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~ 657 (673)
+.+++++++++. ||.|++|+.|++++ .+|+|++||++|++|++.+
T Consensus 483 ~~~~l~~~l~~~----------------------L~~y~~P~~i~~v~------~lP~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 483 PLEQLRQFSSEE----------------------LPTYMIPSYFIQLD------KMPLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp CHHHHHHHHHHH----------------------SCGGGSCSEEEECS------SCCBCTTSSBCGGGSCCCC
T ss_pred CHHHHHHHHHhh----------------------CchhhCCcEEEEec------ccCCCCCcChhHHhcCCcc
Confidence 334455555444 99999999999983 3469999999999998754
No 22
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1.5e-69 Score=610.19 Aligned_cols=473 Identities=18% Similarity=0.145 Sum_probs=384.6
Q ss_pred CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (673)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA 120 (673)
..|+.++|+++|+++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 26 ~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~la 96 (620)
T 4dg8_A 26 HPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLA 96 (620)
T ss_dssp SCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 579999999999999999999975 3 5899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecH
Q 005867 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (673)
Q Consensus 121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 200 (673)
|+++|++++|+++.++.+++.++++.+++++++++........ ..... . +
T Consensus 97 ilkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~--------~~~~~-~---------------------~ 146 (620)
T 4dg8_A 97 ILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN--------GLPCV-P---------------------V 146 (620)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT--------TSCEE-E---------------------G
T ss_pred HHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc--------CCcee-e---------------------e
Confidence 9999999999999999999999999999999997654322110 01100 0 0
Q ss_pred HHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHH
Q 005867 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (673)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g 280 (673)
.... ............++++++|+|||||||.||||+++|+++.+.+.. ...+ ++.+++++++.+|++|..+
T Consensus 147 ~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~~~ 218 (620)
T 4dg8_A 147 RHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-----AFAPQMRFLVNSPLSFDAA 218 (620)
T ss_dssp GGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-----TTCTTCEEEECSCTTSTHH
T ss_pred ccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-----CCCCCCEEEEECccCHHHH
Confidence 0000 001111223346899999999999999999999999999887765 3334 6889999999999999999
Q ss_pred HHHhHHHhhcCcEEEEecC---CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhh
Q 005867 281 RVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN 357 (673)
Q Consensus 281 l~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (673)
+..++.++..|+++++.+. ++..+.+.++++++|+++++|+++..+.+...
T Consensus 219 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~-------------------------- 272 (620)
T 4dg8_A 219 TLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP-------------------------- 272 (620)
T ss_dssp HHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG--------------------------
T ss_pred HHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh--------------------------
Confidence 9888899999999998753 89999999999999999999999998764210
Q ss_pred hcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeecCCCCCCCcccccCCCC---cc
Q 005867 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---MC 433 (673)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~~---~~ 433 (673)
..+++||.+++||++++++..+.+.+.+ +++++|.||+||++.+++...... ..
T Consensus 273 ----------------------~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~ 330 (620)
T 4dg8_A 273 ----------------------DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEE 330 (620)
T ss_dssp ----------------------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGS
T ss_pred ----------------------hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCC
Confidence 0114899999999999998888776665 899999999999998766543222 23
Q ss_pred ccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccC--------CccccCceEEECC
Q 005867 434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID--------GWFHTGDIGQILP 505 (673)
Q Consensus 434 ~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~--------g~~~TGDlg~~~~ 505 (673)
...++|+|+++++++|+| +++. ..++.|+.|||+|+|++++.||+++++.|.+.|.+ +||+|||+|++++
T Consensus 331 ~~~~iG~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~ 408 (620)
T 4dg8_A 331 DDIPIGKAIAGTAVLLLD-EHGQ-EIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDE 408 (620)
T ss_dssp SSCCCBEECTTEEEEEEC-TTSC-BCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECT
T ss_pred CCCCceecccCcEEEEEC-ccCC-CCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECC
Confidence 346899999999999999 5554 33556789999999999999999999999999943 7999999999999
Q ss_pred CCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCCC--eEEEEEecChhHHHHHHHHcCCCCcHHHH
Q 005867 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS--MLVAVVVPCEEDTKKWAYSNGHAGSFLEL 583 (673)
Q Consensus 506 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~--~~~a~v~~~~~~~~~~~~~~~~~~~~~~~ 583 (673)
||+|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++. .++++++...+.
T Consensus 409 dG~l~~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~~~----------------- 470 (620)
T 4dg8_A 409 QGRLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADA----------------- 470 (620)
T ss_dssp TSCEEEEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECTTC-----------------
T ss_pred CCeEEEEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecChHH-----------------
Confidence 9999999999999998 79999999999999999999999999866443 455555543321
Q ss_pred hccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 005867 584 CSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI 661 (673)
Q Consensus 584 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~ 661 (673)
+.+.+.+. ||.|++|+.+++++ .+|+|++||++|++|++.|.+..
T Consensus 471 -----~~~~l~~~----------------------Lp~y~~P~~~~~v~------~lP~t~~GKidR~~L~~~~~~~~ 515 (620)
T 4dg8_A 471 -----SPQALLRQ----------------------LPTWQRPHACVRVE------ALPLTAHGKLDRAALLRRLEEPL 515 (620)
T ss_dssp -----CCHHHHHH----------------------SCGGGSCSEEEECS------SCCCC----CCHHHHHHHTCSCC
T ss_pred -----HHHHHHHh----------------------ChhhcCCcEEEEEC------cCCCCcccCHhHHHHhhcccccc
Confidence 11223322 99999999999883 34699999999999998875433
No 23
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=5.3e-70 Score=601.98 Aligned_cols=491 Identities=22% Similarity=0.219 Sum_probs=374.1
Q ss_pred cHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHHH
Q 005867 43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN 122 (673)
Q Consensus 43 tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~~ 122 (673)
||.++|+++|+++||++|+++. + +++||+||.+++.++|++|++. +||+|+++++|++++++++|||+
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~ 69 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACW 69 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHH
Confidence 6778999999999999999864 3 5899999999999999999986 89999999999999999999999
Q ss_pred hcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCc-eecHH
Q 005867 123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK-PYSWD 201 (673)
Q Consensus 123 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~ 201 (673)
++|++++|+++.++.+++.++++.++++++|++............ ......+......... ........ .....
T Consensus 70 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 144 (501)
T 3ipl_A 70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS--LDDIEFAGRDITTNGL---LDNTMGIQYDTSNE 144 (501)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE--TTC------------------------------
T ss_pred HcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc--cccceeeeeecccccc---cccccccccccchh
Confidence 999999999999999999999999999999998865443321110 0111111000000000 00000000 00011
Q ss_pred HHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHH
Q 005867 202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281 (673)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl 281 (673)
.+...............++++++|+|||||||.||+|.++|+++.+.+......+ ++..++++++.+|++|.+|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~ 219 (501)
T 3ipl_A 145 TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISGL 219 (501)
T ss_dssp -----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHHH
T ss_pred hccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHHH
Confidence 1111111111223345789999999999999999999999999999998887777 78899999999999999999
Q ss_pred HHhHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcC
Q 005867 282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360 (673)
Q Consensus 282 ~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (673)
...+.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+....
T Consensus 220 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------------- 271 (501)
T 3ipl_A 220 SVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH---------------------------- 271 (501)
T ss_dssp HHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC----------------------------
T ss_pred HHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC----------------------------
Confidence 888889999999999887 999999999999999999999999988653110
Q ss_pred CcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCC-ccccCCcC
Q 005867 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAG 439 (673)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~-~~~~~~~G 439 (673)
...+||.+++||+++++++.+.+.+ +++++++.||+||+++.+....... .....++|
T Consensus 272 --------------------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G 330 (501)
T 3ipl_A 272 --------------------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVG 330 (501)
T ss_dssp --------------------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCB
T ss_pred --------------------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCC
Confidence 0027999999999999999999987 5999999999999987655443322 23447899
Q ss_pred CCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCCCcEEEeecCCCeE
Q 005867 440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLI 519 (673)
Q Consensus 440 ~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i 519 (673)
.|+++++++++| ++ .++.|||+|+|+.++.||+++++.+.. |.+|||+|||+|++|+||+++++||.||+|
T Consensus 331 ~p~~~~~~~i~d-~~-------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGDl~~~~~~G~l~~~GR~dd~i 401 (501)
T 3ipl_A 331 MPSANVDVKIKN-PN-------KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGDIAEIDHEGYVMIYDRRKDLI 401 (501)
T ss_dssp EECTTCEEEEES-CC-------SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEEEEEECTTSCEEEEEECCCCE
T ss_pred CCCCCcEEEEec-CC-------CCCccEEEEeccchhhhhCcChhhcch-hcCCceecCCEEEEcCCCeEEEEccccceE
Confidence 999999999999 43 235799999999999999999999887 889999999999999999999999999999
Q ss_pred EcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHH
Q 005867 520 KISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE 596 (673)
Q Consensus 520 ~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (673)
|+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++++++...+. +.+++++++++.
T Consensus 402 k~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~------------------~~~~l~~~l~~~ 462 (501)
T 3ipl_A 402 IS-GGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDI------------------SKAQLIAYLSKH 462 (501)
T ss_dssp EC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC------------------CHHHHHHHHHHH
T ss_pred EE-CCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCC------------------CHHHHHHHHHhh
Confidence 96 8999999999999999999999999987654 3678888865432 344555555544
Q ss_pred HHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 005867 597 LKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 660 (673)
Q Consensus 597 l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~ 660 (673)
||.|++|+.|++++ .+|+|++||++|++|++.+.+.
T Consensus 463 ----------------------L~~~~~P~~i~~v~------~lP~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 463 ----------------------LAKYKVPKHFEKVD------TLPYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp ----------------------SCGGGSCSEEEECS------SCC-------------------
T ss_pred ----------------------CccccCCCEEEEec------ccCCCCCCCEeHHHHhhccccc
Confidence 99999999999983 3469999999999999987653
No 24
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=1.4e-69 Score=601.56 Aligned_cols=493 Identities=16% Similarity=0.136 Sum_probs=391.1
Q ss_pred CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (673)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA 120 (673)
+.+|.++|+++|+++||++|+.+. + +++||+||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 73 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCL----G-----ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA 73 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcceecC----C-----CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 578999999999999999999874 3 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecH
Q 005867 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (673)
Q Consensus 121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 200 (673)
|+++|++++|+++.++.+++.++++.++++++|++++....+. .. . ...+
T Consensus 74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~--------~~-~---------------------~~~~ 123 (521)
T 3l8c_A 74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE--------GI-S---------------------LVSL 123 (521)
T ss_dssp HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT--------TS-E---------------------EEEH
T ss_pred HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc--------cC-c---------------------ccch
Confidence 9999999999999999999999999999999999876432211 11 1 1112
Q ss_pred HHHHhcC--ccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhH
Q 005867 201 DEFLHLG--KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (673)
Q Consensus 201 ~~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~ 278 (673)
.++.... ...........++++++|+|||||||.||+|.++|+++.+.+....... ......++++++..|++|.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~ 200 (521)
T 3l8c_A 124 SEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---AFDVPKQPQMLAQPPYSFD 200 (521)
T ss_dssp HHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---TTCCCSSCEEECCSCTTSG
T ss_pred hhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---ccCCCCCCeEEecCCccHH
Confidence 2221110 0112223355789999999999999999999999999998877655431 1267889999999999999
Q ss_pred HHHHHhHHHhhcCcEEEEecC----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 005867 279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (673)
Q Consensus 279 ~gl~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (673)
.++..++.++..|+++++.+. ++..+++.+.++++|++.++|+++..+.....
T Consensus 201 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------- 257 (521)
T 3l8c_A 201 LSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD----------------------- 257 (521)
T ss_dssp GGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT-----------------------
T ss_pred HHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc-----------------------
Confidence 888778888999999998775 88999999999999999999999987643110
Q ss_pred HhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeecCCCCCCCcccccCCCC--
Q 005867 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-- 431 (673)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~~-- 431 (673)
.. ...++++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++......
T Consensus 258 --------------~~--------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~ 315 (521)
T 3l8c_A 258 --------------FC--------QAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREM 315 (521)
T ss_dssp --------------CS--------TTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHH
T ss_pred --------------cc--------cccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeeccccc
Confidence 00 01125899999999999999999999888 899999999999998766543321
Q ss_pred --ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc----cCCccccCceEEECC
Q 005867 432 --MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI----IDGWFHTGDIGQILP 505 (673)
Q Consensus 432 --~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~----~~g~~~TGDlg~~~~ 505 (673)
.....++|+|+++++++|+| +++. +++.|+.|||+|+||.++.||+++++.+.+.| .+|||+|||+|++|+
T Consensus 316 ~~~~~~~~vG~p~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~ 392 (521)
T 3l8c_A 316 VDNYTRLPIGYPKPDSPTYIID-EDGK--ELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE 392 (521)
T ss_dssp HHHCSSCEEEEECTTSCEEEEC-TTSC--BCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECS
T ss_pred ccCCCccccccccCCCEEEEEC-CCcC--CCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeC
Confidence 12336799999999999999 6554 45567899999999999999999999999998 356999999999999
Q ss_pred CCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC----CeEEEEEecChhHHHHHHHHcCCCCcHH
Q 005867 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK----SMLVAVVVPCEEDTKKWAYSNGHAGSFL 581 (673)
Q Consensus 506 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~----~~~~a~v~~~~~~~~~~~~~~~~~~~~~ 581 (673)
||++++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++..+. +.++|+|+++++.... .
T Consensus 393 dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~-------~---- 460 (521)
T 3l8c_A 393 DNILLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKER-------F---- 460 (521)
T ss_dssp SSCEEEEEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGG-------C----
T ss_pred CCeEEEeCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccc-------c----
Confidence 9999999999999997 7999999999999999999999999986532 4689999988753100 0
Q ss_pred HHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 005867 582 ELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI 661 (673)
Q Consensus 582 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~ 661 (673)
.. ...+.++|++++++ + ||.|++|+.|++++ .+|+|++||++|++|+++++++-
T Consensus 461 ---~~---~~~~~~~l~~~l~~-~-------------l~~~~~P~~i~~v~------~lP~t~~GKidr~~L~~~~~~~~ 514 (521)
T 3l8c_A 461 ---DR---ELELTKAIKASVKD-H-------------MMSYMMPSKFLYRD------SLPLTPNGKIDIKTLINEVNNRE 514 (521)
T ss_dssp ---SS---HHHHHHHHHHHSGG-G-------------SCGGGSCSEEEECS------SCCBCTTSSBCHHHHHHHTC---
T ss_pred ---cc---chhhHHHHHHHHHh-h-------------CccccCCeEEEEec------ccCCCCCcCccHHHHhhhhhcCC
Confidence 00 01123444545442 3 99999999999883 34699999999999999987643
No 25
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=5.2e-70 Score=647.68 Aligned_cols=541 Identities=24% Similarity=0.308 Sum_probs=345.9
Q ss_pred CCCCCCCCCceeccccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHH
Q 005867 15 KDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR 94 (673)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~ 94 (673)
....+....+|++......+| ...||.++|.++++++||++|+++. +.. +++||+||.++++++|++|+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~p----~~~tl~~~l~~~a~~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~ 106 (979)
T 3tsy_A 38 QSNNNNSDVIFRSKLPDIYIP----NHLSLHDYIFQNISEFATKPCLING---PTG----HVYTYSDVHVISRQIAANFH 106 (979)
T ss_dssp -------CCCBCCSSCCCCCC----TTSCHHHHHTTTGGGTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCceeecCCCCCCCC----CCCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHH
Confidence 344455566788765554443 4579999999999999999999874 322 68999999999999999999
Q ss_pred HcCCCCCCEEEEEcCCcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccce
Q 005867 95 ASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLR 174 (673)
Q Consensus 95 ~~gv~~gd~V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ 174 (673)
+.|+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.++++.++++++|++......+....... . .
T Consensus 107 ~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~-~ 183 (979)
T 3tsy_A 107 KLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD--G-V 183 (979)
T ss_dssp HTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS--C-C
T ss_pred HcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC--C-c
Confidence 999999999999999999999999999999999999999999999999999999999999987655443221111 1 1
Q ss_pred EEEEeCCCcHHHHHHHhhCCCceecHHHHHhcCcc--CCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhh
Q 005867 175 VMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV--NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV 252 (673)
Q Consensus 175 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~ 252 (673)
.++.+++... .........+.++...... ...+.....++++++|+|||||||.||+|.++|+++++.+...
T Consensus 184 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~ 257 (979)
T 3tsy_A 184 VIVCIDDNES------VPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQ 257 (979)
T ss_dssp EEEECCCCTT------SCCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHH
T ss_pred eEEEeCCccc------ccCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHH
Confidence 2334433210 0011234455555443322 1223345678999999999999999999999999999887765
Q ss_pred hhhhccccCCCCCCcEEEEecchHhHHHHHH-hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHH
Q 005867 253 DLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGI 330 (673)
Q Consensus 253 ~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~ 330 (673)
..... ....+.+++++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|+++..|.+..
T Consensus 258 ~~~~~-~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 336 (979)
T 3tsy_A 258 VDGEN-PNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSS 336 (979)
T ss_dssp HCSSS-CSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCG
T ss_pred HHhhc-ccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCc
Confidence 43211 0125778999999999999999865 5667999999999887 9999999999999999999999998876521
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CC
Q 005867 331 KKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CA 409 (673)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~ 409 (673)
. ... ..+++||.+++||+++++++.+++.+.+ ++
T Consensus 337 ~-------------------------------------~~~--------~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~ 371 (979)
T 3tsy_A 337 E-------------------------------------TEK--------YDLSSIRVVKSGAAPLGKELEDAVNAKFPNA 371 (979)
T ss_dssp G-------------------------------------GGT--------SCCTTCCEEEESSCCCCSSHHHHHHHHCTTC
T ss_pred c-------------------------------------ccC--------CCccceEEEEEcCCCCCHHHHHHHHHHCCCC
Confidence 1 011 1125899999999999999999999988 89
Q ss_pred ceeeecCCCCCCCcccccC----CCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchh
Q 005867 410 FLVQGYGLTETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485 (673)
Q Consensus 410 ~v~~~YG~tE~~~~~~~~~----~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~ 485 (673)
++++.||+||++.+++... .......+++|.|+++++++|+| ++.+ .+++.|+.|||+|+||.++.||+++|+.
T Consensus 372 ~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~i~g~~v~~GY~~~p~~ 449 (979)
T 3tsy_A 372 KLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVD-PDTG-DSLSRNQPGEICIRGHQIMKGYLNNPAA 449 (979)
T ss_dssp EEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEEC-TTSC-CBCCTTCCEEEEEESTTSCSEETTCHHH
T ss_pred eEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEe-CCCC-CCCCCCCccEEEEECCCccccccCChhh
Confidence 9999999999998765432 11233447899999999999999 4433 4566778999999999999999999999
Q ss_pred hhhhc-cCCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEe
Q 005867 486 TRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVV 561 (673)
Q Consensus 486 ~~~~~-~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~ 561 (673)
+.+.| .+|||+|||+|++++||+|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+
T Consensus 450 t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv 528 (979)
T 3tsy_A 450 TAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVV 528 (979)
T ss_dssp HHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC-----------------------------------------------
T ss_pred hhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEE
Confidence 99999 7899999999999999999999999999998 7999999999999999999999999987654 47889988
Q ss_pred cChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCc
Q 005867 562 PCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDL 641 (673)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p 641 (673)
+.++.. .+..++++++++. ||.|++|+.+++++ .+|
T Consensus 529 ~~~~~~----------------~~~~~l~~~l~~~----------------------l~~~~~p~~i~~v~------~lP 564 (979)
T 3tsy_A 529 KSKDSE----------------LSEDDVKQFVSKQ----------------------VVFYKRINKVFFTE------SIP 564 (979)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ECCCCC----------------CCHHHHHHHHHHh----------------------cccccCCeEEEEeC------CcC
Confidence 776431 0223344443332 99999999998873 346
Q ss_pred cccccccchHHHHHHHHHHHHHHHhhh
Q 005867 642 VTATLKKKRNKLLIYYQVEIDQLYEKL 668 (673)
Q Consensus 642 ~t~~GKv~R~~l~~~~~~~~~~ly~~~ 668 (673)
+|++||++|++|+++|.+.+...|...
