BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005872
(672 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W2Z|A Chain A, Psao And Xenon
pdb|1W2Z|B Chain B, Psao And Xenon
pdb|1W2Z|C Chain C, Psao And Xenon
pdb|1W2Z|D Chain D, Psao And Xenon
Length = 649
Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/646 (53%), Positives = 471/646 (72%), Gaps = 7/646 (1%)
Query: 23 PSHQYHPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETTT 82
P H HPLD LT EF +++IV YP S ++L F Y+GL++P K V+ + + T
Sbjct: 3 PLHVQHPLDPLTKEEFLAVQTIVQNKYP-ISNNRLAFHYIGLDDPEKDHVLRYETHPTLV 61
Query: 83 NPPRQAFVIARIDHQTHELIVDLSLQEIASKRIYSGYGYPMFTFEDQENADKLAFTYPPF 142
+ PR+ FV+A I+ QTHE++++L ++ I S I++GYG+P+ + ++Q A KL YPPF
Sbjct: 62 SIPRKIFVVAIINSQTHEILINLRIRSIVSDNIHNGYGFPILSVDEQSLAIKLPLKYPPF 121
Query: 143 VASIRRRGLKLEEVVCESFSVGWYGAEEEEGKNKKRIVKVMCYYMNGTVNLFMRPIEGIS 202
+ S+++RGL L E+VC SF++GW+G E+ R V++ C+ TVN+++RPI GI+
Sbjct: 122 IDSVKKRGLNLSEIVCSSFTMGWFGEEK-----NVRTVRLDCFMKESTVNIYVRPITGIT 176
Query: 203 MTVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKPPFRQSLKAITVVQPDGPSFTIDGH 262
+ DLD MKI+ + DR VP A+ TE++ SK PPF ++T QP GP F I+GH
Sbjct: 177 IVADLDLMKIVEYHDRDIEAVPTAENTEYQVSKQSPPFGPKQHSLTSHQPQGPGFQINGH 236
Query: 263 MIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRR 322
+ WA+W+FH+ FDVRAG++ISLASIYDLEK +SRRVLYKG++SE+FVPY D TEE+ +
Sbjct: 237 SVSWANWKFHIGFDVRAGIVISLASIYDLEKHKSRRVLYKGYISELFVPYQDPTEEFYFK 296
Query: 323 TFFDAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGDIMW 382
TFFD+GE+G+GL +++L P RDCPP+A F+D Y +G P + A C+FE+Y G+IMW
Sbjct: 297 TFFDSGEFGFGLSTVSLIPNRDCPPHAQFIDTYVHSANGTPILLKNAICVFEQY-GNIMW 355
Query: 383 RHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEFKQSGSIKVTVGLTGMVQVRG 442
RHTE IP +++ E R +V+L+VRT+ T GN D V DWEFK SGSIK ++ L+G+++++G
Sbjct: 356 RHTENGIPNESIEESRTEVNLIVRTIVTVGNXDNVIDWEFKASGSIKPSIALSGILEIKG 415
Query: 443 TTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRTTRVNDRR 502
T HKD ++ED++G LV+ NSI I+HDHF Y LD D+DG NSF ++ L+T R+ D
Sbjct: 416 TNIKHKDEIKEDLHGKLVSANSIGIYHDHFYIYYLDFDIDGTHNSFEKTSLKTVRIKDGS 475
Query: 503 SSRKSYWTVDSKTAKTESDARIKLGSEPAELLFVNPNKKTKMGNLIGYRLIPEGVTGALL 562
S RKSYWT +++TAKTESDA+I +G PAEL+ VNPN KT +GN +GYRLIP LL
Sbjct: 476 SKRKSYWTTETQTAKTESDAKITIGLAPAELVVVNPNIKTAVGNEVGYRLIPAIPAHPLL 535
Query: 563 SSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDDTLAVWSNRNRSIENKDIVL 622
+ DD+PQIR AFTNYNVWVTAYN++EKWAGGLY D S GDDTLAVW+ +NR I NKDIV+
Sbjct: 536 TEDDYPQIRGAFTNYNVWVTAYNRTEKWAGGLYVDHSRGDDTLAVWTKQNREIVNKDIVM 595
Query: 623 WYTLGFHHVPYQEDFPVMPTLNGGFELRPSNFFESNPVLKVKQPKE 668
W+ +G HHVP QEDFP+MP L+ FELRP+NFFE NPVLK P++
Sbjct: 596 WHVVGIHHVPAQEDFPIMPLLSTSFELRPTNFFERNPVLKTLSPRD 641
>pdb|1KSI|A Chain A, Crystal Structure Of A Eukaryotic (Pea Seedling)
Copper-Containing Amine Oxidase At 2.2a Resolution
pdb|1KSI|B Chain B, Crystal Structure Of A Eukaryotic (Pea Seedling)
Copper-Containing Amine Oxidase At 2.2a Resolution
Length = 642
Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/641 (53%), Positives = 469/641 (73%), Gaps = 7/641 (1%)
Query: 28 HPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETTTNPPRQ 87
HPLD LT EF +++IV YP S ++L F Y+GL++P K V+ + + T + PR+
Sbjct: 3 HPLDPLTKEEFLAVQTIVQNKYP-ISNNRLAFHYIGLDDPEKDHVLRYETHPTLVSIPRK 61
Query: 88 AFVIARIDHQTHELIVDLSLQEIASKRIYSGYGYPMFTFEDQENADKLAFTYPPFVASIR 147
FV+A I+ QTHE++++L ++ I S I++GYG+P+ + ++Q A KL YPPF+ S++
Sbjct: 62 IFVVAIINSQTHEILINLRIRSIVSDNIHNGYGFPILSVDEQSLAIKLPLKYPPFIDSVK 121
Query: 148 RRGLKLEEVVCESFSVGWYGAEEEEGKNKKRIVKVMCYYMNGTVNLFMRPIEGISMTVDL 207
+RGL L E+VC SF++GW+G E+ R V++ C+ TVN+++RPI GI++ DL
Sbjct: 122 KRGLNLSEIVCSSFTMGWFGEEK-----NVRTVRLDCFMKESTVNIYVRPITGITIVADL 176
Query: 208 DEMKIIGFQDRVTVPVPKADETEFRESKIKPPFRQSLKAITVVQPDGPSFTIDGHMIRWA 267
D MKI+ + DR VP A+ TE++ SK PPF ++T QP GP F I+GH + WA
Sbjct: 177 DLMKIVEYHDRDIEAVPTAENTEYQVSKQSPPFGPKQHSLTSHQPQGPGFQINGHSVSWA 236
Query: 268 DWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFFDA 327
+W+FH+ FDVRAG++ISLASIYDLEK +SRRVLYKG++SE+FVPY D TEE+ +TFFD+
Sbjct: 237 NWKFHIGFDVRAGIVISLASIYDLEKHKSRRVLYKGYISELFVPYQDPTEEFYFKTFFDS 296
Query: 328 GEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGDIMWRHTEA 387
GE+G+GL +++L P RDCPP+A F+D Y +G P + A C+FE+Y G+IMWRHTE
Sbjct: 297 GEFGFGLSTVSLIPNRDCPPHAQFIDTYVHSANGTPILLKNAICVFEQY-GNIMWRHTEN 355
Query: 388 TIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEFKQSGSIKVTVGLTGMVQVRGTTYTH 447
IP +++ E R +V+L+VRT+ T GN D V DWEFK SGSIK ++ L+G+++++GT H
Sbjct: 356 GIPNESIEESRTEVNLIVRTIVTVGNXDNVIDWEFKASGSIKPSIALSGILEIKGTNIKH 415
Query: 448 KDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRTTRVNDRRSSRKS 507
KD ++ED++G LV+ NSI I+HDHF Y LD D+DG NSF ++ L+T R+ D S RKS
Sbjct: 416 KDEIKEDLHGKLVSANSIGIYHDHFYIYYLDFDIDGTHNSFEKTSLKTVRIKDGSSKRKS 475
Query: 508 YWTVDSKTAKTESDARIKLGSEPAELLFVNPNKKTKMGNLIGYRLIPEGVTGALLSSDDH 567
YWT +++TAKTESDA+I +G PAEL+ VNPN KT +GN +GYRLIP LL+ DD+
Sbjct: 476 YWTTETQTAKTESDAKITIGLAPAELVVVNPNIKTAVGNEVGYRLIPAIPAHPLLTEDDY 535
Query: 568 PQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDDTLAVWSNRNRSIENKDIVLWYTLG 627
PQIR AFTNYNVWVTAYN++EKWAGGLY D S GDDTLAVW+ +NR I NKDIV+W+ +G
Sbjct: 536 PQIRGAFTNYNVWVTAYNRTEKWAGGLYVDHSRGDDTLAVWTKQNREIVNKDIVMWHVVG 595
Query: 628 FHHVPYQEDFPVMPTLNGGFELRPSNFFESNPVLKVKQPKE 668
HHVP QEDFP+MP L+ FELRP+NFFE NPVLK P++
Sbjct: 596 IHHVPAQEDFPIMPLLSTSFELRPTNFFERNPVLKTLSPRD 636
>pdb|2WGQ|A Chain A, Zinc Substituted E Coli Copper Amine Oxidase, A Model For
The Precursor For 2,4,5-Trihydroxyphenylalaninequinone
Formation
pdb|2WGQ|B Chain B, Zinc Substituted E Coli Copper Amine Oxidase, A Model For
The Precursor For 2,4,5-Trihydroxyphenylalaninequinone
Formation
Length = 727
Score = 332 bits (850), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 209/646 (32%), Positives = 331/646 (51%), Gaps = 31/646 (4%)
Query: 28 HPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETTTNPPRQ 87
HPL++LT E Q IV + + F + L P K+ V ++ + PR+
Sbjct: 94 HPLNALTADEIKQAVEIVKASADFKPNTR--FTEISLLPPDKEAVWAFALENKPVDQPRK 151
Query: 88 AFVIARIDHQTHELIVDLSLQEIAS-KRIYSGYGYPMFTFEDQENADKLAFTYPPFVASI 146
A VI E +VDL ++ S + I +G M +D + + F A++
Sbjct: 152 ADVIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHG--MVLLDDFASVQNIINNSEEFAAAV 209
Query: 147 RRRGL-KLEEVVCESFSVGWYGAEEEEGKNKKRIVKVMCYYMNGTVNLFMRPIEGISMTV 205
++RG+ ++V+ +VG++ ++ K R++KV+ Y G N + PIE + V
Sbjct: 210 KKRGITDAKKVITTPLTVGYFDGKDGL-KQDARLLKVISYLDVGDGNYWAHPIENLVAVV 268
Query: 206 DLDEMKIIGFQDRVTVPVPKADETEFRESKIKPPFRQSLKAITVVQPDGPSFTIDGHMIR 265
DL++ KI+ ++ VPVP ++ P ++K + +++P+G ++TI G MI
Sbjct: 269 DLEQKKIVKIEEGPVVPVPMTARPFDGRDRVAP----AVKPMQIIEPEGKNYTITGDMIH 324
Query: 266 WADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFF 325
W +W+FHLS + R G +IS + D R+V+Y+G + M VPY D W + +
Sbjct: 325 WRNWDFHLSMNSRVGPMISTVTYND--NGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYL 382
Query: 326 DAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGDIMWRHT 385
D+G+YG G + + +D P NAV ++ + G+P +IP+A +FERYAG ++H
Sbjct: 383 DSGDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGP-EYKHQ 441
Query: 386 EATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEFKQSGSIKVTVGLTGMVQVRGTTY 445
E P + E R+ LVVR +ST GNYDY+ DW F ++G+I + G TG+ V+G
Sbjct: 442 EMGQPNVST-ERRE---LVVRWISTVGNYDYIFDWIFHENGTIGIDAGATGIEAVKGVKA 497
Query: 446 --THKDHMEEDV-YGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRTTRVNDRR 502
H + ++D YGTL+ N + H H +RLDLDVDG+ NS V + N
Sbjct: 498 KTMHDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMD-PVVKPNTAG 556
Query: 503 SSRKSYWTVDSKTAKTESDARIKLGSEPAEL-LFVNPNKKTKMGNLIGYRLIPEG----- 556
R S V+ E DA K +P + L NPNK+ +MGN + Y++IP
Sbjct: 557 GPRTSTMQVNQYNIGNEQDAAQKF--DPGTIRLLSNPNKENRMGNPVSYQIIPYAGGTHP 614
Query: 557 -VTGALLSSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDDTLAVWSNRNRSI 615
GA + D+ R +F + +WVT Y+ E++ G Y ++S D L +S N S+
Sbjct: 615 VAKGAQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESL 674
Query: 616 ENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGFELRPSNFFESNPVL 661
+N D V+W T G HV E++P+MPT L+P NFF+ P L
Sbjct: 675 DNTDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTL 720
>pdb|1OAC|A Chain A, Crystal Structure Of A Quinoenzyme: Copper Amine Oxidase
Of Escherichia Coli At 2 Angstroems Resolution
pdb|1OAC|B Chain B, Crystal Structure Of A Quinoenzyme: Copper Amine Oxidase
Of Escherichia Coli At 2 Angstroems Resolution
pdb|1SPU|A Chain A, Structure Of Oxidoreductase
pdb|1SPU|B Chain B, Structure Of Oxidoreductase
pdb|1D6U|A Chain A, Crystal Structure Of E. Coli Amine Oxidase Anaerobically
Reduced With Beta-Phenylethylamine
pdb|1D6U|B Chain B, Crystal Structure Of E. Coli Amine Oxidase Anaerobically
Reduced With Beta-Phenylethylamine
pdb|1D6Y|A Chain A, Crystal Structure Of E. Coli Copper-Containing Amine
Oxidase Anaerobically Reduced With Beta-Phenylethylamine
And Complexed With Nitric Oxide.
pdb|1D6Y|B Chain B, Crystal Structure Of E. Coli Copper-Containing Amine
Oxidase Anaerobically Reduced With Beta-Phenylethylamine
And Complexed With Nitric Oxide.
pdb|1D6Z|A Chain A, Crystal Structure Of The Aerobically Freeze Trapped
Rate-determining Catalytic Intermediate Of E. Coli
Copper-containing Amine Oxidase.
pdb|1D6Z|B Chain B, Crystal Structure Of The Aerobically Freeze Trapped
Rate-determining Catalytic Intermediate Of E. Coli
Copper-containing Amine Oxidase.
pdb|1DYU|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase: X-Ray Crystallographic
Studies With Mutational Variants.
pdb|1DYU|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase: X-Ray Crystallographic
Studies With Mutational Variants.
