BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005869
(672 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L6Z7|EXO1_ARATH Exonuclease 1 OS=Arabidopsis thaliana GN=EXO1 PE=2 SV=2
Length = 735
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/745 (54%), Positives = 478/745 (64%), Gaps = 83/745 (11%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGIQGLLPLLKSIM+PIHIKELEGC VAVDTYSWLHKGALSCSRELCKGLPT RHI YCM
Sbjct: 1 MGIQGLLPLLKSIMVPIHIKELEGCIVAVDTYSWLHKGALSCSRELCKGLPTKRHIQYCM 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
HRVNLLRH+GVKPI++FDGG LPMK+EQENKRARSRKENLARA+E E+ GNSSA+YE Y
Sbjct: 61 HRVNLLRHHGVKPIMVFDGGPLPMKLEQENKRARSRKENLARALEHEANGNSSAAYECYS 120
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
KAVDISPSIAHELIQVL+Q+NV Y+VAPYEADAQM FLA++KQV+A+ITEDSDLIPFGC
Sbjct: 121 KAVDISPSIAHELIQVLRQENVDYVVAPYEADAQMAFLAITKQVDAIITEDSDLIPFGCL 180
Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAH 240
RIIFKMDKFG GVEFQ S L KNKDLS GF+ QMLLEMCILSGCDYLQSLPGMGLKRAH
Sbjct: 181 RIIFKMDKFGHGVEFQASKLPKNKDLSLSGFSSQMLLEMCILSGCDYLQSLPGMGLKRAH 240
Query: 241 ALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLSCISDN 300
ALI+KFKSYD+VIKHLKYSTVSVPP YEESF +A+LTF+HQRVYDP EDI+HL ISDN
Sbjct: 241 ALITKFKSYDRVIKHLKYSTVSVPPLYEESFKRALLTFKHQRVYDPNAEDIIHLCDISDN 300
Query: 301 IGNDLDF--------LAKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHLKNFKPESERK 352
+G D DF +AKGIA+G LDPFTQLPFQ S L V S K+FKPE+ +K
Sbjct: 301 LGEDSDFVGPSMPQDIAKGIALGQLDPFTQLPFQAESVTPKLAVDDISRPKSFKPETVKK 360
Query: 353 KLDLPVQKNLLTK-----------KFTTPRISPNHFSPEETSSLSPGEHHTAEASCDISC 401
KLDLPVQKNLLTK KF PRISP +P + S P ++ + D+
Sbjct: 361 KLDLPVQKNLLTKYFCFASVEAKRKFKAPRISPMSLTPTDESPSIPDDN-----TPDLDA 415
Query: 402 QSSSRMELETVGNFPHNSSEKNCFASEVPEFSASPSREM--ENERNAEHT---------- 449
SS +T P S +N SEV E SP + N ++ H
Sbjct: 416 LSS-----QTTNESPVYSLGENPCVSEVAEKRDSPDDDAVERNHKDLHHKYCEREVDRPK 470
Query: 450 --SLPQFCRS-----------------IRNPCPALRKEHENKNCTDSVVGKGRTENRKVI 490
SL RS N C + + K + R E+ + I
Sbjct: 471 SDSLKVIVRSKYFKQKQEDKSLKQSIPCLNDCSVIGQRKAVKTVINMSSASKREESHRAI 530
Query: 491 VRSSYFLHKQVNKDDQENKQEKLVVENDAA--------IDMSENTGLQSAHFDYSYLKGT 542
S H ++ D ++ K+ N+ A I+ N Q+ + T
Sbjct: 531 ATSPCLHHDRIYNDHEDAKEASFSAMNEVAERTINTHKINHQINEEEQNPSVEIPSAFST 590
Query: 543 ---AIKRKTSLIDSVHTDKMGSKLMRTNASLHNNGY---------SDPNLDKTIATETDE 590
I + IDS H G + + ++ +LH +D L+ ETD+
Sbjct: 591 PENVIPLSSIAIDSCHGVATGKRKLDSDENLHKENLKSKHMRMDETDTALNAETPLETDD 650
Query: 591 A-KFGANISHLGSYSEIAEKSMERFVSVISKYRCT-SGSRASGLRAPLKDVRNTCTVRS- 647
KFG+NISH+G YSEIAEKS+ERFVS IS ++ + +GSRASGLRAPLKD+RNTC +
Sbjct: 651 VEKFGSNISHIGHYSEIAEKSVERFVSAISSFKYSGTGSRASGLRAPLKDIRNTCPSKGL 710
Query: 648 PVAVDFSQFEYVPKSRKSDLASRRL 672
+ D S+F Y +R SRR+
Sbjct: 711 SLKPDISKFGYASSNRHMVTKSRRM 735
>sp|Q60GC1|EXO1_ORYSJ Exonuclease 1 OS=Oryza sativa subsp. japonica GN=EXO1 PE=2 SV=1
Length = 836
Score = 587 bits (1514), Expect = e-167, Method: Compositional matrix adjust.
Identities = 352/715 (49%), Positives = 435/715 (60%), Gaps = 86/715 (12%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGIQGLLP LKSIM PI ++ L+G VAVDTYSWLHKGALSC LCKGLPT+RHI+YCM
Sbjct: 1 MGIQGLLPQLKSIMAPIGVEALKGQTVAVDTYSWLHKGALSCGDRLCKGLPTTRHIEYCM 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
HRVN+LRH+GVKPIL+FDGG LPMK +QE KR RSRKENL RA E ES GNS A++E YQ
Sbjct: 61 HRVNMLRHHGVKPILVFDGGHLPMKGDQETKRERSRKENLERAKEHESAGNSRAAFECYQ 120
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
KAVDI+P IA ELIQVLKQ+ V YIVAPYEADAQMTFL+V+K V+AVITEDSDLIPFGCS
Sbjct: 121 KAVDITPRIAFELIQVLKQEKVDYIVAPYEADAQMTFLSVNKLVDAVITEDSDLIPFGCS 180
Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAH 240
RIIFKMDKFGQGVEF + LQ+ ++L GFT QMLLEMCILSGCDYL SLPGMG+KRAH
Sbjct: 181 RIIFKMDKFGQGVEFHITRLQRCRELDLNGFTMQMLLEMCILSGCDYLPSLPGMGVKRAH 240
Query: 241 ALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLSCISDN 300
ALI K K ++KVIKHL+YS VSVPP YEE+F KA+ FQ QRVYDP TEDIVHLS I
Sbjct: 241 ALIQKLKGHEKVIKHLRYSAVSVPPQYEENFRKAIWAFQFQRVYDPVTEDIVHLSGIPHG 300
Query: 301 IGNDLDFL--------AKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHL--KNFKPESE 350
DLDFL AKGIA G++DP T+ PF+ +++S L + HL ++ P +
Sbjct: 301 SSEDLDFLGPWLPQTVAKGIAQGNIDPITKEPFEGKTESSALAFDK-VHLNRESSAPSNG 359
Query: 351 RKKLDLPVQKNLLT-----------KKFTTPRISPNHF-------SPEETSSLSP----- 387
+KKLDLPVQ+N+LT +KF P+++P SP S +P
Sbjct: 360 KKKLDLPVQRNVLTNYFCLASLEAKRKFRAPKVTPKQQVLNGSLPSPRIEDSGTPDLIED 419
Query: 388 --------------GEHHTAEASCDISCQSSSRMELETVG-NFPHNSSEKNCFASEVPEF 432
EH ++ D S ++S+ E V + P + S AS P+
Sbjct: 420 TSLPSNNIQVYQCSSEHFSSGTPLDDSINTASQCSSERVRCDIPRDDS-----ASVSPQC 474
Query: 433 S----ASPSREMENERNAEHTSLPQFCRSIRNPC--------PALRKEHENKNCTDSVVG 480
S + P+ + + E N + FC P P + + + T+
Sbjct: 475 SHDIGSDPAEDPDIEGNKVKVN---FCNRSTIPTGSFLEGTLPGISDPFLDSHNTEPSRA 531
Query: 481 KGR--------TENRKVIVRSSYFLHKQVNKDDQENKQEKLVVENDAAIDMSENTGLQSA 532
R + NR + VRSSYF K VNK N+ E + D TG +
Sbjct: 532 APRYAEKSNVVSANRNITVRSSYF--KTVNKRVCTNQGEDECHDEDNC-----ETGNYTL 584
Query: 533 HFDYSYLKGTAIKRKTSLIDSVHTDKMGSKLMRTNASLHNNGYSDPNLDKTIATETDEAK 592
D G +KR+ D M + + D + I T + E K
Sbjct: 585 PGDQQRSSGGILKRRKFSDPQNFEDGMFQPTSPHESPPVADKGCDSDSHDGINTNS-EGK 643
Query: 593 FGANISHLGSYSEIAEKSMERFVSVISKYRCTSGSRASGLRAPLKDVRNTCTVRS 647
FG N++H+ YS IAEKSM++F ++IS +R +GSRASGLRAPLKDV+NT VRS
Sbjct: 644 FGCNVAHVNKYSGIAEKSMDKFAALISSFR-YAGSRASGLRAPLKDVKNTLPVRS 697
>sp|Q54ED2|EXO1_DICDI Exonuclease 1 OS=Dictyostelium discoideum GN=exo1 PE=3 SV=1
Length = 1046
Score = 282 bits (721), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 141/288 (48%), Positives = 189/288 (65%), Gaps = 2/288 (0%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGI GLLP L + IH+K+ VA+D YSWLHKGA SCS+E+ G+PT +I+Y +
Sbjct: 1 MGISGLLPALSPVTKAIHVKDYANKRVAIDGYSWLHKGAYSCSQEIVLGIPTRNYINYFI 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
R+ +L Y V P++IFDGG LP K +E +R R R+E +A EGN S + +Q
Sbjct: 61 SRIKMLISYKVIPVVIFDGGPLPNKKLKEQERLRHREEYKNKAKAYLLEGNKSQANICFQ 120
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
KAVDI+P +A LI+ L+ V Y+VAPYEADAQ+T+L+++ QV+A+ITEDSDL+ FG +
Sbjct: 121 KAVDITPRMAFLLIKELRALKVEYLVAPYEADAQLTYLSITGQVDAIITEDSDLVAFGAT 180
Query: 181 RIIFKMDKFGQGVEFQCSMLQ--KNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKR 238
IIFKMDK+G E + L K F F + ML +MCILSGCDYL SL GMGLK
Sbjct: 181 HIIFKMDKYGYAQEIKTEDLGSCKKDGYDFIDFNQTMLRQMCILSGCDYLPSLSGMGLKT 240
Query: 239 AHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDP 286
+ L+ + + +KV K+LK + YE+ F KA TF+HQRV+DP
Sbjct: 241 SFKLLKQHRDIEKVFKYLKREKSNFSQEYEQQFYKADFTFKHQRVFDP 288
>sp|Q803U7|EXO1_DANRE Exonuclease 1 OS=Danio rerio GN=exo1 PE=2 SV=1
Length = 806
Score = 273 bits (698), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 149/322 (46%), Positives = 201/322 (62%), Gaps = 9/322 (2%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGIQGLL +K P+H+K+ G VAVDTY WLHKGA SC+ +L KG PT +++ YCM
Sbjct: 1 MGIQGLLQFIKDASEPMHVKKYRGQTVAVDTYCWLHKGAFSCAEKLAKGEPTDQYVSYCM 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
V++L +GVKPIL+FDG LP K E E R R+ NL + + EG + + E +
Sbjct: 61 KFVDMLLSFGVKPILVFDGRNLPSKQEVEKSRRERRQANLQKGKQLLREGKITEARECFT 120
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
++V+I+PS+AH++I+ + + V +VAPYEADAQ+ FL S +AVITEDSDL+ FGC
Sbjct: 121 RSVNITPSMAHDVIRAARTRGVDCVVAPYEADAQLAFLNKSDIAQAVITEDSDLLAFGCK 180
Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAH 240
++I KMDK G G+E + L + K L FT++ MCILSGCDYLQSL G+GL +A
Sbjct: 181 KVILKMDKQGNGLEIEQCHLGRCKSLG-NIFTEEKFRYMCILSGCDYLQSLYGIGLGKAC 239
Query: 241 ALISKFKSYD--KVIK----HLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHL 294
L+ + D KVIK +LK +SVP Y E F KA TF +Q V+DP +V L
Sbjct: 240 KLLRMANNPDILKVIKKMGQYLKMD-ISVPEEYIEGFTKANNTFLYQLVFDPLRRKVVPL 298
Query: 295 SCISDNIGNDLDFLAKGIAIGD 316
+ D+I N G +GD
Sbjct: 299 NPYPDHI-NPAALSYAGTNVGD 319
>sp|Q9W6K2|EXO1_XENLA Exonuclease 1 OS=Xenopus laevis GN=exo1 PE=2 SV=1
Length = 734
Score = 263 bits (672), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 137/333 (41%), Positives = 206/333 (61%), Gaps = 17/333 (5%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGIQGLL LK P+H+K+ +G VAVDTY WLHKGA +C+ +L KG PT +++ +CM
