Query 005872
Match_columns 672
No_of_seqs 161 out of 716
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 15:00:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005872.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005872hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11504 tynA tyramine oxidase 100.0 6E-188 1E-192 1576.3 71.9 623 24-669 10-637 (647)
2 PLN02566 amine oxidase (copper 100.0 7E-185 2E-189 1551.0 71.7 622 26-662 20-646 (646)
3 PRK14696 tynA tyramine oxidase 100.0 6E-184 1E-188 1556.1 71.6 627 24-668 84-721 (721)
4 COG3733 TynA Cu2+-containing a 100.0 2E-180 4E-185 1436.8 59.3 620 26-668 28-654 (654)
5 KOG1186 Copper amine oxidase [ 100.0 1E-159 3E-164 1313.6 54.8 631 24-668 24-657 (670)
6 PF01179 Cu_amine_oxid: Copper 100.0 6E-141 1E-145 1152.2 37.3 410 246-668 1-413 (413)
7 PF02728 Cu_amine_oxidN3: Copp 99.9 4.3E-22 9.4E-27 178.9 9.4 99 122-224 1-101 (101)
8 PF02727 Cu_amine_oxidN2: Copp 99.8 1.6E-19 3.5E-24 157.8 4.0 85 28-115 1-85 (86)
9 PF09248 DUF1965: Domain of un 61.3 6.2 0.00013 34.0 2.2 29 191-220 2-35 (74)
10 PF04270 Strep_his_triad: Stre 31.7 26 0.00056 28.4 1.2 19 29-47 34-52 (53)
11 PF02728 Cu_amine_oxidN3: Copp 30.1 13 0.00028 33.4 -0.8 80 32-115 2-93 (101)
No 1
>PRK11504 tynA tyramine oxidase; Provisional
Probab=100.00 E-value=5.9e-188 Score=1576.28 Aligned_cols=623 Identities=34% Similarity=0.598 Sum_probs=586.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEccCCCHHHHHhhhhcCCCCCCCCEEEEEEEe--CCeeEEE
Q 005872 24 SHQYHPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETTTNPPRQAFVIARI--DHQTHEL 101 (672)
Q Consensus 24 ~~~~HPldpLt~~Ei~~a~~~v~~~~~~~~~~~~~f~~I~L~eP~K~~vl~~l~~~~~~~p~R~A~vvi~~--~~~~~E~ 101 (672)
....|||||||++||++|++|||++.+. ...++|.+|+|.||+|++|++|+.++ +++|+|+|++++ ++.++|+
T Consensus 10 ~~~~HPLdpLt~~Ei~~a~~iv~~~~~~--~~~~~F~~i~L~EP~K~~v~~~~~g~---~~~R~a~v~~~~~~~~~~~e~ 84 (647)
T PRK11504 10 AAVSHPLDPLTAAEIEAAVAILRAEGLL--GESTRFVSIELAEPPKAEVLAFDPGD---PIDRRAFVVLYDRATGKTYEA 84 (647)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcccc--CCceEEEEeeccCCCHHHHHhhhcCC---CCCcEEEEEEEECCCCcEEEE
Confidence 3456999999999999999999998763 25789999999999999999999875 247999999996 5679999
Q ss_pred EEeCCCCeEEEEEeeCCCCCCCCCHHHHHHHHHHhhcCchHHHHHHHhCC-CCcceEEccccccccCCccccCCCCceEE
Q 005872 102 IVDLSLQEIASKRIYSGYGYPMFTFEDQENADKLAFTYPPFVASIRRRGL-KLEEVVCESFSVGWYGAEEEEGKNKKRIV 180 (672)
Q Consensus 102 vV~l~~~~v~~~~~~~~~~~p~~~~ee~~~~e~~~~~~p~~~~a~~~~g~-~~~~v~~d~~~~G~~~~~~~~~~~~~R~~ 180 (672)
+|||+.++|++++.++ ++||+++.||+.+||++|++||+|++||+|||| ++++|+||||++|||+.+++. ++|++
T Consensus 85 vVdL~~~~V~~~~~~~-~~~p~~~~~e~~~~e~~~~~dp~~~~ai~~rgl~~~~~V~~dpw~~G~~~~~~~~---~~Rl~ 160 (647)
T PRK11504 85 VVSLTAGEVVSWEEIP-GVQPPILLEEFEECEEVVRADPRWQAALAKRGITDFDLVMVDPWSAGYFGEPEER---GRRLA 160 (647)
T ss_pred EEECCCCEEEEEEECC-CccCCcCHHHHHHHHHHHhcCHHHHHHHHHcCCCCcceEEEcCccccccCCCCcC---CceEE
