Query 005868
Match_columns 673
No_of_seqs 147 out of 1316
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 14:56:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005868.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005868hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2262 Sexual differentiation 100.0 3E-126 6E-131 1028.0 33.9 601 21-665 45-734 (761)
2 TIGR00727 ISP4_OPT small oligo 100.0 5E-120 1E-124 1028.8 46.4 584 31-658 19-678 (681)
3 TIGR00728 OPT_sfam oligopeptid 100.0 4E-101 8E-106 890.6 41.6 583 29-653 10-650 (654)
4 PF03169 OPT: OPT oligopeptide 100.0 2.2E-99 5E-104 874.3 50.2 584 35-654 1-623 (624)
5 TIGR00733 putative oligopeptid 100.0 2.3E-79 4.9E-84 691.6 46.7 554 35-655 1-590 (591)
6 COG1297 Predicted membrane pro 100.0 6.1E-62 1.3E-66 524.3 36.8 563 32-658 11-617 (624)
7 TIGR00733 putative oligopeptid 93.2 11 0.00024 43.9 21.5 149 495-652 88-266 (591)
8 PF03169 OPT: OPT oligopeptide 88.1 18 0.00039 42.6 17.3 27 594-620 217-243 (624)
9 PF11166 DUF2951: Protein of u 55.5 6.2 0.00013 34.1 1.2 44 15-58 48-92 (98)
10 TIGR02106 cyd_oper_ybgT cyd op 40.6 36 0.00079 23.2 2.8 18 40-57 5-22 (30)
11 PF08173 YbgT_YccB: Membrane b 39.3 40 0.00086 22.7 2.8 18 40-57 5-22 (28)
12 PF06609 TRI12: Fungal trichot 38.4 4.2E+02 0.0091 31.2 13.0 30 2-33 9-38 (599)
13 PRK14749 hypothetical protein; 38.2 43 0.00092 22.7 2.8 18 40-57 5-22 (30)
14 KOG2927 Membrane component of 30.1 1.2E+02 0.0027 32.7 6.2 30 381-410 182-212 (372)
15 COG4890 Predicted outer membra 29.0 75 0.0016 22.3 2.9 19 39-57 4-22 (37)
16 TIGR00728 OPT_sfam oligopeptid 23.3 1.3E+03 0.028 27.4 14.6 27 594-620 231-257 (654)
17 PF04657 DUF606: Protein of un 23.0 2.2E+02 0.0049 26.5 6.1 47 411-458 62-108 (138)
No 1
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-126 Score=1027.98 Aligned_cols=601 Identities=18% Similarity=0.257 Sum_probs=539.5
Q ss_pred hhhhccCCCCC-----------CCCcchHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHhhhc
Q 005868 21 EEEEADQPIPE-----------WKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSK 89 (673)
Q Consensus 21 ~~~~~~~~~~~-----------~~~~lT~Ra~~lG~~l~~l~a~~n~~~~lr~g~~~~~si~~~lls~~lg~~~~~~lp~ 89 (673)
+|||||+|+|| +.|++|||+|++|++.+++++++||+|++|+-...-..+.+|++.+|+||+|+|.||+
T Consensus 45 ~ed~~~spv~EVrl~Vp~tDDptlPv~TfRmW~Lg~~~~iv~a~vNqFF~~R~~~lsis~i~aQi~~~PlGklma~~lP~ 124 (761)
T KOG2262|consen 45 LEDEEDSPVPEVRLTVPPTDDPTLPVLTFRMWFLGLISCIVLAFVNQFFSYRYPPLSISAIVAQIATYPLGKLMAKTLPT 124 (761)
T ss_pred ccccccCcchhheeecCCCCCCCchhHhHHHHHHHHHHHHHHHHHhhhhcccCCCeehHHHHHHHHHHhHHHHHHHhCCc
Confidence 46777788764 7799999999999999999999999999998322224578999999999999999998
Q ss_pred c----------CCCCCCCCccchhhhhhhhhhccccccccchhhhHhHhhHHHHhhhcCCCCCCCCCCCCCCchhHHHHH
Q 005868 90 L----------GFSIKPFTRQENTVIQTCVVACYGLAFSGGFGSSLLAMDERTYQLIGADYPGNRAEDVKNPGLGWMIGF 159 (673)
Q Consensus 90 ~----------~lnpgpf~~kE~~iiq~~Asa~~~~~~~~~~~~~i~a~~~l~y~~~g~~~~~~~~~~~~~~~~~~~~~~ 159 (673)
+ ++||||||.|||++++++|+++++ ++|++.|+..+++||++ +.++++++++
T Consensus 125 ~~~~~~~~~~fslNPGPFn~KEHvlitIfan~~sg----~aYat~Ii~~~k~fY~~--------------~l~f~~~~ll 186 (761)
T KOG2262|consen 125 WKFGLGGRWSFSLNPGPFNVKEHVLITIFANIGSG----TAYATHIITAQKAFYKR--------------NLSFGYAFLL 186 (761)
T ss_pred eeeecCcceEEEeCCCCCcchheeeeehhhhccCc----chhhhHHHHHHHHHHhc--------------cccHHHHHHH
Confidence 3 489999999999999999999654 46899999999999997 4578899999
Q ss_pred HHHHHHhhhhhhhhcccceeecCcCcCcchhhHHHHHHhhccCCccccc-hhhHHHHHHHHHHHHHHHHH----------
Q 005868 160 VVVVSFLGLFSLVPLRKVMILDYKLTYPSGTATAMLINSFHTNTGAELA-GKQVRCLGKYLSISFFWSCF---------- 228 (673)
Q Consensus 160 ~l~~~llG~~~A~~lRr~lV~~~~l~~P~~la~a~l~~slh~~~~~~~~-~~r~~~f~~~f~~~fi~~~~---------- 228 (673)
++++|++|+++||++||++|+|++|.||+.|++++|+|+||++|+.+.+ ++|+|||+++|.++|+||||
T Consensus 187 ~lttQ~lGyGwAGl~Rk~lV~Pa~m~WPsnLvqvsLFraLHeke~~~~g~msR~rFF~ivfv~SFiyY~fPgylF~~Ls~ 266 (761)
T KOG2262|consen 187 VLTTQLLGYGWAGLFRKYLVYPASMWWPSNLVQVSLFRALHEKENKSKGNMSRYRFFLIVFVASFIYYWFPGYLFPILSS 266 (761)
T ss_pred HHHHHHhcccHhhhhHhhccCcHhhcCcchhHHHHHHHHHHhhhhhcccCccchhhhhHHHHHHHHHHHhhHHHHHHHhh
Confidence 9999999999999999999999999999999999999999997654433 78999999999999999997
Q ss_pred ----Hhhhcc-ccccccccccccccccccCcceeeeccc--ccccccccccHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 005868 229 ----KWFFSG-VGNSCGFDNFPSFGLTLFKNTFYFDFSP--TYVGCGLICPHIVNCSVLLGAIISWGFLWPFISQHAGDW 301 (673)
Q Consensus 229 ----~wi~p~-~~~~~~~~~~~glGl~~~~~~~t~Dws~--~~~G~gll~p~~~~~~~~~G~vl~~~il~P~l~~~~n~~ 301 (673)
||+.|. ...++++++..|+|+.| +||||++ +|+|+|+.+|+++.+|+++|.++..+|+.|++|| +|.|
T Consensus 267 ~swvcW~~P~s~~~~qi~sg~~GLGi~~----~tlDW~~IssylgSPLasP~~a~~n~~~gfvl~~~IV~Pi~Y~-~n~~ 341 (761)
T KOG2262|consen 267 FSWVCWIWPSSITANQIGSGLTGLGIGP----FTLDWSQISSYLGSPLASPFFAIANVFLGFVLFIYIVLPILYW-TNTY 341 (761)
T ss_pred hheeeEeccccHHHHHhccccccccccc----ccccHHHHHHHcCCcchhhHHHHHHHhhhhhhhhhhhhhhHhh-ccce
Confidence 788886 45677889999999998 9999999 4899999999999999999999999999999998 6999
Q ss_pred CCCCCCCCCccccc---------------------hhh----hhHHHH--HHHhhHHHHHHHHHHHHH----HHHHHHhh
Q 005868 302 YPADLGSNDFKGLY---------------------GYK----VFIAIS--LILGDGLYNLIKIITITV----KEMWNRST 350 (673)
Q Consensus 302 ~~~~~p~~s~~~~~---------------------~~~----~~~~~~--~~~~~g~~~l~~~i~~~~----~~~~~~~~ 350 (673)
+++++|+.|++.|| +|+ +|+++. +.++.++..+++.+.|.+ |++|++.|
T Consensus 342 ~a~~fPI~Ss~lf~~tG~sYnvt~Il~~~f~ld~~~Y~~ysp~yls~~falsygl~faa~~a~i~Hv~Lf~gkdiw~~~~ 421 (761)
T KOG2262|consen 342 DAKYFPIFSSSLFDHTGNSYNVTKILDSKFELDLDKYQEYSPLYLSTFFALSYGLGFAALSATIVHVALFNGKDIWQQTK 421 (761)
T ss_pred ecceeceecCcceecCCcEeceeeeecCccccchHHHhhcCCcceeHHHHHHHHHHHHHHHHHhhhheeeccHHHHHHHH
Confidence 99999998876554 343 677775 445556888888888864 78888877
Q ss_pred cCCCCCCcccccchhhhhhhhhhhhhhhhhccCCCchHHHHHHHHHHHHHHHhhcccccC--CchHHHHHHHHHHHHHHH
Q 005868 351 KDSKLPFVNDIQDTETSKLLLEQKEREIVFLKDGIPTWFAASGYVGLAAISTATIPTIFP--PLKWYLVLCSYLIAPALA 428 (673)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~d~~~r~~~~~y~~vP~ww~~~~lvv~~~~~~~~~~~~~~--~lp~w~~llai~l~~i~~ 428 (673)
+.. ++.+|.|++.|++|||||+|||.+.+++++++++++++++.+ |+|||++++|+++++++.