Sbjct: 1 MGIQGLLQFLKEASEPVHVKKYKGKTVAVDTYCWLHKGAFACAEKLAKGEPTDQYVQFCM 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
V++L +GVKPIL+FDG LP K + E R R+ NL + + EG + + E +
Sbjct: 61 KLVHMLLSFGVKPILVFDGCTLPSKKDVEKARREKRQTNLQKGKQLLREGKLAEARECFS 120
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
++V+I+ S+AHE+I+ + + V YIVAPYEAD+Q+ +L + EA+ITEDSDL+ FGC
Sbjct: 121 RSVNITSSMAHEVIKAARSEGVDYIVAPYEADSQLAYLNKNDFAEAIITEDSDLLAFGCK 180
Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAH 240
+++ KMDKFG G+E + + L FT++ MCILSGCDYL S+ G+GL +A
Sbjct: 181 KVLLKMDKFGNGLEIDQARFGMCRSLG-DVFTEEKFRYMCILSGCDYLPSIHGIGLAKAC 239
Query: 241 ALISKFKSYD------KVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHL 294
L+ + D K+ ++LK + ++VP Y E F +A TF +Q V+DP ++ L
Sbjct: 240 KLLKVANNPDITKVIQKIGQYLK-TNITVPEGYIEGFLRANNTFLYQLVFDPVERKLIPL 298
Query: 295 SCISDNIG---------NDLDFLAKGIAIGDLD 318
+ +++ N D +A IA+G++D
Sbjct: 299 NPYGNDVNPEELNYAGPNMGDSVALQIALGNMD 331
>sp|Q9UQ84|EXO1_HUMAN Exonuclease 1 OS=Homo sapiens GN=EXO1 PE=1 SV=2
Length = 846
Score = 255 bits (651), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 141/344 (40%), Positives = 210/344 (61%), Gaps = 18/344 (5%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGIQGLL +K PIH+++ +G VAVDTY WLHKGA++C+ +L KG PT R++ +CM
Sbjct: 1 MGIQGLLQFIKEASEPIHVRKYKGQVVAVDTYCWLHKGAIACAEKLAKGEPTDRYVGFCM 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
VN+L +G+KPIL+FDG LP K E E R R+ NL + + EG S + E +
Sbjct: 61 KFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECFT 120
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
++++I+ ++AH++I+ + Q V +VAPYEADAQ+ +L + V+A+ITEDSDL+ FGC
Sbjct: 121 RSINITHAMAHKVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFGCK 180
Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAH 240
++I KMD+FG G+E + L + L FT++ MCILSGCDYL SL G+GL +A
Sbjct: 181 KVILKMDQFGNGLEIDQARLGMCRQLG-DVFTEEKFRYMCILSGCDYLSSLRGIGLAKAC 239
Query: 241 ALISKFKSYD--KVIK---HLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLS 295
++ + D KVIK H ++VP Y F +A TF +Q V+DP ++ L+
Sbjct: 240 KVLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIRANNTFLYQLVFDPIKRKLIPLN 299
Query: 296 CISDNIGNDL---------DFLAKGIAIGDLDPFTQLPFQEVSD 330
D++ + D +A IA+G+ D T F+++ D
Sbjct: 300 AYEDDVDPETLSYAGQYVDDSIALQIALGNKDINT---FEQIDD 340
>sp|Q9QZ11|EXO1_MOUSE Exonuclease 1 OS=Mus musculus GN=Exo1 PE=2 SV=2
Length = 837
Score = 254 bits (650), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 153/392 (39%), Positives = 228/392 (58%), Gaps = 22/392 (5%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGIQGLL ++ P+++K+ +G VAVDTY WLHKGA++C+ +L KG PT R++ +CM
Sbjct: 1 MGIQGLLQFIQEASEPVNVKKYKGQAVAVDTYCWLHKGAIACAEKLAKGEPTDRYVGFCM 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
VN+L YGVKPILIFDG LP K E E R R+ NL + + EG S + + +
Sbjct: 61 KFVNMLLSYGVKPILIFDGCTLPSKKEVERSRRERRQSNLLKGKQLLREGKVSEARDCFA 120
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
++++I+ ++AH++I+ + V +VAPYEADAQ+ +L + V+AVITEDSDL+ FGC
Sbjct: 121 RSINITHAMAHKVIKAARALGVDCLVAPYEADAQLAYLNKAGIVQAVITEDSDLLAFGCK 180
Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAH 240
++I KMD+FG G+E + L K L FT++ MCILSGCDYL SL G+GL +A
Sbjct: 181 KVILKMDQFGNGLEVDQARLGMCKQLG-DVFTEEKFRYMCILSGCDYLASLRGIGLAKAC 239
Query: 241 ALISKFKSYD--KVIK---HLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLS 295
++ + D KVIK H ++VP Y F +A TF +Q V+DP +V L+
Sbjct: 240 KVLRLANNPDIVKVIKKIGHYLRMNITVPEDYITGFIRANNTFLYQLVFDPIQRKLVPLN 299
Query: 296 CISDNIGNDL---------DFLAKGIAIGDLDPFTQLPFQEVSDNSHLVVGQNSHLKNFK 346
D++ + D +A IA+G+ D T F+++ D S + +S ++
Sbjct: 300 AYGDDVNPETLTYAGQYVGDSVALQIALGNRDVNT---FEQIDDYSPDTMPAHSRSHSWN 356
Query: 347 PESERKKLDLPVQKNLLTKKFTTPRISPNHFS 378
++ +K P N + K PR+ N S
Sbjct: 357 EKAGQK----PPGTNSIWHKNYCPRLEVNSVS 384
>sp|P39875|EXO1_YEAST Exodeoxyribonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=EXO1 PE=1 SV=2
Length = 702
Score = 234 bits (597), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 116/299 (38%), Positives = 182/299 (60%), Gaps = 2/299 (0%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGIQGLLP LK I P+ ++ EG +A+D Y+WLH+ A SC+ EL G PT +++ + +
Sbjct: 1 MGIQGLLPQLKPIQNPVSLRRYEGEVLAIDGYAWLHRAACSCAYELAMGKPTDKYLQFFI 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
R +LL+ + V+P L+FDG +P+K E+KR RKEN A A + G + +++Q
Sbjct: 61 KRFSLLKTFKVEPYLVFDGDAIPVKKSTESKRRDKRKENKAIAERLWACGEKKNAMDYFQ 120
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
K VDI+P +A +I K + YIVAP+EAD+QM +L V+ +I+EDSDL+ FGC
Sbjct: 121 KCVDITPEMAKCIICYCKLNGIRYIVAPFEADSQMVYLEQKNIVQGIISEDSDLLVFGCR 180
Query: 181 RIIFKMDKFGQGVEF-QCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRA 239
R+I K++ +G+ +E + + ++ K G T + ++ M LSGCDY +P +GL A
Sbjct: 181 RLITKLNDYGECLEICRDNFIKLPKKFPLGSLTNEEIITMVCLSGCDYTNGIPKVGLITA 240
Query: 240 HALISKFKSYDKVIKHL-KYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLSCI 297
L+ +F + +++I + + + +P Y + AVL FQ QRV+ P + IV L+ I
Sbjct: 241 MKLVRRFNTIERIILSIQREGKLMIPDTYINEYEAAVLAFQFQRVFCPIRKKIVSLNEI 299
>sp|P53695|EXO1_SCHPO Exodeoxyribonuclease 1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=exo1 PE=1 SV=1
Length = 571
Score = 234 bits (596), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 127/342 (37%), Positives = 195/342 (57%), Gaps = 12/342 (3%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGI+GLL LLK + H++E G + VD Y WLHK +C+ EL T +++ Y +
Sbjct: 1 MGIKGLLGLLKPMQKSSHVEEFSGKTLGVDGYVWLHKAVFTCAHELAFNKETDKYLKYAI 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
H+ +L++YGVKP+++FDGG LP K E KR R+E + EG S + +
Sbjct: 61 HQALMLQYYGVKPLIVFDGGPLPCKASTEQKRKERRQEAFELGKKLWDEGKKSQAIMQFS 120
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
+ VD++P +A +LI L++ + IVAPYEADAQ+ +L ++ +ITEDSD++ FG
Sbjct: 121 RCVDVTPEMAWKLIIALREHGIESIVAPYEADAQLVYLEKENIIDGIITEDSDMLVFGAQ 180
Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAH 240
++FKMD FG + + + + +DL+ + L M I SGCDY + GMGLK A
Sbjct: 181 TVLFKMDGFGNCITIRRNDIANAQDLNL-RLPIEKLRHMAIFSGCDYTDGVAGMGLKTAL 239
Query: 241 ALISKFKSYDKVIKHLKYS-TVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLS---- 295
+ K+ I+ ++ ++ VP +E+ F A L F+HQRVY PK + +VHLS
Sbjct: 240 RYLQKYPEPRAAIRAMRLDKSLKVPVSFEKEFALADLAFRHQRVYCPKDKTLVHLSPPER 299
Query: 296 --CISDN--IGNDLDF-LAKGIAIGDLDPFTQLPFQEVSDNS 332
+ ++ IG+ D LA IA G +P T+ F ++ D+S
Sbjct: 300 ELSVHEDAFIGSFFDNQLAIDIAEGRSNPITKCAF-DIKDSS 340
>sp|Q24558|EXO1_DROME Exonuclease 1 OS=Drosophila melanogaster GN=tos PE=1 SV=1
Length = 732
Score = 230 bits (586), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 129/338 (38%), Positives = 183/338 (54%), Gaps = 17/338 (5%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGI GL+P + +H+K++ G VAVDTY WLHKG C+ +L +G T +I YC+
Sbjct: 1 MGITGLIPFVGKASSQLHLKDIRGSTVAVDTYCWLHKGVFGCAEKLARGEDTDVYIQYCL 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
VN+L Y +KPIL+FDG LP K E +R SRK++ RA E G + +
Sbjct: 61 KYVNMLLSYDIKPILVFDGQHLPAKALTEKRRRDSRKQSKERAAELLRLGRIEEARSHMR 120
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
+ VD++ +A LI+ + +NV IVAPYEADAQM +L + + +ITEDSDL FG
Sbjct: 121 RCVDVTHDMALRLIRECRSRNVDCIVAPYEADAQMAWLNRADVAQYIITEDSDLTLFGAK 180
Query: 181 RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAH 240
IIFK+D G G+ + L + + MCILSGCDYL SLPG+GL +A
Sbjct: 181 NIIFKLDLNGSGLLVEAEKLHLAMGCTEEKYHFDKFRRMCILSGCDYLDSLPGIGLAKAC 240
Query: 241 ALISKFKSYD------KVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHL 294
I K + D K+ +L + V Y E+F KA TF+H +Y+P + L
Sbjct: 241 KFILKTEQEDMRIALKKIPSYLNMRNLEVDDDYIENFMKAEATFRHMFIYNPLERRMQRL 300
Query: 295 SCISD---------NIGNDLDFLAKG--IAIGDLDPFT 321
+ D N G L+ + +A+G+L+PF+
Sbjct: 301 CALEDYETDERYCSNAGTLLEDSEQALHLALGNLNPFS 338
>sp|Q12086|DIN7_YEAST DNA damage-inducible protein DIN7 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DIN7 PE=2 SV=1
Length = 430
Score = 182 bits (462), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 100/307 (32%), Positives = 170/307 (55%), Gaps = 6/307 (1%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLPTSRHIDYCM 60