Confidence 9999999999999987 569999999999999999999999999999999 579999999999998865433 68999
Q ss_pred EEEEEEe-cCCCCCccCCcCCcEEEEecCccEEEEEeCCceeecCCCCCCCCccccCCCCCCCCCCCceeeCCCCCeEEE
Q 005872 181 KVMCYYM-NGTVNLFMRPIEGISMTVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKPPFRQSLKAITVVQPDGPSFTI 259 (672)
Q Consensus 181 ~~~~f~~-~~~~n~ya~Pl~gl~~~vD~~~~kv~~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~lkp~~i~QPeG~sf~v 259 (672)
|++||+| ++++|+|||||+||+++||+++|||++|+|.+..|+|+.+ .+|.++.++ +.|+++||++|+||||+||+|
T Consensus 161 ~~~~~~r~~~~~n~Ya~Pi~G~~~vvDl~~~~vv~i~d~g~~p~p~~~-~~Y~~~~~~-~~r~dlkPl~i~QPeG~sF~v 238 (647)
T PRK11504 161 RGLAFVRADPGDNGYARPIEGLVAVVDLNTMEVLRVEDHGVVPIPAED-GNYDPEFIP-PLRTDLKPLEITQPEGPSFTV 238 (647)
T ss_pred EEEEEEecCCCccccccccCceEEEEECCCCEEEEEecCCCCCCCCCC-CCCChhHcc-ccccCCCCcceeCCCCCcEEE
Confidence 9999999 5899999999999999999999999999998877777765 599988764 679999999999999999999
Q ss_pred eceEEeeeceEEEEeeeCCCceeEEeeEEeccCCCceeEEEEeeeeeeEEeecCCCCccccccceeecCCCCCCcCccCC
Q 005872 260 DGHMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFFDAGEYGYGLCSMTL 339 (672)
Q Consensus 260 ~g~~V~w~~W~f~~~f~~reGlvL~~v~~~D~r~~~~r~v~yrlsl~Em~VpY~dp~~~~~~k~~fD~ge~G~G~~a~~L 339 (672)
+|++|+||||+||+|||+|||||||||+|+| .|++|||+||+|||||+||||||+++|++|+|||+||||+|.+||+|
T Consensus 239 ~g~~V~W~~W~f~vgf~~reGlvL~dv~y~d--~g~~R~v~YrlslsEm~VPYgdp~p~~~~k~~fD~GeyG~G~~an~L 316 (647)
T PRK11504 239 DGNEVEWQKWSFRVGFNPREGLVLHQVSYDD--GGRERPILYRASLSEMVVPYGDPSPTHYWKNAFDAGEYGLGRLANSL 316 (647)
T ss_pred cCCEEEECCcEEEEecCCCCceEEEEEEEcC--CCCcceEEEEeeeeeeeeecCCCCcchhhceeeeccccCCccccccc
Confidence 9999999999999999999999999999998 67889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcEEeeeEEecCCCCeeeeCceEEEEEecCCCceeeecccCCCCeeEeeeeeceEEEEEEeEeecccceEEE
Q 005872 340 EPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGDIMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVND 419 (672)
Q Consensus 340 ~~G~DCpg~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~~r~~~~LVvr~i~TVgNYdYi~~ 419 (672)
++||||||+|+|||+++++++|+|++++|||||||+| +|+||||++++++..+++|+| +||||+|+|||||||||+
T Consensus 317 ~lGcDCpg~i~Y~D~~~~~~~G~p~~~~naICihE~D-~GilwkHt~~r~~~~~v~r~r---~LVvr~I~TVgNYdYi~~ 392 (647)
T PRK11504 317 ELGCDCLGEIRYFDAVLADSDGEPYTIKNAICMHEED-YGILWKHTDFRTGSAEVRRSR---RLVISFFATVGNYDYGFY 392 (647)
T ss_pred ccCCCCCCCCEEcceEEecCCCCeEEecCEEEEeeec-CCeeeeeeccCCCcEEEEecc---EEEEEEEEecccccEEEE
Confidence 9999999999999999999999999999999999999 889999999998766655555 999999999999999999
Q ss_pred EEEeeCccEEEEEeEeeeeeeeeeeeccCCCCccccccceeccCccccccceeEEeeeecCCCCCCCceEEEEEEEeecC
Q 005872 420 WEFKQSGSIKVTVGLTGMVQVRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRTTRVN 499 (672)
Q Consensus 420 w~F~~dG~Ie~~v~aTGil~~~~~~~~~~~~~~~~~yGt~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~ 499 (672)
|+|||||+||++|+|||||++++.. ++++.+|||+|+|+++|++|||+|||||||||||.+|||+++|+++++..