T Consensus 422 ~~~---------------~k~~DiHtrlMkkYKeVP~WWf~~ili~s~~l~~~~~~~~~~~~q~PwWg~~va~~ia~vf~ 486 (761)
T KOG2262|consen 422 KAF---------------NKKMDIHTRLMKKYKEVPDWWFLAILIVSLGLGLAACEGYKTQVQLPWWGLLVACAIAFVFT 486 (761)
T ss_pred hcc---------------ccCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHhhheeeecccccCchHHHHHHHHHHHHHh
Confidence 664 344566777799999999999999999999999999999988 899999999999999999
Q ss_pred HhhhhhhhccccccccchhhHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchHHHHHHHHH
Q 005868 429 FCNSYGTGLTDWNLASTYGKIGLFIIASLV-GTDGGVIAGLAACGVMMSIVSTAADLMQDFKTGYLTLSSAKSMFVSQLL 507 (673)
Q Consensus 429 ~~~~~~~g~T~~~~~~~l~~l~qli~g~~~-G~p~~~~anl~~~~~~~~~~~qa~~~~~DlK~G~y~~~pPr~~f~~Q~i 507 (673)
+|.+.+.|+||++|+ +|+++|+|.||+. ||| +|||.||.|++.++.||..++||+|+|||||+|||.||.+|++
T Consensus 487 iPigii~AtTNq~~G--LNiitE~i~Gy~~PgrP---iAn~~FK~yGyism~Qal~f~~DlKlghYMKIPPR~mF~~Q~v 561 (761)
T KOG2262|consen 487 IPIGIIQATTNQTPG--LNIITEYIIGYIYPGRP---IANLCFKTYGYISMTQALTFLQDLKLGHYMKIPPRSMFAVQLV 561 (761)
T ss_pred ccHHHhhhhccCCcc--HHHHHHHHHHhhcCCch---HHHHHHHHhchhhHHHHHHHHhhccceeeecCChHHHHHHHHH
Confidence 999999999999999 9999999999999 999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHhhcccCCC--CCCCCCCchHHHHHHHHHH-hhcCCCCCchh---hHHHHHHHHHHHH---HHH
Q 005868 508 GTAMGCVIAPLT-FWMYWTAFDIGS--PDGPYKAPYAVIFREMAIL-GIEGFSELPKH---CLALCCGFFVAAL---VIN 577 (673)
Q Consensus 508 G~ivg~~v~~~v-~~ll~~~~~i~~--p~~~~~~P~a~~~~~~s~~-g~~G~~~l~~~---y~~l~~~~~igai---i~~ 577 (673)
||+++++|+.+| .|++.+++++|+ |++.||||..++++++|++ |++||+|+|++ |..+.|+|++|++ ++|
T Consensus 562 ~tivs~~Vn~gv~~W~m~~I~~iC~~~~~s~~TCP~~rvffnASvIWGlIGP~riF~~~g~Y~~l~wFFLiGa~~pv~vw 641 (761)
T KOG2262|consen 562 GTIVAGFVNLGVAWWLMYSIPNICTTDQNSPWTCPSDRVFFNASVIWGLIGPKRIFGSLGIYPGLNWFFLIGALAPVLVW 641 (761)
T ss_pred HHHhheeeeHHhHHHHHhcccccccCCCCCCccCCCCceEEeceeeeecccchhhcCCCCccCcchHHHHHHHHhhHHHH
Confidence 999999999999 899999999997 4689999999999999999 99999999963 9999999999998 689
Q ss_pred HHHhhcCcc-cccccccccccccccccchhhHHHHHHHHHHH----HHHHHhccccccchhhhhhhhHHhhhHhHHHHHH
Q 005868 578 LLRDATPTK-ISRFIPVPMAMAVPFYIGAYFAIDMFVGTVIL----FIWELVNRKDSEDYAGAVASGLICGDGIWTIPSA 652 (673)
Q Consensus 578 ll~~~~p~~-~~~~i~~pv~~~~~~~lp~~~~~~~~~G~~i~----~~~~r~~~~~~~~y~~~laaGL~aG~ai~gvi~a 652 (673)
+++|++|++ |.+.+|.|+.++....+||++..++..|.+++ ++++||++.||+||||+++||||||.++++++++
T Consensus 642 ~~~k~fPk~~w~~~i~~pvl~gg~~~mPpat~vny~sw~iv~fifny~i~r~~~~WW~kYNyvLsaaldaG~a~~~vlif 721 (761)
T KOG2262|consen 642 LLQKKFPKKKWIKQINPPVLFGGTANMPPATAVNYTSWAIVGFIFNYYIFRYRRSWWQKYNYVLSAALDAGVAFMGVLIF 721 (761)
T ss_pred HHHHhcchhhhhhccCcceEecccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcccchhHHHhHhh
Confidence 999999976 57779999999999999998766666555554 6689999999999999999999999999999999
Q ss_pred H-HHHcCCCCCcce
Q 005868 653 I-LSIFRVNPPVCM 665 (673)
Q Consensus 653 ~-l~~~gv~~~~~~ 665 (673)
+ ++..|++.+ ||
T Consensus 722 fcv~~~~~~~~-WW 734 (761)
T KOG2262|consen 722 FCVQYPGISLN-WW 734 (761)
T ss_pred heeccCCCccc-cc
Confidence 7 888888775 44
No 2
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=100.00 E-value=4.5e-120 Score=1028.77 Aligned_cols=584 Identities=16% Similarity=0.230 Sum_probs=523.8
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHhhhcc---------CCCCCCCCccc
Q 005868 31 EWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKL---------GFSIKPFTRQE 101 (673)
Q Consensus 31 ~~~~~lT~Ra~~lG~~l~~l~a~~n~~~~lr~g~~~~~si~~~lls~~lg~~~~~~lp~~---------~lnpgpf~~kE 101 (673)
|++|++|+|+|++|++++++++++|++|++|++..+..++++||++||+||+|+|+||++ .+||||||+||
T Consensus 19 p~~p~~TfRa~~lG~~l~~i~s~in~~f~lR~p~i~is~~~~qll~yp~Gk~~a~~lP~~~~~~~g~~~~lNPGPF~~KE 98 (681)
T TIGR00727 19 PTIPVNTIRAWFIGLIWSTVGSGFNMFFSHRVPSISLNTPIIQMLAYPCGKAWAKIIPDWTITIRGRKYNIIPGPFNVKE 98 (681)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHHHHHHHHHHHcCccccccccceeccCCCCCChhc
Confidence 478999999999999999999999999999999988889999999999999999999974 38999999999
Q ss_pred hhhhhhhhhhccccccccchhhhHhHhhHHHHhhhcCCCCCCCCCCCCCCchhHHHHHHHHHHHhhhhhhhhcccceeec
Q 005868 102 NTVIQTCVVACYGLAFSGGFGSSLLAMDERTYQLIGADYPGNRAEDVKNPGLGWMIGFVVVVSFLGLFSLVPLRKVMILD 181 (673)
Q Consensus 102 ~~iiq~~Asa~~~~~~~~~~~~~i~a~~~l~y~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~llG~~~A~~lRr~lV~~ 181 (673)
|+++|+||+++.+. +++.+++..|++||++ +.++++++++++++|++|+++|+++||++|+|
T Consensus 99 h~liti~a~~~~~~----~y~~~~i~~~~~fy~~--------------~~~~g~~il~~lstq~~G~g~Ag~lRr~lV~p 160 (681)
T TIGR00727 99 HMFITLMYAVSFGA----AYTTDIILAQKLFYKS--------------AFGFGYQFLLSLSTQFIGFGFAGILRRFVVYP 160 (681)
T ss_pred ceeeeeeeehhccH----HHHHHHHHHHHHHhCC--------------CCCHHHHHHHHHHHHHHHHHHHHHhhceEecc
Confidence 99999999997553 4778888889999986 35789999999999999999999999999999
Q ss_pred CcCcCcchhhHHHHHHhhccCCcccc--c-hhhHHHHHHHHHHHHHHHHH--------------Hhhhcc-ccccccccc
Q 005868 182 YKLTYPSGTATAMLINSFHTNTGAEL--A-GKQVRCLGKYLSISFFWSCF--------------KWFFSG-VGNSCGFDN 243 (673)
Q Consensus 182 ~~l~~P~~la~a~l~~slh~~~~~~~--~-~~r~~~f~~~f~~~fi~~~~--------------~wi~p~-~~~~~~~~~ 243 (673)
++|+||+++++++|+|+||++++++. + ++|+|+|+++|+++|+|+|+ ||++|+ ...++++++
T Consensus 161 ~~~iwPs~L~t~aL~~aLH~~~~~~~~gw~~sr~kfF~~~f~~sfvw~w~P~ylf~~Ls~f~w~cwi~P~n~~~~~i~g~ 240 (681)
T TIGR00727 161 ARALWPTNLVTITINKALHGKENHEANGWKISRYKFFFLVFFASFIWNWFPTYIFQALSTFNWMTWIKPNNINLNQIFGG 240 (681)
T ss_pred ccCcCCCccHHHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhccCcchhhhhhhcc
Confidence 99999999999999999998654332 2 48999999999999999996 889986 445667888
Q ss_pred cccccccccCcceeeecccc--cccccccccHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCccccc------
Q 005868 244 FPSFGLTLFKNTFYFDFSPT--YVGCGLICPHIVNCSVLLGAIISWGFLWPFISQHAGDWYPADLGSNDFKGLY------ 315 (673)
Q Consensus 244 ~~glGl~~~~~~~t~Dws~~--~~G~gll~p~~~~~~~~~G~vl~~~il~P~l~~~~n~~~~~~~p~~s~~~~~------ 315 (673)
..|+|++| .+|||||+. +.|+|+++|+++++|+++|.+++++++.|++|| +|.|+++|+|++|++.||
T Consensus 241 ~~GlGl~p---~~tfDW~~I~~~~~spL~~P~~a~~n~~~G~~l~~~ii~P~lyy-~N~w~~~~lPi~s~~~fd~~G~~Y 316 (681)