MGI GLLP LK I + +K+ +A+D Y+WLH+ + +C+ EL PT++++ + +
Sbjct: 1 MGIPGLLPQLKRIQKQVSLKKYMYQTLAIDGYAWLHRASCACAFELVMNKPTNKYLQFFI 60
Query: 61 HRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQ 120
R+ LL+ +KP ++FDG L +K E +R + R EN A + S GN + E++Q
Sbjct: 61 KRLQLLKRLKIKPYIVFDGDSLFVKNHTETRRRKKRLENEMIAKKLWSAGNRYNAMEYFQ 120
Query: 121 KAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCS 180
K+VDI+P +A +I K ++ YIVAP+EAD QM +L ++ +I+EDSDL+ FGC
Sbjct: 121 KSVDITPEMAKCIIDYCKLHSIPYIVAPFEADPQMVYLEKMGLIQGIISEDSDLLVFGCK 180
Query: 181 RIIFKMDKFGQGVEF---QCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLK 237
+I K++ G+ +E S L +N G ++Q + L+GCDY + +G+
Sbjct: 181 TLITKLNDQGKALEISKDDFSALPEN--FPLGELSEQQFRNLVCLAGCDYTSGIWKVGVV 238
Query: 238 RAHALISKFKSY-DKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLSC 296
A ++ ++ D +I+ + + +++ A FQ+QRV+ P + I L+
Sbjct: 239 TAMKIVKRYSEMKDILIQIERTEKLCFSKAFKQQVEFANYAFQYQRVFCPLSNQITTLNN 298
Query: 297 ISDNIGN 303
I + N
Sbjct: 299 IPKAVTN 305
>sp|Q7Q323|FEN1_ANOGA Flap endonuclease 1 OS=Anopheles gambiae GN=Fen1 PE=3 SV=2
Length = 383
Score = 119 bits (298), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 90/298 (30%), Positives = 150/298 (50%), Gaps = 15/298 (5%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDTYSWLHKGALSCSRELCK----GLP 51
MGI+GL L+ I P +KE E G VA+D L++ ++ E +
Sbjct: 1 MGIKGLSQLIADIA-PFAVKEGEIKQFFGRKVAIDASMCLYQFLIAVRAEGAQLTSVDGE 59
Query: 52 TSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGN 111
T+ H+ +R L G+KP+ +FDG +K + NKRA R+E +A++ +E
Sbjct: 60 TTSHLMGTFYRTIRLLENGIKPVYVFDGKPPDLKSGELNKRA-ERREEAQKALDKATEAG 118
Query: 112 SSASYE-FYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITE 170
++ E F ++ V ++ A+E ++L+ V Y+ AP EA+AQ L + +V A TE
Sbjct: 119 ATEDIEKFNRRLVKVTKHHANEAKELLRLMGVPYVEAPCEAEAQCAALVRAGKVYATATE 178
Query: 171 DSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQS 230
D D + FG S I+ + F + + K L T+ +++CIL GCDY +
Sbjct: 179 DMDALTFG-SNILLRHLTFSEARKMPVQEFAYEKVLKGFELTQDEFIDLCILLGCDYCDT 237
Query: 231 LPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKT 288
+ G+G K+A LI+K +S +K+++HL VP + ++ +A F+ V D T
Sbjct: 238 IRGIGPKKAIELINKHRSIEKILEHLDRQKYIVPEGW--NYEQARKLFKEPEVQDADT 293
>sp|B3MDA3|FEN1_DROAN Flap endonuclease 1 OS=Drosophila ananassae GN=Fen1 PE=3 SV=1
Length = 388
Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 138/275 (50%), Gaps = 15/275 (5%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDTYSWLHKGALSCSRE-----LCKGL 50
MGI GL L+ + P I+E E G VA+D L++ ++ E G
Sbjct: 1 MGILGLSKLIAD-LAPQAIRESEIKNFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGD 59
Query: 51 PTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEG 110
PTS H+ +R L G+KP+ +FDG +K + KRA R+E +A++ +E
Sbjct: 60 PTS-HLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRA-ERREEAEKALKAATEA 117
Query: 111 NSSASYE-FYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVIT 169
A E F ++ V ++ A E ++LK V Y+ AP EA+AQ L + +V A T
Sbjct: 118 GDDAEIEKFNRRLVRVTKEHAREAKELLKLMGVPYVEAPCEAEAQCAALVKAGKVYATAT 177
Query: 170 EDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQ 229
ED D + FG ++++ + + + + K L G + +++CIL GCDY +
Sbjct: 178 EDMDALTFGSTKLLRYL-TYSEARKMPVKEFSYEKLLDGLGVNNREFIDLCILLGCDYCE 236
Query: 230 SLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVP 264
S+ G+G KRA LI+ ++ + ++ +L S +VP
Sbjct: 237 SIKGIGPKRAIELINNYRDIETILDNLDTSKYTVP 271
>sp|A7RRJ0|FEN1_NEMVE Flap endonuclease 1 OS=Nematostella vectensis GN=FEN1 PE=3 SV=1
Length = 377
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 143/296 (48%), Gaps = 13/296 (4%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDT----YSWLHKGALSCSRELCKGLP 51
MGIQGL LL I P IKE E G +A+D Y +L S+ +
Sbjct: 1 MGIQGLAKLLGDIA-PSGIKENEIKNYFGRKIAIDASMSIYQFLIAVRSDGSQLTNEAGE 59
Query: 52 TSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGN 111
T+ H+ +R + G+KP+ +FDG +K + KR R+E + E G+
Sbjct: 60 TTSHLMGLFYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRTERREEAQKALSKAEEAGD 119
Query: 112 SSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITED 171
+ +F ++ V ++ E Q+LK + Y+ AP EA+AQ L S +V A TED
Sbjct: 120 TENIDKFSRRLVRVTKEHNEECKQLLKLMGIPYVEAPCEAEAQCAALVKSGKVYATGTED 179
Query: 172 SDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSL 231
D + FG + ++ + F + + LS G ++ +++CIL GCDY S+
Sbjct: 180 MDALTFGTT-VMLRHLTFSEAKKMPIKEFHLQNVLSEAGLSQDEFIDLCILLGCDYCDSI 238
Query: 232 PGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPK 287
G+G KR+ LI + +S DK+++++ T PP + +A F++ V +P+
Sbjct: 239 KGIGPKRSVDLIRQHRSIDKILENI--DTSKHPPPENWLYKEARELFKNPEVRNPE 292
>sp|D3TQJ5|FEN1_GLOMM Flap endonuclease 1 OS=Glossina morsitans morsitans GN=Fen1 PE=2
SV=1
Length = 382
Score = 114 bits (284), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 145/296 (48%), Gaps = 15/296 (5%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDTYSWLHKGALSCSRELCK----GLP 51
MGI GL L+ I P IKE + G VA+D L++ ++ E +
Sbjct: 1 MGILGLSKLIADI-CPQAIKESDIKNYFGRKVAIDASMCLYQFLIAVRAEGAQLTNVDGE 59
Query: 52 TSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESE-G 110
T+ H+ +R L G+KP+ +FDG K + KRA R+E+ +A+E +E G
Sbjct: 60 TTSHLMGMFYRTIRLLENGIKPVYVFDGKPPISKSGELAKRA-ERREDAQKALEKATEAG 118
Query: 111 NSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITE 170
N + +F ++ V ++ A+E ++LK V Y+ AP EA+AQ L + +V A TE
Sbjct: 119 NEADMDKFNRRLVKVTKEHANEAKELLKLMGVPYVEAPCEAEAQCAALVKAGKVYATATE 178
Query: 171 DSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQS 230
D D + FG S I+ + F + + K L G T Q +++CIL GCDY
Sbjct: 179 DMDALTFG-SGILLRHLTFSEARKMPVKEFSYAKVLDGFGLTSQEFIDLCILLGCDYCDG 237
Query: 231 LPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDP 286
+ G+G KRA L++ +K + +++ + +VP + + + F + V DP
Sbjct: 238 IRGIGPKRATELMNSYKDIETILEKIDRKKYTVPEDWNYQIAREL--FVNPEVADP 291
>sp|B4J6M4|FEN1_DROGR Flap endonuclease 1 OS=Drosophila grimshawi GN=Fen1 PE=3 SV=1
Length = 388
Score = 113 bits (282), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 87/302 (28%), Positives = 150/302 (49%), Gaps = 17/302 (5%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDTYSWLHKGALSCSRE-----LCKGL 50
MGI GL L+ + P+ I+E E G VA+D L++ ++ E G
Sbjct: 1 MGILGLSKLIAD-LAPLAIRESEIKNFFGRKVAIDASMCLYQFLIAVRSEGAQLAAVNGD 59
Query: 51 PTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEG 110
PTS H+ +R L G+KP+ +FDG MK + KRA R++ +A++ +E
Sbjct: 60 PTS-HLMGMFYRTIRLLDNGIKPVYVFDGAPPDMKSGELAKRA-ERRDEAEKALKAATEA 117
Query: 111 NSSASYE-FYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVIT 169
A E F ++ V ++ + E ++LK V Y+ AP EA+AQ L + +V A T
Sbjct: 118 GDEAQIEKFNRRLVRVTKEHSREAKELLKLMGVPYVDAPCEAEAQCAALVKAGKVYATAT 177
Query: 170 EDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQ 229
ED D + FG +++ + + + + +K L T + +++CIL GCDY +
Sbjct: 178 EDMDALTFGSCKLLRYL-TYSEARKMPVKEFSYDKVLQGLELTSKEFIDLCILMGCDYCE 236
Query: 230 SLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTE 289
S+ G+G KRA LI ++ + +++++ + +VP + ++ +A F V D T
Sbjct: 237 SIRGVGPKRAIELIKSYRDIETILENIDTNKYAVPENW--NYKRARELFIEPDVTDASTI 294
Query: 290 DI 291
D+
Sbjct: 295 DL 296
>sp|B3RVF0|FEN1_TRIAD Flap endonuclease 1 OS=Trichoplax adhaerens GN=FEN1 PE=3 SV=1
Length = 377
Score = 112 bits (280), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 134/273 (49%), Gaps = 11/273 (4%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDTYSWLHKGALSCSRE----LCKGLP 51
MGI GL L+ P IKE E G VA+D +++ ++ + +
Sbjct: 1 MGIHGLAKLIAD-HAPSAIKENEIKNYFGRKVAIDASMSIYQFLIAVRSDGNVLTNEAGE 59
Query: 52 TSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGN 111
T+ H+ +R + G+KP+ +FDG +K + +R R+E +A E E EG+
Sbjct: 60 TTSHLMGLFYRTIRMMENGIKPVYVFDGKPPRLKSGELARRQERREEAQKQASEAEKEGD 119
Query: 112 SSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITED 171
+ +F ++ V ++P E ++LK V + AP EA++Q L + +V A TED
Sbjct: 120 ADNIDKFTRRTVRMTPEHCEEGKKLLKLMGVPVVQAPCEAESQCAALVKAGKVYATGTED 179
Query: 172 SDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSL 231
D + FG S ++ + F + + L F+ + +++CIL GCDY S+
Sbjct: 180 MDALTFG-SNVMLRHLTFSEARKMPIQEFHLKNALQELNFSMEQFIDLCILLGCDYCDSI 238
Query: 232 PGMGLKRAHALISKFKSYDKVIKHLKYSTVSVP 264
G+G KRA LI K+KS + ++K++ +VP