T Consensus 393 w~F~qdG~Ie~eV~aTGil~t~~~~-----~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIDG~~Nsv~~~d~~~~p~~ 467 (647)
T PRK11504 393 WYFYQDGTIEFEVKLTGIVFTAAVP-----PGETPPYGTLVAPGLYAPNHQHFFNARLDMDVDGPGNSVYEVNSVPVPMG 467 (647)
T ss_pred EEEecCceEEEEEEeeeEEEeeeeC-----CCccCCCcceecCCcccccceEEEEEEEcccccCCCceEEEEEeEecCCC
Confidence 9999999999999999999986541 22346899999999999999999999999999999999999999999886
Q ss_pred CCCCCcceeEEEEEEeecChhhhhhhcCC-CCcEEEEecCCCCCCCCCceeEEEeeCCccccCCCCCChhhhccccccce
Q 005872 500 DRRSSRKSYWTVDSKTAKTESDARIKLGS-EPAELLFVNPNKKTKMGNLIGYRLIPEGVTGALLSSDDHPQIRAAFTNYN 578 (672)
Q Consensus 500 ~~~~p~~~~~~~~~~~~~te~~a~~~~~~-~~r~~~i~N~~~~n~~G~p~gY~l~p~~~~~~~~~~~s~~~~ra~fa~~~ 578 (672)
++||++++|+++++++++|++|++++++ ++|+|+|+|++++|++|+|+||||+|+++++++++++|+..+||+||+|+
T Consensus 468 -~~np~g~~~~~~~t~l~tE~~a~~~~~~~~~R~~~ivN~~~~N~~G~pvgYkl~p~~~~~~l~~~~s~~~~ra~fa~~~ 546 (647)
T PRK11504 468 -PDNPHGNAFYTRETLLETESEAARDADPSTGRYWKIVNPNKKNRLGEPVAYKLVPGGNPPLLADPGSSIRQRAGFATHH 546 (647)
T ss_pred -CCCccceEEEEEEEEecchhhhhhccCCCCccEEEEECCCCcCCCCCeeeEEEccCCCccccCCCCchhhhcchhhhCc
Confidence 6899999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeCCCCCCCCCcCccCCCCCCChhhhccCCCceecCCeEEEEEeCcccCCCCCCCCccccceeeeEEEeCCCCCCC
Q 005872 579 VWVTAYNKSEKWAGGLYADQSHGDDTLAVWSNRNRSIENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGFELRPSNFFESN 658 (672)
Q Consensus 579 lwVT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~P~nFFd~n 658 (672)
||||+|+|+|+||+|+|++|+.+++||+.|+++||+|+|+|||+|||||+||+||+|||||||++++||+|||+|||++|
T Consensus 547 lwVT~y~d~E~~aag~y~~Qs~~~~gl~~~~~~~~~i~~~DiVlW~t~G~~HvPr~ED~PvMP~~~~gf~L~P~nFF~~N 626 (647)
T PRK11504 547 LWVTPYDPDERYAAGDYPNQSAGGDGLPAYIAADRSIENTDVVLWYTFGITHVPRPEDWPVMPVDYAGFKLKPVGFFDRN 626 (647)
T ss_pred EEEeccCCCccccCCCCcccCCCCCCHHHHhcCCCccccCceEEEEecCcccCCChhhCCCCccceEEEEEEcCCCCCCC
Confidence 99999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCC
Q 005872 659 PVLKVKQPKEE 669 (672)
Q Consensus 659 P~ldvp~~~~~ 669 (672)
|+||+|++++.
T Consensus 627 Paldvp~s~~~ 637 (647)
T PRK11504 627 PALDLPPEPPA 637 (647)
T ss_pred ccccCCCcccc
Confidence 99999999864
No 2
>PLN02566 amine oxidase (copper-containing)
Probab=100.00 E-value=7e-185 Score=1551.02 Aligned_cols=622 Identities=59% Similarity=1.049 Sum_probs=577.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEccCCCHHHHHhhhhcCC--CCCCCCEEEEEEEeCCeeEEEEE
Q 005872 26 QYHPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNET--TTNPPRQAFVIARIDHQTHELIV 103 (672)
Q Consensus 26 ~~HPldpLt~~Ei~~a~~~v~~~~~~~~~~~~~f~~I~L~eP~K~~vl~~l~~~~--~~~p~R~A~vvi~~~~~~~E~vV 103 (672)
..|||||||++||++|++|||++.+. ..+.++|.+|+|.||+|++|++||.++. .+.|+|+|+|++..+++++|++|
T Consensus 20 ~~HPLdpLs~~Ei~~a~~iv~~~~~~-~~~~~~F~~i~L~EP~K~~v~~~~~~~~~~~~~p~R~a~v~~~~~~~~~e~vV 98 (646)
T PLN02566 20 LYHPLDPLNPQEINKIRLIVQKSHLG-NLPNLTFHFLDLEEPEKRDVLKWLSSNPSNKSPPPRRAKVVVRAGGETYELIV 98 (646)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhccC-CCCceEEEEEEccCCChHHHHhhhhcccCCCCCCCcEEEEEEecCCCEEEEEE
Confidence 36999999999999999999998753 1136899999999999999999998753 23468999987766778999999
Q ss_pred eCCCCeEEEEEeeCCCCCCCCCHHHHHHHHHHhhcCchHHHHHHHhCCCCcceEEccccccccCCccccCCCCceEEEEE
Q 005872 104 DLSLQEIASKRIYSGYGYPMFTFEDQENADKLAFTYPPFVASIRRRGLKLEEVVCESFSVGWYGAEEEEGKNKKRIVKVM 183 (672)
Q Consensus 104 ~l~~~~v~~~~~~~~~~~p~~~~ee~~~~e~~~~~~p~~~~a~~~~g~~~~~v~~d~~~~G~~~~~~~~~~~~~R~~~~~ 183 (672)
