Your job contains 1 sequence.
>005869
MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM
HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ
KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS
RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAH
ALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLSCISDN
IGNDLDFLAKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHLKNFKPESERKKLDLPVQK
NLLTKKFTTPRISPNHFSPEETSSLSPGEHHTAEASCDISCQSSSRMELETVGNFPHNSS
EKNCFASEVPEFSASPSREMENERNAEHTSLPQFCRSIRNPCPALRKEHENKNCTDSVVG
KGRTENRKVIVRSSYFLHKQVNKDDQENKQEKLVVENDAAIDMSENTGLQSAHFDYSYLK
GTAIKRKTSLIDSVHTDKMGSKLMRTNASLHNNGYSDPNLDKTIATETDEAKFGANISHL
GSYSEIAEKSMERFVSVISKYRCTSGSRASGLRAPLKDVRNTCTVRSPVAVDFSQFEYVP
KSRKSDLASRRL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005869
(672 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2013633 - symbol:AT1G29630 species:3702 "Arabi... 1586 1.3e-189 2
ZFIN|ZDB-GENE-040426-2828 - symbol:exo1 "exonuclease 1" s... 678 1.3e-72 3
TAIR|locus:2194085 - symbol:AT1G18090 species:3702 "Arabi... 725 1.1e-71 1
DICTYBASE|DDB_G0291570 - symbol:exo1 "5'3'-exonuclease N-... 685 4.5e-69 2
ASPGD|ASPL0000033989 - symbol:AN3035 species:162425 "Emer... 681 5.1e-67 1
UNIPROTKB|F1S8P2 - symbol:EXO1 "Uncharacterized protein" ... 658 1.1e-66 2
UNIPROTKB|Q9UQ84 - symbol:EXO1 "Exonuclease 1" species:96... 651 4.8e-66 2
UNIPROTKB|G4NE19 - symbol:MGG_00841 "Exonuclease 1" speci... 671 5.8e-66 1
RGD|1309465 - symbol:Exo1 "exonuclease 1" species:10116 "... 660 8.5e-65 1
UNIPROTKB|Q9W6K2 - symbol:exo1 "Exonuclease 1" species:83... 658 1.4e-64 1
MGI|MGI:1349427 - symbol:Exo1 "exonuclease 1" species:100... 655 2.9e-64 1
UNIPROTKB|E1C1G7 - symbol:EXO1 "Uncharacterized protein" ... 624 2.9e-64 2
UNIPROTKB|E2QWL7 - symbol:EXO1 "Uncharacterized protein" ... 644 4.2e-63 1
UNIPROTKB|E1BF15 - symbol:EXO1 "Uncharacterized protein" ... 640 1.1e-62 1
SGD|S000005559 - symbol:EXO1 "5'-3' exonuclease and flap-... 573 4.8e-60 2
POMBASE|SPBC29A10.05 - symbol:exo1 "exonuclease I Exo1" s... 597 4.0e-58 1
CGD|CAL0003631 - symbol:EXO1 species:5476 "Candida albica... 530 1.1e-54 2
FB|FBgn0015553 - symbol:tos "tosca" species:7227 "Drosoph... 553 1.9e-53 1
SGD|S000002671 - symbol:DIN7 "Mitochondrial nuclease func... 452 1.7e-42 1
WB|WBGene00009731 - symbol:exo-1 species:6239 "Caenorhabd... 407 1.5e-35 2
UNIPROTKB|Q5T397 - symbol:EXO1 "Exonuclease 1" species:96... 239 1.1e-34 2
UNIPROTKB|Q5T398 - symbol:EXO1 "Exonuclease 1" species:96... 220 1.2e-32 2
UNIPROTKB|Q5T399 - symbol:EXO1 "Exonuclease 1" species:96... 330 5.3e-29 1
GENEDB_PFALCIPARUM|PF07_0105 - symbol:PF07_0105 "exonucle... 275 5.1e-28 3
UNIPROTKB|Q8IBK1 - symbol:PF07_0105 "Exonuclease I, putat... 275 5.1e-28 3
FB|FBgn0025832 - symbol:Fen1 "Flap endonuclease 1" specie... 278 1.8e-22 1
DICTYBASE|DDB_G0284987 - symbol:repG "XPG" species:44689 ... 267 7.7e-21 1
UNIPROTKB|Q5ZLN4 - symbol:FEN1 "Flap endonuclease 1" spec... 263 2.3e-20 1
UNIPROTKB|J9PB88 - symbol:FEN1 "Flap endonuclease 1" spec... 258 9.8e-20 1
RGD|621821 - symbol:Fen1 "flap structure-specific endonuc... 258 9.8e-20 1
UNIPROTKB|Q58DH8 - symbol:FEN1 "Flap endonuclease 1" spec... 257 1.3e-19 1
UNIPROTKB|P39748 - symbol:FEN1 "Flap endonuclease 1" spec... 252 5.5e-19 1
UNIPROTKB|F1RKS3 - symbol:FEN1 "Flap endonuclease 1" spec... 251 7.2e-19 1
UNIPROTKB|P70040 - symbol:fen1-a "Flap endonuclease 1-A" ... 245 4.0e-18 1
MGI|MGI:102779 - symbol:Fen1 "flap structure specific end... 241 1.1e-17 1
UNIPROTKB|P70054 - symbol:fen1-b "Flap endonuclease 1-B" ... 237 3.6e-17 1
UNIPROTKB|A4QS18 - symbol:FEN1 "Flap endonuclease 1" spec... 232 1.6e-16 1
WB|WBGene00000794 - symbol:crn-1 species:6239 "Caenorhabd... 229 3.1e-16 1
GENEDB_PFALCIPARUM|PFD0420c - symbol:PFD0420c "flap exonu... 227 4.0e-16 2
UNIPROTKB|Q7K734 - symbol:FEN1 "Flap endonuclease 1" spec... 227 4.0e-16 2
ZFIN|ZDB-GENE-031112-11 - symbol:fen1 "flap structure-spe... 227 5.1e-16 1
TAIR|locus:2146824 - symbol:AT5G26680 species:3702 "Arabi... 227 1.0e-15 1
CGD|CAL0000208 - symbol:orf19.547 species:5476 "Candida a... 221 2.3e-15 1
CGD|CAL0003758 - symbol:RAD2 species:5476 "Candida albica... 165 2.6e-15 2
UNIPROTKB|Q59TL2 - symbol:RAD2 "Putative uncharacterized ... 165 2.6e-15 2
ASPGD|ASPL0000038590 - symbol:AN2764 species:162425 "Emer... 217 8.4e-15 1
POMBASE|SPAC3G6.06c - symbol:rad2 "FEN-1 endonuclease Rad... 207 9.9e-14 1
ASPGD|ASPL0000027656 - symbol:AN5216 species:162425 "Emer... 146 1.6e-13 2
SGD|S000001596 - symbol:RAD27 "5' to 3' exonuclease" spec... 199 8.1e-13 1
UNIPROTKB|E1BZY2 - symbol:ERCC5 "Uncharacterized protein"... 140 2.7e-12 2
UNIPROTKB|F1P266 - symbol:ERCC5 "Uncharacterized protein"... 140 3.5e-12 2
UNIPROTKB|E5RGY3 - symbol:EXO1 "Exonuclease 1" species:96... 172 5.8e-12 1
SGD|S000003490 - symbol:RAD2 "Single-stranded DNA endonuc... 138 9.7e-12 2
ZFIN|ZDB-GENE-050327-28 - symbol:ercc5 "excision repair c... 127 2.1e-11 2
POMBASE|SPBC3E7.08c - symbol:rad13 "DNA repair nuclease R... 125 2.6e-11 2
UNIPROTKB|Q3B7N6 - symbol:ERCC5 "Uncharacterized protein"... 130 7.8e-11 2
UNIPROTKB|P28715 - symbol:ERCC5 "DNA repair protein compl... 130 9.7e-11 2
TAIR|locus:2091343 - symbol:UVH3 "ULTRAVIOLET HYPERSENSIT... 157 2.4e-10 3
MGI|MGI:2443149 - symbol:Gen1 "Gen homolog 1, endonucleas... 181 4.1e-10 1
UNIPROTKB|J9P9A3 - symbol:BIVM "Uncharacterized protein" ... 130 7.9e-10 3
UNIPROTKB|E1B8D0 - symbol:GEN1 "Uncharacterized protein" ... 160 8.8e-10 3
UNIPROTKB|E1C3E4 - symbol:Gga.42587 "Uncharacterized prot... 164 9.6e-10 1
UNIPROTKB|F1SCS5 - symbol:GEN1 "Uncharacterized protein" ... 167 3.4e-09 2
WB|WBGene00019004 - symbol:xpg-1 species:6239 "Caenorhabd... 113 5.4e-09 2
RGD|1559792 - symbol:Gen1 "Gen endonuclease homolog 1 (Dr... 177 2.0e-08 2
GENEDB_PFALCIPARUM|PF10_0080 - symbol:PF10_0080 "endonucl... 156 5.3e-08 1
UNIPROTKB|Q8IJW1 - symbol:PF10_0080 "Endonuclease, putati... 156 5.3e-08 1
ZFIN|ZDB-GENE-050417-81 - symbol:zgc:110269 "zgc:110269" ... 155 5.3e-08 1
UNIPROTKB|Q17RS7 - symbol:GEN1 "Flap endonuclease GEN hom... 163 7.6e-08 2
UNIPROTKB|E2QU72 - symbol:GEN1 "Uncharacterized protein" ... 162 9.7e-08 2
UNIPROTKB|E1C986 - symbol:Gga.42587 "Uncharacterized prot... 137 1.3e-07 1
DICTYBASE|DDB_G0281151 - symbol:DDB_G0281151 "DNA repair ... 155 2.1e-07 1
GENEDB_PFALCIPARUM|PFB0265c - symbol:PFB0265c "DNA repair... 132 3.6e-07 3
UNIPROTKB|O96154 - symbol:PFB0265c "DNA repair endonuclea... 132 3.6e-07 3
UNIPROTKB|Q64MA3 - symbol:RAD "Flap endonuclease GEN-like... 148 9.2e-07 1
UNIPROTKB|I3L3E9 - symbol:FEN1 "Flap endonuclease 1" spec... 117 4.5e-06 1
FB|FBgn0002887 - symbol:mus201 "mutagen-sensitive 201" sp... 145 5.3e-06 2
UNIPROTKB|E1BC95 - symbol:ERCC5 "Uncharacterized protein"... 130 8.2e-06 2
TAIR|locus:2065294 - symbol:AT2G02550 species:3702 "Arabi... 125 1.9e-05 1
UNIPROTKB|F1P953 - symbol:BIVM "Uncharacterized protein" ... 130 2.1e-05 3
UNIPROTKB|I3LHP7 - symbol:I3LHP7 "Uncharacterized protein... 115 2.2e-05 1
UNIPROTKB|F5H1Y3 - symbol:FEN1 "Flap endonuclease 1" spec... 115 6.7e-05 1
UNIPROTKB|I3LQY2 - symbol:ERCC5 "Uncharacterized protein"... 134 9.4e-05 1
CGD|CAL0003493 - symbol:orf19.2664 species:5476 "Candida ... 130 0.00013 1
CGD|CAL0001028 - symbol:orf19.652 species:5476 "Candida a... 110 0.00015 2
UNIPROTKB|E1BWF2 - symbol:Gga.42587 "Uncharacterized prot... 132 0.00020 2
RGD|1586176 - symbol:Ercc5 "excision repair cross-complem... 120 0.00031 2
UNIPROTKB|Q9HD60 - symbol:ERCC5 "DNA repair protein-compl... 111 0.00068 2
>TAIR|locus:2013633 [details] [associations]
symbol:AT1G29630 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=IEA;ISS] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0007062 "sister chromatid
cohesion" evidence=RCA] [GO:0031048 "chromatin silencing by small
RNA" evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0004527
GO:GO:0090305 GO:GO:0004519 EMBL:AC068667 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 EMBL:AY140055 IPI:IPI00532766
IPI:IPI00852240 PIR:E86419 RefSeq:NP_001077624.1 RefSeq:NP_174256.2
UniGene:At.40698 HSSP:P39748 ProteinModelPortal:Q8L6Z7 SMR:Q8L6Z7
PRIDE:Q8L6Z7 EnsemblPlants:AT1G29630.2 GeneID:839840
KEGG:ath:AT1G29630 TAIR:At1g29630 HOGENOM:HOG000064704
InParanoid:Q8L6Z7 KO:K10746 OMA:LEHEANG PhylomeDB:Q8L6Z7
ProtClustDB:CLSN2699050 Genevestigator:Q8L6Z7 Uniprot:Q8L6Z7
Length = 735
Score = 1586 (563.4 bits), Expect = 1.3e-189, Sum P(2) = 1.3e-189
Identities = 332/512 (64%), Positives = 377/512 (73%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGIQGLLPLLKSIM+PIHIKELEGC VAVDTYSWLHKGALSCSRELCKGLPT RHI YCM
Sbjct: 1 MGIQGLLPLLKSIMVPIHIKELEGCIVAVDTYSWLHKGALSCSRELCKGLPTKRHIQYCM 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
HRVNLLRH+GVKPI++FDGG LPMK+EQENKRARSRKENLARA+E E+ GNSSA+YE Y
Sbjct: 61 HRVNLLRHHGVKPIMVFDGGPLPMKLEQENKRARSRKENLARALEHEANGNSSAAYECYS 120
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
KAVDISPSIAHELIQVL+Q+NV Y+VAPYEADAQM FLA++KQV+A+ITEDSDLIPFGC
Sbjct: 121 KAVDISPSIAHELIQVLRQENVDYVVAPYEADAQMAFLAITKQVDAIITEDSDLIPFGCL 180
Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAH 240
RIIFKMDKFG GVEFQ S L KNKDLS GF+ QMLLEMCILSGCDYLQSLPGMGLKRAH
Sbjct: 181 RIIFKMDKFGHGVEFQASKLPKNKDLSLSGFSSQMLLEMCILSGCDYLQSLPGMGLKRAH 240
Query: 241 ALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLSCISDN 300
ALI+KFKSYD+VIKHLKYSTVSVPP YEESF +A+LTF+HQRVYDP EDI+HL ISDN
Sbjct: 241 ALITKFKSYDRVIKHLKYSTVSVPPLYEESFKRALLTFKHQRVYDPNAEDIIHLCDISDN 300
Query: 301 IGNDLDF--------LAKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHLKNFKPESERK 352
+G D DF +AKGIA+G LDPFTQLPFQ S L V S K+FKPE+ +K
Sbjct: 301 LGEDSDFVGPSMPQDIAKGIALGQLDPFTQLPFQAESVTPKLAVDDISRPKSFKPETVKK 360
Query: 353 KLDLPVQKNLLTKKFTTPRISPNH-FSPEETSSLSPGEHHTAEASCDISCQSSSRMELET 411
KLDLPVQKNLLTK F + F S +S + + D + + +T
Sbjct: 361 KLDLPVQKNLLTKYFCFASVEAKRKFKAPRISPMSLTPTDESPSIPDDNTPDLDALSSQT 420
Query: 412 VGNFPHNSSEKNCFASEVPEFSASPSREMENERNAEHTSLPQFCRSIRNPCPALRKEHEN 471
P S +N SEV E SP + ERN H L H +
Sbjct: 421 TNESPVYSLGENPCVSEVAEKRDSPDDDAV-ERN--HKDL-----------------H-H 459
Query: 472 KNCTDSVVGKGRTENRKVIVRSSYFLHKQVNK 503
K C + V + ++++ KVIVRS YF KQ +K
Sbjct: 460 KYC-EREVDRPKSDSLKVIVRSKYFKQKQEDK 490
Score = 274 (101.5 bits), Expect = 1.3e-189, Sum P(2) = 1.3e-189
Identities = 75/179 (41%), Positives = 101/179 (56%)
Query: 498 HKQVNKDDQENKQEKLVVENDAAIDMSENT-GLQSAHFDYSYLKGTAIKRKTSLIDSVHT 556
HK +N E +Q V E +A EN L S D + T KRK +++H
Sbjct: 567 HK-INHQINEEEQNPSV-EIPSAFSTPENVIPLSSIAIDSCHGVATG-KRKLDSDENLHK 623
Query: 557 DKMGSKLMRTNASLHNNGYSDPNLDKTIATETDEA-KFGANISHLGSYSEIAEKSMERFV 615
+ + SK MR + + D L+ ETD+ KFG+NISH+G YSEIAEKS+ERFV
Sbjct: 624 ENLKSKHMRMDET-------DTALNAETPLETDDVEKFGSNISHIGHYSEIAEKSVERFV 676
Query: 616 SVISKYRCT-SGSRASGLRAPLKDVRNTCTVRS-PVAVDFSQFEYVPKSRKSDLASRRL 672
S IS ++ + +GSRASGLRAPLKD+RNTC + + D S+F Y +R SRR+
Sbjct: 677 SAISSFKYSGTGSRASGLRAPLKDIRNTCPSKGLSLKPDISKFGYASSNRHMVTKSRRM 735
Score = 54 (24.1 bits), Expect = 2.4e-166, Sum P(2) = 2.4e-166
Identities = 32/160 (20%), Positives = 57/160 (35%)
Query: 443 ERNAEHTSLPQFCRSIRNPCPALRKEHENKNCTDSVVGKGRTENRKVIVRSSYFLHKQVN 502
++ E SL Q + N C + + K + R E+ + I S H ++
Sbjct: 484 KQKQEDKSLKQSIPCL-NDCSVIGQRKAVKTVINMSSASKREESHRAIATSPCLHHDRIY 542
Query: 503 KDDQENKQEKLVVENDAA--------IDMSENTGLQSAHFDYSYLKGT---AIKRKTSLI 551
D ++ K+ N+ A I+ N Q+ + T I + I
Sbjct: 543 NDHEDAKEASFSAMNEVAERTINTHKINHQINEEEQNPSVEIPSAFSTPENVIPLSSIAI 602
Query: 552 DSVHTDKMGSKLMRTNASLHNNGYSDPNLDKTIATETDEA 591
DS H G + + ++ +LH ++ ETD A
Sbjct: 603 DSCHGVATGKRKLDSDENLHKENLKSKHMRMD---ETDTA 639
>ZFIN|ZDB-GENE-040426-2828 [details] [associations]
symbol:exo1 "exonuclease 1" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0016788
"hydrolase activity, acting on ester bonds" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0006298 "mismatch
repair" evidence=ISS] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0048256 "flap endonuclease
activity" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019734 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
ZFIN:ZDB-GENE-040426-2828 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006298 GO:GO:0006310 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 EMBL:BC044187 IPI:IPI00614375
RefSeq:NP_998634.1 UniGene:Dr.17858 ProteinModelPortal:Q803U7
STRING:Q803U7 PRIDE:Q803U7 GeneID:406778 KEGG:dre:406778 CTD:9156
HOGENOM:HOG000112413 HOVERGEN:HBG081488 InParanoid:Q803U7
OrthoDB:EOG4M91QT NextBio:20818292 ArrayExpress:Q803U7
GO:GO:0048256 GO:GO:0045145 Uniprot:Q803U7
Length = 806
Score = 678 (243.7 bits), Expect = 1.3e-72, Sum P(3) = 1.3e-72
Identities = 148/321 (46%), Positives = 201/321 (62%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGIQGLL +K P+H+K+ G VAVDTY WLHKGA SC+ +L KG PT +++ YCM
Sbjct: 1 MGIQGLLQFIKDASEPMHVKKYRGQTVAVDTYCWLHKGAFSCAEKLAKGEPTDQYVSYCM 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
V++L +GVKPIL+FDG LP K E E R R+ NL + + EG + + E +
Sbjct: 61 KFVDMLLSFGVKPILVFDGRNLPSKQEVEKSRRERRQANLQKGKQLLREGKITEARECFT 120
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
++V+I+PS+AH++I+ + + V +VAPYEADAQ+ FL S +AVITEDSDL+ FGC
Sbjct: 121 RSVNITPSMAHDVIRAARTRGVDCVVAPYEADAQLAFLNKSDIAQAVITEDSDLLAFGCK 180
Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAH 240
++I KMDK G G+E + L + K L FT++ MCILSGCDYLQSL G+GL +A
Sbjct: 181 KVILKMDKQGNGLEIEQCHLGRCKSLG-NIFTEEKFRYMCILSGCDYLQSLYGIGLGKAC 239
Query: 241 ALISKFKSYD--KVIKHL-KY--STVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLS 295
L+ + D KVIK + +Y +SVP Y E F KA TF +Q V+DP +V L+
Sbjct: 240 KLLRMANNPDILKVIKKMGQYLKMDISVPEEYIEGFTKANNTFLYQLVFDPLRRKVVPLN 299
Query: 296 CISDNIGNDLDFLAKGIAIGD 316
D+I N G +GD
Sbjct: 300 PYPDHI-NPAALSYAGTNVGD 319
Score = 49 (22.3 bits), Expect = 1.3e-72, Sum P(3) = 1.3e-72
Identities = 29/112 (25%), Positives = 43/112 (38%)
Query: 337 GQNSHLKNFKPESERKKLDLPVQKNLLTKKFTTPR-ISPNHFS-PEETSSLSPGEHHTAE 394
G S L +PE E+ K D P + P + FS T L+ H A
Sbjct: 537 GDTSSLCE-EPEREQDK-DEPSSPPASPSCSSRPASVGLGVFSWSGTTKELNKSVSHPAR 594
Query: 395 ASCDISCQSSSRMELETVGNFPHNSSEKNCFASEVPEFSASPSREMENERNA 446
S + SS+ L T+ F H + + +A S+SP E+ N+
Sbjct: 595 DSTERQRSSSTPSGLSTLQQF-HRNKARISWAGPGLSLSSSPVEGSEDAGNS 645
Score = 40 (19.1 bits), Expect = 1.1e-71, Sum P(3) = 1.1e-71
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 436 PSREMENERNAEHTSLP------QFCRSIRNPCP 463
P RE + +R E TSL Q+ ++ CP
Sbjct: 412 PQRESQVKRPREDTSLSVDDLLEQYTAGVKRHCP 445
Score = 38 (18.4 bits), Expect = 1.3e-72, Sum P(3) = 1.3e-72
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 620 KYRCTSGSRASGLRAPLKDVRNTCTVRSP 648
K ++ +RASGLR +N SP
Sbjct: 724 KIETSAPARASGLRRKPSGKKNVNNENSP 752
>TAIR|locus:2194085 [details] [associations]
symbol:AT1G18090 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=IEA;ISS] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0004527 GO:GO:0090305
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10746
UniGene:At.48205 UniGene:At.70260 EMBL:AY050420 EMBL:AY113038
IPI:IPI00541706 RefSeq:NP_564047.1 ProteinModelPortal:Q94A33
SMR:Q94A33 PaxDb:Q94A33 PRIDE:Q94A33 EnsemblPlants:AT1G18090.1
GeneID:838389 KEGG:ath:AT1G18090 TAIR:At1g18090
HOGENOM:HOG000131774 InParanoid:Q94A33 OMA:ETFETTE
ProtClustDB:CLSN2687850 Genevestigator:Q94A33 Uniprot:Q94A33
Length = 577
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 152/328 (46%), Positives = 213/328 (64%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELC---KGLPTSRHID 57
MGI+ LL +K ++PIHI++ G V +D YSWLHKGA SCS ELC G R+ID
Sbjct: 1 MGIKDLLRFMKPYILPIHIQKYAGKRVGIDAYSWLHKGAYSCSMELCLDTDGKKKLRYID 60
Query: 58 YCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYE 117
Y MHRVNLL+HY + P+++ DGG +P K ++R R RK N A+ EGN +A+ E
Sbjct: 61 YFMHRVNLLQHYEIIPVVVLDGGNMPCKAATGDERHRKRKANFDAAMVKLKEGNVAAATE 120
Query: 118 FYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVE-----AVITEDS 172
+Q+AV ++ S+AH+LIQVLK +NV +IVAPYEADAQ+ +L+ S ++E AVITEDS
Sbjct: 121 LFQRAVSVTSSMAHQLIQVLKSENVEFIVAPYEADAQLAYLS-SLELEQGGIAAVITEDS 179
Query: 173 DLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDL--SFGGFTKQMLLEMCILSGCDYLQS 230
DL+ +GC +IFKMD++G+G E + + D SF F +++ MC+L+GCD+L S
Sbjct: 180 DLLAYGCKAVIFKMDRYGKGEELVLDNVFQAVDQKPSFQNFDQELFTAMCVLAGCDFLPS 239
Query: 231 LPGMGLKRAHALISKFKSYDKVIKHLKYSTVS-VPPFYEESFGKAVLTFQHQRVYDPKTE 289
+PG+G+ RAHA ISK++S + V+ LK VP Y SF +AV FQH RVYD +
Sbjct: 240 VPGVGISRAHAFISKYQSVELVLSFLKTKKGKLVPDDYSSSFTEAVSVFQHARVYDFDAK 299
Query: 290 DIVHLSCISDNIGN----DLDFLAKGIA 313
+ HL +S N+ N L+FL ++
Sbjct: 300 KLKHLKPLSHNLLNLPVEQLEFLGPDLS 327
Score = 332 (121.9 bits), Expect = 4.1e-27, P = 4.1e-27
Identities = 76/181 (41%), Positives = 106/181 (58%)
Query: 164 VEAVITEDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDL--SFGGFTKQMLLEMCI 221
+ AVITEDSDL+ +GC +IFKMD++G+G E + + D SF F +++ MC+
Sbjct: 171 IAAVITEDSDLLAYGCKAVIFKMDRYGKGEELVLDNVFQAVDQKPSFQNFDQELFTAMCV 230
Query: 222 LSGCDYLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVS-VPPFYEESFGKAVLTFQH 280
L+GCD+L S+PG+G+ RAHA ISK++S + V+ LK VP Y SF +AV FQH
Sbjct: 231 LAGCDFLPSVPGVGISRAHAFISKYQSVELVLSFLKTKKGKLVPDDYSSSFTEAVSVFQH 290
Query: 281 QRVYDPKTEDIVHLSCISDNIGN----DLDFL--------AKGIAIGDLDPFTQLPFQEV 328
RVYD + + HL +S N+ N L+FL A IA G++DP T F
Sbjct: 291 ARVYDFDAKKLKHLKPLSHNLLNLPVEQLEFLGPDLSPSVAVAIAEGNVDPITMKAFNHF 350
Query: 329 S 329
S
Sbjct: 351 S 351
>DICTYBASE|DDB_G0291570 [details] [associations]
symbol:exo1 "5'3'-exonuclease N- and
I-domain-containing protein" species:44689 "Dictyostelium
discoideum" [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019734 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 dictyBase:DDB_G0291570 GO:GO:0005634
EMBL:AAFI02000177 GenomeReviews:CM000155_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 GO:GO:0006310 GO:GO:0004519
GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 RefSeq:XP_635308.1 ProteinModelPortal:Q54ED2
EnsemblProtists:DDB0232997 GeneID:8628252 KEGG:ddi:DDB_G0291570
OMA:KSQANIC Uniprot:Q54ED2
Length = 1046
Score = 685 (246.2 bits), Expect = 4.5e-69, Sum P(2) = 4.5e-69
Identities = 142/288 (49%), Positives = 190/288 (65%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGI GLLP L + IH+K+ VA+D YSWLHKGA SCS+E+ G+PT +I+Y +
Sbjct: 1 MGISGLLPALSPVTKAIHVKDYANKRVAIDGYSWLHKGAYSCSQEIVLGIPTRNYINYFI 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
R+ +L Y V P++IFDGG LP K +E +R R R+E +A EGN S + +Q
Sbjct: 61 SRIKMLISYKVIPVVIFDGGPLPNKKLKEQERLRHREEYKNKAKAYLLEGNKSQANICFQ 120
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
KAVDI+P +A LI+ L+ V Y+VAPYEADAQ+T+L+++ QV+A+ITEDSDL+ FG +
Sbjct: 121 KAVDITPRMAFLLIKELRALKVEYLVAPYEADAQLTYLSITGQVDAIITEDSDLVAFGAT 180
Query: 181 RIIFKMDKFGQGVEFQCSMLQK-NKD-LSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKR 238
IIFKMDK+G E + L KD F F + ML +MCILSGCDYL SL GMGLK
Sbjct: 181 HIIFKMDKYGYAQEIKTEDLGSCKKDGYDFIDFNQTMLRQMCILSGCDYLPSLSGMGLKT 240
Query: 239 AHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDP 286
+ L+ + + +KV K+LK + YE+ F KA TF+HQRV+DP
Sbjct: 241 SFKLLKQHRDIEKVFKYLKREKSNFSQEYEQQFYKADFTFKHQRVFDP 288
Score = 44 (20.5 bits), Expect = 4.5e-69, Sum P(2) = 4.5e-69
Identities = 24/71 (33%), Positives = 34/71 (47%)
Query: 299 DNIGNDLDF-LAKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHLKN-FKPESERKKLDL 356
D IG +D +A+ IA+G +DP T F + + KN F P+ KKL
Sbjct: 337 DFIGPVIDDEIAEKIALGIIDPETHEQFDKTQP----------YPKNTFTPQP--KKLLS 384
Query: 357 PVQKNLLTKKF 367
P+ N TK+F
Sbjct: 385 PISFN--TKEF 393
>ASPGD|ASPL0000033989 [details] [associations]
symbol:AN3035 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0003677 GO:GO:0006281
EMBL:BN001306 EMBL:AACD01000051 GO:GO:0004527 GO:GO:0090305
GO:GO:0004519 eggNOG:COG0258 OrthoDB:EOG44QX8J PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 RefSeq:XP_660639.1
ProteinModelPortal:Q5B8U5 STRING:Q5B8U5
EnsemblFungi:CADANIAT00010044 GeneID:2874467 KEGG:ani:AN3035.2
HOGENOM:HOG000196065 OMA:KTAYRSI Uniprot:Q5B8U5
Length = 761
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 192/649 (29%), Positives = 311/649 (47%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGI+GL LLKSI P H+K+ G + VD Y WLH+G ++C+ +L PT++HID+ +
Sbjct: 1 MGIKGLHGLLKSIQKPCHLKKFSGQTLGVDAYGWLHRGTVACAVDLVLDRPTTKHIDFVL 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
RV +L +GVKP L+FDG LP K E R + R E+ +E +G ++ +Y+ Q
Sbjct: 61 SRVRMLLFFGVKPYLVFDGDNLPSKSGTELDRQQRRHESKTLGMELYRKGRTAEAYQELQ 120
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
KAVD++P +A +LI+ LK+ ++ Y+VAPYEADAQ+ +L ++ +I+EDSDL+ FG
Sbjct: 121 KAVDVTPLMARQLIEELKKLDIQYVVAPYEADAQLVYLEKHGFIDGIISEDSDLLVFGAK 180
Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAH 240
R++ K+D+ G+ +E + +++SF G+T MCI+SGCDYL ++ +GLK A+
Sbjct: 181 RLLSKLDQHGELIEINRADFTACREVSFVGWTDADFRRMCIMSGCDYLPNIARVGLKTAY 240
Query: 241 ALISKFKSYDKVIKHLKYS-TVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLSCISD 299
I K+KS +K ++ L++ VP Y +SF +A LTF +QRV+ PK+ +V L+ D
Sbjct: 241 RSIRKYKSVEKALRMLQFEGPYHVPADYLQSFMQAELTFLYQRVFCPKSGKLVPLTSPDD 300
Query: 300 N--------IGNDLD-FLAKGIAIGDLDPFTQLPFQEV-SDNSHLVVGQNSHLKNF-KPE 348
IG D+D A G+A GDLDP ++ P Q V V QN H+ + + +
Sbjct: 301 GVNLDELPFIGADMDPETAVGVANGDLDPTSKKPLQLVIKPLGSSTVEQNKHIASLSRRQ 360
Query: 349 SERKKLDL----PVQKNLLTKKFTTPRISPNHFSPEETSSLSPGEHHTAEASCDISCQSS 404
+ D+ P+ K+ + PN +P + H + ++
Sbjct: 361 TIGSFSDIKPSKPINSFFTPKRVPLAELDPNSLTPSPSQQRLLHRHVNSSWEPSLAPSRP 420
Query: 405 SRMELETVGNFPHNSSEKNCFASEVPEFSASPSREMENERNAEHTSLPQFCRSIRNPCPA 464
S TV + S ++E F A S+ + + + I P
Sbjct: 421 SVARSTTVNDSSSRLSSPLVRSAERSLFLARTSKLTTLQPSKRQRLCSETDEVIAASTPD 480
Query: 465 LRKEHENKNCTDSVVGKGRTENRKVIVRSSYFLHKQVNKDDQENKQEKLVVENDAAIDMS 524
R + D G+ NR R S V DD E ++ + D S
Sbjct: 481 CRSRFFAASSNDETPSGGQKLNRSKKARKSTL---DVFSDDAT---EDIMSQMP---DPS 531
Query: 525 ENTGLQSAHFDYSYLKGTAIKRKTSLIDSVHTDKMGSKLMRTNASLHNNGYSDPNLDKTI 584
E + + F + G + +R+ + + S+ T Y +T+
Sbjct: 532 EAANMTNEKFSAAGHSGESSEREDEVTKTNVPITTRSETEATQLDAKKQAYEAAFDSRTL 591
Query: 585 ATETDEAKFGANISHLGSYSEIAEKSMERFVSVISKYRCTSGSRASGLR 633
+ + A S ++ + ++R S +SKY + ASG R
Sbjct: 592 SRKISAA------SEPQVVPQVTDHHIKRQTSTLSKYSFKTD--ASGTR 632
>UNIPROTKB|F1S8P2 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298
GO:GO:0090305 GO:GO:0045190 GeneTree:ENSGT00510000047676
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0016446 KO:K10746 CTD:9156
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:FP236465 EMBL:FP236767 RefSeq:XP_003130603.3
Ensembl:ENSSSCT00000011887 GeneID:100512301 KEGG:ssc:100512301
Uniprot:F1S8P2
Length = 836
Score = 658 (236.7 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
Identities = 147/371 (39%), Positives = 224/371 (60%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGIQGLL +K P+H+++ +G VAVDTY WLHKGA++C+ +L KG PT +++ +CM
Sbjct: 1 MGIQGLLQFIKEASEPVHVRKYKGQVVAVDTYCWLHKGAVACAEKLAKGEPTDKYVGFCM 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
VN+L +G+KPIL+FDG LP K E E R R+ NL + + EG S + E +
Sbjct: 61 KFVNMLLSHGIKPILVFDGCTLPSKKEVEKSRRERRQANLLKGKQLLREGKVSEARECFT 120
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
++++I+ ++AH +I+ + Q V +VAPYEADAQ+ +L + V+A+ITEDSDL+ FGC
Sbjct: 121 RSINITHAMAHSVIKAARAQGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFGCK 180
Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAH 240
++I KMD+FG G+E + L K K L FT++ MCILSGCDYL SL G+GL +A
Sbjct: 181 KVILKMDQFGNGLEVDQARLGKCKQLG-DVFTEEKFRYMCILSGCDYLSSLRGIGLAKAC 239
Query: 241 ALISKFKSYD--KVIK---HLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLS 295
++ + D KVIK H ++VP Y E F +A TF +Q V+DP ++ L+
Sbjct: 240 KVLRLANNPDIVKVIKKIGHYLKMNITVPEDYIEGFIRANNTFLYQLVFDPINRKLIPLN 299
Query: 296 CISDNI--------GNDLD-FLAKGIAIGDLDPFTQLPFQEVSD-NSHLVVGQNSHLKNF 345
D+I G +D +A IA+G+ D T +++ D N V+ S +++
Sbjct: 300 AYEDDIDPATLSYAGRYIDDSVALQIALGNKDINT---LEQIDDYNPDTVMPAQSRSRSW 356
Query: 346 KPESERKKLDL 356
++ +K ++
Sbjct: 357 NDKTCQKSSNI 367
Score = 38 (18.4 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 318 DPFTQLPFQ-EVSDNSHLVV---GQNSHLKNFKP-ESERKKLDLPVQKNLLTKKFTTP 370
D LP EVSD S L G SHL + + S+ +++ NL K + P
Sbjct: 626 DSAVSLPENSEVSDASQLKSEESGDESHLSHEEAWSSQSQEIVESSPHNLNASKLSQP 683