Sbjct: 239 KGVGPKRAVGLIEKYKSIEDIVKNISSEKFTVP 271
>sp|Q178M1|FEN1_AEDAE Flap endonuclease 1 OS=Aedes aegypti GN=Fen1 PE=3 SV=1
Length = 380
Score = 112 bits (280), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 149/296 (50%), Gaps = 15/296 (5%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDTYSWLHKGALSCSRELCK----GLP 51
MGI+GL L+ + P +KE E G VA+D L++ ++ E +
Sbjct: 1 MGIKGLSQLIAD-LAPFAVKEGEIKNFFGRKVAIDASMCLYQFLIAVRAEGAQLTSVDGE 59
Query: 52 TSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGN 111
T+ H+ +R L G+KP+ +FDG +K + KRA R+E +A++ +E
Sbjct: 60 TTSHLMGTFYRTIRLLENGIKPVYVFDGKPPDLKSGELTKRAEKREEA-QKALDKATEAG 118
Query: 112 SSASYE-FYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITE 170
+ + F ++ V ++ ++E ++LK V Y+ AP EA+AQ L +V A TE
Sbjct: 119 VTEDIDKFNRRLVKVTKQHSNEAKELLKLMGVPYVDAPCEAEAQCAALVKGGKVYATATE 178
Query: 171 DSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQS 230
D D + FG S I+ + F + + +K L T+ +++CIL GCDY S
Sbjct: 179 DMDALTFG-SNILLRHLTFSEARKMPVQEFNYDKILQGLELTRDEFIDLCILLGCDYCDS 237
Query: 231 LPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDP 286
+ G+G K+A LI+K ++ +K++++L VP + ++ +A + F+ V +P
Sbjct: 238 IRGIGPKKAVELINKHRTIEKILENLDTKKYVVPENW--NYQQARVLFKEPEVANP 291
>sp|B4KNM1|FEN1_DROMO Flap endonuclease 1 OS=Drosophila mojavensis GN=Fen1 PE=3 SV=1
Length = 388
Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/302 (28%), Positives = 149/302 (49%), Gaps = 17/302 (5%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDTYSWLHKGALSCSRE-----LCKGL 50
MGI GL L+ + P+ I+E E G VA+D L++ ++ E G
Sbjct: 1 MGILGLSKLIAD-LAPLAIRESEIKNFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGD 59
Query: 51 PTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEG 110
PTS H+ +R L G+KP+ +FDG +K + KRA R+E +A++ ++
Sbjct: 60 PTS-HLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKAGELAKRA-ERREEAEKALKVATDA 117
Query: 111 NSSASYE-FYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVIT 169
A E F ++ V ++ ++E ++LK V Y+ AP EA+AQ L + +V A T
Sbjct: 118 GDEAEIEKFNRRLVRVTKEHSNEAKELLKLMGVPYVDAPCEAEAQCAALVKAGKVYATAT 177
Query: 170 EDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQ 229
ED D + FG +++ + + + + +K L T + +++CIL GCDY
Sbjct: 178 EDMDALTFGSCKLLRYL-TYSEARKMPVKEFSYDKVLQGLELTSKEFIDLCILMGCDYCD 236
Query: 230 SLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTE 289
S+ G+G KRA LI ++ + +++++ S VP + ++ +A F V D T
Sbjct: 237 SIKGIGPKRAIELIKTYRDIETILENIDTSKYIVPENW--NYQRARELFVEPEVTDASTI 294
Query: 290 DI 291
D+
Sbjct: 295 DL 296
>sp|B4MR84|FEN1_DROWI Flap endonuclease 1 OS=Drosophila willistoni GN=Fen1 PE=3 SV=1
Length = 388
Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 138/275 (50%), Gaps = 15/275 (5%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDTYSWLHKGALSCSRE-----LCKGL 50
MGI GL L+ + P I+E E G VA+D L++ ++ E G
Sbjct: 1 MGILGLSKLIAD-LAPQAIRESEIKNFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGD 59
Query: 51 PTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEG 110
PTS H+ +R L G+KP+ +FDG +K + KRA R+E +A++ +E
Sbjct: 60 PTS-HLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRA-ERREEAEKALKAATEA 117
Query: 111 NSSASYE-FYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVIT 169
A E F ++ V ++ A E ++LK V Y+ AP EA+AQ L + +V A T
Sbjct: 118 GDEAEIEKFNRRLVRVTKEHAREAKELLKLMGVPYVDAPCEAEAQCAALVKAGKVYATAT 177
Query: 170 EDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQ 229
ED D + FG S+++ + + + + K L ++ +++CIL GCDY +
Sbjct: 178 EDMDALTFGSSKLL-RYLTYSEARKMPVKEFTYEKLLQGLELNQREFIDLCILLGCDYCE 236
Query: 230 SLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVP 264
S+ G+G KRA LI+ ++ + ++ +L S +VP
Sbjct: 237 SIKGIGPKRAIELINSYRDIETILDNLDTSKYTVP 271
>sp|B4HTA1|FEN1_DROSE Flap endonuclease 1 OS=Drosophila sechellia GN=Fen1 PE=3 SV=1
Length = 385
Score = 109 bits (272), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 137/275 (49%), Gaps = 15/275 (5%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDTYSWLHKGALSCSRE-----LCKGL 50
MGI GL L+ + P I+E E G VA+D L++ ++ E G
Sbjct: 1 MGILGLSKLIAD-LAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGD 59
Query: 51 PTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEG 110
PTS H+ +R L G+KP+ +FDG +K + KRA R+E +A++ ++
Sbjct: 60 PTS-HLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRA-ERREEAEKALKAATDA 117
Query: 111 NSSASYE-FYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVIT 169
A E F ++ V ++ A E ++L V Y+ AP EA+AQ L + +V A T
Sbjct: 118 GDDAGIEKFNRRLVRVTKEHAKEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATAT 177
Query: 170 EDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQ 229
ED D + FG ++++ + + + + +K L + +++CIL GCDY +
Sbjct: 178 EDMDALTFGSTKLLRYL-TYSEARKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDYCE 236
Query: 230 SLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVP 264
S+ G+G KRA LI+ ++ + ++ +L S +VP
Sbjct: 237 SIKGIGPKRAIELINTYRDIETILDNLDSSKYTVP 271
>sp|B4QIG6|FEN1_DROSI Flap endonuclease 1 OS=Drosophila simulans GN=Fen1 PE=3 SV=1
Length = 385
Score = 108 bits (271), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 137/275 (49%), Gaps = 15/275 (5%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDTYSWLHKGALSCSRE-----LCKGL 50
MGI GL L+ + P I+E E G VA+D L++ ++ E G
Sbjct: 1 MGILGLSKLIAD-LAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGD 59
Query: 51 PTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEG 110
PTS H+ +R L G+KP+ +FDG +K + KRA R+E +A++ ++
Sbjct: 60 PTS-HLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRA-ERREEAEKALKAATDA 117
Query: 111 NSSASYE-FYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVIT 169
A E F ++ V ++ A E ++L V Y+ AP EA+AQ L + +V A T
Sbjct: 118 GDDAGIEKFNRRLVRVTKEHAKEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATAT 177
Query: 170 EDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQ 229
ED D + FG ++++ + + + + +K L + +++CIL GCDY +
Sbjct: 178 EDMDALTFGSTKLLRYL-TYSEARKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDYCE 236
Query: 230 SLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVP 264
S+ G+G KRA LI+ ++ + ++ +L S +VP
Sbjct: 237 SIKGIGPKRAIELINTYRDIETILDNLDSSKYTVP 271
>sp|Q7K7A9|FEN1_DROME Flap endonuclease 1 OS=Drosophila melanogaster GN=Fen1 PE=2 SV=1
Length = 385
Score = 108 bits (271), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 137/275 (49%), Gaps = 15/275 (5%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDTYSWLHKGALSCSRE-----LCKGL 50
MGI GL L+ + P I+E E G VA+D L++ ++ E G
Sbjct: 1 MGILGLSKLIAD-LAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGD 59
Query: 51 PTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEG 110
PTS H+ +R L G+KP+ +FDG +K + KRA R+E +A++ ++
Sbjct: 60 PTS-HLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRA-ERREEAEKALKAATDA 117
Query: 111 NSSASYE-FYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVIT 169
A E F ++ V ++ A E ++L V Y+ AP EA+AQ L + +V A T
Sbjct: 118 GDDAGIEKFNRRLVRVTKEHAKEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATAT 177
Query: 170 EDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQ 229
ED D + FG ++++ + + + + +K L + +++CIL GCDY +
Sbjct: 178 EDMDALTFGSTKLLRYL-TYSEARKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDYCE 236
Query: 230 SLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVP 264
S+ G+G KRA LI+ ++ + ++ +L S +VP
Sbjct: 237 SIKGIGPKRAIELINTYRDIETILDNLDSSKYTVP 271
>sp|B4P5U9|FEN1_DROYA Flap endonuclease 1 OS=Drosophila yakuba GN=Fen1 PE=3 SV=1
Length = 387
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 137/275 (49%), Gaps = 15/275 (5%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDTYSWLHKGALSCSRE-----LCKGL 50
MGI GL L+ + P I+E E G VA+D L++ ++ E G
Sbjct: 1 MGILGLSKLIAD-LAPQAIRESEIKNFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGD 59
Query: 51 PTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEG 110
PTS H+ +R L G+KP+ +FDG +K + KRA R+E +A++ ++
Sbjct: 60 PTS-HLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRA-ERREEAEKALKAATDA 117
Query: 111 NSSASYE-FYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVIT 169