T Consensus 565 ~t~~GKi~r~~L~~~~~~~~~~~~~~~ 591 (979)
T 3tsy_A 565 KAPSGKILRKDLRAKLANGLGSGMASV 591 (979)
T ss_dssp ------------------------CCH
T ss_pred cCCCCCeeHHHHHHHHHhhcCCccccc
Confidence 999999999999999999988888654
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=1.8e-69 Score=596.98 Aligned_cols=477 Identities=25% Similarity=0.287 Sum_probs=372.5
Q ss_pred CCCCcHHHHHHHHHHhCCC-CCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHH
Q 005867 39 SDLNTAWDIFSMSVQKYPG-NRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA 117 (673)
Q Consensus 39 ~~~~tl~~~l~~~a~~~pd-~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~ 117 (673)
..|.++.++|.++++++|+ ++|+++. + +++||+||.++++++|.+|. .|++|+++++|+++++++
T Consensus 19 ~~~~tl~~~l~~~a~~~p~d~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~ 84 (505)
T 3nyq_A 19 SHMSSLFPALSPAPTGAPADRPALRFG----E-----RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVA 84 (505)
T ss_dssp -----CCTTTSSCCCSGGGGSEEEEET----T-----EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHH
T ss_pred cccchhHHHHHHHHHhCCCCCeEEEEC----C-----eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHH
Confidence 3578999999999999887 9999874 3 68999999999999999774 388999999999999999
Q ss_pred HHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCce
Q 005867 118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197 (673)
Q Consensus 118 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 197 (673)
+|||+++|++++|+++.++.+++.++++.++++++|++..... ......... +..+..
T Consensus 85 ~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~-~~~~~~--------------- 142 (505)
T 3nyq_A 85 VVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL------PPALGALER-VDVDVR--------------- 142 (505)
T ss_dssp HHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC------CGGGTTSEE-EECCTT---------------
T ss_pred HHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc------chhhccccc-cccccc---------------
Confidence 9999999999999999999999999999999999999865211 001111111 111100
Q ss_pred ecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHh
Q 005867 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277 (673)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~ 277 (673)
.....+.....++++++++|||||||.||+|.++|+++.+.+......+ ++..+|++++.+|++|
T Consensus 143 ----------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~ 207 (505)
T 3nyq_A 143 ----------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLPLFH 207 (505)
T ss_dssp ----------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCCTTS
T ss_pred ----------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEeccHHH
Confidence 0111223345789999999999999999999999999999999888777 7889999999999999
Q ss_pred HHHHHH-hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 005867 278 ILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355 (673)
Q Consensus 278 ~~gl~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (673)
..|+.. ++.++..|+++++.+. ++..+++.+ ++++|+++++|+++..+.+.......
T Consensus 208 ~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~-------------------- 266 (505)
T 3nyq_A 208 VHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE-------------------- 266 (505)
T ss_dssp HHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH--------------------
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch--------------------
Confidence 999875 6778999999999877 899999999 88999999999999988764321110
Q ss_pred hhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCcccc
Q 005867 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435 (673)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~ 435 (673)
....+ +++|.+++||+++++++.+++.+.+++++++.||+||+++.++...... ...
T Consensus 267 --------------~~~~l--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~ 323 (505)
T 3nyq_A 267 --------------LAKAL--------AGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGE-PRA 323 (505)
T ss_dssp --------------HHHHH--------HHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSC-CCT
T ss_pred --------------hhccc--------ccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCC-CCC
Confidence 00011 3899999999999999999999989999999999999997766554433 344
Q ss_pred CCcCCCccceeEEEeecCCCCCCCC-CCCCCceEEEecCCccccccCCchhhhhhc-cCCccccCceEEECCCCcEEEee
Q 005867 436 GTAGPVSVYSELRLEEVPEMGYSPL-DDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIID 513 (673)
Q Consensus 436 ~~~G~~~~~~~v~i~~~~~~~~~~~-~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~~G 513 (673)
+++|+|+++++++|+| +++...+. +.|+.|||+|+|+.++.||+++++.+...| .+|||+|||+|++++||.++++|
T Consensus 324 ~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~G 402 (505)
T 3nyq_A 324 GTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVG 402 (505)
T ss_dssp TCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEE
T ss_pred CCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeC
Confidence 8999999999999999 66665553 447899999999999999999999999999 69999999999999999999999
Q ss_pred cC-CCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHH
Q 005867 514 RK-KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL 589 (673)
Q Consensus 514 R~-~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (673)
|. ||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.+... . ...+++
T Consensus 403 R~~d~~ik~-~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~-------~--------~~~~~l 466 (505)
T 3nyq_A 403 RKATDLIKS-GGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAA-------P--------PALGTL 466 (505)
T ss_dssp ESSCCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTS-------C--------CCHHHH
T ss_pred CccCceEEe-CCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCC-------C--------CCHHHH
Confidence 98 599997 8999999999999999999999999987654 47999999875320 0 023445
Q ss_pred HHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 005867 590 QNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI 655 (673)
Q Consensus 590 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~ 655 (673)
++++++. ||.|++|+.|++++ .+|+|++||++|++|++
T Consensus 467 ~~~l~~~----------------------L~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 467 ADHVAAR----------------------LAPHKRPRVVRYLD------AVPRNDMGKIMKRALNR 504 (505)
T ss_dssp HHHHHHH----------------------TCGGGSCSEEEECS------CCCC-------------
T ss_pred HHHHHhh----------------------CCCCcCccEEEEEC------CCCCCCCcCeeHHhhcc
Confidence 5555544 99999999999983 34699999999999986
No 27
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=5e-67 Score=588.98 Aligned_cols=515 Identities=19% Similarity=0.223 Sum_probs=401.3
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC
Q 005867 31 SNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGAN 110 (673)
Q Consensus 31 ~~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~ 110 (673)
...+|...+++.||.++|+++|+++|+.+++... .+..+++||+||.++++++|++|++.|+++||+|+++++|
T Consensus 10 ~~~~~~~~~~~~tl~~~l~~~a~~~p~~~~~~~~------~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~ 83 (576)
T 3gqw_A 10 THSLPMRYADFPTLVDALDYAALSSAGMNFYDRR------CQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAET 83 (576)
T ss_dssp ----CCCCSCCSSHHHHHHHHTTSSCEEEEECTT------SCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCS
T ss_pred cCCCCcccCCCCcHHHHHHHHhhCCCCeEEeCCC------CCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC
Confidence 3456677778899999999999999998877432 2223789999999999999999999999999999999999
Q ss_pred cHhHHHHHHHHHhcCCeEeeCCCCCC-------hhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCc
Q 005867 111 CPQWVEAMEACNALSLICVPLYDTLG-------PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLT 183 (673)
Q Consensus 111 ~~e~~~~~lA~~~~G~~~vpl~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 183 (673)
++++++++|||+++|++++|+++.++ .+++.++++.++++++|+++.....+..... ...... +
T Consensus 84 ~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-~~~~~~-~------- 154 (576)
T 3gqw_A 84 SSEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATH-DNPELH-V------- 154 (576)
T ss_dssp SHHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGG-GCTTCE-E-------
T ss_pred cHHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhc-cCCcce-e-------
Confidence 99999999999999999999999998 7899999999999999999876655432221 111111 1
Q ss_pred HHHHHHHhhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhh-hccccCC
Q 005867 184 AEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF-LDQFEDK 262 (673)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~-~~~~~~~ 262 (673)
...... ..............++++++|+|||||||.||+|.++|+++++.+...... + +
T Consensus 155 --------------~~~~~~-~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~ 214 (576)
T 3gqw_A 155 --------------LSHAWF-KALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGI-----K 214 (576)
T ss_dssp --------------EEHHHH-HTSCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTS-----C
T ss_pred --------------cchhhh-hcccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhccc-----C
Confidence 111111 111122223334568999999999999999999999999999888776443 4 7
Q ss_pred CCCCcEEEEecchHhHHHHHH-hHHHhhcCcEEEEecC-----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHh
Q 005867 263 MTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336 (673)
Q Consensus 263 ~~~~d~~l~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~ 336 (673)
+.++|++++++|++|.+|+.. .+.++..|+++++... ++..+++.++++++|+++++|+++..+.+.....
T Consensus 215 ~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~--- 291 (576)
T 3gqw_A 215 LRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEK--- 291 (576)
T ss_dssp CCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHH---
T ss_pred CCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhccc---
Confidence 889999999999999999875 5567888999888763 7889999999999999999999998765422111
Q ss_pred hchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc------CCc
Q 005867 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC------CAF 410 (673)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~------g~~ 410 (673)
......++++|.+++||+++++++.+.|.+.+ +.+
T Consensus 292 ---------------------------------------~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~ 332 (576)
T 3gqw_A 292 ---------------------------------------DLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKT 332 (576)
T ss_dssp ---------------------------------------HHTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGG
T ss_pred ---------------------------------------ccccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCccc
Confidence 01111235899999999999999999999887 678
Q ss_pred eeeecCCCCCCCcccccCCCCc---------------------------cccCCcCCCccceeEEEeecCCCCCCCCCCC
Q 005867 411 LVQGYGLTETCGPTTVCFPDEM---------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDP 463 (673)
Q Consensus 411 v~~~YG~tE~~~~~~~~~~~~~---------------------------~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g 463 (673)
+++.||+||+++.++....... ....++|+|+++++++|+| +++. +++.|
T Consensus 333 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~--~~~~g 409 (576)
T 3gqw_A 333 FMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGM--PVAER 409 (576)
T ss_dssp EEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTSC--BCCTT
T ss_pred ccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCCC--CCCCC
Confidence 9999999999987765432210 1113789999999999999 6555 45667
Q ss_pred CCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcc
Q 005867 464 PCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE 543 (673)
Q Consensus 464 ~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~ 543 (673)
+.|||+|+||.++.||+++++.+...+.+|||+|||+|++ +||.++++||.||+||+ +|++|+|.+||++|.+||+|.
T Consensus 410 ~~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~ 487 (576)
T 3gqw_A 410 VVGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYL-LDGYLYVTGRIKDLIII-RGRNIWPQDIEYIAEQEPEIH 487 (576)
T ss_dssp BCEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEE-ETTEEEEEEETTTCEEE-TTEEECHHHHHHHHTTSSSCC
T ss_pred CeEEEEEeCccccccccCCccccccccCCCeeeccceEEE-ECCEEEEEecCcceEEE-CCEEECHHHHHHHHHhCcccc
Confidence 8999999999999999999999888889999999999999 79999999999999998 899999999999999999999
Q ss_pred eEEEEecCCC-CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccC-cc
Q 005867 544 DIWVYGDSLK-SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLL-RG 621 (673)
Q Consensus 544 ~~~v~~~~~~-~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L-p~ 621 (673)
+|+|++..+. +.++++++....... ...++.+.+.+. | +.
T Consensus 488 ~~~vv~~~~~~~~~~~~~~~~~~~~~----------------~~~~l~~~l~~~----------------------l~~~ 529 (576)
T 3gqw_A 488 SGDAIAFVTAQEKIILQIQCRISDEE----------------RRGQLIHALAAR----------------------IQSE 529 (576)
T ss_dssp TTSEEEEECTTSCEEEEEECCCCCHH----------------HHHHHHHHHHHH----------------------HHHH
T ss_pred cccEEEEEcCCccEEEEEEEecCchh----------------HHHHHHHHHHHH----------------------HHHH
Confidence 8777764333 344455444332100 122333333333 4 57
Q ss_pred ceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhhhc
Q 005867 622 FEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLA 669 (673)
Q Consensus 622 ~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~~~ly~~~~ 669 (673)
|++|..+.+++ .+.+|+|++||++|++|+++|++.+++.|...+
T Consensus 530 ~~~p~~i~~v~----~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~ 573 (576)
T 3gqw_A 530 FGVTAAIDLLP----PHSIPRTSSGKPARAEAKKRYQKAYAASLNVQE 573 (576)
T ss_dssp HSCCEEEEEEC----SSCSCBCTTSSBCHHHHHHHHHHHHTCC-----
T ss_pred hCCceeEEEEC----CCCcCcCCCccchHHHHHHHHHHHhhhccchhh
Confidence 88898888874 245679999999999999999999988877554
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=2.8e-67 Score=592.52 Aligned_cols=502 Identities=17% Similarity=0.187 Sum_probs=394.9
Q ss_pred CCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHH
Q 005867 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (673)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~l 119 (673)
+..||.++|+++|+++||++|+++. ++ +..+++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus 9 ~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~l 83 (590)
T 3kxw_A 9 QCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFL 83 (590)
T ss_dssp TCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHH
Confidence 4689999999999999999999986 42 223789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEeeCCCCC---ChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCc
Q 005867 120 ACNALSLICVPLYDTL---GPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (673)
Q Consensus 120 A~~~~G~~~vpl~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 196 (673)
||+++|++++|+++.. +.+++.++++.+++++++++.+....+........+....+...
T Consensus 84 A~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 146 (590)
T 3kxw_A 84 GCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAI----------------- 146 (590)
T ss_dssp HHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEE-----------------
T ss_pred HHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccccccee-----------------
Confidence 9999999999999987 45789999999999999999887766543221111111111111
Q ss_pred eecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchH
Q 005867 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (673)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 276 (673)
..+.+.... ..........++++++|+|||||||.||||.++|+++++.+......+ ++.++|++++++|++
T Consensus 147 --~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 218 (590)
T 3kxw_A 147 --ALESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLPPH 218 (590)
T ss_dssp --EGGGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred --echhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecCCC
Confidence 111111000 112223456789999999999999999999999999999999887777 789999999999999
Q ss_pred hHHHHHH-hHHHhhcCcEEEEecC-----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 005867 277 HILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 350 (673)
Q Consensus 277 ~~~gl~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (673)
|.+|+.. ++.+++.|+++++.+. ++..+++.++++++|++.++|.++..+.+.+...
T Consensus 219 h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~----------------- 281 (590)
T 3kxw_A 219 HDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREE----------------- 281 (590)
T ss_dssp SHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGG-----------------
T ss_pred cchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhh-----------------
Confidence 9999886 6778999999998874 7899999999999999999999998876532111
Q ss_pred HHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcC------CceeeecCCCCCCCcc
Q 005867 351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLTETCGPT 424 (673)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g------~~v~~~YG~tE~~~~~ 424 (673)
.... ..+++||.+++||+++++++.+.|.+.++ .++++.||+||+++.+
T Consensus 282 -----------------~~~~--------~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~ 336 (590)
T 3kxw_A 282 -----------------KKEG--------LDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLV 336 (590)
T ss_dssp -----------------GGTT--------CCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEE
T ss_pred -----------------hccC--------CCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccccccccccccccee
Confidence 0011 12259999999999999999999998873 4799999999999877
Q ss_pred cccCCC--------------------------CccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCcccc
Q 005867 425 TVCFPD--------------------------EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478 (673)
Q Consensus 425 ~~~~~~--------------------------~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~g 478 (673)
+..... ......++|.|+++ ++|+| +++ ..+++.|+.|||+|+||.++.|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d-~~~-~~~~~~g~~GEl~v~g~~v~~G 412 (590)
T 3kxw_A 337 TGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID-PDT-LIPCDFDQVGEIWVQSNSVAKG 412 (590)
T ss_dssp EECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC-TTT-CCBCCTTBCEEEEEESTTSCCC
T ss_pred ecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc-CCC-CcCCCCCCEEEEEEeCCccccc
Confidence 654321 11233688999998 77888 442 3566777899999999999999
Q ss_pred ccCCchhhhhhccC-------C--ccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHH-hcCcCcc--eEE
Q 005867 479 YYKNPDLTRESIID-------G--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY-CVAPIIE--DIW 546 (673)
Q Consensus 479 y~~~~~~~~~~~~~-------g--~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l-~~~p~V~--~~~ 546 (673)
|+++++.|.+.|.+ | ||+|||+|++| +|.|+++||.||+||+ +|++|+|.+||++| ..+|.|. +|+
T Consensus 413 Y~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~v~~~~~~ 490 (590)
T 3kxw_A 413 YWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHSPLHHVLGKCA 490 (590)
T ss_dssp BTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHSGGGGGEEEEE
T ss_pred ccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhcCccccCccEE
Confidence 99999999999943 5 99999999999 9999999999999998 89999999999999 8899998 788
Q ss_pred EEecCCC--CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCcc-ce
Q 005867 547 VYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRG-FE 623 (673)
Q Consensus 547 v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~-~~ 623 (673)
|++.+++ +.+++++++.++.... .+.+++.+++++. |+. |.
T Consensus 491 v~~~~~~~~~~~~~~v~~~~~~~~~--------------~~~~~l~~~l~~~----------------------l~~~~~ 534 (590)
T 3kxw_A 491 AFVIQEEHEYKLTVMCEVKNRFMDD--------------VAQDNLFNEIFEL----------------------VYENHQ 534 (590)
T ss_dssp EEEEEETTEEEEEEEEEESCTTCCH--------------HHHHHHHHHHHHH----------------------HHHHHS
T ss_pred EEEecCCCCceEEEEEEeccccccc--------------hhHHHHHHHHHHH----------------------HHHHcC
Confidence 8885543 4788888877542000 0233444444444 332 45
Q ss_pred eee-EEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 005867 624 HIK-GVILDPRPFDMERDLVTATLKKKRNKLLIYYQV 659 (673)
Q Consensus 624 ~p~-~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~ 659 (673)
+|. .+.+++ ++.+|+|++||++|++|+++|.+
T Consensus 535 ~p~~~i~~v~----~~~lP~t~sGKi~R~~L~~~~~~ 567 (590)
T 3kxw_A 535 LEVHTIVLIP----LKAMPHTTSGKIRRNFCRKHLLD 567 (590)
T ss_dssp CCCCEEEEEE----TTCSCCCSCHHHHHHHHHHHHHH
T ss_pred CceeEEEEEC----CCccCcCCCcHHHHHHHHHHHHc
Confidence 553 555553 24567999999999999999976
No 29
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.2e-67 Score=591.34 Aligned_cols=523 Identities=16% Similarity=0.135 Sum_probs=318.7
Q ss_pred CCCCCCCcHHHHHHHHHHhCCCCCceeeeecccCC----CCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc
Q 005867 36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGK----FGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC 111 (673)
Q Consensus 36 ~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~----~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~ 111 (673)
+...+..|+.++|+++|+++||++|+++. ++. ....+++||+||.++++++|++|.+.|+ +||+|+++++|+
T Consensus 14 ~~~~~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~ 89 (562)
T 3ite_A 14 AQYTSTVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRS 89 (562)
T ss_dssp ----CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSC
T ss_pred eeecccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCC
Confidence 33455688999999999999999999976 321 2233789999999999999999999999 799999999999
Q ss_pred HhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHh
Q 005867 112 PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191 (673)
Q Consensus 112 ~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 191 (673)
+++++++|||+++|++++|+++.++.+++.++++.++++++|+++....... ......++....