>UNIPROTKB|Q9UQ84 [details] [associations]
symbol:EXO1 "Exonuclease 1" species:9606 "Homo sapiens"
[GO:0007126 "meiosis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0002455 "humoral immune response mediated by
circulating immunoglobulin" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0051908 "double-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IDA] [GO:0035312
"5'-3' exodeoxyribonuclease activity" evidence=IDA] [GO:0045145
"single-stranded DNA specific 5'-3' exodeoxyribonuclease activity"
evidence=IDA] [GO:0048256 "flap endonuclease activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006298 "mismatch repair" evidence=ISS;IDA;IMP;IPI] [GO:0008409
"5'-3' exonuclease activity" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0004527 "exonuclease
activity" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0004523 "ribonuclease H activity" evidence=TAS]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
EMBL:AF042282 GO:GO:0005634 GO:GO:0007126 GO:GO:0002455
GO:GO:0046872 GO:GO:0003677 GO:GO:0006298 GO:GO:0006310
GO:GO:0045190 GO:GO:0004523 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0016446 BRENDA:3.1.11.1 KO:K10746 CTD:9156
HOVERGEN:HBG081488 OrthoDB:EOG4M91QT GO:GO:0048256 GO:GO:0045145
GO:GO:0051908 EMBL:AF084974 EMBL:AF091740 EMBL:AF091754
EMBL:AF091742 EMBL:AF091743 EMBL:AF091744 EMBL:AF091745
EMBL:AF091746 EMBL:AF091747 EMBL:AF091748 EMBL:AF091749
EMBL:AF091750 EMBL:AF091751 EMBL:AF091752 EMBL:AF091753
EMBL:AC004783 EMBL:AF060479 EMBL:AF549168 EMBL:AL365366
EMBL:BC007491 EMBL:AL080139 IPI:IPI00219173 IPI:IPI00556476
PIR:T12524 RefSeq:NP_003677.4 RefSeq:NP_006018.4 RefSeq:NP_569082.2
UniGene:Hs.498248 PDB:3QE9 PDB:3QEA PDB:3QEB PDBsum:3QE9
PDBsum:3QEA PDBsum:3QEB ProteinModelPortal:Q9UQ84 SMR:Q9UQ84
IntAct:Q9UQ84 STRING:Q9UQ84 PhosphoSite:Q9UQ84 DMDM:85700954
PaxDb:Q9UQ84 PRIDE:Q9UQ84 DNASU:9156 Ensembl:ENST00000348581
Ensembl:ENST00000366548 Ensembl:ENST00000518483 GeneID:9156
KEGG:hsa:9156 UCSC:uc001hzh.3 UCSC:uc021plk.1 GeneCards:GC01P242011
H-InvDB:HIX0022634 HGNC:HGNC:3511 MIM:606063 neXtProt:NX_Q9UQ84
PharmGKB:PA27923 InParanoid:Q9UQ84 OMA:EPIHVRK PhylomeDB:Q9UQ84
EvolutionaryTrace:Q9UQ84 GenomeRNAi:9156 NextBio:34349
ArrayExpress:Q9UQ84 Bgee:Q9UQ84 CleanEx:HS_EXO1
Genevestigator:Q9UQ84 GermOnline:ENSG00000174371 GO:GO:0043566
Uniprot:Q9UQ84
Length = 846
Score = 651 (234.2 bits), Expect = 4.8e-66, Sum P(2) = 4.8e-66
Identities = 141/344 (40%), Positives = 210/344 (61%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGIQGLL +K PIH+++ +G VAVDTY WLHKGA++C+ +L KG PT R++ +CM
Sbjct: 1 MGIQGLLQFIKEASEPIHVRKYKGQVVAVDTYCWLHKGAIACAEKLAKGEPTDRYVGFCM 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
VN+L +G+KPIL+FDG LP K E E R R+ NL + + EG S + E +
Sbjct: 61 KFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECFT 120
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
++++I+ ++AH++I+ + Q V +VAPYEADAQ+ +L + V+A+ITEDSDL+ FGC
Sbjct: 121 RSINITHAMAHKVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFGCK 180
Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAH 240
++I KMD+FG G+E + L + L FT++ MCILSGCDYL SL G+GL +A
Sbjct: 181 KVILKMDQFGNGLEIDQARLGMCRQLG-DVFTEEKFRYMCILSGCDYLSSLRGIGLAKAC 239
Query: 241 ALISKFKSYD--KVIK---HLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLS 295
++ + D KVIK H ++VP Y F +A TF +Q V+DP ++ L+
Sbjct: 240 KVLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIRANNTFLYQLVFDPIKRKLIPLN 299
Query: 296 CISDNIGNDL---------DFLAKGIAIGDLDPFTQLPFQEVSD 330
D++ + D +A IA+G+ D T F+++ D
Sbjct: 300 AYEDDVDPETLSYAGQYVDDSIALQIALGNKDINT---FEQIDD 340
Score = 39 (18.8 bits), Expect = 4.8e-66, Sum P(2) = 4.8e-66
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 393 AEASCDISCQSSSRMELETVGNFPHNSSEKNC 424
++ S + S QSS+ +L + +S E +C
Sbjct: 676 SQESGEFSLQSSNASKLSQCSSKDSDSEESDC 707
>UNIPROTKB|G4NE19 [details] [associations]
symbol:MGG_00841 "Exonuclease 1" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 EMBL:CM001235 GO:GO:0003677
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 RefSeq:XP_003718138.1
ProteinModelPortal:G4NE19 EnsemblFungi:MGG_00841T0 GeneID:2674671
KEGG:mgr:MGG_00841 Uniprot:G4NE19
Length = 780
Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
Identities = 137/332 (41%), Positives = 210/332 (63%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGI GLLPLLKSI P +K+ G +AVD Y WLH+GA+SC+ EL +G PT +++D+ M
Sbjct: 1 MGIVGLLPLLKSIQRPTELKKFAGETLAVDAYGWLHRGAVSCALELAQGKPTRKYVDFAM 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
HRV +++++G P ++FDG LP K E RA+ R+E+ +E G + +Y+ +Q
Sbjct: 61 HRVRMVKYFGATPYIVFDGDFLPSKALTEASRAKRREESKKAGMELLKAGKPAQAYQEFQ 120
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
KA+D++P +A ELI+ LK+ +V Y+VAPYEADAQM +L + V +I+EDSDL+ FG
Sbjct: 121 KAIDVTPEMARELIEELKKIDVPYVVAPYEADAQMVYLERNGYVSGIISEDSDLLVFGAK 180
Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAH 240
R++ K+D+ GQ +E +++S G+T +M I SGCDYL + MGLK A+
Sbjct: 181 RLLTKLDQHGQCIEVNRREFCAVREISLTGWTDAEFRQMAIFSGCDYLDGINKMGLKTAY 240
Query: 241 ALISKFKSYDKVIKHLKYSTV-SVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLSCISD 299
+I K K+ +KVI+ L++ + Y +F +A LTF HQRV+ P+ +++V L+ +
Sbjct: 241 RMIRKHKTPEKVIRQLQFEGKHKISENYLAAFKQAELTFMHQRVFCPEKQELVLLTEPTS 300
Query: 300 N--------IGNDLD-FLAKGIAIGDLDPFTQ 322
IG +D L++ IA GD++P T+
Sbjct: 301 GLDVEEMPFIGAKVDPELSRAIACGDVNPITK 332
>RGD|1309465 [details] [associations]
symbol:Exo1 "exonuclease 1" species:10116 "Rattus norvegicus"
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=ISO] [GO:0006310 "DNA
recombination" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0016446 "somatic hypermutation of immunoglobulin
genes" evidence=ISO] [GO:0035312 "5'-3' exodeoxyribonuclease
activity" evidence=ISO] [GO:0043566 "structure-specific DNA
binding" evidence=ISO] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=ISO] [GO:0045190
"isotype switching" evidence=ISO] [GO:0048256 "flap endonuclease
activity" evidence=ISO] [GO:0051908 "double-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=ISO]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
RGD:1309465 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298 GO:GO:0090305
GO:GO:0045190 GeneTree:ENSGT00510000047676 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0016446 OrthoDB:EOG4M91QT GO:GO:0048256
GO:GO:0045145 GO:GO:0051908 GO:GO:0043566 IPI:IPI00768759
Ensembl:ENSRNOT00000005314 UCSC:RGD:1309465 Uniprot:D3ZEB0
Length = 836
Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
Identities = 154/392 (39%), Positives = 229/392 (58%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGIQGLL +K P+++K+ +G VAVDTY WLHKGA++C+ +L KG PT R++ +CM
Sbjct: 1 MGIQGLLQFIKEASEPVNVKKYKGQAVAVDTYCWLHKGAIACAEKLAKGEPTDRYVGFCM 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
VN+L YGVKPIL+FDG LP K E E R R+ NL + + EG S + E +
Sbjct: 61 KFVNMLLSYGVKPILVFDGCTLPSKKEVERSRRERRQSNLLKGKQLLREGKVSEARECFT 120
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
++V+I+ ++AH++I+ + V +VAPYEADAQ+ +L + V+AVITEDSDL+ FGC
Sbjct: 121 RSVNITHAMAHKVIKAARALGVDCLVAPYEADAQLAYLNKAGIVQAVITEDSDLLAFGCK 180
Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAH 240
++I KMD+FG G+E + L K L FT++ MCILSGCDYL SL G+GL +A
Sbjct: 181 KVILKMDQFGNGLEVDQARLGMCKQLG-DVFTEEKFRYMCILSGCDYLASLRGIGLAKAC 239
Query: 241 ALISKFKSYD--KVIK---HLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLS 295
++ + D KVIK H ++VP Y F +A TF +Q V+DP ++ L+
Sbjct: 240 KVLRLANNPDIVKVIKKIGHYLKMNITVPEDYITGFIRANNTFLYQLVFDPIQRKLIPLN 299
Query: 296 CISDNIGNDL---------DFLAKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHLKNFK 346
D++ + D +A IA+G+ D T F+++ D S +S ++
Sbjct: 300 AYGDDVNPETLTYAGQYVNDSVALQIALGNRDINT---FEQIDDVSPDYTPAHSRSHSWN 356
Query: 347 PESERKKLDLPVQKNLLTKKFTTPRISPNHFS 378
++ +K PV ++ K + PR+ N S
Sbjct: 357 DKACQKS---PVASSIWHKNYC-PRLEVNSVS 384
>UNIPROTKB|Q9W6K2 [details] [associations]
symbol:exo1 "Exonuclease 1" species:8355 "Xenopus laevis"
[GO:0005634 "nucleus" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0045145 "single-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=ISS] [GO:0048256 "flap
endonuclease activity" evidence=ISS] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006298 GO:GO:0006310 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 CTD:9156 HOVERGEN:HBG081488 GO:GO:0048256
GO:GO:0045145 EMBL:AF134570 EMBL:BC084102 RefSeq:NP_001083827.1
UniGene:Xl.489 ProteinModelPortal:Q9W6K2 GeneID:399140
KEGG:xla:399140 Xenbase:XB-GENE-982081 Uniprot:Q9W6K2
Length = 734
Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
Identities = 177/545 (32%), Positives = 291/545 (53%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGIQGLL LK P+H+K+ +G VAVDTY WLHKGA +C+ +L KG PT +++ +CM
Sbjct: 1 MGIQGLLQFLKEASEPVHVKKYKGKTVAVDTYCWLHKGAFACAEKLAKGEPTDQYVQFCM 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
V++L +GVKPIL+FDG LP K + E R R+ NL + + EG + + E +
Sbjct: 61 KLVHMLLSFGVKPILVFDGCTLPSKKDVEKARREKRQTNLQKGKQLLREGKLAEARECFS 120
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
++V+I+ S+AHE+I+ + + V YIVAPYEAD+Q+ +L + EA+ITEDSDL+ FGC
Sbjct: 121 RSVNITSSMAHEVIKAARSEGVDYIVAPYEADSQLAYLNKNDFAEAIITEDSDLLAFGCK 180
Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAH 240
+++ KMDKFG G+E + + L FT++ MCILSGCDYL S+ G+GL +A
Sbjct: 181 KVLLKMDKFGNGLEIDQARFGMCRSLG-DVFTEEKFRYMCILSGCDYLPSIHGIGLAKAC 239
Query: 241 ALISKFKSYD--KVIKHL-KY--STVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLS 295
L+ + D KVI+ + +Y + ++VP Y E F +A TF +Q V+DP ++ L+
Sbjct: 240 KLLKVANNPDITKVIQKIGQYLKTNITVPEGYIEGFLRANNTFLYQLVFDPVERKLIPLN 299
Query: 296 CISDNI--------GNDL-DFLAKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHLKNFK 346
+++ G ++ D +A IA+G++D T+ +++ D + + + H
Sbjct: 300 PYGNDVNPEELNYAGPNMGDSVALQIALGNMDINTR---KQIDDYNPDIPQLSHHRSQSW 356
Query: 347 PESERKKLDLPVQKNLLTKK--FTTPRISPNHFSPEETSSLSPGEHHTAEASCDISCQSS 404
+ + TK T +I H SP + P + HT + S +
Sbjct: 357 DNKQLNRKTAHTDSIWYTKSEPCKTTKIEEIH-SPR--GLILPSKKHTVKRSYE---DGV 410
Query: 405 SRMELETVGNFPHNSSEKNCFASEVPEFSASPS--REMENERNAEHTSLPQFCRSIRNPC 462
S +L + +F N + + + AS + +++ N + P RN
Sbjct: 411 SDTDLISQYSFSKNKKARPDGDDPMQQVPASTMILQPLDDCANTKPKK-PIHQPKTRNAF 469
Query: 463 PALRKEHENKNCTDSVVGKGRTENRKVIVRSSYFLHKQVNKDDQENKQEKLVVENDAAID 522
A + + ++C+ SV G RS +F +K ++ ++E++V N +A+D
Sbjct: 470 -ATFLQRQKQDCS-SVSATG--------TRSRFF-YKPADEKPHCTEKEQIVC-NGSALD 517
Query: 523 MSENT 527
+++ T
Sbjct: 518 IAKET 522
>MGI|MGI:1349427 [details] [associations]
symbol:Exo1 "exonuclease 1" species:10090 "Mus musculus"
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IMP] [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=ISA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006298
"mismatch repair" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0008409
"5'-3' exonuclease activity" evidence=ISA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IMP] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0035312 "5'-3'
exodeoxyribonuclease activity" evidence=ISO] [GO:0043566
"structure-specific DNA binding" evidence=IDA] [GO:0045145
"single-stranded DNA specific 5'-3' exodeoxyribonuclease activity"
evidence=ISO] [GO:0045190 "isotype switching" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=ISO] [GO:0051908 "double-stranded
DNA specific 5'-3' exodeoxyribonuclease activity" evidence=ISO]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
MGI:MGI:1349427 GO:GO:0005634 GO:GO:0007126 GO:GO:0002455
GO:GO:0046872 GO:GO:0006298 GO:GO:0045190 eggNOG:COG0258
GeneTree:ENSGT00510000047676 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0016446 KO:K10746 CTD:9156 HOGENOM:HOG000112413
HOVERGEN:HBG081488 OrthoDB:EOG4M91QT GO:GO:0048256 GO:GO:0045145
GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566 EMBL:AJ238213 EMBL:AK028728
EMBL:AK166425 EMBL:BC006671 IPI:IPI00331190 RefSeq:NP_036142.2
UniGene:Mm.283046 ProteinModelPortal:Q9QZ11 SMR:Q9QZ11
STRING:Q9QZ11 PhosphoSite:Q9QZ11 PRIDE:Q9QZ11
Ensembl:ENSMUST00000039725 GeneID:26909 KEGG:mmu:26909
UCSC:uc007dtu.2 InParanoid:Q9QZ11 NextBio:304777 Bgee:Q9QZ11
CleanEx:MM_EXO1 Genevestigator:Q9QZ11 GermOnline:ENSMUSG00000039748
Uniprot:Q9QZ11
Length = 837
Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
Identities = 153/392 (39%), Positives = 228/392 (58%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGIQGLL ++ P+++K+ +G VAVDTY WLHKGA++C+ +L KG PT R++ +CM
Sbjct: 1 MGIQGLLQFIQEASEPVNVKKYKGQAVAVDTYCWLHKGAIACAEKLAKGEPTDRYVGFCM 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
VN+L YGVKPILIFDG LP K E E R R+ NL + + EG S + + +
Sbjct: 61 KFVNMLLSYGVKPILIFDGCTLPSKKEVERSRRERRQSNLLKGKQLLREGKVSEARDCFA 120
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
++++I+ ++AH++I+ + V +VAPYEADAQ+ +L + V+AVITEDSDL+ FGC
Sbjct: 121 RSINITHAMAHKVIKAARALGVDCLVAPYEADAQLAYLNKAGIVQAVITEDSDLLAFGCK 180
Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAH 240
++I KMD+FG G+E + L K L FT++ MCILSGCDYL SL G+GL +A
Sbjct: 181 KVILKMDQFGNGLEVDQARLGMCKQLG-DVFTEEKFRYMCILSGCDYLASLRGIGLAKAC 239
Query: 241 ALISKFKSYD--KVIK---HLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLS 295
++ + D KVIK H ++VP Y F +A TF +Q V+DP +V L+
Sbjct: 240 KVLRLANNPDIVKVIKKIGHYLRMNITVPEDYITGFIRANNTFLYQLVFDPIQRKLVPLN 299
Query: 296 CISDNIGNDL---------DFLAKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHLKNFK 346
D++ + D +A IA+G+ D T F+++ D S + +S ++
Sbjct: 300 AYGDDVNPETLTYAGQYVGDSVALQIALGNRDVNT---FEQIDDYSPDTMPAHSRSHSWN 356
Query: 347 PESERKKLDLPVQKNLLTKKFTTPRISPNHFS 378
++ +K P N + K PR+ N S
Sbjct: 357 EKAGQK----PPGTNSIWHKNYCPRLEVNSVS 384
>UNIPROTKB|E1C1G7 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0002455 "humoral immune response mediated by
circulating immunoglobulin" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0043566 "structure-specific DNA binding"
evidence=IEA] [GO:0045145 "single-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0048256 "flap endonuclease activity"
evidence=IEA] [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0002455
GO:GO:0006298 GO:GO:0006310 GO:GO:0090305
GeneTree:ENSGT00510000047676 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:AADN02011750 IPI:IPI00593066 Ensembl:ENSGALT00000017486
Uniprot:E1C1G7
Length = 798
Score = 624 (224.7 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
Identities = 139/365 (38%), Positives = 210/365 (57%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGIQGLL +K P H+K+ G VAVD Y WLHKG+ C+ +L +G PT ++ +CM
Sbjct: 1 MGIQGLLQFIKEAAEPAHVKKYRGQAVAVDAYCWLHKGSYGCAEKLARGEPTDHYVVFCM 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
V++L +G+KP+L+FDG LP K E E R R+ NL + + EG S + + +
Sbjct: 61 KLVDMLLSFGIKPVLVFDGCTLPSKKEVEKARREKRQANLLKGKQLFREGKLSEARDCFA 120
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
++V+++ ++AHE+I+ + + V IVAPYEADAQ+ +L + V+A+ITEDSDL+ FGC
Sbjct: 121 RSVNVTHAMAHEVIKAARARGVDCIVAPYEADAQLAYLNKTGVVQAIITEDSDLLAFGCK 180
Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAH 240
++ K+DKFG G+E + L K L FT++ MCILSGCDYL S+ G+GL +A
Sbjct: 181 KVFLKIDKFGNGLEIDQARLGNCKQLG-NIFTEEKFRYMCILSGCDYLSSIHGIGLAKAC 239
Query: 241 ALISKFKSYD--KVIK---HLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLS 295
L+ + D KVIK H ++V Y + F +A TF +Q V+DP +V L+
Sbjct: 240 KLLKLANNPDIIKVIKKMGHYLKMNITVSEEYIQGFTRANNTFLYQLVFDPIKRKLVPLN 299
Query: 296 CISDNIGNDLDFLAKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHLKNFKPESERKKLD 355
+D+I + L G GD F Q+ + + + N+ P++ + L
Sbjct: 300 DYADDIDPET-LLYAGRHFGDSTGF-QIALGNID------IDTMEQIDNYNPDTAQ--LQ 349
Query: 356 LPVQK 360
PVQ+
Sbjct: 350 PPVQQ 354
Score = 49 (22.3 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
Identities = 40/204 (19%), Positives = 68/204 (33%)
Query: 339 NSHLKNFKPESERKKLDLPVQKNLLTKKFTTPRISPNHFSPEETSSLSPGEHHTAEASCD 398
+S N P + K +KN T P + F + L + D
Sbjct: 465 SSESSNSLPRVKNKFASFLQRKNKQTDAVIVPGTRSSRFFCNDADMLGFKAKDDGDTIED 524
Query: 399 ISCQSSSRMELETVGN--FPHNSSEKNCFASEVPE------FS-ASPSREMENERNAEHT 449
+ + + E++ V P +EK S +PE F S HT
Sbjct: 525 VE-EDCKQQEVKHVAEDETPFLETEKTKTVSSLPEERPRSCFQWLSILGNHSGNPGPSHT 583
Query: 450 SLPQFCRSIRNPCPALRKEHENKNCTDS--VVGKGRTENRKVIVRSSYFL-HKQVNKDDQ 506
Q R+ C + + N +S V G+ E+ +I + K V
Sbjct: 584 VFSQQSHQQRSNCMESQADDSNGVQAESGAVCGESDEESSPLIEPQCFSQSQKSVEPPQC 643
Query: 507 ENKQEKLVVENDAAIDMSENTGLQ 530
+ K++ E+D+ + +N G Q
Sbjct: 644 SLRSSKILQESDSNSKLFDNQGTQ 667
>UNIPROTKB|E2QWL7 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298
GO:GO:0090305 GO:GO:0045190 GeneTree:ENSGT00510000047676
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0016446 KO:K10746
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:AAEX03005244 RefSeq:XP_003639234.1 ProteinModelPortal:E2QWL7
Ensembl:ENSCAFT00000024978 GeneID:100855525 KEGG:cfa:100855525
NextBio:20863405 Uniprot:E2QWL7
Length = 836
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 139/344 (40%), Positives = 210/344 (61%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGI GLL +K PIH+++ +G VAVDTY WLHKGA++C+ +L +G PT +++ +CM
Sbjct: 1 MGIHGLLQFIKEASEPIHVRKYKGQVVAVDTYCWLHKGAIACAEKLARGEPTDKYVGFCM 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
VN+L +G+KP+LIFDG LP K E E R R+ NL + + EG S + E +
Sbjct: 61 KFVNMLLSHGIKPVLIFDGCTLPSKKEVEKSRRERRQANLLKGKQLLREGKVSEARECFS 120
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
++++I+ ++AH++I+ + Q V +VAPYEADAQ+ +L + V+A+ITEDSDL+ FGC
Sbjct: 121 RSINITHAMAHKVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFGCK 180
Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAH 240
++I KMD+FG G+E + L + L FT++ MCILSGCDYL SL G+GL +A
Sbjct: 181 KVILKMDQFGNGLEIDQARLGMCRQLG-DVFTEEKFRYMCILSGCDYLSSLRGIGLAKAC 239
Query: 241 ALISKFKSYD--KVIK---HLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLS 295
++ + D KVIK H ++VP Y + F +A TF +Q V+DP ++ L+
Sbjct: 240 KVLRLANNPDIVKVIKKIGHYLKMNITVPEDYIKGFIRANNTFLYQLVFDPVRRKLIPLN 299
Query: 296 CISDNIGNDL---------DFLAKGIAIGDLDPFTQLPFQEVSD 330
D+I + D +A IA+G+ D T F+++ D
Sbjct: 300 AYEDDIDPETLSYAGQYFDDSIALQIALGNKDINT---FEQIDD 340
>UNIPROTKB|E1BF15 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298
GO:GO:0090305 GO:GO:0045190 GeneTree:ENSGT00510000047676
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0016446 KO:K10746 CTD:9156
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:DAAA02042804 IPI:IPI00698763 RefSeq:XP_002694001.1
UniGene:Bt.62135 Ensembl:ENSBTAT00000012365 GeneID:506390
KEGG:bta:506390 NextBio:20867588 Uniprot:E1BF15
Length = 835
Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
Identities = 142/355 (40%), Positives = 211/355 (59%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGI GLL +K PIHI++ +G VAVDTY WLHKGA++C+ +L KG PT +++ +CM
Sbjct: 1 MGIHGLLQFIKEASEPIHIRKYKGQVVAVDTYCWLHKGAVACAEKLAKGEPTDKYVGFCM 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
VN+L +G+KPIL+FDG LP K E E R R+ NL + + EG S + E +
Sbjct: 61 KLVNMLLSHGIKPILVFDGCTLPSKKEVEKSRRERRQANLLKGKQLLREGKVSEARECFI 120
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
++++I+ ++AH +I+ + Q V +VAPYEADAQ+ +L + V+AVITEDSDL+ FGC
Sbjct: 121 RSINITHTMAHNVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAVITEDSDLLAFGCK 180
Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAH 240
++I KMD+FG G+E + L K L FT++ MCILSGCDYL SL G+GL +A
Sbjct: 181 KVILKMDQFGNGLEVDQARLGMCKQLG-DVFTEEKFRYMCILSGCDYLSSLRGIGLAKAC 239
Query: 241 ALISKFKSYD--KVIK---HLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLS 295
L+ + D KV++ H ++VP Y + F +A TF +Q V+DP ++ L+
Sbjct: 240 KLLRLANNPDILKVVRKIGHYLKMNITVPEDYIKGFIRANNTFLYQLVFDPIKRKLIPLN 299
Query: 296 CISDNI--------GNDLD-FLAKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSH 341
D++ G +D +A IA+G+ D T + ++ + SH
Sbjct: 300 AYEDDVDPKTLSYAGQYVDDSIALQIALGNKDINTLEQIDHYNPDTAMPAQSRSH 354
>SGD|S000005559 [details] [associations]
symbol:EXO1 "5'-3' exonuclease and flap-endonuclease"
species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;IDA;IPI] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0031292 "gene conversion
at mating-type locus, DNA double-strand break processing"
evidence=IMP] [GO:0031860 "telomeric 3' overhang formation"
evidence=IGI] [GO:0000706 "meiotic DNA double-strand break
processing" evidence=IGI] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IMP] [GO:0000729 "DNA double-strand break
processing" evidence=IGI;IMP] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0016788
"hydrolase activity, acting on ester bonds" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IGI] [GO:0017108
"5'-flap endonuclease activity" evidence=IDA] [GO:0008409 "5'-3'
exonuclease activity" evidence=IDA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 SGD:S000005559 GO:GO:0005634
EMBL:X87331 EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0006298
GO:GO:0000706 GO:GO:0017108 GO:GO:0031292 GO:GO:0008409
GO:GO:0031860 eggNOG:COG0258 GeneTree:ENSGT00510000047676
OrthoDB:EOG44QX8J PANTHER:PTHR11081 SUPFAM:SSF47807 BRENDA:3.1.11.1
KO:K10746 EMBL:U86134 EMBL:Z74941 EMBL:S69545 PIR:S62169
RefSeq:NP_014676.1 ProteinModelPortal:P39875 SMR:P39875
DIP:DIP-2421N IntAct:P39875 MINT:MINT-553509 STRING:P39875
EnsemblFungi:YOR033C GeneID:854198 KEGG:sce:YOR033C CYGD:YOR033c
HOGENOM:HOG000112416 NextBio:976029 Genevestigator:P39875
GermOnline:YOR033C Uniprot:P39875
Length = 702
Score = 573 (206.8 bits), Expect = 4.8e-60, Sum P(2) = 4.8e-60
Identities = 116/298 (38%), Positives = 181/298 (60%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGIQGLLP LK I P+ ++ EG +A+D Y+WLH+ A SC+ EL G PT +++ + +
Sbjct: 1 MGIQGLLPQLKPIQNPVSLRRYEGEVLAIDGYAWLHRAACSCAYELAMGKPTDKYLQFFI 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
R +LL+ + V+P L+FDG +P+K E+KR RKEN A A + G + +++Q
Sbjct: 61 KRFSLLKTFKVEPYLVFDGDAIPVKKSTESKRRDKRKENKAIAERLWACGEKKNAMDYFQ 120
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
K VDI+P +A +I K + YIVAP+EAD+QM +L V+ +I+EDSDL+ FGC
Sbjct: 121 KCVDITPEMAKCIICYCKLNGIRYIVAPFEADSQMVYLEQKNIVQGIISEDSDLLVFGCR 180
Query: 181 RIIFKMDKFGQGVEFQC--SMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKR 238
R+I K++ +G+ +E C + ++ K G T + ++ M LSGCDY +P +GL
Sbjct: 181 RLITKLNDYGECLEI-CRDNFIKLPKKFPLGSLTNEEIITMVCLSGCDYTNGIPKVGLIT 239
Query: 239 AHALISKFKSYDKVIKHL-KYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLS 295
A L+ +F + +++I + + + +P Y + AVL FQ QRV+ P + IV L+
Sbjct: 240 AMKLVRRFNTIERIILSIQREGKLMIPDTYINEYEAAVLAFQFQRVFCPIRKKIVSLN 297
Score = 60 (26.2 bits), Expect = 4.8e-60, Sum P(2) = 4.8e-60
Identities = 32/164 (19%), Positives = 67/164 (40%)
Query: 342 LKNFKPESERKKLDLPVQKNLLTKKFTTPRISPNHFSPEETSSLSPGEHHTAEASCDISC 401
+++FK ++ + L+ PV ++ L+ + + I+ N E+ +LS +E DI
Sbjct: 466 IQDFKEDTNSQSLEEPVSESQLSTQIPSSFITTNL---EDDDNLS---EEVSEVVSDIE- 518
Query: 402 QSSSRMELETVGNFPHNSSEKNCFASEVPEFSASPSREMENERNAEHTSLPQFCRSIRNP 461
+ E +T+GN +N+ + ++S + + Q RSI
Sbjct: 519 EDRKNSEGKTIGNEIYNTDDDGD-GDTSEDYSETAESRVPTSSTTSFPGSSQ--RSISGC 575
Query: 462 CPALRKEHENKNCTDSVVGKGRTENRKVIVRSSYFLHKQVNKDD 505
L+K + + + + R V +S ++ N+DD
Sbjct: 576 TKVLQKFRYSSSFSGVNANRQPLFPRHVNQKSRGMVYVNQNRDD 619
>POMBASE|SPBC29A10.05 [details] [associations]
symbol:exo1 "exonuclease I Exo1" species:4896
"Schizosaccharomyces pombe" [GO:0000706 "meiotic DNA double-strand
break processing" evidence=TAS] [GO:0000723 "telomere maintenance"
evidence=TAS] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005819
"spindle" evidence=IDA] [GO:0006298 "mismatch repair"
evidence=IGI;IMP] [GO:0006312 "mitotic recombination" evidence=TAS]
[GO:0008409 "5'-3' exonuclease activity" evidence=IMP] [GO:0017108
"5'-flap endonuclease activity" evidence=ISO] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 PomBase:SPBC29A10.05 GO:GO:0005634
GO:GO:0005819 GO:GO:0046872 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006298 GO:GO:0003690 GO:GO:0006312 GO:GO:0000723
GO:GO:0000706 GO:GO:0043570 GO:GO:0017108 GO:GO:0008409
eggNOG:COG0258 OrthoDB:EOG44QX8J PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 EMBL:L35174 PIR:T43288 RefSeq:NP_596050.1
ProteinModelPortal:P53695 STRING:P53695 EnsemblFungi:SPBC29A10.05.1
GeneID:2540348 KEGG:spo:SPBC29A10.05 NextBio:20801476
Uniprot:P53695
Length = 571
Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
Identities = 150/453 (33%), Positives = 233/453 (51%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGI+GLL LLK + H++E G + VD Y WLHK +C+ EL T +++ Y +
Sbjct: 1 MGIKGLLGLLKPMQKSSHVEEFSGKTLGVDGYVWLHKAVFTCAHELAFNKETDKYLKYAI 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
H+ +L++YGVKP+++FDGG LP K E KR R+E + EG S + +
Sbjct: 61 HQALMLQYYGVKPLIVFDGGPLPCKASTEQKRKERRQEAFELGKKLWDEGKKSQAIMQFS 120
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
+ VD++P +A +LI L++ + IVAPYEADAQ+ +L ++ +ITEDSD++ FG
Sbjct: 121 RCVDVTPEMAWKLIIALREHGIESIVAPYEADAQLVYLEKENIIDGIITEDSDMLVFGAQ 180
Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAH 240
++FKMD FG + + + + +DL+ + L M I SGCDY + GMGLK A
Sbjct: 181 TVLFKMDGFGNCITIRRNDIANAQDLNLR-LPIEKLRHMAIFSGCDYTDGVAGMGLKTAL 239
Query: 241 ALISKFKSYDKVIKHLKYS-TVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLS---- 295
+ K+ I+ ++ ++ VP +E+ F A L F+HQRVY PK + +VHLS
Sbjct: 240 RYLQKYPEPRAAIRAMRLDKSLKVPVSFEKEFALADLAFRHQRVYCPKDKTLVHLSPPER 299
Query: 296 --CISDN--IGNDLDF-LAKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHLKNFKPESE 350
+ ++ IG+ D LA IA G +P T+ F ++ D+S S K S+
Sbjct: 300 ELSVHEDAFIGSFFDNQLAIDIAEGRSNPITKCAF-DIKDSS-----MQSFTKTTITISK 353
Query: 351 RKKLDLPVQKNLLTKKFTTPRISPNHFSPEETSSLSPGEHHTAEASCDISCQSSS-RMEL 409
RK + N K + S + +++ H A DIS + S +
Sbjct: 354 RKGISKTDISNFFMKSIPPSKRPTKSTSLIDVTNVKVQRTHLAN---DISSEKQSIKSAN 410
Query: 410 ETVGNFPHNSSEKNCFASEVPEFSASPSREMEN 442
E P ++S K F + + S S ++ EN
Sbjct: 411 EKAYVTPKSNSLKPGFGKSLSDISNSATKN-EN 442
>CGD|CAL0003631 [details] [associations]
symbol:EXO1 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0031860 "telomeric 3' overhang
formation" evidence=IEA] [GO:0006298 "mismatch repair"
evidence=IEA] [GO:0000706 "meiotic DNA double-strand break
processing" evidence=IEA] [GO:0031292 "gene conversion at
mating-type locus, DNA double-strand break processing"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 CGD:CAL0003631 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 EMBL:AACQ01000063
EMBL:AACQ01000062 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 RefSeq:XP_716765.1 RefSeq:XP_716825.1
ProteinModelPortal:Q5A520 STRING:Q5A520 GeneID:3641527
GeneID:3641583 KEGG:cal:CaO19.8541 KEGG:cal:CaO19.926
Uniprot:Q5A520
Length = 699
Score = 530 (191.6 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
Identities = 114/356 (32%), Positives = 193/356 (54%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MG+ GLL +L+ I P ++ G +A+DTY WLH+ +SC+ ELC G PT +I +
Sbjct: 1 MGVNGLLQILREIQDPCSLERYRGQTLAIDTYGWLHRALVSCAEELCLGKPTRNYITAIL 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
+++ +L H+G+ P +FDG LP K E +R R+E A + + N +Y+ +
Sbjct: 61 NKIQMLNHFGITPYFVFDGASLPTKQETNRERQLKRQEAKELAEKYIAANNRKLAYKQFM 120
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
KA ++ +A ++ L ++ YIVAPYEAD QM +L V+ +++EDSDL+ FGC
Sbjct: 121 KAAYVTSQMAKSVMCELDNLSIKYIVAPYEADPQMVYLEKMGIVDGILSEDSDLLIFGCK 180
Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDLSF-GGFTKQMLLEMCILSGCDYLQSLPGMGLKRA 239
++I K+ G VE K K++ + + + L + +LSGCDY + +PG+GLK A
Sbjct: 181 KLITKLKDDGTCVEINRDKFDKVKEIPYLNQYNMEQLRLVAMLSGCDYTKGVPGIGLKTA 240
Query: 240 HALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLSCISD 299
L+ K+ ++ K++ L+ +P + + A L FQ Q+V+DP ++ + L+
Sbjct: 241 FQLVRKYNNFTKIMIALRSMGKKIPDTFSDEVKLANLAFQFQKVFDPTSQKLTTLNEYPQ 300
Query: 300 N---IGNDLDFLAK--GIAIGDLDPFTQLPFQEVSDNSH-LVVGQNSHLKNFKPES 349
+ + D L G + D + + QL ++ N+H ++V + L K ES
Sbjct: 301 DGTEVEADQGLLESCCGKTLTD-EIYQQLCNGKIHPNTHEVLVSREQSLTVLKSES 355
Score = 52 (23.4 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
Identities = 31/139 (22%), Positives = 56/139 (40%)
Query: 361 NLLTKKFTTPRISP-NHFSPEETSSLSPGEHHTAEASCDISCQSSSRMELETVGN-FPHN 418
N+ T KF TP+ P PE ++ E + + D S S E+ G+ H
Sbjct: 466 NVTTSKFFTPKAKPIEKIQPENPTT----EENLNKPDWDSSLIDDS--EITDYGHGHNHE 519
Query: 419 SSEKNCFASEVPEFSASPSREMENERNAEHTSLPQFCRSIR-NPCPALRKEHENKN---- 473
SS+K + + + E E + T +I+ +P +++ ++ N
Sbjct: 520 SSDKPVDTQNILDELTDNDNDHEEEEPQQETD----SNAIKIHPIVDVKQSPQSDNGFDI 575
Query: 474 CT-DSVVGKGRTENRKVIV 491
C+ D + + +NR V V
Sbjct: 576 CSNDDEIEESPIKNRVVAV 594
>FB|FBgn0015553 [details] [associations]
symbol:tos "tosca" species:7227 "Drosophila melanogaster"
[GO:0008852 "exodeoxyribonuclease I activity" evidence=ISS]
[GO:0004518 "nuclease activity" evidence=NAS] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005634 EMBL:AE014134 GO:GO:0046872 GO:GO:0003677
GO:GO:0006298 GO:GO:0006310 eggNOG:COG0258
GeneTree:ENSGT00510000047676 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 GO:GO:0048256 GO:GO:0045145 EMBL:X89021 EMBL:X89022
EMBL:AY051794 EMBL:BT058042 RefSeq:NP_477145.1 UniGene:Dm.4197
ProteinModelPortal:Q24558 SMR:Q24558 IntAct:Q24558 MINT:MINT-297328
STRING:Q24558 PRIDE:Q24558 EnsemblMetazoa:FBtr0081131 GeneID:35119
KEGG:dme:Dmel_CG10387 UCSC:CG10387-RA CTD:35119 FlyBase:FBgn0015553
InParanoid:Q24558 OMA:LAKACKF OrthoDB:EOG42JM78 PhylomeDB:Q24558
GenomeRNAi:35119 NextBio:791961 Bgee:Q24558 GermOnline:CG10387
GO:GO:0051908 Uniprot:Q24558
Length = 732
Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
Identities = 121/305 (39%), Positives = 168/305 (55%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGI GL+P + +H+K++ G VAVDTY WLHKG C+ +L +G T +I YC+
Sbjct: 1 MGITGLIPFVGKASSQLHLKDIRGSTVAVDTYCWLHKGVFGCAEKLARGEDTDVYIQYCL 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
VN+L Y +KPIL+FDG LP K E +R SRK++ RA E G + +
Sbjct: 61 KYVNMLLSYDIKPILVFDGQHLPAKALTEKRRRDSRKQSKERAAELLRLGRIEEARSHMR 120
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
+ VD++ +A LI+ + +NV IVAPYEADAQM +L + + +ITEDSDL FG
Sbjct: 121 RCVDVTHDMALRLIRECRSRNVDCIVAPYEADAQMAWLNRADVAQYIITEDSDLTLFGAK 180
Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAH 240
IIFK+D G G+ + L + + MCILSGCDYL SLPG+GL +A
Sbjct: 181 NIIFKLDLNGSGLLVEAEKLHLAMGCTEEKYHFDKFRRMCILSGCDYLDSLPGIGLAKAC 240
Query: 241 ALISKFKSYD------KVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHL 294
I K + D K+ +L + V Y E+F KA TF+H +Y+P + L
Sbjct: 241 KFILKTEQEDMRIALKKIPSYLNMRNLEVDDDYIENFMKAEATFRHMFIYNPLERRMQRL 300
Query: 295 SCISD 299
+ D
Sbjct: 301 CALED 305
>SGD|S000002671 [details] [associations]
symbol:DIN7 "Mitochondrial nuclease functioning in DNA repair
and replication" species:4932 "Saccharomyces cerevisiae"
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS;IDA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA;ISS] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
SGD:S000002671 GO:GO:0005739 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 EMBL:BK006938 GO:GO:0004519 EMBL:Z70202
EMBL:Z68290 GO:GO:0004518 RefSeq:NP_010553.3 GeneID:851860
KEGG:sce:YDR267C EMBL:X90707 PIR:S61118 RefSeq:NP_010549.3
ProteinModelPortal:Q12086 SMR:Q12086 DIP:DIP-5214N IntAct:Q12086
MINT:MINT-493226 STRING:Q12086 EnsemblFungi:YDR263C GeneID:851856
KEGG:sce:YDR263C CYGD:YDR263c eggNOG:COG0258
GeneTree:ENSGT00510000047676 OrthoDB:EOG44QX8J NextBio:969788
Genevestigator:Q12086 GermOnline:YDR263C PANTHER:PTHR11081
SUPFAM:SSF47807 Uniprot:Q12086
Length = 430
Score = 452 (164.2 bits), Expect = 1.7e-42, P = 1.7e-42
Identities = 101/307 (32%), Positives = 171/307 (55%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGI GLLP LK I + +K+ +A+D Y+WLH+ + +C+ EL PT++++ + +
Sbjct: 1 MGIPGLLPQLKRIQKQVSLKKYMYQTLAIDGYAWLHRASCACAFELVMNKPTNKYLQFFI 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
R+ LL+ +KP ++FDG L +K E +R + R EN A + S GN + E++Q
Sbjct: 61 KRLQLLKRLKIKPYIVFDGDSLFVKNHTETRRRKKRLENEMIAKKLWSAGNRYNAMEYFQ 120
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
K+VDI+P +A +I K ++ YIVAP+EAD QM +L ++ +I+EDSDL+ FGC
Sbjct: 121 KSVDITPEMAKCIIDYCKLHSIPYIVAPFEADPQMVYLEKMGLIQGIISEDSDLLVFGCK 180
Query: 181 RIIFKMDKFGQGVEFQ---CSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLK 237
+I K++ G+ +E S L +N L G ++Q + L+GCDY + +G+
Sbjct: 181 TLITKLNDQGKALEISKDDFSALPENFPL--GELSEQQFRNLVCLAGCDYTSGIWKVGVV 238
Query: 238 RAHALISKFKSY-DKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLSC 296
A ++ ++ D +I+ + + +++ A FQ+QRV+ P + I L+
Sbjct: 239 TAMKIVKRYSEMKDILIQIERTEKLCFSKAFKQQVEFANYAFQYQRVFCPLSNQITTLNN 298
Query: 297 ISDNIGN 303
I + N
Sbjct: 299 IPKAVTN 305
>WB|WBGene00009731 [details] [associations]
symbol:exo-1 species:6239 "Caenorhabditis elegans"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 EMBL:Z93382
eggNOG:COG0258 GeneTree:ENSGT00510000047676 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 PIR:T22235 RefSeq:NP_499770.1
ProteinModelPortal:O62245 SMR:O62245 IntAct:O62245 MINT:MINT-117279
STRING:O62245 PaxDb:O62245 EnsemblMetazoa:F45G2.3 GeneID:176765
KEGG:cel:CELE_F45G2.3 UCSC:F45G2.3 CTD:176765 WormBase:F45G2.3
HOGENOM:HOG000022038 InParanoid:O62245 OMA:IHMGEET NextBio:893914
Uniprot:O62245
Length = 639
Score = 407 (148.3 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 114/304 (37%), Positives = 153/304 (50%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGI GLLP +K+ +I EL G VA+D LH+G C ++ G T +++Y
Sbjct: 1 MGISGLLPFVKNACRKGNILELRGKSVAIDVSCLLHRGLTGCMDKIHMGEETQSYVNYVN 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
V L G +++FDG LP K +R R++ A ++G + + Y+
Sbjct: 61 KYVKELLGMGCHVVMVFDGRPLPAKKGTNEERRELREKRKEHAEMLLAKGLEREARDTYR 120
Query: 121 KAVDISPSIAHELIQVLKQQ-NVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGC 179
A IS I IQ + NV +VAPYEADAQ+ +L K V+AVITEDSDLI FGC
Sbjct: 121 LATSISADIVENTIQYFRSMTNVDIVVAPYEADAQLAYLVQEKLVDAVITEDSDLIVFGC 180
Query: 180 SRIIFKMDKFGQGVEFQCSMLQK-NKDLSF----GG--FTKQMLLEMCILSGCDYLQS-L 231
I FK Q +CS+ +K N F GG F +CILSGCDYLQ+ L
Sbjct: 181 EMIYFKW----QSATGECSVYEKCNLKNCFTGELGGDKFDFVKFRRICILSGCDYLQAGL 236
Query: 232 PGMGLKRAHALISKFKSYD------KVIKHLKYSTVS--VPPFYEESFGKAVLTFQHQRV 283
PG+GL A S D KV +LK + V + +F KA TF+HQ V
Sbjct: 237 PGVGLSTAAKFFSMTSIKDLRTLLRKVPSYLKNPKLKEHVNDEFIRNFEKAENTFKHQIV 296
Query: 284 YDPK 287
+DP+
Sbjct: 297 FDPR 300
Score = 40 (19.1 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 29/128 (22%), Positives = 48/128 (37%)
Query: 467 KEHENKNCTDSVVGKGRTENRKVIVRSSYFLHKQVNKDDQENKQEK-----LVVENDAAI 521
+E +N +SV + + EN ++ L K V+ D K K L +N A
Sbjct: 496 QEKVKENTKESVAEE-KVENSNEELKPPPILRKAVSTPDSARKTHKFQSPLLNHQNSAPP 554
Query: 522 DMSENTGLQ-SAHFDYSYLKGTAIKRKTSLIDSVH---TDKMGSKLMRTN--ASLHNNGY 575
+ + Q S +F + K K T K+ K+ +T A+L N
Sbjct: 555 SLPDRKPAQTSKYFSKPTSENGVPKTKNPFRCPAFVKPTQKVEEKIEKTTILAALEENSV 614
Query: 576 SDPNLDKT 583
P+ + T
Sbjct: 615 PMPSSNTT 622
>UNIPROTKB|Q5T397 [details] [associations]
symbol:EXO1 "Exonuclease 1" species:9606 "Homo sapiens"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR019974 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00842 SMART:SM00484 SMART:SM00485
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 PANTHER:PTHR11081
EMBL:AL365366 UniGene:Hs.498248 HGNC:HGNC:3511 IPI:IPI00844071
SMR:Q5T397 STRING:Q5T397 Ensembl:ENST00000423131
HOGENOM:HOG000264445 Uniprot:Q5T397
Length = 169
Score = 239 (89.2 bits), Expect = 1.1e-34, Sum P(2) = 1.1e-34
Identities = 46/116 (39%), Positives = 76/116 (65%)
Query: 85 KIEQENKRARSRKENLARAIECESEGNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSY 144
K+ + R R+ NL + + EG S + E + ++++I+ ++AH++I+ + Q V
Sbjct: 45 KLAKGEPTDRRRQANLLKGKQLLREGKVSEARECFTRSINITHAMAHKVIKAARSQGVDC 104
Query: 145 IVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSRIIFKMDKFGQGVEFQCSML 200
+VAPYEADAQ+ +L + V+A+ITEDSDL+ FGC ++I KMD+FG G+E + L
Sbjct: 105 LVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARL 160
Score = 172 (65.6 bits), Expect = 1.1e-34, Sum P(2) = 1.1e-34
Identities = 31/54 (57%), Positives = 40/54 (74%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSR 54
MGIQGLL +K PIH+++ +G VAVDTY WLHKGA++C+ +L KG PT R
Sbjct: 1 MGIQGLLQFIKEASEPIHVRKYKGQVVAVDTYCWLHKGAIACAEKLAKGEPTDR 54
>UNIPROTKB|Q5T398 [details] [associations]
symbol:EXO1 "Exonuclease 1" species:9606 "Homo sapiens"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR019974 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00842 SMART:SM00484 SMART:SM00485
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 PANTHER:PTHR11081
EMBL:AL365366 UniGene:Hs.498248 HGNC:HGNC:3511 HOGENOM:HOG000264445
IPI:IPI00644243 SMR:Q5T398 STRING:Q5T398 Ensembl:ENST00000437497
Uniprot:Q5T398
Length = 166
Score = 220 (82.5 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
Identities = 45/116 (38%), Positives = 73/116 (62%)
Query: 85 KIEQENKRARSRKENLARAIECESEGNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSY 144
K+ + R R+ NL + + EG S + E + ++++I+ ++AH+ + Q V
Sbjct: 45 KLAKGEPTDRRRQANLLKGKQLLREGKVSEARECFTRSINITHAMAHK---AARSQGVDC 101
Query: 145 IVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSRIIFKMDKFGQGVEFQCSML 200
+VAPYEADAQ+ +L + V+A+ITEDSDL+ FGC ++I KMD+FG G+E + L
Sbjct: 102 LVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARL 157
Score = 172 (65.6 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
Identities = 31/54 (57%), Positives = 40/54 (74%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSR 54
MGIQGLL +K PIH+++ +G VAVDTY WLHKGA++C+ +L KG PT R
Sbjct: 1 MGIQGLLQFIKEASEPIHVRKYKGQVVAVDTYCWLHKGAIACAEKLAKGEPTDR 54
>UNIPROTKB|Q5T399 [details] [associations]
symbol:EXO1 "Exonuclease 1" species:9606 "Homo sapiens"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0002455 "humoral immune response mediated
by circulating immunoglobulin" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR019974 Pfam:PF00752 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00485 GO:GO:0002455 GO:GO:0006281 GO:GO:0004527
GO:GO:0090305 GO:GO:0045190 PANTHER:PTHR11081 GO:GO:0016446
HOGENOM:HOG000112413 EMBL:AL365366 UniGene:Hs.498248 HGNC:HGNC:3511
GO:GO:0043566 IPI:IPI01012173 SMR:Q5T399 STRING:Q5T399
Ensembl:ENST00000450748 Uniprot:Q5T399
Length = 135
Score = 330 (121.2 bits), Expect = 5.3e-29, P = 5.3e-29
Identities = 61/135 (45%), Positives = 92/135 (68%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGIQGLL +K PIH+++ +G VAVDTY WLHKGA++C+ +L KG PT R++ +CM
Sbjct: 1 MGIQGLLQFIKEASEPIHVRKYKGQVVAVDTYCWLHKGAIACAEKLAKGEPTDRYVGFCM 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
VN+L +G+KPIL+FDG LP K E E R R+ NL + + EG S + E +
Sbjct: 61 KFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECFT 120
Query: 121 KAVDISPSIAHELIQ 135
++++I+ ++AH++I+
Sbjct: 121 RSINITHAMAHKVIK 135
>GENEDB_PFALCIPARUM|PF07_0105 [details] [associations]
symbol:PF07_0105 "exonuclease i, putative"
species:5833 "Plasmodium falciparum" [GO:0005634 "nucleus"
evidence=ISS] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0006298 "mismatch repair" evidence=ISS] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0003677 GO:GO:0006281
GO:GO:0004527 GO:GO:0090305 EMBL:AL844506 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 RefSeq:XP_001349153.1
ProteinModelPortal:Q8IBK1 IntAct:Q8IBK1 MINT:MINT-1547666
EnsemblProtists:PF07_0105:mRNA GeneID:2655158 KEGG:pfa:PF07_0105
EuPathDB:PlasmoDB:PF3D7_0725000 Uniprot:Q8IBK1
Length = 1347
Score = 275 (101.9 bits), Expect = 5.1e-28, Sum P(3) = 5.1e-28
Identities = 58/196 (29%), Positives = 109/196 (55%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGI LL LK I+ HI + + V VD W+H+G +SC+ ++ ++++
Sbjct: 1 MGISNLLQFLKPIIKNSHISKYKNEVVGVDIMCWIHRGLISCAYDIVTDQYNDSYLNFIE 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAI-ECESEGNSSASYEFY 119
+ + ++ +K + +FDG LP K ++EN ++R+E + E S+ + + E
Sbjct: 61 KMLVPIYNHNIKVVFVFDGEELPEK-KKENMIRKNRREKAKMELQEIISKVKNPRTNEMV 119
Query: 120 QK----AVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLI 175
K A+ +S I + + +++N+ YI++PYEADAQ+++L + I+EDSDL+
Sbjct: 120 LKKCIQAISVSKEIIDSVKEFCRKKNIDYIISPYEADAQLSYLCRMGFISCAISEDSDLL 179
Query: 176 PFGCSRIIFKMDKFGQ 191
+GC R+++K+ G+
Sbjct: 180 VYGCPRVLYKLKNTGE 195
Score = 98 (39.6 bits), Expect = 5.1e-28, Sum P(3) = 5.1e-28
Identities = 27/74 (36%), Positives = 38/74 (51%)
Query: 211 FTKQMLLEMCILSGCDYLQS--LPGMGLKRAHALISKFKSYDKVIKHLKYSTV---SVPP 265
F M L MC+LSGCDY + GMG+K A+ LI + K+ + + H S + P
Sbjct: 333 FNIDMFLTMCVLSGCDYSNDFHITGMGIKTAYNLIFQHKNIENIF-HFLISNDRWRNKIP 391
Query: 266 FYEESFGKAVLTFQ 279
+F K + TFQ
Sbjct: 392 ENLNTFDKLMNTFQ 405
Score = 76 (31.8 bits), Expect = 5.1e-28, Sum P(3) = 5.1e-28
Identities = 55/286 (19%), Positives = 111/286 (38%)
Query: 338 QNSHLKNFKPESERKKLDLPVQKNLLTKKFTTPRISPNHFSPEETSSLSPGEHHTAEASC 397
+N L+N P E +K L KN K + S + E+H S
Sbjct: 1026 KNDLLRN--PLEESRKSSLTSYKNKTPSKNVNSKSQLRITSFFKRIDKKTNENHNMHNST 1083
Query: 398 DISCQSSSRMELETVGNFPHNSSEKNCFASEVPEFSASPSRE-MENERNAEHTSLPQFCR 456
C + + + N + N + + +S S E N N ++ + F +
Sbjct: 1084 QKICNDHNNNPNDNIQN---DKFYNNIYMNSPINYSVEYSEEDYINSFNDNYSDMKTFQK 1140
Query: 457 SIRNPCPALRKEHENKNCTD--SVVGKGRTENRKVIVRSSYFLHKQVNKDDQENKQEKLV 514
+ ++ ++ + D +V + + +N K+ S+ + + KD N+ EK +
Sbjct: 1141 LKKKTKRNIKNTPQSYSIKDHFAVSLQSQDKNDKL----SFTNYNSLEKDIFLNQGEKEL 1196
Query: 515 VENDAAIDMSENTGLQSAHFDYSYLKG---TAIKRKTSLIDSVHTDKMGSKLMRTNASLH 571
N +I+ +N Q+ H S L + TS +++ +K S +H
Sbjct: 1197 QFNHNSINKEKN---QNKHLQISSLTNHDNIIMNNHTSNLNTQQNEKQSSN--HNTIIIH 1251
Query: 572 NNGYSDPNLD----KTIATETDEAKFGANISHLGSYSEIAEKSMER 613
+N + PN K+ T++ + +I+ L S ++ +S+E+
Sbjct: 1252 SNNHQ-PNFTNENVKSNNVSTEQDTYNKHITVLKSTEKLQNQSIEK 1296
Score = 57 (25.1 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 29/131 (22%), Positives = 61/131 (46%)
Query: 240 HALISKFKSYDK--VIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLSCI 297
H +S +S DK + Y+++ F + G+ L F H + K ++ HL I
Sbjct: 1161 HFAVS-LQSQDKNDKLSFTNYNSLEKDIFLNQ--GEKELQFNHNSINKEKNQN-KHLQ-I 1215
Query: 298 SDNIGNDLDFLAKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHLKNFKPESERKKLDLP 357
S ++ N D + +L+ TQ ++ S+++ +++ N+H NF E+ + ++
Sbjct: 1216 S-SLTNH-DNIIMNNHTSNLN--TQQNEKQSSNHNTIIIHSNNHQPNFTNENVKSN-NVS 1270
Query: 358 VQKNLLTKKFT 368
+++ K T
Sbjct: 1271 TEQDTYNKHIT 1281
Score = 54 (24.1 bits), Expect = 9.6e-26, Sum P(3) = 9.6e-26
Identities = 35/151 (23%), Positives = 61/151 (40%)
Query: 468 EHENK---NCTDSVVGKGRTENRKVIVRSSYFLHKQVNKDD----QENKQEKLVVENDAA 520
E++NK NC + + K +T++ SS+ L K+V N Q+ L +++ A
Sbjct: 653 EYKNKTIENCNERI-NKRKTDD----CISSFNLKKKVKTTSAHTSSSNSQDNLTIQHIEA 707
Query: 521 IDMS--------ENTGLQSAHFDYSYLKGTAIKRKTSLIDSVHT--DKMGSKLMRTNASL 570
+D + E + +Y + S+ D+ + +K L N S
Sbjct: 708 LDCNNQNVNDNEEKKNIYENSCNYDETFNSERVNILSMYDNNYQMWEKKDDLLKNNNNSF 767
Query: 571 HNNG----YSDPNLDKTIATETDEAKFGANI 597
H+N Y+D ++KT E K NI
Sbjct: 768 HSNNIMETYNDHYINKTY-DEHSNNKVNINI 797
Score = 41 (19.5 bits), Expect = 3.9e-22, Sum P(3) = 3.9e-22
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 325 FQEVSDNSHLVVGQNSHLKNFKPESERKKLDLPVQKNLLTKK 366
F +S + +V N++ K K + + K +KN+ K
Sbjct: 268 FINISKKTKSIVNSNNNNKKKKKKKNKNKKKTNKKKNMQKSK 309
>UNIPROTKB|Q8IBK1 [details] [associations]
symbol:PF07_0105 "Exonuclease I, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0003677
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 EMBL:AL844506
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10746 RefSeq:XP_001349153.1
ProteinModelPortal:Q8IBK1 IntAct:Q8IBK1 MINT:MINT-1547666
EnsemblProtists:PF07_0105:mRNA GeneID:2655158 KEGG:pfa:PF07_0105
EuPathDB:PlasmoDB:PF3D7_0725000 Uniprot:Q8IBK1
Length = 1347
Score = 275 (101.9 bits), Expect = 5.1e-28, Sum P(3) = 5.1e-28
Identities = 58/196 (29%), Positives = 109/196 (55%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGI LL LK I+ HI + + V VD W+H+G +SC+ ++ ++++
Sbjct: 1 MGISNLLQFLKPIIKNSHISKYKNEVVGVDIMCWIHRGLISCAYDIVTDQYNDSYLNFIE 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAI-ECESEGNSSASYEFY 119
+ + ++ +K + +FDG LP K ++EN ++R+E + E S+ + + E
Sbjct: 61 KMLVPIYNHNIKVVFVFDGEELPEK-KKENMIRKNRREKAKMELQEIISKVKNPRTNEMV 119
Query: 120 QK----AVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLI 175
K A+ +S I + + +++N+ YI++PYEADAQ+++L + I+EDSDL+
Sbjct: 120 LKKCIQAISVSKEIIDSVKEFCRKKNIDYIISPYEADAQLSYLCRMGFISCAISEDSDLL 179
Query: 176 PFGCSRIIFKMDKFGQ 191
+GC R+++K+ G+
Sbjct: 180 VYGCPRVLYKLKNTGE 195
Score = 98 (39.6 bits), Expect = 5.1e-28, Sum P(3) = 5.1e-28
Identities = 27/74 (36%), Positives = 38/74 (51%)
Query: 211 FTKQMLLEMCILSGCDYLQS--LPGMGLKRAHALISKFKSYDKVIKHLKYSTV---SVPP 265
F M L MC+LSGCDY + GMG+K A+ LI + K+ + + H S + P
Sbjct: 333 FNIDMFLTMCVLSGCDYSNDFHITGMGIKTAYNLIFQHKNIENIF-HFLISNDRWRNKIP 391
Query: 266 FYEESFGKAVLTFQ 279
+F K + TFQ
Sbjct: 392 ENLNTFDKLMNTFQ 405
Score = 76 (31.8 bits), Expect = 5.1e-28, Sum P(3) = 5.1e-28
Identities = 55/286 (19%), Positives = 111/286 (38%)
Query: 338 QNSHLKNFKPESERKKLDLPVQKNLLTKKFTTPRISPNHFSPEETSSLSPGEHHTAEASC 397
+N L+N P E +K L KN K + S + E+H S
Sbjct: 1026 KNDLLRN--PLEESRKSSLTSYKNKTPSKNVNSKSQLRITSFFKRIDKKTNENHNMHNST 1083
Query: 398 DISCQSSSRMELETVGNFPHNSSEKNCFASEVPEFSASPSRE-MENERNAEHTSLPQFCR 456
C + + + N + N + + +S S E N N ++ + F +
Sbjct: 1084 QKICNDHNNNPNDNIQN---DKFYNNIYMNSPINYSVEYSEEDYINSFNDNYSDMKTFQK 1140
Query: 457 SIRNPCPALRKEHENKNCTD--SVVGKGRTENRKVIVRSSYFLHKQVNKDDQENKQEKLV 514
+ ++ ++ + D +V + + +N K+ S+ + + KD N+ EK +
Sbjct: 1141 LKKKTKRNIKNTPQSYSIKDHFAVSLQSQDKNDKL----SFTNYNSLEKDIFLNQGEKEL 1196
Query: 515 VENDAAIDMSENTGLQSAHFDYSYLKG---TAIKRKTSLIDSVHTDKMGSKLMRTNASLH 571
N +I+ +N Q+ H S L + TS +++ +K S +H
Sbjct: 1197 QFNHNSINKEKN---QNKHLQISSLTNHDNIIMNNHTSNLNTQQNEKQSSN--HNTIIIH 1251
Query: 572 NNGYSDPNLD----KTIATETDEAKFGANISHLGSYSEIAEKSMER 613
+N + PN K+ T++ + +I+ L S ++ +S+E+
Sbjct: 1252 SNNHQ-PNFTNENVKSNNVSTEQDTYNKHITVLKSTEKLQNQSIEK 1296
Score = 57 (25.1 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 29/131 (22%), Positives = 61/131 (46%)
Query: 240 HALISKFKSYDK--VIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLSCI 297
H +S +S DK + Y+++ F + G+ L F H + K ++ HL I
Sbjct: 1161 HFAVS-LQSQDKNDKLSFTNYNSLEKDIFLNQ--GEKELQFNHNSINKEKNQN-KHLQ-I 1215
Query: 298 SDNIGNDLDFLAKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHLKNFKPESERKKLDLP 357
S ++ N D + +L+ TQ ++ S+++ +++ N+H NF E+ + ++
Sbjct: 1216 S-SLTNH-DNIIMNNHTSNLN--TQQNEKQSSNHNTIIIHSNNHQPNFTNENVKSN-NVS 1270
Query: 358 VQKNLLTKKFT 368
+++ K T
Sbjct: 1271 TEQDTYNKHIT 1281
Score = 54 (24.1 bits), Expect = 9.6e-26, Sum P(3) = 9.6e-26
Identities = 35/151 (23%), Positives = 61/151 (40%)
Query: 468 EHENK---NCTDSVVGKGRTENRKVIVRSSYFLHKQVNKDD----QENKQEKLVVENDAA 520
E++NK NC + + K +T++ SS+ L K+V N Q+ L +++ A
Sbjct: 653 EYKNKTIENCNERI-NKRKTDD----CISSFNLKKKVKTTSAHTSSSNSQDNLTIQHIEA 707
Query: 521 IDMS--------ENTGLQSAHFDYSYLKGTAIKRKTSLIDSVHT--DKMGSKLMRTNASL 570
+D + E + +Y + S+ D+ + +K L N S
Sbjct: 708 LDCNNQNVNDNEEKKNIYENSCNYDETFNSERVNILSMYDNNYQMWEKKDDLLKNNNNSF 767
Query: 571 HNNG----YSDPNLDKTIATETDEAKFGANI 597
H+N Y+D ++KT E K NI
Sbjct: 768 HSNNIMETYNDHYINKTY-DEHSNNKVNINI 797
Score = 41 (19.5 bits), Expect = 3.9e-22, Sum P(3) = 3.9e-22
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 325 FQEVSDNSHLVVGQNSHLKNFKPESERKKLDLPVQKNLLTKK 366
F +S + +V N++ K K + + K +KN+ K
Sbjct: 268 FINISKKTKSIVNSNNNNKKKKKKKNKNKKKTNKKKNMQKSK 309
>FB|FBgn0025832 [details] [associations]
symbol:Fen1 "Flap endonuclease 1" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=IC] [GO:0048256 "flap
endonuclease activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0004519 "endonuclease activity" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] HAMAP:MF_00614 InterPro:IPR003583 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00278 SMART:SM00279 SMART:SM00484
SMART:SM00485 EMBL:AE013599 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0022008 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0004527 GO:GO:0004519
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 EMBL:AL031863
CTD:2237 GeneTree:ENSGT00640000091478 KO:K04799 OMA:DYDSLLF
EMBL:BT100031 PIR:T13692 RefSeq:NP_523765.1 UniGene:Dm.23253
HSSP:O50123 ProteinModelPortal:Q7K7A9 SMR:Q7K7A9 STRING:Q7K7A9
PaxDb:Q7K7A9 PRIDE:Q7K7A9 EnsemblMetazoa:FBtr0087075 GeneID:36887
KEGG:dme:Dmel_CG8648 UCSC:CG8648-RA FlyBase:FBgn0025832
InParanoid:Q7K7A9 OrthoDB:EOG4W0VVR PhylomeDB:Q7K7A9
GenomeRNAi:36887 NextBio:800894 Bgee:Q7K7A9 Uniprot:Q7K7A9
Length = 385
Score = 278 (102.9 bits), Expect = 1.8e-22, P = 1.8e-22
Identities = 81/275 (29%), Positives = 137/275 (49%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDTYSWLHKGALSCSRE-----LCKGL 50