A E F ++ V ++ A+E ++L V Y+ AP EA+AQ L + +V A T
Sbjct: 118 GDDAGIEKFNRRLVRVTKEHANEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATAT 177
Query: 170 EDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQ 229
ED D + FG ++++ + + + + K L + +++CIL GCDY +
Sbjct: 178 EDMDALTFGSTKLLRYL-TYSEARKMPVKEFSYEKLLEGLSINSREFIDLCILLGCDYCE 236
Query: 230 SLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVP 264
S+ G+G KRA LI+ ++ + ++ +L S +VP
Sbjct: 237 SIKGIGPKRAIELINNYRDIETILDNLDSSKYTVP 271
>sp|B4LM90|FEN1_DROVI Flap endonuclease 1 OS=Drosophila virilis GN=Fen1 PE=3 SV=1
Length = 386
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 137/275 (49%), Gaps = 15/275 (5%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDTYSWLHKGALSCSRE-----LCKGL 50
MGI GL L+ + P I+E E G VA+D L++ ++ E G
Sbjct: 1 MGILGLSKLIAD-LAPQAIRESEIKNFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGD 59
Query: 51 PTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEG 110
PTS H+ +R L G+KP+ +FDG +K + KRA R+E +A++ +E
Sbjct: 60 PTS-HLMGMFYRTIRLLDNGIKPVYVFDGQPPDLKSGELAKRA-ERREEAEKALKAATEA 117
Query: 111 NSSASYE-FYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVIT 169
A + F ++ V ++ + E ++LK V Y+ AP EA+AQ L + +V A T
Sbjct: 118 GDEAEIDKFNRRLVRVTKEHSREAKELLKLMGVPYVDAPCEAEAQCAALVKAGKVYATAT 177
Query: 170 EDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQ 229
ED D + FG +++ + + + + +K L T + +++CIL GCDY +
Sbjct: 178 EDMDALTFGSCKLLRYL-TYSEARKMPVKEFSYDKVLQGLELTSKEFIDLCILMGCDYCE 236
Query: 230 SLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVP 264
S+ G+G KRA LI ++ + +++++ S VP
Sbjct: 237 SIKGVGPKRAIELIKSYRDIETILENIDTSKYPVP 271
>sp|B3NP61|FEN1_DROER Flap endonuclease 1 OS=Drosophila erecta GN=Fen1 PE=3 SV=1
Length = 387
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 137/275 (49%), Gaps = 15/275 (5%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDTYSWLHKGALSCSRE-----LCKGL 50
MGI GL L+ + P I+E E G VA+D L++ ++ E G
Sbjct: 1 MGILGLSKLIAD-LAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGD 59
Query: 51 PTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEG 110
PTS H+ +R L G+KP+ +FDG +K + KRA R+E +A++ ++
Sbjct: 60 PTS-HLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRA-ERREEAEKALKAATDA 117
Query: 111 NSSASYE-FYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVIT 169
A E F ++ V ++ A E ++L V Y+ AP EA+AQ L + +V A T
Sbjct: 118 GDDAGIEKFNRRLVRVTKEHAKEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATAT 177
Query: 170 EDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQ 229
ED D + FG ++++ + + + + +K L + +++CIL GCDY +
Sbjct: 178 EDMDALTFGSTKLLRYL-TYSEARKMPVKEFSYDKLLEGLSINSREFIDLCILLGCDYCE 236
Query: 230 SLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVP 264
S+ G+G KRA LI+ ++ + ++ +L S +VP
Sbjct: 237 SIKGIGPKRAIELINNYRDIETILDNLDSSKYTVP 271
>sp|B5DUR8|FEN1_DROPS Flap endonuclease 1 OS=Drosophila pseudoobscura pseudoobscura
GN=Fen1 PE=3 SV=1
Length = 386
Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 137/275 (49%), Gaps = 15/275 (5%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDTYSWLHKGALSCSRE-----LCKGL 50
MGI GL L+ + P I+E E G VA+D L++ ++ E G
Sbjct: 1 MGILGLSKLIAD-LAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGD 59
Query: 51 PTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEG 110
PTS H+ +R L G+KP+ +FDG +K + KRA R+E +A++ ++
Sbjct: 60 PTS-HLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRA-ERREEAEKALKAATDA 117
Query: 111 NSSASYE-FYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVIT 169
A E F ++ V ++ A E ++L V Y+ AP EA+AQ L + +V A T
Sbjct: 118 GDDAEIEKFNRRLVRVTKEHAREAKELLSLMGVPYVDAPCEAEAQCAALVKAGKVYATAT 177
Query: 170 EDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQ 229
ED D + FG ++++ + + + + +K L + +++CIL GCDY +
Sbjct: 178 EDMDALTFGSTKLLRYL-TYSEARKMPVKEFSYDKLLEGLEVNNREFIDLCILLGCDYCE 236
Query: 230 SLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVP 264
S+ G+G KRA LI+ ++ + ++ +L S +VP
Sbjct: 237 SIKGIGPKRAIELINNYRDIETILDNLDTSKYTVP 271
>sp|B4GIM3|FEN1_DROPE Flap endonuclease 1 OS=Drosophila persimilis GN=Fen1 PE=3 SV=1
Length = 386
Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 137/275 (49%), Gaps = 15/275 (5%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDTYSWLHKGALSCSRE-----LCKGL 50
MGI GL L+ + P I+E E G VA+D L++ ++ E G
Sbjct: 1 MGILGLSKLIAD-LAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGD 59
Query: 51 PTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEG 110
PTS H+ +R L G+KP+ +FDG +K + KRA R+E +A++ ++
Sbjct: 60 PTS-HLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRA-ERREEAEKALKAATDA 117
Query: 111 NSSASYE-FYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVIT 169
A E F ++ V ++ A E ++L V Y+ AP EA+AQ L + +V A T
Sbjct: 118 GDDAEIEKFNRRLVRVTKEHAREAKELLSLMGVPYVDAPCEAEAQCAALVKAGKVYATAT 177
Query: 170 EDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQ 229
ED D + FG ++++ + + + + +K L + +++CIL GCDY +
Sbjct: 178 EDMDALTFGSTKLLRYL-TYSEARKMPVKEFSYDKLLEGLEVNNREFIDLCILLGCDYCE 236
Query: 230 SLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVP 264
S+ G+G KRA LI+ ++ + ++ +L S +VP
Sbjct: 237 SIKGIGPKRAIELINNYRDIETILDNLDTSKYTVP 271
>sp|Q75LI2|FEN12_ORYSJ Flap endonuclease 1-B OS=Oryza sativa subsp. japonica GN=FEN-1b
PE=2 SV=1
Length = 412
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 141/287 (49%), Gaps = 27/287 (9%)
Query: 1 MGIQGLLPLLK----SIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLP----- 51
MGI+GL LL + +++ G VA+DT +++ + R+ + L
Sbjct: 1 MGIKGLTKLLAEHAPGAAVRRRVEDYRGRVVAIDTSLSIYQFLIVVGRKGTEVLTNEAGE 60
Query: 52 TSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSR---KENLARAIECES 108
+ H+ ++R + G+KP+ +FDG MK ++ KR+ R E+L RAIE
Sbjct: 61 VTSHLQGMLNRTVRILEAGIKPVFVFDGEPPDMKKKELAKRSLKRDGSSEDLNRAIEV-- 118
Query: 109 EGNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVI 168
G+ +F ++ V ++ + ++L V + AP EA+AQ L + +V A+
Sbjct: 119 -GDEDLIEKFSKRTVKVTKKHNEDCKRLLSLMGVPVVQAPGEAEAQCAALCENHKVFAIA 177
Query: 169 TEDSDLIPFGCSRIIFKMD----KFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSG 224
+ED D + FG R + + K EF+ S K L G T +++CILSG
Sbjct: 178 SEDMDSLTFGARRFLRHLTDLSFKRSPVTEFEVS-----KVLEELGLTMDQFIDLCILSG 232
Query: 225 CDYLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVP---PFYE 268
CDY +++ G+G +RA LI + ++V+++L + SVP P+ E
Sbjct: 233 CDYCENIRGIGGQRALKLIRQHGYIEEVVQNLSQTRYSVPEDWPYQE 279
>sp|B8AMS4|FEN12_ORYSI Flap endonuclease 1-B OS=Oryza sativa subsp. indica GN=FEN1b PE=3
SV=1
Length = 412
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 141/287 (49%), Gaps = 27/287 (9%)
Query: 1 MGIQGLLPLLK----SIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLP----- 51
MGI+GL LL + +++ G VA+DT +++ + R+ + L
Sbjct: 1 MGIKGLTKLLAEHAPGAAVRRRVEDYRGRVVAIDTSLSIYQFLIVVGRKGTEVLTNEAGE 60
Query: 52 TSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSR---KENLARAIECES 108
+ H+ ++R + G+KP+ +FDG MK ++ KR+ R E+L RAIE
Sbjct: 61 VTSHLQGMLNRTVRILEAGIKPVFVFDGEPPDMKKKELAKRSLKRDGSSEDLNRAIEV-- 118
Query: 109 EGNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVI 168
G+ +F ++ V ++ + ++L V + AP EA+AQ L + +V A+
Sbjct: 119 -GDEDLIEKFSKRTVKVTKKHNEDCKRLLSLMGVPVVQAPGEAEAQCAALCENHKVFAIA 177
Query: 169 TEDSDLIPFGCSRIIFKMD----KFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSG 224
+ED D + FG R + + K EF+ S K L G T +++CILSG
Sbjct: 178 SEDMDSLTFGARRFLRHLTDLSFKRSPVTEFEVS-----KVLEELGLTMDQFIDLCILSG 232
Query: 225 CDYLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVP---PFYE 268
CDY +++ G+G +RA LI + ++V+++L + SVP P+ E
Sbjct: 233 CDYCENIRGIGGQRALKLIRQHGYIEEVVQNLSQTRYSVPEDWPYQE 279
>sp|A8M9L3|FEN_CALMQ Flap endonuclease 1 OS=Caldivirga maquilingensis (strain ATCC
700844 / DSMZ 13496 / JCM 10307 / IC-167) GN=fen PE=3
SV=1
Length = 350
Score = 103 bits (258), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 135/273 (49%), Gaps = 20/273 (7%)
Query: 17 IHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLP-------TSRHIDYCMHRVNLLRHY 69
+ +++L G +A+D Y+ L++ S + G P + H+ ++R L Y
Sbjct: 18 VSLEQLNGKLIALDAYNALYQFLASIRQ--PDGTPLMDSQGRVTSHLSGLLYRTINLLEY 75