T TIGR00727 241 STGLGINP---ISSFDWNQISGYINSPLVYPAWSYLTIYLGCILAFWIVIPAVYY-SNTWYCQYLPISSNGLYDNFGHSY 316 (681)
T ss_pred ccCCCcCC---cCcccHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHH-cccccccccCCccchhhhcCCCcc
Confidence 89999997 389999993 589999999999999999999999999999998 799999999999987664
Q ss_pred ---------------hhh----hhHHHHHHHhhH--HHHHHHHHHHHH----HHHHHHhhcCCCCCCcccccchhhhhhh
Q 005868 316 ---------------GYK----VFIAISLILGDG--LYNLIKIITITV----KEMWNRSTKDSKLPFVNDIQDTETSKLL 370 (673)
Q Consensus 316 ---------------~~~----~~~~~~~~~~~g--~~~l~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (673)
+|+ +|++++..+..+ ++.+.+.+.|.. +++++++|+ ++
T Consensus 317 ~vs~il~~~~~ld~~~y~~ysp~~l~~~~al~yg~~fA~~~a~i~h~~l~~~~~i~~~~~~-----------------~~ 379 (681)
T TIGR00727 317 NVTEILDKDNKFDVKKYQSYSPPFYSTTNAVSYGLSFASIPLMITHSIIVHGKLLFNALKD-----------------DD 379 (681)
T ss_pred ccceeeCCCCcCCHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc-----------------CC
Confidence 233 688887666555 466777777654 566666543 23
Q ss_pred hhhhhhhhhhccCCCchHHHHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHHHHhhhhhhhccccccccchhhHH
Q 005868 371 LEQKEREIVFLKDGIPTWFAASGYVGLAAISTATIPTIFPPLKWYLVLCSYLIAPALAFCNSYGTGLTDWNLASTYGKIG 450 (673)
Q Consensus 371 ~d~~~r~~~~~y~~vP~ww~~~~lvv~~~~~~~~~~~~~~~lp~w~~llai~l~~i~~~~~~~~~g~T~~~~~~~l~~l~ 450 (673)
.||+|.+.|++|||||+|||++++++++++++++++.+++++|||++++|+++++++.+|.++++|+||++++ +|+++
T Consensus 380 ~~D~h~rlM~~Y~evP~WWy~~~l~is~~~~~~~v~~~~t~lP~W~~~lal~l~~i~~iP~~~i~a~t~~~~~--ln~l~ 457 (681)
T TIGR00727 380 YPDPHSNLMKAYKEVPDWWYLAVFLGFFGMGIATVEHWPTETPVWGLFVCLIFNFVFLIPTTILQATTNISFG--LNVLT 457 (681)
T ss_pred CCChhHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHhhhheEeecCCccc--hhHHH
Confidence 4667777799999999999999999999999999999999999999999999999999999999999999988 99999
Q ss_pred HHHHHHhc-CCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHH-HHHHhhccc
Q 005868 451 LFIIASLV-GTDGGVIAGLAACGVMMSIVSTAADLMQDFKTGYLTLSSAKSMFVSQLLGTAMGCVIAPLT-FWMYWTAFD 528 (673)
Q Consensus 451 qli~g~~~-G~p~~~~anl~~~~~~~~~~~qa~~~~~DlK~G~y~~~pPr~~f~~Q~iG~ivg~~v~~~v-~~ll~~~~~ 528 (673)
|+|.|++. ||| +|||+||++++++.+||.++++|||+|||||+|||+||++|++|+++|++|++++ .|++.+++|
T Consensus 458 eli~Gy~~PG~p---~a~~~fk~~g~~~~~qa~~~~~DlKlGhY~kiPPR~~F~~Q~~gtl~~~~v~~~v~~~~l~~i~~ 534 (681)
T TIGR00727 458 EFIVGYALPGRP---LAMMIFKTFGYITDGQADNFVSDLKIGHYMKIPPRALFRGQCVATIWQIFVQIGVLNWAIGNIDN 534 (681)
T ss_pred HHHhhhccCCCc---hHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 99999999 888 9999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred CCCC--CCCCCCchHHHHHHHHHH-hhcCCCCCch---hhHHHHHHHHHHHH---HHHHHHhhcCccccccccccccccc
Q 005868 529 IGSP--DGPYKAPYAVIFREMAIL-GIEGFSELPK---HCLALCCGFFVAAL---VINLLRDATPTKISRFIPVPMAMAV 599 (673)
Q Consensus 529 i~~p--~~~~~~P~a~~~~~~s~~-g~~G~~~l~~---~y~~l~~~~~igai---i~~ll~~~~p~~~~~~i~~pv~~~~ 599 (673)
+|++ +++||||++++++++|++ |++||+|+|+ .|..+.|+|++|++ ++|+++|++||++.|++|.|++++.
T Consensus 535 ~c~~~~~~~ftcp~~~~~f~asv~Wg~iGP~r~F~~g~~Y~~l~~~fliGa~~pi~~~~~~r~~P~~~~~~~n~pv~~~~ 614 (681)
T TIGR00727 535 FCTADQNAKYTCPNAVVFFNASVIWGVIGPKRIFSHGYIYPGLKWFWLIGACIGIFFWLVWKKWPKFYPRYLDWPMLFVG 614 (681)
T ss_pred cCCCCCCCCccCCCccceeehehhhhhcchHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHhcchhhhhhCCccHHHhh
Confidence 9986 489999999999999999 9999999996 39999999999998 5899999999999999999999999
Q ss_pred ccccchhh----HHHHHHHHHHHHHHHHhccccccchhhhhhhhHHhhhHhHHHHHHH-HHHcC
Q 005868 600 PFYIGAYF----AIDMFVGTVILFIWELVNRKDSEDYAGAVASGLICGDGIWTIPSAI-LSIFR 658 (673)
Q Consensus 600 ~~~lp~~~----~~~~~~G~~i~~~~~r~~~~~~~~y~~~laaGL~aG~ai~gvi~a~-l~~~g 658 (673)
...+|+++ .....+|.+.++++|||+++||+||||+++||||+|++++++++++ ++..|
T Consensus 615 ~g~~~~a~~~n~~s~~~vg~~f~~~irr~~~~ww~kYnYvlsAald~G~a~~~~iiff~v~~~~ 678 (681)
T TIGR00727 615 TGYIPPATPYNYMYYTSVGLFFQYYMKKHHLNWWEKYNYVLSAGLDTGLVLSAIIIFFCLQLKD 678 (681)
T ss_pred ccccCCcchhhHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHhHheeEEEeCC
Confidence 67777653 3445688888888999999999999999999999999999999985 44444
No 3
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=100.00 E-value=3.8e-101 Score=890.61 Aligned_cols=583 Identities=27% Similarity=0.429 Sum_probs=478.7
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHhhhcc-----CCCCCCCCccchh
Q 005868 29 IPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKL-----GFSIKPFTRQENT 103 (673)
Q Consensus 29 ~~~~~~~lT~Ra~~lG~~l~~l~a~~n~~~~lr~g~~~~~si~~~lls~~lg~~~~~~lp~~-----~lnpgpf~~kE~~ 103 (673)
+.|++|++|+|+|++|++++++++++|+|+++|+|+++..++++|+++|+++|+|+|+||++ ++||||||+||||
T Consensus 10 ddp~~~~~T~Ra~~lG~i~~~v~~~~n~~~~lr~g~~~~~si~~~ll~~~~g~~~~~~lP~~~~~~~~lnpgpft~kE~~ 89 (654)
T TIGR00728 10 DDPSLPVITFRAWFLGILIGVVFAGVNQFFGLRTGSVSISSIVAALLAYPLGKLWALIIPDWEGWKFSLNPGPFNVKENN 89 (654)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHhcCCccccceecCCCCCChhhhe
Confidence 34567899999999999999999999999999999999999999999999999999999975 6899999999999
Q ss_pred hhhhhhhhccccccccchhhhHhHhhHHHHhhhcCCCCCCCCCCCCCCchhHHHHHHHHHHH--hhhhhhhhcccceeec
Q 005868 104 VIQTCVVACYGLAFSGGFGSSLLAMDERTYQLIGADYPGNRAEDVKNPGLGWMIGFVVVVSF--LGLFSLVPLRKVMILD 181 (673)
Q Consensus 104 iiq~~Asa~~~~~~~~~~~~~i~a~~~l~y~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l--lG~~~A~~lRr~lV~~ 181 (673)
++|++||++++.+ ++..++..+++||+. +.++++++++++++|+ +|+++|+|+||++|+|
T Consensus 90 ~iq~~asa~~~~~----~~~~~i~a~~~~~~~--------------~~~~~~~~l~~~~~~~~~lG~~~a~~lRr~lV~~ 151 (654)
T TIGR00728 90 LIQTAASACGGLA----YAIFILPAQKMFYTS--------------NFSWGYQILLVWSTQLGFLGFGFAGLLRRALVVP 151 (654)
T ss_pred eEEeeeeccccHH----HHHHHHHHHHHHcCC--------------CCCHHHHHHHHHHHHHHHhHHhhHHHhhhheeCc
Confidence 9999999997754 234444456778764 2356676666666655 9999999999999999
Q ss_pred CcCcCcchhhHHHHHHhhccCC----ccccchhhHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCccee
Q 005868 182 YKLTYPSGTATAMLINSFHTNT----GAELAGKQVRCLGKYLSISFFWSCFKWFFSGVGNSCGFDNFPSFGLTLFKNTFY 257 (673)
Q Consensus 182 ~~l~~P~~la~a~l~~slh~~~----~~~~~~~r~~~f~~~f~~~fi~~~~~wi~p~~~~~~~~~~~~glGl~~~~~~~t 257 (673)