MGI GL L+ + P I+E E G VA+D L++ ++ E G
Sbjct: 1 MGILGLSKLIADLA-PQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGD 59
Query: 51 PTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEG 110
PTS H+ +R L G+KP+ +FDG +K + KRA R+E +A++ ++
Sbjct: 60 PTS-HLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAE-RREEAEKALKAATDA 117
Query: 111 NSSASYE-FYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVIT 169
A E F ++ V ++ A E ++L V Y+ AP EA+AQ L + +V A T
Sbjct: 118 GDDAGIEKFNRRLVRVTKEHAKEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATAT 177
Query: 170 EDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQ 229
ED D + FG ++++ + + + + +K L + +++CIL GCDY +
Sbjct: 178 EDMDALTFGSTKLLRYLT-YSEARKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDYCE 236
Query: 230 SLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVP 264
S+ G+G KRA LI+ ++ + ++ +L S +VP
Sbjct: 237 SIKGIGPKRAIELINTYRDIETILDNLDSSKYTVP 271
>DICTYBASE|DDB_G0284987 [details] [associations]
symbol:repG "XPG" species:44689 "Dictyostelium
discoideum" [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISS] [GO:0000287 "magnesium ion binding"
evidence=IEA;ISS] [GO:0048256 "flap endonuclease activity"
evidence=ISS] [GO:0030145 "manganese ion binding" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA;ISS] [GO:0004527
"exonuclease activity" evidence=IEA;ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 dictyBase:DDB_G0284987 GO:GO:0005739
GO:GO:0005634 GO:GO:0005654 GO:GO:0005730 GenomeReviews:CM000153_GR
GO:GO:0000287 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
EMBL:AAFI02000073 GO:GO:0030145 GO:GO:0004527 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0048256 KO:K04799
OMA:DYDSLLF RefSeq:XP_639977.1 ProteinModelPortal:Q54NU0
STRING:Q54NU0 EnsemblProtists:DDB0231109 GeneID:8624889
KEGG:ddi:DDB_G0284987 InParanoid:Q54NU0 ProtClustDB:PTZ00217
Uniprot:Q54NU0
Length = 384
Score = 267 (99.0 bits), Expect = 7.7e-21, P = 7.7e-21
Identities = 78/277 (28%), Positives = 131/277 (47%)
Query: 1 MGIQGLLPLLK-----SIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLP---- 51
MGI+ L L++ SI I +K G +A+D + L++ ++ + ++ L
Sbjct: 1 MGIKKLTDLIEDNAPTSIKTNI-LKNYFGRIIAIDASTSLYQFLIAMNADVSSALTNQLG 59
Query: 52 -TSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEG 110
T+ H+ +R L G+KPI +FDG +K + KR RKE E G
Sbjct: 60 ETTSHLQGMFYRTIKLISRGIKPIYVFDGSAPVLKSGELAKRQARRKEAKENLKEATEVG 119
Query: 111 NSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITE 170
+ +F ++ + ++ + I++L V + AP EA+AQ + + A +E
Sbjct: 120 TNEEVQKFAKRVITVTRKQNEDCIKLLTLMGVPIVKAPCEAEAQCAEIVKKGKAWATGSE 179
Query: 171 DSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQS 230
D D + G S ++ + F + + + L G T+ +++ IL GCDY S
Sbjct: 180 DMDSLTLG-STVLLRRLFFSEAKKMPILEFELQSVLEGLGLTQDEFIDLSILLGCDYCDS 238
Query: 231 LPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFY 267
+ G+G KRA LI K KS ++VIKHL S +P F+
Sbjct: 239 IKGIGPKRAIELIQKHKSLEEVIKHLDKSKYPLPEFF 275
>UNIPROTKB|Q5ZLN4 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9031 "Gallus
gallus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006284 "base-excision
repair" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0004523 "ribonuclease H activity" evidence=IEA] [GO:0030145
"manganese ion binding" evidence=IEA] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005739 GO:GO:0005654 GO:GO:0005730
GO:GO:0000287 GO:GO:0003677 GO:GO:0006281 GO:GO:0030145
GO:GO:0090305 GO:GO:0004523 GO:GO:0017108 GO:GO:0043137
GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
CTD:2237 GeneTree:ENSGT00640000091478 HOGENOM:HOG000193853
HOVERGEN:HBG000844 KO:K04799 OMA:DYDSLLF OrthoDB:EOG415GDQ
EMBL:AB058602 EMBL:AJ719700 IPI:IPI00598102 RefSeq:NP_001072959.1
UniGene:Gga.4353 ProteinModelPortal:Q5ZLN4 SMR:Q5ZLN4 STRING:Q5ZLN4
PRIDE:Q5ZLN4 Ensembl:ENSGALT00000005734 GeneID:769677
KEGG:gga:769677 InParanoid:Q5ZLN4 NextBio:20919905 Uniprot:Q5ZLN4
Length = 381
Score = 263 (97.6 bits), Expect = 2.3e-20, P = 2.3e-20
Identities = 79/276 (28%), Positives = 131/276 (47%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDT----YSWL---HKGALSCSRELCK 48
MGI GL L+ + P I+E + G VA+D Y +L +GA E +
Sbjct: 1 MGIHGLAKLIADVA-PSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGAEVLQNE--E 57
Query: 49 GLPTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECES 108
G TS H+ +R + G+KP+ +FDG +K + KR R E E +
Sbjct: 58 GETTS-HLMGMFYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRTERRSEAEKHLQEAQE 116
Query: 109 EGNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVI 168
G + +F ++ V ++ E ++L + Y+ AP EA+A L + +V A
Sbjct: 117 AGEEANIEKFSKRLVKVTQQHTDECKKLLMLMGIPYVEAPGEAEASCATLVKAGKVYAAA 176
Query: 169 TEDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYL 228
TED D + FG S ++ + + + N+ L G T + +++CIL GCDY
Sbjct: 177 TEDMDCLTFG-SPVLMRHLTASEAKKLPIQEFHLNRVLQDLGLTWEQFVDLCILLGCDYC 235
Query: 229 QSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVP 264
+S+ G+G KRA LI + K+ +++I+H+ +P
Sbjct: 236 ESIRGIGPKRAVELIKQHKTIEEIIQHIDTKKYPLP 271
>UNIPROTKB|J9PB88 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9615 "Canis lupus
familiaris" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IEA]
[GO:0017108 "5'-flap endonuclease activity" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000287 "magnesium ion binding" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0000287 GO:GO:0006284 GO:GO:0003677
GO:GO:0090305 GO:GO:0017108 GO:GO:0043137 GO:GO:0008409
PANTHER:PTHR11081 SUPFAM:SSF47807 CTD:2237
GeneTree:ENSGT00640000091478 KO:K04799 OMA:DYDSLLF
EMBL:AAEX03011672 RefSeq:XP_533271.1 Ensembl:ENSCAFT00000049322
GeneID:476063 KEGG:cfa:476063 Uniprot:J9PB88
Length = 380
Score = 258 (95.9 bits), Expect = 9.8e-20, P = 9.8e-20
Identities = 83/303 (27%), Positives = 142/303 (46%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDT----YSWL---HKGALSCSRELCK 48
MGIQGL L+ + P I+E + G VA+D Y +L +G E +
Sbjct: 1 MGIQGLAKLIADVA-PSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNE--E 57
Query: 49 GLPTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECES 108
G TS H+ +R + G+KP+ +FDG +K + KR+ R E + + ++
Sbjct: 58 GETTS-HLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQA 116
Query: 109 EGNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVI 168
G +F ++ V ++ E +L + Y+ AP EA+A L + +V A
Sbjct: 117 AGAEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAA 176
Query: 169 TEDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYL 228
TED D + FG S ++ + + + N+ L G ++ +++CIL G DY
Sbjct: 177 TEDMDCLTFG-SPVLMRHLTASEAKKLPIQEFHLNRILQELGLNQEQFVDLCILLGSDYC 235
Query: 229 QSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKT 288
+S+ G+G KRA LI K KS +++++ L + VP + +A F V DP++
Sbjct: 236 ESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHK--EAQQLFLEPEVLDPES 293
Query: 289 EDI 291
++
Sbjct: 294 VEL 296
>RGD|621821 [details] [associations]
symbol:Fen1 "flap structure-specific endonuclease 1"
species:10116 "Rattus norvegicus" [GO:0000287 "magnesium ion
binding" evidence=IEA;ISO] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0004523 "ribonuclease H activity"
evidence=IEA;ISO] [GO:0004527 "exonuclease activity"
evidence=ISO;NAS] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0006260 "DNA replication" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0007613 "memory" evidence=IMP] [GO:0008409 "5'-3'
exonuclease activity" evidence=IEA;ISO] [GO:0017108 "5'-flap
endonuclease activity" evidence=IEA;ISO] [GO:0030145 "manganese ion
binding" evidence=IEA;ISO] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA;ISO] [GO:0048256 "flap endonuclease
activity" evidence=ISO] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
RGD:621821 GO:GO:0005739 GO:GO:0005634 GO:GO:0005654 GO:GO:0005730
GO:GO:0000287 GO:GO:0003677 GO:GO:0007613 GO:GO:0006281
GO:GO:0030145 GO:GO:0004527 GO:GO:0004523 GO:GO:0017108
GO:GO:0043137 GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 EMBL:CH473953 CTD:2237 GeneTree:ENSGT00640000091478
HOGENOM:HOG000193853 HOVERGEN:HBG000844 KO:K04799 OMA:DYDSLLF
OrthoDB:EOG415GDQ EMBL:AF281018 EMBL:BC083630 IPI:IPI00199986
RefSeq:NP_445882.1 UniGene:Rn.16664 ProteinModelPortal:Q5XIP6
SMR:Q5XIP6 STRING:Q5XIP6 Ensembl:ENSRNOT00000027842 GeneID:84490
KEGG:rno:84490 InParanoid:Q9JHW7 NextBio:617038
Genevestigator:Q5XIP6 Uniprot:Q5XIP6
Length = 380
Score = 258 (95.9 bits), Expect = 9.8e-20, P = 9.8e-20
Identities = 84/303 (27%), Positives = 142/303 (46%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDT----YSWL---HKGALSCSRELCK 48
MGIQGL L+ + P I+E + G VA+D Y +L +G E +
Sbjct: 1 MGIQGLAKLIADVA-PSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNE--E 57
Query: 49 GLPTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECES 108
G TS H+ +R + G+KP+ IFDG +K + KR+ R E + + +
Sbjct: 58 GETTS-HLMGMFYRTIRMMENGIKPVYIFDGKPPQLKSGELAKRSERRAEAEKQLQQAQE 116
Query: 109 EGNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVI 168
G +F ++ V ++ E +L + Y+ AP EA+A LA + +V A
Sbjct: 117 AGAEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAA 176
Query: 169 TEDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYL 228
TED D + FG S ++ + + + ++ L G ++ +++CIL G DY
Sbjct: 177 TEDMDCLTFG-SPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYC 235
Query: 229 QSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKT 288
+S+ G+G KRA LI K KS +++++ L S VP + + + F V DP++
Sbjct: 236 ESVRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEARQL--FLEPEVLDPES 293
Query: 289 EDI 291
++
Sbjct: 294 VEL 296
>UNIPROTKB|Q58DH8 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9913 "Bos taurus"
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0030145
"manganese ion binding" evidence=IEA] [GO:0004523 "ribonuclease H
activity" evidence=IEA] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005739 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0003677 GO:GO:0006281 GO:GO:0030145 GO:GO:0090305
GO:GO:0004523 GO:GO:0017108 GO:GO:0043137 GO:GO:0008409
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 CTD:2237
GeneTree:ENSGT00640000091478 HOGENOM:HOG000193853
HOVERGEN:HBG000844 KO:K04799 OMA:DYDSLLF OrthoDB:EOG415GDQ
EMBL:BT021527 EMBL:BT021540 EMBL:BT021619 EMBL:BT021755
EMBL:BC105255 IPI:IPI00693879 RefSeq:NP_001030285.1
UniGene:Bt.10503 ProteinModelPortal:Q58DH8 SMR:Q58DH8 STRING:Q58DH8
Ensembl:ENSBTAT00000000071 GeneID:616242 KEGG:bta:616242
InParanoid:Q58DH8 NextBio:20900037 Uniprot:Q58DH8
Length = 380
Score = 257 (95.5 bits), Expect = 1.3e-19, P = 1.3e-19
Identities = 83/303 (27%), Positives = 143/303 (47%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDT----YSWL---HKGALSCSRELCK 48
MGIQGL L+ + P I+E + G VA+D Y +L +G E +
Sbjct: 1 MGIQGLAKLIADVA-PSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNE--E 57
Query: 49 GLPTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECES 108
G TS H+ +R + G+KP+ +FDG +K + KR+ R E + E ++
Sbjct: 58 GETTS-HLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQEAQA 116
Query: 109 EGNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVI 168
G + +F ++ V ++ E +L + Y+ AP EA+A L + +V A
Sbjct: 117 AGAEAEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAA 176
Query: 169 TEDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYL 228
TED D + FG S ++ + + + ++ L G ++ +++CIL G DY
Sbjct: 177 TEDMDCLTFG-SPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYC 235
Query: 229 QSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKT 288
+S+ G+G KRA LI K KS +++++ L + VP + +A F V DP++
Sbjct: 236 ESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHK--EAQQLFLEPEVLDPES 293
Query: 289 EDI 291
++
Sbjct: 294 VEL 296
>UNIPROTKB|P39748 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9606 "Homo
sapiens" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0007613 "memory" evidence=IEA] [GO:0030145 "manganese ion
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0048015 "phosphatidylinositol-mediated signaling" evidence=NAS]
[GO:0006260 "DNA replication" evidence=NAS] [GO:0006281 "DNA
repair" evidence=NAS;TAS] [GO:0017108 "5'-flap endonuclease
activity" evidence=IDA;IMP] [GO:0003677 "DNA binding" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008409 "5'-3' exonuclease
activity" evidence=IDA] [GO:0004523 "ribonuclease H activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0004527 "exonuclease
activity" evidence=TAS] [GO:0008309 "double-stranded DNA specific
exodeoxyribonuclease activity" evidence=TAS] [GO:0003684 "damaged
DNA binding" evidence=TAS] [GO:0003690 "double-stranded DNA
binding" evidence=TAS] [GO:0004519 "endonuclease activity"
evidence=TAS] [GO:0006302 "double-strand break repair"
evidence=TAS] [GO:0009650 "UV protection" evidence=TAS] [GO:0000084
"S phase of mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic
cell cycle" evidence=TAS] [GO:0000722 "telomere maintenance via
recombination" evidence=TAS] [GO:0000723 "telomere maintenance"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271
"DNA strand elongation involved in DNA replication" evidence=TAS]
[GO:0006284 "base-excision repair" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] Reactome:REACT_216 HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
EMBL:AC004770 GO:GO:0005739 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0005730 GO:GO:0000287 GO:GO:0006284 GO:GO:0003684
GO:GO:0030145 GO:GO:0003690 GO:GO:0006302 GO:GO:0048015
GO:GO:0000084 GO:GO:0004523 GO:GO:0000722 GO:GO:0009650
GO:GO:0017108 Reactome:REACT_383 GO:GO:0043137 GO:GO:0008409
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0032201
CTD:2237 HOGENOM:HOG000193853 HOVERGEN:HBG000844 KO:K04799
OMA:DYDSLLF OrthoDB:EOG415GDQ EMBL:X76771 EMBL:L37374 EMBL:AF523117
EMBL:BC000323 IPI:IPI00026215 PIR:A56531 RefSeq:NP_004102.1
UniGene:Hs.409065 UniGene:Hs.741166 PDB:1U7B PDB:1UL1 PDB:3Q8K
PDB:3Q8L PDB:3Q8M PDB:3UVU PDBsum:1U7B PDBsum:1UL1 PDBsum:3Q8K
PDBsum:3Q8L PDBsum:3Q8M PDBsum:3UVU ProteinModelPortal:P39748
SMR:P39748 DIP:DIP-24216N IntAct:P39748 MINT:MINT-5004212
STRING:P39748 PhosphoSite:P39748 DMDM:729475 PaxDb:P39748
PeptideAtlas:P39748 PRIDE:P39748 DNASU:2237 Ensembl:ENST00000305885
GeneID:2237 KEGG:hsa:2237 UCSC:uc001nsg.3 GeneCards:GC11P061560
HGNC:HGNC:3650 HPA:CAB002262 HPA:HPA006748 MIM:600393
neXtProt:NX_P39748 PharmGKB:PA28090 InParanoid:P39748
PhylomeDB:P39748 BindingDB:P39748 ChEMBL:CHEMBL5027 ChiTaRS:FEN1
EvolutionaryTrace:P39748 GenomeRNAi:2237 NextBio:9055
ArrayExpress:P39748 Bgee:P39748 CleanEx:HS_FEN1
Genevestigator:P39748 GermOnline:ENSG00000168496 GO:GO:0008309
Uniprot:P39748
Length = 380
Score = 252 (93.8 bits), Expect = 5.5e-19, P = 5.5e-19
Identities = 82/303 (27%), Positives = 142/303 (46%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDT----YSWL---HKGALSCSRELCK 48
MGIQGL L+ + P I+E + G VA+D Y +L +G E +
Sbjct: 1 MGIQGLAKLIADVA-PSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNE--E 57
Query: 49 GLPTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECES 108
G TS H+ +R + G+KP+ +FDG +K + KR+ R E + + ++
Sbjct: 58 GETTS-HLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQA 116
Query: 109 EGNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVI 168
G +F ++ V ++ E +L + Y+ AP EA+A L + +V A
Sbjct: 117 AGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAA 176
Query: 169 TEDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYL 228
TED D + FG S ++ + + + ++ L G ++ +++CIL G DY
Sbjct: 177 TEDMDCLTFG-SPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYC 235
Query: 229 QSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKT 288
+S+ G+G KRA LI K KS +++++ L + VP + +A F V DP++
Sbjct: 236 ESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHK--EAHQLFLEPEVLDPES 293
Query: 289 EDI 291
++
Sbjct: 294 VEL 296
>UNIPROTKB|F1RKS3 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9823 "Sus scrofa"
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0030145
"manganese ion binding" evidence=IEA] [GO:0004523 "ribonuclease H
activity" evidence=IEA] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005739 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0006284 GO:GO:0003677 GO:GO:0030145 GO:GO:0090305
GO:GO:0004523 GO:GO:0017108 GO:GO:0043137 GO:GO:0008409
PANTHER:PTHR11081 SUPFAM:SSF47807 GeneTree:ENSGT00640000091478
KO:K04799 OMA:DYDSLLF EMBL:CU914654 RefSeq:XP_003122675.1
Ensembl:ENSSSCT00000030503 GeneID:100517749 KEGG:ssc:100517749
Uniprot:F1RKS3
Length = 380
Score = 251 (93.4 bits), Expect = 7.2e-19, P = 7.2e-19
Identities = 83/303 (27%), Positives = 141/303 (46%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDT----YSWL---HKGALSCSRELCK 48
MGIQGL L+ + P I+E + G VA+D Y +L +G E +
Sbjct: 1 MGIQGLAKLIADVA-PGAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNE--E 57
Query: 49 GLPTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECES 108
G TS H+ +R + G+KP+ +FDG +K + KR+ R E + + ++
Sbjct: 58 GETTS-HLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQA 116
Query: 109 EGNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVI 168
G +F ++ V ++ E +L V Y+ AP EA+A L + +V A
Sbjct: 117 AGAGEEVEKFTKRLVKVTKQHNDECKHLLSLMGVPYLDAPSEAEASCAALVKAGKVYAAA 176
Query: 169 TEDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYL 228
TED D + FG S ++ + + + ++ L G ++ +++CIL G DY
Sbjct: 177 TEDMDCLTFG-SPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYC 235
Query: 229 QSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKT 288
+S+ G+G KRA LI K KS +++++ L + VP + +A F V DP+
Sbjct: 236 ESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHK--EAQQLFLEPEVLDPEA 293
Query: 289 EDI 291
++
Sbjct: 294 VEL 296
>UNIPROTKB|P70040 [details] [associations]
symbol:fen1-a "Flap endonuclease 1-A" species:8355 "Xenopus
laevis" [GO:0005634 "nucleus" evidence=IDA] [GO:0006260 "DNA
replication" evidence=IPI] [GO:0006284 "base-excision repair"
evidence=IDA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IDA] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005634
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0006284
GO:GO:0003677 GO:GO:0006260 GO:GO:0004527 GO:GO:0017108
PANTHER:PTHR11081 SUPFAM:SSF47807 HOVERGEN:HBG000844 KO:K04799
EMBL:AF036327 EMBL:U64563 EMBL:AF065397 EMBL:BC169761 EMBL:BC169765
EMBL:BC124977 RefSeq:NP_001080960.1 UniGene:Xl.440
ProteinModelPortal:P70040 SMR:P70040 IntAct:P70040 PRIDE:P70040
GeneID:394303 KEGG:xla:394303 CTD:394303 Xenbase:XB-GENE-955523
Uniprot:P70040
Length = 382
Score = 245 (91.3 bits), Expect = 4.0e-18, P = 4.0e-18
Identities = 94/347 (27%), Positives = 158/347 (45%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDTYSWLHKGALSCSRE---LC--KGL 50
MGI GL L+ + P IKE + G VAVD +++ ++ ++ L +G
Sbjct: 1 MGIHGLAKLIADVA-PAAIKEHDIKSYFGRKVAVDASMCIYQFLIAVRQDGNTLQNEEGE 59
Query: 51 PTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEG 110
TS + + ++ H G+KP+ +FDG MK + KR+ R E + +E E
Sbjct: 60 TTSHLMGMFYRTIRMVEH-GIKPVYVFDGKPPQMKSGELAKRSERRAE-AEKLLEAAEEA 117
Query: 111 NSSASYE-FYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVIT 169
+ E F ++ V ++ E ++L + Y+ AP EA+A L + +V A T
Sbjct: 118 GEVENIEKFTKRLVKVTKQHNEECKKLLTLMGIPYVDAPCEAEATCAALVKAGKVYAAAT 177
Query: 170 EDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQ 229
ED D + FG + ++ + + + N+ + G T + +++CIL G DY +
Sbjct: 178 EDMDALTFG-TPVLLRHLTASEAKKLPIQEFHLNRVIQDIGITHEQFVDLCILLGSDYCE 236
Query: 230 SLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPP--FYEES---F--GKAVLT-FQHQ 281
++ G+G KRA LI + K+ D++I ++ VP ++E+ F + V T
Sbjct: 237 TIRGIGPKRAIDLIRQHKTIDEIIDNIDLKKYPVPENWLHKEAKHLFLEPEVVDTDITEL 296
Query: 282 RVYDPKTEDIVHLSC-----ISDNIGNDLDFLAK---GIAIGDLDPF 320
+ +P E +V C D I N LAK G G LD F
Sbjct: 297 KWIEPDEEGLVAFMCGEKQFSEDRIRNGAKKLAKNRQGSTQGRLDDF 343
>MGI|MGI:102779 [details] [associations]
symbol:Fen1 "flap structure specific endonuclease 1"
species:10090 "Mus musculus" [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=ISO;IDA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004523 "ribonuclease H activity"
evidence=ISO] [GO:0004527 "exonuclease activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=ISO;TAS] [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0007613 "memory" evidence=ISO]
[GO:0008409 "5'-3' exonuclease activity" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=ISO] [GO:0030145 "manganese ion
binding" evidence=IDA] [GO:0043137 "DNA replication, removal of RNA
primer" evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0048256 "flap endonuclease activity" evidence=IDA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 MGI:MGI:102779 GO:GO:0005739
GO:GO:0005634 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0030145
GO:GO:0004527 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0048256 HOVERGEN:HBG000844 OrthoDB:EOG415GDQ ChiTaRS:FEN1
EMBL:L26320 IPI:IPI00990732 PIR:A53730 UniGene:Mm.2952
ProteinModelPortal:P39749 SMR:P39749 STRING:P39749 PaxDb:P39749
PRIDE:P39749 InParanoid:P39749 CleanEx:MM_FEN1
Genevestigator:P39749 GermOnline:ENSMUSG00000024742 Uniprot:P39749
Length = 378
Score = 241 (89.9 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 82/303 (27%), Positives = 141/303 (46%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDT----YSWL---HKGALSCSRELCK 48
MGI GL L+ + P I+E + G VA+D Y +L +G E +
Sbjct: 1 MGIHGLAKLIADVA-PSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNE--E 57
Query: 49 GLPTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECES 108
G TS + +R + + G+KP+ +FDG +K + KR+ R E + + +
Sbjct: 58 GETTS--LMGMFYRTIRMEN-GIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQE 114
Query: 109 EGNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVI 168
G +F ++ V ++ E +L + Y+ AP EA+A LA + +V A
Sbjct: 115 AGMEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAA 174
Query: 169 TEDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYL 228
TED D + FG S ++ + + + ++ L G ++ +++CIL G DY
Sbjct: 175 TEDMDCLTFG-SPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYC 233
Query: 229 QSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKT 288
+S+ G+G KRA LI K KS +++++ L S VP + +A F V DP++
Sbjct: 234 ESIRGIGAKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHK--EAQQLFLEPEVVDPES 291
Query: 289 EDI 291
++
Sbjct: 292 VEL 294
>UNIPROTKB|P70054 [details] [associations]
symbol:fen1-b "Flap endonuclease 1-B" species:8355 "Xenopus
laevis" [GO:0005634 "nucleus" evidence=IDA] [GO:0006260 "DNA
replication" evidence=IPI] [GO:0006284 "base-excision repair"
evidence=ISS] [GO:0017108 "5'-flap endonuclease activity"
evidence=IDA] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005634
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0006284
GO:GO:0003677 GO:GO:0006260 GO:GO:0004527 GO:GO:0017108
PANTHER:PTHR11081 SUPFAM:SSF47807 HOVERGEN:HBG000844 KO:K04799
EMBL:U68141 EMBL:BC169390 EMBL:BC169394 RefSeq:NP_001080984.1
UniGene:Xl.530 ProteinModelPortal:P70054 SMR:P70054 GeneID:394311
KEGG:xla:394311 CTD:394311 Xenbase:XB-GENE-6254462 Uniprot:P70054
Length = 382
Score = 237 (88.5 bits), Expect = 3.6e-17, P = 3.6e-17
Identities = 72/275 (26%), Positives = 132/275 (48%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDTYSWLHKGALSCSRE--LCKGLP-- 51
MGI GL L+ + P IKE + G VAVD +++ ++ ++ + +
Sbjct: 1 MGIHGLAKLIADVA-PAAIKEHDIKSYFGRKVAVDASMCIYQFLIAVRQDGNMLQNEEGE 59
Query: 52 TSRHIDYCMHR-VNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEG 110
T+ H+ +R + +L H G+KP+ +FDG MK + KR+ R E + +E E
Sbjct: 60 TTSHLMGMFYRTIRMLEH-GIKPVYVFDGKPPQMKSGELAKRSERRAE-AEKLLEAAEEA 117
Query: 111 NSSASYE-FYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVIT 169
+ E F ++ V ++ E ++L + Y+ AP EA+A L + +V A T
Sbjct: 118 GEVENIEKFNKRLVKVTKQHNEECKKLLSLMGIPYVDAPCEAEATCAALVKAGKVYAAAT 177
Query: 170 EDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQ 229
ED D + FG + ++ + + + N+ G + +++CIL G DY +
Sbjct: 178 EDMDALTFG-TPVLLRHLTASEAKKLPIQEFHLNRVFQDIGINHEQFVDLCILLGSDYCE 236
Query: 230 SLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVP 264
++ G+G KRA LI + K+ +++I ++ +P
Sbjct: 237 TIRGIGPKRAIDLIRQHKTIEEIIDNIDLKKYPIP 271
