BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005869
(672 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QEA|Z Chain Z, Crystal Structure Of Human Exonuclease 1 Exo1 (Wt) In
Complex With Dna (Complex Ii)
pdb|3QEB|Z Chain Z, Crystal Structure Of Human Exonuclease 1 Exo1 (Wt) In
Complex With Dna And Mn2+ (Complex Iii)
Length = 352
Score = 248 bits (632), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 141/344 (40%), Positives = 210/344 (61%), Gaps = 18/344 (5%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGIQGLL +K PIH+++ +G VAVDTY WLHKGA++C+ +L KG PT R++ +CM
Sbjct: 1 MGIQGLLQFIKEASEPIHVRKYKGQVVAVDTYCWLHKGAIACAEKLAKGEPTDRYVGFCM 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
VN+L +G+KPIL+FDG LP K E E R R+ NL + + EG S + E +
Sbjct: 61 KFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECFT 120
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
++++I+ ++AH++I+ + Q V +VAPYEADAQ+ +L + V+A+ITEDSDL+ FGC
Sbjct: 121 RSINITHAMAHKVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFGCK 180
Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAH 240
++I KMD+FG G+E + L + L FT++ MCILSGCDYL SL G+GL +A
Sbjct: 181 KVILKMDQFGNGLEIDQARLGMCRQLG-DVFTEEKFRYMCILSGCDYLSSLRGIGLAKAC 239
Query: 241 ALISKFKSYD--KVIK---HLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLS 295
++ + D KVIK H ++VP Y F +A TF +Q V+DP ++ L+
Sbjct: 240 KVLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIRANNTFLYQLVFDPIKRKLIPLN 299
Query: 296 CISDNIGNDL---------DFLAKGIAIGDLDPFTQLPFQEVSD 330
D++ + D +A IA+G+ D T F+++ D
Sbjct: 300 AYEDDVDPETLSYAGQYVDDSIALQIALGNKDINT---FEQIDD 340
>pdb|3QE9|Y Chain Y, Crystal Structure Of Human Exonuclease 1 Exo1 (D173a) In
Complex With Dna (Complex I)
pdb|3QE9|Z Chain Z, Crystal Structure Of Human Exonuclease 1 Exo1 (D173a) In
Complex With Dna (Complex I)
Length = 352
Score = 245 bits (625), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 140/344 (40%), Positives = 209/344 (60%), Gaps = 18/344 (5%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGIQGLL +K PIH+++ +G VAVDTY WLHKGA++C+ +L KG PT R++ +CM
Sbjct: 1 MGIQGLLQFIKEASEPIHVRKYKGQVVAVDTYCWLHKGAIACAEKLAKGEPTDRYVGFCM 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
VN+L +G+KPIL+FDG LP K E E R R+ NL + + EG S + E +
Sbjct: 61 KFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECFT 120
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
++++I+ ++AH++I+ + Q V +VAPYEADAQ+ +L + V+A+ITEDS L+ FGC
Sbjct: 121 RSINITHAMAHKVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSALLAFGCK 180
Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAH 240
++I KMD+FG G+E + L + L FT++ MCILSGCDYL SL G+GL +A
Sbjct: 181 KVILKMDQFGNGLEIDQARLGMCRQLG-DVFTEEKFRYMCILSGCDYLSSLRGIGLAKAC 239
Query: 241 ALISKFKSYD--KVIK---HLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLS 295
++ + D KVIK H ++VP Y F +A TF +Q V+DP ++ L+
Sbjct: 240 KVLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIRANNTFLYQLVFDPIKRKLIPLN 299
Query: 296 CISDNIGNDL---------DFLAKGIAIGDLDPFTQLPFQEVSD 330
D++ + D +A IA+G+ D T F+++ D
Sbjct: 300 AYEDDVDPETLSYAGQYVDDSIALQIALGNKDINT---FEQIDD 340
>pdb|1UL1|X Chain X, Crystal Structure Of The Human Fen1-Pcna Complex
pdb|1UL1|Y Chain Y, Crystal Structure Of The Human Fen1-Pcna Complex
pdb|1UL1|Z Chain Z, Crystal Structure Of The Human Fen1-Pcna Complex
Length = 379
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 140/302 (46%), Gaps = 19/302 (6%)
Query: 2 GIQGLLPLLKSIMIPIHIKELE-----GCCVAVDT----YSWL---HKGALSCSRELCKG 49
GIQGL L+ + P I+E + G VA+D Y +L +G E +
Sbjct: 1 GIQGLAKLIADVA-PSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGE- 58
Query: 50 LPTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESE 109
T+ H+ +R + G+KP+ +FDG +K + KR+ R E + + ++
Sbjct: 59 --TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAA 116
