BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005870
(672 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 1031 bits (2666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/654 (77%), Positives = 550/654 (84%)
Query: 8 LEAVLKETVDLENIPIEEVFENLRCSREGLSSQAAEERLSIFGYNXXXXXXXXXXXXXXX 67
LE + ETVDLE IPIEEVF+ L+CSREGL++Q E+R+ IFG N
Sbjct: 4 LEDIKNETVDLEKIPIEEVFQQLKCSREGLTTQEGEDRIQIFGPNKLEEKKESKLLKFLG 63
Query: 68 XMWNPLSWVMEXXXXXXXXXXNGGGKPPDWQDFVGIITLLVINSTISFIEEXXXXXXXXX 127
MWNPLSWVME NG G+PPDWQDFVGII LLVINSTISFIEE
Sbjct: 64 FMWNPLSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTISFIEENNAGNAAAA 123
Query: 128 XXXXXXPKGKVLRDGRWNEQDASILVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTG 187
PK KVLRDG+W+EQ+A+ILVPGDI+SIKLGDIIPADARLLEGDPLK+DQSALTG
Sbjct: 124 LMAGLAPKTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALTG 183
Query: 188 ESLPVTKGPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKVLTAI 247
ESLPVTK PG V+SGSTCKQGEIEAVVIATGVHTFFGKAAHLVD+TNQVGHFQKVLTAI
Sbjct: 184 ESLPVTKHPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAI 243
Query: 248 GNFCICSIAVGMIVEIIVMYPIQDREYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHR 307
GNFCICSIA+GM++EIIVMYPIQ R+YR GIDNLLVLLIGGIPIAMPTVLSVTMAIGSHR
Sbjct: 244 GNFCICSIAIGMVIEIIVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHR 303
Query: 308 LSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFTKGVDADTVVLMAA 367
LSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKL+VDKNL+EVF KGV+ D V+L AA
Sbjct: 304 LSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCKGVEKDQVLLFAA 363
Query: 368 QASRTENQDAIDAAIVGMLADPKEARAGIQEVHFLPFNPTDKRTALTYIDNAGKMHRVSK 427
ASR ENQDAIDAA+VGMLADPKEARAGI+EVHFLPFNP DKRTALTYID +G HRVSK
Sbjct: 364 MASRVENQDAIDAAMVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDGSGNWHRVSK 423
Query: 428 GAPEQILNLAHNKSDIERRVHAVIDKFAERGLRSLAVAYQEVPEGRKDSPGGPWQFMGLM 487
GAPEQIL LA +D+ ++V ++IDK+AERGLRSLAVA Q VPE K+SPG PW+F+GL+
Sbjct: 424 GAPEQILELAKASNDLSKKVLSIIDKYAERGLRSLAVARQVVPEKTKESPGAPWEFVGLL 483
Query: 488 PLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKD 547
PLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLG KD
Sbjct: 484 PLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGTHKD 543
Query: 548 ESIAALPIDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKXXXXX 607
++A++P++ELIEKADGFAGVFPEHKYEIVK+LQ RKHI GMTGDGVNDAPALKK
Sbjct: 544 ANLASIPVEELIEKADGFAGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPALKKADIGI 603
Query: 608 XXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIV 661
VLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIV
Sbjct: 604 AVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIV 657
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 227/644 (35%), Positives = 340/644 (52%), Gaps = 41/644 (6%)
Query: 33 SREGLSSQAAEERLSIFGYNXXXXXXXXXXXXXXXXMWNPLSWVMEXXXXXXXXXXNGGG 92
+R GL+S+ +R +G N P+ +VME
Sbjct: 84 TRVGLTSEEVVQRRRKYGLNQMKEEKENHFLKFLGFFVGPIQFVMEGAAVLAAGLE---- 139
Query: 93 KPPDWQDFVGIITLLVINSTISFIEEXXXXXXXXXXXXXXXPKGKVLRDGRWNEQDASIL 152
DW DF I LL++N+ + F++E K VLRDG E +A +
Sbjct: 140 ---DWVDFGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLALKAVVLRDGTLKEIEAPEV 196
Query: 153 VPGDIISIKLGDIIPADARLLEGDP-LKIDQSALTGESLPVTKGPGDGVYSGSTCKQGEI 211
VPGDI+ ++ G IIPAD R++ D L++DQSALTGESL V K GD V++ S K+GE
Sbjct: 197 VPGDILQVEEGTIIPADGRIVTDDAFLQVDQSALTGESLAVDKHKGDQVFASSAVKRGEA 256
Query: 212 EAVVIATGVHTFFGKAAHLVDT-TNQVGHFQKVLTAIGNFCICSIAVGMIVEIIVMYPIQ 270
V+ ATG +TF G+AA LV+ + GHF +VL IG + + +++ + +
Sbjct: 257 FVVITATGDNTFVGRAAALVNAASGGSGHFTEVLNGIGTILLILVIFTLLIVWVSSF--- 313
Query: 271 DREYRPG-----IDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMA 325
YR ++ L + I G+P+ +P V++ TMA+G+ L+++ AI ++++AIE +A
Sbjct: 314 ---YRSNPIVQILEFTLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIESLA 370
Query: 326 GMDVLCSDKTGTLTLNKLTVDKNLIEVFTKGVDADTVVLMAAQASRTENQ--DAIDAAIV 383
G+++LCSDKTGTLT NKL++ GVD + ++L A A+ + + DAID A +
Sbjct: 371 GVEILCSDKTGTLTKNKLSLHDPYT---VAGVDPEDLMLTACLAASRKKKGIDAIDKAFL 427
Query: 384 GMLADPKEARAGIQE---VHFLPFNPTDKRTALTYIDNAGKMHRVSKGAPEQILNLAHNK 440
L A++ + + + F PF+P K+ G+ KGAP +L