>UNIPROTKB|A4QS18 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 GO:GO:0004519
EMBL:CM001234 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K04799 OrthoDB:EOG41VPBP RefSeq:XP_003716519.1 STRING:A4QS18
EnsemblFungi:MGG_03419T0 GeneID:2676517 KEGG:mgr:MGG_03419
Uniprot:A4QS18
Length = 394
Score = 232 (86.7 bits), Expect = 1.6e-16, P = 1.6e-16
Identities = 75/268 (27%), Positives = 131/268 (48%)
Query: 1 MGIQGLLPLLKSIMIPIHIK--ELE---GCCVAVDT----YSWLHKGALSCSRELCKGLP 51
MGI+ L ++K P IK E++ G VA+D YS+L A+ + E+
Sbjct: 1 MGIKQLFTIIKE-NAPAAIKTGEIKNQFGRKVAIDASMSIYSFLI--AVRSNGEMLTNED 57
Query: 52 --TSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESE 109
T+ H+ +R + G+KP+ +FDG +K + +R + ++E L E
Sbjct: 58 GQTTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELARRYQRKQEALEGLEEARET 117
Query: 110 GNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVIT 169
G + +F ++ V ++ E Q+LK + YI+AP EA+AQ LA + +V A +
Sbjct: 118 GTAEDVEKFSRRTVRVTREHNEECRQLLKLMGIPYIIAPTEAEAQCAVLARAGKVFAAAS 177
Query: 170 EDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQ 229
ED D + F S I+ + F + + + +K L ++ +++CIL GCDYL
Sbjct: 178 EDMDTLCFD-SPILLRHLTFSEARKEPIQEIHVDKVLEGLDMDRKQFVDLCILLGCDYLD 236
Query: 230 SLPGMGLKRAHALISKFKSYDKVIKHLK 257
+P +G A LI + S + +++ +K
Sbjct: 237 PIPKVGPSTALKLIREHGSLETIVEKMK 264
Score = 221 (82.9 bits), Expect = 2.9e-15, P = 2.9e-15
Identities = 84/337 (24%), Positives = 146/337 (43%)
Query: 52 TSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGN 111
T+ H+ +R + G+KP+ +FDG +K + +R + ++E L E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELARRYQRKQEALEGLEEARETGT 119
Query: 112 SSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITED 171
+ +F ++ V ++ E Q+LK + YI+AP EA+AQ LA + +V A +ED
Sbjct: 120 AEDVEKFSRRTVRVTREHNEECRQLLKLMGIPYIIAPTEAEAQCAVLARAGKVFAAASED 179
Query: 172 SDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSL 231
D + F S I+ + F + + + +K L ++ +++CIL GCDYL +
Sbjct: 180 MDTLCFD-SPILLRHLTFSEARKEPIQEIHVDKVLEGLDMDRKQFVDLCILLGCDYLDPI 238
Query: 232 PGMGLKRAHALISKFKSYDKVIKHLKYSTV--SVP---PFYEES---FGKAVLTFQHQ-- 281
P +G A LI + S + +++ +K + +VP PF + F AV H
Sbjct: 239 PKVGPSTALKLIREHGSLETIVEKMKKGELKYTVPEDWPFEDARDLFFNPAVHPADHPDC 298
Query: 282 --RVYDPKTEDIVHLSCISDNIGNDL---DFLAKGIAIGDLDPFTQLP--FQEVSDNSHL 334
+ P E +V D L A+G +L F+ V+ +
Sbjct: 299 NFKWEKPDVEGLVKYLVTEKGFSEDRVRPGALRLEKALGTSQQ-QRLEGFFKPVARTAE- 356
Query: 335 VVGQNSHLKNFKPESERKKLDLPVQKNLLTKKFTTPR 371
Q +H + + ++E K L +K K PR
Sbjct: 357 --EQKAHKRKLEVKAEEAKKKLKAEKKEKAKAKARPR 391
>WB|WBGene00000794 [details] [associations]
symbol:crn-1 species:6239 "Caenorhabditis elegans"
[GO:0006281 "DNA repair" evidence=IEA;TAS] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0016788
"hydrolase activity, acting on ester bonds" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0001703 "gastrulation with mouth forming first" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0006309 "apoptotic DNA fragmentation" evidence=IGI;IDA]
[GO:0006260 "DNA replication" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0048256 "flap endonuclease activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040010
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0040011 GO:GO:0040035
GO:GO:0004527 GO:GO:0006309 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0001703 GO:GO:0048256
GeneTree:ENSGT00640000091478 HOGENOM:HOG000193853 KO:K04799
OMA:DYDSLLF EMBL:AY303575 EMBL:FO081580 RefSeq:NP_491168.1
UniGene:Cel.6649 HSSP:O29975 ProteinModelPortal:Q9N3T2 SMR:Q9N3T2
DIP:DIP-26974N IntAct:Q9N3T2 MINT:MINT-226245 STRING:Q9N3T2
PaxDb:Q9N3T2 EnsemblMetazoa:Y47G6A.8 GeneID:171917
KEGG:cel:CELE_Y47G6A.8 UCSC:Y47G6A.8 CTD:171917 WormBase:Y47G6A.8
InParanoid:Q9N3T2 NextBio:873233 Uniprot:Q9N3T2
Length = 382
Score = 229 (85.7 bits), Expect = 3.1e-16, P = 3.1e-16
Identities = 75/304 (24%), Positives = 148/304 (48%)
Query: 1 MGIQGLLPLLK-SIMIPIHIKELE---GCCVAVDTYSWLHKGALSCSRE----LCKGLPT 52
MGI+GL ++ + I + E++ G VA+D L++ ++ ++ + T
Sbjct: 1 MGIKGLSQVIADNAPSAIKVNEMKAFFGRTVAIDASMCLYQFLIAVRQDGSQLQSEDGET 60
Query: 53 SRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNS 112
+ H+ ++R + GVKP+ +FDG MK + KR+ R E E + +G+
Sbjct: 61 TSHLMGMLNRTVRMFENGVKPVYVFDGKPPDMKGGELEKRSERRAEAEKALTEAKEKGDV 120
Query: 113 SASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDS 172
+ +F ++ V ++ E ++L + + AP EA+AQ L + +V +TED
Sbjct: 121 KEAEKFERRLVKVTKQQNDEAKRLLGLMGIPVVEAPCEAEAQCAHLVKAGKVFGTVTEDM 180
Query: 173 DLIPFGCSRIIFK--MDKFGQGV---EFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDY 227
D + FG S ++ + + + + EF S+ + LS F +++CIL GCDY
Sbjct: 181 DALTFG-STVLLRHFLAPVAKKIPIKEFNLSLALEEMKLSVEEF-----IDLCILLGCDY 234
Query: 228 LQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPK 287
++ G+G K+A LI + K+ + +++++ + PP + + +A F + V P+
Sbjct: 235 CGTIRGVGPKKAVELIRQHKNIETILENIDQN--KYPPPEDWPYKRARELFLNPEVTKPE 292
Query: 288 TEDI 291
++
Sbjct: 293 EVEL 296
>GENEDB_PFALCIPARUM|PFD0420c [details] [associations]
symbol:PFD0420c "flap exonuclease, putative"
species:5833 "Plasmodium falciparum" [GO:0004520
"endodeoxyribonuclease activity" evidence=ISS] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005739 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0004527 EMBL:AL844503 GO:GO:0004520 PANTHER:PTHR11081
SUPFAM:SSF47807 HSSP:O93634 HOGENOM:HOG000193853 KO:K04799
ProtClustDB:PTZ00217 EMBL:AF093702 RefSeq:XP_001351399.1
ProteinModelPortal:Q7K734 IntAct:Q7K734 MINT:MINT-1729073
EnsemblProtists:PFD0420c:mRNA GeneID:812356
GenomeReviews:AL844503_GR KEGG:pfa:PFD0420c
EuPathDB:PlasmoDB:PF3D7_0408500 OMA:HTININS Uniprot:Q7K734
Length = 672
Score = 227 (85.0 bits), Expect = 4.0e-16, Sum P(2) = 4.0e-16
Identities = 84/311 (27%), Positives = 139/311 (44%)
Query: 1 MGIQGLLPLLK----SIMIPIHIKELEGCCVAVDTYSWLHKGALSC-SRELCKGLP---- 51
MGI+GL + + + I I+ L G +A+D L++ ++ E L
Sbjct: 1 MGIKGLTKFIADAAPNAIKEIKIESLMGRIIAIDASMSLYQFIIAIRDSEQYGNLTNESG 60
Query: 52 -TSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEG 110
T+ HI M R L G+KPI +FDG +K + KR R++ + + EG
Sbjct: 61 ETTSHISGLMSRSIRLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEEG 120
Query: 111 NSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITE 170
N + + V ++ E ++L + I AP EA++Q FL A TE
Sbjct: 121 NLEEIKKQSGRTVRVTRKQNEEAKKLLTLMGIPIIEAPCEAESQCAFLTKYNLAHATATE 180
Query: 171 DSDLIPFGCSRIIFKMDK---FGQGVEFQCS-----MLQKNKDLSFGGFTKQM--LLEMC 220
D+D + FG +I ++ Q S + + N + G M ++ C
Sbjct: 181 DADALVFGTKILIRNLNANATSNQNKNKNNSKRGYILTEINLEQVLKGLNLTMDEFIDFC 240
Query: 221 ILSGCDYLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQH 280
IL GCDY ++ G+G K A+ LI ++ +K+I+++ + VP + F +A +F +
Sbjct: 241 ILCGCDYCDTIKGIGSKTAYNLIKEYNCIEKIIENIDQNKYQVPSNFR--FQEARKSFIN 298
Query: 281 QRVYDPKTEDI 291
V PK EDI
Sbjct: 299 PNVL-PK-EDI 307
Score = 55 (24.4 bits), Expect = 4.0e-16, Sum P(2) = 4.0e-16
Identities = 46/234 (19%), Positives = 93/234 (39%)
Query: 364 TKKFTTPRISPNHFSPEETSSLSPGEHHTAEASCDISCQSSSRMELETVG-NFPHNSSEK 422
TKK T ++ E+T G+ D + Q + + ++E N H E+
Sbjct: 361 TKKST--KLIVEETKKEQTLPARKGKKRPTAG--DKNKQKAVKRKIEQANANGHHKMKEE 416
Query: 423 NCFASEVPEFSASPSREMENERNAEHTSLPQFCRSI---RNPCPALRKEHE-NKNCT--- 475
N S E + + ++NE+N + +++ +N K+ E NK+
Sbjct: 417 N--KSVDNEKNEDGIKSVDNEKNEDGIKSVDDEKNLDDEKNLDDEKNKDDEKNKDDEKNK 474
Query: 476 DSVVGKGRTENRKVIVRSSYFLHKQVNKDDQENKQEKLVVENDAAIDMSE-NTGLQSAHF 534
D K +N+ +S + D+E++ ++ +D + N L S
Sbjct: 475 DDEKNKDDEKNKDDEKKSLDNFSSNLFDSDKESESGNIIKNEKQNMDDEKINDNLPSLFG 534
Query: 535 DYSYLKGTAIKRKTSLIDSVHTDKMGSKLMRTNASLHNNGYSDPNLDKTIATET 588
D+S ++ T K S I++ + + S N ++ NN ++ + + T + T
Sbjct: 535 DHSRIRHTENKDNISDINNNNNNNNSSS---NNNNISNNHFNSVSSNSTFNSST 585
Score = 43 (20.2 bits), Expect = 7.1e-15, Sum P(2) = 7.1e-15
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 324 PFQEVSDNSHLVVGQNSHLKNFKPESERKKLDLPVQKNLL 363
P +E S NS+ + N+H N + K P+ N L
Sbjct: 598 PLKEDSPNSYNNIKNNNHTININSQINNHKE--PISNNNL 635
>UNIPROTKB|Q7K734 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:36329 "Plasmodium
falciparum 3D7" [GO:0004520 "endodeoxyribonuclease activity"
evidence=ISS] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0004527 EMBL:AL844503 GO:GO:0004520
PANTHER:PTHR11081 SUPFAM:SSF47807 HSSP:O93634 HOGENOM:HOG000193853
KO:K04799 ProtClustDB:PTZ00217 EMBL:AF093702 RefSeq:XP_001351399.1
ProteinModelPortal:Q7K734 IntAct:Q7K734 MINT:MINT-1729073
EnsemblProtists:PFD0420c:mRNA GeneID:812356
GenomeReviews:AL844503_GR KEGG:pfa:PFD0420c
EuPathDB:PlasmoDB:PF3D7_0408500 OMA:HTININS Uniprot:Q7K734
Length = 672
Score = 227 (85.0 bits), Expect = 4.0e-16, Sum P(2) = 4.0e-16
Identities = 84/311 (27%), Positives = 139/311 (44%)
Query: 1 MGIQGLLPLLK----SIMIPIHIKELEGCCVAVDTYSWLHKGALSC-SRELCKGLP---- 51
MGI+GL + + + I I+ L G +A+D L++ ++ E L
Sbjct: 1 MGIKGLTKFIADAAPNAIKEIKIESLMGRIIAIDASMSLYQFIIAIRDSEQYGNLTNESG 60
Query: 52 -TSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEG 110
T+ HI M R L G+KPI +FDG +K + KR R++ + + EG
Sbjct: 61 ETTSHISGLMSRSIRLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEEG 120
Query: 111 NSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITE 170
N + + V ++ E ++L + I AP EA++Q FL A TE
Sbjct: 121 NLEEIKKQSGRTVRVTRKQNEEAKKLLTLMGIPIIEAPCEAESQCAFLTKYNLAHATATE 180
Query: 171 DSDLIPFGCSRIIFKMDK---FGQGVEFQCS-----MLQKNKDLSFGGFTKQM--LLEMC 220
D+D + FG +I ++ Q S + + N + G M ++ C
Sbjct: 181 DADALVFGTKILIRNLNANATSNQNKNKNNSKRGYILTEINLEQVLKGLNLTMDEFIDFC 240
Query: 221 ILSGCDYLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQH 280
IL GCDY ++ G+G K A+ LI ++ +K+I+++ + VP + F +A +F +
Sbjct: 241 ILCGCDYCDTIKGIGSKTAYNLIKEYNCIEKIIENIDQNKYQVPSNFR--FQEARKSFIN 298
Query: 281 QRVYDPKTEDI 291
V PK EDI
Sbjct: 299 PNVL-PK-EDI 307
Score = 55 (24.4 bits), Expect = 4.0e-16, Sum P(2) = 4.0e-16
Identities = 46/234 (19%), Positives = 93/234 (39%)
Query: 364 TKKFTTPRISPNHFSPEETSSLSPGEHHTAEASCDISCQSSSRMELETVG-NFPHNSSEK 422
TKK T ++ E+T G+ D + Q + + ++E N H E+
Sbjct: 361 TKKST--KLIVEETKKEQTLPARKGKKRPTAG--DKNKQKAVKRKIEQANANGHHKMKEE 416
Query: 423 NCFASEVPEFSASPSREMENERNAEHTSLPQFCRSI---RNPCPALRKEHE-NKNCT--- 475
N S E + + ++NE+N + +++ +N K+ E NK+
Sbjct: 417 N--KSVDNEKNEDGIKSVDNEKNEDGIKSVDDEKNLDDEKNLDDEKNKDDEKNKDDEKNK 474
Query: 476 DSVVGKGRTENRKVIVRSSYFLHKQVNKDDQENKQEKLVVENDAAIDMSE-NTGLQSAHF 534
D K +N+ +S + D+E++ ++ +D + N L S
Sbjct: 475 DDEKNKDDEKNKDDEKKSLDNFSSNLFDSDKESESGNIIKNEKQNMDDEKINDNLPSLFG 534
Query: 535 DYSYLKGTAIKRKTSLIDSVHTDKMGSKLMRTNASLHNNGYSDPNLDKTIATET 588
D+S ++ T K S I++ + + S N ++ NN ++ + + T + T
Sbjct: 535 DHSRIRHTENKDNISDINNNNNNNNSSS---NNNNISNNHFNSVSSNSTFNSST 585
Score = 43 (20.2 bits), Expect = 7.1e-15, Sum P(2) = 7.1e-15
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 324 PFQEVSDNSHLVVGQNSHLKNFKPESERKKLDLPVQKNLL 363
P +E S NS+ + N+H N + K P+ N L
Sbjct: 598 PLKEDSPNSYNNIKNNNHTININSQINNHKE--PISNNNL 635
>ZFIN|ZDB-GENE-031112-11 [details] [associations]
symbol:fen1 "flap structure-specific endonuclease 1"
species:7955 "Danio rerio" [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0060041 "retina development in camera-type eye"
evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 ZFIN:ZDB-GENE-031112-11 GO:GO:0005739
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0060041 GO:GO:0004527
GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 EMBL:AY391423 EMBL:AY648844 EMBL:BC049413
EMBL:BC071488 IPI:IPI00484274 IPI:IPI00973671 RefSeq:NP_942115.1
UniGene:Dr.75750 HSSP:O93634 ProteinModelPortal:Q6TNU4 SMR:Q6TNU4
STRING:Q6TNU4 PRIDE:Q6TNU4 Ensembl:ENSDART00000024224 GeneID:386707
KEGG:dre:386707 CTD:2237 GeneTree:ENSGT00640000091478
HOGENOM:HOG000193853 HOVERGEN:HBG000844 InParanoid:Q6DRB5 KO:K04799
OMA:DYDSLLF OrthoDB:EOG415GDQ NextBio:20813986 Bgee:Q6TNU4
Uniprot:Q6TNU4
Length = 380
Score = 227 (85.0 bits), Expect = 5.1e-16, P = 5.1e-16
Identities = 72/283 (25%), Positives = 131/283 (46%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDTYSWLHKGALSCSRE--LCKGLP-- 51
MGI GL L+ P IKE E G +A+D +++ ++ ++ + +
Sbjct: 1 MGIHGLAKLIAD-HAPSAIKEHEIKSYFGRKIAIDASMCIYQFLIAVRQDGNVLQNEDGE 59
Query: 52 TSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGN 111
T+ H+ +R + G+KP+ +FDG +K + KR R E + + G
Sbjct: 60 TTSHLMGMFYRTIRMLESGIKPVYVFDGKPPQLKSGELEKRVERRAEAEKLLAQAQEAGE 119
Query: 112 SSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITED 171
+F ++ V ++ E ++L V YI AP EA+A L + +V A TED
Sbjct: 120 QENIDKFSKRLVKVTKQHNEECKKLLSLMGVPYIEAPCEAEASCAALVKAGKVYATATED 179
Query: 172 SDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSL 231
D + FG + ++ + + + ++ L T Q +++CIL GCDY ++
Sbjct: 180 MDGLTFGTT-VLLRHLTASEAKKLPIQEFHFSRILQDMELTHQQFIDLCILLGCDYCGTI 238
Query: 232 PGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPP--FYEESFG 272
G+G KRA LI + S +++++++ + P Y+E+ G
Sbjct: 239 KGIGPKRAIDLIKQHGSIEEILENIDPNKHPAPEDWLYKEARG 281
>TAIR|locus:2146824 [details] [associations]
symbol:AT5G26680 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=IEA;ISS] [GO:0008409 "5'-3' exonuclease
activity" evidence=IEA] [GO:0016788 "hydrolase activity, acting on
ester bonds" evidence=IEA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005829
GO:GO:0005739 EMBL:CP002688 GO:GO:0005654 GO:GO:0005730
GO:GO:0000287 GO:GO:0006284 GO:GO:0003677 GO:GO:0090305
GO:GO:0017108 GO:GO:0043137 GO:GO:0008409 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K04799 OMA:DYDSLLF IPI:IPI00536220
RefSeq:NP_850877.2 UniGene:At.47103 ProteinModelPortal:F4K191
SMR:F4K191 PRIDE:F4K191 EnsemblPlants:AT5G26680.1 GeneID:832721
KEGG:ath:AT5G26680 ArrayExpress:F4K191 Uniprot:F4K191
Length = 453
Score = 227 (85.0 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 90/336 (26%), Positives = 157/336 (46%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDTYSWLHKGALSCSR---ELCK---G 49
MGI+GL LL P +KE + G +AVD +++ + R E+ G
Sbjct: 1 MGIKGLTKLLAD-NAPSCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAG 59
Query: 50 LPTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESE 109
TS H+ +R L G+KP+ +FDG +K ++ KR R + A
Sbjct: 60 EVTS-HLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEA 118
Query: 110 GNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVIT 169
GN ++ ++ V ++ + ++L+ V + A EA+AQ L S +V V +
Sbjct: 119 GNKEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGVAS 178
Query: 170 EDSDLIPFGCSRII-FKMDKFGQGV---EFQCSMLQKNKDLSFGGFTKQMLLEMCILSGC 225
ED D + FG + + MD + + EF+ + + + L+ F +++CILSGC
Sbjct: 179 EDMDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQF-----IDLCILSGC 233
Query: 226 DYLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVP---PFYE--ESFGKA-VLTFQ 279
DY S+ G+G + A LI + S + ++++L +P P+ E + F + V+T +
Sbjct: 234 DYCDSIRGIGGQTALKLIRQHGSIETILENLNKERYQIPEEWPYNEARKLFKEPDVITDE 293
Query: 280 HQ---RVYDPKTEDIVHLSCISDNIGNDLDFLAKGI 312
Q + P E IV +++N G ++D + K I
Sbjct: 294 EQLDIKWTSPDEEGIVQF-LVNEN-GFNIDRVTKAI 327
>CGD|CAL0000208 [details] [associations]
symbol:orf19.547 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0017108 "5'-flap endonuclease activity" evidence=IEA]
[GO:0045145 "single-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0001302
"replicative cell aging" evidence=IEA] [GO:0006286 "base-excision
repair, base-free sugar-phosphate removal" evidence=IEA]
[GO:0000734 "gene conversion at mating-type locus, DNA repair
synthesis" evidence=IEA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IEA] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=IEA] [GO:0000723
"telomere maintenance" evidence=IEA] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 CGD:CAL0000208 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 GO:GO:0004519
EMBL:AACQ01000055 EMBL:AACQ01000054 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K04799 RefSeq:XP_717410.1
RefSeq:XP_717504.1 ProteinModelPortal:Q5A6K8 STRING:Q5A6K8
GeneID:3640904 GeneID:3640946 KEGG:cal:CaO19.547
KEGG:cal:CaO19.8182 Uniprot:Q5A6K8
Length = 372
Score = 221 (82.9 bits), Expect = 2.3e-15, P = 2.3e-15
Identities = 73/268 (27%), Positives = 125/268 (46%)
Query: 1 MGIQGLLPLLK----SIMIPIHIKELEGCCVAVDT----YSWLHKGALSCSRELCK--GL 50
MG++GL L+K S +K L G VA+D Y +L S ++L G
Sbjct: 1 MGVKGLNQLIKEHSPSAYKEFQLKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNEDGE 60
Query: 51 PTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEG 110
TS H+ +R + +KP+ +FDG +K + KR R+E + EG
Sbjct: 61 TTS-HLSGMFYRTIKMVENNIKPVYVFDGKPPVLKGGELEKRLLRREEAQKQKTALGDEG 119
Query: 111 NSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITE 170
+F ++ V ++ E ++L+ + + AP EA+AQ LA +V A +E
Sbjct: 120 TVEEVLKFEKRLVRVTREQNEEAKKLLQLMGIPCVDAPCEAEAQCAELARGGKVYAAASE 179
Query: 171 DSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFG-GFTKQMLLEMCILSGCDYLQ 229
D D + + ++ + F + + ++ KD G TK+ +++CIL GCDY +
Sbjct: 180 DMDTLCYEPPFLLRHLT-FSEARKMPIDQIEY-KDAIAGLDMTKEQFIDLCILLGCDYCE 237
Query: 230 SLPGMGLKRAHALISKFKSYDKVIKHLK 257
S+ G+G A LI + S D +++ +K
Sbjct: 238 SIKGIGQATAFKLIKEHGSLDNIVEWIK 265
>CGD|CAL0003758 [details] [associations]
symbol:RAD2 species:5476 "Candida albicans" [GO:0000112
"nucleotide-excision repair factor 3 complex" evidence=IEA;ISA]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=IEA;ISA] [GO:0006295 "nucleotide-excision
repair, DNA incision, 3'-to lesion" evidence=IEA;ISA] [GO:0034644
"cellular response to UV" evidence=IMP] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
CGD:CAL0003758 GO:GO:0003697 GO:GO:0034644 GO:GO:0000014
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0006295
GO:GO:0000112 KO:K10846 EMBL:AACQ01000139 EMBL:AACQ01000138
RefSeq:XP_709963.1 RefSeq:XP_713000.1 ProteinModelPortal:Q59TL2
STRING:Q59TL2 GeneID:3645374 GeneID:3645402 KEGG:cal:CaO19.1324
KEGG:cal:CaO19.8904 Uniprot:Q59TL2
Length = 990
Score = 165 (63.1 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 57/210 (27%), Positives = 104/210 (49%)
Query: 117 EFYQKAV----DISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDS 172
E +QKA +++ ++ +++ ++LK+ + YI AP EA+AQ L V+ ++T+DS
Sbjct: 713 EKFQKAKRDSDEVTETMINDVQELLKRFGIPYITAPMEAEAQCAELYKIGLVDGIVTDDS 772
Query: 173 DLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLP 232
D FG +I M Q VEF NK T+ L+E+ +L G DY + +
Sbjct: 773 DCFLFGGDKIYKNMFDQKQYVEFYLQDDLFNKM----ALTQHKLIELALLLGSDYTEGIK 828
Query: 233 GMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYE-ESFGKAVLT-FQHQRVYDPKT-- 288
G+G +A ++++F + +K + T SV E K++L + ++Y P +
Sbjct: 829 GIGPVQAMEILAEFGNLEKFKEWFDKHTKSVADKTELTKLQKSLLDRIKKGKLYLPDSFP 888
Query: 289 EDIVHLSCISDNIGNDLDFLAKGIAIGDLD 318
+ +V + +S + +D G+ DLD
Sbjct: 889 DKVVEQAYMSPEVDSDKTEFQWGVP--DLD 916
Score = 117 (46.2 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 27/99 (27%), Positives = 52/99 (52%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MG+ L ++ P+ ++ L +A+D W+++ + + LP+S HI
Sbjct: 1 MGVHSLWKIVGPTARPVRLEALSKKKLAIDASIWIYQFLKAMRDKDGNSLPSS-HIIGFF 59
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKEN 99
R+ L ++G+ PI +FDGG+ +K + N R + R++N
Sbjct: 60 RRICKLLYFGILPIFVFDGGVPALKKQTINNRKQRREKN 98
>UNIPROTKB|Q59TL2 [details] [associations]
symbol:RAD2 "Putative uncharacterized protein RAD13"
species:237561 "Candida albicans SC5314" [GO:0000014
"single-stranded DNA specific endodeoxyribonuclease activity"
evidence=ISA] [GO:0000112 "nucleotide-excision repair factor 3
complex" evidence=ISA] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=ISA] [GO:0034644 "cellular
response to UV" evidence=IMP] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 CGD:CAL0003758 GO:GO:0003697
GO:GO:0034644 GO:GO:0000014 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0006295 GO:GO:0000112 KO:K10846
EMBL:AACQ01000139 EMBL:AACQ01000138 RefSeq:XP_709963.1
RefSeq:XP_713000.1 ProteinModelPortal:Q59TL2 STRING:Q59TL2
GeneID:3645374 GeneID:3645402 KEGG:cal:CaO19.1324
KEGG:cal:CaO19.8904 Uniprot:Q59TL2
Length = 990
Score = 165 (63.1 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 57/210 (27%), Positives = 104/210 (49%)
Query: 117 EFYQKAV----DISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDS 172
E +QKA +++ ++ +++ ++LK+ + YI AP EA+AQ L V+ ++T+DS
Sbjct: 713 EKFQKAKRDSDEVTETMINDVQELLKRFGIPYITAPMEAEAQCAELYKIGLVDGIVTDDS 772
Query: 173 DLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLP 232
D FG +I M Q VEF NK T+ L+E+ +L G DY + +
Sbjct: 773 DCFLFGGDKIYKNMFDQKQYVEFYLQDDLFNKM----ALTQHKLIELALLLGSDYTEGIK 828
Query: 233 GMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYE-ESFGKAVLT-FQHQRVYDPKT-- 288
G+G +A ++++F + +K + T SV E K++L + ++Y P +
Sbjct: 829 GIGPVQAMEILAEFGNLEKFKEWFDKHTKSVADKTELTKLQKSLLDRIKKGKLYLPDSFP 888
Query: 289 EDIVHLSCISDNIGNDLDFLAKGIAIGDLD 318
+ +V + +S + +D G+ DLD
Sbjct: 889 DKVVEQAYMSPEVDSDKTEFQWGVP--DLD 916
Score = 117 (46.2 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 27/99 (27%), Positives = 52/99 (52%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MG+ L ++ P+ ++ L +A+D W+++ + + LP+S HI
Sbjct: 1 MGVHSLWKIVGPTARPVRLEALSKKKLAIDASIWIYQFLKAMRDKDGNSLPSS-HIIGFF 59
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKEN 99
R+ L ++G+ PI +FDGG+ +K + N R + R++N
Sbjct: 60 RRICKLLYFGILPIFVFDGGVPALKKQTINNRKQRREKN 98
>ASPGD|ASPL0000038590 [details] [associations]
symbol:AN2764 species:162425 "Emericella nidulans"
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0045145 "single-stranded
DNA specific 5'-3' exodeoxyribonuclease activity" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 EMBL:BN001306 GO:GO:0004527 GO:GO:0090305
GO:GO:0004519 EMBL:AACD01000049 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 HOGENOM:HOG000193853 KO:K04799 OMA:DYDSLLF
RefSeq:XP_660368.1 ProteinModelPortal:Q5B9L6 STRING:Q5B9L6
EnsemblFungi:CADANIAT00010345 GeneID:2874366 KEGG:ani:AN2764.2
OrthoDB:EOG41VPBP Uniprot:Q5B9L6
Length = 395
Score = 217 (81.4 bits), Expect = 8.4e-15, P = 8.4e-15
Identities = 67/244 (27%), Positives = 116/244 (47%)
Query: 19 IKELEGCCVAVDT----YSWLHKGALSCSRELCKGL-PTSRHIDYCMHRVNLLRHYGVKP 73
IK G VA+D YS+L S ++L T+ H+ +R + G+KP
Sbjct: 23 IKNHFGRKVAIDASMSIYSFLI-AVRSEGQQLMSDTGETTSHLMGMFYRTLRMVDNGIKP 81
Query: 74 ILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQKAVDISPSIAHEL 133
+ +FDG +K + KR+ + E E + G + +F ++ V ++ E
Sbjct: 82 LYVFDGAPPKLKSGELAKRSARKHEATEAHEEAKETGTAEDVEKFSRRTVRVTREHNAEC 141
Query: 134 IQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSRIIFKMDKFGQGV 193
++LK + YI AP EA+AQ LA + +V A +ED D + F I+ + F +
Sbjct: 142 KKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAP-ILLRHLTFSEQR 200
Query: 194 EFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAHALISKFKSYDKVI 253
+ + N+ L G + +++CIL GCDYL+ +P +G A LI + +KV+
Sbjct: 201 KEPIQEIHLNRALEGLGMDRNQFIDLCILLGCDYLEPIPKVGPNTALKLIRDHGTLEKVV 260
Query: 254 KHLK 257
+ ++
Sbjct: 261 ESIE 264
>POMBASE|SPAC3G6.06c [details] [associations]
symbol:rad2 "FEN-1 endonuclease Rad2" species:4896
"Schizosaccharomyces pombe" [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IMP]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IC;IDA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=ISO] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IGI] [GO:0043596 "nuclear
replication fork" evidence=IC] [GO:0045145 "single-stranded DNA
specific 5'-3' exodeoxyribonuclease activity" evidence=IDA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 PomBase:SPAC3G6.06c GO:GO:0005739
GO:GO:0005654 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0043596 GO:GO:0000723
GO:GO:0000731 GO:GO:0017108 GO:GO:0043137 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0045145
HOGENOM:HOG000193853 KO:K04799 OMA:DYDSLLF OrthoDB:EOG41VPBP
EMBL:X77041 PIR:A56054 RefSeq:NP_594972.1 ProteinModelPortal:P39750
STRING:P39750 EnsemblFungi:SPAC3G6.06c.1 GeneID:2543164
KEGG:spo:SPAC3G6.06c NextBio:20804190 Uniprot:P39750
Length = 380
Score = 207 (77.9 bits), Expect = 9.9e-14, P = 9.9e-14
Identities = 75/276 (27%), Positives = 130/276 (47%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDT----YSWLHKGALSCSRELC--KG 49
MGI+GL +L S P +K + G VA+D Y +L + ++L +G
Sbjct: 1 MGIKGLAQVL-SEHAPASVKHNDIKNYFGRKVAIDASMSLYQFLIQVRSQDGQQLMNEQG 59
Query: 50 LPTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKR-ARSRKENLARAIECES 108