T Consensus 90 ~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~---------- 153 (562)
T 3ite_A 90 LIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------LPPETKVLDTKN---------- 153 (562)
T ss_dssp HHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------CCTTCEEEETTC----------
T ss_pred HHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------cCccceeecccc----------
Confidence 9999999999999999999999999999999999999999999876543321 111112222111
Q ss_pred hCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhcc---ccCCCCCCcE
Q 005867 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ---FEDKMTVDDV 268 (673)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~---~~~~~~~~d~ 268 (673)
..+.+...... .........++++++|+|||||||.||+|+++|+++.+.+......+.. ....+...++
T Consensus 154 ------~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (562)
T 3ite_A 154 ------QSFIENLSTQD-TSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGK 226 (562)
T ss_dssp ------HHHHHHHHHSC-CSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCE
T ss_pred ------hhhhhhccccc-ccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCce
Confidence 11222222221 1112234467889999999999999999999999999887765543311 1124678899
Q ss_pred EEEecchHhHHHHHHhHHHhhcCcEEEEecC--CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHH
Q 005867 269 YLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD 346 (673)
Q Consensus 269 ~l~~~p~~~~~gl~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~ 346 (673)
+++..|+.|..++...+.++..|+++++.+. .+..+.+.++++++|+++++|+++..+...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----------------- 289 (562)
T 3ite_A 227 FLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----------------- 289 (562)
T ss_dssp EECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC-----------------
T ss_pred EEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC-----------------
Confidence 9999999998888878889999999988765 467888999999999999999987654210
Q ss_pred HHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccc
Q 005867 347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTV 426 (673)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~ 426 (673)
+ ..+++||.+++||+++++++.+.|.+.+++++++.||+||+++.++.
T Consensus 290 --------------------~------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~ 337 (562)
T 3ite_A 290 --------------------P------------EDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSA 337 (562)
T ss_dssp --------------------G------------GGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEE
T ss_pred --------------------c------------cccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeee
Confidence 0 01258999999999999999999998889999999999999987766
Q ss_pred cCCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCC--ccccCceEEEC
Q 005867 427 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG--WFHTGDIGQIL 504 (673)
Q Consensus 427 ~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g--~~~TGDlg~~~ 504 (673)
..........++|.|++++++++++ ++++ .+++.|+.|||+|+||.++.|||++++.+...+.+| ||+|||+|++|
T Consensus 338 ~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d 415 (562)
T 3ite_A 338 GRILPDSDTRCIGHPLGDSVAHVLA-PGSN-EHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMD 415 (562)
T ss_dssp EECCTTSCTTEEEEECTTCEEEEEC-TTSS-CBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEEC
T ss_pred eeecCCCCCccccccCCCCeEEEEe-CCCC-CCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEc
Confidence 5544444457899999999999999 4433 456677899999999999999999999988777777 99999999999
Q ss_pred CCCcEEEeecCCCeEEcCCceeechHHHHHHHhcC-cCcceEEEEecCCCC---eEEEEEecChhHHHHHHHHcCCCCcH
Q 005867 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVA-PIIEDIWVYGDSLKS---MLVAVVVPCEEDTKKWAYSNGHAGSF 580 (673)
Q Consensus 505 ~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~-p~V~~~~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~ 580 (673)
+||+|+++||.||+||+ +|++|+|.+||++|.+| |.+.+++|++.+++. ..+++++...+.... ...
T Consensus 416 ~dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~ 486 (562)
T 3ite_A 416 ADSSILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVR--------GEL 486 (562)
T ss_dssp TTSCEEEEEEC---------------------------------------------------------------------
T ss_pred CCCeEEEEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEeccccccc--------ccc
Confidence 99999999999999997 89999999999999998 788888888766542 333333333221100 000
Q ss_pred HHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccc-cccccchHHHHHHHHH
Q 005867 581 LELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVT-ATLKKKRNKLLIYYQV 659 (673)
Q Consensus 581 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t-~~GKv~R~~l~~~~~~ 659 (673)
.. .. +-.+.+.++|+++++ .+||.|++|+.|++++ .+|+| ++||++|++|+++|++
T Consensus 487 ~~-~~--~~~~~~~~~l~~~~~--------------~~L~~y~~P~~i~~v~------~lP~t~~~GKi~r~~L~~~~~~ 543 (562)
T 3ite_A 487 RW-IN--ENYKEINNSLRQACE--------------QTLPAYMVPDFIIPIS------FIPLRDTSAKTDAKALEHMFHT 543 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cc-cc--cchhhHHHHHHHHHH--------------hhCCcccCCcEEEEec------cCCCCCCCCcchHHHHHHHHhc
Confidence 00 00 001112233333333 3399999999999883 33688 8999999999999976
Q ss_pred -HHHHHHhhh
Q 005867 660 -EIDQLYEKL 668 (673)
Q Consensus 660 -~~~~ly~~~ 668 (673)
..++++..+
T Consensus 544 ~~~~~~~~~~ 553 (562)
T 3ite_A 544 LSLGELFGES 553 (562)
T ss_dssp ----------
T ss_pred cCHHHHhccC
Confidence 345565543
No 30
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=1.7e-65 Score=623.90 Aligned_cols=477 Identities=19% Similarity=0.216 Sum_probs=395.1
Q ss_pred CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (673)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA 120 (673)
..++.++|+.+++++||++|+++. + +++||+||.++++++|++|++.|+++|++|+|++++++++++++||
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la 533 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG 533 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 378999999999999999999875 3 5899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecH
Q 005867 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (673)
Q Consensus 121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 200 (673)
|+++|++++|++|.++.+++.+++++++++++|++......+.. .+.....+.+++... +
T Consensus 534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----~~~~~~~~~~~~~~~---------------~ 593 (1304)
T 2vsq_A 534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE-----LPYTGTTLFIDDQTR---------------F 593 (1304)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT-----CCCCSEEEESSCGGG---------------G
T ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc-----cCCCCcEEEeccccc---------------c
Confidence 99999999999999999999999999999999998865443211 111122333322110 0
Q ss_pred HHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHH
Q 005867 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (673)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g 280 (673)
.. ....+.....+++++||+|||||||.||||+++|+++.+. ......+ ++..+++++++.|++|..+
T Consensus 594 ----~~--~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-----~~~~~d~~l~~~~~~fd~~ 661 (1304)
T 2vsq_A 594 ----EE--QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-----AFSDQDTFLSVSNYAFDAF 661 (1304)
T ss_dssp ----GS--CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS-----CCCTTCEEEECSCTTSTHH
T ss_pred ----cc--ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc-----CCCCCCEEEEECCccHHHH
Confidence 00 1111223457899999999999999999999999999876 3333333 6789999999999999888
Q ss_pred HHHhHHHhhcCcEEEEecC----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHh
Q 005867 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (673)
Q Consensus 281 l~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (673)
...++.++..|+++++.+. ++..+.+.+.++++|+++++|+++..+.+.....
T Consensus 662 ~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~----------------------- 718 (1304)
T 2vsq_A 662 TFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDW----------------------- 718 (1304)
T ss_dssp HHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHH-----------------------
T ss_pred HHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhc-----------------------
Confidence 8888899999999999874 8899999999999999999999999875421000
Q ss_pred hhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcC-CceeeecCCCCCCCcccccCCCC---c
Q 005867 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDE---M 432 (673)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g-~~v~~~YG~tE~~~~~~~~~~~~---~ 432 (673)
+ ++||.+++|||++++++.+.|.+.++ .+++|.||+||+++.++...... .
T Consensus 719 -----------------~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 773 (1304)
T 2vsq_A 719 -----------------M--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDS 773 (1304)
T ss_dssp -----------------H--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSS
T ss_pred -----------------C--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCcccc
Confidence 0 28999999999999999999888774 78999999999998776544322 2
Q ss_pred cccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhcc-------CCccccCceEEECC
Q 005867 433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILP 505 (673)
Q Consensus 433 ~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~-------~g~~~TGDlg~~~~ 505 (673)
....++|+|++|++++|+| +++. +++.|+.|||+|+|++++.||+++|+.|.+.|. ++||+|||+|++++
T Consensus 774 ~~~~~iG~p~~~~~~~i~d-~~~~--~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~ 850 (1304)
T 2vsq_A 774 ISSLPIGKPISNASVYILN-EQSQ--LQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLP 850 (1304)
T ss_dssp CSSCCCBEECTTEEEEEEC-TTSC--BCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECT
T ss_pred CCCCCCceeeCCCEEEEEC-CCcC--CCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcC
Confidence 2336899999999999999 6554 555678999999999999999999999999993 34999999999999
Q ss_pred CCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHH
Q 005867 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLE 582 (673)
Q Consensus 506 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 582 (673)
||.|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.++. ..++|+|+.....
T Consensus 851 dG~l~~~GR~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~---------------- 913 (1304)
T 2vsq_A 851 DGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQL---------------- 913 (1304)
T ss_dssp TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSS----------------
T ss_pred CCeEEEEcCCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCC----------------
Confidence 9999999999999998 7999999999999999999999999986543 4899999986532
Q ss_pred HhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 005867 583 LCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY 656 (673)
Q Consensus 583 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~ 656 (673)
+..++++++.+. ||.|++|..+++++ .+|+|++||++|++|.+.
T Consensus 914 --~~~~l~~~l~~~----------------------Lp~ymvP~~~~~l~------~lP~t~~GKidR~~L~~~ 957 (1304)
T 2vsq_A 914 --SAEDVKAHLKKQ----------------------LPAYMVPQTFTFLD------ELPLTTNGKVNKRLLPKP 957 (1304)
T ss_dssp --CHHHHHHHHHHH----------------------SCGGGSCSEEEEES------CCCCCSSCSSCCSCCCCC
T ss_pred --CHHHHHHHHHHh----------------------ChHhhhccEEEEec------ccCCCCCcccCHhhcCCc
Confidence 334555555544 99999999999983 346999999999988543
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=2.5e-55 Score=482.42 Aligned_cols=401 Identities=16% Similarity=0.200 Sum_probs=311.7
Q ss_pred CCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHH
Q 005867 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (673)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~l 119 (673)
...||.++|+++|+++||++|+++....++..+..+++||+||.++++++|++|++.|+ +||+|+|+++|++++++++|
T Consensus 22 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~l 100 (480)
T 3t5a_A 22 SVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFL 100 (480)
T ss_dssp --CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHH
Confidence 35799999999999999999999871111233445799999999999999999999996 99999999999999999999
Q ss_pred HHHhcCCeEeeCCC---CCChhhHHHHHhccCceEEEEcchhhhhhhcccccccc-cceEEEEeCCCcHHHHHHHhhCCC
Q 005867 120 ACNALSLICVPLYD---TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMAVQTGI 195 (673)
Q Consensus 120 A~~~~G~~~vpl~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~ 195 (673)
||+++|++++|+++ .++.+++.++++.++++++|++......+......... ....++..+...
T Consensus 101 A~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 168 (480)
T 3t5a_A 101 GALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD------------ 168 (480)
T ss_dssp HHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC------------
T ss_pred HHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc------------
Confidence 99999999999999 77899999999999999999999876655433221110 011222221110
Q ss_pred ceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCC------CcEE
Q 005867 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV------DDVY 269 (673)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~------~d~~ 269 (673)
. ............++++++|+|||||||.||||+++|+++.+.+......+ .+.. ++++
T Consensus 169 ---------~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~d~~ 233 (480)
T 3t5a_A 169 ---------L-DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPPNSAL 233 (480)
T ss_dssp ---------T-TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCTTEEE
T ss_pred ---------c-ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCCCCeE
Confidence 0 00112223455788999999999999999999999999999988877766 4555 8999
Q ss_pred EEecchHhHHHHHH-hHHHhhcCcEEEEecC-----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHH
Q 005867 270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR 343 (673)
Q Consensus 270 l~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~ 343 (673)
++.+|++|.+|+.. ++.+++.|+++++.+. ++..+++.++++++| +.++|+++..++.....
T Consensus 234 l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~----------- 301 (480)
T 3t5a_A 234 VSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTT----------- 301 (480)
T ss_dssp EECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCC-----------
T ss_pred EEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcC-----------
Confidence 99999999999764 6778999999999863 889999999999999 88899988777542110
Q ss_pred HHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcC------CceeeecCC
Q 005867 344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGL 417 (673)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g------~~v~~~YG~ 417 (673)
.+... ...+++||.+++||+++++++.+.|.+.++ +.+++.||+
T Consensus 302 ----------------------~~~~~--------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~ 351 (480)
T 3t5a_A 302 ----------------------DDDMA--------GRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWL 351 (480)
T ss_dssp ----------------------TGGGT--------TCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEE
T ss_pred ----------------------ccccc--------ccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccc
Confidence 00011 112359999999999999999999999874 479999999
Q ss_pred CCCCCcccccCCCC------------------------ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecC
Q 005867 418 TETCGPTTVCFPDE------------------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK 473 (673)
Q Consensus 418 tE~~~~~~~~~~~~------------------------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp 473 (673)
||+++.++...... .....++|+|++ ++++|+| ++++ .+++.|+.|||+|+||
T Consensus 352 TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd-~~~g-~~~~~g~~GEl~v~g~ 428 (480)
T 3t5a_A 352 AEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVD-SDTC-IECPDGTVGEIWVHGD 428 (480)
T ss_dssp TTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEE-TTTT-EECCTTBCEEEEEEST
T ss_pred cccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEc-CCCC-cCCCCCCEEEEEEeCC
Confidence 99998776654322 123368999999 9999999 5432 4556678999999999
Q ss_pred CccccccCCchhhhhhc------------cCCccccCceEEECCCCcEEEeec
Q 005867 474 TLFSGYYKNPDLTRESI------------IDGWFHTGDIGQILPNGVVKIIDR 514 (673)
Q Consensus 474 ~~~~gy~~~~~~~~~~~------------~~g~~~TGDlg~~~~~G~l~~~GR 514 (673)
+++.|||++|+.|.+.| .+|||+|||+|+++ ||+|+|+||
T Consensus 429 ~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 429 NVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp TSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred ccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 99999999999999998 35699999999997 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=8.3e-49 Score=411.81 Aligned_cols=314 Identities=18% Similarity=0.113 Sum_probs=255.6
Q ss_pred CCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHHHhHHHhhcCcEEEEec
Q 005867 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298 (673)
Q Consensus 219 ~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v~~~ 298 (673)
.+++++|+|||||||.||+|+++|+++.+.+......+ +++++|++++++|++|.+|+..++.++..|+++++..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~ 110 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE 110 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence 46789999999999999999999999999999888877 8899999999999999999988888999999998887
Q ss_pred CCHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHH
Q 005867 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVK 378 (673)
Q Consensus 299 ~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (673)
. ....+..++++++|+++++|+++..|++.... ..+
T Consensus 111 ~-~~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~--------------------------------------~~~----- 146 (358)
T 4gs5_A 111 P-TANPLAGLDHADFDFVAMVPMQLQSILENSAT--------------------------------------SGQ----- 146 (358)
T ss_dssp C-CSCTTTTCSSCCCSEEEECHHHHHHHHHCTTT--------------------------------------GGG-----
T ss_pred c-cccHHHHHHHhCCeEEEcChHHHHHhhccccc--------------------------------------ccc-----
Confidence 5 22346788999999999999999988652110 001
Q ss_pred HHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCccccCCcCCCccceeEEEeecCCCCCC
Q 005867 379 ARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 458 (673)
Q Consensus 379 ~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~ 458 (673)
+++||.+++||+++++++.+++++ +++++++.||+||+++.++....+.... +++|.+.||+++.+.+
T Consensus 147 ---l~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~-g~~~~~~pgv~~~~~~------- 214 (358)
T 4gs5_A 147 ---VDRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEA-SELYVFLPGIQYGVDE------- 214 (358)
T ss_dssp ---GGGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTC-CSCEEECTTCEEEECT-------
T ss_pred ---CCcceEEEEcccCCCchheecccc-cCceEEeccccccccceeeccccccccc-ceeeccCCCeEEEecC-------
Confidence 148999999999999999999987 5999999999999998877666554433 7889999999888755
Q ss_pred CCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHH--
Q 005867 459 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY-- 536 (673)
Q Consensus 459 ~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l-- 536 (673)
.|||+++|+.. .+|||+|||+|++|++| ++++||.||+||+ +|++|+|.+||++|
T Consensus 215 ------~Gel~~~g~~~---------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~ 271 (358)
T 4gs5_A 215 ------RGCLHISGAVT---------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINS-GGVKIVLDQIDQRIAA 271 (358)
T ss_dssp ------TSEEEEESGGG---------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTEEEEHHHHHHHHHH
T ss_pred ------cCceEEecccc---------------cCcceecCCccccccCc-eEEcccccCeEEE-CCEEECHHHHHHHHHH
Confidence 59999998643 37899999999999888 6778999999997 89999999999887
Q ss_pred -hcCcCcceEEEE-ecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccc
Q 005867 537 -CVAPIIEDIWVY-GDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANW 611 (673)
Q Consensus 537 -~~~p~V~~~~v~-~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 611 (673)
..||+|.+|+|+ +.+++ +.++|+|+...... ..+++++++++.
T Consensus 272 ~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~~-----------------~~~~l~~~l~~~--------------- 319 (358)
T 4gs5_A 272 VFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPEA-----------------LTERLTAEIRSR--------------- 319 (358)
T ss_dssp HHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCHH-----------------HHHHHHHHHHHH---------------
T ss_pred hccCCCccEEEEEEecCCccCCEEEEEEEECCCCCc-----------------CHHHHHHHHHhh---------------
Confidence 468999999886 44433 36888888765431 223344444333
Q ss_pred cccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 005867 612 DTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI 661 (673)
Q Consensus 612 ~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~ 661 (673)
||.|++|+.|++++ .+|+|++||++|++|++++++..
T Consensus 320 -------L~~~~~P~~i~~v~------~lP~t~~GKi~R~~L~~~l~e~~ 356 (358)
T 4gs5_A 320 -------VSTYENPKHIYFAK------AFAKTQTDKIDKRATFQKLSDSS 356 (358)
T ss_dssp -------SCGGGSCSCEEEES------SCCBCTTSCBCHHHHHHHTC---
T ss_pred -------CCCCCCceEEEEEC------CcCCCCCCChhHHHHHHHhhhhc
Confidence 99999999999984 34699999999999999886643
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=1.3e-43 Score=384.65 Aligned_cols=338 Identities=17% Similarity=0.126 Sum_probs=257.8
Q ss_pred CCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecch-HhHHHHHHhHHHhhcCcEE
Q 005867 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASV 294 (673)
Q Consensus 216 ~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~-~~~~gl~~~~~~l~~G~~~ 294 (673)
...++++++++|||||||.||+|.++|+++..........+.. .++.++|++++.+|+ .|..++...+.++..|+++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~ 165 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRA--AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMV 165 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEE
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEE
Confidence 3467899999999999999999999999998776554432211 167899999999998 5777777777889999999
Q ss_pred EEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHh
Q 005867 295 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA 373 (673)
Q Consensus 295 v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (673)
++.+. ++..+++.++++++|+++++|+++..|.+.........