Sbjct: 428 KSLKYYPRAKSVLSKYKVLQFHPFDPVSKKVVAVVESPQGERITCVKGAPLFVLKTVEED 487
Query: 441 SDIERRVHAV----IDKFAERGLRSLAVAYQEVPEGRKDSPGGPWQFMGLMPLFDPPRHD 496
I V + +FA RG RSL VA RK G W+ +G+MP DPPRHD
Sbjct: 488 HPIPEEVDQAYKNKVAEFATRGFRSLGVA-------RKRGEGS-WEILGIMPCMDPPRHD 539
Query: 497 SAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDESIAALPID 556
+ +T+ A LG+++KM+TGD + I +ET R+LG+GTN+Y + L + + +
Sbjct: 540 TYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLGTNIYNAERLGLGGGGD-MPGSEVY 598
Query: 557 ELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXX 616
+ +E ADGFA VFP+HKY +V+ LQ R ++ MTGDGVNDAP+LKK
Sbjct: 599 DFVEAADGFAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIAVEGSSDAA 658
Query: 617 XXXXXXVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRI 660
V PGL II A+ TSR IF RM Y +Y ++++I +
Sbjct: 659 RSAADIVFLAPGLGAIIDALKTSRQIFHRMYAYVVYRIALSIHL 702
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 155 bits (391), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 158/670 (23%), Positives = 276/670 (41%), Gaps = 127/670 (18%)
Query: 100 FVGII--TLLVINSTISFIEEXXXXXXXXXXXXXXXPKGKVLRDGRWNEQDASILVPGDI 157
++G++ +++I S+ +E + V+R+G +A +V GD+
Sbjct: 106 YLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDL 165
Query: 158 ISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPG----------DGVYSGSTCK 207
+ +K GD IPAD R++ + K+D S+LTGES P T+ P + + + C
Sbjct: 166 VEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCV 225
Query: 208 QGEIEAVVIATGVHTFFGKAAHLVD--------TTNQVGHFQKVLTAIGNFCICSIAVGM 259
+G +V+ TG T G+ A L ++ HF ++T + AV +
Sbjct: 226 EGTARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITGV--------AVFL 277
Query: 260 IVEIIVMYPIQDREYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMT 319
V ++ I + + + L+ +++ +P + ++V + + + R++++ + K +
Sbjct: 278 GVSFFILSLILEYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLE 337
Query: 320 AIEEMAGMDVLCSDKTGTLTLNKLTV-----DKNLIEVFT----KGVDADTV-------- 362
A+E + +CSDKTGTLT N++TV D + E T GV D
Sbjct: 338 AVETLGSTSTICSDKTGTLTQNRMTVAHMWSDNQIHEADTTENQSGVSFDKTSATWLALS 397
Query: 363 ---------VLMAAQAS-----RTENQDAIDAAIVGML----ADPKEARAGIQEVHFLPF 404
V A Q + R DA ++A++ + KE R ++ +PF
Sbjct: 398 RIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIVEIPF 457
Query: 405 NPTDKRTALTYIDNAGKMHR---VSKGAPEQILN-----LAHNK--------SDIERRVH 448
N T+K + + R V KGAPE+IL+ L H K D + +
Sbjct: 458 NSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDEELKDAFQNAY 517
Query: 449 AVIDKFAER--GLRSLAVAYQEVPEGRK------DSPGGPWQFMGLMPLFDPPRHDSAET 500
+ ER G L + ++ PEG + + P F+GL+ + DPPR +
Sbjct: 518 LELGGLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDA 577
Query: 501 IRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDESIAA---LPIDE 557
+ + + G+ V M+TGD K + +G+ + G + E IAA +P+ +
Sbjct: 578 VGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISE--------GNETVEDIAARLNIPVSQ 629
Query: 558 L-------------------IEKADG---------FAGVFPEHKYEIVKRLQARKHICGM 589
+ E+ D FA P+ K IV+ Q + I +
Sbjct: 630 VNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAV 689
Query: 590 TGDGVNDAPALKKXXX-XXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMKN 648
TGDGVND+PA KK +L + + I++ V R IF +K
Sbjct: 690 TGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKK 749
Query: 649 YTIYAVSITI 658
Y ++ I
Sbjct: 750 SIAYTLTSNI 759
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 157/670 (23%), Positives = 273/670 (40%), Gaps = 113/670 (16%)
Query: 93 KPPDWQDFVGII--TLLVINSTISFIEEXXXXXXXXXXXXXXXPKGKVLRDGRWNEQDAS 150
+P + ++G++ T++++ S+ +E + V+RDG + +A
Sbjct: 129 EPANDNLYLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQQALVIRDGEKSTINAE 188
Query: 151 ILVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPG----------DGV 200
+V GD++ +K GD IPAD R++ K+D S+LTGES P T+ P +
Sbjct: 189 FVVAGDLVEVKGGDRIPADLRIISAHGCKVDNSSLTGESEPQTRSPEFSSENPLETRNIA 248
Query: 201 YSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQ-KVLTAIGNFCICSIAVGM 259
+ + C +G VV+ TG T G+ A L +VG + I +AV +
Sbjct: 249 FFSTNCVEGTARGVVVYTGDRTVMGRIATLASGL-EVGRTPIAIEIEHFIHIITGVAVFL 307
Query: 260 IVEIIVMYPIQDREYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMT 319