TS H+ +R + G+KP +FDG +K + KR AR +K + E +
Sbjct: 60 ETTS-HLMGMFYRTLRIVDNGIKPCFVFDGKPPTLKSGELAKRVARHQKAREDQE-ETKE 117
Query: 109 EGNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVI 168
G + F ++ V ++ E ++L+ + ++ AP EA+AQ LA S +V A
Sbjct: 118 VGTAEMVDRFAKRTVKVTRQHNDEAKRLLELMGIPFVNAPCEAEAQCAALARSGKVYAAA 177
Query: 169 TEDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYL 228
+ED D + F ++ + F + + S K L+ + + +++CIL GCDY
Sbjct: 178 SEDMDTLCFQAP-VLLRHLTFSEQRKEPISEYNIEKALNGLDMSVEQFVDLCILLGCDYC 236
Query: 229 QSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVP 264
+ + G+G RA LI ++ + D+ +K S +P
Sbjct: 237 EPIRGVGPARAVELIRQYGTLDRFVKEADRSKYPIP 272
>ASPGD|ASPL0000027656 [details] [associations]
symbol:AN5216 species:162425 "Emericella nidulans"
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0008409
"5'-3' exonuclease activity" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:1901255
"nucleotide-excision repair involved in interstrand cross-link
repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 Pfam:PF02809 GO:GO:0005634
EMBL:BN001305 GO:GO:0003697 GO:GO:0090305 GO:GO:0004519
InterPro:IPR003903 SMART:SM00726 PROSITE:PS50330 EMBL:AACD01000089
GO:GO:0006289 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10846 HOGENOM:HOG000214817 OMA:VYKNMFN OrthoDB:EOG4XPTQ6
RefSeq:XP_662820.1 ProteinModelPortal:Q5B2L4 STRING:Q5B2L4
EnsemblFungi:CADANIAT00003214 GeneID:2871507 KEGG:ani:AN5216.2
Uniprot:Q5B2L4
Length = 1141
Score = 146 (56.5 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 38/130 (29%), Positives = 68/130 (52%)
Query: 122 AVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSR 181
A +++ + E Q+L+ + YI AP EA+AQ L V+ +IT+DSD+ FG +R
Sbjct: 801 ADEVTQIMITECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDIFLFGGTR 860
Query: 182 IIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAHA 241
+ M F Q +C L + + + ++ L+ L G DY + +PG+G A
Sbjct: 861 VYKNM--FNQSKYVEC-YLTADLEKEYA-LHRRKLISFAHLLGSDYTEGIPGIGPVTALE 916
Query: 242 LISKFKSYDK 251
++++F S ++
Sbjct: 917 ILTEFSSLEE 926
Score = 121 (47.7 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 30/102 (29%), Positives = 52/102 (50%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MG+QGL +++ P+ ++ L +AVD W+++ L R+ + HI
Sbjct: 1 MGVQGLWTIVQPCARPVKLETLNRKRLAVDASIWIYQ-FLKAVRDKEGNALRNSHIVGFF 59
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMK---IEQENKRARSRKEN 99
R+ L ++G+KP+ +FDGG +K I KR R+E+
Sbjct: 60 RRICKLLYFGIKPVFVFDGGAPVLKRQTIANRKKRREGRRED 101
>SGD|S000001596 [details] [associations]
symbol:RAD27 "5' to 3' exonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0000734 "gene
conversion at mating-type locus, DNA repair synthesis"
evidence=IMP] [GO:0006286 "base-excision repair, base-free
sugar-phosphate removal" evidence=IGI;IMP] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0008409 "5'-3'
exonuclease activity" evidence=IEA;IDA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA;IDA] [GO:0043137 "DNA replication, removal of RNA
primer" evidence=IEA;IDA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IDA] [GO:0001302
"replicative cell aging" evidence=IMP] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 SGD:S000001596 GO:GO:0005739 GO:GO:0005634
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
GO:GO:0001302 EMBL:BK006944 EMBL:S93804 GO:GO:0006303 GO:GO:0017108
GO:GO:0043137 GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0000734 GeneTree:ENSGT00640000091478
KO:K04799 OMA:DYDSLLF OrthoDB:EOG41VPBP EMBL:Z28113 PIR:S22267
RefSeq:NP_012809.1 ProteinModelPortal:P26793 SMR:P26793
DIP:DIP-2325N IntAct:P26793 MINT:MINT-536469 STRING:P26793
PaxDb:P26793 PeptideAtlas:P26793 EnsemblFungi:YKL113C GeneID:853747
KEGG:sce:YKL113C CYGD:YKL113c NextBio:974807 Genevestigator:P26793
GermOnline:YKL113C GO:GO:0006286 Uniprot:P26793
Length = 382
Score = 199 (75.1 bits), Expect = 8.1e-13, P = 8.1e-13
Identities = 72/270 (26%), Positives = 123/270 (45%)
Query: 1 MGIQGLLPLLK----SIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLP----- 51
MGI+GL ++ S + IK G VA+D L++ ++ ++ L
Sbjct: 1 MGIKGLNAIISEHVPSAIRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGE 60
Query: 52 TSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGN 111
T+ H+ +R + G+KP +FDG +K + KR+ R E + E +E
Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKRSSRRVETEKKLAEATTE-L 119
Query: 112 SSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITED 171
E ++ V +S E ++L + YI+AP EA+AQ LA +V A +ED
Sbjct: 120 EKMKQE--RRLVKVSKEHNEEAQKLLGLMGIPYIIAPTEAEAQCAELAKKGKVYAAASED 177
Query: 172 SDLI----PFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDY 227
D + PF + F K E ++ + DL T + +++CI+ GCDY
Sbjct: 178 MDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDL-----TIEQFVDLCIMLGCDY 232
Query: 228 LQSLPGMGLKRAHALISKFKSYDKVIKHLK 257
+S+ G+G A LI S +K+++ ++
Sbjct: 233 CESIRGVGPVTALKLIKTHGSIEKIVEFIE 262
>UNIPROTKB|E1BZY2 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003697 "single-stranded DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 SUPFAM:SSF47807 PANTHER:PTHR11081:SF1
GeneTree:ENSGT00640000091542 EMBL:AADN02029216 IPI:IPI00923817
Ensembl:ENSGALT00000036537 ArrayExpress:E1BZY2 Uniprot:E1BZY2
Length = 1007
Score = 140 (54.3 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 38/152 (25%), Positives = 68/152 (44%)
Query: 98 ENLARAIECESEGNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTF 157
E L + E E S + + A ++ + E ++L+ + YI AP EA+AQ
Sbjct: 754 EELENDLSAEQEMLQSQKQQQERVATSVTGQMFLESQELLRLFGIPYIEAPMEAEAQCAI 813
Query: 158 LAVSKQVEAVITEDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLL 217
L ++ Q IT+DSD+ FG + + VE+ + L G + L+
Sbjct: 814 LDLTDQTSGTITDDSDVWLFGARHVYKNFFSRNKYVEYY-QYIDFQNQL---GLDRSKLI 869
Query: 218 EMCILSGCDYLQSLPGMGLKRAHALISKFKSY 249
+ L G DY + +P +G A ++++F +
Sbjct: 870 NLAYLLGSDYTEGIPNVGFVTAMEILNEFPGH 901
Score = 114 (45.2 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 31/98 (31%), Positives = 52/98 (53%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MG+QGL LL+ P++ + LEG +AVD WL++ A+ R+ + H+
Sbjct: 1 MGVQGLWKLLECTGRPVNPETLEGKILAVDISIWLNQ-AVKGVRDRHGNTIQNAHLLTLF 59
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKE 98
+R+ L + ++P+ +FDG P+ Q + R RKE
Sbjct: 60 NRLCKLLFFRIRPVFVFDGEA-PLLKRQTLAKRRHRKE 96
>UNIPROTKB|F1P266 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0004520
"endodeoxyribonuclease activity" evidence=IEA] [GO:0005675 "holo
TFIIH complex" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=IEA] [GO:0008340 "determination of adult lifespan"
evidence=IEA] [GO:0009650 "UV protection" evidence=IEA] [GO:0010225
"response to UV-C" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0043066 GO:GO:0003690 GO:GO:0003697
GO:GO:0004520 GO:GO:0010225 GO:GO:0000405 GO:GO:0009650
GO:GO:0005675 GO:GO:0006283 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0006295 PANTHER:PTHR11081:SF1 GeneTree:ENSGT00640000091542
EMBL:AADN02029216 IPI:IPI00655481 Ensembl:ENSGALT00000027237
ArrayExpress:F1P266 Uniprot:F1P266
Length = 1111
Score = 140 (54.3 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 38/152 (25%), Positives = 68/152 (44%)
Query: 98 ENLARAIECESEGNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTF 157
E L + E E S + + A ++ + E ++L+ + YI AP EA+AQ
Sbjct: 685 EELENDLSAEQEMLQSQKQQQERVATSVTGQMFLESQELLRLFGIPYIEAPMEAEAQCAI 744
Query: 158 LAVSKQVEAVITEDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLL 217
L ++ Q IT+DSD+ FG + + VE+ + L G + L+
Sbjct: 745 LDLTDQTSGTITDDSDVWLFGARHVYKNFFSRNKYVEYY-QYIDFQNQL---GLDRSKLI 800
Query: 218 EMCILSGCDYLQSLPGMGLKRAHALISKFKSY 249
+ L G DY + +P +G A ++++F +
Sbjct: 801 NLAYLLGSDYTEGIPNVGFVTAMEILNEFPGH 832
Score = 114 (45.2 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 31/98 (31%), Positives = 52/98 (53%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MG+QGL LL+ P++ + LEG +AVD WL++ A+ R+ + H+
Sbjct: 1 MGVQGLWKLLECTGRPVNPETLEGKILAVDISIWLNQ-AVKGVRDRHGNTIQNAHLLTLF 59
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKE 98
+R+ L + ++P+ +FDG P+ Q + R RKE
Sbjct: 60 NRLCKLLFFRIRPVFVFDGEA-PLLKRQTLAKRRHRKE 96
>UNIPROTKB|E5RGY3 [details] [associations]
symbol:EXO1 "Exonuclease 1" species:9606 "Homo sapiens"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
Pfam:PF00752 SMART:SM00485 GO:GO:0006281 GO:GO:0090305
GO:GO:0004518 PANTHER:PTHR11081 EMBL:AL365366 HGNC:HGNC:3511
IPI:IPI00978371 ProteinModelPortal:E5RGY3 SMR:E5RGY3
Ensembl:ENST00000523590 ArrayExpress:E5RGY3 Bgee:E5RGY3
Uniprot:E5RGY3
Length = 95
Score = 172 (65.6 bits), Expect = 5.8e-12, P = 5.8e-12
Identities = 31/54 (57%), Positives = 40/54 (74%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSR 54
MGIQGLL +K PIH+++ +G VAVDTY WLHKGA++C+ +L KG PT R
Sbjct: 1 MGIQGLLQFIKEASEPIHVRKYKGQVVAVDTYCWLHKGAIACAEKLAKGEPTDR 54
>SGD|S000003490 [details] [associations]
symbol:RAD2 "Single-stranded DNA endonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006295 "nucleotide-excision repair, DNA incision, 3'-to
lesion" evidence=IDA;IMP] [GO:0000112 "nucleotide-excision repair
factor 3 complex" evidence=IDA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0016788 "hydrolase activity, acting on
ester bonds" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IGI] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 SGD:S000003490 EMBL:BK006941 GO:GO:0046872
GO:GO:0006366 GO:GO:0003697 EMBL:Y07777 GO:GO:0000014
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0006295
GO:GO:0000112 KO:K10846 TIGRFAMs:TIGR00600 HOGENOM:HOG000214817
OMA:VYKNMFN OrthoDB:EOG4XPTQ6 EMBL:M10275 EMBL:Z73043 EMBL:AY692857
PIR:A29839 RefSeq:NP_011774.1 PDB:2LOX PDBsum:2LOX
ProteinModelPortal:P07276 SMR:P07276 DIP:DIP-5869N IntAct:P07276
MINT:MINT-683829 STRING:P07276 PaxDb:P07276 PeptideAtlas:P07276
PRIDE:P07276 EnsemblFungi:YGR258C GeneID:853174 KEGG:sce:YGR258C
CYGD:YGR258c GeneTree:ENSGT00640000091542 NextBio:973302
Genevestigator:P07276 GermOnline:YGR258C Uniprot:P07276
Length = 1031
Score = 138 (53.6 bits), Expect = 9.7e-12, Sum P(2) = 9.7e-12
Identities = 37/123 (30%), Positives = 62/123 (50%)
Query: 124 DISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSRII 183
+++ + E+ ++L + + YI AP EA+AQ L V+ +IT+DSD+ FG ++I
Sbjct: 766 EVTMDMIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIY 825
Query: 184 FKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAHALI 243
M VEF L G ++ ++E+ L G DY L GMG + +I
Sbjct: 826 KNMFHEKNYVEFY----DAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVI 881
Query: 244 SKF 246
++F
Sbjct: 882 AEF 884
Score = 111 (44.1 bits), Expect = 9.7e-12, Sum P(2) = 9.7e-12
Identities = 26/102 (25%), Positives = 51/102 (50%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MG+ + P+ ++ LE +AVD W+++ L R+ + HI
Sbjct: 1 MGVHSFWDIAGPTARPVRLESLEDKRMAVDASIWIYQ-FLKAVRDQEGNAVKNSHITGFF 59
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMK---IEQENKRARSRKEN 99
R+ L ++G++P+ +FDGG+ +K I Q +R + ++E+
Sbjct: 60 RRICKLLYFGIRPVFVFDGGVPVLKRETIRQRKERRQGKRES 101
>ZFIN|ZDB-GENE-050327-28 [details] [associations]
symbol:ercc5 "excision repair cross-complementing
rodent repair deficiency, complementation group 5 (xeroderma
pigmentosum, complementation group G (Cockayne syndrome))"
species:7955 "Danio rerio" [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
ZFIN:ZDB-GENE-050327-28 GO:GO:0005634 GO:GO:0003697 GO:GO:0090305
GO:GO:0004519 GO:GO:0006289 PANTHER:PTHR11081 SUPFAM:SSF47807
PANTHER:PTHR11081:SF1 GeneTree:ENSGT00640000091542 EMBL:CU571081
EMBL:CU855897 IPI:IPI00997036 Ensembl:ENSDART00000144406
Bgee:F1QJS3 Uniprot:F1QJS3
Length = 1010
Score = 127 (49.8 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 39/149 (26%), Positives = 71/149 (47%)
Query: 100 LARAIECESEGNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLA 159
L R ++ E + + + + ++ + E ++L+ V +IVAP EA+AQ L
Sbjct: 629 LDRELQDEQQTLREQHQQQQRSSSTVTGQMCQESQELLRLFGVPFIVAPMEAEAQCAALD 688
Query: 160 VSKQVEAVITEDSDLIPFGCSRIIFKMDKFGQG--VEFQCSMLQKNKDLSFGGFTKQMLL 217
Q IT+DSD+ FG R +++ + F Q VE ++ L G + L+
Sbjct: 689 RLDQTHGTITDDSDIWLFG-GRHVYR-NFFNQNKYVEHY-QIVDMQNQL---GLDRSKLI 742
Query: 218 EMCILSGCDYLQSLPGMGLKRAHALISKF 246
+ L G DY + +PG+G ++++F
Sbjct: 743 NLAYLLGSDYTEGIPGVGYVTGMEILNEF 771
Score = 119 (46.9 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 34/109 (31%), Positives = 55/109 (50%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MG+ GL LL+S PI+ + LEG +AVD WL++ A+ R+ + H+
Sbjct: 1 MGVHGLWKLLESTGKPINPETLEGKILAVDISIWLNQ-AVKGVRDRDGNAVQNAHLLTLF 59
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESE 109
HR+ L + ++P+ ++DG P+ +Q R R+E R SE
Sbjct: 60 HRLCKLLFFRIRPVFVYDGDA-PLLKKQTLAVRRQRREETNRESRQTSE 107
>POMBASE|SPBC3E7.08c [details] [associations]
symbol:rad13 "DNA repair nuclease Rad13" species:4896
"Schizosaccharomyces pombe" [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006289
"nucleotide-excision repair" evidence=IGI] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=TAS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:1901255 "nucleotide-excision repair involved in interstrand
cross-link repair" evidence=IMP] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 PomBase:SPBC3E7.08c GO:GO:0005634 GO:GO:0046872
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003697 GO:GO:0004519
InterPro:IPR003903 PROSITE:PS50330 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0006295 KO:K10846 PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 GO:GO:1901255 EMBL:X66795 PIR:S30301 PIR:T40382
RefSeq:NP_596095.1 ProteinModelPortal:P28706 STRING:P28706
EnsemblFungi:SPBC3E7.08c.1 GeneID:2541051 KEGG:spo:SPBC3E7.08c
HOGENOM:HOG000214817 OMA:VYKNMFN OrthoDB:EOG4XPTQ6 NextBio:20802165
Uniprot:P28706
Length = 1112
Score = 125 (49.1 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 39/126 (30%), Positives = 65/126 (51%)
Query: 122 AVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSR 181
A +++ + E ++L+ + YIVAP EA+AQ + L K V+ ++T+DSD+ FG +R
Sbjct: 749 ADEVTQVMIKECQELLRLFGLPYIVAPQEAEAQCSKLLELKLVDGIVTDDSDVFLFGGTR 808
Query: 182 IIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQM-LLEMCILSGCDYLQSLPGMGLKRAH 240
+ M F Q +F L + F QM L+++ L G DY L +G A
Sbjct: 809 VYRNM--FNQN-KFVELYLMDDMKREFN--VNQMDLIKLAHLLGSDYTMGLSRVGPVLAL 863
Query: 241 ALISKF 246
++ +F
Sbjct: 864 EILHEF 869
Score = 121 (47.7 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 29/102 (28%), Positives = 52/102 (50%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MG+ GL +L+ + P+ ++ L +A+D W+++ L R+ S H+
Sbjct: 1 MGVSGLWDILEPVKRPVKLETLVNKRLAIDASIWIYQ-FLKAVRDKEGNQLKSSHVVGFF 59
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMK---IEQENKRARSRKEN 99
R+ L +G+KP+ +FDGG +K I++ R R+EN
Sbjct: 60 RRICKLLFFGIKPVFVFDGGAPSLKRQTIQKRQARRLDREEN 101
Score = 52 (23.4 bits), Expect = 0.00085, Sum P(2) = 0.00084
Identities = 43/169 (25%), Positives = 71/169 (42%)
Query: 506 QENKQEKLVVENDAAIDMSENTGLQSAHFDYSYLKGTAIKRKTSLI-DSVHTDKMGSKLM 564
+EN ++ + N A++ +E S D S +K +RK L D +M
Sbjct: 122 EENNKKATALAN-ASVQ-NERQMPSSMTLDNSEIKPVLNQRKNYLKPDPYQLPEMDVSFD 179
Query: 565 RTNASLHNNGYSDPNLDKTIATETDEAKFGANISHLGSYSEIAEKSMERFVSV--ISKYR 622
+ +S S L + +++ T K +I+ L +S I S E F S+ KY
Sbjct: 180 KLGSSYDPRIMSQDELTQYVSSFT---KI-EDIN-LFDFSNIDFDS-ELFQSLPDTDKYS 233
Query: 623 CTSGSRA-SGLRAPLKDVRNTCTVRSPVAVDFSQFEYVPKSRKSDLASR 670
S +R S LR L + + P +DFS+F+ ++DL R
Sbjct: 234 ILSAARLRSRLRMGLSSEQ--LSEMFPNRMDFSRFQIERLKERNDLTQR 280
>UNIPROTKB|Q3B7N6 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=ISS]
[GO:0043066 "negative regulation of apoptotic process"
evidence=ISS] [GO:0042803 "protein homodimerization activity"
evidence=ISS] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISS] [GO:0010225 "response to UV-C"
evidence=ISS] [GO:0009411 "response to UV" evidence=ISS]
[GO:0006295 "nucleotide-excision repair, DNA incision, 3'-to
lesion" evidence=ISS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISS] [GO:0005675 "holo TFIIH
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0004520 "endodeoxyribonuclease activity" evidence=ISS]
[GO:0003697 "single-stranded DNA binding" evidence=ISS] [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0000405 "bubble DNA
binding" evidence=ISS] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0043066 GO:GO:0042803 GO:GO:0003690 GO:GO:0003697
GO:GO:0004520 GO:GO:0047485 GO:GO:0010225 GO:GO:0000405
GO:GO:0006283 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0006295 CTD:2073 HOVERGEN:HBG051501 KO:K10846
OrthoDB:EOG4CNQQZ PANTHER:PTHR11081:SF1 TIGRFAMs:TIGR00600
HOGENOM:HOG000131367 GeneTree:ENSGT00640000091542 EMBL:DAAA02034800
EMBL:BC107528 IPI:IPI00691871 RefSeq:NP_001030353.1
UniGene:Bt.39059 STRING:Q3B7N6 Ensembl:ENSBTAT00000046365
GeneID:509602 KEGG:bta:509602 InParanoid:Q3B7N6 NextBio:20869041
Uniprot:Q3B7N6
Length = 1201
Score = 130 (50.8 bits), Expect = 7.8e-11, Sum P(2) = 7.8e-11
Identities = 36/131 (27%), Positives = 64/131 (48%)
Query: 122 AVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSR 181
A ++ + E ++L+ + YI AP EA+AQ L ++ Q IT+DSD+ FG
Sbjct: 777 AATVTGQMFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARH 836
Query: 182 I---IFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKR 238
+ F +KF VE+ + + L G + L+ + L G DY + +P +G
Sbjct: 837 VYKNFFNKNKF---VEYY-QYVDFHNQL---GLDRNKLINLAYLLGSDYTEGIPTVGCVT 889
Query: 239 AHALISKFKSY 249
A ++++F +
Sbjct: 890 AMEILNEFPGH 900
Score = 112 (44.5 bits), Expect = 7.8e-11, Sum P(2) = 7.8e-11
Identities = 33/101 (32%), Positives = 54/101 (53%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MG+QGL LL+ I + LEG +AVD WL++ AL R+ + H+
Sbjct: 1 MGVQGLWKLLECSGRQISPETLEGKILAVDISIWLNQ-ALKGVRDRHGNSIENAHLLTLF 59
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLA 101
HR+ L + ++PI +FDG P+ ++++ R K++LA
Sbjct: 60 HRLCKLLFFRIRPIFVFDGDA-PL-LKKQTLAKRRHKKDLA 98
>UNIPROTKB|P28715 [details] [associations]
symbol:ERCC5 "DNA repair protein complementing XP-G cells"
species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0008340 "determination of adult lifespan"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0004520 "endodeoxyribonuclease activity"
evidence=IDA] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=IMP;IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005675 "holo TFIIH complex"
evidence=IDA] [GO:0009411 "response to UV" evidence=IDA;IMP]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IMP] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP;TAS] [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=IDA]
[GO:0000405 "bubble DNA binding" evidence=IDA] [GO:0010225
"response to UV-C" evidence=IMP] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009650 "UV
protection" evidence=IGI] [GO:0000718 "nucleotide-excision repair,
DNA damage removal" evidence=TAS] [GO:0004519 "endonuclease
activity" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] Reactome:REACT_216
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0008340 GO:GO:0043066
GO:GO:0005654 GO:GO:0046872 GO:GO:0003690 GO:GO:0003697
GO:GO:0035264 GO:GO:0004520 GO:GO:0010225 EMBL:AL157769
GO:GO:0000405 GO:GO:0009650 GO:GO:0000718 GO:GO:0006283
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0006295
Orphanet:1466 Orphanet:220295 EMBL:X69978 EMBL:D16305 EMBL:L20046
EMBL:AF255442 EMBL:AF255431 EMBL:AF255433 EMBL:AF255434
EMBL:AF255435 EMBL:AF255436 EMBL:AF255437 EMBL:AF255438
EMBL:AF255439 EMBL:AF255440 EMBL:AF255441 EMBL:AF462447
EMBL:AF550128 EMBL:BC031522 EMBL:X71341 EMBL:X71342 IPI:IPI00477535
IPI:IPI00848102 PIR:I58009 PIR:S35993 RefSeq:NP_000114.2
UniGene:Hs.258429 ProteinModelPortal:P28715 SMR:P28715 DIP:DIP-750N
IntAct:P28715 MINT:MINT-192239 STRING:P28715 PhosphoSite:P28715
DMDM:205371791 PaxDb:P28715 PRIDE:P28715 DNASU:2073
Ensembl:ENST00000355739 Ensembl:ENST00000375954 GeneID:2073
KEGG:hsa:2073 UCSC:uc001vpw.3 CTD:2073 GeneCards:GC13P103459
HGNC:HGNC:3437 MIM:133530 MIM:278780 neXtProt:NX_P28715
Orphanet:276267 PharmGKB:PA27851 HOVERGEN:HBG051501
InParanoid:P28715 KO:K10846 OrthoDB:EOG4CNQQZ BindingDB:P28715
ChEMBL:CHEMBL4736 GenomeRNAi:2073 NextBio:8433 ArrayExpress:P28715
Bgee:P28715 CleanEx:HS_ERCC5 Genevestigator:P28715
GermOnline:ENSG00000134899 PANTHER:PTHR11081:SF1 TIGRFAMs:TIGR00600
Uniprot:P28715
Length = 1186
Score = 130 (50.8 bits), Expect = 9.7e-11, Sum P(2) = 9.7e-11
Identities = 36/131 (27%), Positives = 64/131 (48%)
Query: 122 AVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSR 181
A ++ + E ++L+ + YI AP EA+AQ L ++ Q IT+DSD+ FG
Sbjct: 761 AATVTGQMFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARH 820
Query: 182 I---IFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKR 238
+ F +KF VE+ + + L G + L+ + L G DY + +P +G
Sbjct: 821 VYRNFFNKNKF---VEYY-QYVDFHNQL---GLDRNKLINLAYLLGSDYTEGIPTVGCVT 873
Query: 239 AHALISKFKSY 249
A ++++F +
Sbjct: 874 AMEILNEFPGH 884
Score = 111 (44.1 bits), Expect = 9.7e-11, Sum P(2) = 9.7e-11
Identities = 32/98 (32%), Positives = 51/98 (52%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MG+QGL LL+ + + LEG +AVD WL++ AL R+ + H+
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQ-ALKGVRDRHGNSIENPHLLTLF 59
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKE 98
HR+ L + ++PI +FDG P+ +Q + R RK+
Sbjct: 60 HRLCKLLFFRIRPIFVFDGDA-PLLKKQTLVKRRQRKD 96
>TAIR|locus:2091343 [details] [associations]
symbol:UVH3 "ULTRAVIOLET HYPERSENSITIVE 3" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0016788 "hydrolase activity, acting on ester
bonds" evidence=IEA] [GO:0010224 "response to UV-B" evidence=IGI]
[GO:0009408 "response to heat" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006486 "protein glycosylation"
evidence=RCA] [GO:0010213 "non-photoreactive DNA repair"
evidence=IMP] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0009408
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0010224
GO:GO:0006289 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0010213 KO:K10846 PANTHER:PTHR11081:SF1 OMA:VYKNMFN
EMBL:AB028616 EMBL:AF312711 IPI:IPI00535100 RefSeq:NP_566830.1
UniGene:At.5484 ProteinModelPortal:Q9ATY5 SMR:Q9ATY5 IntAct:Q9ATY5
STRING:Q9ATY5 PaxDb:Q9ATY5 PRIDE:Q9ATY5 EnsemblPlants:AT3G28030.1
GeneID:822427 KEGG:ath:AT3G28030 GeneFarm:4444 TAIR:At3g28030
HOGENOM:HOG000083663 InParanoid:Q9ATY5 PhylomeDB:Q9ATY5
ProtClustDB:CLSN2688857 Genevestigator:Q9ATY5 GermOnline:AT3G28030
Uniprot:Q9ATY5
Length = 1479
Score = 157 (60.3 bits), Expect = 2.4e-10, Sum P(3) = 2.4e-10
Identities = 42/151 (27%), Positives = 79/151 (52%)
Query: 105 ECESEGNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQV 164
E S G+ E + A +S + E ++L+ + YI+AP EA+AQ F+ S V
Sbjct: 903 EFVSLGDEQRKLE--RNAESVSSEMFAECQELLQIFGIPYIIAPMEAEAQCAFMEQSNLV 960
Query: 165 EAVITEDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQK-NKDLSFGGFTKQMLLEMCILS 223
+ ++T+DSD+ FG +R ++K + F + ++ K+L G ++ ++ M +L
Sbjct: 961 DGIVTDDSDVFLFG-ARSVYK-NIFDDRKYVETYFMKDIEKEL---GLSRDKIIRMAMLL 1015
Query: 224 GCDYLQSLPGMGLKRAHALISKFKSYDKVIK 254
G DY + + G+G+ A +++ F D + K
Sbjct: 1016 GSDYTEGISGIGIVNAIEVVTAFPEEDGLQK 1046
Score = 87 (35.7 bits), Expect = 2.4e-10, Sum P(3) = 2.4e-10
Identities = 29/109 (26%), Positives = 47/109 (43%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MG+QGL LL + + ++ L +A+D W+ + + R+ + + H+
Sbjct: 1 MGVQGLWELLAPVGRRVSVETLANKRLAIDASIWMVQ-FIKAMRDEKGDMVQNAHLIGFF 59
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESE 109
R+ L KPI +FDG +K R R R EN I +E
Sbjct: 60 RRICKLLFLRTKPIFVFDGATPALKRRTVIARRRQR-ENAQTKIRKTAE 107
Score = 41 (19.5 bits), Expect = 2.4e-10, Sum P(3) = 2.4e-10
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 327 EVSDNSHLVVGQNSHLKNFKPESERKKLDLP 357
E DN+ ++S + N K +++RK+L+ P
Sbjct: 1236 ETEDNN--TSDKDSPIANEKVKNKRKRLEKP 1264
Score = 41 (19.5 bits), Expect = 2.4e-10, Sum P(3) = 2.4e-10
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 310 KGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHLKNFKPESERKKLDLPVQKNLLTKKFT 368
KGI G T+ +++ + H V +N H+ P L Q +L T+KF+
Sbjct: 1081 KGIISGASTDDTE-EIKQIFMDQHRKVSKNWHIPLTFPSEAVISAYLNPQVDLSTEKFS 1138
>MGI|MGI:2443149 [details] [associations]