pdb|1LVN|A Chain A, Crystal Structure Of E. Coli Amine Oxidase Complexed With
Tranylcypromine
pdb|1LVN|B Chain B, Crystal Structure Of E. Coli Amine Oxidase Complexed With
Tranylcypromine
pdb|2W0Q|A Chain A, E. Coli Copper Amine Oxidase In Complex With Xenon
pdb|2W0Q|B Chain B, E. Coli Copper Amine Oxidase In Complex With Xenon
pdb|2WO0|A Chain A, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WO0|B Chain B, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOF|A Chain A, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOF|B Chain B, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOH|A Chain A, Strontium Soaked E. Coli Copper Amine Oxidase
pdb|2WOH|B Chain B, Strontium Soaked E. Coli Copper Amine Oxidase
Length = 727
Score = 328 bits (842), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 208/646 (32%), Positives = 330/646 (51%), Gaps = 31/646 (4%)
Query: 28 HPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETTTNPPRQ 87
HPL++LT E Q IV + + F + L P K+ V ++ + PR+
Sbjct: 94 HPLNALTADEIKQAVEIVKASADFKPNTR--FTEISLLPPDKEAVWAFALENKPVDQPRK 151
Query: 88 AFVIARIDHQTHELIVDLSLQEIAS-KRIYSGYGYPMFTFEDQENADKLAFTYPPFVASI 146
A VI E +VDL ++ S + I +G M +D + + F A++
Sbjct: 152 ADVIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHG--MVLLDDFASVQNIINNSEEFAAAV 209
Query: 147 RRRGL-KLEEVVCESFSVGWYGAEEEEGKNKKRIVKVMCYYMNGTVNLFMRPIEGISMTV 205
++RG+ ++V+ +VG++ ++ K R++KV+ Y G N + PIE + V
Sbjct: 210 KKRGITDAKKVITTPLTVGYFDGKDGL-KQDARLLKVISYLDVGDGNYWAHPIENLVAVV 268
Query: 206 DLDEMKIIGFQDRVTVPVPKADETEFRESKIKPPFRQSLKAITVVQPDGPSFTIDGHMIR 265
DL++ KI+ ++ VPVP ++ P ++K + +++P+G ++TI G MI
Sbjct: 269 DLEQKKIVKIEEGPVVPVPMTARPFDGRDRVAP----AVKPMQIIEPEGKNYTITGDMIH 324
Query: 266 WADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFF 325
W +W+FHLS + R G +IS + D R+V+Y+G + M VPY D W + +
Sbjct: 325 WRNWDFHLSMNSRVGPMISTVTYND--NGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYL 382
Query: 326 DAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGDIMWRHT 385
D+G+YG G + + +D P NAV ++ + G+P +IP+A +FERYAG ++H
Sbjct: 383 DSGDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGP-EYKHQ 441
Query: 386 EATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEFKQSGSIKVTVGLTGMVQVRGTTY 445
E P + E R+ LVVR +ST GN DY+ DW F ++G+I + G TG+ V+G
Sbjct: 442 EMGQPNVST-ERRE---LVVRWISTVGNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKA 497
Query: 446 --THKDHMEEDV-YGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRTTRVNDRR 502
H + ++D YGTL+ N + H H +RLDLDVDG+ NS V + N
Sbjct: 498 KTMHDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMD-PVVKPNTAG 556
Query: 503 SSRKSYWTVDSKTAKTESDARIKLGSEPAEL-LFVNPNKKTKMGNLIGYRLIPEG----- 556
R S V+ E DA K +P + L NPNK+ +MGN + Y++IP
Sbjct: 557 GPRTSTMQVNQYNIGNEQDAAQKF--DPGTIRLLSNPNKENRMGNPVSYQIIPYAGGTHP 614
Query: 557 -VTGALLSSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDDTLAVWSNRNRSI 615
GA + D+ R +F + +WVT Y+ E++ G Y ++S D L +S N S+
Sbjct: 615 VAKGAQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESL 674
Query: 616 ENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGFELRPSNFFESNPVL 661
+N D V+W T G HV E++P+MPT L+P NFF+ P L
Sbjct: 675 DNTDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTL 720
>pdb|1JRQ|A Chain A, X-Ray Structure Analysis Of The Role Of The Conserved
Tyrosine-369 In Active Site Of E. Coli Amine Oxidase
pdb|1JRQ|B Chain B, X-Ray Structure Analysis Of The Role Of The Conserved
Tyrosine-369 In Active Site Of E. Coli Amine Oxidase
Length = 727
Score = 327 bits (839), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 207/646 (32%), Positives = 330/646 (51%), Gaps = 31/646 (4%)
Query: 28 HPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETTTNPPRQ 87
HPL++LT E Q IV + + F + L P K+ V ++ + PR+
Sbjct: 94 HPLNALTADEIKQAVEIVKASADFKPNTR--FTEISLLPPDKEAVWAFALENKPVDQPRK 151
Query: 88 AFVIARIDHQTHELIVDLSLQEIAS-KRIYSGYGYPMFTFEDQENADKLAFTYPPFVASI 146
A VI E +VDL ++ S + I +G M +D + + F A++
Sbjct: 152 ADVIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHG--MVLLDDFASVQNIINNSEEFAAAV 209
Query: 147 RRRGL-KLEEVVCESFSVGWYGAEEEEGKNKKRIVKVMCYYMNGTVNLFMRPIEGISMTV 205
++RG+ ++V+ +VG++ ++ K R++KV+ Y G N + PIE + V
Sbjct: 210 KKRGITDAKKVITTPLTVGYFDGKDGL-KQDARLLKVISYLDVGDGNYWAHPIENLVAVV 268
Query: 206 DLDEMKIIGFQDRVTVPVPKADETEFRESKIKPPFRQSLKAITVVQPDGPSFTIDGHMIR 265
DL++ KI+ ++ VPVP ++ P ++K + +++P+G ++TI G MI
Sbjct: 269 DLEQKKIVKIEEGPVVPVPMTARPFDGRDRVAP----AVKPMQIIEPEGKNYTITGDMIH 324
Query: 266 WADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFF 325
W +W+FHLS + R G +IS + D R+V+Y+G + M VP+ D W + +
Sbjct: 325 WRNWDFHLSMNSRVGPMISTVTYND--NGTKRKVMYEGSLGGMIVPFGDPDIGWYFKAYL 382
Query: 326 DAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGDIMWRHT 385
D+G+YG G + + +D P NAV ++ + G+P +IP+A +FERYAG ++H
Sbjct: 383 DSGDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGP-EYKHQ 441
Query: 386 EATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEFKQSGSIKVTVGLTGMVQVRGTTY 445
E P + E R+ LVVR +ST GN DY+ DW F ++G+I + G TG+ V+G
Sbjct: 442 EMGQPNVST-ERRE---LVVRWISTVGNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKA 497
Query: 446 --THKDHMEEDV-YGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRTTRVNDRR 502
H + ++D YGTL+ N + H H +RLDLDVDG+ NS V + N
Sbjct: 498 KTMHDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMD-PVVKPNTAG 556
Query: 503 SSRKSYWTVDSKTAKTESDARIKLGSEPAEL-LFVNPNKKTKMGNLIGYRLIPEG----- 556
R S V+ E DA K +P + L NPNK+ +MGN + Y++IP
Sbjct: 557 GPRTSTMQVNQYNIGNEQDAAQKF--DPGTIRLLSNPNKENRMGNPVSYQIIPYAGGTHP 614
Query: 557 -VTGALLSSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDDTLAVWSNRNRSI 615
GA + D+ R +F + +WVT Y+ E++ G Y ++S D L +S N S+
Sbjct: 615 VAKGAQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESL 674
Query: 616 ENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGFELRPSNFFESNPVL 661
+N D V+W T G HV E++P+MPT L+P NFF+ P L
Sbjct: 675 DNTDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTL 720
>pdb|1QAL|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
pdb|1QAL|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
Length = 721
Score = 327 bits (837), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 207/646 (32%), Positives = 330/646 (51%), Gaps = 31/646 (4%)
Query: 28 HPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETTTNPPRQ 87
HPL++LT E Q IV + + F + L P K+ V ++ + PR+
Sbjct: 89 HPLNALTADEIKQAVEIVKASADFKPNTR--FTEISLLPPDKEAVWAFALENKPVDQPRK 146
Query: 88 AFVIARIDHQTHELIVDLSLQEIAS-KRIYSGYGYPMFTFEDQENADKLAFTYPPFVASI 146
A VI E +VDL ++ S + I +G M +D + + F A++
Sbjct: 147 ADVIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHG--MVLLDDFASVQNIINNSEEFAAAV 204
Query: 147 RRRGL-KLEEVVCESFSVGWYGAEEEEGKNKKRIVKVMCYYMNGTVNLFMRPIEGISMTV 205
++RG+ ++V+ +VG++ ++ K R++KV+ Y G N + PIE + V
Sbjct: 205 KKRGITDAKKVITTPLTVGYFDGKDGL-KQDARLLKVISYLDVGDGNYWAHPIENLVAVV 263
Query: 206 DLDEMKIIGFQDRVTVPVPKADETEFRESKIKPPFRQSLKAITVVQPDGPSFTIDGHMIR 265
DL++ KI+ ++ VPVP ++ P ++K + +++P+G ++TI G MI
Sbjct: 264 DLEQKKIVKIEEGPVVPVPMTARPFDGRDRVAP----AVKPMQIIEPEGKNYTITGDMIH 319
Query: 266 WADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFF 325
W +W+FHLS + R G +IS + D R+V+Y+G + M VPY D W + +
Sbjct: 320 WRNWDFHLSMNSRVGPMISTVTYND--NGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYL 377
Query: 326 DAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGDIMWRHT 385
++G+YG G + + +D P NAV ++ + G+P +IP+A +FERYAG ++H
Sbjct: 378 NSGDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGP-EYKHQ 436
Query: 386 EATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEFKQSGSIKVTVGLTGMVQVRGTTY 445
E P + E R+ LVVR +ST GN DY+ DW F ++G+I + G TG+ V+G
Sbjct: 437 EMGQPNVST-ERRE---LVVRWISTVGNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKA 492
Query: 446 --THKDHMEEDV-YGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRTTRVNDRR 502
H + ++D YGTL+ N + H H +RLDLDVDG+ NS V + N
Sbjct: 493 KTMHDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMD-PVVKPNTAG 551
Query: 503 SSRKSYWTVDSKTAKTESDARIKLGSEPAEL-LFVNPNKKTKMGNLIGYRLIPEG----- 556
R S V+ E DA K +P + L NPNK+ +MGN + Y++IP
Sbjct: 552 GPRTSTMQVNQYNIGNEQDAAQKF--DPGTIRLLSNPNKENRMGNPVSYQIIPYAGGTHP 609
Query: 557 -VTGALLSSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDDTLAVWSNRNRSI 615
GA + D+ R +F + +WVT Y+ E++ G Y ++S D L +S N S+
Sbjct: 610 VAKGAQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESL 669
Query: 616 ENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGFELRPSNFFESNPVL 661
+N D V+W T G HV E++P+MPT L+P NFF+ P L
Sbjct: 670 DNTDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTL 715
>pdb|1QAF|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
pdb|1QAF|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
Length = 721
Score = 327 bits (837), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 207/646 (32%), Positives = 330/646 (51%), Gaps = 31/646 (4%)
Query: 28 HPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETTTNPPRQ 87
HPL++LT E Q IV + + F + L P K+ V ++ + PR+
Sbjct: 89 HPLNALTADEIKQAVEIVKASADFKPNTR--FTEISLLPPDKEAVWAFALENKPVDQPRK 146
Query: 88 AFVIARIDHQTHELIVDLSLQEIAS-KRIYSGYGYPMFTFEDQENADKLAFTYPPFVASI 146
A VI E +VDL ++ S + I +G M +D + + F A++
Sbjct: 147 ADVIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHG--MVLLDDFASVQNIINNSEEFAAAV 204
Query: 147 RRRGL-KLEEVVCESFSVGWYGAEEEEGKNKKRIVKVMCYYMNGTVNLFMRPIEGISMTV 205
++RG+ ++V+ +VG++ ++ K R++KV+ Y G N + PIE + V
Sbjct: 205 KKRGITDAKKVITTPLTVGYFDGKDGL-KQDARLLKVISYLDVGDGNYWAHPIENLVAVV 263
Query: 206 DLDEMKIIGFQDRVTVPVPKADETEFRESKIKPPFRQSLKAITVVQPDGPSFTIDGHMIR 265
DL++ KI+ ++ VPVP ++ P ++K + +++P+G ++TI G MI
Sbjct: 264 DLEQKKIVKIEEGPVVPVPMTARPFDGRDRVAP----AVKPMQIIEPEGKNYTITGDMIH 319
Query: 266 WADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFF 325
W +W+FHLS + R G +IS + D R+V+Y+G + M VPY D W + +
Sbjct: 320 WRNWDFHLSMNSRVGPMISTVTYND--NGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYL 377
Query: 326 DAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGDIMWRHT 385
++G+YG G + + +D P NAV ++ + G+P +IP+A +FERYAG ++H
Sbjct: 378 ESGDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGP-EYKHQ 436
Query: 386 EATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEFKQSGSIKVTVGLTGMVQVRGTTY 445
E P + E R+ LVVR +ST GN DY+ DW F ++G+I + G TG+ V+G
Sbjct: 437 EMGQPNVST-ERRE---LVVRWISTVGNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKA 492
Query: 446 --THKDHMEEDV-YGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRTTRVNDRR 502
H + ++D YGTL+ N + H H +RLDLDVDG+ NS V + N
Sbjct: 493 KTMHDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMD-PVVKPNTAG 551
Query: 503 SSRKSYWTVDSKTAKTESDARIKLGSEPAEL-LFVNPNKKTKMGNLIGYRLIPEG----- 556
R S V+ E DA K +P + L NPNK+ +MGN + Y++IP
Sbjct: 552 GPRTSTMQVNQYNIGNEQDAAQKF--DPGTIRLLSNPNKENRMGNPVSYQIIPYAGGTHP 609
Query: 557 -VTGALLSSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDDTLAVWSNRNRSI 615
GA + D+ R +F + +WVT Y+ E++ G Y ++S D L +S N S+
Sbjct: 610 VAKGAQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESL 669
Query: 616 ENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGFELRPSNFFESNPVL 661
+N D V+W T G HV E++P+MPT L+P NFF+ P L
Sbjct: 670 DNTDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTL 715
>pdb|1QAK|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-ray Crystallographic
Studies With Mutational Variants
pdb|1QAK|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-ray Crystallographic
Studies With Mutational Variants
Length = 722
Score = 325 bits (834), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 207/646 (32%), Positives = 329/646 (50%), Gaps = 31/646 (4%)
Query: 28 HPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETTTNPPRQ 87