V ++ I + + L+ +++ +P + ++V + + + R++++ + K +
Sbjct: 308 GVSFFILSLILGYSWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLE 367
Query: 320 AIEEMAGMDVLCSDKTGTLTLNKLTV-----DKNLIEVFTK------------------- 355
A+E + +CSDKTGTLT N++TV D + E T
Sbjct: 368 AVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADTTENQSGAAFDKTSATWSALS 427
Query: 356 --GVDADTVVLMAAQAS-----RTENQDAIDAAIVGMLADPKEARAGIQE----VHFLPF 404
+ V A Q + R+ DA ++A++ + + G+++ + +PF
Sbjct: 428 RIAALCNRAVFQAGQDNVPILKRSVAGDASESALLKCIELCCGSVQGMRDRNPKIVEIPF 487
Query: 405 NPTDKRTALTYIDNAGKMHR---VSKGAPEQILNLAHN----------KSDIERRVHAVI 451
N T+K + + R V KGAPE+IL+ K D++
Sbjct: 488 NSTNKYQLSIHENEKSSESRYLLVMKGAPERILDRCSTILLNGAEEPLKEDMKEAFQNAY 547
Query: 452 DKFAERGLRSLAVAYQEVPEGR--------KDSPGGPWQ---FMGLMPLFDPPRHDSAET 500
+ G R L + +PE + D P P F+GLM + DPPR +
Sbjct: 548 LELGGLGERVLGFCHFALPEDKYNEGYPFDADEPNFPTTDLCFVGLMAMIDPPRAAVPDA 607
Query: 501 IRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDESIAA---LPIDE 557
+ + + G+ V M+TGD K + +G+ + G + E IAA +PI +
Sbjct: 608 VGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISE--------GNETIEDIAARLNIPIGQ 659
Query: 558 L-------------------IEKADG---------FAGVFPEHKYEIVKRLQARKHICGM 589
+ E D FA P+ K IV+ Q + I +
Sbjct: 660 VNPRDAKACVVHGSDLKDLSTEVLDDILHYHTEIVFARTSPQQKLIIVEGCQRQGAIVAV 719
Query: 590 TGDGVNDAPALKKXXX-XXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMKN 648
TGDGVND+PALKK +L + + I++ V R IF +K
Sbjct: 720 TGDGVNDSPALKKADIGVAMGISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKK 779
Query: 649 YTIYAVSITI 658
Y ++ I
Sbjct: 780 SIAYTLTSNI 789
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 152 bits (384), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 157/670 (23%), Positives = 275/670 (41%), Gaps = 127/670 (18%)
Query: 100 FVGII--TLLVINSTISFIEEXXXXXXXXXXXXXXXPKGKVLRDGRWNEQDASILVPGDI 157
++G++ +++I S+ +E + V+R+G +A +V GD+
Sbjct: 100 YLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDL 159
Query: 158 ISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPG----------DGVYSGSTCK 207
+ +K GD IPAD R++ + K+D S+LTGES P T+ P + + + C
Sbjct: 160 VEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCV 219
Query: 208 QGEIEAVVIATGVHTFFGKAAHLVD--------TTNQVGHFQKVLTAIGNFCICSIAVGM 259
+G +V+ TG T G+ A L ++ HF ++T + AV +
Sbjct: 220 EGTARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITGV--------AVFL 271
Query: 260 IVEIIVMYPIQDREYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMT 319
V ++ I + + + L+ +++ +P + ++V + + + R++++ + K +
Sbjct: 272 GVSFFILSLILEYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLE 331
Query: 320 AIEEMAGMDVLCSDKTGTLTLNKLTV-----DKNLIEVFT----KGVDADTV-------- 362
A+E + +CS KTGTLT N++TV D + E T GV D
Sbjct: 332 AVETLGSTSTICSXKTGTLTQNRMTVAHMWSDNQIHEADTTENQSGVSFDKTSATWLALS 391
Query: 363 ---------VLMAAQAS-----RTENQDAIDAAIVGML----ADPKEARAGIQEVHFLPF 404
V A Q + R DA ++A++ + KE R ++ +PF
Sbjct: 392 RIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIVEIPF 451
Query: 405 NPTDKRTALTYIDNAGKMHR---VSKGAPEQILN-----LAHNK--------SDIERRVH 448
N T+K + + R V KGAPE+IL+ L H K D + +
Sbjct: 452 NSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDEELKDAFQNAY 511
Query: 449 AVIDKFAER--GLRSLAVAYQEVPEGRK------DSPGGPWQFMGLMPLFDPPRHDSAET 500
+ ER G L + ++ PEG + + P F+GL+ + DPPR +
Sbjct: 512 LELGGLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDA 571
Query: 501 IRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDESIAA---LPIDE 557
+ + + G+ V M+TGD K + +G+ + G + E IAA +P+ +
Sbjct: 572 VGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISE--------GNETVEDIAARLNIPVSQ 623
Query: 558 L-------------------IEKADG---------FAGVFPEHKYEIVKRLQARKHICGM 589
+ E+ D FA P+ K IV+ Q + I +
Sbjct: 624 VNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAV 683
Query: 590 TGDGVNDAPALKKXXX-XXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMKN 648
TGDGVND+PA KK +L + + I++ V R IF +K
Sbjct: 684 TGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKK 743
Query: 649 YTIYAVSITI 658
Y ++ I
Sbjct: 744 SIAYTLTSNI 753