Query: 70 GVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQKAVDISPSI 129
G+KP+ +FDG +K+ + KR R R++ + I+ EG S + ++ Q+A+ I+ +
Sbjct: 76 GIKPVYVFDGKPPELKLIEIEKRRRVREKAVEDWIKAVEEGKKSEARKYAQRALFITSDM 135
Query: 130 AHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSRIIFKMDKF 189
E ++L V ++ AP E +AQ ++A V A ++D D FG R++ +
Sbjct: 136 VDEAKRLLDSMGVPWVQAPSEGEAQAAYMASKGIVWAAGSQDYDSFLFGAPRLVRNLTIS 195
Query: 190 GQG--------VEFQCSMLQKNKDL-SFGGFTKQMLLEMCILSGCDY-LQSLPGMGLKRA 239
G+ VE +++ N L + + L+++ IL G DY + +PG+G +RA
Sbjct: 196 GRRKLPGRDEYVEVTPELIELNDVLKALRLRDRGQLIDLAILLGTDYNPEGIPGIGPQRA 255
Query: 240 HALISKFKSYDKVIKH-LKYSTVSVPPFYEESF 271
LI ++ S DK++ LK + V PF F
Sbjct: 256 LRLIQEYGSLDKLMNTVLKNAQFPVDPFKIREF 288
>sp|A9VB27|FEN1_MONBE Flap endonuclease 1 OS=Monosiga brevicollis GN=FEN1 PE=3 SV=1
Length = 368
Score = 103 bits (256), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 109/214 (50%), Gaps = 11/214 (5%)
Query: 55 HIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSA 114
H+ +R + ++G+KP+ +FDG MK + KR RKE A E +G++
Sbjct: 63 HLSGLFYRTIRMVNHGIKPLYVFDGKPPTMKSGELLKRGARRKEAQANLEEATEQGDTEQ 122
Query: 115 SYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDL 174
+F ++ V ++ + Q+L + +I+AP EA+AQ L +V A TED D
Sbjct: 123 MEKFSRRLVHVTREHNEQCRQLLTLMGIPFIIAPTEAEAQCAELVKGGKVFATATEDMDA 182
Query: 175 IPFGCSRIIFKMDKFGQG--VEFQCSMLQKNKDLSFGGFTKQM--LLEMCILSGCDYLQS 230
+ FG + ++ M F + + Q LQK GG M ++MCIL GCDY S
Sbjct: 183 LTFGTTVLLRHM-TFSEARKMPIQEFRLQK------GGLEMSMEEFIDMCILLGCDYCDS 235
Query: 231 LPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVP 264
+ G+G ++A+ LI + K+ + V+KHL +P
Sbjct: 236 IKGIGRQKAYQLIKEHKNIETVLKHLDPKKYVIP 269
>sp|A0B9M7|FEN_METTP Flap endonuclease 1 OS=Methanosaeta thermophila (strain DSM 6194 /
PT) GN=fen PE=3 SV=1
Length = 336
Score = 102 bits (255), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 141/303 (46%), Gaps = 19/303 (6%)
Query: 17 IHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLP-------TSRHIDYCMHRVNLLRHY 69
I ++ L GC +AVD ++ L++ LS R+ G P + H+ ++R+ L
Sbjct: 14 ISLENLSGCWIAVDGFNTLYQ-FLSIIRQ-PDGTPLMDASGRVTSHLSGLLYRMTNLIEV 71
Query: 70 GVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQKAVDISPSI 129
G++ +FDG P +++ AR++ + A E+ S+ + Q I+ I
Sbjct: 72 GIRVAFVFDG--TPPELKAGTLAARAQMKEAAEIQLQEAIATGVDSFRYAQATARINSEI 129
Query: 130 AHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSRII------ 183
H+ I++L + Y+ AP E +AQ F+A+ V+ V ++D D + FG R++
Sbjct: 130 LHDSIRLLDAMGIPYVQAPSEGEAQAAFMAIRGDVDYVASQDYDSLLFGAPRVVRNLAIT 189
Query: 184 --FKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAHA 241
KM + ++ ++ ++L+ G +++ L+++ I+ G DY + LP +G KRA
Sbjct: 190 GRRKMPRKNIYIDVPPEVIILEEELTRLGISREQLIDIGIMCGTDYNRGLPKVGPKRALK 249
Query: 242 LISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKTEDIVHLSCISDNI 301
LI + + V+ L S + E AV R+ P ++IV C N
Sbjct: 250 LIREHGCLEAVLDALGESIENFREIRELFLHPAVTESYELRMRKPMVDEIVGFLCNERNF 309
Query: 302 GND 304
D
Sbjct: 310 SED 312
>sp|Q4UFP0|FEN1_THEAN Flap endonuclease 1 OS=Theileria annulata GN=FEN1 PE=3 SV=1
Length = 506
Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 136/279 (48%), Gaps = 43/279 (15%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELEGCCV-----AVDTYSWLHKGALSC-------SRELCK 48
MGI+GL+P L S +P I EL C+ A+D + L++ ++ S K
Sbjct: 1 MGIKGLIPFL-SEKVPSSISELSLECLSGESLAIDASAALYQFTIAIRDSSYFSSLVNSK 59
Query: 49 GLPTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECES 108
G TS HI M+R + L YG+KP+ +FD +K + +KR + R+E + S
Sbjct: 60 GESTS-HIYGLMNRCSKLLEYGIKPVFVFDSKPPELKSKTLDKRRQKREEAKTDFKKAIS 118
Query: 109 EGNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVI 168
EG+ ++ + + V ++ + ++L+ + I A EA+AQ +L V
Sbjct: 119 EGDKESAKKLVGRTVKVTKDMNDSAKKLLRLMGIPVIEALEEAEAQCAYLVTKNLCHFVA 178
Query: 169 TEDSDLIPFG-----------CSRIIFKMD--KFGQGVEFQCSMLQKNKDLSFGGFTKQM 215
+ED+D + FG ++ I K+D K G+EF +F F
Sbjct: 179 SEDTDTLVFGGWFLLRNVTSSANKKIVKVDLQKVLDGLEF-----------NFDQF---- 223
Query: 216 LLEMCILSGCDYLQSLPGMGLKRAHALISKFKSYDKVIK 254
++ CIL GCDY +L G+G K A++L+ K++S +++++
Sbjct: 224 -VDFCILCGCDYCDTLEGVGPKTAYSLVKKYQSLEEIVR 261
>sp|Q54NU0|FEN1_DICDI Flap endonuclease 1 OS=Dictyostelium discoideum GN=repG PE=3 SV=1
Length = 384
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 136/284 (47%), Gaps = 26/284 (9%)
Query: 1 MGIQGLLPLLK-----SIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLP---- 51
MGI+ L L++ SI I +K G +A+D + L++ ++ + ++ L
Sbjct: 1 MGIKKLTDLIEDNAPTSIKTNI-LKNYFGRIIAIDASTSLYQFLIAMNADVSSALTNQLG 59
Query: 52 -TSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMK---IEQENKRARSRKENLARAIECE 107
T+ H+ +R L G+KPI +FDG +K + + R + KENL A E
Sbjct: 60 ETTSHLQGMFYRTIKLISRGIKPIYVFDGSAPVLKSGELAKRQARRKEAKENLKEATEV- 118
Query: 108 SEGNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAV 167
G + +F ++ + ++ + I++L V + AP EA+AQ + + A
Sbjct: 119 --GTNEEVQKFAKRVITVTRKQNEDCIKLLTLMGVPIVKAPCEAEAQCAEIVKKGKAWAT 176
Query: 168 ITEDSDLIPFGCS----RIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILS 223
+ED D + G + R+ F K +EF+ + L G T+ +++ IL
Sbjct: 177 GSEDMDSLTLGSTVLLRRLFFSEAKKMPILEFELQSV-----LEGLGLTQDEFIDLSILL 231
Query: 224 GCDYLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFY 267
GCDY S+ G+G KRA LI K KS ++VIKHL S +P F+
Sbjct: 232 GCDYCDSIKGIGPKRAIELIQKHKSLEEVIKHLDKSKYPLPEFF 275
>sp|C5WU23|FEN12_SORBI Flap endonuclease 1-B OS=Sorghum bicolor GN=FEN1-B PE=3 SV=2
Length = 428
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 118/234 (50%), Gaps = 24/234 (10%)
Query: 45 ELCKGLPTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKE---NLA 101
ELC H+ ++R + G+KP+ +FDG MK ++ KR+ R + +L
Sbjct: 87 ELCS------HLQGMLNRTVRMLEAGIKPVFVFDGEPPEMKKKELAKRSLKRDDATKDLN 140
Query: 102 RAIECESEGNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVS 161
RAIE G+ A +F ++ V ++ + ++L+ V + AP EA+AQ L +
Sbjct: 141 RAIEI---GDEDAVEKFSKRTVKVTRKHNDDCKRLLRLMGVPVVEAPGEAEAQCAALCEN 197
Query: 162 KQVEAVITEDSDLIPFGCSRIIFKMDKFGQG----VEFQCSMLQKNKDLSFGGFTKQMLL 217
QV AV +ED D + FG R + + G EF S K L G T +
Sbjct: 198 HQVYAVASEDMDSLTFGARRFLRHLTDLGYKKSPVTEFDVS-----KVLEELGLTMDQFI 252
Query: 218 EMCILSGCDYLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVP---PFYE 268
++CILSGCDY +++ G+G +RA LI + ++V+++L + SVP P+ E
Sbjct: 253 DLCILSGCDYCENIKGIGGQRALKLIRQHGCIEEVLQNLNQTRFSVPEDWPYQE 306
>sp|C3ZBT0|FEN1_BRAFL Flap endonuclease 1 OS=Branchiostoma floridae GN=FEN1 PE=3 SV=1
Length = 380
Score = 100 bits (250), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 133/273 (48%), Gaps = 11/273 (4%)
Query: 1 MGIQGLLPLLK----SIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELC-----KGLP 51
MGIQGL L+ M IK G VA+D +++ ++ ++ G
Sbjct: 1 MGIQGLAKLIGDHAPGAMKENEIKNYFGRKVAIDASMSIYQFLIAVRQDGNMLTNDAGEA 60
Query: 52 TSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGN 111
TS H+ +R + G+KP+ +FDG MK + KRA R+E + E G
Sbjct: 61 TS-HLMGMFYRTIRMVDNGIKPVYVFDGKPPNMKSGELAKRAERREEAQKALEKAEEAGE 119
Query: 112 SSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITED 171
+ +F ++ V ++ E ++L + Y+ AP EA+AQ LA +V A TED
Sbjct: 120 AEDVNKFQKRLVKVTKEHNAECKKLLTLMGIPYVDAPCEAEAQCAELAKKGKVYAAGTED 179
Query: 172 SDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSL 231
D++ FG + I+ + F + + ++ L+ T+ +++CIL GCDY S+
Sbjct: 180 MDVLTFG-TNIMLRHLTFSEARKMPIKEYYYDRLLAELDLTQDQFIDLCILLGCDYCDSI 238
Query: 232 PGMGLKRAHALISKFKSYDKVIKHLKYSTVSVP 264
G+G KRA LI ++KS ++++KH+ VP
Sbjct: 239 RGIGPKRAIELIRQYKSIEEILKHIDTKKFPVP 271
>sp|Q5ZLN4|FEN1_CHICK Flap endonuclease 1 OS=Gallus gallus GN=FEN1 PE=2 SV=1
Length = 381
Score = 100 bits (248), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 130/276 (47%), Gaps = 17/276 (6%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDT----YSWL---HKGALSCSRELCK 48
MGI GL L+ + P I+E + G VA+D Y +L +GA E +
Sbjct: 1 MGIHGLAKLIADVA-PSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGAEVLQNEEGE 59
Query: 49 GLPTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECES 108
T+ H+ +R + G+KP+ +FDG +K + KR R E E +
Sbjct: 60 ---TTSHLMGMFYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRTERRSEAEKHLQEAQE 116
Query: 109 EGNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVI 168