HPL++LT E Q IV + + F + L P K+ V ++ + PR+
Sbjct: 89 HPLNALTADEIKQAVEIVKASADFKPNTR--FTEISLLPPDKEAVWAFALENKPVDQPRK 146
Query: 88 AFVIARIDHQTHELIVDLSLQEIAS-KRIYSGYGYPMFTFEDQENADKLAFTYPPFVASI 146
A VI E +VDL ++ S + I +G M +D + + F A++
Sbjct: 147 ADVIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHG--MVLLDDFASVQNIINNSEEFAAAV 204
Query: 147 RRRGL-KLEEVVCESFSVGWYGAEEEEGKNKKRIVKVMCYYMNGTVNLFMRPIEGISMTV 205
++RG+ ++V+ +VG++ ++ K R++KV+ Y G N + PIE + V
Sbjct: 205 KKRGITDAKKVITTPLTVGYFDGKDGL-KQDARLLKVISYLDVGDGNYWAHPIENLVAVV 263
Query: 206 DLDEMKIIGFQDRVTVPVPKADETEFRESKIKPPFRQSLKAITVVQPDGPSFTIDGHMIR 265
DL++ KI+ ++ VPVP ++ P ++K + +++P+G ++TI G MI
Sbjct: 264 DLEQKKIVKIEEGPVVPVPMTARPFDGRDRVAP----AVKPMQIIEPEGKNYTITGDMIH 319
Query: 266 WADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFF 325
W +W+FHLS + R G +IS + D R+V+Y+G + M VPY D W + +
Sbjct: 320 WRNWDFHLSMNSRVGPMISTVTYND--NGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYL 377
Query: 326 DAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGDIMWRHT 385
+G+YG G + + +D P NAV ++ + G+P +IP+A +FERYAG ++H
Sbjct: 378 ASGDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGP-EYKHQ 436
Query: 386 EATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEFKQSGSIKVTVGLTGMVQVRGTTY 445
E P + E R+ LVVR +ST GN DY+ DW F ++G+I + G TG+ V+G
Sbjct: 437 EMGQPNVST-ERRE---LVVRWISTVGNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKA 492
Query: 446 --THKDHMEEDV-YGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRTTRVNDRR 502
H + ++D YGTL+ N + H H +RLDLDVDG+ NS V + N
Sbjct: 493 KTMHDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMD-PVVKPNTAG 551
Query: 503 SSRKSYWTVDSKTAKTESDARIKLGSEPAEL-LFVNPNKKTKMGNLIGYRLIPEG----- 556
R S V+ E DA K +P + L NPNK+ +MGN + Y++IP
Sbjct: 552 GPRTSTMQVNQYNIGNEQDAAQKF--DPGTIRLLSNPNKENRMGNPVSYQIIPYAGGTHP 609
Query: 557 -VTGALLSSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDDTLAVWSNRNRSI 615
GA + D+ R +F + +WVT Y+ E++ G Y ++S D L +S N S+
Sbjct: 610 VAKGAQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESL 669
Query: 616 ENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGFELRPSNFFESNPVL 661
+N D V+W T G HV E++P+MPT L+P NFF+ P L
Sbjct: 670 DNTDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTL 715
>pdb|3LOY|A Chain A, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
pdb|3LOY|B Chain B, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
pdb|3LOY|C Chain C, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
Length = 633
Score = 223 bits (569), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 185/664 (27%), Positives = 296/664 (44%), Gaps = 60/664 (9%)
Query: 28 HPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETTTNP--- 84
HP D ++ +E ++ A + F + +P K+ +I +L+ E T P
Sbjct: 2 HPYDPISDAELQLTSQLIKDA--TKGPERPHFIQIDRLDPPKKDMIRYLEAERTGKPLPH 59
Query: 85 -PRQAFVIARIDHQTHELIVDLSLQEI-ASKRIYSGYGYPMFTFEDQENADKLAFTYPPF 142
R +V I ++ +V++S I +++ G P+ ED + ++LA T+P
Sbjct: 60 ISRMTYVYYYIGLDFYKALVNVSYGHIITNQKQPKGVIGPLIA-EDIQEIEELATTHPIV 118
Query: 143 VASIRRRGLKLE---EVVCESFSVGWYGAEEEEGKNKKRIVKVMCYYMNGT---VNLFMR 196
A I + LKL VVC+ + G + K + +++ Y + N +
Sbjct: 119 KAEIEK--LKLPPHVRVVCDPWMNG------TDSKEDRMLIQCYMYLASAAHPESNHYSL 170
Query: 197 PIEGISMTVDLDEMKII------GFQDRVTVPVPKADETEFRE--SKIKPPFRQSLKAIT 248
P++ S + K + G D DE F E + LK +
Sbjct: 171 PLK-FSPVFECLTKKFVRMDYLPGGADETVTETQAWDEFPFVEYHPDLNGETIVPLKPLI 229
Query: 249 VVQPDGPSFTIDGHMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEM 308
V QP+GPSF +DGH I W WEF + VR G +IYD+ + R V+Y+ +SEM
Sbjct: 230 VQQPEGPSFNVDGHKISWQGWEFFVIPTVREGF-----AIYDIHFK-GRSVVYRLSLSEM 283
Query: 309 FVPYMDLTEEWQRRTFFDAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPK 368
VPY D + R+ FD G+ G+G +L DC +MD +G IP
Sbjct: 284 TVPYGDPRAPFHRKQAFDLGDCGFGATGNSLALGCDCLGVIKYMDCRRVNTNGDSVLIPN 343
Query: 369 AFCIFERYAGDIMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEFKQSGSI 428
C+ E+ G ++++HT + R+ VV+T++T N +Y+ + F Q+G I
Sbjct: 344 TVCLHEQDGG-LLYKHTNYRTNVPVIARRRE---FVVQTIATVANXEYMLNIIFDQAGEI 399
Query: 429 KVTVGLTGMVQVRGTTYTHKDHMEEDV---YGTLVAENSIAIHHDHFLTYRLDLDVDGDA 485
++ V TG++ +++DV +GT V +A +H H L++R+D VDG
Sbjct: 400 RIHVRATGILSTMP--------LDKDVTVPWGTNVGPRVMAAYHQHMLSFRIDPAVDGYE 451
Query: 486 NSFVRSKL----RTTRVNDRRSSRKSYWTVDSKTAKTESDARIKLGSEPAELLFVNPNKK 541
N+ V + + T++N + TV K E + +NP K
Sbjct: 452 NTVVFDDVIRMEKNTKLNPYNVGFVTERTVVEKPGYVEQSPFTNRSYKIINENKINPISK 511
Query: 542 TKMGNLIGYRLIPEGVTGALLSSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHG 601
+ Y+++ L D + RA F VWVT Y +E +A G + +QS
Sbjct: 512 KP----VAYKIMMPARQMLLADEDSYNNKRAQFATQQVWVTKYRDNELYAAGEFTNQSQT 567
Query: 602 DDTLAVWSNRNRSIENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGFELRPSNFFESNPVL 661
D L VW+ R+ ++ N + V+W TLGF H+P EDFPVMP L P FF+ NP L
Sbjct: 568 DTGLGVWARRDENVRNDNPVVWATLGFTHIPRVEDFPVMPVEAHEIALVPFGFFDKNPAL 627
Query: 662 KVKQ 665
V Q
Sbjct: 628 SVPQ 631
>pdb|1IVU|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Initial Intermediate In
Topaquinone Biogenesis
pdb|1IVU|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Initial Intermediate In
Topaquinone Biogenesis
pdb|1WMP|A Chain A, Crystal Structure Of Amine Oxidase Complexed With Cobalt
Ion
pdb|1WMP|B Chain B, Crystal Structure Of Amine Oxidase Complexed With Cobalt
Ion
pdb|1AVK|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
Length = 638
Score = 221 bits (562), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 148/529 (27%), Positives = 247/529 (46%), Gaps = 28/529 (5%)
Query: 142 FVASIRRRGLKLEEVVCESFSVGWYGAEEEEGKNKKRIVKVMCYYMNGTVN-LFMRPIEG 200
++ ++ R L + +V S G + EE G+ RI++ + + + + + P++G
Sbjct: 118 WLKALAARNLDVSKVRVAPLSAGVFEYAEERGR---RILRGLAFVQDFPEDSAWAHPVDG 174
Query: 201 ISMTVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKPPFRQSLKAITVVQPDGPSFTI- 259
+ VD+ ++ D PVP A+ + + ++ P R + K I++ QP+GPSFT+
Sbjct: 175 LVAYVDVVSKEVTRVIDTGVFPVP-AEHGNYTDPELTGPLRTTQKPISITQPEGPSFTVT 233
Query: 260 DGHMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEW 319
G+ I W W + FDVR G+++ + D ++ R ++ + ++EM VPY D +
Sbjct: 234 GGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDRL--RPIINRASIAEMVVPYGDPSPIR 291
Query: 320 QRRTFFDAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGD 379
+ +FD GEY G + +LE DC + ++ S G PR+I C+ E G
Sbjct: 292 SWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWG- 350
Query: 380 IMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEFKQSGSIKVTVGLTGMVQ 439
I+ +H++ + R++ +V+ +T GNYDY W G+I+ TG+V
Sbjct: 351 ILAKHSDLW---SGINYTRRNRRMVISFFTTIGNYDYGFYWYLYLDGTIEFEAKATGVVF 407
Query: 440 VRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDAN-----SFVRSKLR 494
D++ + +A A H H + RLD+ +DG N VR +
Sbjct: 408 TSAFPEGGSDNISQ------LAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVVRQTMG 461
Query: 495 TTRVNDRRSSRKSYWTVDSKTAKTESDARIKLGSEPAELLFVNPNKKTKMGNLIGYRLIP 554
SRK A E+DAR + NP K ++ +GY+L
Sbjct: 462 PGNERGNAFSRKRTVLTRESEAVREADARTG-----RTWIISNPESKNRLNEPVGYKLHA 516
Query: 555 EGVTGALLSSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDDTLAVWSNRNRS 614
L RAAF ++WVT Y E++ G + +Q G L + ++R
Sbjct: 517 HNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRD 576
Query: 615 IENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGFELRPSNFFESNPVLKV 663
I+ +DIV+W+T G H P ED+P+MP GF+LRP FF+ +PVL V
Sbjct: 577 IDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDV 625
>pdb|1EKM|A Chain A, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
pdb|1EKM|B Chain B, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
pdb|1EKM|C Chain C, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
Length = 656
Score = 219 bits (557), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 176/664 (26%), Positives = 303/664 (45%), Gaps = 43/664 (6%)
Query: 22 VPSHQYHPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETT 81
P+ HPLD L+ +E + V + + K++F V L EP+++ I W K +
Sbjct: 1 APARPAHPLDPLSTAEIKAATNTVKSYF---AGKKISFNTVTLREPARKAYIQW-KEQGG 56
Query: 82 TNPPRQAF--VIARIDHQTHELIVDLSLQEIASKRIYSGYGYPMFTFEDQENADKLAFTY 139
PPR A+ ++ E +VDL+ + R P+ T ED + +++
Sbjct: 57 PLPPRLAYYVILEAGKPGVKEGLVDLASLSVIETRALETV-QPILTVEDLCSTEEVIRND 115
Query: 140 PPFVASIRRRGL---KLEEVVCESFSVGWYGAEEEEGKNKKRIVKVMCYYMNGTVN-LFM 195
P + G+ ++ +V C+ +++G+ +E KR+ + + YY + + +
Sbjct: 116 PAVIEQCVLSGIPANEMHKVYCDPWTIGY----DERWGTGKRLQQALVYYRSDEDDSQYS 171
Query: 196 RPIEGISMTVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKP--------PFRQSLKAI 247
P++ + VD +E K+I + +P + ++ + + P R I
Sbjct: 172 HPLDFCPI-VDTEEKKVI----FIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPI 226
Query: 248 TVVQPDGPSFTIDGHMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSE 307
V QP+G SF + G+++ W++++FH+ F+ R G+++S S D R + ++ +SE
Sbjct: 227 NVTQPEGVSFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYND--HGNVRPIFHRISLSE 284
Query: 308 MFVPYMDLTEEWQRRTFFDAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIP 367
M VPY QR+ D GEYG G + L DC ++DA+FS + G P +
Sbjct: 285 MIVPYGSPEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVK 344
Query: 368 KAFCIFERYAGDIMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEFKQSGS 427
A CI E G ++++H++ T R LVV + T NY+Y W F Q G+
Sbjct: 345 NAVCIHEEDDG-LLFKHSDFRDNFATSLVTRA-TKLVVSQIFTAANYEYCLYWVFMQDGA 402
Query: 428 IKVTVGLTGMVQVRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANS 487
I++ + LTG++ TY D E +GT V N A +H H + R+D +DGD NS
Sbjct: 403 IRLDIRLTGILN----TYILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNS 458
Query: 488 FVRSKLRTT--RVNDRRSSRKSYWTVDSKTAKTESDARIKLGSEPAELLFV-NPNKKTKM 544
+++ + + + + + T KT D+ S + NPNK
Sbjct: 459 AAACDAKSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPY 518
Query: 545 -GNLIGYRLIPEGVTGALLSSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDD 603
G Y+L+ L RA + +++V V Y + + G + Q GD
Sbjct: 519 SGKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDG 578
Query: 604 TLAV--W-SNRNRSIENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGFELRPSNFFESNPV 660
+ W + + +I+N DI+ ++T G H P EDFP+MP LRP +FF NP
Sbjct: 579 VRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPG 638
Query: 661 LKVK 664
L ++
Sbjct: 639 LDIQ 642
>pdb|1SIH|A Chain A, Agao In Covalent Complex With The Inhibitor Moba ("4-(4-
Methylphenoxy)-2-Butyn-1-Amine")
pdb|1SII|A Chain A, Agao In Covalent Complex With The Inhibitor Noba
("4-(2-Naphthyloxy)- 2-Butyn-1-Amine")
pdb|1RJO|A Chain A, Agao + Xe
pdb|2BT3|A Chain A, Agao In Complex With Ruthenium-c4-wire At 1.73 Angstroms
pdb|1W4N|A Chain A, Agao Covalent Complex With Tranylcypromine
pdb|1W4N|B Chain B, Agao Covalent Complex With Tranylcypromine
pdb|1W5Z|A Chain A, Agao Covalent Complex With Benzylhydrazine
pdb|1W6C|A Chain A, Agao Holoenzyme In A Small Cell, At 2.2 Angstroms
pdb|1W6G|A Chain A, Agao Holoenzyme At 1.55 Angstroms
pdb|2CFD|A Chain A, Agao In Complex With Wc4l3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Lambda Enantiomer, Data Set 3)
pdb|2CFD|B Chain B, Agao In Complex With Wc4l3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Lambda Enantiomer, Data Set 3)
pdb|2CFG|A Chain A, Agao In Complex With Wc4d3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Delta Enantiomer, Data Set 3)
pdb|2CFG|B Chain B, Agao In Complex With Wc4d3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Delta Enantiomer, Data Set 3)
pdb|2CFK|A Chain A, Agao In Complex With Wc5 (Ru-Wire Inhibitor, 5-Carbon
Linker)
pdb|2CFL|A Chain A, Agao In Complex With Wc6b (Ru-Wire Inhibitor, 6-Carbon
Linker, Data Set B)
pdb|2CFW|A Chain A, Agao In Complex With Wc7a (Ru-Wire Inhibitor, 7-Carbon
Linker, Data Set A)
pdb|2CG0|A Chain A, Agao In Complex With Wc9a (Ru-Wire Inhibitor, 9-Carbon