++|+||+++|+++++|+||++. +.+..|..+..+...|...+.|.|++|+.|..... ....|+|+++ ++
T Consensus 152 ~~l~~P~~la~a~l~~al~~~~~~~~g~~~~r~l~~~~~~~f~~~~~~~~~~~~~p~~~~~---~~fgglg~~~----~~ 224 (654)
T TIGR00728 152 AKLPWPSGLATAELFKALHGKFHTANGDTIAKNLLRVLLKYFSSSFLWSFVSWFFPGFTAF---QTFGGLGSGS----IG 224 (654)
T ss_pred ccccCCcccHHHHHHHHhhhccCccCCCccchhHHHhHHHHHHHHHHHHHHHHHhcCCccc---cccccccccc----cc
Confidence 9999999999999999986532 11112222333456778889999999999962221 1123567775 67
Q ss_pred eeccc--ccccccccccHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCccccchhhh-hHHHHHHHhhHHHHH
Q 005868 258 FDFSP--TYVGCGLICPHIVNCSVLLGAIISWGFLWPFISQHAGDWYPADLGSNDFKGLYGYKV-FIAISLILGDGLYNL 334 (673)
Q Consensus 258 ~Dws~--~~~G~gll~p~~~~~~~~~G~vl~~~il~P~l~~~~n~~~~~~~p~~s~~~~~~~~~-~~~~~~~~~~g~~~l 334 (673)
|||++ +++|+|+++|+++++|+++|++++|+++.|++|| +|.|.++++|+++++.+|+|.. |.+++.|+.++.+.+
T Consensus 225 f~w~~s~~~~g~gli~p~~~~~~~~~G~vl~~~ii~P~l~~-~n~~~~~~~p~~s~~~~~~~~~~y~~~~~il~~~~~~l 303 (654)
T TIGR00728 225 FGWQQSSAYIGSGLITPFTVGLNMLLGVILAFGIVLPILYY-KNTWPADADPIDSSSTIDSTGVRYNSVGLIVVDGLWTL 303 (654)
T ss_pred eecHHhHhhcCCCccCCHHHHHHHHHHHHHHHHHHHHHHHh-cCccccccCCCcchhhhcCCCceeeeeeEEEeCCCcee
Confidence 87776 5789999999999999999999999999999998 6888888999988888988874 999888877664333
Q ss_pred HHH-------------------------HHHH----HHHHHHHhhcCCCCCCcccccchhhhhhhhhhhhhhhhhccCCC
Q 005868 335 IKI-------------------------ITIT----VKEMWNRSTKDSKLPFVNDIQDTETSKLLLEQKEREIVFLKDGI 385 (673)
Q Consensus 335 ~~~-------------------------i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~r~~~~~y~~v 385 (673)
.+. +.|. .++++++.|+... ..+|... +..++.++.+|++|+|+
T Consensus 304 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~~d~~~~~~~~v 376 (654)
T TIGR00728 304 VKPLYPIYSPLVLSIDFYALLFNAFSDTIYSFALAHGRDIISARRDHYK-----LGRDDHV--RLLSRDEDLKVKNYKEV 376 (654)
T ss_pred cHHHHHHhCcceeeHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh-----ccCCCCh--HHHhhcccccccccCcC
Confidence 211 1111 2444444433210 0000000 00000011236678999
Q ss_pred chHHHHHHHHHHHHHHHhhccccc--CCchHHHHHHHHHHHHHHHHhhhhhhhccccccccchhhHHHHHHHHhc-CCch
Q 005868 386 PTWFAASGYVGLAAISTATIPTIF--PPLKWYLVLCSYLIAPALAFCNSYGTGLTDWNLASTYGKIGLFIIASLV-GTDG 462 (673)
Q Consensus 386 P~ww~~~~lvv~~~~~~~~~~~~~--~~lp~w~~llai~l~~i~~~~~~~~~g~T~~~~~~~l~~l~qli~g~~~-G~p~ 462 (673)
|+|||+.++++++++++++++.++ +++|||++++++++++++++|+++++|+| ||.+++++++|+++|+++ |+|
T Consensus 377 P~ww~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~ilal~l~~i~~~~~~~~~g~t--np~~~l~~~~~li~g~~~pg~~- 453 (654)
T TIGR00728 377 PAWWYLSLLLVSFGLGIVVVEYYFGITQLPWWGVIVALIIAFVLAIPIGILAGIT--NPVSGLNIITELIIGYILPGRP- 453 (654)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHhhhheEEee--cccchhhHHHHHhheeecCCcc-
Confidence 999999999999999998888876 78999999999999999999999999999 666669999999999999 666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCchHH
Q 005868 463 GVIAGLAACGVMMSIVSTAADLMQDFKTGYLTLSSAKSMFVSQLLGTAMGCVIAPLTFWMYWTAFDIGSPDGPYKAPYAV 542 (673)
Q Consensus 463 ~~~anl~~~~~~~~~~~qa~~~~~DlK~G~y~~~pPr~~f~~Q~iG~ivg~~v~~~v~~ll~~~~~i~~p~~~~~~P~a~ 542 (673)
++||+++++++++++||.|++||||+|||+|+|||+||++|++|+++|++++++++.++.+++++ ++++|+||+++
T Consensus 454 --~a~l~~~~~~~~~~~qA~~~~qDlK~G~y~~~pPR~~f~~Qiig~~vg~~v~~~v~~~~~~~~~~--~~~~~~~p~a~ 529 (654)
T TIGR00728 454 --LANLAFKAYGFITAQQAGDFMQDLKTGHYMKAPPRAQFAAQLIGTIVGSLVNAPVLEWLYHAIGN--QNNNFTCPNAL 529 (654)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCCCccCCccc
Confidence 99999999999999999999999999999999999999999999999999999996666677776 45799999999
Q ss_pred HHHHHHHH-hhcCCCCCch---hhHHHHHHHHHHH--HHHHHHHhhcCcccccccccccccccccccchhhHHHHH----
Q 005868 543 IFREMAIL-GIEGFSELPK---HCLALCCGFFVAA--LVINLLRDATPTKISRFIPVPMAMAVPFYIGAYFAIDMF---- 612 (673)
Q Consensus 543 ~~~~~s~~-g~~G~~~l~~---~y~~l~~~~~iga--ii~~ll~~~~p~~~~~~i~~pv~~~~~~~lp~~~~~~~~---- 612 (673)
+++++|++ +++||+ +++ .|..+.+++++|. ++.++++|++|| ++||+|+|+++++++++|++++++++
T Consensus 530 ~~~~aa~~~g~~Gp~-~f~~~~~y~~~~~~~l~G~~~i~~~~~~~~~p~-~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~ 607 (654)
T TIGR00728 530 VFYNASLIWGVIGPK-IFSGKGLYCGLMWFFLVGVGAVLVWLVRKLFPK-WIKYINPPVAVGGGGYIPPATAVNYSTWAA 607 (654)
T ss_pred chhhheeeeccccch-hcCCCCccHHHHHHHHHHHHHHHHHHHHHHccc-hhhhcCHHHhhhhhhccCCcchhhhhHHHH
Confidence 99999998 899988 775 3788888888663 367888888887 78899999999999999999999999
Q ss_pred HHHHHHHHHHHhccccc--cchhhhhhhhHHhhhHhHHHHHHH
Q 005868 613 VGTVILFIWELVNRKDS--EDYAGAVASGLICGDGIWTIPSAI 653 (673)
Q Consensus 613 ~G~~i~~~~~r~~~~~~--~~y~~~laaGL~aG~ai~gvi~a~ 653 (673)
+|++++++||||+++|| +||||++||||||||+|+|+++++
T Consensus 608 vG~~~~~~~~rr~~~~~~~~~y~~~laagL~~G~al~gviiff 650 (654)
T TIGR00728 608 VGGFFNYRWRKNKRADWKAEKYNYVLAAGLIAGEALAGVIIFF 650 (654)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999988776 999999999999999999999874
No 4
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=100.00 E-value=2.2e-99 Score=874.25 Aligned_cols=584 Identities=26% Similarity=0.430 Sum_probs=486.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccchhhhhhhhhhccc
Q 005868 35 QITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYG 114 (673)
Q Consensus 35 ~lT~Ra~~lG~~l~~l~a~~n~~~~lr~g~~~~~si~~~lls~~lg~~~~~~lp~~~lnpgpf~~kE~~iiq~~Asa~~~ 114 (673)
|+|+|++++|++++++++++|+|+++|+|+++..++++||++|+++|.++|..+++++||||||+||||++|++||++++
T Consensus 1 ~lT~Ra~~lG~~~~~l~a~~n~y~~lk~g~~~~~si~~~il~~~~~~~~~~~~~~~~ln~gp~~~kE~~~vq~~asa~~~ 80 (624)
T PF03169_consen 1 QLTFRAVLLGILLGILGAAINQYFGLKTGWISIASIFAAILSFPIGRLLARIGWRFSLNPGPFTIKENNLVQTMASAAGG 80 (624)
T ss_pred CeeHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHhhccccccCCCCCCHHHHHHHHHHHHHhhh
Confidence 78999999999999999999999999999999999999999999999999977778899999999999999999999887
Q ss_pred cccccchhhhHhHhhHHHHhhhcCCCCCCCCCCCCCCchhHHHHHHHHHHHhhhhhhhhcccceeecCcCcCcchhhHHH
Q 005868 115 LAFSGGFGSSLLAMDERTYQLIGADYPGNRAEDVKNPGLGWMIGFVVVVSFLGLFSLVPLRKVMILDYKLTYPSGTATAM 194 (673)
Q Consensus 115 ~~~~~~~~~~i~a~~~l~y~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~llG~~~A~~lRr~lV~~~~l~~P~~la~a~ 194 (673)