||+.++|++++.+++.|||+++.||+.+||++|++||+|++||+||||+.++|+||||++|||+. . + ++|++|++
T Consensus 99 dl~~~~v~~~~~~~g~G~p~~~~~e~~~~e~~~~~dp~~~~a~~~rgl~~~~V~~dpw~~G~~~~-~-~---~~R~~q~~ 173 (646)
T PLN02566 99 DLATGSITSSRVYTGHGYPPLTFIELFQASKLPLKYPKFKKSILRRGLNISEVSCIPFTVGWYGE-T-V---TKRALKIS 173 (646)
T ss_pred ECCCCEEEEEEEcCCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHcCCCcceEEEeCcccccCCC-C-C---CcEEEEEE
Confidence 99999999999998777999999999999999999999999999999988889999999999875 2 3 68999999
Q ss_pred EEEecCCCCCccCCcCCcEEEEecCccEEEEEeCCceeecCCCCCCCCccccCCCCCCCCCCCceeeCCC-CCeEEEece
Q 005872 184 CYYMNGTVNLFMRPIEGISMTVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKPPFRQSLKAITVVQPD-GPSFTIDGH 262 (672)
Q Consensus 184 ~f~~~~~~n~ya~Pl~gl~~~vD~~~~kv~~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~lkp~~i~QPe-G~sf~v~g~ 262 (672)
||+|++++|+|||||+||+++||++++||++|+|.+..++|+..+. +.|+++||+.|+||| |+||+|+|+
T Consensus 174 ~y~r~~~~N~Ya~Pl~G~~~vvDl~~~~vi~i~d~~~~p~p~~~~~---------~~R~d~kPl~i~QPegG~sF~v~G~ 244 (646)
T PLN02566 174 CFYRGGSVNVFARPIEGISILIDVDSMQIIKYSDRFRAPLPKAEGT---------DFRTKHKPFSFPCNVSDSGFTILGH 244 (646)
T ss_pred EEEcCCCcccccCccCCcEEEEECCCCEEEEEECCCCCccCCCCCC---------CCCcCCCCccccCCCCCCcEEEcCC
Confidence 9999889999999999999999999999999998765566664331 368999999999999 599999999
Q ss_pred EEeeeceEEEEeeeCCCceeEEeeEEeccCCCceeEEEEeeeeeeEEeecCCCCccccccceeecCCCCCCcCccCCCCC
Q 005872 263 MIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFFDAGEYGYGLCSMTLEPL 342 (672)
Q Consensus 263 ~V~w~~W~f~~~f~~reGlvL~~v~~~D~r~~~~r~v~yrlsl~Em~VpY~dp~~~~~~k~~fD~ge~G~G~~a~~L~~G 342 (672)
+|+||||+||+|||+|||||||||+|+|++++++||||||+|||||+||||||+++|++|+|||+||||+|.+|++|++|
T Consensus 245 ~V~W~~W~f~vgf~~reGlvL~~v~~~D~~~~~~R~v~YrlSlsEm~VPYgDP~~~~~~k~~fD~GeyG~G~~a~~L~lG 324 (646)
T PLN02566 245 RVKWANWDFHVGFDARAGVTISTASVFDAKVKRFRRVLYRGHVSETFVPYMDPTSEWYFRTFMDIGEFGFGRSAVTLQPL 324 (646)
T ss_pred EEEecCcEEEEecCCCcceEEEeEEEeccCCCcceeEEEEeeeeeeEEecCCCCccccccceeeccccCccccccccccC
Confidence 99999999999999999999999999999887789999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEeeeEEecCCCCeeeeCceEEEEEecCCCceeeecccCCCCeeEeeeeeceEEEEEEeEeecccceEEEEEE
Q 005872 343 RDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGDIMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEF 422 (672)
Q Consensus 343 ~DCpg~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~~r~~~~LVvr~i~TVgNYdYi~~w~F 422 (672)
|||||+|+|||+++++++|+|++++|||||||+|.|||||||++++..+..++.++.+++||||+|+|||||||||+|+|
T Consensus 325 cDCpg~i~YlD~~~~~~~G~p~~~~NaICihE~D~GgilwkHt~~~~~~~~~r~g~~~~~LVvr~I~TVgNYDYif~w~F 404 (646)
T PLN02566 325 IDCPANAVYLDGYVAGADGQAQKMTNVICIFERYSGDVAFRHTEINVPGRVIRSGEPEISLVVRMVATLGNYDYILDWEF 404 (646)
T ss_pred CCCCCCcEEeeeEEecCCCCEEEecCEEEEEeecCCccceeeccCCCCccccccCcceEEEEEEEEEEeecccEEEEEEE
Confidence 99999999999999999999999999999999997799999999987665556677888999999999999999999999
Q ss_pred eeCccEEEEEeEeeeeeeeeeeeccCCCCccccccceeccCccccccceeEEeeeecCCCCCCCceEEEEEEEeecCC--
Q 005872 423 KQSGSIKVTVGLTGMVQVRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRTTRVND-- 500 (672)
Q Consensus 423 ~~dG~Ie~~v~aTGil~~~~~~~~~~~~~~~~~yGt~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~~-- 500 (672)
||||+||+||+|||||+|+++.|......+..+|||+|+|+++|++|||+|||||||||||.+|||+++|+++++...