Linker, Data Set A)
pdb|2CG1|A Chain A, Agao In Complex With Wc11b (Ru-Wire Inhibitor, 11-Carbon
Linker, Data Set B)
pdb|3KII|A Chain A, Agao 5-Phenoxy-2,3-Pentadienylamine Complex
pdb|3KII|B Chain B, Agao 5-Phenoxy-2,3-Pentadienylamine Complex
pdb|3KN4|A Chain A, Agao 6-Phenyl-2,3-Hexadienylamine Complex
Length = 646
Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 147/529 (27%), Positives = 246/529 (46%), Gaps = 28/529 (5%)
Query: 142 FVASIRRRGLKLEEVVCESFSVGWYGAEEEEGKNKKRIVKVMCYYMNGTVN-LFMRPIEG 200
++ ++ R L + +V S G + EE G+ RI++ + + + + + P++G
Sbjct: 116 WLKALAARNLDVSKVRVAPLSAGVFEYAEERGR---RILRGLAFVQDFPEDSAWAHPVDG 172
Query: 201 ISMTVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKPPFRQSLKAITVVQPDGPSFTI- 259
+ VD+ ++ D PVP A+ + + ++ P R + K I++ QP+GPSFT+
Sbjct: 173 LVAYVDVVSKEVTRVIDTGVFPVP-AEHGNYTDPELTGPLRTTQKPISITQPEGPSFTVT 231
Query: 260 DGHMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEW 319
G+ I W W + FDVR G+++ + D ++ R ++ + ++EM VPY D +
Sbjct: 232 GGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDRL--RPIINRASIAEMVVPYGDPSPIR 289
Query: 320 QRRTFFDAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGD 379
+ +FD GEY G + +LE DC + ++ S G PR+I C+ E G
Sbjct: 290 SWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWG- 348
Query: 380 IMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEFKQSGSIKVTVGLTGMVQ 439
I+ +H++ + R++ +V+ +T GN DY W G+I+ TG+V
Sbjct: 349 ILAKHSDLW---SGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVVF 405
Query: 440 VRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDAN-----SFVRSKLR 494
D++ + +A A H H + RLD+ +DG N VR +
Sbjct: 406 TSAFPEGGSDNISQ------LAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVVRQTMG 459
Query: 495 TTRVNDRRSSRKSYWTVDSKTAKTESDARIKLGSEPAELLFVNPNKKTKMGNLIGYRLIP 554
SRK A E+DAR + NP K ++ +GY+L
Sbjct: 460 PGNERGNAFSRKRTVLTRESEAVREADARTG-----RTWIISNPESKNRLNEPVGYKLHA 514
Query: 555 EGVTGALLSSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDDTLAVWSNRNRS 614
L RAAF ++WVT Y E++ G + +Q G L + ++R
Sbjct: 515 HNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRD 574
Query: 615 IENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGFELRPSNFFESNPVLKV 663
I+ +DIV+W+T G H P ED+P+MP GF+LRP FF+ +PVL V
Sbjct: 575 IDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDV 623
>pdb|1IVV|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Early Intermediate In
Topaquinone Biogenesis
pdb|1IVV|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Early Intermediate In
Topaquinone Biogenesis
pdb|1IVW|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Late Intermediate In
Topaquinone Biogenesis
pdb|1IVW|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Late Intermediate In
Topaquinone Biogenesis
pdb|1IVX|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Holo Form Generated By
Biogenesis In Crystal.
pdb|1IVX|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Holo Form Generated By
Biogenesis In Crystal.
pdb|1IQX|A Chain A, Crystal Structure Of Cobalt-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQX|B Chain B, Crystal Structure Of Cobalt-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQY|A Chain A, Crystal Structure Of Nickel-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQY|B Chain B, Crystal Structure Of Nickel-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IU7|A Chain A, Holo Form Of Copper-Containing Amine Oxidase From
Arthrobacter Globiformis
pdb|1IU7|B Chain B, Holo Form Of Copper-Containing Amine Oxidase From
Arthrobacter Globiformis
pdb|1WMN|A Chain A, Crystal Structure Of Topaquinone-Containing Amine Oxidase
Activated By Cobalt Ion
pdb|1WMN|B Chain B, Crystal Structure Of Topaquinone-Containing Amine Oxidase
Activated By Cobalt Ion
pdb|1WMO|A Chain A, Crystal Structure Of Topaquinone-containing Amine Oxidase
Activated By Nickel Ion
pdb|1WMO|B Chain B, Crystal Structure Of Topaquinone-containing Amine Oxidase
Activated By Nickel Ion
pdb|1AV4|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
pdb|1AVL|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
pdb|2E2T|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Phenylhydrazine
pdb|2ZL8|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Substrate Schiff-Base
Intermediate Formed With Ethylamine
pdb|2ZL8|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Substrate Schiff-Base
Intermediate Formed With Ethylamine
pdb|3AMO|A Chain A, Time-Resolved X-Ray Crystal Structure Analysis Of
Enzymatic Reaction Of Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|3AMO|B Chain B, Time-Resolved X-Ray Crystal Structure Analysis Of
Enzymatic Reaction Of Copper Amine Oxidase From
Arthrobacter Globiformis
Length = 638
Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 147/529 (27%), Positives = 246/529 (46%), Gaps = 28/529 (5%)
Query: 142 FVASIRRRGLKLEEVVCESFSVGWYGAEEEEGKNKKRIVKVMCYYMNGTVN-LFMRPIEG 200
++ ++ R L + +V S G + EE G+ RI++ + + + + + P++G
Sbjct: 118 WLKALAARNLDVSKVRVAPLSAGVFEYAEERGR---RILRGLAFVQDFPEDSAWAHPVDG 174
Query: 201 ISMTVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKPPFRQSLKAITVVQPDGPSFTI- 259
+ VD+ ++ D PVP A+ + + ++ P R + K I++ QP+GPSFT+
Sbjct: 175 LVAYVDVVSKEVTRVIDTGVFPVP-AEHGNYTDPELTGPLRTTQKPISITQPEGPSFTVT 233
Query: 260 DGHMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEW 319
G+ I W W + FDVR G+++ + D ++ R ++ + ++EM VPY D +
Sbjct: 234 GGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDRL--RPIINRASIAEMVVPYGDPSPIR 291
Query: 320 QRRTFFDAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGD 379
+ +FD GEY G + +LE DC + ++ S G PR+I C+ E G
Sbjct: 292 SWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWG- 350
Query: 380 IMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEFKQSGSIKVTVGLTGMVQ 439
I+ +H++ + R++ +V+ +T GN DY W G+I+ TG+V
Sbjct: 351 ILAKHSDLW---SGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVVF 407
Query: 440 VRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDAN-----SFVRSKLR 494
D++ + +A A H H + RLD+ +DG N VR +
Sbjct: 408 TSAFPEGGSDNISQ------LAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVVRQTMG 461
Query: 495 TTRVNDRRSSRKSYWTVDSKTAKTESDARIKLGSEPAELLFVNPNKKTKMGNLIGYRLIP 554
SRK A E+DAR + NP K ++ +GY+L
Sbjct: 462 PGNERGNAFSRKRTVLTRESEAVREADARTG-----RTWIISNPESKNRLNEPVGYKLHA 516
Query: 555 EGVTGALLSSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDDTLAVWSNRNRS 614
L RAAF ++WVT Y E++ G + +Q G L + ++R
Sbjct: 517 HNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRD 576
Query: 615 IENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGFELRPSNFFESNPVLKV 663
I+ +DIV+W+T G H P ED+P+MP GF+LRP FF+ +PVL V
Sbjct: 577 IDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDV 625
>pdb|2E2U|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
4-Hydroxybenzylhydrazine
pdb|2E2U|B Chain B, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
4-Hydroxybenzylhydrazine
pdb|2E2V|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Benzylhydrazine
pdb|2E2V|B Chain B, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Benzylhydrazine
Length = 628
Score = 217 bits (553), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 147/529 (27%), Positives = 246/529 (46%), Gaps = 28/529 (5%)
Query: 142 FVASIRRRGLKLEEVVCESFSVGWYGAEEEEGKNKKRIVKVMCYYMNGTVN-LFMRPIEG 200
++ ++ R L + +V S G + EE G+ RI++ + + + + + P++G
Sbjct: 118 WLKALAARNLDVSKVRVAPLSAGVFEYAEERGR---RILRGLAFVQDFPEDSAWAHPVDG 174
Query: 201 ISMTVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKPPFRQSLKAITVVQPDGPSFTI- 259
+ VD+ ++ D PVP A+ + + ++ P R + K I++ QP+GPSFT+
Sbjct: 175 LVAYVDVVSKEVTRVIDTGVFPVP-AEHGNYTDPELTGPLRTTQKPISITQPEGPSFTVT 233
Query: 260 DGHMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEW 319
G+ I W W + FDVR G+++ + D ++ R ++ + ++EM VPY D +
Sbjct: 234 GGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDRL--RPIINRASIAEMVVPYGDPSPIR 291
Query: 320 QRRTFFDAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGD 379
+ +FD GEY G + +LE DC + ++ S G PR+I C+ E G
Sbjct: 292 SWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWG- 350
Query: 380 IMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEFKQSGSIKVTVGLTGMVQ 439
I+ +H++ + R++ +V+ +T GN DY W G+I+ TG+V
Sbjct: 351 ILAKHSDLW---SGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVVF 407
Query: 440 VRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDAN-----SFVRSKLR 494
D++ + +A A H H + RLD+ +DG N VR +
Sbjct: 408 TSAFPEGGSDNISQ------LAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVVRQTMG 461
Query: 495 TTRVNDRRSSRKSYWTVDSKTAKTESDARIKLGSEPAELLFVNPNKKTKMGNLIGYRLIP 554
SRK A E+DAR + NP K ++ +GY+L
Sbjct: 462 PGNERGNAFSRKRTVLTRESEAVREADARTG-----RTWIISNPESKNRLNEPVGYKLHA 516
Query: 555 EGVTGALLSSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDDTLAVWSNRNRS 614
L RAAF ++WVT Y E++ G + +Q G L + ++R
Sbjct: 517 HNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRD 576
Query: 615 IENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGFELRPSNFFESNPVLKV 663
I+ +DIV+W+T G H P ED+P+MP GF+LRP FF+ +PVL V
Sbjct: 577 IDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDV 625
>pdb|1UI7|A Chain A, Site-Directed Mutagenesis Of His433 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
pdb|1UI7|B Chain B, Site-Directed Mutagenesis Of His433 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
Length = 638
Score = 217 bits (552), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 147/529 (27%), Positives = 246/529 (46%), Gaps = 28/529 (5%)
Query: 142 FVASIRRRGLKLEEVVCESFSVGWYGAEEEEGKNKKRIVKVMCYYMNGTVN-LFMRPIEG 200
++ ++ R L + +V S G + EE G+ RI++ + + + + + P++G
Sbjct: 118 WLKALAARNLDVSKVRVAPLSAGVFEYAEERGR---RILRGLAFVQDFPEDSAWAHPVDG 174
Query: 201 ISMTVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKPPFRQSLKAITVVQPDGPSFTI- 259
+ VD+ ++ D PVP A+ + + ++ P R + K I++ QP+GPSFT+
Sbjct: 175 LVAYVDVVSKEVTRVIDTGVFPVP-AEHGNYTDPELTGPLRTTQKPISITQPEGPSFTVT 233
Query: 260 DGHMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEW 319
G+ I W W + FDVR G+++ + D ++ R ++ + ++EM VPY D +
Sbjct: 234 GGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDRL--RPIINRASIAEMVVPYGDPSPIR 291
Query: 320 QRRTFFDAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGD 379
+ +FD GEY G + +LE DC + ++ S G PR+I C+ E G
Sbjct: 292 SWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWG- 350
Query: 380 IMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEFKQSGSIKVTVGLTGMVQ 439
I+ +H++ + R++ +V+ +T GNYDY W G+I+ TG+V
Sbjct: 351 ILAKHSDLW---SGINYTRRNRRMVISFFTTIGNYDYGFYWYLYLDGTIEFEAKATGVVF 407
Query: 440 VRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDAN-----SFVRSKLR 494
D++ + +A A H + RLD+ +DG N VR +
Sbjct: 408 TSAFPEGGSDNISQ------LAPGLGAPFHQAIFSARLDMAIDGFTNRVEEEDVVRQTMG 461
Query: 495 TTRVNDRRSSRKSYWTVDSKTAKTESDARIKLGSEPAELLFVNPNKKTKMGNLIGYRLIP 554
SRK A E+DAR + NP K ++ +GY+L
Sbjct: 462 PGNERGNAFSRKRTVLTRESEAVREADARTG-----RTWIISNPESKNRLNEPVGYKLHA 516
Query: 555 EGVTGALLSSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDDTLAVWSNRNRS 614
L RAAF ++WVT Y E++ G + +Q G L + ++R
Sbjct: 517 HNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRD 576
Query: 615 IENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGFELRPSNFFESNPVLKV 663
I+ +DIV+W+T G H P ED+P+MP GF+LRP FF+ +PVL V
Sbjct: 577 IDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDV 625
>pdb|3SX1|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SX1|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SX1|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SXX|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|D Chain D, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|E Chain E, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|F Chain F, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3T0U|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