.++++++...+|+ .+||++ +.++++++++++++|++|+++|+|+||++|+|++|+||+++|+++
T Consensus 81 ~~~a~~~i~~ipa--~~~~~~--------------~~~~~~~~l~~~~~~~lG~~~a~~lR~~lV~~~~l~fP~~~a~a~ 144 (624)
T PF03169_consen 81 MAYAAGFIAAIPA--LLFLGQ--------------PFSFGYLILWTLSTQLLGYGFAGPLRRFLVYPEKLPFPSGLATAE 144 (624)
T ss_pred hhhhhhHHHHHHH--HHHhcc--------------chhHHHHHHHHHHHHHHHHhhheeccccEEecccccCcchhHHHH
Confidence 6544444444444 356553 347888999999999999999999999999999999999999999
Q ss_pred HHHhhccCCccccchhhHHHHHHHHHHHHHHHHH-Hhhhccc---ccccccccccc-ccccccCcceeeecccccccccc
Q 005868 195 LINSFHTNTGAELAGKQVRCLGKYLSISFFWSCF-KWFFSGV---GNSCGFDNFPS-FGLTLFKNTFYFDFSPTYVGCGL 269 (673)
Q Consensus 195 l~~slh~~~~~~~~~~r~~~f~~~f~~~fi~~~~-~wi~p~~---~~~~~~~~~~g-lGl~~~~~~~t~Dws~~~~G~gl 269 (673)
++++||++++.+.+++|+|+|+++|.++++|+|+ .++.|.+ +..|....... .......++++||||++++|+|+
T Consensus 145 ~i~alh~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~~~~dws~~~~g~g~ 224 (624)
T PF03169_consen 145 LINALHSGGGWREAKSRAKFFGIAFLGSFIYYWLPQYIFPALSSFSWPCWIAPNNPWLNNLFGGWSFSFDWSPILIGSGL 224 (624)
T ss_pred HHHHhccCccchhhhhhHhHHHHHHHHHHHHHHHHHHHHhhhcccccceeeccccchHhhhcccceeeEeecHHhcCCCe
Confidence 9999998765566789999999999999999996 3444432 22332221111 11122234699999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCccccc---------hhhhhHHHHHHHhhHHHHH------
Q 005868 270 ICPHIVNCSVLLGAIISWGFLWPFISQHAGDWYPADLGSNDFKGLY---------GYKVFIAISLILGDGLYNL------ 334 (673)
Q Consensus 270 l~p~~~~~~~~~G~vl~~~il~P~l~~~~n~~~~~~~p~~s~~~~~---------~~~~~~~~~~~~~~g~~~l------ 334 (673)
++|+++++|+++|.+++|+++.|++|+.+|.|++.++|++|++.+| +|.+|.+.++++..+.+.+
T Consensus 225 i~p~~~~ls~~~G~v~~w~ii~P~l~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~ 304 (624)
T PF03169_consen 225 IVPLWAQLSMFLGAVLAWGIIIPILYYSGNAWGGAYLPFNSNSLFDNNGSSDGTLNWTKYIGYGPMYGSGLFALSYGWSF 304 (624)
T ss_pred eccHHHHHHHHHHHHHHHHhcCCeeeeeccccCCccccccchhhhhhcCccccccCHHHHHHHHHHHHhHHHHHhhcccc
Confidence 9999999999999999999999999985589999999977765444 5679999999998887766
Q ss_pred ---HHHHHHHH----HHHHHHhhcCCCCCCcccccchhhhhhhhhhhhhhhhhccCCCchHHHHHHHHHHHHHHHhhccc
Q 005868 335 ---IKIITITV----KEMWNRSTKDSKLPFVNDIQDTETSKLLLEQKEREIVFLKDGIPTWFAASGYVGLAAISTATIPT 407 (673)
Q Consensus 335 ---~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~r~~~~~y~~vP~ww~~~~lvv~~~~~~~~~~~ 407 (673)
.+.+.+.. +++++++++.+. +..+.+++.||+|+++|++|+|+|+|||+.++++++++++++++.
T Consensus 305 ~~~~~~i~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~d~~~~~~~~~~~vP~ww~~~~~~~~~v~~~~~~~~ 376 (624)
T PF03169_consen 305 AALTASIVHAILWHWKAIWQAFKQSKS--------SQRSSKSSEDDPHYRLMRTYKEVPMWWYLAGLVVSFVLAIIVVEA 376 (624)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhcc--------cccccccccCCchhhhhhhcCCcchHHHHHHHHHHHHHHHHHHhh
Confidence 23333333 333433322210 001113456788888899999999999999999999999999998
Q ss_pred cc--CCchHHHHHHHHHHHHHHHHhhhhhhhccccccccchhhHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHHHHHh
Q 005868 408 IF--PPLKWYLVLCSYLIAPALAFCNSYGTGLTDWNLASTYGKIGLFIIASLV-GTDGGVIAGLAACGVMMSIVSTAADL 484 (673)
Q Consensus 408 ~~--~~lp~w~~llai~l~~i~~~~~~~~~g~T~~~~~~~l~~l~qli~g~~~-G~p~~~~anl~~~~~~~~~~~qa~~~ 484 (673)
++ +++|+|++++++++++++++|+++++|+||+||.+++++++|+++|++. |+| ++||+++++++++++||.|+
T Consensus 377 ~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~~P~~~~~~~sqli~g~~~pg~~---~a~l~~~~~~~~~~~qa~~~ 453 (624)
T PF03169_consen 377 WFGQTQMPWWGLILAILLAFVFSIPSGRITGETGINPVSGLNILSQLIFGLLLPGNP---IANLLFGGYGYAAASQAGDL 453 (624)
T ss_pred hhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhhHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHHHHH
Confidence 88 7899999999999999999999999999999999999999999999999 566 99999999999999999999
Q ss_pred hhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC-CCCCCCchHHHHHHHHHH-hhcCCCCCchhh
Q 005868 485 MQDFKTGYLTLSSAKSMFVSQLLGTAMGCVIAPLTFWMYWTAFDIGSP-DGPYKAPYAVIFREMAIL-GIEGFSELPKHC 562 (673)
Q Consensus 485 ~~DlK~G~y~~~pPr~~f~~Q~iG~ivg~~v~~~v~~ll~~~~~i~~p-~~~~~~P~a~~~~~~s~~-g~~G~~~l~~~y 562 (673)
+||||+|||+|+|||+||++|++|+++|++++++++.++++.|.+..+ +++++||..++....+++ ++.|+.+ ..+|
T Consensus 454 ~~DlK~G~~l~~~Pr~~f~~Q~iG~~ig~~v~~~v~~l~~~~~~~~~~~~~~~~~~ap~a~~~aav~~g~~~~~~-~~~~ 532 (624)
T PF03169_consen 454 MQDLKTGHYLGIPPRAQFYAQIIGTIIGAFVAVAVMRLLNQAYPCGPDQGDSFSCPAPQAFAWAAVAWGLIGPQR-GLPY 532 (624)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCcCcchHHHHHHHHHHHhcCCcc-cchH
Confidence 999999999999999999999999999999999998777555544322 235666666666666666 7888755 5567
Q ss_pred HHHHHHHHHHHHH---HHHHHhhcCcccccccccccccc----cccccchhhHHHHHHHHHHHHHHHHhccccccchhhh
Q 005868 563 LALCCGFFVAALV---INLLRDATPTKISRFIPVPMAMA----VPFYIGAYFAIDMFVGTVILFIWELVNRKDSEDYAGA 635 (673)
Q Consensus 563 ~~l~~~~~igaii---~~ll~~~~p~~~~~~i~~pv~~~----~~~~lp~~~~~~~~~G~~i~~~~~r~~~~~~~~y~~~ 635 (673)
..+.+++++|++. .++.+|+ +|.+++++ +++++|.+.++.+++|+++++++|||+++||+||||+
T Consensus 533 ~~~~~~~~~G~~~~i~~~l~~~~--------~P~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~y~~~ 604 (624)
T PF03169_consen 533 SALPWGFLIGAVLPILFWLLQRK--------FPSPLAFGGASSIGFYLPSNYTSAIFIGGLFQFYWRRRYPKWWEKYNYV 604 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--------CChhheeeecccccccchhHHHHHHHHHHHHHHHhhhcchhHHHhHhhH
Confidence 7888998888873 4455554 45558888 8999999999999999999999999999999999999
Q ss_pred hhhhHHhhhHhHHHHHHHH
Q 005868 636 VASGLICGDGIWTIPSAIL 654 (673)
Q Consensus 636 laaGL~aG~ai~gvi~a~l 654 (673)
+||||||||+|++++++++
T Consensus 605 laagl~aG~~l~~li~~~~ 623 (624)
T PF03169_consen 605 LAAGLIAGEALMGLIIAFL 623 (624)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999864
No 5
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=100.00 E-value=2.3e-79 Score=691.65 Aligned_cols=554 Identities=19% Similarity=0.250 Sum_probs=432.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccchhhhhhhhhhccc
Q 005868 35 QITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYG 114 (673)
Q Consensus 35 ~lT~Ra~~lG~~l~~l~a~~n~~~~lr~g~~~~~si~~~lls~~lg~~~~~~lp~~~lnpgpf~~kE~~iiq~~Asa~~~ 114 (673)
|+|+|++++|++++++++++|.|++||.|+++++|+++++++|.+.|.+.| +|++|||++||+||++++