symbol:Gen1 "Gen homolog 1, endonuclease (Drosophila)"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
MGI:MGI:2443149 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 HSSP:P39748
GeneTree:ENSGT00640000091478 KO:K15338 CTD:348654
HOGENOM:HOG000060137 HOVERGEN:HBG096402 OMA:FFRISYL
OrthoDB:EOG4T1HKR EMBL:AK030995 EMBL:AK031077 EMBL:AK158255
EMBL:BC090653 EMBL:BC138157 EMBL:BC138158 IPI:IPI00624763
IPI:IPI00880889 RefSeq:NP_796305.3 UniGene:Mm.215295
ProteinModelPortal:Q8BMI4 STRING:Q8BMI4 PhosphoSite:Q8BMI4
PRIDE:Q8BMI4 Ensembl:ENSMUST00000166117 GeneID:209334
KEGG:mmu:209334 UCSC:uc007nav.1 UCSC:uc007naw.1 InParanoid:B2RR04
ChiTaRS:GEN1 NextBio:372631 Bgee:Q8BMI4 CleanEx:MM_GEN1
Genevestigator:Q8BMI4 Uniprot:Q8BMI4
Length = 908
Score = 181 (68.8 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 59/248 (23%), Positives = 112/248 (45%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MG+ L +L+ + IH+++L G +AVD W+ + A + + + G H+
Sbjct: 1 MGVNDLWQILEPVKQHIHLQDLSGKTIAVDLSLWVCE-AQTVKKMI--GTVKKPHLRNLF 57
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
R++ L VK + + +G +K + +KR ++R ++ + G S F
Sbjct: 58 FRISYLTQMNVKLVFVMEGEPPMLKADVISKRTQTRYGPSGKS-RSQKTGRS----HF-- 110
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
S+ E +++L+ + ++ A EA+A +L S V+ +T D D +G
Sbjct: 111 ------KSVLRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQ 164
Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYL-QSLPGMGLKRA 239
+ + C + K S G + L+ + +L GCDYL + +PG+G ++A
Sbjct: 165 TVYRNFTMNTKDPHVDCYTISSIK--SKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQA 222
Query: 240 HALISKFK 247
L+ FK
Sbjct: 223 LKLLQIFK 230
>UNIPROTKB|J9P9A3 [details] [associations]
symbol:BIVM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0003697 "single-stranded
DNA binding" evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 GeneTree:ENSGT00640000091542 EMBL:AAEX03013354
RefSeq:XP_003639860.1 Ensembl:ENSCAFT00000047499 GeneID:100855935
KEGG:cfa:100855935 Uniprot:J9P9A3
Length = 1185
Score = 130 (50.8 bits), Expect = 7.9e-10, Sum P(3) = 7.9e-10
Identities = 36/131 (27%), Positives = 64/131 (48%)
Query: 122 AVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSR 181
A ++ + E ++L+ + YI AP EA+AQ L ++ Q IT+DSD+ FG
Sbjct: 762 AATVTGQMFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARH 821
Query: 182 I---IFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKR 238
+ F +KF VE+ + + L G + L+ + L G DY + +P +G
Sbjct: 822 VYKNFFNKNKF---VEYY-QYVDFHNQL---GLDRNKLINLAYLLGSDYTEGIPTVGCVT 874
Query: 239 AHALISKFKSY 249
A ++++F +
Sbjct: 875 AMEILNEFPGH 885
Score = 110 (43.8 bits), Expect = 7.9e-10, Sum P(3) = 7.9e-10
Identities = 33/99 (33%), Positives = 51/99 (51%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSR-HIDYC 59
MG+ GL LL+ + + LEG +AVD WL++ AL R+ C G H+
Sbjct: 1 MGVHGLWKLLECSGRQVSPETLEGKILAVDISIWLNQ-ALRGVRD-CHGNSIGNAHLLTL 58
Query: 60 MHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKE 98
HR+ L + ++PI +FDG P+ +Q + R RK+
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGDA-PLLKKQTLAKRRHRKD 96
Score = 38 (18.4 bits), Expect = 7.9e-10, Sum P(3) = 7.9e-10
Identities = 18/81 (22%), Positives = 35/81 (43%)
Query: 586 TETDEAKFGANISHLGSYSEIAEKSMERFVSVISKYRCTSGSRASGLRAPLKDVRNTCTV 645
T+TDE+ F + L + + ++ F + + R A G+R+ + TC +
Sbjct: 972 TKTDESLFPV-LKQLNAQQ--TQLRIDSFFRLAQQER----QDAKGIRSQRLNRAVTCML 1024
Query: 646 RSPVAVDFSQFEYVPKSRKSD 666
R S+ E V + ++D
Sbjct: 1025 RKEREAAASEIEAVSVAMEND 1045
>UNIPROTKB|E1B8D0 [details] [associations]
symbol:GEN1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006281 "DNA repair" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 OMA:FFRISYL EMBL:DAAA02031803
IPI:IPI00842908 PRIDE:E1B8D0 Ensembl:ENSBTAT00000043571
Uniprot:E1B8D0
Length = 914
Score = 160 (61.4 bits), Expect = 8.8e-10, Sum P(3) = 8.8e-10
Identities = 59/248 (23%), Positives = 106/248 (42%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MG+ L +L+ + +H+ L G +AVD W+ + A + + + G H+
Sbjct: 1 MGVNDLWQILEPVKQHVHLHSLSGKTIAVDLSLWVCE-AQTVKKMI--GTVMKPHLRNLF 57
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
R++ L VK + + +G +K + +KR + R + + G S F
Sbjct: 58 FRISYLTLMDVKLVFVMEGEPPHLKADVISKRNQVRYGPSGKTWS-QKTGRS----HF-- 110
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
S+ E + +L+ + ++ A EA+A +L S V+ +T D D +G
Sbjct: 111 ------KSVLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDAFLYGAQ 164
Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYL-QSLPGMGLKRA 239
+ + C + K S G + L+ + IL GCDYL + +PG+G ++A
Sbjct: 165 TVYRNFTMNTKDPHVDCYTMSSIK--SKLGLNRDALVGLAILLGCDYLPKGVPGVGKEQA 222
Query: 240 HALISKFK 247
LI K
Sbjct: 223 LKLIKILK 230
Score = 56 (24.8 bits), Expect = 8.8e-10, Sum P(3) = 8.8e-10
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 503 KDDQENKQEKLVVENDAAIDMSENTGLQSAHFDYSYLKGTAIKRKTSLIDSVHTDKMGS 561
++D+ N L V + + TG +A D S G I RKT SV D++ S
Sbjct: 743 ENDKSNTSVPLSVNDPGTKTSNVRTGPPNATLDRSRKAGIQIARKTVRKKSVCLDRLSS 801
Score = 56 (24.8 bits), Expect = 8.8e-10, Sum P(3) = 8.8e-10
Identities = 36/156 (23%), Positives = 63/156 (40%)
Query: 274 AVLTFQHQRVYDPKTEDIVHLSCISDNI---GNDLDFLAKGI-AIGDLDPFTQLPFQEVS 329
A LT Q Q + P++ + + IS ++ + + I A+ DL T + ++ S
Sbjct: 538 ACLTAQEQLISSPRSLAMQQIKDISKSLIAESSQPSTSSHNISAVADLHLST-IDWEGTS 596
Query: 330 DNSHLVVGQNSHLKNFKPESERKKLDL----PVQKNLLTKKFTTPRISPNHFSPEETSSL 385
+ + +N+ K E E D P Q ++ TT S N S +
Sbjct: 597 FSKSPAISRNTFTHGLKSELETAIPDSFKNNPEQLCCEAERHTT---SVNKLSCWDLQKT 653
Query: 386 SPGEHHTAEASCDISCQSSSRMELETVGNFPHNSSE 421
+P EH + S D+ Q E + ++P N+ E
Sbjct: 654 NPEEHLLSGIS-DLHLQDLPLKERVLIKSYPQNTVE 688
Score = 51 (23.0 bits), Expect = 2.8e-09, Sum P(3) = 2.8e-09
Identities = 19/77 (24%), Positives = 33/77 (42%)
Query: 420 SEKNCFASEVP---------EFSASPSREMENERNA-EHTSLPQFCR----SIRNPCPAL 465
SEK+C+++ P + P ++ERN + ++C R PC
Sbjct: 243 SEKSCYSNSQPVLVNKLAHCSVCSHPGSSKDHERNGCKLCQTDRYCEPHDYEYRCPCEWH 302
Query: 466 RKEHENK-NCTDSVVGK 481
R EHE + N ++ + K
Sbjct: 303 RTEHERQLNAVENNIKK 319
Score = 39 (18.8 bits), Expect = 4.5e-08, Sum P(3) = 4.5e-08
Identities = 20/71 (28%), Positives = 30/71 (42%)
Query: 372 ISPNHFSPEETSSLSPGEHHTAEASCDISCQSSSRMELETVGNFPHNSSEKNCFASEVPE 431
ISP SPEE+ S S AE D +C ++ + + + K+ S + E
Sbjct: 513 ISPCSASPEESISTSLNVLLLAE---DAACLTAQEQLISSPRSLAMQQI-KDISKSLIAE 568
Query: 432 FSASPSREMEN 442
S+ PS N
Sbjct: 569 -SSQPSTSSHN 578
Score = 38 (18.4 bits), Expect = 5.6e-08, Sum P(3) = 5.6e-08
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 355 DLPVQKNLLTKKFTTPRISPN 375
DLP+++ +L K + + P+
Sbjct: 670 DLPLKERVLIKSYPQNTVEPD 690
>UNIPROTKB|E1C3E4 [details] [associations]
symbol:Gga.42587 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 SMART:SM00484 SMART:SM00485 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081
GeneTree:ENSGT00640000091478 EMBL:AADN02018598 IPI:IPI00818388
Ensembl:ENSGALT00000036876 OMA:HVESYCM Uniprot:E1C3E4
Length = 246
Score = 164 (62.8 bits), Expect = 9.6e-10, P = 9.6e-10
Identities = 63/261 (24%), Positives = 116/261 (44%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVD---TYSWL-HKGALSCSRELCKGLPTSR-- 54
MG+ L +L+ + P+ + L+G +AVD TY ++ +K R LP ++
Sbjct: 1 MGVNNLWQILEPVRQPVSLSSLKGKTLAVDLRFTYMYICYKNRTCLKRSAYPLLPMTKIQ 60
Query: 55 -HIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSS 113
+++ R + G+K + + +G +K + +KR N R G +
Sbjct: 61 LNLENLFFRYSFFTSMGIKLVFVMEGEAPKLKADTMSKR------NEIRYGASNKHGVAR 114
Query: 114 ASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSD 173
++ SI E +Q+L+ V ++ A EA+A +L V+ IT D D
Sbjct: 115 TGRSSFK-------SILKECLQLLECLGVPWVQAAGEAEAMCAYLNAKGHVDGCITNDGD 167
Query: 174 LIPFGCSRII--FKMD-KFGQGVEFQ-------CSMLQKNKDLSFGGFTKQMLLEMCILS 223
+ +G + F M+ K Q ++ C + K+ G ++ L+ + +L
Sbjct: 168 VFLYGAQTVYRNFAMNSKSSQKCTWKLKEPHLDCYTMSSIKEKL--GCDRESLIGLAVLL 225
Query: 224 GCDYL-QSLPGMGLKRAHALI 243
GCDYL + +PG+G ++A LI
Sbjct: 226 GCDYLPKGIPGVGKEQALKLI 246
>UNIPROTKB|F1SCS5 [details] [associations]
symbol:GEN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006281 "DNA repair" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 OMA:FFRISYL EMBL:CU468500
Ensembl:ENSSSCT00000009424 Uniprot:F1SCS5
Length = 914
Score = 167 (63.8 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 58/248 (23%), Positives = 108/248 (43%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MG+ L +L+ + IH+ L G +AVD W+ + A + + + G H+
Sbjct: 1 MGVNDLWQVLEPVKQHIHLNSLAGKTIAVDLSLWVCE-AQTVKKMI--GTVMKPHLRNLF 57
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
R++ L VK + + +G +K + NKR + R G S ++ ++
Sbjct: 58 FRISCLTLMDVKLVFVMEGEPPKLKADVINKRNQIRY------------GPSGKTWS-HK 104
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
S+ E + +L+ + ++ A EA+A +L + V+ +T D D +G
Sbjct: 105 TGRSHFKSVLKECLDMLECLGIPWVQAAGEAEAMCAYLNANGCVDGCLTNDGDAFLYGAQ 164
Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYL-QSLPGMGLKRA 239
+ + C + K++ G + L+ + IL GCDYL + +PG+G ++A
Sbjct: 165 TVYRNFTMNTKDPHVDCYTMSSIKNIL--GLDRDSLVGLAILLGCDYLPKGVPGVGKEQA 222
Query: 240 HALISKFK 247
LI K
Sbjct: 223 LKLIKTLK 230
Score = 55 (24.4 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 18/70 (25%), Positives = 33/70 (47%)
Query: 365 KKFTTPRI-SPNHFSPEETSSLSPGEHHTAEASCDISCQSSSRMELETVGN--FPHNSSE 421
KK + ++ S + PE +S H T + +C+ + S+++LET + P S
Sbjct: 465 KKQKSMKVKSKGNSLPESDDIMSFQSHMTLKPTCENFSKQDSKLDLETSPDSALPQKSIS 524
Query: 422 KNCFASEVPE 431
+ A +PE
Sbjct: 525 ASLSALLLPE 534
Score = 37 (18.1 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 13/55 (23%), Positives = 23/55 (41%)
Query: 355 DLPVQKNLLTKKFTTPRISPNHFSPEETSSLSPGEHHTAEASCDISCQSSSRMEL 409
DLP+++ + K + + S L+ EH A++S C S +L
Sbjct: 669 DLPLKERIHMKSSYPQNVEQPDVDKKTLSLLTVKEHCIADSSS--KCPSHLSKDL 721
>WB|WBGene00019004 [details] [associations]
symbol:xpg-1 species:6239 "Caenorhabditis elegans"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0009792 GO:GO:0003677 GO:GO:0006281 GO:GO:0090305
GO:GO:0004518 EMBL:FO081416 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GeneTree:ENSGT00640000091542 RefSeq:NP_491891.2
ProteinModelPortal:O44737 SMR:O44737 STRING:O44737 PaxDb:O44737
EnsemblMetazoa:F57B10.6 GeneID:186441 KEGG:cel:CELE_F57B10.6
UCSC:F57B10.6 CTD:186441 WormBase:F57B10.6 HOGENOM:HOG000019794
InParanoid:O44737 OMA:MIPQDSK NextBio:931854 Uniprot:O44737
Length = 820
Score = 113 (44.8 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 33/129 (25%), Positives = 59/129 (45%)
Query: 119 YQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFG 178
Y D +P + +L + L + +I +P EA+AQ L V+ V+++DSD+ FG
Sbjct: 458 YSDEDDKTPELYRDLQEFLTNAGIPWIESPGEAEAQCVELERLGLVDGVVSDDSDVWAFG 517
Query: 179 CSRIIFKMDKFGQGVEFQCSMLQKNKD-LSFGGFTKQMLLEMCILSGCDYLQSLPGMGLK 237
+ M + V+ N+D ++ + + +LSG DY L +G
Sbjct: 518 AQHVYRHMFSKNRRVQRYGEQTTANRDNCKLFCLQREDYISIALLSGGDYCAGLVKVGAI 577
Query: 238 RAHALISKF 246
A L+S++
Sbjct: 578 GALELVSEY 586
Score = 108 (43.1 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 26/99 (26%), Positives = 53/99 (53%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGI GL +++ I ++ LEG +A+D W+++ L+ + + P H+ +
Sbjct: 1 MGITGLWKIVEPTATEIPLECLEGKKLAIDVSIWIYQAQLAYPSD--QPFP---HLRLLV 55
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKEN 99
+R++ L Y ++P+ +FDG +P Q + R +++N
Sbjct: 56 NRLSKLLFYKIRPVFVFDGPQVPPLKRQVLEARRQKRQN 94
>RGD|1559792 [details] [associations]
symbol:Gen1 "Gen endonuclease homolog 1 (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 SMART:SM00484 SMART:SM00485 RGD:1559792 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 EMBL:CH473947
PANTHER:PTHR11081 SUPFAM:SSF47807 GeneTree:ENSGT00640000091478
KO:K15338 CTD:348654 OrthoDB:EOG4T1HKR IPI:IPI00360342
RefSeq:NP_001100187.1 UniGene:Rn.162850 Ensembl:ENSRNOT00000006470
GeneID:298884 KEGG:rno:298884 NextBio:644458 Uniprot:D3ZVS5
Length = 908
Score = 177 (67.4 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 59/248 (23%), Positives = 111/248 (44%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MG+ L +L+ + IH+++L G +AVD W+ + A + + + G H+
Sbjct: 1 MGVNDLWQILEPVKQHIHLQDLCGKTIAVDLSLWVCE-AQTVKKMI--GTVMKPHLRNLF 57
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
R++ L VK + + +G +K + NKR ++R ++ + G S F
Sbjct: 58 FRISYLTQMNVKLVFVMEGEPPKLKADVMNKRTQTRYGPSGKS-RSQKTGRS----HF-- 110
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
S+ E +++L+ + ++ A EA+A +L S V+ +T D D +G
Sbjct: 111 ------KSVLRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQ 164
Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYL-QSLPGMGLKRA 239
+ + C + K S G + L+ + +L GCDYL + +PG+G ++A
Sbjct: 165 TVYRNFTMNTKDPHVDCYTVSSIK--SKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQA 222
Query: 240 HALISKFK 247
L+ K
Sbjct: 223 LKLLQILK 230
Score = 37 (18.1 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 463 PALRKEHENKNCT 475
P K+HE CT
Sbjct: 266 PGSPKDHERNGCT 278
>GENEDB_PFALCIPARUM|PF10_0080 [details] [associations]
symbol:PF10_0080 "endonuclease, putative"
species:5833 "Plasmodium falciparum" [GO:0005739 "mitochondrion"
evidence=ISS] InterPro:IPR006084 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 GO:GO:0005739 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004519 EMBL:AE014185 PANTHER:PTHR11081
SUPFAM:SSF47807 HSSP:O29975 RefSeq:XP_001347365.1
ProteinModelPortal:Q8IJW1 EnsemblProtists:PF10_0080:mRNA
GeneID:810238 KEGG:pfa:PF10_0080 EuPathDB:PlasmoDB:PF3D7_1008200
HOGENOM:HOG000283088 ProtClustDB:CLSZ2431727 Uniprot:Q8IJW1
Length = 388
Score = 156 (60.0 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 39/172 (22%), Positives = 88/172 (51%)
Query: 87 EQENKRAR-SRKENLARAIECESEGNSSASYEFYQKAV--DISPSIAHELIQVLKQQNVS 143
+Q+N + K+NL + + E + ++ ++K + I+ A+++ L +N+
Sbjct: 179 DQKNNISNICEKKNLKKKNQMEIIVDEDGIHDLFKKNIFIKINSKTANDIYNYLLLENIP 238
Query: 144 YIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSRII-FKMDKFGQGVEFQCSMLQK 202
+ +A+ + + S + + V+++D+D + FG +I F +K + + + K
Sbjct: 239 IFITKNDAEKECA-IQCSHERDIVVSDDTDALAFGAPNLIRFITNKKKRHI------INK 291
Query: 203 NKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAHALISKFKSYDKVIK 254
+ L+ + ++ CILSGCDY +PG+G +AH +I K+K+ + ++
Sbjct: 292 EELLNELNINYEQFIDFCILSGCDYSAKIPGIGPVKAHEIIKKYKTIETFLE 343
>UNIPROTKB|Q8IJW1 [details] [associations]
symbol:PF10_0080 "Endonuclease, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005739 "mitochondrion"
evidence=ISS] InterPro:IPR006084 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 GO:GO:0005739 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004519 EMBL:AE014185 PANTHER:PTHR11081
SUPFAM:SSF47807 HSSP:O29975 RefSeq:XP_001347365.1
ProteinModelPortal:Q8IJW1 EnsemblProtists:PF10_0080:mRNA
GeneID:810238 KEGG:pfa:PF10_0080 EuPathDB:PlasmoDB:PF3D7_1008200
HOGENOM:HOG000283088 ProtClustDB:CLSZ2431727 Uniprot:Q8IJW1
Length = 388
Score = 156 (60.0 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 39/172 (22%), Positives = 88/172 (51%)
Query: 87 EQENKRAR-SRKENLARAIECESEGNSSASYEFYQKAV--DISPSIAHELIQVLKQQNVS 143
+Q+N + K+NL + + E + ++ ++K + I+ A+++ L +N+
Sbjct: 179 DQKNNISNICEKKNLKKKNQMEIIVDEDGIHDLFKKNIFIKINSKTANDIYNYLLLENIP 238
Query: 144 YIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSRII-FKMDKFGQGVEFQCSMLQK 202
+ +A+ + + S + + V+++D+D + FG +I F +K + + + K
Sbjct: 239 IFITKNDAEKECA-IQCSHERDIVVSDDTDALAFGAPNLIRFITNKKKRHI------INK 291
Query: 203 NKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAHALISKFKSYDKVIK 254
+ L+ + ++ CILSGCDY +PG+G +AH +I K+K+ + ++
Sbjct: 292 EELLNELNINYEQFIDFCILSGCDYSAKIPGIGPVKAHEIIKKYKTIETFLE 343
>ZFIN|ZDB-GENE-050417-81 [details] [associations]
symbol:zgc:110269 "zgc:110269" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
ZFIN:ZDB-GENE-050417-81 GO:GO:0005739 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0004527 GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 GeneTree:ENSGT00640000091478
HOGENOM:HOG000193853 HOVERGEN:HBG000844 KO:K04799 EMBL:CR377211
EMBL:BC092837 IPI:IPI00633624 RefSeq:NP_001017611.2
UniGene:Dr.13872 ProteinModelPortal:B0UXL7 STRING:B0UXL7
Ensembl:ENSDART00000005381 GeneID:550274 KEGG:dre:550274
InParanoid:Q568J1 OMA:ELVWTEP OrthoDB:EOG4FFD2P NextBio:20879536
ArrayExpress:B0UXL7 Bgee:B0UXL7 Uniprot:B0UXL7
Length = 350
Score = 155 (59.6 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 44/157 (28%), Positives = 79/157 (50%)
Query: 132 ELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSRIIFKMD--KF 189
E +++L V I AP EA+A LA V AV +ED D + FG + ++ +++ +
Sbjct: 112 ECLRLLHLMGVPCIKAPGEAEALCAHLAKIGTVNAVASEDMDTLAFGGTVLLRQLNAKRD 171
Query: 190 GQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAHALISKFKSY 249
+ E+ L + L + F +++CIL GCDY + G+G RA LI + +
Sbjct: 172 SEITEYSLPKLLEALQLKYEEF-----VDLCILLGCDYCDKIGGLGPSRALKLIKEHHTI 226
Query: 250 DKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDP 286
+ V++H+ T +P ++ + L F+ ++ DP
Sbjct: 227 EGVMEHVNRKTHPIPLNWQYKDARK-LFFETPKIDDP 262
>UNIPROTKB|Q17RS7 [details] [associations]
symbol:GEN1 "Flap endonuclease GEN homolog 1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K15338 EMBL:AK131387
EMBL:AC093731 EMBL:BC117204 EMBL:BC117206 IPI:IPI00295818
RefSeq:NP_001123481.1 RefSeq:NP_872431.3 UniGene:Hs.467793
ProteinModelPortal:Q17RS7 SMR:Q17RS7 STRING:Q17RS7
PhosphoSite:Q17RS7 DMDM:290457644 PRIDE:Q17RS7 DNASU:348654
Ensembl:ENST00000317402 Ensembl:ENST00000381254 GeneID:348654
KEGG:hsa:348654 UCSC:uc002rct.2 CTD:348654 GeneCards:GC02P017935
H-InvDB:HIX0001847 HGNC:HGNC:26881 MIM:612449 neXtProt:NX_Q17RS7
PharmGKB:PA162389359 HOGENOM:HOG000060137 HOVERGEN:HBG096402
InParanoid:Q17RS7 OMA:FFRISYL OrthoDB:EOG4T1HKR PhylomeDB:Q17RS7
GenomeRNAi:348654 NextBio:99407 ArrayExpress:Q17RS7 Bgee:Q17RS7
CleanEx:HS_GEN1 Genevestigator:Q17RS7 Uniprot:Q17RS7
Length = 908
Score = 163 (62.4 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 60/263 (22%), Positives = 114/263 (43%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MG+ L +L+ + I ++ L G +AVD W+ + A + + + G H+
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCE-AQTVKKMM--GSVMKPHLRNLF 57
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
R++ L VK + + +G +K + +KR +SR + ++ + G S F
Sbjct: 58 FRISYLTQMDVKLVFVMEGEPPKLKADVISKRNQSRYGSSGKSWS-QKTGRS----HF-- 110
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
S+ E + +L+ + ++ A EA+A +L V+ +T D D +G
Sbjct: 111 ------KSVLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQ 164
Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYL-QSLPGMGLKRA 239
+ + C + K S G + L+ + IL GCDYL + +PG+G ++A
Sbjct: 165 TVYRNFTMNTKDPHVDCYTMSSIK--SKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQA 222
Query: 240 HALISKFKSYDKVIKHLKYSTVS 262
LI K + + +++ S
Sbjct: 223 LKLIQILKGQSLLQRFNRWNETS 245
Score = 46 (21.3 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 27/127 (21%), Positives = 47/127 (37%)
Query: 352 KKLDLPVQKNLLTKKFTTPRISPNHFSPEETSSLSPGEHHTAEASCDISCQSSSRMELET 411
+K+D+ + +L KK H S E+++ + +T + S Q + +
Sbjct: 779 RKVDMQTTRKILMKKSVC---LDRHSSDEQSAPVFGKAKYTTQRMKH-SSQKHNSSHFKE 834
Query: 412 VGNFPHNS-SEKNCFASEVPEFSASPSREMENERNAEHTSLPQFCRSIRNPCPALRKEHE 470
G HN S E + R E N E + P +S + +KE+
Sbjct: 835 SG---HNKLSSPKIHIKETEQCV----RSYETAEN-EESCFPDSTKSSLSSLQCHKKENN 886
Query: 471 NKNCTDS 477
+ C DS
Sbjct: 887 SGTCLDS 893
Score = 44 (20.5 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 371 RISPNHFS-PEETSSLSPGEHHTAEASCDISCQSSSRM 407
RI P + PE +S H T + +C+I + +S++
Sbjct: 470 RIKPKENNLPEPDEVMSFQSHMTLKPTCEIFHKQNSKL 507
>UNIPROTKB|E2QU72 [details] [associations]
symbol:GEN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 KO:K15338 CTD:348654 OMA:FFRISYL
EMBL:AAEX03010748 RefSeq:XP_540093.2 Ensembl:ENSCAFT00000006025
GeneID:482980 KEGG:cfa:482980 NextBio:20857444 Uniprot:E2QU72
Length = 908
Score = 162 (62.1 bits), Expect = 9.7e-08, Sum P(2) = 9.7e-08
Identities = 67/266 (25%), Positives = 120/266 (45%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MG+ L +L+ + IH+ L G +AVD W+ + A + + + G H+
Sbjct: 1 MGVNDLWQILEPVKQHIHLHHLCGKTIAVDLSLWVCE-AQTVKKMI--GTVMKPHLRNLF 57
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
R++ L VK + + +G P K++ + SR+ + G S ++ Q
Sbjct: 58 FRISYLTLMDVKLVFVMEGE--PPKLKAD---VISRRNQIRY-------GPSGKTWS--Q 103
Query: 121 KAVDIS-PSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGC 179
KA S+ E + +L+ + ++ A EA+A +L S V+ +T D D +G
Sbjct: 104 KAGRSHFKSVLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGA 163
Query: 180 SRII--FKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYL-QSLPGMGL 236
+ F M+ V+ + K+K L G + L+ + IL GCDYL + +PG+G
Sbjct: 164 QTVYRNFTMNTKDPHVDCYTASSIKSK-L---GLDRDALVGLAILLGCDYLPKGVPGVGK 219
Query: 237 KRAHALISKFKSYDKVIKHLKYSTVS 262
++A LI K + + ++S S
Sbjct: 220 EQALKLIQILKGQSLLQRFTQWSEES 245
Score = 46 (21.3 bits), Expect = 9.7e-08, Sum P(2) = 9.7e-08
Identities = 13/61 (21%), Positives = 26/61 (42%)
Query: 373 SPNHFSPEETSSLSPGEHHTAEASCDISCQSSSRMELETV--GNFPHNSSEKNCFASEVP 430
S + PE + +S +C++ + +S++ LE G P S + + +P
Sbjct: 475 SKENRQPESDNMMSFQSQMNLNPTCEVFSKQNSKLSLEITPDGALPQKSISASLNSLMLP 534
Query: 431 E 431
E
Sbjct: 535 E 535
>UNIPROTKB|E1C986 [details] [associations]
symbol:Gga.42587 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 SMART:SM00279 SMART:SM00484 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081
GeneTree:ENSGT00640000091478 EMBL:AADN02018598 IPI:IPI00680396
Ensembl:ENSGALT00000031592 Uniprot:E1C986
Length = 190
Score = 137 (53.3 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 49/200 (24%), Positives = 87/200 (43%)
Query: 49 GLPTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECES 108
G+ T H+ R + G+K + + +G +K + +KR N R
Sbjct: 3 GVVTKPHLRNLFFRYSFFTSMGIKLVFVMEGEAPKLKADTMSKR------NEIRYGASNK 56
Query: 109 EGNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVI 168
G + ++ SI E +Q+L+ V ++ A EA+A +L V+ I
Sbjct: 57 HGVARTGRSSFK-------SILKECLQLLECLGVPWVQAAGEAEAMCAYLNAKGHVDGCI 109
Query: 169 TEDSDLIPFGCSRII--FKMD-KFG-QGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSG 224
T D D+ +G + F M+ K + C + K+ G ++ L+ + +L G
Sbjct: 110 TNDGDVFLYGAQTVYRNFAMNSKLSFKEPHLDCYTMSSIKEKL--GCDRESLIGLAVLLG 167
Query: 225 CDYL-QSLPGMGLKRAHALI 243
CDYL + +PG+G ++A LI
Sbjct: 168 CDYLPKGIPGVGKEQALKLI 187
>DICTYBASE|DDB_G0281151 [details] [associations]
symbol:DDB_G0281151 "DNA repair XPGC family protein"
species:44689 "Dictyostelium discoideum" [GO:0090305 "nucleic acid
phosphodiester bond hydrolysis" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR006084
InterPro:IPR006086 Pfam:PF00867 dictyBase:DDB_G0281151
EMBL:AAFI02000040 GO:GO:0006281 GO:GO:0004527 GO:GO:0090305
PANTHER:PTHR11081 eggNOG:COG5366 InterPro:IPR022039
InterPro:IPR022040 Pfam:PF12246 Pfam:PF12247 RefSeq:XP_640845.1
ProteinModelPortal:Q54UD1 PRIDE:Q54UD1 EnsemblProtists:DDB0233015
GeneID:8622901 KEGG:ddi:DDB_G0281151 InParanoid:Q54UD1 OMA:TIFTAST
ProtClustDB:CLSZ2729045 Uniprot:Q54UD1
Length = 748
Score = 155 (59.6 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 67/286 (23%), Positives = 119/286 (41%)
Query: 27 VAVDTYSWLHKGALSCSRELCKG-LPTSRHIDYCMHRVNLLRHYGVKPILIFDG-GLLPM 84
+ ++ WL K + ++ G LP + +D +N + +KP +F+G +L
Sbjct: 27 IGIEAKPWLLKLPVQEPFQITMGGLPLTL-VDTLEKELNKFKKANIKPFFLFNGLSVLKE 85
Query: 85 KIEQENKRARSRKENLARAIECESEGN-SSASYEFYQKAVDISPSIAHELIQVLKQQNVS 143
+ Q N+R+ + L+ A + SSA F ++ S H +IQ KQ+ +
Sbjct: 86 RFAQTNQRS----QKLSTAWDAYYRAQYSSAEKCFQDSEKNLLLSFIHFIIQYFKQKGIE 141
Query: 144 YIVAPYEADAQMTFLAVSKQVEAV--ITEDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQ 201
+ APY A Q+ + Q + + +L+ +G R+I +D + +G +
Sbjct: 142 FFEAPYFAGPQLALFSEPSQKNYLNAVYGSQELLLYGVYRLITDID-YEKGSYTWVDLKS 200
Query: 202 KNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAHALISK-----FKSYDKVIKHL 256
DL G T ++ C+L G +Y Q LP + + K K+Y I+ +
Sbjct: 201 ILYDL---GITHDQFIDACLLCGFEYCQQLPFLNSPQGRDCTFKTVCDMVKAYHNGIETI 257
Query: 257 KYSTVSVPPFYE---ESFGKAV------LTFQHQRVYDPKTEDIVH 293
+ + P YE E F K L F V +P +DI +
Sbjct: 258 RAYLPPMSPQYENYMEQFIKTKCLVHNHLLFYSSNVCEPLFKDIYY 303
>GENEDB_PFALCIPARUM|PFB0265c [details] [associations]
symbol:PFB0265c "DNA repair endonuclease,
putative" species:5833 "Plasmodium falciparum" [GO:0003684 "damaged
DNA binding" evidence=ISS] [GO:0004519 "endonuclease activity"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003684 GO:GO:0006281 GO:GO:0004519 EMBL:AE001362