T Consensus 166 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~------------------------------------ 209 (443)
T 2y4o_A 166 VPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDP------------------------------------ 209 (443)
T ss_dssp ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG------------------------------------
T ss_pred EECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCc------------------------------------
Confidence 88776 99999999999999999999999998876433210000
Q ss_pred HHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCc-ccccCCCCccccCCcCCCccceeEEEeec
Q 005867 374 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEV 452 (673)
Q Consensus 374 ~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~-~~~~~~~~~~~~~~~G~~~~~~~v~i~~~ 452 (673)
..+++|.+++||+++++++.+.+.+.+|+++++.||+||+++. ......... ...+.+.+++.++|+|
T Consensus 210 -------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d- 278 (443)
T 2y4o_A 210 -------AESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVETK---DGPVIWEDHFYPEIID- 278 (443)
T ss_dssp -------GGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTTC---CSEEECTTTEEEEEEC-
T ss_pred -------ccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCCC---CceEEccCCeEEEEEc-
Confidence 0148999999999999999999999899999999999998543 332221111 1244566899999999
Q ss_pred CCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCC-CcE-----EEeecCCCeEEcCCcee
Q 005867 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN-GVV-----KIIDRKKNLIKISQGEY 526 (673)
Q Consensus 453 ~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~-G~l-----~~~GR~~d~i~~~~G~~ 526 (673)
+++ ..+++.|+.|||+|+|. ++..|.++||+|||+|+++++ |++ ++.||.||+|++ +|++
T Consensus 279 ~~~-g~~~~~G~~Gel~v~~~------------t~~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~-~G~~ 344 (443)
T 2y4o_A 279 PVT-GEVLPDGSQGELVFTSL------------TKEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIV-RGVN 344 (443)
T ss_dssp TTT-CCBCCTTCCEEEEEEES------------SCSSSCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEE-TTEE
T ss_pred CCC-CCCCCCCCceEEEEeCC------------CcccChhheeecCCEEEEcCCCCCCccccCccccccCCeEEE-CCEE
Confidence 432 24566778999999983 334456899999999999999 986 899999999997 7999
Q ss_pred echHHHHHHHhcCcCcceEEEEecCC---CCeEEEEEecCh--hHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHH
Q 005867 527 VALEYLENVYCVAPIIEDIWVYGDSL---KSMLVAVVVPCE--EDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA 601 (673)
Q Consensus 527 v~~~~iE~~l~~~p~V~~~~v~~~~~---~~~~~a~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 601 (673)
|+|.+||++|.+||+|.+++|++..+ .+.++|+|++.+ +.. .. ..+.+++++.+.+.
T Consensus 345 v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~----------~~---~~~~~~l~~~l~~~----- 406 (443)
T 2y4o_A 345 VFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAAS----------VT---DGERAALARELQHR----- 406 (443)
T ss_dssp ECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTT----------CC---HHHHHHHHHHHHHH-----
T ss_pred ECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCccccc----------ch---hhHHHHHHHHHHHH-----
Confidence 99999999999999999999887432 357889999876 210 00 00223344444443
Q ss_pred HhcccccccccccccccCccc-eeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 005867 602 ERNKVIFANWDTGCFSLLRGF-EHIKGVILDPRPFDMERDLVTATLKKKRNKLLI 655 (673)
Q Consensus 602 ~~~~~~~~~~~~~~~~~Lp~~-~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~ 655 (673)
|+.| .+|..|.+++ ++.+|+|++||++|...++
T Consensus 407 -----------------l~~~~~~p~~v~~v~----~~~lP~t~~GKi~r~~~~r 440 (443)
T 2y4o_A 407 -----------------IKTMVGVSSGVTVLA----AGGIPATATGKARRVIDRR 440 (443)
T ss_dssp -----------------HHHHTCCCCEEEEEC----TTCSCCCTTSCCCSEEECC
T ss_pred -----------------HHHHhCCceEEEEeC----CCcccCccCCcceEEEecc
Confidence 6665 4787888773 2456899999999975443
No 34
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=2.4e-43 Score=381.85 Aligned_cols=333 Identities=16% Similarity=0.147 Sum_probs=249.6
Q ss_pred CCCC-CceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHH-HhHHHhhcCcE
Q 005867 216 PPQP-FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV-IEEYFFRRGAS 293 (673)
Q Consensus 216 ~~~~-~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~-~~~~~l~~G~~ 293 (673)
...+ +++++++|||||||.||+|.++|+++.+.+..+...+.. .++.++|++++.+|+.|..+.. ..+.++..|++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~ 158 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYM--VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL 158 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHH--TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHH--cCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence 3455 899999999999999999999999998776665432211 1678899999999986555544 56677999999
Q ss_pred EEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHH
Q 005867 294 VGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372 (673)
Q Consensus 294 ~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (673)
+++.+. ++..+++.++++++|+++++|+++..|.+.........
T Consensus 159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~----------------------------------- 203 (436)
T 3qov_A 159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDP----------------------------------- 203 (436)
T ss_dssp EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCT-----------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------
Confidence 988866 99999999999999999999999999876543221000
Q ss_pred hHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCc-ccccCCCCccccCCcCCCccceeEEEee
Q 005867 373 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEE 451 (673)
Q Consensus 373 ~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~-~~~~~~~~~~~~~~~G~~~~~~~v~i~~ 451 (673)
.+++||.+++||+++++++.+.+.+.||+++++.||+||+++. ....... . ...|.+.+++.++|+|
T Consensus 204 --------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~---~-~g~~~~~~~~~v~i~d 271 (436)
T 3qov_A 204 --------RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQE---Q-NGMHFWEDCYLVEIID 271 (436)
T ss_dssp --------TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECTT---C-SSEEECTTTEEEEEEC
T ss_pred --------ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecCC---C-CeeEEccCceEEEEEE
Confidence 0148999999999999999999999999999999999999654 3322211 1 2356677899999999
Q ss_pred cCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCCC------c---EEEeecCCCeEEcC
Q 005867 452 VPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG------V---VKIIDRKKNLIKIS 522 (673)
Q Consensus 452 ~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G------~---l~~~GR~~d~i~~~ 522 (673)
.+++ .+++.|+.|||+|+|. +...|.++||+|||+|+++++| + +++.||.||+|++
T Consensus 272 ~~~g--~~~~~g~~Gel~v~~~------------~~~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~- 336 (436)
T 3qov_A 272 PETG--EPVPEGEIGELVLTTL------------DREMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFII- 336 (436)
T ss_dssp TTTC--SBCSTTCCEEEEEEES------------SCCSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEE-
T ss_pred CCCC--CCCCCCCceEEEEecc------------CcCCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEE-
Confidence 3333 4566778999999983 3344568999999999999998 5 6999999999998
Q ss_pred CceeechHHHHHHHhcCcCcceEEEEecCC---CCeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHH
Q 005867 523 QGEYVALEYLENVYCVAPIIEDIWVYGDSL---KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKN 599 (673)
Q Consensus 523 ~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~---~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 599 (673)
+|++|+|.+||++|.+||+|.+++|++..+ .+.++|+|++. +.. .++.. ..+++.+.+++.
T Consensus 337 ~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~---------~~~~~---~~~~l~~~l~~~--- 400 (436)
T 3qov_A 337 KGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLS---------TDNYI---ELEKIRRDIIRQ--- 400 (436)
T ss_dssp TTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTC---------CCCHH---HHHHHHHHHHHH---
T ss_pred CCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-Ccc---------ccchh---hHHHHHHHHHHH---
Confidence 799999999999999999999999988654 35899999988 421 00000 123445555544
Q ss_pred HHHhcccccccccccccccCccc-eeeeEEEEecCCCCCCCCccccccccchHH
Q 005867 600 AAERNKVIFANWDTGCFSLLRGF-EHIKGVILDPRPFDMERDLVTATLKKKRNK 652 (673)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~Lp~~-~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~ 652 (673)
|+.+ .+|..|.+++ .+.+|+|+ ||++|..
T Consensus 401 -------------------l~~~~~~p~~i~~v~----~~~lP~t~-GKi~R~~ 430 (436)
T 3qov_A 401 -------------------LKDEILVTPKVKLVK----KGSLPQSE-GKAVRVK 430 (436)
T ss_dssp -------------------HHHHHSSCCEEEEEC----TTCCC--------CEE
T ss_pred -------------------HHHhcCCceEEEEeC----CCcccCcC-CcceEEE
Confidence 4455 6677888874 23568999 9999853
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=1.3e-42 Score=376.08 Aligned_cols=334 Identities=18% Similarity=0.168 Sum_probs=256.8
Q ss_pred CCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecch-HhHHHHHHhHHHhhcCcEE
Q 005867 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASV 294 (673)
Q Consensus 216 ~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~-~~~~gl~~~~~~l~~G~~~ 294 (673)
...++++++++|||||||.||+|.++|+++...+..+...+.. .++..+|++++.+|+ +|..++...+.++..|+++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 163 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRA--AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTV 163 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEcccccccccchHHHHHHHHcCCEE
Confidence 4467899999999999999999999999988776554432211 167889999999998 6777777778889999999
Q ss_pred EEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHh
Q 005867 295 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA 373 (673)
Q Consensus 295 v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (673)
++.+. ++..+++.++++++|+++++|+++..|.+.........
T Consensus 164 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~------------------------------------ 207 (437)
T 2y27_A 164 IPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDP------------------------------------ 207 (437)
T ss_dssp ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG------------------------------------
T ss_pred EeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc------------------------------------
Confidence 88776 99999999999999999999999998876433210000
Q ss_pred HHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCc-ccccCCCCccccCCcCCCccceeEEEeec
Q 005867 374 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEV 452 (673)
Q Consensus 374 ~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~-~~~~~~~~~~~~~~~G~~~~~~~v~i~~~ 452 (673)
..+++|.+++||+++++++.+.+.+.+|+++++.||+||+++. +........ ...+.+.+++.++|+|
T Consensus 208 -------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d- 276 (437)
T 2y27_A 208 -------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVETK---DGPTIWEDHFYPEIID- 276 (437)
T ss_dssp -------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTTC---SSCEECTTTEEEEEEC-
T ss_pred -------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCCC---CceeEccCceEEEEEc-
Confidence 0148999999999999999999998889999999999998543 332222111 1245567899999999
Q ss_pred CCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECC-CCcE-----EEeecCCCeEEcCCcee
Q 005867 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP-NGVV-----KIIDRKKNLIKISQGEY 526 (673)
Q Consensus 453 ~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~-~G~l-----~~~GR~~d~i~~~~G~~ 526 (673)
++. ..+++.|+.|||+|+|. ++..|.++||+|||+|++++ +|++ ++.||.||+|++ +|++
T Consensus 277 ~~~-g~~~~~g~~Gel~v~~~------------t~~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~-~G~~ 342 (437)
T 2y27_A 277 PET-GEVLPDGELGELVFTSL------------TKEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIV-RGVN 342 (437)
T ss_dssp TTT-CCBCCTTCCEEEEEEES------------SCSSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEE-TTEE
T ss_pred CCC-CCCCCCCCccEEEEecC------------CcCCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEE-CCeE
Confidence 443 34566788999999982 33445689999999999998 6985 899999999997 8999
Q ss_pred echHHHHHHHhcCcCcceEEEEecC---CCCeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHh
Q 005867 527 VALEYLENVYCVAPIIEDIWVYGDS---LKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAER 603 (673)
Q Consensus 527 v~~~~iE~~l~~~p~V~~~~v~~~~---~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 603 (673)
|+|.+||++|.+||+|.+++|++.+ ..+.++|+|++.++... + ..+.+++++.+.+.
T Consensus 343 v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~----------~---~~~~~~l~~~l~~~------- 402 (437)
T 2y27_A 343 VFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAP----------D---TAAIQVAKQALAYD------- 402 (437)
T ss_dssp ECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTTT----------C---HHHHHHHHHHHHHH-------
T ss_pred ECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCccc----------h---hhhHHHHHHHHHHH-------
Confidence 9999999999999999999888743 23589999998864310 0 00223344444443
Q ss_pred cccccccccccccccCccc-eeeeEEEEecCCCCCCCCccccccccchHH
Q 005867 604 NKVIFANWDTGCFSLLRGF-EHIKGVILDPRPFDMERDLVTATLKKKRNK 652 (673)
Q Consensus 604 ~~~~~~~~~~~~~~~Lp~~-~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~ 652 (673)
|+.| .+|..|.+++ ++.+|+|+ ||++|..
T Consensus 403 ---------------l~~~~~~p~~v~~v~----~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 403 ---------------IKSLIGVTAVINVLP----VNGIERSV-GKARRVV 432 (437)
T ss_dssp ---------------HHHHHCCCEEEEECC----TTCSCCCS-SSCCCEE
T ss_pred ---------------HHHhcCCceEEEEeC----CCCccCCC-CcceEEE
Confidence 6666 4787887773 24568999 9999964
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.95 E-value=5.1e-27 Score=247.86 Aligned_cols=239 Identities=18% Similarity=0.170 Sum_probs=173.2
Q ss_pred CCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecch-HhHHHHHHhHHHhhcCcEEE
Q 005867 217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASVG 295 (673)
Q Consensus 217 ~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~-~~~~gl~~~~~~l~~G~~~v 295 (673)
..++++++++|||||||.||+|.++|+++...+......+.. .++..+|++++.+|+ +|..|+...+.++..|+ ++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v 164 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQH--RPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MF 164 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTT--STTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHh--hCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EE
Confidence 467889999999999999999999999999988754433221 267889999999999 99999888777888999 44
Q ss_pred EecC-CHH-----------------------HHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 005867 296 YYHG-DLN-----------------------ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY 351 (673)
Q Consensus 296 ~~~~-~~~-----------------------~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (673)
+... ++. .+++.++++++|+++++|+++..|++.....
T Consensus 165 ~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~------------------ 226 (369)
T 3hgu_A 165 FSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVV------------------ 226 (369)
T ss_dssp ECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHH------------------
T ss_pred ECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhh------------------
Confidence 4433 666 7788999999999999999999986542111
Q ss_pred HHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHH-Hhc-CCceeeecCCCCCCCcccccCC
Q 005867 352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR-VTC-CAFLVQGYGLTETCGPTTVCFP 429 (673)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~-~~~-g~~v~~~YG~tE~~~~~~~~~~ 429 (673)
...+ ++||.+++||+++++++.+.+. +.| ++++++.||+||+++++..+..
T Consensus 227 -------------------~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~ 279 (369)
T 3hgu_A 227 -------------------LQMK--------QSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI 279 (369)
T ss_dssp -------------------HHHH--------HHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB
T ss_pred -------------------cccc--------CCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc
Confidence 0111 3899999999999999999999 899 8999999999999876643321
Q ss_pred CCccccCCcCCC------ccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEE
Q 005867 430 DEMCMVGTAGPV------SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI 503 (673)
Q Consensus 430 ~~~~~~~~~G~~------~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~ 503 (673)
.++|.+ +++++++|+| +++ ..+++.|+.|||+|++... ..+ --+|+|||++..
T Consensus 280 ------~~~G~~~~~~~~~~~~~v~ivD-~~~-g~~vp~G~~GEl~vt~l~~------------~~~-l~ry~tgD~~~~ 338 (369)
T 3hgu_A 280 ------TSESQQVIYDSFSPFITYDVVD-SIT-AQTVEYGERGNVIVTHLSP------------WAF-YPRVAERDTAIR 338 (369)
T ss_dssp ------CTTCSSCEEECCTTTEEEEEEC-TTT-CSBCCTTCEEEEEEEEEET------------TEE-EEEEEEEEEEEE
T ss_pred ------ccCCCcccccCCCCCeEEEEEC-CCC-CcCCCCCCceEEEEEEcCc------------ccc-cccccCCceEEE
Confidence 248888 9999999999 522 2466678999999997321 111 124889999888
Q ss_pred CCC--C-------cEEEeecCCCeEEcCCce
Q 005867 504 LPN--G-------VVKIIDRKKNLIKISQGE 525 (673)
Q Consensus 504 ~~~--G-------~l~~~GR~~d~i~~~~G~ 525 (673)
.+. | .+..++|.++..++ .|.
T Consensus 339 ~~~~~g~~~d~~~~v~~~~~~~~~~~i-~gv 368 (369)
T 3hgu_A 339 LPGVSGFAGDRLADIEPLKISEGRKVI-EGV 368 (369)
T ss_dssp ECCSTTCSSCEEEEEEECC------------
T ss_pred ecCCCCCcCcccccceeccccCCCcee-eec
Confidence 543 2 25567777777766 353
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.30 E-value=4.6e-12 Score=107.59 Aligned_cols=52 Identities=8% Similarity=0.040 Sum_probs=44.8
Q ss_pred ecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChh
Q 005867 513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEE 565 (673)
Q Consensus 513 GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~ 565 (673)
.|.||||++ +|.+|+|.+||++|.+||+|.+++|++.+++ +.+.++|+..++
T Consensus 1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~ 55 (109)
T 3lax_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQL 55 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTT
T ss_pred CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeec
Confidence 489999998 7999999999999999999999999886543 368888887764
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.14 E-value=1e-10 Score=99.00 Aligned_cols=99 Identities=14% Similarity=0.074 Sum_probs=63.7
Q ss_pred ecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCC---CCeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHH
Q 005867 513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL---KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL 589 (673)
Q Consensus 513 GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~---~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (673)
||.||+|++ +|.+++|.+||++|.+||+|.++++++.++ .+.+++++++ ++.. .++. ...+++
T Consensus 1 GR~~D~Iiv-~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~---------~~~~---~~~~~l 66 (109)
T 3gxs_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLF---------TDDY---GRLQAL 66 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTC---------CCCH---HHHHHH
T ss_pred CCccCEEEE-CCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCcc---------ccch---hHHHHH
Confidence 899999997 799999999999999999999887776433 2478888887 4310 0000 012344
Q ss_pred HHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchH
Q 005867 590 QNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRN 651 (673)
Q Consensus 590 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~ 651 (673)
.+.+.+.+.+.+. + +..+.+++ .+.+|+| +||++|.
T Consensus 67 ~~~i~~~l~~~~~----------------~-----~~~v~~v~----~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 67 TREITRQLKDEIL----------------V-----TPRVKLVP----KGALPKS-EGKAVRV 102 (109)
T ss_dssp HHHHHHHHHHHHS----------------S-----CCEEEEEC----TTCSCCC----CCCE
T ss_pred HHHHHHHHHHhhC----------------C-----ceEEEEEC----CCCccCC-CCceEEE
Confidence 5555555443322 2 22677764 2467899 9999884
No 39
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.68 E-value=1e-07 Score=103.31 Aligned_cols=133 Identities=19% Similarity=0.167 Sum_probs=81.3
Q ss_pred Cc---eeEEEEcCCCCCHHHHHHHHHhc-CCcee-eecCCCCCCCcccccCCCCccccCCcCC-Cccc-eeEEEeecCCC
Q 005867 383 GR---LRLVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGP-VSVY-SELRLEEVPEM 455 (673)
Q Consensus 383 ~~---lr~i~~~G~~l~~~~~~~~~~~~-g~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~-~~v~i~~~~~~ 455 (673)
++ +..++.||. ......++..+ +.+++ ..|++||+- +.....+. ..+...+. .+++ .-...++.++.