Query: 110 GNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVIT 169
G +F ++ V ++ E +L + Y+ AP EA+A L + +V A T
Sbjct: 117 GAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAAT 176
Query: 170 EDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQ 229
ED D + FG S ++ + + + ++ L G ++ +++CIL G DY +
Sbjct: 177 EDMDCLTFG-SPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCE 235
Query: 230 SLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTE 289
S+ G+G KRA LI K KS +++++ L + VP + +A F V DP++
Sbjct: 236 SIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHK--EAHQLFLEPEVLDPESV 293
Query: 290 DI 291
++
Sbjct: 294 EL 295
>pdb|3Q8K|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (Wt) In
Complex With Product 5'-Flap Dna, Sm3+, And K+
pdb|3Q8L|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (Wt) In
Complex With Substrate 5'-Flap Dna, Sm3+, And K+
Length = 341
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 140/302 (46%), Gaps = 19/302 (6%)
Query: 2 GIQGLLPLLKSIMIPIHIKELE-----GCCVAVDT----YSWL---HKGALSCSRELCKG 49
GIQGL L+ + P I+E + G VA+D Y +L +G E +
Sbjct: 1 GIQGLAKLIADVA-PSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGE- 58
Query: 50 LPTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESE 109
T+ H+ +R + G+KP+ +FDG +K + KR+ R E + + ++
Sbjct: 59 --TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAA 116
Query: 110 GNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVIT 169
G +F ++ V ++ E +L + Y+ AP EA+A L + +V A T
Sbjct: 117 GAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAAT 176
Query: 170 EDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQ 229
ED D + FG S ++ + + + ++ L G ++ +++CIL G DY +
Sbjct: 177 EDMDCLTFG-SPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCE 235
Query: 230 SLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTE 289
S+ G+G KRA LI K KS +++++ L + VP + +A F V DP++
Sbjct: 236 SIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHK--EAHQLFLEPEVLDPESV 293
Query: 290 DI 291
++
Sbjct: 294 EL 295
>pdb|2IZO|A Chain A, Structure Of An Archaeal Pcna1-Pcna2-Fen1 Complex
Length = 346
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 133/274 (48%), Gaps = 25/274 (9%)
Query: 7 LPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLP-------TSRHIDYC 59
+ L+K + + EL+G V++D Y+ L++ L+ R+ G P + H+
Sbjct: 1 MDLVKDVKRELSFSELKGKRVSIDGYNALYQ-FLAAIRQ-PDGTPLMDSQGRVTSHLSGL 58
Query: 60 MHR-VNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIE-CESEGNSSASYE 117
+R +N+L GV PI +FDG P + +E +R R KE R +E +SEG +
Sbjct: 59 FYRTINILEE-GVIPIYVFDGK-PPEQKSEELERRRKAKEEAERKLERAKSEGKIEELRK 116
Query: 118 FYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPF 177
+ Q + +S + E ++L+ + + AP E +A+ +L A ++D D I F
Sbjct: 117 YSQAILRLSNIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDYDAILF 176
Query: 178 GCSRIIFKMDKFGQG--------VEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDY-L 228
G R++ + G+ VE + +++ L G T++ L+++ IL G DY
Sbjct: 177 GAKRLVRNLTITGKRKLPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIGTDYNP 236
Query: 229 QSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVS 262
+ G+G +RA +I K Y K+ K ++Y +S
Sbjct: 237 DGIRGIGPERALKII---KKYGKIEKAMEYGEIS 267
>pdb|3Q8M|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (D181a)
In Complex With Substrate 5'-Flap Dna And K+
pdb|3Q8M|B Chain B, Crystal Structure Of Human Flap Endonuclease Fen1 (D181a)
In Complex With Substrate 5'-Flap Dna And K+
Length = 341
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 139/302 (46%), Gaps = 19/302 (6%)
Query: 2 GIQGLLPLLKSIMIPIHIKELE-----GCCVAVDT----YSWL---HKGALSCSRELCKG 49
GIQGL L+ + P I+E + G VA+D Y +L +G E +
Sbjct: 1 GIQGLAKLIADVA-PSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGE- 58
Query: 50 LPTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESE 109
T+ H+ +R + G+KP+ +FDG +K + KR+ R E + + ++