T Consensus 405 ~qdGtIe~eV~aTGil~t~~~~~~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG~~Nsv~~~~~~~~~~~~~~ 484 (646)
T PLN02566 405 KKSGSIKVGVDLTGVLEMKATSYTNNDQITKDVYGTLVAENTIAVNHDHFLTYYLDLDVDGNGNSFVKAKLQTARVTAVN 484 (646)
T ss_pred ecCceEEEEEEeEEEEEecccccccccccccCCCccEecCCcccccceEEEEEEEcccccCCCCeEEEEeeEEccCCCCC
Confidence 999999999999999999887664322122368999999999999999999999999999999999999999976543
Q ss_pred CCCCcceeEEEEEEeecChhhhhhhcCCCCcEEEEecCCCCCCCCCceeEEEeeCCccccCCCCCChhhhccccccceEE
Q 005872 501 RRSSRKSYWTVDSKTAKTESDARIKLGSEPAELLFVNPNKKTKMGNLIGYRLIPEGVTGALLSSDDHPQIRAAFTNYNVW 580 (672)
Q Consensus 501 ~~~p~~~~~~~~~~~~~te~~a~~~~~~~~r~~~i~N~~~~n~~G~p~gY~l~p~~~~~~~~~~~s~~~~ra~fa~~~lw 580 (672)
++||++++|+++++++++|++|++++++..|.|+|+|++++|++|+|+||||+|++++.++++++|+..+||+||+|+||
T Consensus 485 ~~np~g~~~~~~~~~~~tE~~a~~~~~~~~~~~~i~N~~~~N~~G~pvgYkL~p~~~~~~l~~~~s~~~~Ra~fa~~~lw 564 (646)
T PLN02566 485 ASSPRKSYWTVVKETAKTEAEGRIRLGSEPAELLIVNPNKKTKLGNQVGYRLITGQPVTSLLSDDDYPQIRAAYTKYQVW 564 (646)
T ss_pred CCCCCcceEEEEEEEecchhhhhhccCCCCceEEEECCCCcCCCCCeeeEEEccCCCccccCCCccchhhcchhhhCcEE
Confidence 69999999999999999999999999995577999999999999999999999999999999999999999999999999
Q ss_pred EeeeCCCCCCCCCcCccCCCCCCChhhhccCCCceecCCeEEEEEeCcccCCCCCCCCccccceeeeEEEeCCCCCCCCC
Q 005872 581 VTAYNKSEKWAGGLYADQSHGDDTLAVWSNRNRSIENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGFELRPSNFFESNPV 660 (672)
Q Consensus 581 VT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~P~nFFd~nP~ 660 (672)
||||+|+|+||+|.|++|+++++||+.|+++||+|+|+|||+|||||+||+||+|||||||++++||+|||+|||++||+
T Consensus 565 VT~y~d~E~~aag~y~~qs~g~~gl~~w~~~~~~I~~~DiVlW~t~G~~HvPr~ED~PvMP~~~~gf~L~P~nFF~~NPa 644 (646)
T PLN02566 565 VTAYNKSERWAGGFYADRSRGDDGLAVWSSRNREIENKDIVLWYTVGFHHIPYQEDFPVMPTLHGGFELRPANFFESNPL 644 (646)
T ss_pred EecCCCcccCCCCcCccCCCCCCChhhhhcCCCcccCCceEEEEecccccCCChhhCCCcccccceEEEEcCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 005872 661 LK 662 (672)
Q Consensus 661 ld 662 (672)
|.
T Consensus 645 L~ 646 (646)
T PLN02566 645 LR 646 (646)
T ss_pred CC
Confidence 84
No 3
>PRK14696 tynA tyramine oxidase; Provisional
Probab=100.00 E-value=5.7e-184 Score=1556.08 Aligned_cols=627 Identities=32% Similarity=0.591 Sum_probs=575.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEccCCCHHHHHhhhhcCCCCCCCCEEEEEEEeCCeeEEEEE
Q 005872 24 SHQYHPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETTTNPPRQAFVIARIDHQTHELIV 103 (672)
Q Consensus 24 ~~~~HPldpLt~~Ei~~a~~~v~~~~~~~~~~~~~f~~I~L~eP~K~~vl~~l~~~~~~~p~R~A~vvi~~~~~~~E~vV 103 (672)
..+.|||||||++||++|++|||++.+. ..+++|.+|+|.||+|++|++||.++.+..|+|+|+|+++.+++++|++|
T Consensus 84 ~~~~HPLdpLt~~Ei~~a~~iv~~~~~~--~~~~~F~~i~L~EP~K~~v~~~~~~~~~~~~~R~A~v~~~~~~~~~e~vV 161 (721)
T PRK14696 84 EKRPHPLNALTADEIKQAVEIVKASADF--KPNTRFTEISLKEPDKEAVWAFALENKPVDQPRKADVIMLDGKHVIEAVV 161 (721)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHhcccc--CCceEEEEEEecCCCcHHHHHHHhcCCCCCCCcEEEEEEEeCCCEEEEEE
Confidence 4457999999999999999999998752 14789999999999999999999853123378999999998788999999
Q ss_pred eCCCCeEEEEEeeCCCCCCCCCHHHHHHHHHHhhcCchHHHHHHHhCC-CCcceEEccccccccCCccccCCCCceEEEE
Q 005872 104 DLSLQEIASKRIYSGYGYPMFTFEDQENADKLAFTYPPFVASIRRRGL-KLEEVVCESFSVGWYGAEEEEGKNKKRIVKV 182 (672)
Q Consensus 104 ~l~~~~v~~~~~~~~~~~p~~~~ee~~~~e~~~~~~p~~~~a~~~~g~-~~~~v~~d~~~~G~~~~~~~~~~~~~R~~~~ 182 (672)
||+.++|++++.++ ++||+++.||+.+||++|++||+|+++|++||| ++++|+||||++|||+.+++. ..++|++||