T Consensus 297 Pnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p~--~~~~~~~~~L~~~~~ffEFip~~~~ 370 (581)
T 4eql_A 297 PNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETT-FGINLDPL--CKPEDVSYTFMPNMSYFEFIPMDGG 370 (581)
T ss_dssp TTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCE-EEECSCTT--SCGGGCCEEECTTSSEEEEEECSTT
T ss_pred CCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccce-eeeccCCC--CCcccCceeecCCcEEEEEEecccc
Confidence 56 555556662 44445555555 67777 899999963 22211111 11111221 1122 22233332111
Q ss_pred -CC-----CCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECC----CCcEEEeecCCCeEEcCCce
Q 005867 456 -GY-----SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKISQGE 525 (673)
Q Consensus 456 -~~-----~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~----~G~l~~~GR~~d~i~~~~G~ 525 (673)
.. ..+..|+.+||.++.- .|.|+ |++||+.++.. ..++.|.||.+++|++ .|+
T Consensus 371 ~~~~~v~l~eVe~G~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~-~Ge 433 (581)
T 4eql_A 371 DKNDVVDLEDVKLGCTYEPVVTNF---AGLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSI-DSD 433 (581)
T ss_dssp CCSSCEEGGGCCTTCEEEEEEECS---SSCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECS-SSC
T ss_pred CCCcEeCHHHcCCCceEEEEEeec---cceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEe-eee
Confidence 11 2233567899999874 23332 99999999975 4579999999999997 799
Q ss_pred eechHHHHHHHhc
Q 005867 526 YVALEYLENVYCV 538 (673)
Q Consensus 526 ~v~~~~iE~~l~~ 538 (673)
+++..+||++|.+
T Consensus 434 kl~~~~v~~al~~ 446 (581)
T 4eql_A 434 KTNEEDLFKAVSQ 446 (581)
T ss_dssp CEEHHHHHHHHHH
T ss_pred ECCHHHHHHHHHH
Confidence 9999999999964
No 40
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.64 E-value=9.7e-07 Score=95.87 Aligned_cols=158 Identities=12% Similarity=0.096 Sum_probs=91.3
Q ss_pred Ccee---EEEEcCCCCCHHHHHHHHHhc-CCcee-eecCCCCCCCcccccCCCCccccCCcCC-Cccc-eeEEEeecCCC
Q 005867 383 GRLR---LVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGP-VSVY-SELRLEEVPEM 455 (673)
Q Consensus 383 ~~lr---~i~~~G~~l~~~~~~~~~~~~-g~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~-~~v~i~~~~~~ 455 (673)
++++ .++.|| + ......++..+ +.+++ ..|++||+-. .....+. ..+...+. .+++ .=...++.++.
T Consensus 302 Pnlk~l~~~~tG~--~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~-gi~~~p~--~~p~~~~~~L~p~~~ffEFIP~~~~ 375 (609)
T 4b2g_A 302 PNTKYLDVIVTGA--M-AQYIPTLDYYSGGLPLACTMYASSECYF-GLNLNPM--SKPSEVSYTIMPNMAYFEFLPHEHS 375 (609)
T ss_dssp TTCCEEEEECSGG--G-GGGHHHHHHHHTSCCEECCEEECSSCEE-EECSCTT--SCGGGCCEEECTTSCEEEEEEGGGT
T ss_pred CCCcEEEEEccCC--h-HHHHHHHHHHcCCCccccCcccccceee-eeecCCC--CCcccCceeecCCcEEEEEEecccc
Confidence 5644 445555 2 33445555555 67777 8999999732 2221111 11111111 1121 12223332211
Q ss_pred ------C-------CCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECC----CCcEEEeecCCCe
Q 005867 456 ------G-------YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNL 518 (673)
Q Consensus 456 ------~-------~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~----~G~l~~~GR~~d~ 518 (673)
. ...+..|+.+||.++.- .|+|+ |++||+.++.. ..++.|+||.+++
T Consensus 376 ~~~~~~~~~~~~v~l~eVe~G~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~ 439 (609)
T 4b2g_A 376 SIPLSRDSPPRLVDLAHVEVGKEYELVITTY---AGLYR-------------YRVGDILRVTGFHNSAPQFHFVRRKNVL 439 (609)
T ss_dssp TSCCCSSSCCCCEEGGGCCTTCEEEEEEECT---TSCCS-------------EEEEEEEEEEEEETTEEEEEEEEETTCC
T ss_pred ccccccCCCCccccHhHcCCCCeEEEehhhh---hhhhh-------------eecCCEEEEeecCCCCcEEEEEEecCCe
Confidence 0 12244667899999763 35443 99999999973 4689999999999
Q ss_pred EEcCCceeechHHHHHHHhc------Cc--CcceEEEEecCC--CCeEEEEEecC
Q 005867 519 IKISQGEYVALEYLENVYCV------AP--IIEDIWVYGDSL--KSMLVAVVVPC 563 (673)
Q Consensus 519 i~~~~G~~v~~~~iE~~l~~------~p--~V~~~~v~~~~~--~~~~~a~v~~~ 563 (673)
|++ .|+++++.+||+++.. .. .|.|..++.... +..-+.++++.
T Consensus 440 l~~-~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~~~~p~Hyv~~wEl~ 493 (609)
T 4b2g_A 440 LSI-DSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTKTIPGHYVIYWELL 493 (609)
T ss_dssp BCS-SSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred EEc-cccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCCCCCCCcEEEEEEEe
Confidence 997 7999999999999952 22 345555544221 23445555553
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.48 E-value=1.3e-06 Score=94.38 Aligned_cols=162 Identities=19% Similarity=0.118 Sum_probs=92.8
Q ss_pred HcCCceeEE--EEcCCCCCHHHHHHHHHhc-CCcee-eecCCCCCCCcccccCCCCccccCCcCC-Cccce-eEEEeecC
Q 005867 380 RLGGRLRLV--ISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGP-VSVYS-ELRLEEVP 453 (673)
Q Consensus 380 ~~~~~lr~i--~~~G~~l~~~~~~~~~~~~-g~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~~-~v~i~~~~ 453 (673)
.+-++++.| +++|. + ......++..+ +.++. ..|++||+-. .....+ ...++..+. .+|+. =...++.+
T Consensus 299 ~lWPnl~~i~~~~~G~-~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~-gi~~~p--~~~~~~~~~~L~p~~~ffEFiP~~ 373 (581)
T 4epl_A 299 ALFPNAKYVYGIMTGS-M-EPYVPKLRHYAGDLPLVSHDYGSSEGWI-AANVTP--RLSPEEATFAVIPNLGYFEFLPVS 373 (581)
T ss_dssp HHCTTCCCEEEECSGG-G-GGGHHHHHHHHTTSCEEECCEEETTEEE-EECCCT--TSCTTTCCEEECTTSCEEEEEEC-
T ss_pred HhCCCCceEEEEeCCC-h-HHHHHHHHHHcCCCccccCceeccceee-eeecCC--CCCccccceeecCCcEEEEEEecc
Confidence 344677633 34442 2 33345565555 67777 8999999732 222111 111111121 12221 12222211
Q ss_pred CC-C-------CCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECC----CCcEEEeecCCCeEEc
Q 005867 454 EM-G-------YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKI 521 (673)
Q Consensus 454 ~~-~-------~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~----~G~l~~~GR~~d~i~~ 521 (673)
+. . ...+..|+.+||.++.-. |.|+ |++||+.++.. ..++.|.||.++++++
T Consensus 374 ~~~~~~~~~v~l~eve~G~~YelviTt~~---GL~R-------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~ 437 (581)
T 4epl_A 374 ETGEGEEKPVGLTQVKIGEEYEVVITNYA---GLYR-------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSI 437 (581)
T ss_dssp ------CCCEEGGGCCTTCEEEEEEESTT---SCSS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS
T ss_pred cccCCCCceeeHHHcCCCCeEEEEEeecc---ceee-------------EEcCCEEEEecccCCCcEEEEEeecCCeEEe
Confidence 11 1 123445678999998742 3332 99999999864 2479999999999998
Q ss_pred CCceeechHHHHHHHhc------Cc--CcceEEEEecCC--CCeEEEEEecC
Q 005867 522 SQGEYVALEYLENVYCV------AP--IIEDIWVYGDSL--KSMLVAVVVPC 563 (673)
Q Consensus 522 ~~G~~v~~~~iE~~l~~------~p--~V~~~~v~~~~~--~~~~~a~v~~~ 563 (673)
.|+++++.+||+++.. .. .|.|..++.... +..-+.+.++.
T Consensus 438 -~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~hyv~~wE~~ 488 (581)
T 4epl_A 438 -NIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGHYAIFWEIS 488 (581)
T ss_dssp -SSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSCEEEEEEEES
T ss_pred -eeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCCcEEEEEeec
Confidence 7999999999999953 22 356666655322 23445555654
No 42
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=91.36 E-value=1.3 Score=46.43 Aligned_cols=107 Identities=13% Similarity=0.062 Sum_probs=81.0
Q ss_pred CCCCCceeeeecccCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--HhHHHHHHHHHhcCCeEee
Q 005867 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVP 130 (673)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~--~e~~~~~lA~~~~G~~~vp 130 (673)
.++.++.+.. ..|.+|..+ .+|...+...+..++..+...|+.++|++....+.+ .......++++..|+.+++
T Consensus 88 ~~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 88 PQDRISRIHA--SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp CGGGCCEEEE--CCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred ChhHeEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 3455664433 266666543 678999988888888877778999999999988863 3334457888899999987
Q ss_pred CCCCCChhhHHHHHhccCceEEEEcchhhhhhhc
Q 005867 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS 164 (673)
Q Consensus 131 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 164 (673)
++.. +++.+...+++.++.++++.......+..
T Consensus 166 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~ 198 (437)
T 2y27_A 166 FGGG-QTEKQVQLIQDFRPDIIMVTPSYMLSIAD 198 (437)
T ss_dssp CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred CCCC-CHHHHHHHHHHhCCCEEEECHHHHHHHHH
Confidence 7654 78889999999999999998887665543
No 43
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=90.70 E-value=1.5 Score=46.09 Aligned_cols=105 Identities=13% Similarity=0.085 Sum_probs=80.3
Q ss_pred CCCCceeeeecccCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--HhHHHHHHHHHhcCCeEeeC
Q 005867 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPL 131 (673)
Q Consensus 56 pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~--~e~~~~~lA~~~~G~~~vpl 131 (673)
++.++.+.. ..|.+|..+ .+|...+...+..++..+...|+.++|++...++.+ .......++++..|+.++++
T Consensus 91 ~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 91 REQVVRVHA--SSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp GGGCCEEEE--ECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred hhheEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 455554432 266677654 678999988888888877788999999999988864 33345578888899999887
Q ss_pred CCCCChhhHHHHHhccCceEEEEcchhhhhhh
Q 005867 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELL 163 (673)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 163 (673)
+.. .++.+...+++.++.+++........+.
T Consensus 169 ~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~ 199 (443)
T 2y4o_A 169 SGG-QTEKQVQLIRDFEPKIILVTPSYMLNLI 199 (443)
T ss_dssp CSC-CHHHHHHHHHHHCCSEEEECHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHhCCcEEEECHHHHHHHH
Confidence 654 7888999999999999999887766553
No 44
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=89.80 E-value=2.6 Score=44.00 Aligned_cols=123 Identities=8% Similarity=-0.058 Sum_probs=89.5
Q ss_pred CCCceeeeecccCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--HhHHHHHHHHHhcCCeEeeCC
Q 005867 57 GNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPLY 132 (673)
Q Consensus 57 d~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~--~e~~~~~lA~~~~G~~~vpl~ 132 (673)
+.+|++.. ..|.+|..+ .+|...+...+..++..+...|+.++|++....+-+ ...+..+++++..|+.+++.+
T Consensus 86 ~~~a~i~~--TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 163 (436)
T 3qov_A 86 RDGVRIHS--SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA 163 (436)
T ss_dssp HHEEEEEE--CSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred CCeEEEEE--CCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence 45554433 266666544 678999998888888888888999999999988754 344556788889999988876
Q ss_pred CCCChhhHHHHHhccCceEEEEcchhhhhhhccccc-----ccccceEEEEeCCC
Q 005867 133 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-----SAQRLRVMVCFTSL 182 (673)
Q Consensus 133 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~ 182 (673)
.. .++.+...+++.++.+++........+...... ....++.++.-+..
T Consensus 164 ~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 217 (436)
T 3qov_A 164 AG-NSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEP 217 (436)
T ss_dssp SC-CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSC
T ss_pred CC-CHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCc
Confidence 54 678899999999999999998877666443211 13456666665544
No 45
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=86.70 E-value=7 Score=41.58 Aligned_cols=122 Identities=7% Similarity=0.007 Sum_probs=85.4
Q ss_pred CCCCCceeeeecccCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHh-HHHHHHHHHhcCCeEeeC
Q 005867 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ-WVEAMEACNALSLICVPL 131 (673)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e-~~~~~lA~~~~G~~~vpl 131 (673)
.|+.+|++.. ..|.+|..+ .+|...+...+..+.. ..++.++|++...+|-.-. .+..+++++..|+.++..
T Consensus 161 ~~~d~a~i~~--TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 161 NLDDIASIMF--TSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CTTSEEEEEE--CCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 4677776554 256666544 6788888776665544 3488999999988886533 233467788889998877
Q ss_pred CCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCC
Q 005867 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182 (673)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 182 (673)
+ ..+++.+...+++.++.+++........+..........++.++.-+..
T Consensus 236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~~ 285 (501)
T 3ipl_A 236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGAK 285 (501)
T ss_dssp S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSSC
T ss_pred C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCCC
Confidence 5 4678999999999999999999988777655433333355666555443
No 46
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=80.19 E-value=7.1 Score=39.57 Aligned_cols=106 Identities=14% Similarity=0.066 Sum_probs=71.2
Q ss_pred CCCCCceeeeecccCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcH--hHHHHHHHHHhcCCeEee
Q 005867 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP--QWVEAMEACNALSLICVP 130 (673)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~--e~~~~~lA~~~~G~~~vp 130 (673)
.++.++.+.. ..|.+|..+ .+|...+...+..++..+...|+.++|++...+|-+. --....++++..|+.+++
T Consensus 89 ~~~~~a~i~~--TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~ 166 (369)
T 3hgu_A 89 PADSHPQVYE--SGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS 166 (369)
T ss_dssp CTTCCCEEEE--ECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred CccccEEEEE--CCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence 3455565543 266666654 5688888888777766677779999999999988632 223344555888996665
Q ss_pred CCCCCChh-----------------------hHHHHHhccCceEEEEcchhhhhhhc
Q 005867 131 LYDTLGPG-----------------------AVNFILDHAEIDFVFVQDKKVKELLS 164 (673)
Q Consensus 131 l~~~~~~~-----------------------~l~~~l~~~~~~~vi~~~~~~~~~~~ 164 (673)
.. ..+. .+...+++.++.++++.......+.+
T Consensus 167 ~~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~ 221 (369)
T 3hgu_A 167 ID--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLK 221 (369)
T ss_dssp CC--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTT
T ss_pred cc--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHh
Confidence 43 2343 66668899999999998887776643
No 47
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=79.79 E-value=20 Score=38.37 Aligned_cols=122 Identities=7% Similarity=-0.081 Sum_probs=84.3
Q ss_pred CCCCCceeeeecccCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhH--HH-HHHHHHhcCCeEe
Q 005867 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW--VE-AMEACNALSLICV 129 (673)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~--~~-~~lA~~~~G~~~v 129 (673)
.|+.+|++.. +.|.+|..+ .+|.+.+...+...... .++.++|++...+|-+..+ .. .+++.+..|+.++
T Consensus 180 ~~~d~a~i~~--TSGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 180 KSSDVAFLQL--SGGSTGLSKLIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CTTSEEEEEE--CCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CcCceEEEEe--CCCcCCCCcEEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 4666766544 256666543 68888887776655443 4788999998888866433 33 4788889999988
Q ss_pred eCCCCCChhhHHHHHhccCceEEEEcchhhhhhhccc---ccccccceEEEEeCCC
Q 005867 130 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTSL 182 (673)
Q Consensus 130 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~ 182 (673)
..+ ...++.+...+++.++.+++........+.... ....+.++.++.-+..
T Consensus 255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~ 309 (539)
T 1mdb_A 255 LSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAK 309 (539)
T ss_dssp ECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSC
T ss_pred ECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCC
Confidence 765 467888999999999999999887766654322 1233456666665544
No 48
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=79.47 E-value=12 Score=40.45 Aligned_cols=122 Identities=11% Similarity=-0.009 Sum_probs=82.8
Q ss_pred CCCceeeeecccCCCCCc--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhH--HHHHHHHHhcCCeEeeCC
Q 005867 57 GNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW--VEAMEACNALSLICVPLY 132 (673)
Q Consensus 57 d~~a~~~~~~~d~~~~~~--~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~--~~~~lA~~~~G~~~vpl~ 132 (673)
+.+|++.. +.|.+|.. ..+|.+.+...+......+...++.++|++...+|-.-.+ ...+++.+ .|+.++.++
T Consensus 192 ~d~a~i~~--TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~ 268 (548)
T 2d1s_A 192 EQVALIMN--SSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT 268 (548)
T ss_dssp TCEEEEEC--CSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC
T ss_pred CCEEEEEe--CCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC
Confidence 66666543 25656553 4688988877766555433335788999998888865433 33356777 999988775
Q ss_pred CCCChhhHHHHHhccCceEEEEcchhhhhhhcccc---cccccceEEEEeCCC
Q 005867 133 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFTSL 182 (673)
Q Consensus 133 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~ 182 (673)
...++.+...+++.++.+++........+..... .....++.++.-+..
T Consensus 269 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~ 320 (548)
T 2d1s_A 269 -KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAP 320 (548)
T ss_dssp -CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSC
T ss_pred -CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCcc
Confidence 5678999999999999999999887776644321 123455666655443
No 49
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=75.73 E-value=14 Score=40.49 Aligned_cols=123 Identities=13% Similarity=0.011 Sum_probs=86.4
Q ss_pred CCCCCceeeeecccCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHH-HHHHHHHhcCCeEeeC
Q 005867 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV-EAMEACNALSLICVPL 131 (673)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~-~~~lA~~~~G~~~vpl 131 (673)
.|+.+|++.. +.|.+|..+ .+|.+.+...+.. ....++.++|+++...+-+.+.- ..+++.+..|+.++..
T Consensus 162 ~~~d~a~iiy--TSGSTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 235 (620)
T 4dg8_A 162 AADQIAYINF--SSGTTGRPKAIACTHAGITRLCLG----QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLN 235 (620)
T ss_dssp CTTSEEEEEE--EBSSSSSCEEEEEEHHHHHHHHSS----CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEE--CCCccccCeEEEEchHHHHHHHHH----HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeC
Confidence 4667766543 267777655 6777776543322 22347889999999998775543 3467888999988876
Q ss_pred C-CCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCc
Q 005867 132 Y-DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLT 183 (673)
Q Consensus 132 ~-~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 183 (673)
+ ....++.+...+++.++.++.........+..........++.++.-+...
T Consensus 236 ~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe~l 288 (620)
T 4dg8_A 236 DLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGDIL 288 (620)
T ss_dssp CSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSCC
T ss_pred ccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEeCcC
Confidence 4 356788999999999999999988877766554444556677777766543
No 50
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=74.55 E-value=17 Score=38.98 Aligned_cols=103 Identities=11% Similarity=-0.054 Sum_probs=73.7
Q ss_pred CCCCCceeeeecccCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhH--HH-HHHHHHhcCCeEe
Q 005867 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW--VE-AMEACNALSLICV 129 (673)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~--~~-~~lA~~~~G~~~v 129 (673)
.|+.+|++.. +.|.+|..+ .+|...+...+...+.. .++.++|++...+|.+..+ .. .+++.+..|+.++
T Consensus 189 ~~~d~a~i~~--TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 263 (544)
T 3o83_A 189 PADEVAFFQL--SGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVV 263 (544)
T ss_dssp CTTSEEEEEE--CCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CccceEEEEE--CCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEE
Confidence 3566666544 256666544 67898888777665543 4889999999988765433 32 4788888999988
Q ss_pred eCCCCCChhhHHHHHhccCceEEEEcchhhhhhh
Q 005867 130 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELL 163 (673)
Q Consensus 130 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 163 (673)
..+. ..+..+...+++.++.++.........+.