Sbjct: 59 --TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAA 116
Query: 110 GNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVIT 169
G +F ++ V ++ E +L + Y+ AP EA+A L + +V A T
Sbjct: 117 GAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAAT 176
Query: 170 EDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQ 229
ED + FG S ++ + + + ++ L G ++ +++CIL G DY +
Sbjct: 177 EDMACLTFG-SPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCE 235
Query: 230 SLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTE 289
S+ G+G KRA LI K KS +++++ L + VP + +A F V DP++
Sbjct: 236 SIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHK--EAHQLFLEPEVLDPESV 293
Query: 290 DI 291
++
Sbjct: 294 EL 295
>pdb|1RXV|A Chain A, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna
pdb|1RXV|B Chain B, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna
pdb|1RXW|A Chain A, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna
Length = 336
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 123/262 (46%), Gaps = 21/262 (8%)
Query: 17 IHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLP-------TSRHIDYCMHRVNLLRHY 69
+ ++ G +AVD ++ L++ +S R+ G P + H+ ++RV+ +
Sbjct: 14 VELEYFSGKKIAVDAFNTLYQ-FISIIRQ-PDGTPLKDSQGRITSHLSGILYRVSNMVEV 71
Query: 70 GVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQKAVDISPSI 129
G++P+ +FDG K + +R + R E I G+ A ++ Q A + I
Sbjct: 72 GIRPVFVFDGEPPEFKKAEIEERKKRRAEAEEMWIAALQAGDKDAK-KYAQAAGRVDEYI 130
Query: 130 AHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSRIIFKMDKF 189
+L + ++ AP E +AQ ++A VE ++D D + FG R+ +
Sbjct: 131 VDSAKTLLSYMGIPFVDAPSEGEAQAAYMAAKGDVEYTGSQDYDSLLFGSPRLARNLAIT 190
Query: 190 GQG--------VEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAHA 241
G+ V+ + ++ +L G T++ L+++ IL G DY + + G+G+K+A
Sbjct: 191 GKRKLPGKNVYVDVKPEIIILESNLKRLGLTREQLIDIAILVGTDYNEGVKGVGVKKA-- 248
Query: 242 LISKFKSYDKVIKHLKYSTVSV 263
++ K+Y + + LK V++
Sbjct: 249 -LNYIKTYGDIFRALKALKVNI 269
>pdb|1MC8|A Chain A, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
Pyrococcus Horikoshii
pdb|1MC8|B Chain B, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
Pyrococcus Horikoshii
Length = 343
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/320 (25%), Positives = 143/320 (44%), Gaps = 25/320 (7%)
Query: 17 IHIKELEGCCVAVDTYSWLHKGALSCSREL-------CKGLPTSRHIDYCMHRVNLLRHY 69
I ++ L G +A+D + +++ LS R+ KG TS H+ +R L
Sbjct: 14 IDLENLYGKKIAIDALNAIYQ-FLSTIRQEDGTPLMDSKGRITS-HLSGLFYRTINLMEA 71
Query: 70 GVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQKAVDISPSI 129
G+KP +FDG K ++ KR +R+E + E ++GN + ++ Q+A ++ +
Sbjct: 72 GIKPAYVFDGKPPEFKRKELEKRREAREEAELKWKEALAKGNLEEARKYAQRATKVNEML 131
Query: 130 AHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSRIIFKMDKF 189
+ ++L+ + I AP E +AQ ++A V A ++D D + FG R+I +
Sbjct: 132 IEDAKKLLQLMGIPIIQAPSEGEAQAAYMASKGDVYASASQDYDSLLFGAPRLIRNLTIT 191
Query: 190 GQG--------VEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDY-LQSLPGMGLKRAH 240
G+ VE + ++ ++ L T++ L+E+ IL G DY + G+G K+A
Sbjct: 192 GKRKMPGKDVYVEIKPELVVLDEVLKELKITREKLIELAILVGTDYNPGGVKGIGPKKAL 251
Query: 241 ALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLSCISDN 300
++ S D + K + S V + E V +P E I+ C N
Sbjct: 252 EIVR--YSRDPLAKFQRQSDVDLYAIKEFFLNPPVTNEYSLSWKEPDEEGILKFLCDEHN 309
Query: 301 -----IGNDLDFLAKGIAIG 315
+ N ++ L K I G
Sbjct: 310 FSEERVKNGIERLKKAIKAG 329
>pdb|1B43|A Chain A, Fen-1 From P. Furiosus
pdb|1B43|B Chain B, Fen-1 From P. Furiosus
Length = 340
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/321 (25%), Positives = 148/321 (46%), Gaps = 27/321 (8%)
Query: 17 IHIKELEGCCVAVDTYSWLHKGALSCSREL-------CKGLPTSRHIDYCMHRVNLLRHY 69
I ++ L G +A+D + +++ LS R+ KG TS H+ +R L
Sbjct: 14 IELENLYGKKIAIDALNAIYQ-FLSTIRQKDGTPLMDSKGRITS-HLSGLFYRTINLMEA 71
Query: 70 GVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQKAVDISPSI 129