pdb|3T0U|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
pdb|3T0U|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
Length = 692
Score = 217 bits (552), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 175/658 (26%), Positives = 301/658 (45%), Gaps = 43/658 (6%)
Query: 28 HPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETTTNPPRQ 87
HPLD L+ +E + V + + K++F V L EP+++ I W K + PPR
Sbjct: 23 HPLDPLSTAEIKAATNTVKSYF---AGKKISFNTVTLREPARKAYIQW-KEQGGPLPPRL 78
Query: 88 AF--VIARIDHQTHELIVDLSLQEIASKRIYSGYGYPMFTFEDQENADKLAFTYPPFVAS 145
A+ ++ E +VDL+ + R P+ T ED + +++ P +
Sbjct: 79 AYYVILEAGKPGVKEGLVDLASLSVIETRALETV-QPILTVEDLCSTEEVIRNDPAVIEQ 137
Query: 146 IRRRGL---KLEEVVCESFSVGWYGAEEEEGKNKKRIVKVMCYYMNGTVN-LFMRPIEGI 201
G+ ++ +V C+ +++G+ +E KR+ + + YY + + + P++
Sbjct: 138 CVLSGIPANEMHKVYCDPWTIGY----DERWGTGKRLQQALVYYRSDEDDSQYSHPLDFC 193
Query: 202 SMTVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKP--------PFRQSLKAITVVQPD 253
+ VD +E K+I + +P + ++ + + P R I V QP+
Sbjct: 194 PI-VDTEEKKVI----FIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPE 248
Query: 254 GPSFTIDGHMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYM 313
G SF + G+++ W++++FH+ F+ R G+++S S D R + ++ +SEM VPY
Sbjct: 249 GVSFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYND--HGNVRPIFHRISLSEMIVPYG 306
Query: 314 DLTEEWQRRTFFDAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIF 373
QR+ D GEYG G + L DC ++DA+FS + G P + A CI
Sbjct: 307 SPEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIH 366
Query: 374 ERYAGDIMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEFKQSGSIKVTVG 433
E G ++++H++ T R LVV + T NY+Y W F Q G+I++ +
Sbjct: 367 EEDDG-LLFKHSDFRDNFATSLVTRA-TKLVVSQIFTAANYEYCLYWVFMQDGAIRLDIR 424
Query: 434 LTGMVQVRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKL 493
LTG++ TY D E +GT V N A +H H + R+D +DGD NS
Sbjct: 425 LTGILN----TYILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDA 480
Query: 494 RTT--RVNDRRSSRKSYWTVDSKTAKTESDARIKLGSEPAELLFV-NPNKKTKM-GNLIG 549
+++ + + + + + T KT D+ S + NPNK G
Sbjct: 481 KSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPS 540
Query: 550 YRLIPEGVTGALLSSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDDTLAV-- 607
Y+L+ L RA + +++V V Y + + G + Q GD +
Sbjct: 541 YKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMRE 600
Query: 608 W-SNRNRSIENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGFELRPSNFFESNPVLKVK 664
W + + +I+N DI+ ++T G H P EDFP+MP LRP +FF NP L ++
Sbjct: 601 WIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQ 658
>pdb|1A2V|A Chain A, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|B Chain B, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|C Chain C, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|D Chain D, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|E Chain E, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|F Chain F, Copper Amine Oxidase From Hansenula Polymorpha
Length = 655
Score = 216 bits (550), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 175/663 (26%), Positives = 302/663 (45%), Gaps = 43/663 (6%)
Query: 23 PSHQYHPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETTT 82
P+ HPLD L+ +E + V + + K++F V L EP+++ I W K +
Sbjct: 1 PARPAHPLDPLSTAEIKAATNTVKSYF---AGKKISFNTVTLREPARKAYIQW-KEQGGP 56
Query: 83 NPPRQAF--VIARIDHQTHELIVDLSLQEIASKRIYSGYGYPMFTFEDQENADKLAFTYP 140
PPR A+ ++ E +VDL+ + R P+ T ED + +++ P
Sbjct: 57 LPPRLAYYVILEAGKPGVKEGLVDLASLSVIETRALETV-QPILTVEDLCSTEEVIRNDP 115
Query: 141 PFVASIRRRGL---KLEEVVCESFSVGWYGAEEEEGKNKKRIVKVMCYYMNGTVN-LFMR 196
+ G+ ++ +V C+ +++G+ +E KR+ + + YY + + +
Sbjct: 116 AVIEQCVLSGIPANEMHKVYCDPWTIGY----DERWGTGKRLQQALVYYRSDEDDSQYSH 171
Query: 197 PIEGISMTVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKP--------PFRQSLKAIT 248
P++ + VD +E K+I + +P + ++ + + P R I
Sbjct: 172 PLDFCPI-VDTEEKKVI----FIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPIN 226
Query: 249 VVQPDGPSFTIDGHMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEM 308
V QP+G SF + G+++ W++++FH+ F+ R G+++S S D R + ++ +SEM
Sbjct: 227 VTQPEGVSFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYND--HGNVRPIFHRISLSEM 284
Query: 309 FVPYMDLTEEWQRRTFFDAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPK 368
VPY QR+ D GEYG G + L DC ++DA+FS + G P +
Sbjct: 285 IVPYGSPEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKN 344
Query: 369 AFCIFERYAGDIMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEFKQSGSI 428
A CI E G ++++H++ T R LVV + T N +Y W F Q G+I
Sbjct: 345 AVCIHEEDDG-LLFKHSDFRDNFATSLVTRA-TKLVVSQIFTAANXEYCLYWVFMQDGAI 402
Query: 429 KVTVGLTGMVQVRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANSF 488
++ + LTG++ TY D E +GT V N A +H H + R+D +DGD NS
Sbjct: 403 RLDIRLTGILN----TYILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSA 458
Query: 489 VRSKLRTT--RVNDRRSSRKSYWTVDSKTAKTESDARIKLGSEPAELLFV-NPNKKTKM- 544
+++ + + + + + T KT D+ S + NPNK
Sbjct: 459 AACDAKSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYS 518
Query: 545 GNLIGYRLIPEGVTGALLSSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDDT 604
G Y+L+ L RA + +++V V Y + + G + Q GD
Sbjct: 519 GKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGV 578
Query: 605 LAV--W-SNRNRSIENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGFELRPSNFFESNPVL 661
+ W + + +I+N DI+ ++T G H P EDFP+MP LRP +FF NP L
Sbjct: 579 RGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGL 638
Query: 662 KVK 664
++
Sbjct: 639 DIQ 641
>pdb|2YX9|A Chain A, Crystal Structure Of D298k Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2YX9|B Chain B, Crystal Structure Of D298k Copper Amine Oxidase From
Arthrobacter Globiformis
Length = 638
Score = 215 bits (547), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 146/529 (27%), Positives = 245/529 (46%), Gaps = 28/529 (5%)
Query: 142 FVASIRRRGLKLEEVVCESFSVGWYGAEEEEGKNKKRIVKVMCYYMNGTVN-LFMRPIEG 200
++ ++ R L + +V S G + EE G+ RI++ + + + + + P++G
Sbjct: 118 WLKALAARNLDVSKVRVAPLSAGVFEYAEERGR---RILRGLAFVQDFPEDSAWAHPVDG 174
Query: 201 ISMTVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKPPFRQSLKAITVVQPDGPSFTI- 259
+ VD+ ++ D PVP A+ + + ++ P R + K I++ QP+GPSFT+
Sbjct: 175 LVAYVDVVSKEVTRVIDTGVFPVP-AEHGNYTDPELTGPLRTTQKPISITQPEGPSFTVT 233
Query: 260 DGHMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEW 319
G+ I W W + FDVR G+++ + D ++ R ++ + ++EM VPY D +
Sbjct: 234 GGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDRL--RPIINRASIAEMVVPYGDPSPIR 291
Query: 320 QRRTFFDAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGD 379
+ +F GEY G + +LE DC + ++ S G PR+I C+ E G
Sbjct: 292 SWQNYFKTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWG- 350
Query: 380 IMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEFKQSGSIKVTVGLTGMVQ 439
I+ +H++ + R++ +V+ +T GN DY W G+I+ TG+V
Sbjct: 351 ILAKHSDLW---SGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVVF 407
Query: 440 VRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDAN-----SFVRSKLR 494
D++ + +A A H H + RLD+ +DG N VR +
Sbjct: 408 TSAFPEGGSDNISQ------LAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVVRQTMG 461
Query: 495 TTRVNDRRSSRKSYWTVDSKTAKTESDARIKLGSEPAELLFVNPNKKTKMGNLIGYRLIP 554
SRK A E+DAR + NP K ++ +GY+L
Sbjct: 462 PGNERGNAFSRKRTVLTRESEAVREADARTG-----RTWIISNPESKNRLNEPVGYKLHA 516
Query: 555 EGVTGALLSSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDDTLAVWSNRNRS 614
L RAAF ++WVT Y E++ G + +Q G L + ++R
Sbjct: 517 HNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRD 576
Query: 615 IENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGFELRPSNFFESNPVLKV 663
I+ +DIV+W+T G H P ED+P+MP GF+LRP FF+ +PVL V
Sbjct: 577 IDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDV 625
>pdb|2CWT|A Chain A, Catalytic Base Deletion In Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2CWT|B Chain B, Catalytic Base Deletion In Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2CWU|A Chain A, Substrate Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWU|B Chain B, Substrate Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWV|A Chain A, Product Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWV|B Chain B, Product Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2D1W|A Chain A, Substrate Schiff-Base Intermediate With Tyramine In Copper
Amine Oxidase From Arthrobacter Globiformis
pdb|2D1W|B Chain B, Substrate Schiff-Base Intermediate With Tyramine In Copper
Amine Oxidase From Arthrobacter Globiformis
Length = 638
Score = 214 bits (546), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 146/529 (27%), Positives = 245/529 (46%), Gaps = 28/529 (5%)
Query: 142 FVASIRRRGLKLEEVVCESFSVGWYGAEEEEGKNKKRIVKVMCYYMNGTVN-LFMRPIEG 200
++ ++ R L + +V S G + EE G+ RI++ + + + + + P++G
Sbjct: 118 WLKALAARNLDVSKVRVAPLSAGVFEYAEERGR---RILRGLAFVQDFPEDSAWAHPVDG 174
Query: 201 ISMTVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKPPFRQSLKAITVVQPDGPSFTI- 259
+ VD+ ++ D PVP A+ + + ++ P R + K I++ QP+GPSFT+
Sbjct: 175 LVAYVDVVSKEVTRVIDTGVFPVP-AEHGNYTDPELTGPLRTTQKPISITQPEGPSFTVT 233
Query: 260 DGHMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEW 319
G+ I W W + FDVR G+++ + D ++ R ++ + ++EM VPY D +
Sbjct: 234 GGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDRL--RPIINRASIAEMVVPYGDPSPIR 291
Query: 320 QRRTFFDAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGD 379
+ +F GEY G + +LE DC + ++ S G PR+I C+ E G
Sbjct: 292 SWQNYFATGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWG- 350
Query: 380 IMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEFKQSGSIKVTVGLTGMVQ 439
I+ +H++ + R++ +V+ +T GN DY W G+I+ TG+V
Sbjct: 351 ILAKHSDLW---SGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVVF 407
Query: 440 VRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDAN-----SFVRSKLR 494
D++ + +A A H H + RLD+ +DG N VR +
Sbjct: 408 TSAFPEGGSDNISQ------LAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVVRQTMG 461
Query: 495 TTRVNDRRSSRKSYWTVDSKTAKTESDARIKLGSEPAELLFVNPNKKTKMGNLIGYRLIP 554
SRK A E+DAR + NP K ++ +GY+L
Sbjct: 462 PGNERGNAFSRKRTVLTRESEAVREADARTG-----RTWIISNPESKNRLNEPVGYKLHA 516
Query: 555 EGVTGALLSSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDDTLAVWSNRNRS 614
L RAAF ++WVT Y E++ G + +Q G L + ++R
Sbjct: 517 HNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRD 576
Query: 615 IENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGFELRPSNFFESNPVLKV 663
I+ +DIV+W+T G H P ED+P+MP GF+LRP FF+ +PVL V
Sbjct: 577 IDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDV 625
>pdb|1UI8|A Chain A, Site-directed Mutagenesis Of His592 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
pdb|1UI8|B Chain B, Site-directed Mutagenesis Of His592 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
Length = 638
Score = 214 bits (544), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 146/529 (27%), Positives = 245/529 (46%), Gaps = 28/529 (5%)
Query: 142 FVASIRRRGLKLEEVVCESFSVGWYGAEEEEGKNKKRIVKVMCYYMNGTVN-LFMRPIEG 200
++ ++ R L + +V S G + EE G+ RI++ + + + + + P++G
Sbjct: 118 WLKALAARNLDVSKVRVAPLSAGVFEYAEERGR---RILRGLAFVQDFPEDSAWAHPVDG 174
Query: 201 ISMTVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKPPFRQSLKAITVVQPDGPSFTI- 259
+ VD+ ++ D PVP A+ + + ++ P R + K I++ QP+GPSFT+
Sbjct: 175 LVAYVDVVSKEVTRVIDTGVFPVP-AEHGNYTDPELTGPLRTTQKPISITQPEGPSFTVT 233
Query: 260 DGHMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEW 319
G+ I W W + FDVR G+++ + D ++ R ++ + ++EM VPY D +