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 152 bits (384), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 155/667 (23%), Positives = 260/667 (38%), Gaps = 125/667 (18%)
Query: 101 VGIITLLVINSTISFIEEXXXXXXXXXXXXXXXPKGKVLRDGRWNEQDASILVPGDIISI 160
+ +I ++V+ + +E + V+RDG + +A LV GD++ +
Sbjct: 144 LALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVVGDLVEM 203
Query: 161 KLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGP----------GDGVYSGSTCKQGE 210
K GD +PAD R+L+ K+D S+LTGES P T+ P + + + C +G
Sbjct: 204 KGGDRVPADIRILQAQGRKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFSTMCLEGT 263
Query: 211 IEAVVIATGVHTFFGKAAHLVDTTN--------QVGHFQKVLTAIGNFCICSIAVGMIVE 262
+ +V+ TG T G+ A L ++ HF + I I A IV
Sbjct: 264 AQGLVVNTGDRTIIGRIASLASGVENEKTPIAIEIEHFVDI---IAGLAILFGATFFIVA 320
Query: 263 IIVMYPIQDREYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIE 322
+ + Y + + + +++ +P + ++V +++ + RL+ + + K + A+E
Sbjct: 321 MCIGY-----TFLRAMVFFMAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVE 375
Query: 323 EMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFTKGVDADT-------------------VV 363
+ V+CSDKTGTLT N++TV + D V+
Sbjct: 376 TLGSTSVICSDKTGTLTQNRMTVSHLWFDNHIHSADTTEDQSGQTFDQSSETWRALCRVL 435
Query: 364 LMAAQASRTENQDAIDAAIVGMLADPKEA----------------RAGIQEVHFLPFNPT 407
+ +A+ QDA+ ++ D E R +V +PFN T
Sbjct: 436 TLCNRAAFKSGQDAVPVPKRIVIGDASETALLKFSELTLGNAMGYRERFPKVCEIPFNST 495
Query: 408 DK--RTALTYIDNAGKMH-RVSKGAPEQILN-------------LAHNKSDIERRVHAVI 451
+K + T D H V KGAPE++L L + + + +
Sbjct: 496 NKFQLSIHTLEDPRDPRHVLVMKGAPERVLERCSSILIKGQELPLDEQWREAFQTAYLSL 555
Query: 452 DKFAER--GLRSLAVAYQEVPEGRK------DSPGGPWQFMGLMPLFDPPRHDSAETIRR 503
ER G L ++ ++ P G + P F GL+ + DPPR + + +
Sbjct: 556 GGLGERVLGFCQLYLSEKDYPPGYAFDVEAMNFPTSGLSFAGLVSMIDPPRATVPDAVLK 615
Query: 504 ALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDESIAA---LPID---- 556
G+ V M+TGD K +G+ + G + E IAA +P+D
Sbjct: 616 CRTAGIRVIMVTGDHPITAKAIAASVGIISE--------GSETVEDIAARLRVPVDQVNR 667
Query: 557 -------------------ELIEKADG-----FAGVFPEHKYEIVKRLQARKHICGMTGD 592
EL+E FA P+ K IV+ Q I +TGD
Sbjct: 668 KDARACVINGMQLKDMDPSELVEALRTHPEMVFARTSPQQKLVIVESCQRLGAIVAVTGD 727
Query: 593 GVNDAPALKKXXX-XXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMKNYTI 651
GVND+PALKK +L + + I++ V R IF +K
Sbjct: 728 GVNDSPALKKADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIA 787
Query: 652 YAVSITI 658
Y ++ I
Sbjct: 788 YTLTKNI 794
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 123/264 (46%), Gaps = 31/264 (11%)
Query: 427 KGAPEQILNLAHN----------KSDIERRVHAVIDKFA--ERGLRSLAVAYQEVPEGRK 474
KGAPE +++ + ++ ++ +VI ++ LR LA+A ++ P R+
Sbjct: 516 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 575
Query: 475 D----------SPGGPWQFMGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKE 524
+ F+G++ + DPPR + +I+ + G+ V MITGD
Sbjct: 576 EMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 635
Query: 525 TGRRLGM-GTNM-YPSSALLGQDKDESIAALPIDELIE---KADGFAGVFPEHKYEIVKR 579
RR+G+ G N A G++ D+ LP+ E E +A FA V P HK +IV+
Sbjct: 636 ICRRIGIFGENEEVADRAYTGREFDD----LPLAEQREACRRACCFARVEPSHKSKIVEY 691
Query: 580 LQARKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTS 639
LQ+ I MTGDGVNDAPALKK VL + S I++AV
Sbjct: 692 LQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEG 751
Query: 640 RAIFQRMKNYTIYAVSITIRIVVS 663
RAI+ MK + Y +S + VV
Sbjct: 752 RAIYNNMKQFIRYLISSNVGEVVC 775
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 134/277 (48%), Gaps = 31/277 (11%)
Query: 103 IITLLVINSTISFIEEXXXXXXXXXXXXXXXPKGKVLRDGRWNEQ--DASILVPGDIISI 160
I+ +L+ N+ + +E GKV R R + Q A +VPGDI+ +
Sbjct: 95 ILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEV 154
Query: 161 KLGDIIPADARLL--EGDPLKIDQSALTGESLPVTK-------------GPGDGVYSGST 205
+GD +PAD R+L + L++DQS LTGES+ V K + ++SG+
Sbjct: 155 AVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTN 214
Query: 206 CKQGEIEAVVIATGVHTFFGKAAHLVDTTNQ--------VGHFQKVLTAIGNFCICSIAV 257
G+ +V TGV T GK + T Q + F + L+ + + IC +AV
Sbjct: 215 IAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISL-IC-VAV 272
Query: 258 GMIVEIIVMYPIQDREYRPG----IDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGA 313
+I P+ + G + L + IP +P V++ +A+G+ R++++ A