G+KP+ +FDG K ++ KR +R+E + E +G + ++ Q+A ++ +
Sbjct: 72 GIKPVYVFDGEPPEFKKKELEKRREAREEAEEKWREALEKGEIEEARKYAQRATRVNEML 131
Query: 130 AHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSRIIFKMDKF 189
+ ++L+ + + AP E +AQ ++A V A ++D D + FG R++ +
Sbjct: 132 IEDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASASQDYDSLLFGAPRLVRNLTIT 191
Query: 190 GQG--------VEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDY-LQSLPGMGLKRAH 240
G+ VE + ++ + L T++ L+E+ IL G DY + G+GLK+A
Sbjct: 192 GKRKLPGKNVYVEIKPELIILEEVLKELKLTREKLIELAILVGTDYNPGGIKGIGLKKAL 251
Query: 241 ALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVY-DPKTEDIVHLSC--- 296
++ S D + K K S V + +E F +T + V+ DP E I+ C
Sbjct: 252 EIVR--HSKDPLAKFQKQSDVDLYAI-KEFFLNPPVTDNYNLVWRDPDEEGILKFLCDEH 308
Query: 297 --ISDNIGNDLDFLAKGIAIG 315
+ + N L+ L K I G
Sbjct: 309 DFSEERVKNGLERLKKAIKSG 329
>pdb|3ORY|A Chain A, Crystal Structure Of Flap Endonuclease 1 From
Hyperthermophilic Archaeon Desulfurococcus Amylolyticus
Length = 363
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 124/265 (46%), Gaps = 26/265 (9%)
Query: 19 IKELEGCCVAVDTYSWLHKGALSCSRELCKGLP-------TSRHIDYCMHRVNLLRHYGV 71
++ L G + +D Y+ L++ L+ R+ G P + H+ +R + G+
Sbjct: 30 LRILHGKIIVIDGYNALYQ-FLAAIRQ-PDGTPLMDNNGRITSHLSGLFYRTINIVEAGI 87
Query: 72 KPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQKAVDISPSIAH 131
KP+ +FDG +K +E +R ++ KE A+ E E S E ++ +S +
Sbjct: 88 KPVYVFDGKPPELK-AREIERRKAVKEEAAKKYE---EAVQSGDLELARRYAMMSAKLTE 143
Query: 132 ELIQ----VLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSRII---- 183
E+++ +L + ++ AP E +AQ ++ A ++D D + FG +++
Sbjct: 144 EMVRDAKSLLDAMGIPWVQAPAEGEAQAAYIVKKGDAYASASQDYDSLLFGSPKLVRNLT 203
Query: 184 ----FKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDY-LQSLPGMGLKR 238
K+ + + VE + +++ +K L G T + L+++ IL G DY G+G K+
Sbjct: 204 ISGRRKLPRKNEYVEVKPELIELDKLLVQLGITLENLIDIGILLGTDYNPDGFEGIGPKK 263
Query: 239 AHALISKFKSYDKVIKHLKYSTVSV 263
A L+ + +K+ K + S + V
Sbjct: 264 ALQLVKAYGGIEKIPKPILKSPIEV 288
>pdb|1A76|A Chain A, Flap Endonuclease-1 From Methanococcus Jannaschii
pdb|1A77|A Chain A, Flap Endonuclease-1 From Methanococcus Jannaschii
Length = 326
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 129/269 (47%), Gaps = 23/269 (8%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLP--------T 52
MG+Q + K+I I ++L+G VA+D + L++ S L G P T
Sbjct: 1 MGVQFGDFIPKNI---ISFEDLKGKKVAIDGMNALYQ--FLTSIRLRDGSPLRNRKGEIT 55
Query: 53 SRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLA--RAIECESEG 110
S + ++LL + + PI +FDG P K++++ ++ R + A + E +
Sbjct: 56 SAYNGVFYKTIHLLEN-DITPIWVFDGE--PPKLKEKTRKVRREMKEKAELKMKEAIKKE 112
Query: 111 NSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITE 170
+ + ++ ++ ++P + +L + Y+ AP E +AQ +++A V AV+++
Sbjct: 113 DFEEAAKYAKRVSYLTPKMVENCKYLLSLMGIPYVEAPSEGEAQASYMAKKGDVWAVVSQ 172
Query: 171 DSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDY-LQ 229
D D + +G R++ + + E +++ N+ L + L+++ I G DY
Sbjct: 173 DYDALLYGAPRVVRNLTTTKEMPE----LIELNEVLEDLRISLDDLIDIAIFMGTDYNPG 228
Query: 230 SLPGMGLKRAHALISKFKSYDKVIKHLKY 258
+ G+G KRA+ L+ + D + K ++Y
Sbjct: 229 GVKGIGFKRAYELVRSGVAKDVLKKEVEY 257
>pdb|3ZLI|A Chain A, Crystal Structure Of Jmjc Domain Of Human Histone
Demethylase Uty
pdb|3ZLI|B Chain B, Crystal Structure Of Jmjc Domain Of Human Histone
Demethylase Uty
Length = 478
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 435 SPSREMENERNAEHTSLPQFCRSIRNPCPALR 466
+PS +EN+R+A L QFC + +NP +R
Sbjct: 11 TPSIYLENKRDAFFPPLHQFCTNPKNPVTVIR 42
>pdb|3K4N|A Chain A, Pyranose 2-Oxidase F454aS455AY456A MUTANT
pdb|3K4N|B Chain B, Pyranose 2-Oxidase F454aS455AY456A MUTANT
Length = 623
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 8/136 (5%)
Query: 224 GCDYLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRV 283