T Consensus 162 dL~~~~v~~~~~~~-~~~p~~~~~e~~~~e~~~~~dp~~~~ai~~rgl~~~~~V~~dpw~~G~~~~~~~~-~~~~Rl~~~ 239 (721)
T PRK14696 162 DLQNNKVLSWQPIK-DAHGMVLLDDFASVQNIINNSEEFAAALKKRGITDVKKVITTPLTVGYFDGKDGL-KQDARLLKV 239 (721)
T ss_pred ECCCCEEEEEEeCC-CccCCCCHHHHHHHHHHHhhCHHHHHHHHHcCCCCCCEEEEeCccccccCCcCcc-ccCceEEEE
Confidence 99999999999987 469999999999999999999999999999999 789999999999998865421 126899999
Q ss_pred EEEEecCCCCCccCCcCCcEEEEecCccEEEEEeCCceeecCCCCCCCCccccCCCCCCCCCCCceeeCCCCCeEEEece
Q 005872 183 MCYYMNGTVNLFMRPIEGISMTVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKPPFRQSLKAITVVQPDGPSFTIDGH 262 (672)
Q Consensus 183 ~~f~~~~~~n~ya~Pl~gl~~~vD~~~~kv~~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~lkp~~i~QPeG~sf~v~g~ 262 (672)
+||++.+++|+|||||+||+++||++++||++|+|++..+.|... .+|+++. +.|+++||++|+||||+||+|+|+
T Consensus 240 ~~y~~~~~~N~Ya~Pi~G~~~vvDl~~~kVi~i~d~g~~~~p~~~-~~Y~~~~---~~r~~lKPl~i~QPeG~sF~v~G~ 315 (721)
T PRK14696 240 VSYLDVGDGNYWAHPIENLVAVVDLEQKKIIKIEEGPVVPVPMTA-RPYDGRD---RVAPAVKPLQIIEPEGKNYTITGD 315 (721)
T ss_pred EEEEcCCCccccccccCceEEEEECCCCEEEEEecCCCCCCCCCC-cCCCccc---cccCCCCCceeeCCCCCCEEEcCC
Confidence 999998899999999999999999999999999998765555543 5998765 379999999999999999999999
Q ss_pred EEeeeceEEEEeeeCCCceeEEeeEEeccCCCceeEEEEeeeeeeEEeecCCCCccccccceeecCCCCCCcCccCCCCC
Q 005872 263 MIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFFDAGEYGYGLCSMTLEPL 342 (672)
Q Consensus 263 ~V~w~~W~f~~~f~~reGlvL~~v~~~D~r~~~~r~v~yrlsl~Em~VpY~dp~~~~~~k~~fD~ge~G~G~~a~~L~~G 342 (672)
+|+||||+||+|||+|||||||||+|+| .|++||||||+|||||+||||||+++|++|+|||+||||+|.+||+|++|
T Consensus 316 ~V~W~~W~f~vgf~~ReGlvL~dv~y~d--~g~~R~v~YrlSlsEm~VPYgdp~p~~~~k~~fD~GeyG~G~~an~L~lG 393 (721)
T PRK14696 316 TIHWRNWDFHLSLDSRVGPMLSTVTYND--NGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYLDSGDYGMGTLTSPIARG 393 (721)
T ss_pred eEEECCcEEEEecCCCcceEEEEEEEcC--CCcceeEEEEeeeeeEEEeCCCCCchhhhceeeeccccCCcccccccccC
Confidence 9999999999999999999999999998 57889999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEeeeEEecCCCCeeeeCceEEEEEecCCCceeeecccCCCCeeEeeeeeceEEEEEEeEeecccceEEEEEE
Q 005872 343 RDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGDIMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEF 422 (672)
Q Consensus 343 ~DCpg~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~~r~~~~LVvr~i~TVgNYdYi~~w~F 422 (672)
|||||+|+|||+++.+++|+|++++|||||||+| .|++|||++++.+ .+++|. ++||||+|+|||||||+|+|+|
T Consensus 394 cDCpg~i~Y~D~~~~~~~G~p~~~~NaICihE~D-~G~~wkHt~~~~~-~~~~r~---r~LVvr~i~TVgNYDYif~w~F 468 (721)
T PRK14696 394 KDAPSNAVLLDETIADYTGVPMEIPRAIAVFERY-AGPEYKHQEMGQP-NVSTER---RELVVRWISTVGNYDYIFDWVF 468 (721)
T ss_pred CCCCCCCEEeeeEEEcCCCCeEEecCEEEEeeec-CCCceeccccCCC-cceEee---eEEEEEEEEEecceeEEEEEEE
Confidence 9999999999999999999999999999999999 6799999999854 454444 4999999999999999999999
Q ss_pred eeCccEEEEEeEeeeeeeeeeeeccC-CC--CccccccceeccCccccccceeEEeeeecCCCCCCCceEEEEEEEeecC
Q 005872 423 KQSGSIKVTVGLTGMVQVRGTTYTHK-DH--MEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRTTRVN 499 (672)
Q Consensus 423 ~~dG~Ie~~v~aTGil~~~~~~~~~~-~~--~~~~~yGt~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~ 499 (672)
||||+||++|+|||||+|+++.+... +. .++.+|||+|+|+++|++|||+|||||||||||.+|||+++|++++|.+
T Consensus 469 ~qdGtIe~eV~aTGil~t~~i~~~~~~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIDG~~Nsv~~~d~~~~p~~ 548 (721)