Sbjct: 273 WLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNA 332
Query: 314 ITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLI 350
I + + ++E + V+CSDKTGTLT N+++V K I
Sbjct: 333 IVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI 369
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 123/264 (46%), Gaps = 31/264 (11%)
Query: 427 KGAPEQILNLAHN----------KSDIERRVHAVIDKFA--ERGLRSLAVAYQEVPEGRK 474
KGAPE +++ + ++ ++ +VI ++ LR LA+A ++ P R+
Sbjct: 515 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 574
Query: 475 D----------SPGGPWQFMGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKE 524
+ F+G++ + DPPR + +I+ + G+ V MITGD
Sbjct: 575 EMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 634
Query: 525 TGRRLGM-GTNM-YPSSALLGQDKDESIAALPIDELIE---KADGFAGVFPEHKYEIVKR 579
RR+G+ G N A G++ D+ LP+ E E +A FA V P HK +IV+
Sbjct: 635 ICRRIGIFGENEEVADRAYTGREFDD----LPLAEQREACRRACCFARVEPSHKSKIVEY 690
Query: 580 LQARKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTS 639
LQ+ I MTGDGVNDAPALKK VL + S I++AV
Sbjct: 691 LQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEG 750
Query: 640 RAIFQRMKNYTIYAVSITIRIVVS 663
RAI+ MK + Y +S + VV
Sbjct: 751 RAIYNNMKQFIRYLISSNVGEVVC 774
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 134/277 (48%), Gaps = 31/277 (11%)
Query: 103 IITLLVINSTISFIEEXXXXXXXXXXXXXXXPKGKVLRDGRWNEQ--DASILVPGDIISI 160
I+ +L+ N+ + +E GKV R R + Q A +VPGDI+ +
Sbjct: 94 ILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEV 153
Query: 161 KLGDIIPADARLL--EGDPLKIDQSALTGESLPVTK-------------GPGDGVYSGST 205
+GD +PAD R+L + L++DQS LTGES+ V K + ++SG+
Sbjct: 154 AVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTN 213
Query: 206 CKQGEIEAVVIATGVHTFFGKAAHLVDTTNQ--------VGHFQKVLTAIGNFCICSIAV 257
G+ +V TGV T GK + T Q + F + L+ + + IC +AV
Sbjct: 214 IAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISL-IC-VAV 271
Query: 258 GMIVEIIVMYPIQDREYRPG----IDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGA 313
+I P+ + G + L + IP +P V++ +A+G+ R++++ A
Sbjct: 272 WLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNA 331
Query: 314 ITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLI 350
I + + ++E + V+CSDKTGTLT N+++V K I
Sbjct: 332 IVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI 368
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 123/264 (46%), Gaps = 31/264 (11%)
Query: 427 KGAPEQILNLAHN----------KSDIERRVHAVIDKFA--ERGLRSLAVAYQEVPEGRK 474
KGAPE +++ + ++ ++ +VI ++ LR LA+A ++ P R+
Sbjct: 515 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 574
Query: 475 D----------SPGGPWQFMGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKE 524
+ F+G++ + DPPR + +I+ + G+ V MITGD
Sbjct: 575 EMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 634
Query: 525 TGRRLGM-GTNM-YPSSALLGQDKDESIAALPIDELIE---KADGFAGVFPEHKYEIVKR 579
RR+G+ G N A G++ D+ LP+ E E +A FA V P HK +IV+
Sbjct: 635 ICRRIGIFGENEEVADRAYTGREFDD----LPLAEQREACRRACCFARVEPSHKSKIVEY 690
Query: 580 LQARKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTS 639
LQ+ I MTGDGVNDAPALKK VL + S I++AV
Sbjct: 691 LQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEG 750
Query: 640 RAIFQRMKNYTIYAVSITIRIVVS 663
RAI+ MK + Y +S + VV
Sbjct: 751 RAIYNNMKQFIRYLISSNVGEVVC 774
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 133/277 (48%), Gaps = 31/277 (11%)
Query: 103 IITLLVINSTISFIEEXXXXXXXXXXXXXXXPKGKVLRDGRWNEQ--DASILVPGDIISI 160
I+ +L+ N+ + +E GKV R R + Q A +VPGDI+ +
Sbjct: 94 ILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEV 153
Query: 161 KLGDIIPADARLL--EGDPLKIDQSALTGESLPVTK-------------GPGDGVYSGST 205
+GD +PAD R+L + L++DQS LTGES+ V K + ++SG+
Sbjct: 154 AVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTN 213
Query: 206 CKQGEIEAVVIATGVHTFFGKAAHLVDTTNQ--------VGHFQKVLTAIGNFCICSIAV 257
G+ +V TGV T GK + T Q + F + L+ + + IC +AV
Sbjct: 214 IAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISL-IC-VAV 271
Query: 258 GMIVEIIVMYPIQDREYRPG----IDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGA 313
+I P+ + G + L + IP +P V++ +A+G+ R++++ A
Sbjct: 272 WLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNA 331
Query: 314 ITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLI 350
