Query 005868
Match_columns 673
No_of_seqs 147 out of 1316
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 09:38:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005868.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005868hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3llq_A Aquaporin Z 2; aquapori 30.2 4.1E+02 0.014 26.2 12.5 16 497-512 156-171 (256)
2 1n0w_B Breast cancer type 2 su 13.4 68 0.0023 21.5 1.1 21 2-22 13-33 (35)
3 3m91_B Prokaryotic ubiquitin-l 7.6 1E+02 0.0035 21.9 0.3 16 8-23 16-31 (44)
4 2jwa_A Receptor tyrosine-prote 6.8 3.9E+02 0.014 19.0 3.1 18 610-627 24-41 (44)
5 2knc_A Integrin alpha-IIB; tra 6.6 4.7E+02 0.016 19.4 3.6 7 384-390 9-15 (54)
6 2k1a_A Integrin alpha-IIB; sin 5.8 6.1E+02 0.021 17.7 3.6 10 383-392 6-15 (42)
7 2l8s_A Integrin alpha-1; trans 5.2 8.5E+02 0.029 18.0 4.2 30 266-295 2-31 (54)
8 2l2t_A Receptor tyrosine-prote 5.1 4.4E+02 0.015 18.7 2.5 13 615-627 28-40 (44)
9 3mp7_B Preprotein translocase 4.7 8.5E+02 0.029 18.4 4.1 37 619-656 17-53 (61)
10 2zt9_E Cytochrome B6-F complex 4.6 4.8E+02 0.017 17.1 2.2 19 44-62 9-27 (31)
No 1
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=30.16 E-value=4.1e+02 Score=26.17 Aligned_cols=16 Identities=25% Similarity=0.148 Sum_probs=10.1
Q ss_pred chHHHHHHHHHHHHHH
Q 005868 497 SAKSMFVSQLLGTAMG 512 (673)
Q Consensus 497 pPr~~f~~Q~iG~ivg 512 (673)
++...|..|+++|.+=
T Consensus 156 s~~~~f~~E~i~Tf~L 171 (256)
T 3llq_A 156 SLVSALLIEIILTAFF 171 (256)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3455677777777653
No 2
>1n0w_B Breast cancer type 2 susceptibility protein; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: j.97.1.1
Probab=13.37 E-value=68 Score=21.51 Aligned_cols=21 Identities=24% Similarity=0.550 Sum_probs=17.1
Q ss_pred CCcccccchhhHhhhhccchh
Q 005868 2 GTEVEVSEPLIEKIAAVNDEE 22 (673)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ 22 (673)
|.+|+.+++-||+...+=||+
T Consensus 13 GKkv~IakesL~Kvk~lF~E~ 33 (35)
T 1n0w_B 13 GKKVKIAKESLDKVKNLFDEK 33 (35)
T ss_dssp SCBCCCCHHHHHHTTTTTCCC
T ss_pred CcEEEehHHHHHHHHHHhhhc
Confidence 778999999998877766654
No 3
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=7.58 E-value=1e+02 Score=21.87 Aligned_cols=16 Identities=25% Similarity=0.526 Sum_probs=11.2
Q ss_pred cchhhHhhhhccchhh
Q 005868 8 SEPLIEKIAAVNDEEE 23 (673)
Q Consensus 8 ~~~~~~~~~~~~~~~~ 23 (673)
-|++||.||++=++.-
T Consensus 16 ~D~lLDeId~vLE~NA 31 (44)
T 3m91_B 16 TDDLLDEIDDVLEENA 31 (44)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhH
Confidence 3678888888765543
No 4
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=6.77 E-value=3.9e+02 Score=18.98 Aligned_cols=18 Identities=17% Similarity=0.217 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHhccc
Q 005868 610 DMFVGTVILFIWELVNRK 627 (673)
Q Consensus 610 ~~~~G~~i~~~~~r~~~~ 627 (673)
...++..+..++|||+.+
T Consensus 24 ~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 24 VVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHhheehhhhh
Confidence 345555666777777654
No 5
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=6.62 E-value=4.7e+02 Score=19.41 Aligned_cols=7 Identities=43% Similarity=1.398 Sum_probs=3.5
Q ss_pred CCchHHH
Q 005868 384 GIPTWFA 390 (673)
Q Consensus 384 ~vP~ww~ 390 (673)
++|.|.+
T Consensus 9 ~vp~wiI 15 (54)
T 2knc_A 9 AIPIWWV 15 (54)
T ss_dssp TCCHHHH
T ss_pred CcchHHH
Confidence 4555544
No 6
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=5.80 E-value=6.1e+02 Score=17.75 Aligned_cols=10 Identities=30% Similarity=0.896 Sum_probs=5.1
Q ss_pred CCCchHHHHH
Q 005868 383 DGIPTWFAAS 392 (673)
Q Consensus 383 ~~vP~ww~~~ 392 (673)
.++|.|.++.