GC Y + L G G K A I + S K+ H K +TV Y+++ K V Q Q +
Sbjct: 58 GCTYARELVGAGYKVAMFDIGEIDSGLKIGAH-KKNTVE----YQKNIDKFVNVIQGQLM 112
Query: 284 YDPKTEDIVHLSCISDNIGNDLDFLAKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHLK 343
+ + + +S F + + + DP L Q V + +V G ++H
Sbjct: 113 SVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAV---TRVVGGMSTHWT 169
Query: 344 NFKPESERKKLDLPVQ 359
P +R++ L V+
Sbjct: 170 CATPRFDREQRPLLVK 185
>pdb|3K4K|A Chain A, Pyranose 2-Oxidase F454n Mutant
pdb|3K4L|A Chain A, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
pdb|3K4L|B Chain B, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
Length = 623
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 8/136 (5%)
Query: 224 GCDYLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRV 283
GC Y + L G G K A I + S K+ H K +TV Y+++ K V Q Q +
Sbjct: 58 GCTYARELVGAGYKVAMFDIGEIDSGLKIGAH-KKNTVE----YQKNIDKFVNVIQGQLM 112
Query: 284 YDPKTEDIVHLSCISDNIGNDLDFLAKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHLK 343
+ + + +S F + + + DP L Q V + +V G ++H
Sbjct: 113 SVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAV---TRVVGGMSTHWT 169
Query: 344 NFKPESERKKLDLPVQ 359
P +R++ L V+
Sbjct: 170 CATPRFDREQRPLLVK 185
>pdb|3K4J|A Chain A, Pyranose 2-Oxidase H450q Mutant
Length = 623
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 8/136 (5%)
Query: 224 GCDYLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRV 283
GC Y + L G G K A I + S K+ H K +TV Y+++ K V Q Q +
Sbjct: 58 GCTYARELVGAGYKVAMFDIGEIDSGLKIGAH-KKNTVE----YQKNIDKFVNVIQGQLM 112
Query: 284 YDPKTEDIVHLSCISDNIGNDLDFLAKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHLK 343
+ + + +S F + + + DP L Q V + +V G ++H
Sbjct: 113 SVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAV---TRVVGGMSTHWT 169
Query: 344 NFKPESERKKLDLPVQ 359
P +R++ L V+
Sbjct: 170 CATPRFDREQRPLLVK 185
>pdb|3BG7|A Chain A, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|B Chain B, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|C Chain C, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|D Chain D, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|E Chain E, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|F Chain F, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|G Chain G, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|H Chain H, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
Length = 623
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 8/136 (5%)
Query: 224 GCDYLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRV 283
GC Y + L G G K A I + S K+ H K +TV Y+++ K V Q Q +
Sbjct: 58 GCTYARELVGAGYKVAMFDIGEIDSGLKIGAH-KKNTVE----YQKNIDKFVNVIQGQLM 112
Query: 284 YDPKTEDIVHLSCISDNIGNDLDFLAKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHLK 343
+ + + +S F + + + DP L Q V + +V G ++H
Sbjct: 113 SVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAV---TRVVGGMSTHWT 169
Query: 344 NFKPESERKKLDLPVQ 359
P +R++ L V+
Sbjct: 170 CATPRFDREQRPLLVK 185
>pdb|2F5V|A Chain A, Reaction Geometry And Thermostability Mutant Of Pyranose
2-Oxidase From The White-Rot Fungus Peniophora Sp
Length = 595
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 8/136 (5%)
Query: 224 GCDYLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRV 283
GC Y + L G G K A I + S K+ H K +TV Y+++ K V Q Q +
Sbjct: 30 GCTYARELVGAGYKVAMFDIGEIDSGLKIGAH-KKNTVE----YQKNIDKFVNVIQGQLM 84
Query: 284 YDPKTEDIVHLSCISDNIGNDLDFLAKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHLK 343
+ + + +S F + + + DP L Q V + +V G ++H
Sbjct: 85 SVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAV---TRVVGGMSTHWT 141
Query: 344 NFKPESERKKLDLPVQ 359
P +R++ L V+
Sbjct: 142 CATPRFDREQRPLLVK 157