I + + ++E + V+CS KTGTLT N+++V K I
Sbjct: 332 IVRSLPSVETLGCTSVICSXKTGTLTTNQMSVCKMFI 368
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 123/264 (46%), Gaps = 31/264 (11%)
Query: 427 KGAPEQILNLAHN----------KSDIERRVHAVIDKFA--ERGLRSLAVAYQEVPEGRK 474
KGAPE +++ + ++ ++ +VI ++ LR LA+A ++ P R+
Sbjct: 514 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 573
Query: 475 D----------SPGGPWQFMGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKE 524
+ F+G++ + DPPR + +I+ + G+ V MITGD
Sbjct: 574 EMVLDDSTKFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 633
Query: 525 TGRRLGM-GTNM-YPSSALLGQDKDESIAALPIDELIE---KADGFAGVFPEHKYEIVKR 579
RR+G+ G N A G++ D+ LP+ E E +A FA V P HK +IV+
Sbjct: 634 ICRRIGIFGENEDVADRAYTGREFDD----LPLAEQREACRRACCFARVEPTHKSKIVEY 689
Query: 580 LQARKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTS 639
LQ+ I MTGDGVNDAPALKK VL + S I++AV
Sbjct: 690 LQSFDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEG 749
Query: 640 RAIFQRMKNYTIYAVSITIRIVVS 663
RAI+ MK + Y +S + VV
Sbjct: 750 RAIYNNMKQFIRYLISSNVGEVVC 773
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 139/291 (47%), Gaps = 34/291 (11%)
Query: 103 IITLLVINSTISFIEEXXXXXXXXXXXXXXXPKGKVLRDGRWNEQ--DASILVPGDIISI 160
I+ +L+ N+ + +E GKV R R + Q A +VPGDI+ +
Sbjct: 94 ILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEV 153
Query: 161 KLGDIIPADARLL--EGDPLKIDQSALTGESLPVTK-------------GPGDGVYSGST 205
+GD +PAD R+L + L++DQS LTGES+ V K + ++SG+
Sbjct: 154 AVGDKVPADIRILTIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTN 213
Query: 206 CKQGEIEAVVIATGVHTFFGKAAHLVDTTNQ--------VGHFQKVLTAIGNFCICSIAV 257
G+ +V TGV T GK + T Q + F + L+ + + IC +AV
Sbjct: 214 IAAGKAIGIVATTGVGTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISL-IC-VAV 271
Query: 258 GMIVEIIVMYPIQDREYRPG----IDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGA 313
+I P+ + G + L + IP +P V++ +A+G+ R++++ A
Sbjct: 272 WLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNA 331
Query: 314 ITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFTKGVDADTVVL 364
I + + ++E + V+CSDKTGTLT N+++V K I +D D +L
Sbjct: 332 IVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI---IDRIDGDLCLL 379
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 123/532 (23%), Positives = 205/532 (38%), Gaps = 95/532 (17%)
Query: 138 VLRDGRWNEQDASILVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPG 197
V+RDG+ + GDI+ ++ G+ IP D ++EG+ +D+S ++GE +PV K G
Sbjct: 137 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLKSKG 195
Query: 198 DGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLV-DTTNQVGHFQKVLTAIGNFCICSIA 256
D V+ + G ++ G T + LV D Q++ + + I ++
Sbjct: 196 DEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVL 255
Query: 257 VGMIVEIIVMYPIQDREYRPGIDNLLVLLIGGIP----IAMPTVLSVTMAIGSHRLSQQG 312
+ I I Y I L+ +L+ P +A PT L+V M G+ + G
Sbjct: 256 LVAISAFIYWYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGA----ELG 311
Query: 313 AITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFTKGVDADTVVLMAAQASRT 372
+ K A+E + + DKTGTLT K + ++ D ++ +AA A R
Sbjct: 312 ILIKNADALEVAEKVTAVIFDKTGTLTKGK----PEVTDLVPLNGDERELLRLAAIAER- 366
Query: 373 ENQDAIDAAIVGMLADPKEARAGIQEVHFLPFNPTDKRTALTYIDNAGKMHRVSKGAPEQ 432
++ I AIV + AL + G+ +V A E
Sbjct: 367 RSEHPIAEAIV--------------------------KKALEHGIELGEPEKVEVIAGEG 400
Query: 433 ILN---LAHNKSDIE-------RRVHAVIDKFAERGLRSLAVAYQEVPEGRKDSPGGPWQ 482
++ L NK +E V ++K ++ VA GR +
Sbjct: 401 VVADGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARN----GRVE------- 449
Query: 483 FMGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALL 542
G++ + D + + ++ +G+ V MITGD + R L +
Sbjct: 450 --GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL----------- 496
Query: 543 GQDKDESIAALPIDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKK 602
D +I A V P K E VK+LQA K + GDG+NDAPAL +
Sbjct: 497 -------------DLVI------AEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQ 536
Query: 603 XXXXXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAV 654
VL L +++A+ SR ++K +A+
Sbjct: 537 ADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWAL 588