T Consensus 264 ~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 296 (544)
T 3o83_A 264 MAPN-PEPLNCFSIIQRHQVNMASLVPSAVIMWL 296 (544)
T ss_dssp ECSS-CCHHHHHHHHHHHTCCEEEECHHHHHHHH
T ss_pred ECCC-CCHHHHHHHHHHHCCCEEEechHHHHHHH
Confidence 7754 57888889999999999999887766553
No 51
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=71.93 E-value=22 Score=37.91 Aligned_cols=101 Identities=7% Similarity=-0.097 Sum_probs=70.6
Q ss_pred CCCCceeeeecccCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHH--HHHHHHhcCCeEeeC
Q 005867 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE--AMEACNALSLICVPL 131 (673)
Q Consensus 56 pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~--~~lA~~~~G~~~vpl 131 (673)
|+.+|++.. +.|.+|..+ .+|.+.+...+..++.. .++.++|++...+|-.-.+-. .+++++ .|+.++..
T Consensus 169 ~~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~ 242 (517)
T 3r44_A 169 GDDNLFIMY--TSGTTGHPKGVVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM 242 (517)
T ss_dssp TTSEEEEEE--ECC---CCEEEEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC
T ss_pred CCCeEEEEE--CCcccccCceeeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe
Confidence 455655443 266666644 67888887776665554 488999999998887644333 345555 89888877
Q ss_pred CCCCChhhHHHHHhccCceEEEEcchhhhhhh
Q 005867 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELL 163 (673)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 163 (673)
+ ...++.+...+++.++.++.+.......+.
T Consensus 243 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 273 (517)
T 3r44_A 243 P-QFDATKVWSLIVEERVCIGGAVPAILNFMR 273 (517)
T ss_dssp S-SCCHHHHHHHHHHTTCCEEEECHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHhCCeEEEeHHHHHHHHH
Confidence 4 568889999999999999999887766553
No 52
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=71.85 E-value=23 Score=37.59 Aligned_cols=123 Identities=9% Similarity=-0.049 Sum_probs=81.3
Q ss_pred CCCCCceeeeecccCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhH-HHHHHHHHhcCCeEeeC
Q 005867 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL 131 (673)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~-~~~~lA~~~~G~~~vpl 131 (673)
.|+.+|++.. +.|.+|..+ .+|...+...+..... ..++.++|++...+|-+..+ +..+++.+..|+.++.+
T Consensus 142 ~~~d~a~i~~--TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 216 (512)
T 3fce_A 142 KGDENFYIIY--TSGSTGNPKGVQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAI 216 (512)
T ss_dssp CTTSEEEEEE--ECC----CEEEEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCceEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEEC
Confidence 3455665443 266666544 6788888766655443 45889999999998876433 34578888999998888
Q ss_pred CCC--CChhhHHHHHhccCceEEEEcchhhhhhhcccc---cccccceEEEEeCCC
Q 005867 132 YDT--LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFTSL 182 (673)
Q Consensus 132 ~~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~ 182 (673)
+.. ..++.+...+++.++.+++........+..... ...+.++.++.-+..
T Consensus 217 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~ 272 (512)
T 3fce_A 217 DKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEV 272 (512)
T ss_dssp CHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSC
T ss_pred CHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCc
Confidence 653 467888999999999999999887766543321 223455666655544
No 53
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=70.89 E-value=15 Score=36.99 Aligned_cols=101 Identities=20% Similarity=0.102 Sum_probs=68.1
Q ss_pred CCCCCceeeeecccCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhH-HHHHHHHHhcCCeEeeC
Q 005867 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL 131 (673)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~-~~~~lA~~~~G~~~vpl 131 (673)
++|.+|++.. +.|.+|..+ .+|++.+...+..++. ..++.++|++...+|-+-.+ +..++..+..|+..+..
T Consensus 35 ~~d~~a~Il~--TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~ 109 (358)
T 4gs5_A 35 LGGAREFVLH--TSGSTGMPKPITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVT 109 (358)
T ss_dssp HHTCSEEEEE--EECTTSSEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCEEEEE--CCcccccCcEEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEec
Confidence 3456666543 267777654 7899988877666554 34889999999888866332 33455566778877766
Q ss_pred CCCCChhhHHHHHhccCceEEEEcchhhhhhh
Q 005867 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELL 163 (673)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 163 (673)
++.... ...+++.++.++.........+.
T Consensus 110 ~~~~~~---~~~i~~~~~t~~~~~P~~l~~ll 138 (358)
T 4gs5_A 110 EPTANP---LAGLDHADFDFVAMVPMQLQSIL 138 (358)
T ss_dssp CCCSCT---TTTCSSCCCSEEEECHHHHHHHH
T ss_pred CccccH---HHHHHHhCCeEEEcChHHHHHhh
Confidence 654332 34678889999988887666554
No 54
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=70.54 E-value=35 Score=37.19 Aligned_cols=122 Identities=10% Similarity=-0.070 Sum_probs=83.2
Q ss_pred CCCCceeeeecccCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--HhHHH-HHHHHHhcCCeEee
Q 005867 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVE-AMEACNALSLICVP 130 (673)
Q Consensus 56 pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~--~e~~~-~~lA~~~~G~~~vp 130 (673)
|+.+|++.. +.|.+|..+ .+|.+.+...+...... .++.++|++....|-+ .+... .+++++..|+.++.
T Consensus 183 ~~~~a~ii~--TSGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~ 257 (617)
T 3rg2_A 183 ADEVAYFQL--SGGTTGTPKLIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVL 257 (617)
T ss_dssp TTSEEEEEE--CCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEE
T ss_pred CCCeEEEEE--CCCcCCCCCEeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEE
Confidence 566666543 266666544 67888887776665543 3788999999998854 34333 47788888999887
Q ss_pred CCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccc-----cccccceEEEEeCCCc
Q 005867 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC-----RSAQRLRVMVCFTSLT 183 (673)
Q Consensus 131 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~ 183 (673)
.+. ..+..+...+++.++.++.........+..... .....++.++.-+...
T Consensus 258 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l 314 (617)
T 3rg2_A 258 AAD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARL 314 (617)
T ss_dssp CSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCC
T ss_pred eCC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcC
Confidence 654 567788889999999999998877665543221 1334566666665543
No 55
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=70.47 E-value=33 Score=36.35 Aligned_cols=123 Identities=8% Similarity=-0.114 Sum_probs=83.8
Q ss_pred CCCCCceeeeecccCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhH-HHHHHHHHhcCCeEeeC
Q 005867 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL 131 (673)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~-~~~~lA~~~~G~~~vpl 131 (673)
.++.+|++.. +.|.+|..+ .+|...+...+..+.. ..++.++|++....|-+..+ +..+++++..|+.++.+
T Consensus 141 ~~~~~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 215 (511)
T 3e7w_A 141 KEHETFYIIY--TSGSTGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCV 215 (511)
T ss_dssp CTTSEEEEEE--ECCTTSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEc
Confidence 3456665543 267676654 6788888776655544 35788999999988876443 34478888999998877
Q ss_pred CCC--CChhhHHHHHhccCceEEEEcchhhhhhhccc---ccccccceEEEEeCCC
Q 005867 132 YDT--LGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTSL 182 (673)
Q Consensus 132 ~~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~ 182 (673)
+.. ..++.+...+++.++.+++........+.... ....+.++.++..+..
T Consensus 216 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~ 271 (511)
T 3e7w_A 216 TKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEV 271 (511)
T ss_dssp CHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSC
T ss_pred ChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCC
Confidence 543 46788889999999999999988777654432 1223445555555443
No 56
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=69.11 E-value=26 Score=37.87 Aligned_cols=123 Identities=2% Similarity=-0.200 Sum_probs=83.7
Q ss_pred CCCCCceeeeecccCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHH--HHHHHHhcCCeEee
Q 005867 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE--AMEACNALSLICVP 130 (673)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~--~~lA~~~~G~~~vp 130 (673)
.|+.+|++.. +.|.+|..+ .+|.+.+...+..+.. ..++.++|++...+|-.-.+-. .+++.+..|+.++.
T Consensus 165 ~~~d~a~i~~--TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~ 239 (590)
T 3kxw_A 165 KSNDIAFLQY--TSGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIM 239 (590)
T ss_dssp CTTSEEEEEE--CSSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEe--CcCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEE
Confidence 4566776554 266666543 6899988877766554 3588999999999988755433 37888899999888
Q ss_pred CCCCC---ChhhHHHHHhccCceEEEEcchhhhhhhccc------ccccccceEEEEeCCC
Q 005867 131 LYDTL---GPGAVNFILDHAEIDFVFVQDKKVKELLSPD------CRSAQRLRVMVCFTSL 182 (673)
Q Consensus 131 l~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~------~~~~~~~~~v~~~~~~ 182 (673)
.++.. .+..+...+++.++.++.+.......+.... ......++.++.-...
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~ 300 (590)
T 3kxw_A 240 MSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEP 300 (590)
T ss_dssp CCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSC
T ss_pred eCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCC
Confidence 76532 5778888999999999988776555443321 1123455566555544
No 57
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=68.71 E-value=19 Score=38.95 Aligned_cols=122 Identities=9% Similarity=-0.012 Sum_probs=85.2
Q ss_pred CCCCCceeeeecccCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcH-hHHHHHHHHHhcCCeEeeC
Q 005867 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP-QWVEAMEACNALSLICVPL 131 (673)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~-e~~~~~lA~~~~G~~~vpl 131 (673)
.|+.+|++.. +.|.+|..+ .+|...+...... ....++.++|+++...|-+. -....+++.+..|+.++..
T Consensus 212 ~~~d~a~i~~--TSGTTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 285 (570)
T 4gr5_A 212 GPEDVACVMF--TSGSTGRPKGVMSPHRALTGTYLG----QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQ 285 (570)
T ss_dssp CTTSEEEEEC--CSSCCSSCCCEEEEHHHHHHHHSS----CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEE--CCcCCCCCeEEEEecHHHHHHHHh----hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEc
Confidence 4667766544 256666544 6788776433221 22347889999998888753 3445677888899988877
Q ss_pred CC-CCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCC
Q 005867 132 YD-TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182 (673)
Q Consensus 132 ~~-~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 182 (673)
+. ...+..+...+++.++.++.........+.+........++.++.-...
T Consensus 286 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~lr~~~~gG~~ 337 (570)
T 4gr5_A 286 SGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVRYAITGGEP 337 (570)
T ss_dssp SSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSC
T ss_pred CCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchhhCCCceEEEEeccc
Confidence 54 4577889999999999999999888777765555555667777766654
No 58
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=66.71 E-value=45 Score=35.65 Aligned_cols=106 Identities=9% Similarity=-0.060 Sum_probs=77.8
Q ss_pred CCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHHHhHHHhhcCcEEEEe
Q 005867 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (673)
Q Consensus 218 ~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v~~ 297 (673)
.|+.+|++....+.. .-..-.+|.+.+...+..+...+... ++.++|++...++-+.- .....+.++..|+..+.+
T Consensus 32 ~p~~~A~~~~~~~~~-~~~~~~~Ty~el~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl 107 (549)
T 3g7s_A 32 FGEKTAIISAEPKFP-SEFPESMNFLEICEVTKKLASGISRK--GVRKGEHVGVCIPNSID-YVMTIYALWRVAATPVPI 107 (549)
T ss_dssp HTTSEEEEEESSCCC-CSSCSEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEeCCCccc-ccccceeeHHHHHHHHHHHHHHHHHc--CCCCCCEEEEECCCCHH-HHHHHHHHHHhCCEEEcc
Confidence 466777765532211 11235789999998888888777543 78899999888876532 234567778999998888
Q ss_pred cC--CHHHHHHHhhhccCeEEEcchHHHHHHH
Q 005867 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKIH 327 (673)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~ 327 (673)
+. ....+...+++.+++.++..+.....+.
T Consensus 108 ~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~ 139 (549)
T 3g7s_A 108 NPMYKSFELEHILNDSEATTLVVHSMLYENFK 139 (549)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEChHHHHHHH
Confidence 76 8899999999999999999887766554
No 59
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=65.66 E-value=31 Score=36.78 Aligned_cols=101 Identities=20% Similarity=0.158 Sum_probs=76.4
Q ss_pred CCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHHHhHHHhhcCcEEEEe
Q 005867 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (673)
Q Consensus 218 ~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v~~ 297 (673)
.|+.++++... +| -.+|.+.+...+..+...+... ++.++|++...++-+.- .+...+.++..|+..+.+
T Consensus 35 ~p~~~a~~~~~---~~----~~~Ty~el~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~~-~~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 35 HSSKPCLINGA---NG----DVYTYADVELTARRVASGLNKI--GIQQGDVIMLFLPSSPE-FVLAFLGASHRGAIITAA 104 (536)
T ss_dssp STTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEECC---CC----CEEEHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCcHH-HHHHHHHHHHhCCEEecc
Confidence 46777765422 22 4689999998888888777543 78899999888886532 244567778899998887
Q ss_pred cC--CHHHHHHHhhhccCeEEEcchHHHHHHHH
Q 005867 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKIHE 328 (673)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~ 328 (673)
.. ....+...++..++.+++........+..
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 137 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACYYEKVKD 137 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHH
Confidence 76 88999999999999999998877666544
No 60
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=65.29 E-value=29 Score=36.71 Aligned_cols=98 Identities=12% Similarity=-0.036 Sum_probs=75.7
Q ss_pred CCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHHHhHHHhhcCcEEEEe
Q 005867 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (673)
Q Consensus 218 ~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v~~ 297 (673)
.|+.+|++. .+-.+|.+.+...+..+...+... ++.++|++...++-+.- .....+.++..|+..+.+
T Consensus 19 ~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl 86 (509)
T 3ivr_A 19 FPDRTAFMV---------DGVRLTHRDYLARAERLASGLLRD--GVHTGDRVAILSQNCSE-MIELIGAVALIGAILLPV 86 (509)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSCHH-HHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCCHH-HHHHHHHHHHhCCEEEec
Confidence 467777664 125799999999988888877543 68899999888876532 234567778899998888
Q ss_pred cC--CHHHHHHHhhhccCeEEEcchHHHHHHH
Q 005867 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKIH 327 (673)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~ 327 (673)
+. ....+...+++.++.+++..+.....+.
T Consensus 87 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 118 (509)
T 3ivr_A 87 NYRLNADEIAFVLGDGAPSVVVAGTDYRDIVA 118 (509)
T ss_dssp CTTSCHHHHHHHHHHHCEEEEEECSTTHHHHH
T ss_pred CCCCCHHHHHHHHHhcCceEEEECcchhhhHH
Confidence 76 8899999999999999999887665543
No 61
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=64.99 E-value=31 Score=37.27 Aligned_cols=124 Identities=11% Similarity=-0.070 Sum_probs=81.5
Q ss_pred CCCCCceeeeecccCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHH--HHHHHHHhcCCeEee
Q 005867 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--EAMEACNALSLICVP 130 (673)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~--~~~lA~~~~G~~~vp 130 (673)
.|+.+|++.. +.|.+|..+ .+|.. +...... ......++.++|++....+.+..+- ..+++.+..|+..+.
T Consensus 204 ~~~d~a~i~~--TSGTTG~PKgV~~sh~-~~~~~~~--~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~ 278 (570)
T 3c5e_A 204 GSQEASAIYF--TSGTSGLPKMAEHSYS-SLGLKAK--MDAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFV 278 (570)
T ss_dssp BTTSEEEEEE--CCCSSSSCCEEEEEHH-HHHHHHH--HHTTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEE
T ss_pred CCCCcEEEEE--CCCCCCCCCEEEechH-HHHhhhh--hhhhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEE
Confidence 3566666543 266666554 66777 4331111 1123458899999988888765443 346778888998877
Q ss_pred CCC-CCChhhHHHHHhccCceEEEEcchhhhhhhccccc--ccccceEEEEeCCCc
Q 005867 131 LYD-TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR--SAQRLRVMVCFTSLT 183 (673)
Q Consensus 131 l~~-~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~ 183 (673)
... ...++.+...+++.++.+++........+...... ..+.++.++..+...
T Consensus 279 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe~l 334 (570)
T 3c5e_A 279 HLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESL 334 (570)
T ss_dssp ECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESSCC
T ss_pred ecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCCcC
Confidence 653 67889999999999999999999887776553211 234566666655443
No 62
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=64.85 E-value=15 Score=39.55 Aligned_cols=102 Identities=12% Similarity=0.029 Sum_probs=75.5
Q ss_pred CceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHHHhHHHhhcCcEEEEecC
Q 005867 220 FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG 299 (673)
Q Consensus 220 ~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v~~~~ 299 (673)
+.++++.+..+.++ ..+|.+.+...+..+...+... ++.++|++...++-+.- .+...+.++..|+..+.+..
T Consensus 35 ~~~a~~a~~~~~~~----~~~Ty~el~~~~~~lA~~L~~~--Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl~~ 107 (550)
T 3rix_A 35 LVPGTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRY--GLNTNHRIVVCSENSLQ-FFMPVLGALFIGVAVAPAND 107 (550)
T ss_dssp TSTTCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHH--TCCTTCEEEEECSSCTT-THHHHHHHHHHTCEEEECCT
T ss_pred CCceEEEeeecCCC----cEeEHHHHHHHHHHHHHHHHHh--CCCCCCEEEEEcCCccc-HHHHHHHHHHcCCEEeecCC
Confidence 44454444443333 4689999999888888777544 78899999888875532 23456677889999888776
Q ss_pred --CHHHHHHHhhhccCeEEEcchHHHHHHHH
Q 005867 300 --DLNALRDDLMELKPTLLAGVPRVFEKIHE 328 (673)
Q Consensus 300 --~~~~~~~~i~~~~~t~l~~~P~~~~~l~~ 328 (673)
....+...++..++++++........+..
T Consensus 108 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 138 (550)
T 3rix_A 108 IYNERELLNSMNISQPTVVFVSKKGLQKILN 138 (550)
T ss_dssp TCCHHHHHHHHHHHCCSEEEECGGGHHHHHH
T ss_pred cCCHHHHHHHHHhcCCeEEEEcHHHHHHHHH
Confidence 88999999999999999998887766544
No 63
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=64.73 E-value=42 Score=35.81 Aligned_cols=101 Identities=10% Similarity=-0.127 Sum_probs=74.8
Q ss_pred CCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHHHhHHHhhcCcEEEEe
Q 005867 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (673)
Q Consensus 218 ~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v~~ 297 (673)
.++.++++....+ ....+|.+.+...+..+...+... ++.++|++...++-+. -.+...+.++..|+..+.+
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~--Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~vpl 102 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRAL--GVGVGDRVATLGFNHF-RHLEAYFAVPGMGAVLHTA 102 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCcH-HHHHHHHHHHhcCcEEEec
Confidence 3556666543211 245789999998888887776443 6889999988888653 2234566778899998888
Q ss_pred cC--CHHHHHHHhhhccCeEEEcchHHHHHH
Q 005867 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKI 326 (673)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l 326 (673)
+. ....+...+++.++.+++..+.....+
T Consensus 103 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 103 NPRLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred CcccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 76 888999999999999999988766544
No 64
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=63.44 E-value=34 Score=37.65 Aligned_cols=124 Identities=9% Similarity=0.012 Sum_probs=83.3
Q ss_pred CCCCceeeeecccCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHH--HHHHHHHhcCCeEeeC
Q 005867 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--EAMEACNALSLICVPL 131 (673)
Q Consensus 56 pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~--~~~lA~~~~G~~~vpl 131 (673)
|+.+|++.. +.|.+|..+ .+|.+.+...+..... ...++.++|++....+-+..+- ..+++.+..|++++..