G + +F ++ V ++ E ++L + Y+ AP EA+A L + +V A
Sbjct: 117 AGEEANIEKFSKRLVKVTQQHTDECKKLLMLMGIPYVEAPGEAEASCATLVKAGKVYAAA 176
Query: 169 TEDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYL 228
TED D + FG S ++ + + + N+ L G T + +++CIL GCDY
Sbjct: 177 TEDMDCLTFG-SPVLMRHLTASEAKKLPIQEFHLNRVLQDLGLTWEQFVDLCILLGCDYC 235
Query: 229 QSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVP 264
+S+ G+G KRA LI + K+ +++I+H+ +P
Sbjct: 236 ESIRGIGPKRAVELIKQHKTIEEIIQHIDTKKYPLP 271
>sp|B3L014|FEN1_PLAKH Flap endonuclease 1 OS=Plasmodium knowlesi (strain H) GN=FEN1 PE=3
SV=1
Length = 595
Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 102/403 (25%), Positives = 175/403 (43%), Gaps = 58/403 (14%)
Query: 1 MGIQGLLPLLK----SIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKG------L 50
MGI+GL + + + I I+ L G VA+D L++ ++ G
Sbjct: 1 MGIKGLTKFIADAAPNAIKEIKIENLMGRVVAIDASMSLYQFIIAIRDSEQYGNLTNESG 60
Query: 51 PTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEG 110
T+ HI M R L G+KPI +FDG +K + KR R++ + + EG
Sbjct: 61 ETTSHISGLMSRSIKLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEEG 120
Query: 111 NSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITE 170
N + + V ++ E ++L + + AP EA++Q FL A TE
Sbjct: 121 NLEEIKKQSGRTVRVTKKQNEEAKKLLTLMGIPVVEAPCEAESQCAFLTKYNLAHATATE 180
Query: 171 DSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFT------KQML-------- 216
D+D + FG +I ++ + KNK+ S G+ +Q+L
Sbjct: 181 DADALVFGTKILIRNLN-----ANASSTSQNKNKNSSKRGYILTEINLEQVLKGLNLNMN 235
Query: 217 --LEMCILSGCDYLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKA 274
++ CIL GCDY ++ G+G K A+ LI ++ S +K+I+++ + +P + F +A
Sbjct: 236 EFIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNSIEKIIENIDKNKYQIPSNFR--FVEA 293
Query: 275 VLTFQHQRVY----------DPKTEDIVHLSCISD------NIGNDLDFLAKGIAIGD-- 316
+F + +V +PK E++ + I D + N ++ L K +
Sbjct: 294 RDSFINPKVLSKEEIKIDWGEPKIEELKNF-LIKDYNFNEVRVTNYINRLLKARKVTTQR 352
Query: 317 -LDPFTQLPFQEVSDNSHLVVGQNSHLKN-FKPESERKKLDLP 357
LD F F + S +V + S +K KP+ + KK D P
Sbjct: 353 RLDNF----FTACTKKSTKLVNEESQIKKEVKPKRKGKKRDAP 391
>sp|Q9SXQ6|FEN11_ORYSJ Flap endonuclease 1-A OS=Oryza sativa subsp. japonica GN=FEN-1a
PE=2 SV=1
Length = 380
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 137/285 (48%), Gaps = 23/285 (8%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDTYSWLHKGALSCSRELCKGLP---- 51
MGI+GL LL P +KE + G +AVD +++ + R + L
Sbjct: 1 MGIKGLTKLLAD-NAPKAMKEQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAG 59
Query: 52 -TSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEG 110
+ H+ +R L G+KP+ +FDG +K ++ KR R++ E EG
Sbjct: 60 EVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKREDATKELTEAVEEG 119
Query: 111 NSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITE 170
+ A +F ++ V ++ E ++L+ V + AP EA+A+ L ++ V AV +E
Sbjct: 120 DKDAIEKFSKRTVKVTKQHNEECKRLLRLMGVPVVEAPCEAEAECAALCINDMVYAVASE 179
Query: 171 DSDLIPFGCSRII-FKMDKFGQGV---EFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCD 226
D D + FG R + MD + + EF+ + + + +L+ F +++CILSGCD
Sbjct: 180 DMDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVLEELELTMDQF-----IDLCILSGCD 234
Query: 227 YLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVP---PFYE 268
Y S+ G+G + A LI + S + +++++ +P P+ E
Sbjct: 235 YCDSIKGIGGQTALKLIRQHGSIESILENINKDRYQIPEDWPYQE 279
>sp|B8AW67|FEN11_ORYSI Flap endonuclease 1-A OS=Oryza sativa subsp. indica GN=FEN1a PE=3
SV=1
Length = 380
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 137/285 (48%), Gaps = 23/285 (8%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDTYSWLHKGALSCSRELCKGLP---- 51
MGI+GL LL P +KE + G +AVD +++ + R + L
Sbjct: 1 MGIKGLTKLLAD-NAPKAMKEQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAG 59
Query: 52 -TSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEG 110
+ H+ +R L G+KP+ +FDG +K ++ KR R++ E EG
Sbjct: 60 EVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKREDATKELTEAVEEG 119
Query: 111 NSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITE 170
+ A +F ++ V ++ E ++L+ V + AP EA+A+ L ++ V AV +E
Sbjct: 120 DKDAIEKFSKRTVKVTKQHNEECKRLLRLMGVPVVEAPCEAEAECAALCINDMVYAVASE 179
Query: 171 DSDLIPFGCSRII-FKMDKFGQGV---EFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCD 226
D D + FG R + MD + + EF+ + + + +L+ F +++CILSGCD
Sbjct: 180 DMDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVLEELELTMDQF-----IDLCILSGCD 234
Query: 227 YLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVP---PFYE 268
Y S+ G+G + A LI + S + +++++ +P P+ E
Sbjct: 235 YCDSIKGIGGQTALKLIRQHGSIESILENINKDRYQIPEDWPYQE 279
>sp|B7XHS8|FEN1_ENTBH Flap endonuclease 1 OS=Enterocytozoon bieneusi (strain H348)
GN=FEN1 PE=3 SV=1
Length = 358
Score = 97.8 bits (242), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 87/323 (26%), Positives = 149/323 (46%), Gaps = 18/323 (5%)
Query: 1 MGIQGLLPLLKSI----MIPIHIKELEGCCVAVDTYSWLHKGALSCSRE---LCKGLPTS 53
MGI+ L L+K+ + +K G +A+D +++ ++ E L G T+
Sbjct: 1 MGIKRLSKLIKTYCSEGVQNRELKYYSGYKIAIDASMCIYQFLVAVRAEGQSLSWGDSTT 60
Query: 54 RHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSS 113
HI +R G+ P+ +FDG KI + KR + R++ A+ + + +
Sbjct: 61 SHISGIFYRSIRWIENGIIPVFVFDGIPPEEKIHEFEKRTKRRQDINAKLQDAIEQQDQV 120
Query: 114 ASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSD 173
++ + V + S E + L+ N+ Y++AP EA+A +L SK V+AV TED D
Sbjct: 121 LVSKYDRMNVKMEKSHIEECQKTLRLLNIPYVIAPSEAEAYCAWLCKSKFVDAVATEDMD 180
Query: 174 LIPFGCSRIIFKMDKFGQGVEFQCSMLQKN--KDLSFGGFTKQMLLEMCILSGCDYLQSL 231
+ FG + + F + + + + N K L FT + +++CIL GCDY ++
Sbjct: 181 SLCFGSPLL---LRNFNTALSQKLPVEEYNLHKILEGLQFTMEQFVDLCILLGCDYSATI 237
Query: 232 PGMGLKRAHALISKFKSYDKVI------KHLKYSTVSVPPFYEESFGKAVLTFQHQRVYD 285
G+G+KRA I K+KS D +I KY F + T ++ +
Sbjct: 238 RGVGMKRAFEYIKKYKSIDNLIGIVDFPDDFKYKEARTIFFTLGTDTSNNFTNENPINTN 297
Query: 286 PKTEDIVHLSCISDNIGNDLDFL 308
T D++ + S NI +DFL
Sbjct: 298 IATWDLIAVDSASINIEAVIDFL 320
>sp|Q2NFD4|FEN_METST Flap endonuclease 1 OS=Methanosphaera stadtmanae (strain DSM 3091)
GN=fen PE=3 SV=1
Length = 328
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 125/248 (50%), Gaps = 10/248 (4%)
Query: 16 PIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGLP-------TSRHIDYCMHRVNLLRH 68
PI +KELEG + VD + ++K LS R+ G P + H++ M + + L
Sbjct: 13 PIEMKELEGKILTVDASNVIYK-FLSSMRQ-TDGTPLRDLNGHITSHLNGIMFQTSTLIE 70
Query: 69 YGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQKAVDISPS 128
+KP+ +FDG +K E + +R +KE+ + +E + G+ A+ ++ + ++
Sbjct: 71 KDIKPVYVFDGKAPDLKKETQEERINIKKESEKKYLEAKEVGDVVAARKYAARTTHLNKE 130
Query: 129 IAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSRIIFKMDK 188
I ++L + Y+ A E +AQ +++ AV+++D D + FG +R+I + K
Sbjct: 131 IIKSSKKLLDLMGIPYVQARTEGEAQASYMVSQNDAWAVVSQDYDCLQFGATRMIRNL-K 189
Query: 189 FGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAHALISKFKS 248
+ ++ K L T++ L+++ +L G D+ + + G+G K+ LI K+ +
Sbjct: 190 LSKSNSKNLELISLEKTLKELNLTREQLVDVAMLVGTDFNKGVYGIGAKKGIKLIHKYGT 249
Query: 249 YDKVIKHL 256
+K ++ L
Sbjct: 250 LEKALESL 257
>sp|A8B672|FEN1_GIAIC Flap endonuclease 1 OS=Giardia intestinalis (strain ATCC 50803 / WB
clone C6) GN=FEN1 PE=3 SV=1
Length = 361
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 141/300 (47%), Gaps = 22/300 (7%)
Query: 1 MGIQGLLPLLKSIM-IPIHIKELEGCC---VAVDTYSWLHKGALSCSRELCKGLPTSR-- 54
MGI+GL L++ + + + ++ C +A+D L++ + + L S
Sbjct: 1 MGIRGLAKLIEEVAPAAVSKRLIQHYCNKVIAIDASVMLYQFITTITSGDGTALANSSGE 60
Query: 55 ---HIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGN 111
H+ + +V L G+KPI +FDG K + KR ++R+ + E EGN
Sbjct: 61 VTSHLVGLLAKVIRLAEAGIKPIFVFDGKPPEDKQGELEKRRQAREAAELEQQKAEEEGN 120
Query: 112 SSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITED 171
+ + ++ V ++ + ++L + Y+VA EA+AQ +A + E V + D
Sbjct: 121 LERAKQLSRRTVKVTQQHCKQAERLLDTLGIPYVVAAGEAEAQCVAMAKERVCEGVASSD 180
Query: 172 SDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSL 231
D++ FG +I + QG + + + N L GF+ L++CIL GCDY SL
Sbjct: 181 LDVLAFGSPCLIRNL---AQGGDREIVEINLNTVLKELGFSYDEFLDLCILCGCDYANSL 237
Query: 232 PGMGLKRAHALISKFKSYDKVIK----HLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPK 287