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 123/532 (23%), Positives = 205/532 (38%), Gaps = 95/532 (17%)
Query: 138 VLRDGRWNEQDASILVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPG 197
V+RDG+ + GDI+ ++ G+ IP D ++EG+ +D+S ++GE +PV K G
Sbjct: 215 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLKSKG 273
Query: 198 DGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLV-DTTNQVGHFQKVLTAIGNFCICSIA 256
D V+ + G ++ G T + LV D Q++ + + I ++
Sbjct: 274 DEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVL 333
Query: 257 VGMIVEIIVMYPIQDREYRPGIDNLLVLLIGGIP----IAMPTVLSVTMAIGSHRLSQQG 312
+ I I Y I L+ +L+ P +A PT L+V M G+ + G
Sbjct: 334 LVAISAFIYWYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGA----ELG 389
Query: 313 AITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFTKGVDADTVVLMAAQASRT 372
+ K A+E + + DKTGTLT K + ++ D ++ +AA A R
Sbjct: 390 ILIKNADALEVAEKVTAVIFDKTGTLTKGK----PEVTDLVPLNGDERELLRLAAIAER- 444
Query: 373 ENQDAIDAAIVGMLADPKEARAGIQEVHFLPFNPTDKRTALTYIDNAGKMHRVSKGAPEQ 432
++ I AIV + AL + G+ +V A E
Sbjct: 445 RSEHPIAEAIV--------------------------KKALEHGIELGEPEKVEVIAGEG 478
Query: 433 ILN---LAHNKSDIE-------RRVHAVIDKFAERGLRSLAVAYQEVPEGRKDSPGGPWQ 482
++ L NK +E V ++K ++ VA GR +
Sbjct: 479 VVADGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARN----GRVE------- 527
Query: 483 FMGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALL 542
G++ + D + + ++ +G+ V MITGD + R L +
Sbjct: 528 --GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL----------- 574
Query: 543 GQDKDESIAALPIDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKK 602
D +I A V P K E VK+LQA K + GDG+NDAPAL +
Sbjct: 575 -------------DLVI------AEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQ 614
Query: 603 XXXXXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAV 654
VL L +++A+ SR ++K +A+
Sbjct: 615 ADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWAL 666
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 93/207 (44%), Gaps = 7/207 (3%)
Query: 137 KVLRDGRWNEQDASILVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGP 196
++ DG E + GD++ ++ G+ IP D + EG +D+S +TGE +PV K
Sbjct: 229 RIKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSF-VDESMVTGEPIPVAKEA 287
Query: 197 GDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLV-DTTNQVGHFQKVLTAIGNFCICSI 255
V + + G + G T + +V D Q++ + + + ++
Sbjct: 288 SAKVIGATINQTGSFVMKALHVGSDTMLARIVQMVSDAQRSRAPIQRLADTVSGWFVPAV 347
Query: 256 AVGMIVEIIV---MYPIQDREYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQG 312
+ ++ IV + P Y G+ + +LI P A+ +++ +G + +Q G
Sbjct: 348 ILVAVLSFIVWALLGPQPALSY--GLIAAVSVLIIACPCALGLATPMSIMVGVGKGAQSG 405
Query: 313 AITKRMTAIEEMAGMDVLCSDKTGTLT 339
+ K A+E M ++ L DKTGTLT
Sbjct: 406 VLIKNAEALERMEKVNTLVVDKTGTLT 432
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 48/119 (40%), Gaps = 30/119 (25%)
Query: 484 MGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLG 543
+ L+ + DP + + ETI G+ + M+TGD + LG
Sbjct: 546 VALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLG------------- 592
Query: 544 QDKDESIAALPIDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKK 602
I+K A + PE K IV L+ + I M GDGVNDAPAL K
Sbjct: 593 ---------------IKKV--VAEIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPALAK 634
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 50/116 (43%), Gaps = 31/116 (26%)
Query: 485 GLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQ 544
G++ L D R +S E I + +G+ M+TGD + K LG+
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLD------------ 184
Query: 545 DKDESIAALPIDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPAL 600
D FA V P K E VK +Q +K++ M GDGVNDAPAL
Sbjct: 185 ------------------DYFAEVLPHEKAEKVKEVQ-QKYVTAMVGDGVNDAPAL 221
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 50/116 (43%), Gaps = 31/116 (26%)
Query: 485 GLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQ 544
G++ L D R +S E I + +G+ M+TGD + K LG+
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLD------------ 184
Query: 545 DKDESIAALPIDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPAL 600
D FA V P K E VK +Q +K++ M GDGVNDAPAL
Sbjct: 185 ------------------DYFAEVLPHEKAEKVKEVQ-QKYVTAMVGDGVNDAPAL 221