T Consensus 255 ~~d~a~ily--TSGTTG~PKgV~~sh~~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~ 330 (652)
T 1pg4_A 255 AEDPLFILY--TSGSTGKPKGVLHTTGGYLVYAATTFK--YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMF 330 (652)
T ss_dssp TTSEEEEEE--ECCSSSSCEEEEEESHHHHHHHHHHHH--HHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEE
T ss_pred CCCCEEEEe--ccCCCCCCceEEECchHHHHHHHHHHH--HhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEE
Confidence 456665543 267777655 5677766544322111 2357889999988887764443 3467889999999887
Q ss_pred CCC---CChhhHHHHHhccCceEEEEcchhhhhhhcccc-----cccccceEEEEeCCCc
Q 005867 132 YDT---LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC-----RSAQRLRVMVCFTSLT 183 (673)
Q Consensus 132 ~~~---~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~ 183 (673)
+.. ..++.+..++++.++.++.+.......+..... ...+.++.++..+...
T Consensus 331 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l 390 (652)
T 1pg4_A 331 EGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPI 390 (652)
T ss_dssp CSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCC
T ss_pred CCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCC
Confidence 642 467889999999999999999988777655432 1235567776666543
No 65
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=59.19 E-value=34 Score=37.00 Aligned_cols=124 Identities=8% Similarity=-0.118 Sum_probs=80.2
Q ss_pred CCCCCceeeeecccCCCCCceee--eHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHH--HHHHHHhcCCeEee
Q 005867 55 YPGNRMLGWRPFVDGKFGPYVWK--TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE--AMEACNALSLICVP 130 (673)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~~~--Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~--~~lA~~~~G~~~vp 130 (673)
.|+.+|++.. +.|.+|..+-+ |...+...+ .......++.+++++....+.+..... .+++.+..|+.++.
T Consensus 223 ~~~d~a~i~~--TSGTTG~PKgV~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 297 (580)
T 3etc_A 223 KNEDICLVYF--SSGTAGFPKMVEHDNTYPLGHI---LTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFV 297 (580)
T ss_dssp CTTSEEEEEE--ECCSSSSCEEEEEETTHHHHHH---HHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEE
T ss_pred CCCCcEEEEE--eCCCCCCccEEEeccHHHHHHH---HHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEE
Confidence 3556665443 27777776644 444332222 222223478899998888877654333 46888999999887
Q ss_pred CC-CCCChhhHHHHHhccCceEEEEcchhhhhhhccccc--ccccceEEEEeCCCc
Q 005867 131 LY-DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR--SAQRLRVMVCFTSLT 183 (673)
Q Consensus 131 l~-~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~ 183 (673)
.+ ....++.+...+++.++.++++.......+...... ..+.++.++.-+...
T Consensus 298 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~l~~lr~i~~gGe~l 353 (580)
T 3etc_A 298 YDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNFSTLKYAVVAGEPL 353 (580)
T ss_dssp EECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---CCTTCCEEEECSSCC
T ss_pred ecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcccccCCCccceEEEEccCCC
Confidence 75 567888999999999999999998877766543221 224566666655543
No 66
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=57.12 E-value=58 Score=35.88 Aligned_cols=99 Identities=17% Similarity=0.196 Sum_probs=74.2
Q ss_pred CCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhc-cccCCCCCCcEEEEecchHhHHHHHHhHHHhhcCcEEEE
Q 005867 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGY 296 (673)
Q Consensus 218 ~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~-~~~~~~~~~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v~ 296 (673)
.++.+|++.... .+| ....+|.+.+...+..+...|. .. ++.++|++..++|..-- ....++.++..|+..+.
T Consensus 95 ~pd~~Al~~~~~-~~~--~~~~~TY~eL~~~v~~lA~~L~~~~--Gv~~Gd~V~i~~~~~~e-~v~a~lA~~~~Gav~vp 168 (663)
T 1ry2_A 95 TPNKKAIIFEGD-EPG--QGYSITYKELLEEVCQVAQVLTYSM--GVRKGDTVAVYMPMVPE-AIITLLAISRIGAIHSV 168 (663)
T ss_dssp CTTSEEEEEECS-STT--CCEEEEHHHHHHHHHHHHHHHHHTS--CCCTTCEEEECCCSSHH-HHHHHHHHHHTTCEEEE
T ss_pred CCCceEEEEEcC-CCC--ceEEEEHHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEcCCCHH-HHHHHHHHHHcCCEEEe
Confidence 467777765432 122 2357999999999888887774 33 78899999999987642 24456778889999887
Q ss_pred ecC--CHHHHHHHhhhccCeEEEcchHH
Q 005867 297 YHG--DLNALRDDLMELKPTLLAGVPRV 322 (673)
Q Consensus 297 ~~~--~~~~~~~~i~~~~~t~l~~~P~~ 322 (673)
+.. .+..+...+++.++.++++....
T Consensus 169 l~~~~~~~~l~~~l~~~~~~~li~~~~~ 196 (663)
T 1ry2_A 169 VFAGFSSNSLRDRINDGDSKVVITTDES 196 (663)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEEESBC
T ss_pred eCCCCCHHHHHHHHHhcCCeEEEEcccc
Confidence 766 88999999999999999986643
No 67
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=56.92 E-value=58 Score=34.30 Aligned_cols=98 Identities=15% Similarity=0.048 Sum_probs=71.2
Q ss_pred CCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHHHhHHHhhcCcEEEEe
Q 005867 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (673)
Q Consensus 218 ~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v~~ 297 (673)
.|+.++++.. . .+..+|.+.+...+..+...+... ++.++|++...++-+.- .+...+.++..|+..+.+
T Consensus 15 ~p~~~a~~~~---~----~~~~~Ty~el~~~~~~~A~~L~~~--Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl 84 (504)
T 1t5h_X 15 APDHCALAVP---A----RGLRLTHAELRARVEAVAARLHAD--GLRPQQRVAVVAPNSAD-VVIAILALHRLGAVPALL 84 (504)
T ss_dssp CTTSEEEEET---T----TTEEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSCHH-HHHHHHHHHHHTCEEEEE
T ss_pred CCCceEEEEc---C----CCceeEHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCCHH-HHHHHHHHHHhCcEEEec
Confidence 4566676542 1 125789999999888887777543 68899999888886532 234567778899998888
Q ss_pred cC--CHHHHHHHhhhccCeEEEc--chHHHHH
Q 005867 298 HG--DLNALRDDLMELKPTLLAG--VPRVFEK 325 (673)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~--~P~~~~~ 325 (673)
+. ....+...+++.+++.++. .+.....
T Consensus 85 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~ 116 (504)
T 1t5h_X 85 NPRLKSAELAELIKRGEMTAAVIAVGRQVADA 116 (504)
T ss_dssp CTTSCHHHHHHHHHHTTCSEEEECC--CHHHH
T ss_pred CCccChHHHHHHHhhcCCcEEEEecchhhhhh
Confidence 76 7889999999999999887 5554443
No 68
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=55.87 E-value=63 Score=34.09 Aligned_cols=103 Identities=10% Similarity=-0.095 Sum_probs=72.7
Q ss_pred CCCCCceeeeecccCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHh--HHHHHHHHHhcCCeEee
Q 005867 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ--WVEAMEACNALSLICVP 130 (673)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e--~~~~~lA~~~~G~~~vp 130 (673)
.|+.+|++.. +.|.+|..+ .+|...+...+..+...+ ++.++|++...+|..-. ++..+++.+..|+.++.
T Consensus 153 ~~~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~ 227 (505)
T 3nyq_A 153 DDGDPALVVY--TSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRH 227 (505)
T ss_dssp CTTSEEEEEE--ECCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEe--CCCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEE
Confidence 4566665543 267666654 678998888777666544 78889998887775432 23347888899999887
Q ss_pred CCCCCChhhHHHHHhccCceEEEEcchhhhhhhc
Q 005867 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS 164 (673)
Q Consensus 131 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 164 (673)
.. ...++.+...+ +.++.+++........+..
T Consensus 228 ~~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 228 LG-RFSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp CS-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred CC-CCChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 74 45677777777 6799999988877665543
No 69
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=54.81 E-value=80 Score=32.76 Aligned_cols=106 Identities=12% Similarity=-0.005 Sum_probs=76.2
Q ss_pred CCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHHHhHHHhhcCcEEEEe
Q 005867 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (673)
Q Consensus 218 ~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v~~ 297 (673)
.|+.+|++.........-....+|.+.+...+..+...+... +. ++|++...++-+.- .+...+.++..|+..+.+
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~--g~-~gd~V~i~~~n~~e-~~~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRC--GS-TGDRVVISAPQGLE-YVVAFLGALQAGRIAVPL 112 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTS--SC-TTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhc--CC-CCCEEEEEcCCcHH-HHHHHHHHHHhCcEEEee
Confidence 467788776543211112346899999999999988887544 44 78998888776532 234567778899998877
Q ss_pred cC-----CHHHHHHHhhhccCeEEEcchHHHHHHH
Q 005867 298 HG-----DLNALRDDLMELKPTLLAGVPRVFEKIH 327 (673)
Q Consensus 298 ~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~ 327 (673)
.. ....+...+++.++..++..+.....+.
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~ 147 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVV 147 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHH
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHH
Confidence 53 4678888999999999999887766554
No 70
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=54.80 E-value=45 Score=35.40 Aligned_cols=97 Identities=7% Similarity=-0.130 Sum_probs=73.3
Q ss_pred CCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHHHhHHHhhcCcEEEEe
Q 005867 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (673)
Q Consensus 218 ~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v~~ 297 (673)
.++.+|++.. +..+|.+.+...+..+...+... ++.++|++...++-+.- .+...+.++..|+..+.+
T Consensus 36 ~p~~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~~--Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~vpl 103 (529)
T 2v7b_A 36 RAGKTAYIDD---------TGSTTYGELEERARRFASALRTL--GVHPEERILLVMLDTVA-LPVAFLGALYAGVVPVVA 103 (529)
T ss_dssp GTTSEEEECS---------SCEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSTH-HHHHHHHHHHHTCEEEEC
T ss_pred cCCceEEEeC---------CCCccHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCcHH-HHHHHHHHHHcCceEEec
Confidence 4566666532 14689999998888887776433 67899999888886543 234567778889998887
Q ss_pred cC--CHHHHHHHhhhccCeEEEcchHHHHHH
Q 005867 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKI 326 (673)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l 326 (673)
+. .+..+...+++.++..++..+.....+
T Consensus 104 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 134 (529)
T 2v7b_A 104 NTLLTPADYVYMLTHSHARAVIASGALVQNV 134 (529)
T ss_dssp CTTCCHHHHHHHHHHHTCSEEEEEGGGHHHH
T ss_pred CcccCHHHHHHHHhccCCeEEEechhhhhHH
Confidence 76 889999999999999999988766554
No 71
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=54.43 E-value=66 Score=34.50 Aligned_cols=95 Identities=8% Similarity=-0.016 Sum_probs=71.4
Q ss_pred CCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHHHhHHHhhcCcEEEEe
Q 005867 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (673)
Q Consensus 218 ~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v~~ 297 (673)
.|+.+|++. . .-.+|.+.+...+..+...+... ++.++|++...++-+.- .+...+.++..|+..+.+
T Consensus 52 ~p~~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl 119 (563)
T 1amu_A 52 RPNNVAIVC-E--------NEQLTYHELNVKANQLARIFIEK--GIGKDTLVGIMMEKSID-LFIGILAVLKAGGAYVPI 119 (563)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEe-C--------CceecHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEEe
Confidence 456677653 1 24689999988888877766443 68899999888876532 234567778899998888
Q ss_pred cC--CHHHHHHHhhhccCeEEEcchHHHH
Q 005867 298 HG--DLNALRDDLMELKPTLLAGVPRVFE 324 (673)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~P~~~~ 324 (673)
+. ....+...+++.++.+++..+....
T Consensus 120 ~~~~~~~~l~~il~~~~~~~li~~~~~~~ 148 (563)
T 1amu_A 120 DIEYPKERIQYILDDSQARMLLTQKHLVH 148 (563)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHH
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEcCchhh
Confidence 76 8889999999999999998876543
No 72
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=54.09 E-value=44 Score=35.26 Aligned_cols=86 Identities=14% Similarity=0.038 Sum_probs=67.9
Q ss_pred eeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHHHhHHHhhcCcEEEEecC--CHHHHHHHhhhccCeE
Q 005867 238 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTL 315 (673)
Q Consensus 238 v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~ 315 (673)
-.+|.+.+...+..+...+... ++.++|++...++-+. -.+...+.++..|+..+.++. ....+...+++.++.+
T Consensus 27 ~~~Ty~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~ 103 (503)
T 4fuq_A 27 DKISYAELVARAGRVANVLVAR--GLQVGDRVAAQTEKSV-EALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKI 103 (503)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSCH-HHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSE
T ss_pred cEEEHHHHHHHHHHHHHHHHHc--CCCCCCEEEEECCCCH-HHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcE
Confidence 3589999999888888777543 7889999988887663 224456777899999888876 8899999999999999
Q ss_pred EEcchHHHHHH
Q 005867 316 LAGVPRVFEKI 326 (673)
Q Consensus 316 l~~~P~~~~~l 326 (673)
++..+.....+
T Consensus 104 vi~~~~~~~~~ 114 (503)
T 4fuq_A 104 VVCDPSKRDGI 114 (503)
T ss_dssp EEECGGGTTTT
T ss_pred EEECchhhHHH
Confidence 99987655443
No 73
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=49.26 E-value=39 Score=40.73 Aligned_cols=123 Identities=9% Similarity=-0.038 Sum_probs=85.1
Q ss_pred CCCCCceeeeecccCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHH-HHHHHHhcCCeEeeC
Q 005867 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE-AMEACNALSLICVPL 131 (673)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~-~~lA~~~~G~~~vpl 131 (673)
.|+.+|++.. +.|.+|..+ .+|.+.+... .......++.++|+++...+-+.+..+ -+++.+..|+.++..
T Consensus 605 ~~~~~ayiiy--TSGSTG~PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~ 678 (1304)
T 2vsq_A 605 DPNDPAYIMY--TSGTTGKPKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIA 678 (1304)
T ss_dssp CTTSEEEEEE--ECCSSSSCEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEe--CCCCCCCCCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEEC
Confidence 4677766544 367777655 6788776532 111223478899999988888766544 477888899998887
Q ss_pred CC--CCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCc
Q 005867 132 YD--TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLT 183 (673)
Q Consensus 132 ~~--~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 183 (673)
++ ..+++.+...+.+.++.++.........+..........++.+++-+...
T Consensus 679 ~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe~l 732 (1304)
T 2vsq_A 679 DEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGERA 732 (1304)
T ss_dssp CGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHHHHTCSEEEEESSCC
T ss_pred ChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhcCCCccEEEEecCCC
Confidence 65 35678999999999999999988877766443223345567777666543
No 74
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=47.38 E-value=1.3e+02 Score=27.62 Aligned_cols=53 Identities=6% Similarity=-0.160 Sum_probs=36.5
Q ss_pred CcEEEEecch-HhHHHHHHh-HHHhhcCcEEEEecC--CHHHHHHHhhhccCeEEEc
Q 005867 266 DDVYLSFLPL-AHILDRVIE-EYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAG 318 (673)
Q Consensus 266 ~d~~l~~~p~-~~~~gl~~~-~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~ 318 (673)
+.+++...+- .|..|.... ...-..|..++.... +++.+.+.+.+++++.+..
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l 149 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLL 149 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEE
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEE
Confidence 3444444443 366776554 344567888877665 8999999999999997666
No 75
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=47.26 E-value=65 Score=31.94 Aligned_cols=66 Identities=8% Similarity=-0.020 Sum_probs=47.4
Q ss_pred HHHHcC-CCCCCEEEEEcCCcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcch
Q 005867 92 ALRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (673)
Q Consensus 92 ~L~~~g-v~~gd~V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (673)
.+.+.| +++|+.|.+....+=.-..+.++|..+|..++.+-|...+..-...++..++++++++..
T Consensus 61 ~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 61 KAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 344555 488888655555566666667777788998877766655566677889999999999764
No 76
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=46.20 E-value=1e+02 Score=32.80 Aligned_cols=114 Identities=6% Similarity=-0.172 Sum_probs=76.1
Q ss_pred cCCCCCce--eeeHHHHHHHHHHHHHHHH-----HcCCCCCCEEEEEcCCcHhHH-HHHHHHHhcCCeEeeCCCCCChhh
Q 005867 68 DGKFGPYV--WKTYKEVYEEVLQIVSALR-----ASGAEPGCRVGIYGANCPQWV-EAMEACNALSLICVPLYDTLGPGA 139 (673)
Q Consensus 68 d~~~~~~~--~~Ty~el~~~v~~lA~~L~-----~~gv~~gd~V~i~~~~~~e~~-~~~lA~~~~G~~~vpl~~~~~~~~ 139 (673)
.|.+|..+ .+|...+...+..++..+. ...+..++++....+.+.+.. ..++..+..|+..+........+.
T Consensus 184 SGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~ 263 (562)
T 3ite_A 184 SGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDD 263 (562)
T ss_dssp CC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHS
T ss_pred CCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHH
Confidence 67666654 6789999888887777654 235677888887777665443 346777888988877654444567
Q ss_pred HHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCC
Q 005867 140 VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182 (673)
Q Consensus 140 l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 182 (673)
+...+++.++.++............ .....+.++.++.-...