Sbjct: 234 GGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDRL--RPIINRASIAEMVVPYGDPSPIR 291
Query: 320 QRRTFFDAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGD 379
+ +FD GEY G + +LE DC + ++ S G PR+I C+ E G
Sbjct: 292 SWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWG- 350
Query: 380 IMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEFKQSGSIKVTVGLTGMVQ 439
I+ +H++ + R++ +V+ +T GN DY W G+I+ TG+V
Sbjct: 351 ILAKHSDLW---SGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVVF 407
Query: 440 VRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDAN-----SFVRSKLR 494
D++ + +A A H H + RLD+ +DG N VR +
Sbjct: 408 TSAFPEGGSDNISQ------LAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVVRQTMG 461
Query: 495 TTRVNDRRSSRKSYWTVDSKTAKTESDARIKLGSEPAELLFVNPNKKTKMGNLIGYRLIP 554
SRK A E+DAR + NP K ++ +GY+L
Sbjct: 462 PGNERGNAFSRKRTVLTRESEAVREADARTG-----RTWIISNPESKNRLNEPVGYKLHA 516
Query: 555 EGVTGALLSSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDDTLAVWSNRNRS 614
L RAAF ++WVT Y E++ G + +Q G L + ++R
Sbjct: 517 HNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRD 576
Query: 615 IENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGFELRPSNFFESNPVLKV 663
I+ +DIV+W+T G P ED+P+MP GF+LRP FF+ +PVL V
Sbjct: 577 IDGQDIVVWHTFGLTAFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDV 625
>pdb|3N9H|A Chain A, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|B Chain B, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|C Chain C, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|D Chain D, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|E Chain E, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|F Chain F, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
Length = 692
Score = 210 bits (535), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 173/658 (26%), Positives = 299/658 (45%), Gaps = 43/658 (6%)
Query: 28 HPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETTTNPPRQ 87
HPLD L+ +E + V + + K++F V L EP+++ I W K + PPR
Sbjct: 23 HPLDPLSTAEIKAATNTVKSYF---AGKKISFNTVTLREPARKAYIQW-KEQGGPLPPRL 78
Query: 88 AF--VIARIDHQTHELIVDLSLQEIASKRIYSGYGYPMFTFEDQENADKLAFTYPPFVAS 145
A+ ++ E +VDL+ + R P+ T ED + +++ P +
Sbjct: 79 AYYVILEAGKPGVKEGLVDLASLSVIETRALETV-QPILTVEDLCSTEEVIRNDPAVIEQ 137
Query: 146 IRRRGL---KLEEVVCESFSVGWYGAEEEEGKNKKRIVKVMCYYMNGTVN-LFMRPIEGI 201
G+ ++ +V C+ +++G+ +E KR+ + + YY + + + P++
Sbjct: 138 CVLSGIPANEMHKVYCDPWTIGY----DERWGTGKRLQQALVYYRSDEDDSQYSHPLDFC 193
Query: 202 SMTVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKP--------PFRQSLKAITVVQPD 253
+ VD +E K+I + +P + ++ + + P R I V QP+
Sbjct: 194 PI-VDTEEKKVI----FIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPE 248
Query: 254 GPSFTIDGHMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYM 313
G SF + G+++ W++++FH+ F+ R G+++S S D R + ++ +SEM VP
Sbjct: 249 GVSFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYND--HGNVRPIFHRISLSEMIVPAG 306
Query: 314 DLTEEWQRRTFFDAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIF 373
QR+ D GEYG G + L DC ++DA+FS + G P + A CI
Sbjct: 307 SPEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIH 366
Query: 374 ERYAGDIMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEFKQSGSIKVTVG 433
E G ++++H++ T R LVV + T N +Y W F Q G+I++ +
Sbjct: 367 EEDDG-LLFKHSDFRDNFATSLVTRA-TKLVVSQIFTAANXEYCLYWVFMQDGAIRLDIR 424
Query: 434 LTGMVQVRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKL 493
LTG++ TY D E +GT V N A +H H + R+D +DGD NS
Sbjct: 425 LTGILN----TYILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDA 480
Query: 494 RTTR--VNDRRSSRKSYWTVDSKTAKTESDARIKLGSEPAELLFV-NPNKKTKM-GNLIG 549
+++ + + + + + T KT D+ S + NPNK G
Sbjct: 481 KSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPS 540
Query: 550 YRLIPEGVTGALLSSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDDTLAV-- 607
Y+L+ L RA + +++V V Y + + G + Q GD +
Sbjct: 541 YKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMRE 600
Query: 608 W-SNRNRSIENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGFELRPSNFFESNPVLKVK 664
W + + +I+N DI+ ++T G H P EDFP+MP LRP +FF NP L ++
Sbjct: 601 WIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQ 658
>pdb|2OOV|C Chain C, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|D Chain D, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|E Chain E, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|F Chain F, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OQE|C Chain C, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|D Chain D, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|E Chain E, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|F Chain F, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
Length = 660
Score = 209 bits (531), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 172/656 (26%), Positives = 298/656 (45%), Gaps = 43/656 (6%)
Query: 30 LDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETTTNPPRQAF 89
LD L+ +E + V + + K++F V L EP+++ I W K + PPR A+
Sbjct: 13 LDPLSTAEIKAATNTVKSYF---AGKKISFNTVTLREPARKAYIQW-KEQGGPLPPRLAY 68
Query: 90 --VIARIDHQTHELIVDLSLQEIASKRIYSGYGYPMFTFEDQENADKLAFTYPPFVASIR 147
++ E +VDL+ + R P+ T ED + +++ P +
Sbjct: 69 YVILEAGKPGVKEGLVDLASLSVIETRALETV-QPILTVEDLCSTEEVIRNDPAVIEQCV 127
Query: 148 RRGL---KLEEVVCESFSVGWYGAEEEEGKNKKRIVKVMCYYMNGTVN-LFMRPIEGISM 203
G+ ++ +V C+ +++G+ +E KR+ + + YY + + + P++ +
Sbjct: 128 LSGIPANEMHKVYCDPWTIGY----DERWGTGKRLQQALVYYRSDEDDSQYSHPLDFCPI 183
Query: 204 TVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKP--------PFRQSLKAITVVQPDGP 255
VD +E K+I + +P + ++ + + P R I V QP+G
Sbjct: 184 -VDTEEKKVI----FIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGV 238
Query: 256 SFTIDGHMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDL 315
SF + G+++ W++++FH+ F+ R G+++S S D R + ++ +SEM VPY
Sbjct: 239 SFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYND--HGNVRPIFHRISLSEMIVPYGSP 296
Query: 316 TEEWQRRTFFDAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFER 375
QR+ D GEYG G + L DC ++DA+FS + G P + A CI E
Sbjct: 297 EFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEE 356
Query: 376 YAGDIMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEFKQSGSIKVTVGLT 435
G ++++H++ T R LVV + T N +Y W F Q G+I++ + LT
Sbjct: 357 DDG-LLFKHSDFRDNFATSLVTRA-TKLVVSQIFTAANXEYCLYWVFMQDGAIRLDIRLT 414
Query: 436 GMVQVRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRT 495
G++ TY D E +GT V N A +H H + R+D +DGD NS ++
Sbjct: 415 GILN----TYILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKS 470
Query: 496 T--RVNDRRSSRKSYWTVDSKTAKTESDARIKLGSEPAELLFV-NPNKKTKM-GNLIGYR 551
+ + + + + + T KT D+ S + NPNK G Y+
Sbjct: 471 SPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYK 530
Query: 552 LIPEGVTGALLSSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDDTLAV--W- 608
L+ L RA + +++V V Y + + G + Q GD + W
Sbjct: 531 LVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWI 590
Query: 609 SNRNRSIENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGFELRPSNFFESNPVLKVK 664
+ + +I+N DI+ ++T G H P EDFP+MP LRP +FF NP L ++
Sbjct: 591 GDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQ 646
>pdb|2OOV|A Chain A, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|B Chain B, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OQE|A Chain A, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|B Chain B, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
Length = 660
Score = 206 bits (524), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 171/656 (26%), Positives = 297/656 (45%), Gaps = 43/656 (6%)
Query: 30 LDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETTTNPPRQAF 89
LD L+ +E + V + + K++F V L EP+++ I W K + PPR A+
Sbjct: 13 LDPLSTAEIKAATNTVKSYF---AGKKISFNTVTLREPARKAYIQW-KEQGGPLPPRLAY 68
Query: 90 --VIARIDHQTHELIVDLSLQEIASKRIYSGYGYPMFTFEDQENADKLAFTYPPFVASIR 147
++ E +VDL+ + R P+ T ED + +++ P +
Sbjct: 69 YVILEAGKPGVKEGLVDLASLSVIETRALETV-QPILTVEDLCSTEEVIRNDPAVIEQCV 127
Query: 148 RRGL---KLEEVVCESFSVGWYGAEEEEGKNKKRIVKVMCYYMNGTVN-LFMRPIEGISM 203
G+ ++ +V C+ +++G+ +E KR+ + + YY + + + P++ +
Sbjct: 128 LSGIPANEMHKVYCDPWTIGY----DERWGTGKRLQQALVYYRSDEDDSQYSHPLDFCPI 183
Query: 204 TVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKP--------PFRQSLKAITVVQPDGP 255
VD +E K+I + +P + ++ + + P R I V QP+G
Sbjct: 184 -VDTEEKKVI----FIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGV 238
Query: 256 SFTIDGHMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDL 315
SF + G+++ W++++FH+ F+ R G+++S S D R + ++ +SEM VPY
Sbjct: 239 SFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYND--HGNVRPIFHRISLSEMIVPYGSP 296
Query: 316 TEEWQRRTFFDAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFER 375
QR+ D GEYG G + L DC ++DA+FS + G P + A CI E
Sbjct: 297 EFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEE 356
Query: 376 YAGDIMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEFKQSGSIKVTVGLT 435
G ++++H++ T R LVV + T N +Y W F Q G+I++ + LT
Sbjct: 357 DDG-LLFKHSDFRDNFATSLVTRA-TKLVVSQIFTAANXEYCLYWVFMQDGAIRLDIRLT 414
Query: 436 GMVQVRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRT 495
G++ TY D E +GT V N A +H H + R+D +DGD NS ++
Sbjct: 415 GILN----TYILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKS 470
Query: 496 T--RVNDRRSSRKSYWTVDSKTAKTESDARIKLGSEPAELLFV-NPNKKTKM-GNLIGYR 551
+ + + + + + T KT D+ S + NPNK G Y+
Sbjct: 471 SPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYK 530
Query: 552 LIPEGVTGALLSSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDDTLAV--W- 608
L+ L RA + +++V V Y + + G + Q GD + W
Sbjct: 531 LVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWI 590
Query: 609 SNRNRSIENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGFELRPSNFFESNPVLKVK 664
+ + +I+N DI+ ++T G H P EDFP+ P LRP +FF NP L ++
Sbjct: 591 GDGSENIDNTDILFFHTFGITHFPAPEDFPLXPAEPITLMLRPRHFFTENPGLDIQ 646
>pdb|3NBJ|A Chain A, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|B Chain B, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|C Chain C, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|D Chain D, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|E Chain E, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|F Chain F, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
Length = 657
Score = 205 bits (522), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 174/665 (26%), Positives = 302/665 (45%), Gaps = 45/665 (6%)
Query: 23 PSHQYHPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETTT 82
P+ HPLD L+ +E + V + + K++F V L EP+++ I W K +
Sbjct: 1 PARPAHPLDPLSTAEIKAATNTVKSYF---AGKKISFNTVTLREPARKAYIQW-KEQGGP 56
Query: 83 NPPRQAF--VIARIDHQTHELIVDLSLQEIASKRIYSGYGYPMFTFEDQENADKLAFTYP 140
PPR A+ ++ E +VDL+ + R P+ T ED + +++ P
Sbjct: 57 LPPRLAYYVILEAGKPGVKEGLVDLASLSVIETRALETV-QPILTVEDLCSTEEVIRNDP 115
Query: 141 PFVASIRRRGL---KLEEVVCESFSVGWYGAEEEEGKNKKRIVKVMCYYMNGTVN-LFMR 196
+ G+ ++ +V C+ +++G+ +E KR+ + + YY + + +
Sbjct: 116 AVIEQCVLSGIPANEMHKVYCDPWTIGY----DERWGTGKRLQQALVYYRSDEDDSQYSH 171
Query: 197 PIEGISMTVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKP--------PFRQSLKAIT 248
P++ + VD +E K+I + +P + ++ + + P R I
Sbjct: 172 PLDFCPI-VDTEEKKVI----FIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPIN 226
Query: 249 VVQPDGPSFTIDGHMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEM 308
V QP+G SF + G+++ W++++FH+ F+ R G+++S S D R + ++ +SEM
Sbjct: 227 VTQPEGVSFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYND--HGNVRPIFHRISLSEM 284
Query: 309 FVPYMDLTEEWQRRTFFDAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPK 368
VP+ QR+ D GEYG G + L DC ++DA+FS + G P +
Sbjct: 285 IVPFGSPEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKN 344