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 HSSP:O29975 PIR:E71619
RefSeq:XP_001349570.1 ProteinModelPortal:O96154
EnsemblProtists:PFB0265c:mRNA GeneID:812652 KEGG:pfa:PFB0265c
EuPathDB:PlasmoDB:PF3D7_0206000 HOGENOM:HOG000284253
ProtClustDB:CLSZ2514755 Uniprot:O96154
Length = 1516
Score = 132 (51.5 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 34/136 (25%), Positives = 71/136 (52%)
Query: 123 VDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSRI 182
++I+ + ++ +L + YI +P EA+AQ ++L +A+I++DSD++ F +
Sbjct: 1205 IEINDEMNDDIKLLLNFFGIPYIQSPCEAEAQCSYLNNKNYCDAIISDDSDVLVFSGKTV 1264
Query: 183 IFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAHAL 242
I + VE + +K G ++ L+ + +L GCDY + G+G+ A +
Sbjct: 1265 IKNFFNKKKTVE----VYEKKAIEEKLGLYQEELINISLLCGCDYTIGVHGIGIVNALEI 1320
Query: 243 ISKFKSYD--KVIKHL 256
I F +++ K++K +
Sbjct: 1321 IKAFPNFEDLKILKDI 1336
Score = 70 (29.7 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 20/72 (27%), Positives = 34/72 (47%)
Query: 55 HIDYCMHRVNLLRHYGVKPILIFDGGLLPMK---IEQENKRARSRKENLARAIECESEGN 111
H+ + R+ L +Y ++PI IFDG +K I Q N + R+ +E + E
Sbjct: 82 HLYFFFLRICKLLYYNIRPIFIFDGNPPELKRKTIFQRNIKKRNYEEKFKKTAE------ 135
Query: 112 SSASYEFYQKAV 123
Y +YQ+ +
Sbjct: 136 -KLVYNYYQRTL 146
Score = 53 (23.7 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 9/37 (24%), Positives = 22/37 (59%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHK 37
MG++GL ++ + + ++ + G +A+D WL++
Sbjct: 1 MGVKGLWSIVSPVGVRVNPEIFTGKRIAIDVSIWLYE 37
>UNIPROTKB|O96154 [details] [associations]
symbol:PFB0265c "DNA repair endonuclease, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0004519 "endonuclease activity"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003684 GO:GO:0006281 GO:GO:0004519 EMBL:AE001362
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 HSSP:O29975 PIR:E71619
RefSeq:XP_001349570.1 ProteinModelPortal:O96154
EnsemblProtists:PFB0265c:mRNA GeneID:812652 KEGG:pfa:PFB0265c
EuPathDB:PlasmoDB:PF3D7_0206000 HOGENOM:HOG000284253
ProtClustDB:CLSZ2514755 Uniprot:O96154
Length = 1516
Score = 132 (51.5 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 34/136 (25%), Positives = 71/136 (52%)
Query: 123 VDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSRI 182
++I+ + ++ +L + YI +P EA+AQ ++L +A+I++DSD++ F +
Sbjct: 1205 IEINDEMNDDIKLLLNFFGIPYIQSPCEAEAQCSYLNNKNYCDAIISDDSDVLVFSGKTV 1264
Query: 183 IFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAHAL 242
I + VE + +K G ++ L+ + +L GCDY + G+G+ A +
Sbjct: 1265 IKNFFNKKKTVE----VYEKKAIEEKLGLYQEELINISLLCGCDYTIGVHGIGIVNALEI 1320
Query: 243 ISKFKSYD--KVIKHL 256
I F +++ K++K +
Sbjct: 1321 IKAFPNFEDLKILKDI 1336
Score = 70 (29.7 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 20/72 (27%), Positives = 34/72 (47%)
Query: 55 HIDYCMHRVNLLRHYGVKPILIFDGGLLPMK---IEQENKRARSRKENLARAIECESEGN 111
H+ + R+ L +Y ++PI IFDG +K I Q N + R+ +E + E
Sbjct: 82 HLYFFFLRICKLLYYNIRPIFIFDGNPPELKRKTIFQRNIKKRNYEEKFKKTAE------ 135
Query: 112 SSASYEFYQKAV 123
Y +YQ+ +
Sbjct: 136 -KLVYNYYQRTL 146
Score = 53 (23.7 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 9/37 (24%), Positives = 22/37 (59%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHK 37
MG++GL ++ + + ++ + G +A+D WL++
Sbjct: 1 MGVKGLWSIVSPVGVRVNPEIFTGKRIAIDVSIWLYE 37
>UNIPROTKB|Q64MA3 [details] [associations]
symbol:RAD "Flap endonuclease GEN-like 1" species:39947
"Oryza sativa Japonica Group" [GO:0003690 "double-stranded DNA
binding" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009555
"pollen development" evidence=IMP] [GO:0048256 "flap endonuclease
activity" evidence=IDA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0009555 GO:GO:0046872
GO:GO:0006281 GO:GO:0003690 GO:GO:0003697 EMBL:CM000142
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 HSSP:P39748
GO:GO:0048256 EMBL:AB158320 EMBL:AB194139 EMBL:AP006859
ProteinModelPortal:Q64MA3 EnsemblPlants:LOC_Os09g35000.1
KEGG:dosa:Os09t0521900-01 Gramene:Q64MA3 OMA:LCAQLNS Uniprot:Q64MA3
Length = 629
Score = 148 (57.2 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 70/272 (25%), Positives = 115/272 (42%)
Query: 1 MGIQGLL-PLLKSIMIPIHIKELEGCCVAVDTYSWL--HKGALSCSRELCKGLPTSRHID 57
MG+ G LLK L G VAVD W+ H A+ +R LP R +
Sbjct: 1 MGVGGSFWDLLKPYARHEGAGYLRGRRVAVDLSFWVVSHSAAIR-ARSPHARLPHLRTLF 59
Query: 58 YCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRA-RSRKENLARAIECESEGNSSASY 116
+ ++L G P+ + DG P+K + R R +LA E+E ++ A
Sbjct: 60 F--RTLSLFSKMGAFPVFVVDGQPSPLKSQVRAARFFRGSGMDLAALPSTEAEASADALV 117
Query: 117 EFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIP 176
+ + + + + +++L+ + + A E +A L V+A IT DSD
Sbjct: 118 Q--PRNAKFTRYV-EDCVELLEYLGMPVLRAKGEGEALCAQLNNQGHVDACITSDSDAFL 174
Query: 177 FGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFG-GFTKQMLLEMCILSGCDY-LQSLPGM 234
FG +I K+ + F+C + D+ G G ++ ++ M +L G D+ L +PG
Sbjct: 175 FGAKTVI-KVLRSNCKEPFECYNMA---DIESGLGLKRKQMVAMALLVGSDHDLHGVPGF 230
Query: 235 GLKRAHALISKFKSYDKVIKHLKYSTVSVPPF 266
G + A + F D V+ L V PF
Sbjct: 231 GPETALRFVQLFDE-DNVLAKLYEIGKGVYPF 261
>UNIPROTKB|I3L3E9 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00867 SMART:SM00279
GO:GO:0003677 GO:GO:0006281 GO:GO:0090305 GO:GO:0004518
PANTHER:PTHR11081 SUPFAM:SSF47807 HGNC:HGNC:3650 ChiTaRS:FEN1
EMBL:AP002380 Ensembl:ENST00000535307 Uniprot:I3L3E9
Length = 154
Score = 117 (46.2 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 210 GFTKQMLLEMCILSGCDYLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEE 269
G ++ +++CIL G DY +S+ G+G KRA LI K KS +++++ L + VP +
Sbjct: 25 GLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLH 84
Query: 270 SFGKAVLTFQHQRVYDPKTEDI 291
+A F V DP++ ++
Sbjct: 85 K--EAHQLFLEPEVLDPESVEL 104
>FB|FBgn0002887 [details] [associations]
symbol:mus201 "mutagen-sensitive 201" species:7227
"Drosophila melanogaster" [GO:0006284 "base-excision repair"
evidence=ISS] [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=ISS] [GO:0006289
"nucleotide-excision repair" evidence=IEA;NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 EMBL:AE014134
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 InterPro:IPR003903
SMART:SM00726 PROSITE:PS50330 GO:GO:0006289 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 PANTHER:PTHR11081:SF1
OMA:VYKNMFN GeneTree:ENSGT00640000091542 RefSeq:NP_001027232.1
UniGene:Dm.3099 ProteinModelPortal:Q4LDP6 SMR:Q4LDP6 STRING:Q4LDP6
PaxDb:Q4LDP6 PRIDE:Q4LDP6 EnsemblMetazoa:FBtr0005673 GeneID:3772069
KEGG:dme:Dmel_CG10890 UCSC:CG10890-RA CTD:3772069
FlyBase:FBgn0002887 InParanoid:Q4LDP6 OrthoDB:EOG4H44JN
PhylomeDB:Q4LDP6 NextBio:852313 ArrayExpress:Q4LDP6 Uniprot:Q4LDP6
Length = 1257
Score = 145 (56.1 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 49/184 (26%), Positives = 87/184 (47%)
Query: 71 VKPILIFDGGLLPMKIEQENKRARSRKENLARAI-ECESEGNSSASYEFYQKAVDISPSI 129
V P I +K ++ ++ + NLA+ E E E N + + IS +
Sbjct: 826 VDPEEIIKDAAEALKSQKTSEELQELATNLAQERKELEIERNRQD-----RMGMSISQRM 880
Query: 130 AHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSRIIFKMDKF 189
+ + ++L+ + YIVAP EA+AQ FL + IT+DSD+ FG R ++K + F
Sbjct: 881 SIDCQELLRLFGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFG-GRTVYK-NFF 938
Query: 190 GQG---VEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAHALISKF 246
Q +EF+ +++ + + G L+++ L G DY + G+G A +++ F
Sbjct: 939 AQNKHVMEFRAEQIEQTFNCNRG-----KLIQLACLVGSDYTTGIHGIGAVTALEILASF 993
Query: 247 KSYD 250
D
Sbjct: 994 SGQD 997
Score = 50 (22.7 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAV 29
MG+ GL L++ P+ ++ LEG +AV
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAV 29
>UNIPROTKB|E1BC95 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0009650 "UV protection" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005675 "holo TFIIH
complex" evidence=IEA] [GO:0004520 "endodeoxyribonuclease activity"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0000405 "bubble DNA binding" evidence=IEA]
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0003697
GO:GO:0090305 GO:GO:0004519 GO:GO:0006289 PANTHER:PTHR11081
SUPFAM:SSF47807 PANTHER:PTHR11081:SF1 TIGRFAMs:TIGR00600
GeneTree:ENSGT00640000091542 EMBL:DAAA02034800 IPI:IPI00923951
Ensembl:ENSBTAT00000061115 OMA:MSNISIW ArrayExpress:E1BC95
Uniprot:E1BC95
Length = 1615
Score = 130 (50.8 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 36/131 (27%), Positives = 64/131 (48%)
Query: 122 AVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSR 181
A ++ + E ++L+ + YI AP EA+AQ L ++ Q IT+DSD+ FG
Sbjct: 1191 AATVTGQMFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARH 1250
Query: 182 I---IFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKR 238
+ F +KF VE+ + + L G + L+ + L G DY + +P +G
Sbjct: 1251 VYKNFFNKNKF---VEYY-QYVDFHNQL---GLDRNKLINLAYLLGSDYTEGIPTVGCVT 1303
Query: 239 AHALISKFKSY 249
A ++++F +
Sbjct: 1304 AMEILNEFPGH 1314
Score = 66 (28.3 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 19/68 (27%), Positives = 36/68 (52%)
Query: 34 WLHKGALSCSRELCKGLPTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRA 93
WL++ AL R+ + H+ HR+ L + ++PI +FDG P+ ++++
Sbjct: 458 WLNQ-ALKGVRDRHGNSIENAHLLTLFHRLCKLLFFRIRPIFVFDGDA-PL-LKKQTLAK 514
Query: 94 RSRKENLA 101
R K++LA
Sbjct: 515 RRHKKDLA 522
>TAIR|locus:2065294 [details] [associations]
symbol:AT2G02550 species:3702 "Arabidopsis thaliana"
[GO:0004518 "nuclease activity" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA;ISS]
InterPro:IPR006084 InterPro:IPR006085 Pfam:PF00752 PRINTS:PR00853
SMART:SM00485 EMBL:CP002685 GO:GO:0006281 GO:GO:0090305
GO:GO:0004518 PANTHER:PTHR11081 IPI:IPI00938889
RefSeq:NP_001154488.1 UniGene:At.52603 ProteinModelPortal:F4IR78
SMR:F4IR78 PRIDE:F4IR78 EnsemblPlants:AT2G02550.2 GeneID:814785
KEGG:ath:AT2G02550 ArrayExpress:F4IR78 Uniprot:F4IR78
Length = 200
Score = 125 (49.1 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 38/150 (25%), Positives = 69/150 (46%)
Query: 1 MGIQGLLPLL-KS-IMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKG--LPTSRHI 56
MG L L KS ++ I L +A+D WL++GAL+ +R+ + P S HI
Sbjct: 1 MGFTSLYSLYGKSKVLKSISFSALNSKTLAIDASMWLYRGALNNARKFLEEPTTPNSEHI 60
Query: 57 DYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIEC------ESEG 110
+ + +V V PIL+FDG LP+K + + ++L + + + +
Sbjct: 61 MFVIKKVKQFIDRNVNPILVFDGHRLPIKSPRNPIKTLEYAKDLDASAQLMAPDDPKRKD 120
Query: 111 NSSASYEFYQKAVDISPSIAHELIQVLKQQ 140
+ + +Q + I+P + H I+ + Q
Sbjct: 121 KEKNATKIFQSHIHITPYVIHVFIEYVYNQ 150
>UNIPROTKB|F1P953 [details] [associations]
symbol:BIVM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0003697 "single-stranded
DNA binding" evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 SUPFAM:SSF47807 PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 GeneTree:ENSGT00640000091542 OMA:MSNISIW
EMBL:AAEX03013354 Ensembl:ENSCAFT00000009681 Uniprot:F1P953
Length = 1600
Score = 130 (50.8 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 36/131 (27%), Positives = 64/131 (48%)
Query: 122 AVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSR 181
A ++ + E ++L+ + YI AP EA+AQ L ++ Q IT+DSD+ FG
Sbjct: 1177 AATVTGQMFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARH 1236
Query: 182 I---IFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKR 238
+ F +KF VE+ + + L G + L+ + L G DY + +P +G
Sbjct: 1237 VYKNFFNKNKF---VEYY-QYVDFHNQL---GLDRNKLINLAYLLGSDYTEGIPTVGCVT 1289
Query: 239 AHALISKFKSY 249
A ++++F +
Sbjct: 1290 AMEILNEFPGH 1300
Score = 70 (29.7 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 34 WLHKGALSCSRELCKGLPTSR-HIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKR 92
WL++ AL R+ C G H+ HR+ L + ++PI +FDG P+ +Q +
Sbjct: 459 WLNQ-ALRGVRD-CHGNSIGNAHLLTLFHRLCKLLFFRIRPIFVFDGDA-PLLKKQTLAK 515
Query: 93 ARSRKE 98
R RK+
Sbjct: 516 RRHRKD 521
Score = 38 (18.4 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 18/81 (22%), Positives = 35/81 (43%)
Query: 586 TETDEAKFGANISHLGSYSEIAEKSMERFVSVISKYRCTSGSRASGLRAPLKDVRNTCTV 645
T+TDE+ F + L + + ++ F + + R A G+R+ + TC +
Sbjct: 1387 TKTDESLFPV-LKQLNAQQ--TQLRIDSFFRLAQQER----QDAKGIRSQRLNRAVTCML 1439
Query: 646 RSPVAVDFSQFEYVPKSRKSD 666
R S+ E V + ++D
Sbjct: 1440 RKEREAAASEIEAVSVAMEND 1460
>UNIPROTKB|I3LHP7 [details] [associations]
symbol:I3LHP7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006289 "nucleotide-excision repair" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR019974 Pfam:PF00752 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 PANTHER:PTHR11081:SF1
GeneTree:ENSGT00640000091542 EMBL:CU469267
Ensembl:ENSSSCT00000025898 Uniprot:I3LHP7
Length = 159
Score = 115 (45.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 32/98 (32%), Positives = 52/98 (53%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MG+QGL LL+ ++ + LEG +AVD WL++ AL R+ + H+
Sbjct: 1 MGVQGLWKLLECSGRQVNPETLEGKILAVDISIWLNQ-ALKGVRDRHGNSIENAHLLTLF 59
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKE 98
HR+ L + ++PI +FDG P+ +Q + R RK+
Sbjct: 60 HRLCKLLFFRIRPIFVFDGDA-PLLKKQTLAKRRQRKD 96
>UNIPROTKB|F5H1Y3 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9606 "Homo
sapiens" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0007613 "memory" evidence=IEA]
[GO:0030145 "manganese ion binding" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR019974 Pfam:PF00752 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00485 GO:GO:0000287
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0030145
GO:GO:0004527 GO:GO:0090305 PANTHER:PTHR11081 GO:GO:0048256
HGNC:HGNC:3650 ChiTaRS:FEN1 EMBL:AP002380 IPI:IPI01009939
ProteinModelPortal:F5H1Y3 SMR:F5H1Y3 Ensembl:ENST00000535723
ArrayExpress:F5H1Y3 Bgee:F5H1Y3 Uniprot:F5H1Y3
Length = 165
Score = 115 (45.5 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 45/165 (27%), Positives = 75/165 (45%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDT----YSWL---HKGALSCSRELCK 48
MGIQGL L+ + P I+E + G VA+D Y +L +G E +
Sbjct: 1 MGIQGLAKLIADVA-PSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNE--E 57
Query: 49 GLPTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECES 108
G TS H+ +R + G+KP+ +FDG +K + KR+ R E + + ++
Sbjct: 58 GETTS-HLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQA 116
Query: 109 EGNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADA 153
G +F ++ V ++ E +L + Y+ AP EA+A
Sbjct: 117 AGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEA 161
>UNIPROTKB|I3LQY2 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006289 "nucleotide-excision repair" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 GO:GO:0008340
GO:GO:0043066 GO:GO:0003690 GO:GO:0003697 GO:GO:0035264
GO:GO:0004520 GO:GO:0010225 GO:GO:0000405 GO:GO:0009650
GO:GO:0005675 GO:GO:0006283 SUPFAM:SSF47807 GO:GO:0006295
GeneTree:ENSGT00640000091542 OMA:MSNISIW Ensembl:ENSSSCT00000029959
Uniprot:I3LQY2
Length = 1562
Score = 134 (52.2 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 38/131 (29%), Positives = 64/131 (48%)
Query: 122 AVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSR 181
A ++ + E ++L+ V YI AP EA+AQ L +S Q IT+DSD+ FG
Sbjct: 1149 AATVTGQMFLESQELLRLFGVPYIEAPMEAEAQCAILDLSDQTSGTITDDSDIWLFGARH 1208
Query: 182 I---IFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKR 238
+ F +KF VE+ + + L G + L+ + L G DY + +P +G
Sbjct: 1209 VYKNFFNKNKF---VEYY-QYVDFHSQL---GLDRNKLINLAYLLGSDYTEGIPTVGCVT 1261
Query: 239 AHALISKFKSY 249
A ++++F +
Sbjct: 1262 AMEILNEFPGH 1272
>CGD|CAL0003493 [details] [associations]
symbol:orf19.2664 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005844 "polysome" evidence=IEA] [GO:0044419 "interspecies
interaction between organisms" evidence=IEA] [GO:0045727 "positive
regulation of translation" evidence=IEA] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] InterPro:IPR006085
InterPro:IPR006086 Pfam:PF00752 Pfam:PF00867 CGD:CAL0003493
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 EMBL:AACQ01000023
EMBL:AACQ01000025 InterPro:IPR022039 InterPro:IPR022040
Pfam:PF12246 Pfam:PF12247 RefSeq:XP_720189.1 RefSeq:XP_720417.1
ProteinModelPortal:Q5AFE1 GeneID:3637887 GeneID:3638094
KEGG:cal:CaO19.10181 KEGG:cal:CaO19.2664 Uniprot:Q5AFE1
Length = 899
Score = 130 (50.8 bits), Expect = 0.00013, P = 0.00013
Identities = 45/195 (23%), Positives = 93/195 (47%)
Query: 49 GLPTSRHIDYCMHRVNLLRHYGVKPILIFDG--GLLPMK-----IEQENKRARSR----- 96
G P+S DY + + + + +KPI + G L K IE + + +
Sbjct: 54 GAPSSLR-DYIKSDLKVFQEFNIKPIFVISGLHTQLEQKYKNNLIEFDTQHVENTWNKVN 112
Query: 97 -KENLARAIECESEGNSSASYEFYQKAVDISP--SIAHELIQVLKQQNVSYIVAPYEADA 153
K+ + + SA+ + ++ + P S+ + +I+ + ++ Y+++PY+A
Sbjct: 113 SKDPYGHGFHHQHSHSHSANIDGFRNLNEPLPIYSMINYIIKFFLEFDIDYMISPYDASF 172
Query: 154 QMTFLAVSKQVEAVITEDSDLIPFGCSRIIFKMDKFGQGVEFQCS---MLQKNKDLSFGG 210
Q+++L S ++ ++ +DL+ + K+DKF G+EFQ + KNK L
Sbjct: 173 QLSYLYQSGIID-IVYGSTDLL-------LTKIDKFILGMEFQSKDFRFVNKNKVLKGLN 224
Query: 211 FTKQMLLEMCILSGC 225
+++ L++CI+ GC
Sbjct: 225 LSERQFLDLCIIVGC 239
>CGD|CAL0001028 [details] [associations]
symbol:orf19.652 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0008821 "crossover
junction endodeoxyribonuclease activity" evidence=IEA]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
SMART:SM00484 SMART:SM00485 CGD:CAL0001028 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K15339 EMBL:AACQ01000173
RefSeq:XP_711995.1 ProteinModelPortal:Q59QM2 GeneID:3646389
KEGG:cal:CaO19.652 Uniprot:Q59QM2
Length = 684
Score = 110 (43.8 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 54/230 (23%), Positives = 94/230 (40%)
Query: 27 VAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKI 86
VA+D YS++ + S K +++ M ++ L + I++FDG L P+K+
Sbjct: 37 VAIDAYSFIFQADHSSIIVEEKDGVLMQNV---MAKILALVGLNISVIVVFDGILKPLKL 93
Query: 87 EQENKRARSRKENLARAIECESEGNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIV 146
+ KEN + E E A Y + +P + I+ L + Y+
Sbjct: 94 KS--------KEN--EGLIYEDELQRLALISNYS---EYNPFVVQLKIE-LSNNKIEYVQ 139
Query: 147 APYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSRIIFKMDKFGQGV------------- 193
AP E +AQ +L V+ VI++D D + FG R++ +F + +
Sbjct: 140 APGEGEAQCAYLQKLGIVDYVISQDVDALVFGARRVLRNFSRFAEDIGKSPPKSSDITAR 199
Query: 194 -EFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAHAL 242
+ + + +K G T L+ + L G DY MG+ A L
Sbjct: 200 SSYYVTPVDMDKVEQETGLTTSRLVFLASLRGGDYSVGAKKMGIVNAKNL 249
Score = 66 (28.3 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 31/150 (20%), Positives = 59/150 (39%)
Query: 338 QNSHLKNFKPESERKKLDL----PVQKNLLTKK--FTTPRISPNHFSPEETSSLSPGEHH 391
+ ++K +K ++ LD P++K+ L F SP SP +++SLSP +
Sbjct: 521 EKEYIKKYKSSPQKTTLDSLEVSPIKKSTLRGPVPFELKPKSPRKLSPNKSTSLSPRKRS 580
Query: 392 TA-----EASCDISCQSSSRMELETVGNFPHNSSEKNCFASEVPEFSASPSREMENERNA 446
+ + D + E + + P + P F S + E+ERN
Sbjct: 581 KSVLLPGQKQLDFFLVKQNNKE-NAMKSIPELKPNDKAIIEDNP-FLDSFNSTKEDERNK 638
Query: 447 EHTSLPQFCRSIRNPCP-ALRKEHENKNCT 475
++ + Q NP + +E ++ T
Sbjct: 639 DNEEVKQQEEEKSNPIEKTITEESDSSELT 668
>UNIPROTKB|E1BWF2 [details] [associations]
symbol:Gga.42587 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 SMART:SM00484 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 EMBL:AADN02018598 IPI:IPI00571137
Ensembl:ENSGALT00000026572 Uniprot:E1BWF2
Length = 538
Score = 132 (51.5 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 33/121 (27%), Positives = 58/121 (47%)
Query: 128 SIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSRIIFKMD 187
SI E +Q+L+ V ++ A EA+A +L V+ IT D D+ +G +
Sbjct: 47 SILKECLQLLECLGVPWVQAAGEAEAMCAYLNAKGHVDGCITNDGDVFLYGAQTVYRNFA 106
Query: 188 KFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYL-QSLPGMGLKRAHALISKF 246
+ C + K+ G ++ L+ + +L GCDYL + +PG+G ++A LI
Sbjct: 107 MNSKEPHLDCYTMSSIKEKL--GCDRESLIGLAVLLGCDYLPKGIPGVGKEQALKLIETL 164
Query: 247 K 247
+
Sbjct: 165 R 165
Score = 39 (18.8 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 13/66 (19%), Positives = 27/66 (40%)
Query: 500 QVNKDDQENKQEKLVVENDA-AIDMSENTGLQSAHFDYSYLKGTAIKRKTSLIDSVHTDK 558
Q+ + E+K + + ++ MSE+ GL +L+ T+ + S
Sbjct: 454 QICQRSTESKDPVMAAASCVTSVQMSESVGLSLTASPCLHLQSTSTDSSVVPVQSTKNSG 513
Query: 559 MGSKLM 564
+ S +M
Sbjct: 514 VSSSVM 519
>RGD|1586176 [details] [associations]
symbol:Ercc5 "excision repair cross-complementing rodent repair
deficiency, complementation group 5" species:10116 "Rattus
norvegicus" [GO:0000405 "bubble DNA binding" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=IEA;ISO] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0004520
"endodeoxyribonuclease activity" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=ISO]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=ISO] [GO:0006289 "nucleotide-excision repair"
evidence=IEA;ISO] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0008340 "determination of
adult lifespan" evidence=ISO] [GO:0009411 "response to UV"
evidence=ISO] [GO:0009650 "UV protection" evidence=ISO] [GO:0010225
"response to UV-C" evidence=ISO] [GO:0035264 "multicellular
organism growth" evidence=ISO] [GO:0042803 "protein
homodimerization activity" evidence=ISO] [GO:0043066 "negative
regulation of apoptotic process" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0005675 "holo TFIIH complex"
evidence=ISO] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISO] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR019974 Pfam:PF00752 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 SMART:SM00485 RGD:1586176
GO:GO:0005634 GO:GO:0003697 GO:GO:0090305 GO:GO:0004519
GO:GO:0006289 PANTHER:PTHR11081 PANTHER:PTHR11081:SF1
IPI:IPI00357888 Ensembl:ENSRNOT00000014836 UCSC:RGD:1586176
ArrayExpress:D4A7R1 Uniprot:D4A7R1
Length = 242
Score = 120 (47.3 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 32/99 (32%), Positives = 53/99 (53%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MG+QGL LL+ P+ + LEG +AVD WL++ AL R+ + H+
Sbjct: 1 MGVQGLWKLLECSGRPVSPEALEGKVLAVDISIWLNQ-ALKGVRDRHGNAIENAHLLTLF 59
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKEN 99
HR+ L + ++PI +FDG P+ +Q + R +K++
Sbjct: 60 HRLCKLLFFRIRPIFVFDGDA-PLLKKQTLAKRRQKKDS 97
Score = 37 (18.1 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 11/53 (20%), Positives = 27/53 (50%)
Query: 87 EQENKRARSRKENLARAIECESEGNSSASYEFYQKAVDISPSIAHELIQVLKQ 139
E++ K+ ++R + +A++ E N A + + P + HE++ +K+
Sbjct: 161 EEDEKQWQARMDQ-KQALQEEFFHNPHAIDIESEDFSSLPPEVKHEILTDMKE 212
>UNIPROTKB|Q9HD60 [details] [associations]
symbol:ERCC5 "DNA repair protein-complementing XP-G cells"
species:9606 "Homo sapiens" [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR019974
Pfam:PF00752 PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00485 GO:GO:0005634 GO:GO:0003697 GO:GO:0090305
GO:GO:0004519 GO:GO:0006289 EMBL:AL157769 PANTHER:PTHR11081
EMBL:AF255431 EMBL:AF255433 EMBL:AF255434 EMBL:AF255435
EMBL:AF255436 UniGene:Hs.258429 HGNC:HGNC:3437
PANTHER:PTHR11081:SF1 IPI:IPI01010865 SMR:Q9HD60 STRING:Q9HD60
Ensembl:ENST00000535557 HOVERGEN:HBG054810 Uniprot:Q9HD60
Length = 232
Score = 111 (44.1 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 32/98 (32%), Positives = 51/98 (52%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MG+QGL LL+ + + LEG +AVD WL++ AL R+ + H+
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQ-ALKGVRDRHGNSIENPHLLTLF 59
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKE 98
HR+ L + ++PI +FDG P+ +Q + R RK+
Sbjct: 60 HRLCKLLFFRIRPIFVFDGDA-PLLKKQTLVKRRQRKD 96
Score = 43 (20.2 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 11/53 (20%), Positives = 26/53 (49%)
Query: 87 EQENKRARSRKENLARAIECESEGNSSASYEFYQKAVDISPSIAHELIQVLKQ 139
E+E+++ + N +A++ E N A + + P + HE++ +K+
Sbjct: 158 EEEDEKEWQERMNQKQALQEEFFHNPQAIDIESEDFSSLPPEVKHEILTDMKE 210
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.132 0.380 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 672 672 0.00099 120 3 11 22 0.41 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 88
No. of states in DFA: 615 (65 KB)
Total size of DFA: 349 KB (2174 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 67.16u 0.12s 67.28t Elapsed: 00:00:04
Total cpu time: 67.18u 0.12s 67.30t Elapsed: 00:00:04
Start: Fri May 10 14:03:23 2013 End: Fri May 10 14:03:27 2013