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 148 DASILVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDGVYSGSTCK 207
D ++ GDII + G P D R++EG + +D+S +TGE++PV K PG V +GS +
Sbjct: 38 DVELVQRGDIIKVVPGGKFPVDGRVIEGHSM-VDESLITGEAMPVAKKPGSTVIAGSINQ 96
Query: 208 QGEIEAVVIATGVHTFFGKAAHLVD 232
G + G T + LV+
Sbjct: 97 NGSLLICATHVGADTTLSQIVKLVE 121
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 138 VLRDGRWNEQDASILVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPG 197
V+RDG+ + GDI+ ++ G+ IP D ++EG+ +D+S ++GE +PV K G
Sbjct: 16 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLKSKG 74
Query: 198 DGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVD 232
D V+ + G ++ G T + LV+
Sbjct: 75 DEVFGATINNTGVLKIRATRVGGETLLAQIVKLVE 109
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 62/163 (38%), Gaps = 31/163 (19%)
Query: 485 GLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQ 544
G++ + D + + ++ +G+ V MITGD + R L +
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------- 202
Query: 545 DKDESIAALPIDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKXX 604
+L+ A V P K E VK+LQA K + GDG+NDAPAL +
Sbjct: 203 ------------DLV-----IAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQAD 244
Query: 605 XXXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMK 647
VL L +++A+ SR ++K
Sbjct: 245 LGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 62/163 (38%), Gaps = 31/163 (19%)
Query: 485 GLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQ 544
G++ + D + + ++ +G+ V MITGD + R L +
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------- 202
Query: 545 DKDESIAALPIDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKXX 604
+L+ A V P K E VK+LQA K + GDG+NDAPAL +
Sbjct: 203 ------------DLV-----IAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQAD 244
Query: 605 XXXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMK 647
VL L +++A+ SR ++K
Sbjct: 245 LGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 565 FAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPAL 600
A V P K E VK+LQA K + GDG+NDAPAL
Sbjct: 65 IAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPAL 99
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 565 FAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPAL 600
A V P K E VK+LQA K + GDG+NDAPAL
Sbjct: 186 IAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPAL 220
>pdb|3GWI|A Chain A, Crystal Structure Of Mg-Atpase Nucleotide Binding Domain
Length = 170
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 397 QEVHFLPFNPTDKRTALTYIDNAGKMHRVSKGAPEQILNLA----HNKS-----DIE-RR 446
Q++ +PF+ +R ++ +N V KGA ++ILN+ HN DI R+
Sbjct: 57 QKIDEIPFDFERRRMSVVVAENTEHHQLVCKGALQEILNVCSQVRHNGEIVPLDDIMLRK 116
Query: 447 VHAVIDKFAERGLRSLAVAYQEVP 470
+ V D +GLR +AVA + +P
Sbjct: 117 IKRVTDTLNRQGLRVVAVATKYLP 140
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 541 LLGQDKDESIAALPIDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVN 595
+L DK++ + L + I++ ++ + PE K I+++L+ + M GDGVN
Sbjct: 157 ILSGDKEDKVKELSKELNIQEY--YSNLSPEDKVRIIEKLKQNGNKVLMIGDGVN 209
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 541 LLGQDKDESIAALPIDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVN 595
+L DK++ + L + I++ ++ + PE K I+++L+ + M GDGVN
Sbjct: 157 ILSGDKEDKVKELSKELNIQEY--YSNLSPEDKVRIIEKLKQNGNKVLMIGDGVN 209
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 541 LLGQDKDESIAALPIDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVN 595
+L DK++ + L + I++ ++ + PE K I+++L+ + M GDGVN
Sbjct: 157 ILSGDKEDKVKELSKELNIQEY--YSNLSPEDKVRIIEKLKQNGNKVLMIGDGVN 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,919,363
Number of Sequences: 62578
Number of extensions: 706699
Number of successful extensions: 1662
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1559
Number of HSP's gapped (non-prelim): 62
length of query: 672
length of database: 14,973,337
effective HSP length: 105
effective length of query: 567
effective length of database: 8,402,647
effective search space: 4764300849
effective search space used: 4764300849
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)