Query: 369 AFCIFERYAGDIMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGN-YDYVNDWEFKQSGS 427
A CI E G ++++H++ T R LVV + T N +Y W F Q G+
Sbjct: 345 AVCIHEEDDG-LLFKHSDFRDNFATSLVTRA-TKLVVSQIFTAANXXEYCLYWVFMQDGA 402
Query: 428 IKVTVGLTGMVQVRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANS 487
I++ + LTG++ TY D E +GT V N A +H H + R+D +DGD NS
Sbjct: 403 IRLDIRLTGILN----TYILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNS 458
Query: 488 FVRSKLRTT--RVNDRRSSRKSYWTVDSKTAKTESDARIKLGSEPAELLFV-NPNKKTKM 544
+++ + + + + + T KT D+ S + NPNK
Sbjct: 459 AAACDAKSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPY 518
Query: 545 -GNLIGYRLIPEGVTGALLSSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDD 603
G Y+L+ L RA + +++V V Y + + G + Q GD
Sbjct: 519 SGKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDG 578
Query: 604 TLAV--W-SNRNRSIENKDIVLWYTLGFHHVPYQEDFPV-MPTLNGGFELRPSNFFESNP 659
+ W + + +I+N DI+ ++T G H P EDFP+ MP LRP +FF NP
Sbjct: 579 VRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLXMPAEPITLMLRPRHFFTENP 638
Query: 660 VLKVK 664
L ++
Sbjct: 639 GLDIQ 643
>pdb|3NBB|A Chain A, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|B Chain B, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|C Chain C, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|D Chain D, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|E Chain E, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|F Chain F, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
Length = 663
Score = 205 bits (521), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 174/666 (26%), Positives = 302/666 (45%), Gaps = 45/666 (6%)
Query: 22 VPSHQYHPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETT 81
P+ HPLD L+ +E + V + + K++F V L EP+++ I W K +
Sbjct: 3 APARPAHPLDPLSTAEIKAATNTVKSYF---AGKKISFNTVTLREPARKAYIQW-KEQGG 58
Query: 82 TNPPRQAF--VIARIDHQTHELIVDLSLQEIASKRIYSGYGYPMFTFEDQENADKLAFTY 139
PPR A+ ++ E +VDL+ + R P+ T ED + +++
Sbjct: 59 PLPPRLAYYVILEAGKPGVKEGLVDLASLSVIETRALETV-QPILTVEDLCSTEEVIRND 117
Query: 140 PPFVASIRRRGL---KLEEVVCESFSVGWYGAEEEEGKNKKRIVKVMCYYMNGTVN-LFM 195
P + G+ ++ +V C+ +++G+ +E KR+ + + YY + + +
Sbjct: 118 PAVIEQCVLSGIPANEMHKVYCDPWTIGY----DERWGTGKRLQQALVYYRSDEDDSQYS 173
Query: 196 RPIEGISMTVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKP--------PFRQSLKAI 247
P++ + VD +E K+I + +P + ++ + + P R I
Sbjct: 174 HPLDFCPI-VDTEEKKVI----FIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPI 228
Query: 248 TVVQPDGPSFTIDGHMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSE 307
V QP+G SF + G+++ W++++FH+ F+ R G+++S S D R + ++ +SE
Sbjct: 229 NVTQPEGVSFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYND--HGNVRPIFHRISLSE 286
Query: 308 MFVPYMDLTEEWQRRTFFDAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIP 367
M VP+ QR+ D GEYG G + L DC ++DA+FS + G P +
Sbjct: 287 MIVPFGSPEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVK 346
Query: 368 KAFCIFERYAGDIMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGN-YDYVNDWEFKQSG 426
A CI E G ++++H++ T R LVV + T N +Y W F Q G
Sbjct: 347 NAVCIHEEDDG-LLFKHSDFRDNFATSLVTRA-TKLVVSQIFTAANXXEYCLYWVFMQDG 404
Query: 427 SIKVTVGLTGMVQVRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDAN 486
+I++ + LTG++ TY D E +GT V N A +H H + R+D +DGD N
Sbjct: 405 AIRLDIRLTGILN----TYILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGN 460
Query: 487 SFVRSKLRTT--RVNDRRSSRKSYWTVDSKTAKTESDARIKLGSEPAELLFV-NPNKKTK 543
S +++ + + + + + T KT D+ S + NPNK
Sbjct: 461 SAAACDAKSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNP 520
Query: 544 M-GNLIGYRLIPEGVTGALLSSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGD 602
G Y+L+ L RA + +++V V Y + + G + Q GD
Sbjct: 521 YSGKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGD 580
Query: 603 DTLAV--W-SNRNRSIENKDIVLWYTLGFHHVPYQEDFPV-MPTLNGGFELRPSNFFESN 658
+ W + + +I+N DI+ ++T G H P EDFP+ MP LRP +FF N
Sbjct: 581 GVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLXMPAEPITLMLRPRHFFTEN 640
Query: 659 PVLKVK 664
P L ++
Sbjct: 641 PGLDIQ 646
>pdb|3HI7|A Chain A, Crystal Structure Of Human Diamine Oxidase
pdb|3HI7|B Chain B, Crystal Structure Of Human Diamine Oxidase
pdb|3HIG|A Chain A, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Berenil
pdb|3HIG|B Chain B, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Berenil
pdb|3HII|A Chain A, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Pentamidine
pdb|3HII|B Chain B, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Pentamidine
pdb|3K5T|A Chain A, Crystal Structure Of Human Diamine Oxidase In Space Group
C2221
pdb|3MPH|A Chain A, The Structure Of Human Diamine Oxidase Complexed With An
Inhibitor Aminoguanidine
pdb|3MPH|B Chain B, The Structure Of Human Diamine Oxidase Complexed With An
Inhibitor Aminoguanidine
Length = 731
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 154/562 (27%), Positives = 245/562 (43%), Gaps = 43/562 (7%)
Query: 124 FTFEDQENADKLAFT--YPPFVASIRRRGLKLEEVVCESFSVGWYGAE--EEEGKNKKRI 179
F+F+D + LAFT P VAS +RR + + E + + G E + G
Sbjct: 152 FSFQDCHDR-CLAFTDVAPRGVASGQRRSWLIIQRYVEGYFLHPTGLELLVDHGSTDAGH 210
Query: 180 VKVMCYYMNGTVNLFMRPIEGISMTVDLDEMKIIGFQDRVTVPVPKA---DETE----FR 232
V + NG F E ++ E+ ++ +D P+P D TE F
Sbjct: 211 WAVEQVWYNGK---FYGSPEELARKYADGEVDVVVLED----PLPGGKGHDSTEEPPLFS 263
Query: 233 ESKIKPPFRQSL--KAITVVQPDGPSFTIDGHMIRWADWEFHLSFDVRAGMIISLASIYD 290
K + F + +VQP GP F ++G+ + + W F +F +R+ + + +++
Sbjct: 264 SHKPRGDFPSPIHVSGPRLVQPHGPRFRLEGNAVLYGGWSF--AFRLRSSSGLQVLNVH- 320
Query: 291 LEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFFDAGEYGYGLCSMTLEPLRDCPPNAV 350
R+ Y+ V E Y T + + D G +G G + L P DCP A
Sbjct: 321 ---FGGERIAYEVSVQEAVALYGGHTPAGMQTKYLDVG-WGLGSVTHELAPGIDCPETAT 376
Query: 351 FMDAYFSKQDGMPRKIPKAFCIFERYAGDIMWRHTEATIPGK-TVREVRQDVSLVVRTVS 409
F+D + P P+A C+FE G + RH + G + LV+RT S
Sbjct: 377 FLDTFHYYDADDPVHYPRALCLFEMPTGVPLRRHFNSNFKGGFNFYAGLKGQVLVLRTTS 436
Query: 410 TFGNYDYVNDWEFKQSGSIKVTVGLTGMVQVRGTTYTHKDHMEEDVYGTLVAENSIAIHH 469
T N DY+ D+ F +G ++ + TG V T YT E +GT + + I H
Sbjct: 437 TVYNXDYIWDFIFYPNGVMEAKMHATGYVHA--TFYT----PEGLRHGTRLHTHLIGNIH 490
Query: 470 DHFLTYRLDLDVDGDANSFVRSKLRTTRVNDRRSSRKSYW--TVDSKTAKTESDARIKLG 527
H + YR+DLDV G NSF +++ + + S R T++ E A +
Sbjct: 491 THLVHYRVDLDVAGTKNSFQTLQMKLENITNPWSPRHRVVQPTLEQTQYSWERQAAFRFK 550
Query: 528 SE-PAELLFVNPNKKTKMGNLIGYRLIPEGVTGALLSSDDHPQIRAAFTNYNVWVTAYNK 586
+ P LLF +P ++ G+ YRL + +L + + Y + VT Y +
Sbjct: 551 RKLPKYLLFTSP-QENPWGHKRSYRLQIHSMADQVLPPGWQEEQAITWARYPLAVTKYRE 609
Query: 587 SEKWAGGLYADQSHGDDTLAV--WSNRNRSIENKDIVLWYTLGFHHVPYQEDFP--VMPT 642
SE + +Y D + + + N +IEN+D+V W T+GF H+P+ ED P P
Sbjct: 610 SELCSSSIYHQNDPWDPPVVFEQFLHNNENIENEDLVAWVTVGFLHIPHSEDIPNTATPG 669
Query: 643 LNGGFELRPSNFFESNPVLKVK 664
+ GF LRP NFF +P L +
Sbjct: 670 NSVGFLLRPFNFFPEDPSLASR 691
>pdb|1TU5|A Chain A, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase
pdb|1TU5|B Chain B, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase
pdb|2PNC|A Chain A, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase In Complex With Clonidine
pdb|2PNC|B Chain B, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase In Complex With Clonidine
Length = 746
Score = 135 bits (340), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 115/417 (27%), Positives = 184/417 (44%), Gaps = 22/417 (5%)
Query: 251 QPDGPSFTIDGHMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFV 310
P GP F++ G+ + + W F +G ++D+ + Q R+ Y+ + E
Sbjct: 300 HPQGPRFSVQGNRVASSLWTFSFGLGAFSG-----PRVFDV-RFQGERLAYEISLQEAGA 353
Query: 311 PYMDLTEEWQRRTFFDAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPKAF 370
Y T + D+G +G G + L DCP A +MD +F + P+ + AF
Sbjct: 354 VYGGNTPAAMLTRYMDSG-FGMGYFATPLIRGVDCPYLATYMDWHFVVESQTPKTLHDAF 412
Query: 371 CIFERYAGDIMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEFKQSGSIKV 430
C+FE+ G + RH + V Q V LV R+VST N DYV D F +G+I+V
Sbjct: 413 CVFEQNKGLPLRRHHSDFL-SHYFGGVAQTV-LVFRSVSTMLNXDYVWDMVFYPNGAIEV 470
Query: 431 TVGLTGMVQVRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVR 490
+ TG + + YG V E+++ H H Y++DLDV G N
Sbjct: 471 KLHATGYISSAFLFGAARR------YGNQVGEHTLGPVHTHSAHYKVDLDVGGLENWVWA 524
Query: 491 SKLR--TTRVNDRRSSRKSYWTVDSKTAKTESDARIKLGSEPAELLFVNPNKKTKMGNLI 548
+ T + + V K +TE A LG L++ + K G+
Sbjct: 525 EDMAFVPTAIPWSPEHQIQRLQVTRKQLETEEQAAFPLGGASPRYLYLASKQSNKWGHPR 584
Query: 549 GYRLIPEGVTGALLSSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDDTLAVW 608
GYR+ G + + + ++ Y + +T ++E + ++ T+ +
Sbjct: 585 GYRIQTVSFAGGPMPQNSPMERAFSWGRYQLAITQRKETEPSSSSVFNQNDPWTPTVD-F 643
Query: 609 SN--RNRSIENKDIVLWYTLGFHHVPYQEDFPVMPTL-NG-GFELRPSNFFESNPVL 661
S+ N +I KD+V W T GF H+P+ ED P T+ NG GF LRP NFF+ P +
Sbjct: 644 SDFINNETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDQEPSM 700
>pdb|3PGB|A Chain A, Crystal Structure Of Aspergillus Nidulans Amine Oxidase
Length = 797
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 115/447 (25%), Positives = 198/447 (44%), Gaps = 44/447 (9%)
Query: 222 PVPKADETEFRESKIKPPFRQSLKAITVVQPDGPSFTIDGH--MIRWADWEFHLSFDVRA 279
PVP D + +PP ++ PDG +++D + W D+ F+++F+
Sbjct: 318 PVPPQD-------RKQPP--------VMIAPDGARYSVDAERKYVTWMDFSFYIAFNRDT 362
Query: 280 GMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFFDAGEYGYGLCSMTL 339
G+ S++D+ K + +RVLY+ + E Y + Q + YG+G + L
Sbjct: 363 GL-----SLFDI-KYKGQRVLYELGLQEALAHYA-ANDPVQSSVAYLDSYYGFGPYAFEL 415
Query: 340 EPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGDIMWRHTEATIPGKTVREVRQ 399
DCP A +++ F K + + + C+FE A M RH+ + V +
Sbjct: 416 LKGYDCPSYASYLNTSFYKDEETHTHV-DSLCLFEFDADYPMARHSTSEF-----VSVTK 469
Query: 400 DVSLVVRTVSTFGNYDYVNDWEFKQSGSIKVTVGLTGMVQVRGTTYTHKDHMEEDVYGTL 459
+V +R+VST GN DY+ + F G+I V V +G +Q + Y + +G
Sbjct: 470 NVYFTLRSVSTIGNXDYMFSYNFHMDGTIGVEVRASGYIQ---SAY----YANNQDFGYQ 522
Query: 460 VAENSIAIHHDHFLTYRLDLDVDGDANS--FVRSKLRTTRVNDRRSSRKSYWTVDSKTAK 517
+ ++ HDH L ++ D D+ G N+ V T + + + ++ +
Sbjct: 523 IHDSLSGSMHDHVLNFKADFDILGPNNTIELVSVVPVTKQFSWSGNKTRNTMQLGRSFIH 582
Query: 518 TESDARIKLG-SEPAELLFVNPNKKTKMGNLIGYRLIPEGVTGALLSSDDHPQIRAA-FT 575
+E +AR+ G + +L VN +K K G GYR++P T L + + AA +
Sbjct: 583 SEDEARLNWGFNGQTQLHVVNQDKPNKFGEPRGYRILPSAGTAHLTVLNSSNLVHAAHWA 642
Query: 576 NYNVWVTAYNKSEKWAGGLYADQSHGDDTLAVWSNRN-RSIENKDIVLWYTLGFHHVPYQ 634
Y+V VT + E + Y Q + + + N S+ D+V+W LG HHVP+
Sbjct: 643 EYDVQVTRQHDFEPTSAHPYNSQDIHNPPVDFSTFFNGESLNQTDLVVWLNLGMHHVPHT 702
Query: 635 EDFP--VMPTLNGGFELRPSNFFESNP 659
D P V T + G P N+ +P
Sbjct: 703 GDLPNTVFTTAHSGVAFTPLNYLPGDP 729
>pdb|1US1|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1US1|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|2Y73|A Chain A, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y73|B Chain B, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y74|A Chain A, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
pdb|2Y74|B Chain B, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
Length = 763
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 117/420 (27%), Positives = 186/420 (44%), Gaps = 34/420 (8%)
Query: 252 PDGPSFTIDGHMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVP 311
P GP F++ G + + W F +G I+D+ + Q R++Y+ + E
Sbjct: 318 PQGPRFSVQGSRVASSLWTFSFGLGAFSG-----PRIFDV-RFQGERLVYEISLQEALAI 371
Query: 312 YMDLTEEWQRRTFFDAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFC 371
Y + + D G +G G + L DCP A ++D +F + P+ I AFC
Sbjct: 372 YGGNSPAAMTTRYVDGG-FGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAFC 430
Query: 372 IFERYAGDIMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEFKQSGSIKVT 431
+FE+ G + RH + + + + V LVVR++ST N DYV D F SG+I++
Sbjct: 431 VFEQNQGLPLRRH-HSDLYSHYFGGLAETV-LVVRSMSTLLNXDYVWDTVFHPSGAIEIR 488