T Consensus 1 elT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~~-----------~t~~EnnivQT~asA~~~ 69 (591)
T TIGR00733 1 EYTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFRD-----------RSILENNMVQTAASAAGT 69 (591)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhcc-----------CChhHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999998754 599999999999999988
Q ss_pred cccccchhhhHhHhhHHHHhhhcCCCCCCCCCCCCCCchhHHHHHHHHHHHhhhhhhhhcccceeecCcCcCcchhhHHH
Q 005868 115 LAFSGGFGSSLLAMDERTYQLIGADYPGNRAEDVKNPGLGWMIGFVVVVSFLGLFSLVPLRKVMILDYKLTYPSGTATAM 194 (673)
Q Consensus 115 ~~~~~~~~~~i~a~~~l~y~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~llG~~~A~~lRr~lV~~~~l~~P~~la~a~ 194 (673)
++ ++...+|++..+ | .|.+.+++..+.++++.+++|++|+.||||++|++++|+||+++|+|+
T Consensus 70 ~a---g~~~~lPAl~~l-----g---------~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~~~L~fP~G~A~Ae 132 (591)
T TIGR00733 70 LS---SVIFVLPALLML-----G---------YWTEFPYWITTVICALGGSLGVLFTIPLRRAFVVESKLPYPEGVACAE 132 (591)
T ss_pred HH---HHHHHHHHHHhc-----C---------ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHH
Confidence 65 466778886433 2 122356777788899999999999999999999999999999999999
Q ss_pred HHHhhccCCccccchhhHHHHHHHHHHHHHHHHHHhh--hccccccccccccccccccccCcceeeeccccccccccccc
Q 005868 195 LINSFHTNTGAELAGKQVRCLGKYLSISFFWSCFKWF--FSGVGNSCGFDNFPSFGLTLFKNTFYFDFSPTYVGCGLICP 272 (673)
Q Consensus 195 l~~slh~~~~~~~~~~r~~~f~~~f~~~fi~~~~~wi--~p~~~~~~~~~~~~glGl~~~~~~~t~Dws~~~~G~gll~p 272 (673)
++++. +++ + +++|.|.++.++..+++|.++.-+ .|. . .+.....|.. .+.+++||||+++|.|+++|
T Consensus 133 ~l~~g--~~g-~-~~~~~~~l~~g~~~s~~~~~~~~~~~~~~-~----~~~~~~~g~~--~~~~~~~~SpalvG~G~ivG 201 (591)
T TIGR00733 133 VLKAG--DKA-R-NGTGAKPIAYGGILASIYAFLGSLRVWSG-T----LSAAKLVGRR--ALYFGSDLSLALIGVGYLVG 201 (591)
T ss_pred HHHcc--ccc-c-chhhHHHHHHHHHHHHHHHHHHHhccCCc-h----HHHHHhcCCc--ceEEEecccHHHHcCceeeC
Confidence 99974 222 1 356788888899999999887311 111 0 0000001111 23577899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCc--cccchhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 005868 273 HIVNCSVLLGAIISWGFLWPFISQHAGDWYPADLGSNDF--KGLYGYKVFIAISLILGDGLYNLIKIITITVKEMWNRST 350 (673)
Q Consensus 273 ~~~~~~~~~G~vl~~~il~P~l~~~~n~~~~~~~p~~s~--~~~~~~~~~~~~~~~~~~g~~~l~~~i~~~~~~~~~~~~ 350 (673)
+++++++++|++++|+++.|++.. +.|.+++.+..+. .....|.+|+|+++|++++++++.+.+...++.+++.++
T Consensus 202 ~~v~~s~~~G~vlaWgvl~P~l~~--~~~~~~~~~~~~~~~~vw~~~vR~iGvg~m~~~gl~~l~~~~~~~~~~~~~~~~ 279 (591)
T TIGR00733 202 LNIGFAMFLGGAIAWGVAIPIYTA--KMGSPGDLSALDLAWTIWSTKVRYIGVGAIVVAALWTLLKLRGPIARGIKAGLE 279 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCCccHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999864 4576655443211 122345688999999999999999888777777776665
Q ss_pred cCCCCCCcccccchhhhhhhhhhhhhhhhhccCCCchHHHHHHHHHHHHHHHhhcccccCCch--------H-HHHHHHH
Q 005868 351 KDSKLPFVNDIQDTETSKLLLEQKEREIVFLKDGIPTWFAASGYVGLAAISTATIPTIFPPLK--------W-YLVLCSY 421 (673)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~d~~~r~~~~~y~~vP~ww~~~~lvv~~~~~~~~~~~~~~~lp--------~-w~~llai 421 (673)
..+. +++.+|.. +..+|+|.|+...++++ +++. +.... .+.| + .+.++++
T Consensus 280 ~~~~-------------~~~~~~~~----r~~~dip~~~v~~~~~~-~~~~--~~~~~-~~~~~~~~~~~~~~~~~~la~ 338 (591)
T TIGR00733 280 AARR-------------RQAGEAVL----RTEEDLPINIVLTLVAL-FVIP--LADFL-LYAPILHNIGMAIAVMAVLML 338 (591)
T ss_pred Hhcc-------------cccccccc----cccccccHHHHHHHHHH-HHHH--HHHHh-cCCcccchhhHHHHHHHHHHH
Confidence 4431 01111122 23568998865443322 2222 11111 1223 2 4668888
Q ss_pred HHHHHHHHhhhhhhhc--cccccccchhhHHHHHHHHhc---C-------CchHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005868 422 LIAPALAFCNSYGTGL--TDWNLASTYGKIGLFIIASLV---G-------TDGGVIAGLAACGVMMSIVSTAADLMQDFK 489 (673)
Q Consensus 422 ~l~~i~~~~~~~~~g~--T~~~~~~~l~~l~qli~g~~~---G-------~p~~~~anl~~~~~~~~~~~qa~~~~~DlK 489 (673)
+++++++..++|+.|+ ||.||.+++++++|++++.+. | +|+++.+|++.+++.+.+++||+|++||||
T Consensus 339 vl~f~~a~v~g~~~G~iGts~nPvsg~~~~t~l~~a~~~~~~g~~~~~~~~~~~v~~~L~~g~vv~~aa~~AgD~mqDlK 418 (591)
T TIGR00733 339 IIGFFVAAIAGYMAGLVGSSNSPISGIGIMSVLFTALILKGLGLSGTGSQIPELMAATIFTAAVVCTAAAISNDNLQDLK 418 (591)
T ss_pred HHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHhcCcccCccccchhHHHHHHHHHHHHHHHHHHHHHhHhhH
Confidence 8899999999999999 888999999999999999987 2 167899999999999999999999999999
Q ss_pred hhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC-----CCCCCCCchHHHHHHHHHHhhcCCCCCchhhHH
Q 005868 490 TGYLTLSSAKSMFVSQLLGTAMGCVIAPLTFWMYWTAFDIGS-----PDGPYKAPYAVIFREMAILGIEGFSELPKHCLA 564 (673)
Q Consensus 490 ~G~y~~~pPr~~f~~Q~iG~ivg~~v~~~v~~ll~~~~~i~~-----p~~~~~~P~a~~~~~~s~~g~~G~~~l~~~y~~ 564 (673)
+||++|++||+||++|++|+++|++++++++.+++++|++.+ |+++|++|||.+|+++++ |+.. +.+++.
T Consensus 419 tG~LlGatPr~Q~~aq~iG~~vg~~v~~~v~~ll~~ayg~~~~~~~~~~~~l~APqA~l~~ava~-gi~~-~~l~~~--- 493 (591)
T TIGR00733 419 TGYLVGATPWRQQVALIIGTFVGALVMAPVLNLLIKAYGIAGTPTAKGENALPAPQAFLMAAVTE-GVFT-GTLEWT--- 493 (591)
T ss_pred hhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccccCCCHHHHHHHHHh-hhcC-CCccHH---
Confidence 999999999999999999999999999999999999998753 467899999999999874 2332 223322
Q ss_pred HHHHHHHHHHHHHHHHhhcCcccccccccccccccccccchhhHHHHHHHHHHHHHHHHhcccc------ccchhhhhhh
Q 005868 565 LCCGFFVAALVINLLRDATPTKISRFIPVPMAMAVPFYIGAYFAIDMFVGTVILFIWELVNRKD------SEDYAGAVAS 638 (673)
Q Consensus 565 l~~~~~igaii~~ll~~~~p~~~~~~i~~pv~~~~~~~lp~~~~~~~~~G~~i~~~~~r~~~~~------~~~y~~~laa 638 (673)
+..+..+.++++.++++..+++++|+-.+++++++|+|+|+++++++++|++++|+|+||+++. .+++++++||
T Consensus 494 ~i~~ga~~g~~l~~~~~~~~~~~~~~~~p~lavgig~yLP~~~s~~~~iG~li~~~~~r~~~~~~~~~~~~~~~g~~vAS 573 (591)
T TIGR00733 494 MVFIGAGIGIALIIIDEILAKRGSKFRTPVMAVGVGIYLPLSLGVPILLGAFLARILVSRGRKEGESFTDKKRLGVLGAA 573 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCchhHHHHHhhcchhHHHHHHHHHHHHHHHHHhcccccchhhhhhceeeEEec
Confidence 2223334455778888877766555544579999999999999999999999999999976532 2478999999
Q ss_pred hHHhhhHhHHHHHHHHH
Q 005868 639 GLICGDGIWTIPSAILS 655 (673)
Q Consensus 639 GL~aG~ai~gvi~a~l~ 655 (673)
||++||+|+|++++++.