T PRK14696 469 HENGTIGIDAGATGIEAVKGVKAKTMHDETAKEDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPNT 548 (721)
T ss_pred ecCceEEEEEEEEEEEEeccccccccccccccccCCCccEecCCcccccceEEEEEEEcccccCCcceEEEEeeeEccCC
Confidence 99999999999999999987543111 11 1236899999999999999999999999999999999999999998886
Q ss_pred CCCCCcceeEEEEEEeecChhhhhhhcCC-CCcEEEEecCCCCCCCCCceeEEEeeCC--cc----ccCCCCCChhhhcc
Q 005872 500 DRRSSRKSYWTVDSKTAKTESDARIKLGS-EPAELLFVNPNKKTKMGNLIGYRLIPEG--VT----GALLSSDDHPQIRA 572 (672)
Q Consensus 500 ~~~~p~~~~~~~~~~~~~te~~a~~~~~~-~~r~~~i~N~~~~n~~G~p~gY~l~p~~--~~----~~~~~~~s~~~~ra 572 (672)
++||++++|++++++++||++|++++++ +.|. |+|++++|++|+|+||||+|++ +. .+++.++|++.+||
T Consensus 549 -~~nP~g~~~~~~~t~l~tE~~a~~~~~~~~~R~--ivN~~~~N~~G~pvgYkL~p~~~~~~~~~~~~~~~p~s~~~~Ra 625 (721)
T PRK14696 549 -AGGPRTSTMQVNQYNIGNEQDAAQKFDPGTIRL--LSNPNKENRMGNPVSYQIIPYAGGTHPVAKGANFAPDEWIYHRL 625 (721)
T ss_pred -CCCccceEEEEEEEEccchhhhhhccCCccceE--EeCCCccCCCCCeeeEEEecCCCCccccccccccCCcchhhhhh
Confidence 4899999999999999999999999999 8886 9999999999999999999974 42 23688999999999
Q ss_pred ccccceEEEeeeCCCCCCCCCcCccCCCCCCChhhhccCCCceecCCeEEEEEeCcccCCCCCCCCccccceeeeEEEeC
Q 005872 573 AFTNYNVWVTAYNKSEKWAGGLYADQSHGDDTLAVWSNRNRSIENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGFELRPS 652 (672)
Q Consensus 573 ~fa~~~lwVT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~P~ 652 (672)
+||+||||||||+|+|+||+|+|++|+.+++||+.|+++||+|+|+|||+|||||+||+||+|||||||++++||+|||+
T Consensus 626 ~fa~~~lwVT~y~d~E~~aaG~y~~qs~g~~gl~~w~~~~e~i~n~DiV~W~t~G~~HvPr~ED~PvMP~~~~~f~LkP~ 705 (721)
T PRK14696 626 SFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPW 705 (721)
T ss_pred hhhhCcEEEeccCCcccCCCCCCccCCCCCCCHHHHhhCCCcccCCceEEEEecCcccCCchhhCCCccceeeeEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCC
Q 005872 653 NFFESNPVLKVKQPKE 668 (672)
Q Consensus 653 nFFd~nP~ldvp~~~~ 668 (672)
|||++||+||+|++.+
T Consensus 706 nFFd~nPaldvp~~~~ 721 (721)
T PRK14696 706 NFFDETPTLGLLKKDQ 721 (721)
T ss_pred CCCCCCcccCCCCCCC
Confidence 9999999999999854
No 4
>COG3733 TynA Cu2+-containing amine oxidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2e-180 Score=1436.80 Aligned_cols=620 Identities=32% Similarity=0.596 Sum_probs=582.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEccCCCHHHHHhhhhcCCCCCCCCEEEEEEEe--CCeeEEEEE
Q 005872 26 QYHPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETTTNPPRQAFVIARI--DHQTHELIV 103 (672)
Q Consensus 26 ~~HPldpLt~~Ei~~a~~~v~~~~~~~~~~~~~f~~I~L~eP~K~~vl~~l~~~~~~~p~R~A~vvi~~--~~~~~E~vV 103 (672)
.+|||||||++||++|++|||++...+ +.++|..|+|.||+|++|++|...+ .++.|.|+++++. +..++|++|
T Consensus 28 ~shPLdpLt~~Eik~aVEivr~e~~~~--~~~~F~~VtL~eP~K~~v~~f~~~~--~~ieR~a~~~~~~~~~~~i~EavV 103 (654)
T COG3733 28 RSHPLDPLTADEIKQAVEIVRAEADFK--KNFAFTEVTLLEPDKQEVLAFRLEN--KPIERKALAVVYELDGKGIYEAVV 103 (654)
T ss_pred cCCCCCccCHHHHHHHHHHHHhhcccC--CceeeEEEEecCCchHHHHHHHhcC--CCcchhhhhheeeccCCceEEEEE
Confidence 469999999999999999999988763 6899999999999999999998753 4689999999987 568999999
Q ss_pred eCCCCeEEEEEeeCCCCCCCCCHHHHHHHHHHhhcCchHHHHHHHhCC-CCcceEEccccccccCCccccCCCCceEEEE
Q 005872 104 DLSLQEIASKRIYSGYGYPMFTFEDQENADKLAFTYPPFVASIRRRGL-KLEEVVCESFSVGWYGAEEEEGKNKKRIVKV 182 (672)
Q Consensus 104 ~l~~~~v~~~~~~~~~~~p~~~~ee~~~~e~~~~~~p~~~~a~~~~g~-~~~~v~~d~~~~G~~~~~~~~~~~~~R~~~~ 182 (672)
+|++.+|.+|+.+++ .+|+++.|||.++|.+++++|+|+|||+|||+ ++++|+||+|++|+++.+.. .+||+++.
