Query 005868
Match_columns 673
No_of_seqs 147 out of 1316
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 09:38:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005868.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005868hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90m_ f.23.25.1 (M:) PetM su 8.0 1.4E+02 0.01 17.9 2.6 16 638-653 2-17 (34)
2 d1q90l_ f.23.24.1 (L:) PetL su 4.6 2.6E+02 0.019 16.3 2.4 18 43-60 8-25 (32)
3 d1gvda_ a.4.1.3 (A:) c-Myb, DN 3.5 1.7E+02 0.012 19.5 1.0 19 92-110 1-19 (52)
4 d1zava1 d.58.62.1 (A:1-177) Ri 3.4 3.5E+02 0.025 22.5 3.4 28 490-517 128-155 (177)
5 d1rh2a_ a.26.1.3 (A:) Interfer 3.3 2.7E+02 0.02 23.0 2.6 34 11-44 86-120 (154)
6 d1x93a1 a.43.1.3 (A:31-73) Unc 3.1 1.6E+02 0.012 18.2 0.5 17 7-23 8-24 (43)
7 d2cuea1 a.4.1.1 (A:7-74) Paire 2.5 3.4E+02 0.024 18.9 1.8 19 8-31 9-27 (68)
8 d1jgga_ a.4.1.1 (A:) Even-skip 2.4 3.9E+02 0.028 17.8 2.0 20 7-31 6-25 (57)
9 d1zcea1 b.122.1.8 (A:2-147) Hy 2.3 2.5E+02 0.018 23.1 1.0 16 479-494 34-49 (146)
10 d1s7ea1 a.4.1.1 (A:103-152) He 2.1 4.7E+02 0.034 16.6 2.1 22 21-42 14-46 (50)
No 1
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=8.05 E-value=1.4e+02 Score=17.90 Aligned_cols=16 Identities=13% Similarity=0.337 Sum_probs=11.1
Q ss_pred hhHHhhhHhHHHHHHH
Q 005868 638 SGLICGDGIWTIPSAI 653 (673)
Q Consensus 638 aGL~aG~ai~gvi~a~ 653 (673)
+++++|.++.-+-+.+
T Consensus 2 a~fiagta~tmig~tl 17 (34)
T d1q90m_ 2 AEFIAGTALTMVGMTL 17 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CceecchhHHHHHHHH
Confidence 6788888876555543
No 2
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.60 E-value=2.6e+02 Score=16.31 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 005868 43 ASAIMGTLFCIITHKLNL 60 (673)
Q Consensus 43 lG~~l~~l~a~~n~~~~l 60 (673)
+|+++++++-..+.|+|+
T Consensus 8 vglligal~~tlgiylgl 25 (32)
T d1q90l_ 8 VGLLIGALVFTLGIYLGL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 477888888777888875
No 3
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.49 E-value=1.7e+02 Score=19.49 Aligned_cols=19 Identities=21% Similarity=0.357 Sum_probs=13.2
Q ss_pred CCCCCCCccchhhhhhhhh
Q 005868 92 FSIKPFTRQENTVIQTCVV 110 (673)
Q Consensus 92 lnpgpf~~kE~~iiq~~As 110 (673)
|+.||||..|-..+.-...
T Consensus 1 l~rg~WT~eED~~L~~~v~ 19 (52)
T d1gvda_ 1 LIKGPWTKEEDQRLIKLVQ 19 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 4678888888776655433
No 4
>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga maritima [TaxId: 2336]}
Probab=3.40 E-value=3.5e+02 Score=22.53 Aligned_cols=28 Identities=11% Similarity=0.120 Sum_probs=23.0
Q ss_pred hhhccCCchHHHHHHHHHHHHHHHHHHH
Q 005868 490 TGYLTLSSAKSMFVSQLLGTAMGCVIAP 517 (673)
Q Consensus 490 ~G~y~~~pPr~~f~~Q~iG~ivg~~v~~ 517 (673)
+-.+.+.|.|...++|++|.+-+...+.