T Consensus 574 GLIaGE~l~Gv~~A~~~ 590 (591)
T TIGR00733 574 GLIVGESLTGVVFAAII 590 (591)
T ss_pred HhhcchHHHHHHHHHHh
Confidence 99999999999999753
No 6
>COG1297 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=6.1e-62 Score=524.34 Aligned_cols=563 Identities=18% Similarity=0.261 Sum_probs=415.3
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccchhhhhhhhhh
Q 005868 32 WKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVA 111 (673)
Q Consensus 32 ~~~~lT~Ra~~lG~~l~~l~a~~n~~~~lr~g~~~~~si~~~lls~~lg~~~~~~lp~~~lnpgpf~~kE~~iiq~~Asa 111 (673)
++||+|+|++++|+++++++.+.|+|+|+|.|+|.+.+|+++++|+.+.|.++ ++|+.|||++||+||+
T Consensus 11 ~l~elTlr~vIlGilitvi~~aaN~yLGL~vGlT~a~SIPAAVISmavlk~~~-----------~~silENNmVQT~ASA 79 (624)
T COG1297 11 FLPELTLRGVILGILITVIFLAANVYLGLKVGLTFASSIPAAVISMAVLKAFK-----------GSSILENNMVQTQASA 79 (624)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHhhhheecceehhhhHHHHHHHHHHHHhC-----------ccchhhhHHHHHHHhh
Confidence 77999999999999999999999999999999999999999999999999865 3699999999999999
Q ss_pred ccccccccchhhhHhHhhHHHHhhhcCCCCCCCCCCCCCCchhHHHHHHHHHHHhhhhhhhhcccceeecCcCcCcchhh
Q 005868 112 CYGLAFSGGFGSSLLAMDERTYQLIGADYPGNRAEDVKNPGLGWMIGFVVVVSFLGLFSLVPLRKVMILDYKLTYPSGTA 191 (673)
Q Consensus 112 ~~~~~~~~~~~~~i~a~~~l~y~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~llG~~~A~~lRr~lV~~~~l~~P~~la 191 (673)
++..+. +....+|++..+- +|.+.++.....++.+.+++|+.|+.||||.+|.++++||||+.|
T Consensus 80 agtlsa--~vIFviPgl~m~g--------------~w~~fpf~~t~~i~~lggiLGvlftiPLRra~Iv~skLPyPeGvA 143 (624)
T COG1297 80 AGTLSA--GVIFVLPGLLMLG--------------YWSGFPFWQTAIICALGGILGVLFTIPLRRAMIVESKLPYPEGVA 143 (624)
T ss_pred hccccc--cEEEechhHHhhc--------------cccCCcHHHHHHHHHHHhhcceEEEEEeeeeeeccCCCCCCCchh
Confidence 987762 3444566665442 244567755556678999999999999999999999999999999
Q ss_pred HHHHHHhhccCCccccchhhHHHHHHHHHHHHHHHHHH----hhhccccccccccccccccccccCcceeeecccccccc
Q 005868 192 TAMLINSFHTNTGAELAGKQVRCLGKYLSISFFWSCFK----WFFSGVGNSCGFDNFPSFGLTLFKNTFYFDFSPTYVGC 267 (673)
Q Consensus 192 ~a~l~~slh~~~~~~~~~~r~~~f~~~f~~~fi~~~~~----wi~p~~~~~~~~~~~~glGl~~~~~~~t~Dws~~~~G~ 267 (673)
+||++++..+++++. +..|-...++..+.+|.++. -++..++ +.++ .+-+.. .+..|.|++++|.
T Consensus 144 aAEvL~~g~~~~gd~---~g~~~i~~g~~~~~~~~~l~~g~~~~~~~~~--~~~~--~~~~~~----~lg~~~S~AliG~ 212 (624)
T COG1297 144 AAEVLKAGNQREGDA---SGIKLIALGGALAALYSLLASGLRVIASSLS--AAFS--VGRAAF----ALGLGLSLALIGA 212 (624)
T ss_pred HHHHHHhcCCCCCCc---ccchhhhhhhHHHHHHHHHhccceeehhhHH--HHHH--hcchhh----hhcccccHHHhCc
Confidence 999999986444332 23344556666777777662 0111000 0000 011111 2567788999999
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCC--ccccchhhhhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 005868 268 GLICPHIVNCSVLLGAIISWGFLWPFISQHAGDWYPADLGSND--FKGLYGYKVFIAISLILGDGLYNLIKIITITVKEM 345 (673)
Q Consensus 268 gll~p~~~~~~~~~G~vl~~~il~P~l~~~~n~~~~~~~p~~s--~~~~~~~~~~~~~~~~~~~g~~~l~~~i~~~~~~~ 345 (673)
|+++|+.+.+-++.|.+++|++..|++-+ +.|.+++..... +..++.+.+|+++|.+...+++++.+...+..+.+
T Consensus 213 GylvGl~~~iaml~G~~iaWgvavP~~~~--~~~~p~~~~~~~~a~~vW~s~VrfIGaG~i~i~~~wtl~~l~~pi~~gi 290 (624)
T COG1297 213 GYLVGLPAGIAMLIGIFIAWGVAVPLLTL--IVPGPSDQEAGVQAWKVWSSKVRFIGAGAIAIAAIWTLISLLGPILRGI 290 (624)
T ss_pred eEEecchHHHHHHHHHHHHHHHHHHHHHh--cccCCCchhHHHHHHHHhhheeEEeehhHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999998743 455544222111 12223445999999999999999999888888888
Q ss_pred HHHhhcCCCCCCcccccchhhhhhhhhhhhhhhhhccCCCchHHHHHHHHHHHHHHHhhc-cccc--C---Cch----HH
Q 005868 346 WNRSTKDSKLPFVNDIQDTETSKLLLEQKEREIVFLKDGIPTWFAASGYVGLAAISTATI-PTIF--P---PLK----WY 415 (673)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~r~~~~~y~~vP~ww~~~~lvv~~~~~~~~~-~~~~--~---~lp----~w 415 (673)
++.++..+.+ ++..+ +.| ..+|+|..|-...++ +..+.+... .+.. + ... .-
T Consensus 291 ~~~f~~~r~~------------~~~~~-~~r----te~Dl~~~~~~~~~~-~~~v~l~~~~~~~l~~~~~~~~~~~~~~~ 352 (624)
T COG1297 291 KATFESARGR------------RRAGA-VSR----TERDLPPKLVLLVLL-ATVVALGLLLAHFLRGTPLSSCRWLLVVV 352 (624)
T ss_pred HHHHHHhhcc------------ccccc-ccc----hhhcCChhhHHHHHH-HHHHHHHHHHHhhhccCcccchhhHHHHH
Confidence 8777655410 01111 113 346888776544433 334443332 1111 0 112 34
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcc--ccccccchhhHHHHHHHHhc---C-----------CchHHHHHHHHHHHHHHHHH
Q 005868 416 LVLCSYLIAPALAFCNSYGTGLT--DWNLASTYGKIGLFIIASLV---G-----------TDGGVIAGLAACGVMMSIVS 479 (673)
Q Consensus 416 ~~llai~l~~i~~~~~~~~~g~T--~~~~~~~l~~l~qli~g~~~---G-----------~p~~~~anl~~~~~~~~~~~ 479 (673)
++++++++++.++-.++++.|.. ..+|.++++++++++.+.++ | +|..+.++++.+++.+.++.
T Consensus 353 ~~~i~~v~GflvaAv~gymagLVgSssspiSGi~i~~v~~~~l~~l~~G~~~~~~~~~~~~~~~~~~~~~t~~vv~a~A~ 432 (624)
T COG1297 353 MVLIAVVIGFLVAAVCGYMAGLVGSSSSPISGIGILSVTLLSLLILILGQSGGLFIDPLMRKFLVAATLFTASVVAAVAA 432 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCcchHHHHHHHHHHHHHHHhccccccccCcccchhHHHHHHHHHHHHHHHHH
Confidence 45667778888889999999994 45677777777777764444 4 24567889999999999999
Q ss_pred HHHHhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC-C---CCCCCCchHHHHHHHHHHhhcCC
Q 005868 480 TAADLMQDFKTGYLTLSSAKSMFVSQLLGTAMGCVIAPLTFWMYWTAFDIGS-P---DGPYKAPYAVIFREMAILGIEGF 555 (673)
Q Consensus 480 qa~~~~~DlK~G~y~~~pPr~~f~~Q~iG~ivg~~v~~~v~~ll~~~~~i~~-p---~~~~~~P~a~~~~~~s~~g~~G~ 555 (673)
++.|.+||||+||++|.+||+||.+|++|+++++++..+++-+++++|++.. + ..+.++||+..+.+.+. |+.+
T Consensus 433 is~DnlQDLKTG~LvgATPwkQqvaliiG~~~~alvi~pvL~ll~~aYgf~ga~~r~~~~l~apqa~lma~ia~-Gvf~- 510 (624)
T COG1297 433 ISNDNLQDLKTGYLVGATPWKQQVALIIGCFVGALVIAPVLELLNKAYGFAGAPPRQGMDLAAPQATLMATIAK-GVFT- 510 (624)
T ss_pred hhccchhhhhhCeeecCChHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCcCCCCCCCCCCCcchHHHHHHHHhc-ccCC-
Confidence 9999999999999999999999999999999999999999999999999874 1 23389999999877652 3332
Q ss_pred CCCchhhHHHHHHHHHHH-HHHHHHHhhcCcccccccccccccccccccchhhHHHHHHHHHHHHHHHHhcc-------c
Q 005868 556 SELPKHCLALCCGFFVAA-LVINLLRDATPTKISRFIPVPMAMAVPFYIGAYFAIDMFVGTVILFIWELVNR-------K 627 (673)
Q Consensus 556 ~~l~~~y~~l~~~~~iga-ii~~ll~~~~p~~~~~~i~~pv~~~~~~~lp~~~~~~~~~G~~i~~~~~r~~~-------~ 627 (673)
+.+.|.+ +...++. +.+.....+.++++.|+.++++++++|.|+|++.+.++++|++++|.++|+.+ +
T Consensus 511 ~~lew~m----i~~g~~~gi~lI~id~~l~~~~~~~~lpvlAvGvGIylP~s~~ipi~vG~~l~~~v~~~~~~~~~~~~e 586 (624)
T COG1297 511 GNLEWSM----ILAGAGIGIVLIGIDERLKGRGGKLRLPVLAVGVGIYLPPSLTIPIFVGGVLRWAVDRKLKKGDERYKE 586 (624)
T ss_pred CCcchHH----HHHHHhHhheeeeccHHHhcCCccccccceeeeeeeecChhhchHHHHHHHHHHHHHHhcccccchhhh
Confidence 4444442 1111111 12222333333356666666999999999999999999999999999988743 2
Q ss_pred cccchhhhhhhhHHhhhHhHHHHHHHHHHcC
Q 005868 628 DSEDYAGAVASGLICGDGIWTIPSAILSIFR 658 (673)
Q Consensus 628 ~~~~y~~~laaGL~aG~ai~gvi~a~l~~~g 658 (673)
..++.++++|||||+||+|+|++++.+...+
T Consensus 587 ~~~r~gvl~aaGLIvGEsL~gvi~a~ii~~~ 617 (624)
T COG1297 587 RAKRIGVLFAAGLIVGESLFGVITALIIVGS 617 (624)
T ss_pred cccceeEEEeeccccchHHHHHHHHHHheec
Confidence 3467899999999999999999999877754
No 7
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=93.18 E-value=11 Score=43.92 Aligned_cols=149 Identities=14% Similarity=0.049 Sum_probs=83.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCchHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHH
Q 005868 495 LSSAKSMFVSQLLGTAMGCVIAPLTFWMYWTAFDIGSPDGPYKAPYAVIFREMAILGIEGFSELPKHCLALCCGFFVAAL 574 (673)
Q Consensus 495 ~~pPr~~f~~Q~iG~ivg~~v~~~v~~ll~~~~~i~~p~~~~~~P~a~~~~~~s~~g~~G~~~l~~~y~~l~~~~~igai 574 (673)
..|...+...=+.|.++|.+..++++..+-..+ +++=|...+-...=..|-.|+. - ...+.+..+++++++
T Consensus 88 ~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~~-------~L~fP~G~A~Ae~l~~g~~g~~-~-~~~~~l~~g~~~s~~ 158 (591)
T TIGR00733 88 EFPYWITTVICALGGSLGVLFTIPLRRAFVVES-------KLPYPEGVACAEVLKAGDKARN-G-TGAKPIAYGGILASI 158 (591)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-------CCCCCCHHHHHHHHHccccccc-h-hhHHHHHHHHHHHHH
Confidence 345567777777899999999999854442222 3444444332222111323210 0 123445555555555
Q ss_pred HHHHH-HhhcCc---cc---------ccccccccccccccccchhhHHHHHHHHHHHHHH-----HHhc--cc-------
Q 005868 575 VINLL-RDATPT---KI---------SRFIPVPMAMAVPFYIGAYFAIDMFVGTVILFIW-----ELVN--RK------- 627 (673)
Q Consensus 575 i~~ll-~~~~p~---~~---------~~~i~~pv~~~~~~~lp~~~~~~~~~G~~i~~~~-----~r~~--~~------- 627 (673)
..++- -|.+|. .| ...=.+|..+|.|+..++..+..++.|++++|.. .++. +.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~SpalvG~G~ivG~~v~~s~~~G~vlaWgvl~P~l~~~~~~~~~~~~~~~ 238 (591)
T TIGR00733 159 YAFLGSLRVWSGTLSAAKLVGRRALYFGSDLSLALIGVGYLVGLNIGFAMFLGGAIAWGVAIPIYTAKMGSPGDLSALDL 238 (591)
T ss_pred HHHHHHhccCCchHHHHHhcCCcceEEEecccHHHHcCceeeChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHH
Confidence 32221 122231 01 0112358889999999999999999999999872 2211 11
Q ss_pred ---cccchhhhhhhhHHhhhHhHHHHHH
Q 005868 628 ---DSEDYAGAVASGLICGDGIWTIPSA 652 (673)
Q Consensus 628 ---~~~~y~~~laaGL~aG~ai~gvi~a 652 (673)
-|.+|---++.|++.++++..++..