>pdb|3K4M|A Chain A, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|B Chain B, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|C Chain C, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|D Chain D, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|E Chain E, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|F Chain F, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|G Chain G, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|H Chain H, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
Length = 623
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 8/136 (5%)
Query: 224 GCDYLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRV 283
GC Y + L G G K A I + S K+ H K +TV Y+++ K V Q Q +
Sbjct: 58 GCTYARELVGAGYKVAMFDIGEIDSGLKIGAH-KKNTVE----YQKNIDKFVNVIQGQLM 112
Query: 284 YDPKTEDIVHLSCISDNIGNDLDFLAKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHLK 343
+ + + +S F + + + DP L Q V + +V G ++H
Sbjct: 113 SVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAV---TRVVGGMSTHWT 169
Query: 344 NFKPESERKKLDLPVQ 359
P +R++ L V+
Sbjct: 170 CATPRFDREQRPLLVK 185
>pdb|2F6C|A Chain A, Reaction Geometry And Thermostability Of Pyranose
2-Oxidase From The White-Rot Fungus Peniophora Sp.,
Thermostability Mutant E542k
Length = 595
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 8/136 (5%)
Query: 224 GCDYLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRV 283
GC Y + L G G K A I + S K+ H K +TV Y+++ K V Q Q +
Sbjct: 30 GCTYARELVGAGYKVAMFDIGEIDSGLKIGAH-KKNTVE----YQKNIDKFVNVIQGQLM 84
Query: 284 YDPKTEDIVHLSCISDNIGNDLDFLAKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHLK 343
+ + + +S F + + + DP L Q V + +V G ++H
Sbjct: 85 SVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAV---TRVVGGMSTHWT 141
Query: 344 NFKPESERKKLDLPVQ 359
P +R++ L V+
Sbjct: 142 CATPRFDREQRPLLVK 157
>pdb|3LSH|A Chain A, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|B Chain B, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|C Chain C, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|D Chain D, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSI|A Chain A, Pyranose 2-Oxidase T169a, Tetragonal
pdb|3LSI|B Chain B, Pyranose 2-Oxidase T169a, Tetragonal
Length = 623
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 8/136 (5%)
Query: 224 GCDYLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRV 283
GC Y + L G G K A I + S K+ H K +TV Y+++ K V Q Q +
Sbjct: 58 GCTYARELVGAGYKVAMFDIGEIDSGLKIGAH-KKNTVE----YQKNIDKFVNVIQGQLM 112
Query: 284 YDPKTEDIVHLSCISDNIGNDLDFLAKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHLK 343
+ + + +S F + + + DP L Q V + +V G ++H
Sbjct: 113 SVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAV---TRVVGGMSTHWA 169
Query: 344 NFKPESERKKLDLPVQ 359
P +R++ L V+
Sbjct: 170 CATPRFDREQRPLLVK 185
>pdb|2IGM|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
Length = 623
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 8/136 (5%)
Query: 224 GCDYLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRV 283
GC Y + L G G K A I + S K+ H K +TV Y+++ K V Q Q +
Sbjct: 58 GCTYARELVGAGYKVAMFDIGEIDSGLKIGAH-KKNTVE----YQKNIDKFVNVIQGQLM 112
Query: 284 YDPKTEDIVHLSCISDNIGNDLDFLAKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHLK 343
+ + + +S F + + + DP L Q V + +V G ++H
Sbjct: 113 SVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAV---TRVVGGMSTHWT 169
Query: 344 NFKPESERKKLDLPVQ 359
P +R++ L V+
Sbjct: 170 CATPRFDREQRPLLVK 185
>pdb|3K4B|A Chain A, Pyranose 2-Oxidase T169s Mutant
pdb|3LSK|A Chain A, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|B Chain B, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|C Chain C, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|D Chain D, Pyranose 2-Oxidase T169s Acetate Complex
Length = 623
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 8/136 (5%)
Query: 224 GCDYLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRV 283
GC Y + L G G K A I + S K+ H K +TV Y+++ K V Q Q +
Sbjct: 58 GCTYARELVGAGYKVAMFDIGEIDSGLKIGAH-KKNTVE----YQKNIDKFVNVIQGQLM 112