G+G K A+ LI K +S ++V+ L ++ P + +A F++ V DPK
Sbjct: 238 EGIGPKTAYKLIVKHRSIEEVLAADQGKLAEKALNWP------YVRARELFKNPAVIDPK 291
>sp|A5KAL1|FEN1_PLAVS Flap endonuclease 1 OS=Plasmodium vivax (strain Salvador I) GN=FEN1
PE=3 SV=1
Length = 623
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 142/315 (45%), Gaps = 34/315 (10%)
Query: 1 MGIQGLLPLLK----SIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKG------L 50
MGI+GL + + + I I+ L G VA+D L++ ++ G
Sbjct: 1 MGIKGLTKFIADAAPNAIKEIKIENLMGRVVAIDASMSLYQFIIAIRDSEQYGNLTNESG 60
Query: 51 PTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEG 110
T+ HI M R L G+KPI +FDG +K + KR R++ + + EG
Sbjct: 61 ETTSHISGLMSRSIKLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEEG 120
Query: 111 NSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITE 170
N + + V ++ E ++L + + AP EA++Q FL A TE
Sbjct: 121 NLEEIKKQSGRTVRVTRKQNEEAKKLLTLMGIPVVEAPCEAESQCAFLTKYNLAHATATE 180
Query: 171 DSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFT------KQML-------- 216
D+D + FG +I ++ + KNK+ S G+ +Q+L
Sbjct: 181 DADALVFGTKILIRNLN-----ANASSANQNKNKNSSKRGYILTEINLEQVLKGLNLSMN 235
Query: 217 --LEMCILSGCDYLQSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKA 274
++ CIL GCDY ++ G+G K A+ LI ++ S +K+I+++ + VP + F +A
Sbjct: 236 EFIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNSIEKIIENIDKNKYQVPSNFR--FVEA 293
Query: 275 VLTFQHQRVYDPKTE 289
+F + +V PK E
Sbjct: 294 RDSFINPKVL-PKEE 307
>sp|Q5XIP6|FEN1_RAT Flap endonuclease 1 OS=Rattus norvegicus GN=Fen1 PE=2 SV=1
Length = 380
Score = 96.7 bits (239), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 141/303 (46%), Gaps = 19/303 (6%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE-----GCCVAVDT----YSWL---HKGALSCSRELCK 48
MGIQGL L+ + P I+E + G VA+D Y +L +G E +
Sbjct: 1 MGIQGLAKLIADVA-PSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGE 59
Query: 49 GLPTSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECES 108
T+ H+ +R + G+KP+ IFDG +K + KR+ R E + + +
Sbjct: 60 ---TTSHLMGMFYRTIRMMENGIKPVYIFDGKPPQLKSGELAKRSERRAEAEKQLQQAQE 116
Query: 109 EGNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVI 168
G +F ++ V ++ E +L + Y+ AP EA+A LA + +V A
Sbjct: 117 AGAEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAA 176
Query: 169 TEDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYL 228
TED D + FG S ++ + + + ++ L G ++ +++CIL G DY
Sbjct: 177 TEDMDCLTFG-SPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYC 235
Query: 229 QSLPGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVYDPKT 288
+S+ G+G KRA LI K KS +++++ L S VP + +A F V DP++
Sbjct: 236 ESVRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHK--EARQLFLEPEVLDPES 293
Query: 289 EDI 291
++
Sbjct: 294 VEL 296
>sp|D3BN56|FEN1_POLPA Flap endonuclease 1 OS=Polysphondylium pallidum GN=repG PE=3 SV=1
Length = 388
Score = 96.7 bits (239), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 132/280 (47%), Gaps = 14/280 (5%)
Query: 1 MGIQGLLPLLK----SIMIPIHIKELEGCCVAVDTYSWLHKGALSCSRELCKGL-----P 51
MGI+ L L++ S + +K G VA+D + +++ ++ + E+ L
Sbjct: 1 MGIKNLTSLIEENAPSAIKSNDLKSYSGRIVAIDASTSMYQFLIAINTEMGAALMNANGE 60
Query: 52 TSRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGN 111
T+ H+ +R L G+KPI +FDG +K + KR RKE + E GN
Sbjct: 61 TTSHLQGMFYRTIKLMTRGIKPIYVFDGKAPVLKSGELAKRYARRKEAEQQLEEANEVGN 120
Query: 112 SSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITED 171
S +F ++ + S E ++L+ V + AP EA+AQ L + A +ED
Sbjct: 121 SEDVQKFQKRTISASRKQNEECKKLLELMGVPIVQAPCEAEAQCAELCKGGKAWATGSED 180
Query: 172 SDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSL 231
D + G + I+ + F + + ++ K L T +++CIL GCDY ++
Sbjct: 181 MDSLTLGTT-ILLRRLTFSEARKLPIMEIELEKVLDGLDLTHDQFVDLCILLGCDYCDTI 239
Query: 232 PGMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESF 271
G+G K++ +I+K K+ VI+++ + +P ESF
Sbjct: 240 KGIGPKKSFDMITKHKNIQTVIQNIDRTKNPIP----ESF 275
>sp|A8XL25|FEN1_CAEBR Flap endonuclease 1 OS=Caenorhabditis briggsae GN=crn-1 PE=3 SV=1
Length = 382
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/322 (25%), Positives = 143/322 (44%), Gaps = 21/322 (6%)
Query: 1 MGIQGLLPLLK----SIMIPIHIKELEGCCVAVDTYSWLHKGALSC----SRELCKGLPT 52
MGI+GL ++ S + IK G VA+D L++ ++ S+ + T
Sbjct: 1 MGIKGLSQVIADHAPSAIKVQEIKAFFGRKVAIDASMCLYQFLIAIRQDGSQMQSEDGET 60
Query: 53 SRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNS 112
+ H+ +R + G+KP+ +FDG MK + KR R E E + +G++
Sbjct: 61 TSHLMGMFYRTIRMIDNGIKPVYVFDGKPPDMKSGELEKRTERRAEAEKALTEAKEKGDA 120
Query: 113 SASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDS 172
+ +F ++ V ++ E+ Q+L + + AP EA+AQ L + +V TED
Sbjct: 121 KEAEKFERRLVKVTKQQNEEVKQLLGLMGIPVVEAPCEAEAQCANLVKAGKVYGTATEDM 180
Query: 173 DLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLP 232
D + FG S ++ + + + + L TK +++CIL GCDY ++
Sbjct: 181 DALTFG-SCVLLRHLLAPEAKKIPIKEFHLARVLEEMQLTKDQFIDLCILLGCDYCGTIR 239
Query: 233 GMGLKRAHALISKFKSYDKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVY-------- 284
G+G K+A LI + K+ + V++++ + PP + + +A F V
Sbjct: 240 GIGPKKAVELIKQHKNIETVLENIDQT--KYPPPADWPYKRARELFHEPEVMKCDEVELT 297
Query: 285 --DPKTEDIVHLSCISDNIGND 304
DP E IV C N D
Sbjct: 298 WKDPDVEGIVKFMCGEKNFSED 319
>sp|D0MY34|FEN1_PHYIT Flap endonuclease 1 OS=Phytophthora infestans (strain T30-4)
GN=FEN1 PE=3 SV=1
Length = 389
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 134/283 (47%), Gaps = 22/283 (7%)
Query: 1 MGIQGLLPLLKSIMIPIHIKELE------GCCVAVDTYSWLHKGALSCSRELCKGLPT-- 52
MGI+GL+ LL+ P IKE+E G VA+D L++ ++ R G P+
Sbjct: 1 MGIKGLMKLLQE-EAPSCIKEVEKMSALAGHAVAIDASMALYQFLIAI-RSADGGGPSQA 58
Query: 53 --------SRHIDYCMHRVNLLRHYGVKPILIFDGGLLPMKIEQENKRARSRKENLARAI 104
+ H+ R + G+KP+ +FDG MK + KR+ R+E
Sbjct: 59 LTNADGEVTSHLQGMFSRTIRMMENGLKPVYVFDGKPPVMKSGELAKRSDRRQEAQKALE 118
Query: 105 ECESEGNSSASYEFYQKAVDISPSIAHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQV 164
E +GN+ F ++ V +P + ++L+ V +I AP EA+A LA +V
Sbjct: 119 EATEKGNAEDIDRFNKRLVRATPQHNEDCKELLRLMGVPHITAPCEAEASCAALAKGGRV 178
Query: 165 EAVITEDSDLIPFGCSRIIFKMDKFGQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSG 224
A TED D + FG ++++ + ++ + L T + +++CIL G
Sbjct: 179 YAAGTEDMDALTFGVP-VLYRRLTVSPAKKIPILEIRLERALQELEMTHEQFVDLCILCG 237
Query: 225 CDYLQSLPGMGLKRAHALISKFKSYD---KVIKHLKYSTVSVP 264
CDY S+ G+G K+A+A I + KS + +V++ K V +P
Sbjct: 238 CDYCDSIRGVGPKKAYAGIKEHKSIENFLEVLQKNKSKGVVIP 280
>sp|A8QCH0|FEN1_BRUMA Flap endonuclease 1 OS=Brugia malayi GN=FEN1 PE=3 SV=1
Length = 378
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 141/305 (46%), Gaps = 20/305 (6%)
Query: 17 IHIKELEGCC---VAVDTYSWLHKGALSC----SRELCKGLPTSRHIDYCMHRVNLLRHY 69
I +KE +G VAVD L++ ++ S+ + T+ H+ +R +
Sbjct: 18 IRLKEFKGYFGRKVAVDASMCLYQFLIAVRQDGSQLQTESGETTSHLLGMFYRTIRMIDN 77
Query: 70 GVKPILIFDGGLLPMKIEQENKRARSRKENLARAIECESEGNSSASYEFYQKAVDISPSI 129
G+KP+ +FDG MK + KR R E + + G+ ++ +F ++ V ++
Sbjct: 78 GIKPVYVFDGKPPQMKTSELEKRTERRTEAEKQRNDAVELGDETSVNKFEKRLVKVTKEQ 137
Query: 130 AHELIQVLKQQNVSYIVAPYEADAQMTFLAVSKQVEAVITEDSDLIPFGCSRIIFKMDKF 189
+ E +++ + + AP EA+AQ LA + +V A ++ED D + FG S I+ +
Sbjct: 138 SEEAKRLVTLMGIPVLDAPCEAEAQCAALAKAGKVFATVSEDMDALTFG-SPILLRQMIA 196
Query: 190 GQGVEFQCSMLQKNKDLSFGGFTKQMLLEMCILSGCDYLQSLPGMGLKRAHALISKFKSY 249
+ + + N+ L G +++CIL GCDY+ ++ G+G K+A LI K++
Sbjct: 197 SEAKKLPVKEMNLNQVLKDFGMNMGQFVDLCILLGCDYVSTIRGIGPKKAFELIKKYECI 256
Query: 250 DKVIKHLKYSTVSVPPFYEESFGKAVLTFQHQRVY----------DPKTEDIVHLSCISD 299
+ V++ + + +P ++ + +A F V +P E IV C+
Sbjct: 257 ENVLETINQTKYPIPQDWQ--YKEARRLFLEPDVMNCENLELVWKEPDVEGIVQFLCVEK 314
Query: 300 NIGND 304
+ D
Sbjct: 315 SFNED 319
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 246,862,589
Number of Sequences: 539616
Number of extensions: 10565286
Number of successful extensions: 27190
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 26671
Number of HSP's gapped (non-prelim): 298
length of query: 672
length of database: 191,569,459
effective HSP length: 124
effective length of query: 548
effective length of database: 124,657,075
effective search space: 68312077100
effective search space used: 68312077100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)