T Consensus 239 ~~~vw~~~vR~iGvg~m~~~gl~~l~~~ 266 (591)
T TIGR00733 239 AWTIWSTKVRYIGVGAIVVAALWTLLKL 266 (591)
T ss_pred HHHHHhcccchhhHHHHHHHHHHHHHHH
Confidence 1222211268999999999988754
No 8
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=88.15 E-value=18 Score=42.65 Aligned_cols=27 Identities=19% Similarity=0.497 Sum_probs=24.4
Q ss_pred ccccccccccchhhHHHHHHHHHHHHH
Q 005868 594 PMAMAVPFYIGAYFAIDMFVGTVILFI 620 (673)
Q Consensus 594 pv~~~~~~~lp~~~~~~~~~G~~i~~~ 620 (673)
++.++.++..|.....++++|.+++|+
T Consensus 217 ~~~~g~g~i~p~~~~ls~~~G~v~~w~ 243 (624)
T PF03169_consen 217 PILIGSGLIVPLWAQLSMFLGAVLAWG 243 (624)
T ss_pred HHhcCCCeeccHHHHHHHHHHHHHHHH
Confidence 666899999999999999999999986
No 9
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=55.51 E-value=6.2 Score=34.07 Aligned_cols=44 Identities=18% Similarity=0.226 Sum_probs=34.3
Q ss_pred hhhccchhhhccCCCCCCCCcch-HHHHHHHHHHHHHHHHHHHhh
Q 005868 15 IAAVNDEEEEADQPIPEWKDQIT-IRGLVASAIMGTLFCIITHKL 58 (673)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~lT-~Ra~~lG~~l~~l~a~~n~~~ 58 (673)
.||++-|.|++++-.......++ +++|++|++-+++++.+-..+
T Consensus 48 lD~i~reRe~dee~k~~n~Knir~~KmwilGlvgTi~gsliia~l 92 (98)
T PF11166_consen 48 LDEINREREEDEENKKKNDKNIRDIKMWILGLVGTIFGSLIIALL 92 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888887777777677 999999999888777665444
No 10
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=40.59 E-value=36 Score=23.22 Aligned_cols=18 Identities=6% Similarity=0.303 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 005868 40 GLVASAIMGTLFCIITHK 57 (673)
Q Consensus 40 a~~lG~~l~~l~a~~n~~ 57 (673)
+|++|+.+.+.++.+|..
T Consensus 5 aWilG~~lA~~~~v~~a~ 22 (30)
T TIGR02106 5 AWILGTLLACAFGVLNAM 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999998863
No 11
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=39.26 E-value=40 Score=22.67 Aligned_cols=18 Identities=11% Similarity=0.311 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 005868 40 GLVASAIMGTLFCIITHK 57 (673)
Q Consensus 40 a~~lG~~l~~l~a~~n~~ 57 (673)
+|++|+.+++.++.+|..
T Consensus 5 aWilG~~lA~~~~i~~a~ 22 (28)
T PF08173_consen 5 AWILGVLLACAFGILNAM 22 (28)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999988863
No 12
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=38.39 E-value=4.2e+02 Score=31.18 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=14.5
Q ss_pred CCcccccchhhHhhhhccchhhhccCCCCCCC
Q 005868 2 GTEVEVSEPLIEKIAAVNDEEEEADQPIPEWK 33 (673)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (673)
+.|+|.+|. |++++.....|+||+|..-.+
T Consensus 9 ~~~~~~~~~--~~~~~~a~~~~~~~~p~g~~~ 38 (599)
T PF06609_consen 9 GLDLASQPD--DRIRAEALGTEADELPDGYYR 38 (599)
T ss_pred hccCCCCcc--hhHHHHHhcCchhhCCCCcee
Confidence 346666665 444444444444444444433
No 13
>PRK14749 hypothetical protein; Provisional
Probab=38.25 E-value=43 Score=22.73 Aligned_cols=18 Identities=0% Similarity=-0.092 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 005868 40 GLVASAIMGTLFCIITHK 57 (673)
Q Consensus 40 a~~lG~~l~~l~a~~n~~ 57 (673)
+|++|+.+++.++.+|..
T Consensus 5 aWiLG~~lAc~f~ilna~ 22 (30)
T PRK14749 5 LWFVGILLMCSLSTLVLV 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999998863
No 14
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.13 E-value=1.2e+02 Score=32.74 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=18.6
Q ss_pred ccCCCc-hHHHHHHHHHHHHHHHhhcccccC
Q 005868 381 LKDGIP-TWFAASGYVGLAAISTATIPTIFP 410 (673)
Q Consensus 381 ~y~~vP-~ww~~~~lvv~~~~~~~~~~~~~~ 410 (673)
.|+..| +|+.+.++++..++++++...|+.
T Consensus 182 ~yep~~~~~~vl~~~fvl~tlaivLFPLWP~ 212 (372)
T KOG2927|consen 182 IYEPRPLMWQVLGVLFVLVTLAIVLFPLWPR 212 (372)
T ss_pred eccCCchhHHHHHHHHHHHHHHHHhcccCcH
Confidence 466666 555555555666677766677763
No 15
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=28.96 E-value=75 Score=22.29 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 005868 39 RGLVASAIMGTLFCIITHK 57 (673)
Q Consensus 39 Ra~~lG~~l~~l~a~~n~~ 57 (673)
-+|++|+++++-++.+|..
T Consensus 4 FaWiLG~lLAcAFgiinAl 22 (37)
T COG4890 4 FAWILGLLLACAFGIINAL 22 (37)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3799999999999888864
No 16
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=23.25 E-value=1.3e+03 Score=27.36 Aligned_cols=27 Identities=11% Similarity=0.252 Sum_probs=22.9
Q ss_pred ccccccccccchhhHHHHHHHHHHHHH
Q 005868 594 PMAMAVPFYIGAYFAIDMFVGTVILFI 620 (673)
Q Consensus 594 pv~~~~~~~lp~~~~~~~~~G~~i~~~ 620 (673)
|..++.++..|.....+++.|++++|+
T Consensus 231 ~~~~g~gli~p~~~~~~~~~G~vl~~~ 257 (654)
T TIGR00728 231 SAYIGSGLITPFTVGLNMLLGVILAFG 257 (654)
T ss_pred HhhcCCCccCCHHHHHHHHHHHHHHHH
Confidence 445677888999999999999999976
No 17
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=23.05 E-value=2.2e+02 Score=26.50 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=26.0
Q ss_pred CchHHHHHHHHHHHHHHHHhhhhhhhccccccccchhhHHHHHHHHhc
Q 005868 411 PLKWYLVLCSYLIAPALAFCNSYGTGLTDWNLASTYGKIGLFIIASLV 458 (673)
Q Consensus 411 ~lp~w~~llai~l~~i~~~~~~~~~g~T~~~~~~~l~~l~qli~g~~~ 458 (673)
+.|||..+ +-+++.++...+....-.-|......+....|++.+.+.
T Consensus 62 ~~p~w~~l-GG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~i 108 (138)
T PF04657_consen 62 SVPWWAYL-GGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLI 108 (138)
T ss_pred cCChHHhc-cHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 56777765 444555554444444444444333334566777777665
Done!