T Consensus 128 i~~la~LPs~eel~a~l~~~L~ap~~~l 155 (177)
T d1zava1 128 VENIAKLPSKEELYAMLVGRVKAPITGL 155 (177)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhHHHHH
Confidence 4467889999999999999988766554
No 5
>d1rh2a_ a.26.1.3 (A:) Interferon-alpha 2b {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.34 E-value=2.7e+02 Score=23.01 Aligned_cols=34 Identities=12% Similarity=0.205 Sum_probs=23.9
Q ss_pred hhHhhhh-ccchhhhccCCCCCCCCcchHHHHHHH
Q 005868 11 LIEKIAA-VNDEEEEADQPIPEWKDQITIRGLVAS 44 (673)
Q Consensus 11 ~~~~~~~-~~~~~~~~~~~~~~~~~~lT~Ra~~lG 44 (673)
|+|+..+ +.+|+++++.|...+.+.+++|.++=+
T Consensus 86 Ql~~Le~Cl~~~~~~~~~~~~~e~~~L~lk~YF~r 120 (154)
T d1rh2a_ 86 QLNDLEACVIQGVGVTETPLMNEDSILAVRKYFQR 120 (154)
T ss_pred HHHHHHHHHHHhcccccCCcCCCcchHHHHHHHHH
Confidence 4555555 455666777777778888899998863
No 6
>d1x93a1 a.43.1.3 (A:31-73) Uncharacterized protein HP0222 {Helicobacter pylori [TaxId: 210]}
Probab=3.05 E-value=1.6e+02 Score=18.23 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=10.7
Q ss_pred ccchhhHhhhhccchhh
Q 005868 7 VSEPLIEKIAAVNDEEE 23 (673)
Q Consensus 7 ~~~~~~~~~~~~~~~~~ 23 (673)
.||+|-.+......|+|
T Consensus 8 fsdeqyqklekmaneee 24 (43)
T d1x93a1 8 FSDEQYQKLEKMANEEE 24 (43)
T ss_dssp ECHHHHHHHHHHHHHTT
T ss_pred ecHHHHHHHHHHhhhhH
Confidence 47787777666555544
No 7
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.49 E-value=3.4e+02 Score=18.92 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=12.5
Q ss_pred cchhhHhhhhccchhhhccCCCCC
Q 005868 8 SEPLIEKIAAVNDEEEEADQPIPE 31 (673)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~ 31 (673)
+++|++.. |+.|++.|||.
T Consensus 9 t~~Ql~~L-----e~~F~~n~yP~ 27 (68)
T d2cuea1 9 TQEQIEAL-----EKEFERTHYPD 27 (68)
T ss_dssp CHHHHHHH-----HHHHTTCSSCC
T ss_pred CHHHHHHH-----HHHHHHcCCCC
Confidence 55566322 66788888886
No 8
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=2.36 E-value=3.9e+02 Score=17.80 Aligned_cols=20 Identities=10% Similarity=0.144 Sum_probs=13.6
Q ss_pred ccchhhHhhhhccchhhhccCCCCC
Q 005868 7 VSEPLIEKIAAVNDEEEEADQPIPE 31 (673)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (673)
.+++|++.. |..++..|+|.
T Consensus 6 fT~~Ql~~L-----e~~F~~~~yp~ 25 (57)
T d1jgga_ 6 FTRDQLGRL-----EKEFYKENYVS 25 (57)
T ss_dssp CCHHHHHHH-----HHHHHHCSCCC
T ss_pred CCHHHHHHH-----HHHHHHCCCCC
Confidence 466777433 67778888875
No 9
>d1zcea1 b.122.1.8 (A:2-147) Hypothetical protein Atu2648 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=2.35 E-value=2.5e+02 Score=23.11 Aligned_cols=16 Identities=25% Similarity=0.198 Sum_probs=14.0
Q ss_pred HHHHHhhhhhhhhhcc
Q 005868 479 STAADLMQDFKTGYLT 494 (673)
Q Consensus 479 ~qa~~~~~DlK~G~y~ 494 (673)
.||-+++.|+|.|.++
T Consensus 34 yqArn~lr~Mk~GD~~ 49 (146)
T d1zcea1 34 YQARNNMRAMKIGDKG 49 (146)
T ss_dssp HHHHHHHHTCCTTCEE
T ss_pred HHHHHHHHhccCCCEE
Confidence 6899999999999874
No 10
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.14 E-value=4.7e+02 Score=16.64 Aligned_cols=22 Identities=9% Similarity=0.043 Sum_probs=0.0
Q ss_pred hhhhccCCCCC-----------CCCcchHHHHH
Q 005868 21 EEEEADQPIPE-----------WKDQITIRGLV 42 (673)
Q Consensus 21 ~~~~~~~~~~~-----------~~~~lT~Ra~~ 42 (673)
|+.++..|+|. .++.-.++.|+
T Consensus 14 e~~F~~n~~P~~~~~~~LA~~l~l~~~~V~~WF 46 (50)
T d1s7ea1 14 HAIFKENKRPSKELQITISQQLGLELSTVSNFF 46 (50)
T ss_dssp HHHTTSSCSSTHHHHHHHHTTSCSSSHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHCcCHHHhhhcC
Done!