Query: 284 YDPKTEDIVHLSCISDNIGNDLDFLAKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHLK 343
+ + + +S F + + + DP L Q V + +V G ++H
Sbjct: 113 SVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAV---TRVVGGMSTHWS 169
Query: 344 NFKPESERKKLDLPVQ 359
P +R++ L V+
Sbjct: 170 CATPRFDREQRPLLVK 185
>pdb|3BG6|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|B Chain B, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|C Chain C, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|D Chain D, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|E Chain E, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|F Chain F, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|G Chain G, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|H Chain H, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
Length = 623
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 8/136 (5%)
Query: 224 GCDYLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRV 283
GC Y + L G G K A I + S K+ H K +TV Y+++ K V Q Q +
Sbjct: 58 GCTYARELVGAGYKVAMFDIGEIDSGLKIGAH-KKNTVE----YQKNIDKFVNVIQGQLM 112
Query: 284 YDPKTEDIVHLSCISDNIGNDLDFLAKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHLK 343
+ + + +S F + + + DP L Q V + +V G ++H
Sbjct: 113 SVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAV---TRVVGGMSTHWT 169
Query: 344 NFKPESERKKLDLPVQ 359
P +R++ L V+
Sbjct: 170 CATPRFDREQRPLLVK 185
>pdb|1TT0|A Chain A, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|B Chain B, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|C Chain C, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|D Chain D, Crystal Structure Of Pyranose 2-Oxidase
pdb|2IGK|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase
Length = 623
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 8/136 (5%)
Query: 224 GCDYLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRV 283
GC Y + L G G K A I + S K+ H K +TV Y+++ K V Q Q +
Sbjct: 58 GCTYARELVGAGYKVAMFDIGEIDSGLKIGAH-KKNTVE----YQKNIDKFVNVIQGQLM 112
Query: 284 YDPKTEDIVHLSCISDNIGNDLDFLAKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHLK 343
+ + + +S F + + + DP L Q V + +V G ++H
Sbjct: 113 SVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAV---TRVVGGMSTHWT 169
Query: 344 NFKPESERKKLDLPVQ 359
P +R++ L V+
Sbjct: 170 CATPRFDREQRPLLVK 185
>pdb|3BLY|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542kL537W
Length = 623
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 8/136 (5%)
Query: 224 GCDYLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRV 283
GC Y + L G G K A I + S K+ H K +TV Y+++ K V Q Q +
Sbjct: 58 GCTYARELVGAGYKVAMFDIGEIDSGLKIGAH-KKNTVE----YQKNIDKFVNVIQGQLM 112
Query: 284 YDPKTEDIVHLSCISDNIGNDLDFLAKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHLK 343
+ + + +S F + + + DP L Q V + +V G ++H
Sbjct: 113 SVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAV---TRVVGGMSTHWT 169
Query: 344 NFKPESERKKLDLPVQ 359
P +R++ L V+
Sbjct: 170 CATPRFDREQRPLLVK 185
>pdb|3FDY|A Chain A, Pyranose 2-Oxidase Thermostable Triple Mutant,
T169gE542KV546C
Length = 623
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 8/136 (5%)
Query: 224 GCDYLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRV 283
GC Y + L G G K A I + S K+ H K +TV Y+++ K V Q Q +
Sbjct: 58 GCTYARELVGAGYKVAMFDIGEIDSGLKIGAH-KKNTVE----YQKNIDKFVNVIQGQLM 112
Query: 284 YDPKTEDIVHLSCISDNIGNDLDFLAKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHLK 343
+ + + +S F + + + DP L Q V + +V G ++H
Sbjct: 113 SVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAV---TRVVGGMSTHWG 169
Query: 344 NFKPESERKKLDLPVQ 359
P +R++ L V+
Sbjct: 170 CATPRFDREQRPLLVK 185
>pdb|2VHU|A Chain A, P4 Protein From Bacteriophage Phi12 K241c Mutant In
Complex With Adp And Mgcl
pdb|2VHU|B Chain B, P4 Protein From Bacteriophage Phi12 K241c Mutant In