T Consensus 264 ~~~~i~~~~~t~~~~~P~~l~~~~~-~~~~~~~lr~~~~gG~~ 305 (562)
T 3ite_A 264 LPRTFRELGVTHAGIVPSLLDQTGL-VPEDAPHLVYLGVGGEK 305 (562)
T ss_dssp HHHHHHHTTCCEEEECHHHHHHHTC-CGGGSTTCCEEEEESSC
T ss_pred HHHHHHHcCCCEEEcCHHHHhhccc-CccccCceEEEEEecCC
Confidence 8889999999999998876655422 22334556666665544
No 77
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=43.33 E-value=77 Score=36.71 Aligned_cols=99 Identities=16% Similarity=0.116 Sum_probs=75.1
Q ss_pred CCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHHHhHHHhhcCcEEEEe
Q 005867 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (673)
Q Consensus 218 ~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v~~ 297 (673)
.|+.+|++... +| -.+|.+.+...+..+...+... ++.++|++...++-+. -.+...+.++..|+..+.+
T Consensus 74 ~pd~~Al~~~~---~~----~~~TY~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~ns~-e~~v~~lA~~~~Ga~~vpl 143 (979)
T 3tsy_A 74 FATKPCLINGP---TG----HVYTYSDVHVISRQIAANFHKL--GVNQNDVVMLLLPNCP-EFVLSFLAASFRGATATAA 143 (979)
T ss_dssp TTTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECSSCH-HHHHHHHHHHHHTCEEEEE
T ss_pred CCCCeEEEECC---CC----cEEEHHHHHHHHHHHHHHHHHc--CCCCcCEEEEEeCCCH-HHHHHHHHHHHcCCEEEee
Confidence 46777766422 22 4689999998888888777543 7889999998888663 2244567778999998888
Q ss_pred cC--CHHHHHHHhhhccCeEEEcchHHHHHH
Q 005867 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKI 326 (673)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l 326 (673)
+. .+..+...+++.++.+++..+.....+
T Consensus 144 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 174 (979)
T 3tsy_A 144 NPFFTPAEIAKQAKASNTKLIITEARYVDKI 174 (979)
T ss_dssp CTTSCHHHHHHHHHHHTEEEEEECSTTTTTS
T ss_pred CCCCCHHHHHHHHHHcCCeEEEEChHHHHHH
Confidence 76 889999999999999999887665443
No 78
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=38.73 E-value=1.1e+02 Score=32.32 Aligned_cols=81 Identities=11% Similarity=0.015 Sum_probs=62.3
Q ss_pred eeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHHHhHHHhhcCcEEEEecC--CHHHHHHHhhhccCeE
Q 005867 238 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTL 315 (673)
Q Consensus 238 v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~ 315 (673)
-.+|.+.+...+..+...+... ++.++|++...++-+. -.+...+.++..|+..+.+.. ....+...++..++++
T Consensus 28 ~~~Ty~el~~~~~~lA~~L~~~--g~~~gd~V~i~~~n~~-~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ 104 (521)
T 3l8c_A 28 ERRTYGQLKRDSDSIAAFIDSL--ALLAKSPVLVFGAQTY-DMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSL 104 (521)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHT--CCCTTCCEEEEECSSH-HHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSE
T ss_pred CeecHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEeCCCH-HHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCE
Confidence 3589999988888887776443 6788998888777653 223456677889999887766 8899999999999999
Q ss_pred EEcchH
Q 005867 316 LAGVPR 321 (673)
Q Consensus 316 l~~~P~ 321 (673)
++....
T Consensus 105 ii~~~~ 110 (521)
T 3l8c_A 105 IIAIEE 110 (521)
T ss_dssp EEESSC
T ss_pred EEecCc
Confidence 987654
No 79
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=35.62 E-value=1.4e+02 Score=29.49 Aligned_cols=78 Identities=17% Similarity=0.069 Sum_probs=53.3
Q ss_pred eeeHHHHHHHHHHHHH---HHHHcCCCCCCEEEEEcCCcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEE
Q 005867 76 WKTYKEVYEEVLQIVS---ALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFV 152 (673)
Q Consensus 76 ~~Ty~el~~~v~~lA~---~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 152 (673)
.+++.+.......... .|...++++|++|+|+..-+.-..++++|....|+.++.++.. ++. ..++...++..+
T Consensus 136 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r-~~~~~~~Ga~~~ 212 (348)
T 4eez_A 136 GLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDK-LNLAKKIGADVT 212 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHH-HHHHHHTTCSEE
T ss_pred CCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHH-hhhhhhcCCeEE
Confidence 3677776554443332 3445589999999999987787888888887778877766553 333 456677888877
Q ss_pred EEcc
Q 005867 153 FVQD 156 (673)
Q Consensus 153 i~~~ 156 (673)
+-..
T Consensus 213 i~~~ 216 (348)
T 4eez_A 213 INSG 216 (348)
T ss_dssp EEC-
T ss_pred EeCC
Confidence 6543
No 80
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=34.40 E-value=1.4e+02 Score=29.54 Aligned_cols=65 Identities=6% Similarity=-0.041 Sum_probs=50.4
Q ss_pred HHHcC-CCCCCEEEEEcCCcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcch
Q 005867 93 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (673)
Q Consensus 93 L~~~g-v~~gd~V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (673)
+.+.| +++|.+..+....+=.-..+-++|.++|..+..+-|...+..-...++..++++++++..
T Consensus 77 a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 77 AEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 33444 677876666777777777778888899999888877777777788999999999998653
No 81
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=34.39 E-value=1.2e+02 Score=28.85 Aligned_cols=62 Identities=15% Similarity=0.161 Sum_probs=48.6
Q ss_pred HHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHH
Q 005867 47 IFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV 115 (673)
Q Consensus 47 ~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~ 115 (673)
+++...+..|+...+.+. |...-++-..|..++.+++.+.+..|.+.|++ ..++.-|+...+
T Consensus 20 v~~~i~~~lP~~~~iy~~---D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~~----~IVIACNTa~~~ 81 (269)
T 3ist_A 20 VVREVLKQLPHEQVYYLG---DTARCPYGPRDKEEVAKFTWEMTNFLVDRGIK----MLVIACNTATAA 81 (269)
T ss_dssp HHHHHHHHCTTCCEEEEE---CGGGCCCTTSCHHHHHHHHHHHHHHHHHTTCS----EEEECCHHHHHH
T ss_pred HHHHHHHHCCCCcEEEEe---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC----EEEEeCCCccHH
Confidence 556666789999888887 87777778899999999999999999988763 555555565543
No 82
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=30.20 E-value=1.9e+02 Score=30.62 Aligned_cols=86 Identities=9% Similarity=-0.127 Sum_probs=66.9
Q ss_pred eeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHHHhHHHhhcCcEEEEecC--C-------HHHHHHHh
Q 005867 238 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--D-------LNALRDDL 308 (673)
Q Consensus 238 v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v~~~~--~-------~~~~~~~i 308 (673)
-.+|.+.+...+..+...+... ++.++|++...++-+.- .+...+.++..|+..+.++. . ...+...+
T Consensus 48 ~~~Ty~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l 124 (576)
T 3gqw_A 48 DQLEYQTLKARAEAGAKRLLSL--NLKKGDRVALIAETSSE-FVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLL 124 (576)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHT--CCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHH
T ss_pred eEEcHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCcHH-HHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHH
Confidence 5789999999988888777543 68899999988886542 24456777899999888764 3 57888899
Q ss_pred hhccCeEEEcchHHHHHH
Q 005867 309 MELKPTLLAGVPRVFEKI 326 (673)
Q Consensus 309 ~~~~~t~l~~~P~~~~~l 326 (673)
+..++..++........+
T Consensus 125 ~~~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 125 ASCQPAAIITGDEWLPLV 142 (576)
T ss_dssp HHHCCSEEEECGGGHHHH
T ss_pred HhcCCCEEEecHHHHHHH
Confidence 999999999888765544
No 83
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=25.03 E-value=2.5e+02 Score=27.29 Aligned_cols=65 Identities=15% Similarity=0.053 Sum_probs=43.2
Q ss_pred HHHcC-CCCCCEEEEEcCCcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcch
Q 005867 93 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (673)
Q Consensus 93 L~~~g-v~~gd~V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (673)
+.+.| +++|...++....+=.-..+.+++.+.|..++.+-|...+..-...++..++++++++..
T Consensus 57 a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 57 AEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 34555 456643333444555555566677789998877666545555667888999999998753
No 84
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=25.02 E-value=2.4e+02 Score=28.97 Aligned_cols=63 Identities=10% Similarity=0.018 Sum_probs=45.6
Q ss_pred HHcC-CCCCCEEEEEcCCcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcc
Q 005867 94 RASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (673)
Q Consensus 94 ~~~g-v~~gd~V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~ 156 (673)
.+.| +++|...++....+=.-..+.+++.+.|..++.+-|...+..-...++..++++++++.
T Consensus 166 ~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 166 EQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 4556 46775555555556666666777888899888776666666677788999999999974
No 85
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=24.90 E-value=2.7e+02 Score=26.89 Aligned_cols=64 Identities=11% Similarity=0.118 Sum_probs=42.5
Q ss_pred HHHcC-CCCCCEEEEEcCCcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcch
Q 005867 93 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (673)
Q Consensus 93 L~~~g-v~~gd~V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (673)
+.+.| +++|+.|+. ...+=.-..+.++|...|..++.+-|...+..-...++..+++++++...
T Consensus 58 a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 58 AEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp HHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 44455 366776655 44444444455666788988877666544555667788999999998863
No 86
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=24.57 E-value=1.8e+02 Score=28.11 Aligned_cols=73 Identities=5% Similarity=-0.029 Sum_probs=49.1
Q ss_pred eeeHHHHHHHHHHHHHH---HHHcCCCCCCEEEEEcCCcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEE
Q 005867 76 WKTYKEVYEEVLQIVSA---LRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFV 152 (673)
Q Consensus 76 ~~Ty~el~~~v~~lA~~---L~~~gv~~gd~V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 152 (673)
.+++.+.......++.. |...++++|++|+|...-++-.+++++|- ..|+.++.+. +++.+ .++++.++..+
T Consensus 115 ~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qlak-~~Ga~Vi~~~---~~~~~-~~~~~lGa~~v 189 (315)
T 3goh_A 115 NLSFERAAALPCPLLTAWQAFEKIPLTKQREVLIVGFGAVNNLLTQMLN-NAGYVVDLVS---ASLSQ-ALAAKRGVRHL 189 (315)
T ss_dssp TSCHHHHHTSHHHHHHHHHHHTTSCCCSCCEEEEECCSHHHHHHHHHHH-HHTCEEEEEC---SSCCH-HHHHHHTEEEE
T ss_pred CCCHHHHhhCccHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCEEEEEE---ChhhH-HHHHHcCCCEE
Confidence 46888775444443333 33348899999999999557777777776 4588777665 23333 34566888888
Q ss_pred E
Q 005867 153 F 153 (673)
Q Consensus 153 i 153 (673)
+
T Consensus 190 ~ 190 (315)
T 3goh_A 190 Y 190 (315)
T ss_dssp E
T ss_pred E
Confidence 7
No 87
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=23.64 E-value=2.9e+02 Score=26.63 Aligned_cols=64 Identities=11% Similarity=0.033 Sum_probs=42.3
Q ss_pred HHHcCC-CCCCEEEEEcCCcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcch
Q 005867 93 LRASGA-EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (673)
Q Consensus 93 L~~~gv-~~gd~V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (673)
+.+.|. ++|+.|+. ...+=.-..+.++|...|..++.+-|...+..-...++..+++++++...
T Consensus 56 a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 56 AEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 344453 66766655 44444445556667788988777655544455566788999999999764
No 88
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=23.43 E-value=3.4e+02 Score=25.58 Aligned_cols=61 Identities=15% Similarity=0.164 Sum_probs=44.7
Q ss_pred HHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHh
Q 005867 46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ 113 (673)
Q Consensus 46 ~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e 113 (673)
.+++...+..|+...+.+. |...-++-..++.++.+++...+..|.+.|+ | ..++.-|+.-
T Consensus 17 tv~~~i~~~lP~~~~iy~~---D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~---d-~iviaCNTas 77 (267)
T 2gzm_A 17 TVAKELIRQLPKERIIYLG---DTARCPYGPRSREEVRQFTWEMTEHLLDLNI---K-MLVIACNTAT 77 (267)
T ss_dssp HHHHHHHHHCTTSCEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHHTTTC---S-EEEECCHHHH
T ss_pred HHHHHHHHHCCCCCEEEec---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC---C-EEEEeCchhh
Confidence 3556666789998888776 7665566667899999999999999988776 2 4444444544
No 89
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=23.40 E-value=1.6e+02 Score=21.77 Aligned_cols=46 Identities=20% Similarity=0.153 Sum_probs=34.8
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHHHhcCCe
Q 005867 75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127 (673)
Q Consensus 75 ~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~~~~G~~ 127 (673)
..+.+.+|.+. +.+.++.+++.|.++|..+.....+...+...|..
T Consensus 22 ~~ip~~~l~~~-------~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~ 67 (85)
T 2jtq_A 22 INIPLKEVKER-------IATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYT 67 (85)
T ss_dssp EECCHHHHHHH-------HHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCS
T ss_pred EEcCHHHHHHH-------HHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCC
Confidence 56777776543 34446778899999999998888788888888864
No 90
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=22.65 E-value=1.3e+02 Score=28.73 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=21.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCc
Q 005867 87 LQIVSALRASGAEPGCRVGIYGANC 111 (673)
Q Consensus 87 ~~lA~~L~~~gv~~gd~V~i~~~~~ 111 (673)
..+...|+++|+++||.|.|.+.-+
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl~ 42 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSLS 42 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECTG
T ss_pred HHHHHHHHHcCCCCCCEEEEEechH
Confidence 4567789999999999999998854
No 91
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=22.29 E-value=2.8e+02 Score=27.33 Aligned_cols=64 Identities=9% Similarity=0.062 Sum_probs=42.3
Q ss_pred HHHcC-CCCCCEEEEEcCCcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcch
Q 005867 93 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (673)
Q Consensus 93 L~~~g-v~~gd~V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (673)
+.+.| +++|+.|+.... +=.-..+.+++...|..++.+-|...+..-...++..+++++++...
T Consensus 69 a~~~g~~~~g~~vv~aSs-GN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 69 AIKDGRLKPGMEIIESTS-GNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGK 133 (343)
T ss_dssp HHHHTSSCTTCEEEEECS-SHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 33445 467776666654 43444455666678987777666545555677888999999998763
No 92
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=21.91 E-value=2.1e+02 Score=27.27 Aligned_cols=62 Identities=11% Similarity=0.071 Sum_probs=47.1
Q ss_pred HHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHH
Q 005867 47 IFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV 115 (673)
Q Consensus 47 ~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~ 115 (673)
+++...+..|+.-.+.+. |...-++-.-+|.++.+++.+.+..|.+.|++ ..++.-|+.-.+
T Consensus 39 v~~~i~~~lP~e~~iy~~---D~a~~PYG~ks~e~i~~~~~~~~~~L~~~g~d----~IVIACNTa~~~ 100 (274)
T 3uhf_A 39 VLKSLYEARLFDEIIYYG---DTARVPYGVKDKDTIIKFCLEALDFFEQFQID----MLIIACNTASAY 100 (274)
T ss_dssp HHHHHHHTTCCSEEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHTTSCCS----EEEECCHHHHHH
T ss_pred HHHHHHHHCCCCCEEEEe---cCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC----EEEEeCCChhHH
Confidence 455556678998888887 87777777899999999999999999877763 555555565543
No 93
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=20.52 E-value=3.7e+02 Score=25.39 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=45.4
Q ss_pred HHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHh
Q 005867 46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQ 113 (673)
Q Consensus 46 ~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~-~gv~~gd~V~i~~~~~~e 113 (673)
.+++...+..|+...+.+. |...-++-..+..++.+++...+..|.+ .|++ ..++.-|+.-
T Consensus 17 tv~~~i~~~lP~~~~iy~~---D~~~~PyG~~s~~~i~~~~~~~~~~L~~~~g~d----~iViACNTas 78 (272)
T 1zuw_A 17 TVAKEIMRQLPKENIIYVG---DTKRCPYGPRPEEEVLQYTWELTNYLLENHHIK----MLVIACNTAT 78 (272)
T ss_dssp HHHHHHHHHSTTCCEEEEE---CGGGCCCSSSCHHHHHHHHHHHHHHHHHHSCCS----EEEECCHHHH
T ss_pred HHHHHHHHhCCCCcEEEec---cCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCC----EEEEeCchhh
Confidence 4567777889998888776 6655555568999999999999999998 7763 4444444544
No 94
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=20.44 E-value=2.4e+02 Score=27.71 Aligned_cols=61 Identities=8% Similarity=0.058 Sum_probs=38.4
Q ss_pred CCCCCCEEEEEcCCcH------hHHH-HHHHHHhcCCeEeeCCCCC------------ChhhHHHHHhccCceEEEEcch
Q 005867 97 GAEPGCRVGIYGANCP------QWVE-AMEACNALSLICVPLYDTL------------GPGAVNFILDHAEIDFVFVQDK 157 (673)
Q Consensus 97 gv~~gd~V~i~~~~~~------e~~~-~~lA~~~~G~~~vpl~~~~------------~~~~l~~~l~~~~~~~vi~~~~ 157 (673)
-+++||+|+|++|.+. +.+- +.--+-..|..++.-.... ..+++..++.+-.++.|++..-
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIG 87 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCC
Confidence 5799999999999852 1121 1222335687776543221 2346777788888888888653
No 95
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=20.33 E-value=3.4e+02 Score=25.88 Aligned_cols=68 Identities=15% Similarity=0.121 Sum_probs=47.6
Q ss_pred CCCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHh
Q 005867 38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ 113 (673)
Q Consensus 38 ~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e 113 (673)
++.+.++ .+++...+..|+...+.+. |...-++-..++.++.+++...+..|.+.|+ | ..++.-|+.-
T Consensus 29 DsG~Ggl-tv~~~i~~~~P~~~~iy~~---D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~---d-~IVIaCNTas 96 (286)
T 2jfq_A 29 DSGVGGL-TVAKEIMRQLPNETIYYLG---DIGRCPYGPRPGEQVKQYTVEIARKLMEFDI---K-MLVIACNTAT 96 (286)
T ss_dssp ESSSTTH-HHHHHHHHHCTTCCEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHTTSCC---S-EEEECCHHHH
T ss_pred eCCCCcH-HHHHHHHHHCCCccEEEec---cCCCCCcCCCCHHHHHHHHHHHHHHHHHCCC---C-EEEEeCCchh
Confidence 3444544 5577777789988888766 6655555568999999999999999987665 3 4444444544
No 96
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=20.15 E-value=2.1e+02 Score=28.24 Aligned_cols=77 Identities=16% Similarity=0.075 Sum_probs=48.3
Q ss_pred eeHHHHHHHHHHH---HHHHHHcCCC-CCCEEEEEcCCcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEE
Q 005867 77 KTYKEVYEEVLQI---VSALRASGAE-PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFV 152 (673)
Q Consensus 77 ~Ty~el~~~v~~l---A~~L~~~gv~-~gd~V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 152 (673)
+++.+........ -..|.+.+++ +|++|+|...-++-..++++|-. .|+.++.+... .+.+....+..++..+
T Consensus 153 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~-~Ga~Vi~~~~~--~~~~~~~~~~lGa~~v 229 (357)
T 2cf5_A 153 MAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAKA-MGHHVTVISSS--NKKREEALQDLGADDY 229 (357)
T ss_dssp CCHHHHTGGGTHHHHHHHHHHHTSTTSTTCEEEEECCSHHHHHHHHHHHH-HTCEEEEEESS--TTHHHHHHTTSCCSCE
T ss_pred CCHHHhhhhhhhHHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCC--hHHHHHHHHHcCCcee
Confidence 6666643222111 1234556888 99999999976677777777765 58876655543 4444455557888776
Q ss_pred EEcc
Q 005867 153 FVQD 156 (673)
Q Consensus 153 i~~~ 156 (673)
+...
T Consensus 230 i~~~ 233 (357)
T 2cf5_A 230 VIGS 233 (357)
T ss_dssp EETT
T ss_pred eccc
Confidence 6543
No 97
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=20.09 E-value=2.6e+02 Score=27.58 Aligned_cols=62 Identities=15% Similarity=0.095 Sum_probs=43.6
Q ss_pred HHHH--cCCCCCCEEEEEcCCcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcc
Q 005867 92 ALRA--SGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (673)
Q Consensus 92 ~L~~--~gv~~gd~V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~ 156 (673)
.|.+ .++++|++|+|...-++-..++++|-...|+.++.++.. ++.+ .+++..++..++...
T Consensus 176 al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~--~~~~-~~~~~lGa~~vi~~~ 239 (359)
T 1h2b_A 176 AVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVK--EEKL-KLAERLGADHVVDAR 239 (359)
T ss_dssp HHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESS--HHHH-HHHHHTTCSEEEETT
T ss_pred HHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC--HHHH-HHHHHhCCCEEEecc
Confidence 3455 689999999999996677777787775548876665542 4443 455678888877543
Done!