Query: 432 VGLTGMVQ---VRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDAN-- 486
TG + + G T YG V+E+++ H H +++DLDV G N
Sbjct: 489 FYATGYISSAFLFGAT---------GKYGNQVSEHTLGTVHTHSAHFKVDLDVAGLENWV 539
Query: 487 ---SFVRSKLRTTRVNDRRSSRKSYWTVDSKTAKTESDARIKLGSEPAELLFVNPNKKTK 543
V + + + R V K + E A +GS L++ N K
Sbjct: 540 WAEDMVFVPMAVPWSPEHQLQRLQ---VTRKLLEMEEQAAFLVGSATPRYLYLASNHSNK 596
Query: 544 MGNLIGYRLIPEGVTGALLSSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDD 603
G+ GYR+ G L + ++ Y + VT + E + ++
Sbjct: 597 WGHPRGYRIQMLSFAGEPLPQNSSMARGFSWERYQLAVTQRKEEEPSSSSVFNQNDPWAP 656
Query: 604 TLAVWSN--RNRSIENKDIVLWYTLGFHHVPYQEDFPVMPTL-NG-GFELRPSNFFESNP 659
T+ +S+ N +I KD+V W T GF H+P+ ED P T+ NG GF LRP NFF+ +P
Sbjct: 657 TVD-FSDFINNETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDP 715
>pdb|3ALA|A Chain A, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|B Chain B, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|C Chain C, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|D Chain D, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|E Chain E, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|F Chain F, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|G Chain G, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
Length = 748
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 117/420 (27%), Positives = 186/420 (44%), Gaps = 34/420 (8%)
Query: 252 PDGPSFTIDGHMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVP 311
P GP F++ G + + W F +G I+D+ + Q R++Y+ + E
Sbjct: 303 PQGPRFSVQGSRVASSLWTFSFGLGAFSG-----PRIFDV-RFQGERLVYEISLQEALAI 356
Query: 312 YMDLTEEWQRRTFFDAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFC 371
Y + + D G +G G + L DCP A ++D +F + P+ I AFC
Sbjct: 357 YGGNSPAAMTTRYVDGG-FGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAFC 415
Query: 372 IFERYAGDIMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEFKQSGSIKVT 431
+FE+ G + RH + + + + V LVVR++ST N DYV D F SG+I++
Sbjct: 416 VFEQNQGLPLRRH-HSDLYSHYFGGLAETV-LVVRSMSTLLNXDYVWDTVFHPSGAIEIR 473
Query: 432 VGLTGMVQ---VRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDAN-- 486
TG + + G T YG V+E+++ H H +++DLDV G N
Sbjct: 474 FYATGYISSAFLFGAT---------GKYGNQVSEHTLGTVHTHSAHFKVDLDVAGLENWV 524
Query: 487 ---SFVRSKLRTTRVNDRRSSRKSYWTVDSKTAKTESDARIKLGSEPAELLFVNPNKKTK 543
V + + + R V K + E A +GS L++ N K
Sbjct: 525 WAEDMVFVPMAVPWSPEHQLQRLQ---VTRKLLEMEEQAAFLVGSATPRYLYLASNHSNK 581
Query: 544 MGNLIGYRLIPEGVTGALLSSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDD 603
G+ GYR+ G L + ++ Y + VT + E + ++
Sbjct: 582 WGHPRGYRIQMLSFAGEPLPQNSSMARGFSWERYQLAVTQRKEEEPSSSSVFNQNDPWAP 641
Query: 604 TLAVWSN--RNRSIENKDIVLWYTLGFHHVPYQEDFPVMPTL-NG-GFELRPSNFFESNP 659
T+ +S+ N +I KD+V W T GF H+P+ ED P T+ NG GF LRP NFF+ +P
Sbjct: 642 TVD-FSDFINNETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDP 700
>pdb|2C10|A Chain A, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|B Chain B, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|C Chain C, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|D Chain D, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|A Chain A, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|B Chain B, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|C Chain C, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|D Chain D, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
Length = 735
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 117/420 (27%), Positives = 186/420 (44%), Gaps = 34/420 (8%)
Query: 252 PDGPSFTIDGHMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVP 311
P GP F++ G + + W F +G I+D+ + Q R++Y+ + E
Sbjct: 290 PQGPRFSVQGSRVASSLWTFSFGLGAFSG-----PRIFDV-RFQGERLVYEISLQEALAI 343
Query: 312 YMDLTEEWQRRTFFDAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFC 371
Y + + D G +G G + L DCP A ++D +F + P+ I AFC
Sbjct: 344 YGGNSPAAMTTRYVDGG-FGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAFC 402
Query: 372 IFERYAGDIMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEFKQSGSIKVT 431
+FE+ G + RH + + + + V LVVR++ST N DYV D F SG+I++
Sbjct: 403 VFEQNQGLPLRRH-HSDLYSHYFGGLAETV-LVVRSMSTLLNXDYVWDTVFHPSGAIEIR 460
Query: 432 VGLTGMVQ---VRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDAN-- 486
TG + + G T YG V+E+++ H H +++DLDV G N
Sbjct: 461 FYATGYISSAFLFGAT---------GKYGNQVSEHTLGTVHTHSAHFKVDLDVAGLENWV 511
Query: 487 ---SFVRSKLRTTRVNDRRSSRKSYWTVDSKTAKTESDARIKLGSEPAELLFVNPNKKTK 543
V + + + R V K + E A +GS L++ N K
Sbjct: 512 WAEDMVFVPMAVPWSPEHQLQRLQ---VTRKLLEMEEQAAFLVGSATPRYLYLASNHSNK 568
Query: 544 MGNLIGYRLIPEGVTGALLSSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDD 603
G+ GYR+ G L + ++ Y + VT + E + ++
Sbjct: 569 WGHPRGYRIQMLSFAGEPLPQNSSMARGFSWERYQLAVTQRKEEEPSSSSVFNQNDPWAP 628
Query: 604 TLAVWSN--RNRSIENKDIVLWYTLGFHHVPYQEDFPVMPTL-NG-GFELRPSNFFESNP 659
T+ +S+ N +I KD+V W T GF H+P+ ED P T+ NG GF LRP NFF+ +P
Sbjct: 629 TVD-FSDFINNETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDP 687
>pdb|1N9E|A Chain A, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|B Chain B, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|C Chain C, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|D Chain D, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
Length = 787
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 114/456 (25%), Positives = 197/456 (43%), Gaps = 36/456 (7%)
Query: 217 DRVTVPVPKADETEFR--ESKIKPPFRQ--SLKAITVVQPDGPSFTIDGH--MIRWADWE 270
D VT+P D ++ + P R K+ +V+P+G + DG W DW
Sbjct: 289 DFVTLPKIDVDNLDWTVIQRNDSAPIRHLDDRKSPRLVEPEGRRWAYDGEEEYFSWMDWG 348
Query: 271 FHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFFDAGEY 330
F+ S+ G+ S YD+ + R++Y+ + E+ Y + + + TF+ Y
Sbjct: 349 FYTSWSRDTGI-----SFYDI-TFKGERIVYELSLQELIAEYGS-DDPFNQHTFYSDISY 401
Query: 331 GYGLCSMTLEPLRDCPPNA-VFMDAYFSKQDGMPRKIPKAFCIFERYAGDIMWRHTEATI 389
G G +L P DCP A F F + R + ++C+FE + RHT
Sbjct: 402 GVG-NRFSLVPGYDCPATAGYFTTDTFEYDEFYNRTL--SYCVFENQEDYSLLRHT---- 454
Query: 390 PGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEFKQSGSIKVTVGLTGMVQVRGTTYTHKD 449
G + + Q+ +L VR +ST GN DY ++F G+++V+V G +Q + +
Sbjct: 455 -GASYSAITQNPTLNVRFISTIGNXDYNFLYKFFLDGTLEVSVRAAGYIQA-----GYWN 508
Query: 450 HMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRTTRVNDRRSSRKSYW 509
YG + + HDH L Y++DLDV G N + ++ V + Y
Sbjct: 509 PETSAPYGLKIHDVLSGSFHDHVLNYKVDLDVGGTKNRASKYVMKDVDVEYPWAPGTVYN 568
Query: 510 T--VDSKTAKTESDARIKLGSEPAELLFVNPNKKTK-MGNLIGYRLIPEG--VTGALLSS 564
T + + + E I +L + ++T GN Y ++P G V + +S
Sbjct: 569 TKQIAREVLEKEDFNGINWPENGQGILLIESAEETNSFGNPRAYNIMPGGGGVHRIVKNS 628
Query: 565 DDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDDTLAVWSN-RNRSIENKDIVLW 623
P+ + + N+++T + E + + D + + + S++ +DIV W
Sbjct: 629 RSGPETQN-WARSNLFLTKHKDEELRSSTALNTNALYDPPVNFNAFLDDESLDGEDIVAW 687
Query: 624 YTLGFHHVPYQEDFP--VMPTLNGGFELRPSNFFES 657
LG HH+P D P + T + F L P N+F+S
Sbjct: 688 VNLGLHHLPNSNDLPNTIFSTAHASFMLTPFNYFDS 723
>pdb|1RKY|A Chain A, Pplo + Xe
pdb|1W7C|A Chain A, Pplo At 1.23 Angstroms
Length = 747
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 115/463 (24%), Positives = 199/463 (42%), Gaps = 50/463 (10%)
Query: 217 DRVTVPVPKADETEFR--ESKIKPPFRQ--SLKAITVVQPDGPSFTIDG--HMIRWADWE 270
D VT+P D ++ + P R K+ +V+P+G + DG W DW
Sbjct: 249 DFVTLPKIDVDNLDWTVIQRNDSAPVRHLDDRKSPRLVEPEGRRWAYDGDEEYFSWMDWG 308
Query: 271 FHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFFDAGEY 330
F+ S+ G+ S YD+ + R++Y+ + E+ Y + + + TF+ Y
Sbjct: 309 FYTSWSRDTGI-----SFYDI-TFKGERIVYELSLQELIAEYGS-DDPFNQHTFYSDISY 361
Query: 331 GYGLCSMTLEPLRDCPPNA-VFMDAYFSKQDGMPRKIPKAFCIFERYAGDIMWRHTEATI 389
G G +L P DCP A F F + R + ++C+FE + RHT
Sbjct: 362 GVG-NRFSLVPGYDCPSTAGYFTTDTFEYDEFYNRTL--SYCVFENQEDYSLLRHT---- 414
Query: 390 PGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEFKQSGSIKVTVGLTGMVQVRGTTYTHKD 449
G + + Q+ +L VR +ST GN DY ++F G+++V+V G +Q + +
Sbjct: 415 -GASYSAITQNPTLNVRFISTIGNXDYNFLYKFFLDGTLEVSVRAAGYIQA-----GYWN 468
Query: 450 HMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRTTRV----------N 499
YG + + HDH L Y++DLDV G N + ++ V N
Sbjct: 469 PETSAPYGLKIHDVLSGSFHDHVLNYKVDLDVGGTKNRASQYVMKDVDVEYPWAPGTVYN 528
Query: 500 DRRSSRKSYWTVDSKTAKTESDARIKLGSEPAELLFVNPNKKTKMGNLIGYRLIPEG--V 557
++ +R+ + D + + L E AE + GN Y ++P G V
Sbjct: 529 TKQIAREVFENEDFNGINWPENGQGILLIESAE-------ETNSFGNPRAYNIMPGGGGV 581
Query: 558 TGALLSSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDDTLAVWSN-RNRSIE 616
+ +S P+ + + N+++T + +E + + D + + + S++
Sbjct: 582 HRIVKNSRSGPETQN-WARSNLFLTKHKDTELRSSTALNTNALYDPPVNFNAFLDDESLD 640
Query: 617 NKDIVLWYTLGFHHVPYQEDFP--VMPTLNGGFELRPSNFFES 657
+DIV W LG HH+P D P + T + F L P N+F+S
Sbjct: 641 GEDIVAWVNLGLHHLPNSNDLPNTIFSTAHASFMLTPFNYFDS 683
>pdb|2YLH|A Chain A, Structure Of N-Terminal Domain Of Candida Albicans Als9-2
G299w Mutant
Length = 312
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 58/161 (36%), Gaps = 17/161 (10%)
Query: 54 THKLTFQYVGLEEPSKQTVISWLKNETTTNPPRQAFVI--ARIDHQTHELIVDLSLQEIA 111
T + + Y G E P+ V+ W N TT +P +I T + VDL+ ++
Sbjct: 17 TRSVEYAYKGPETPTWNAVLGWSLNSTTADPGDTFTLILPCVFKFITTQTSVDLTADGVS 76
Query: 112 SKRIYSGYGYPMFTFEDQENADKLAFTYPPFVASIRRRGLKLEEVVCESFSVGWYGAEEE 171
G TF L+ T S R ++ + +F+VG G+ +
Sbjct: 77 YATCDFNAGEEFTTFS------SLSCTVNSVSVSYARVSGTVKLPI--TFNVGGTGSSVD 128
Query: 172 EGKNKKRIVKVMCYYMNGTVNLFMRPIEGISMTVDLDEMKI 212
+K C+ FM IS TVD D +
Sbjct: 129 LADSK-------CFTAGKNTVTFMDGDTKISTTVDFDASPV 162
>pdb|3UZ0|A Chain A, Crystal Structure Of Spoiiiah And Spoiiq Complex
pdb|3UZ0|C Chain C, Crystal Structure Of Spoiiiah And Spoiiq Complex
Length = 133
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 457 GTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRTTRVNDRRSSRKSYWTVDSKTA 516
GT+V E + D F TYRLDL+ DA S R +L +D ++++ D TA
Sbjct: 9 GTVVTETA---DDDLFTTYRLDLE---DARSKEREELNAIVSSDDATAKEKSEAYDKXTA 62
Query: 517 KTESDARIK 525
+E + K
Sbjct: 63 LSEVEGTEK 71
>pdb|1Z1E|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea
pdb|1Z1F|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea (Resveratrol-Bound Form)
Length = 390
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 516 AKTESDARIKL-GSEPAELLFVNPNKKTKMGNLIGYRLIPEGVTGALLSSDDHPQI 570
A+ DAR+ + SE + F P++ T M +L+G L +G ++ SD P++
Sbjct: 179 AENNKDARVLIVCSENTSVTFRGPSE-TDMDSLVGQALFADGAAAIIIGSDPVPEV 233
>pdb|2YFN|A Chain A, Galactosidase Domain Of Alpha-Galactosidase-Sucrose
Kinase, Agask
pdb|2YFO|A Chain A, Galactosidase Domain Of Alpha-Galactosidase-Sucrose
Kinase, Agask, In Complex With Galactose
Length = 720
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 542 TKMGNLIGYRLIPEGVTGALLSSDDHPQIRAAFTNYNVWVTAYNKSEKW 590
T M GY L P ALLS ++ QIR Y + T N+ W
Sbjct: 587 TAMAGTFGYELNP-----ALLSDEEKQQIREQIKTYKKYETLINEGTYW 630
>pdb|3TUF|A Chain A, Structure Of The Spoiiq-Spoiiiah Pore Forming Complex
Length = 197
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 457 GTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRTTRVNDRRSSRKSYWTVDSKTA 516
GT+V E + D F TYRLDL+ DA S R +L +D ++++ D TA
Sbjct: 73 GTVVTETA---DDDLFTTYRLDLE---DARSKEREELNAIVSSDDATAKEKSEAYDKMTA 126
Query: 517 KTE 519
+E
Sbjct: 127 LSE 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,159,166
Number of Sequences: 62578
Number of extensions: 909672
Number of successful extensions: 1980
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1760
Number of HSP's gapped (non-prelim): 39
length of query: 672
length of database: 14,973,337
effective HSP length: 105
effective length of query: 567
effective length of database: 8,402,647
effective search space: 4764300849
effective search space used: 4764300849
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)