Complex With Adp And Mgcl
pdb|2VHU|C Chain C, P4 Protein From Bacteriophage Phi12 K241c Mutant In
Complex With Adp And Mgcl
Length = 331
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 6/105 (5%)
Query: 555 HTDKMGSKLMRTNASLHNNGYSDPNLDKTIATETDEA-KFGANISHLGSYSEIAEKSMER 613
HTD GS T+ L + P L I E+ +A F N + +Y E + K+ +
Sbjct: 22 HTDAPGSWFDHTSGVLESVEDGTPVL--AIGVESGDAIVFDKNAQRIVAYKEKSVKAEDG 79
Query: 614 FVSVISKYRCTSGSRASGLRAPLKDVRNTCTVRSPVAVDFSQFEY 658
VSV+ + +G G R L D+ SPV +F Y
Sbjct: 80 SVSVV---QVENGFMKQGHRGWLVDLTGELVGCSPVVAEFGGHRY 121
>pdb|1IRU|E Chain E, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|S Chain S, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 241
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 101 ARAIECESEGNSSASYEFYQKAVDISPSIAHELIQVLKQ 139
ARAI SEG S+ E Y K++ + +I LI +LKQ
Sbjct: 167 ARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLI-ILKQ 204
>pdb|2VHT|A Chain A, P4 Protein From Bacteriophage Phi12 R279a Mutant In
Complex With Atp
pdb|2VHT|B Chain B, P4 Protein From Bacteriophage Phi12 R279a Mutant In
Complex With Atp
pdb|2VHT|C Chain C, P4 Protein From Bacteriophage Phi12 R279a Mutant In
Complex With Atp
Length = 331
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 6/105 (5%)
Query: 555 HTDKMGSKLMRTNASLHNNGYSDPNLDKTIATETDEA-KFGANISHLGSYSEIAEKSMER 613
HTD GS T+ L + P L I E+ +A F N + +Y E + K+ +
Sbjct: 22 HTDAPGSWFDHTSGVLESVEDGTPVL--AIGVESGDAIVFDKNAQRIVAYKEKSVKAEDG 79
Query: 614 FVSVISKYRCTSGSRASGLRAPLKDVRNTCTVRSPVAVDFSQFEY 658
VSV+ + +G G R L D+ SPV +F Y
Sbjct: 80 SVSVV---QVENGFMKQGHRGWLVDLTGELVGCSPVVAEFGGHRY 121
>pdb|2VHC|A Chain A, P4 Protein From Bacteriophage Phi12 N234g Mutant In
Complex With Ampcpp And Mn
pdb|2VHC|B Chain B, P4 Protein From Bacteriophage Phi12 N234g Mutant In
Complex With Ampcpp And Mn
pdb|2VHC|C Chain C, P4 Protein From Bacteriophage Phi12 N234g Mutant In
Complex With Ampcpp And Mn
Length = 331
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 6/105 (5%)
Query: 555 HTDKMGSKLMRTNASLHNNGYSDPNLDKTIATETDEA-KFGANISHLGSYSEIAEKSMER 613
HTD GS T+ L + P L I E+ +A F N + +Y E + K+ +
Sbjct: 22 HTDAPGSWFDHTSGVLESVEDGTPVL--AIGVESGDAIVFDKNAQRIVAYKEKSVKAEDG 79
Query: 614 FVSVISKYRCTSGSRASGLRAPLKDVRNTCTVRSPVAVDFSQFEY 658
VSV+ + +G G R L D+ SPV +F Y
Sbjct: 80 SVSVV---QVENGFMKQGHRGWLVDLTGELVGCSPVVAEFGGHRY 121
>pdb|2VHJ|A Chain A, P4 Protein From Bacteriophage Phi12 S252a Mutant In
Complex With Adp
pdb|2VHJ|B Chain B, P4 Protein From Bacteriophage Phi12 S252a Mutant In
Complex With Adp
pdb|2VHJ|C Chain C, P4 Protein From Bacteriophage Phi12 S252a Mutant In
Complex With Adp
pdb|2VHQ|A Chain A, P4 Protein From Bacteriophage Phi12 S252a Mutant In
Complex With Atp And Mg
pdb|2VHQ|B Chain B, P4 Protein From Bacteriophage Phi12 S252a Mutant In
Complex With Atp And Mg
pdb|2VHQ|C Chain C, P4 Protein From Bacteriophage Phi12 S252a Mutant In
Complex With Atp And Mg
Length = 331
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 6/105 (5%)
Query: 555 HTDKMGSKLMRTNASLHNNGYSDPNLDKTIATETDEA-KFGANISHLGSYSEIAEKSMER 613
HTD GS T+ L + P L I E+ +A F N + +Y E + K+ +
Sbjct: 22 HTDAPGSWFDHTSGVLESVEDGTPVL--AIGVESGDAIVFDKNAQRIVAYKEKSVKAEDG 79
Query: 614 FVSVISKYRCTSGSRASGLRAPLKDVRNTCTVRSPVAVDFSQFEY 658
VSV+ + +G G R L D+ SPV +F Y
Sbjct: 80 SVSVV---QVENGFMKQGHRGWLVDLTGELVGCSPVVAEFGGHRY 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,478,161
Number of Sequences: 62578
Number of extensions: 804704
Number of successful extensions: 1838
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1809
Number of HSP's gapped (non-prelim): 36
length of query: 672
length of database: 14,973,337
effective HSP length: 105
effective length of query: 567
effective length of database: 8,402,647
effective search space: 4764300849
effective search space used: 4764300849
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)