T Consensus 6 ~~vp~wiIi~ 15 (42)
T 2k1a_A 6 RAIPIWWVLV 15 (42)
T ss_dssp CCCCHHHHHH
T ss_pred CCcchHHHHH
Confidence 3566655433
No 7
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=5.17 E-value=8.5e+02 Score=18.03 Aligned_cols=30 Identities=13% Similarity=-0.033 Sum_probs=20.8
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHh
Q 005868 266 GCGLICPHIVNCSVLLGAIISWGFLWPFIS 295 (673)
Q Consensus 266 G~gll~p~~~~~~~~~G~vl~~~il~P~l~ 295 (673)
|.|--+|+|..+-..+|+++-..++.-++|
T Consensus 2 ~~~~~vp~WiIi~svl~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 2 GLPGRVPLWVILLSAFAGLLLLMLLILALW 31 (54)
T ss_dssp CCCCCCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 566678888877777777666666665565
No 8
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=5.06 E-value=4.4e+02 Score=18.72 Aligned_cols=13 Identities=8% Similarity=-0.164 Sum_probs=6.8
Q ss_pred HHHHHHHHHhccc
Q 005868 615 TVILFIWELVNRK 627 (673)
Q Consensus 615 ~~i~~~~~r~~~~ 627 (673)
..+.+++|||+.+
T Consensus 28 ~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 28 LTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHTTCSS
T ss_pred HHHHHHhhhhhhh
Confidence 3344556666543
No 9
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=4.72 E-value=8.5e+02 Score=18.36 Aligned_cols=37 Identities=14% Similarity=0.069 Sum_probs=23.2
Q ss_pred HHHHHhccccccchhhhhhhhHHhhhHhHHHHHHHHHH
Q 005868 619 FIWELVNRKDSEDYAGAVASGLICGDGIWTIPSAILSI 656 (673)
Q Consensus 619 ~~~~r~~~~~~~~y~~~laaGL~aG~ai~gvi~a~l~~ 656 (673)
++++|-.+..+++|.-+ +-.-..|-.++|++-++.++
T Consensus 17 rvlk~~~KPd~~Ef~~i-ak~~~iG~~i~G~iGf~Ikl 53 (61)
T 3mp7_B 17 RAFLVTKKPNWATYKRA-AKITGLGIILIGLIGMLIRI 53 (61)
T ss_dssp HHHHHSCCCCTTHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 33555455567777553 44445688888888876554
No 10
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=4.64 E-value=4.8e+02 Score=17.12 Aligned_cols=19 Identities=5% Similarity=-0.269 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhhhccc
Q 005868 44 SAIMGTLFCIITHKLNLTV 62 (673)
Q Consensus 44 G~~l~~l~a~~n~~~~lr~ 62 (673)
+.+..+..-++..|||+|.
T Consensus 9 ~~l~~~~~iA~GL~fGLrs 27 (31)
T 2zt9_E 9 GFLALFTGIAAGLLFGLRS 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455556788999884
Done!