T Consensus 104 ~L~~nkv~~~q~i~~-a~p~i~ldef~~~e~iVr~d~~~~eA~~krGi~D~~~V~vdpwt~G~~~~~~~---~grr~~~~ 179 (654)
T COG3733 104 DLDNNKVLSWQPIKD-AHPMITLDEFASVENIVRNDPRFIEACKKRGITDMDQVIVDPWTAGYFDEEGL---KGRRRALK 179 (654)
T ss_pred EcccceeeeeEeccc-cCCceeHHHHHHHHHHHhcCHHHHHHHHhcCCchhhceEeccccccccCcccc---ccceeEEE
Confidence 999999999999985 59999999999999999999999999999999 89999999999998874333 48899999
Q ss_pred EEEEec-CCCCCccCCcCCcEEEEecCccEEEEEeCCceeecCCCCCCCCccccCCCCCCCCCCCceeeCCCCCeEEEec
Q 005872 183 MCYYMN-GTVNLFMRPIEGISMTVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKPPFRQSLKAITVVQPDGPSFTIDG 261 (672)
Q Consensus 183 ~~f~~~-~~~n~ya~Pl~gl~~~vD~~~~kv~~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~lkp~~i~QPeG~sf~v~g 261 (672)
++|+|. .++|+|+|||+||+++||++++||++|+|++++|+|+. ..+|..+.++ ..+.++||++|.||||+||+|+|
T Consensus 180 ~m~yr~~e~~N~y~hPi~gl~aiVDl~~~kVv~idd~~vvPlp~~-~~ny~~e~i~-~~~~~~KpiqI~QPeg~sf~i~G 257 (654)
T COG3733 180 VMWYRDVEDDNYYAHPIEGLVAIVDLEKKKVVRIDDHPVVPLPMK-RANYGRERIG-KALGPVKPIQIIQPEGKSFTITG 257 (654)
T ss_pred EEEEEecCCCCcccccccceeeEEEcccCeEEEecCCCccccccc-ccCcCHHHhh-hhcCCCCCceeecCCCceEEEec
Confidence 999994 89999999999999999999999999999999999984 4588766654 33555999999999999999999
Q ss_pred eEEeeeceEEEEeeeCCCceeEEeeEEeccCCCceeEEEEeeeeeeEEeecCCCCccccccceeecCCCCCCcCccCCCC
Q 005872 262 HMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFFDAGEYGYGLCSMTLEP 341 (672)
Q Consensus 262 ~~V~w~~W~f~~~f~~reGlvL~~v~~~D~r~~~~r~v~yrlsl~Em~VpY~dp~~~~~~k~~fD~ge~G~G~~a~~L~~ 341 (672)
++|+||+|+||+|||+||||||+||+|.| +|..|+|+||+||+||+||||||+++|++|++||+||||+|.++++|.+
T Consensus 258 ~~i~W~~w~frig~n~ReGlvl~dVsY~D--~g~~Rpv~YraSl~eMvVPYGdPd~~h~~K~~fD~GeYglG~l~~plal 335 (654)
T COG3733 258 DEISWQNWRFRIGMNPREGLVLSDVSYND--NGNKRPVLYRASLVEMVVPYGDPDPGHYFKNAFDSGEYGLGTLTSPLAL 335 (654)
T ss_pred CEEEEeeeeEEEeccccCCeEEEEEEEcC--CCccceEEEEeeecceeeecCCCCcchhhhhcccccccCccccccchhh
Confidence 99999999999999999999999999999 7788999999999999999999999999999999999999999999999
Q ss_pred CCCCCC-CcEEeeeEEecCCCCeeeeCceEEEEEecCCCceeeecccCCCCeeEeeeeeceEEEEEEeEeecccceEEEE
Q 005872 342 LRDCPP-NAVFMDAYFSKQDGMPRKIPKAFCIFERYAGDIMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDW 420 (672)
Q Consensus 342 G~DCpg-~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~~r~~~~LVvr~i~TVgNYdYi~~w 420 (672)
| ||.| +|+|||+++++.+|+|+++||||||||+| .|+||||+|+|++..+++|.| .||||+|+|||||||+|+|
T Consensus 336 G-dc~g~~i~~lDa~~a~~tG~p~~i~~AIcIhEed-~GvlwKH~d~rs~~~~trr~r---~LVVs~i~Tv~NYdYg~~W 410 (654)
T COG3733 336 G-DCAGSNIVLLDATFANYTGEPMTIPNAICIHEED-AGVLWKHQDFRSPNVETRRAR---GLVVSWIATVANYDYGFYW 410 (654)
T ss_pred c-ccccceeEEEeeeeeccCCceEEecceeEEEecc-ccceeeehhhcCCccceeecc---ceEEEEEEeecccceeEEE
Confidence 9 9999 89999999999999999999999999999 899999999999988877776 8999999999999999999
Q ss_pred EEeeCccEEEEEeEeeeeeeeeeeeccCCCCcc-ccccceeccCccccccceeEEeeeecCCCCCCCceEEEEEEEeecC
Q 005872 421 EFKQSGSIKVTVGLTGMVQVRGTTYTHKDHMEE-DVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRTTRVN 499 (672)
Q Consensus 421 ~F~~dG~Ie~~v~aTGil~~~~~~~~~~~~~~~-~~yGt~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~ 499 (672)
+|||||+||++++||||++++++. +++. ..|||+|.|++.|++||||||+||||||||.+|||+++|++..|.+
T Consensus 411 ifhqDGtIe~e~klTGIin~~a~~-----e~~p~~~yGt~v~~~v~g~~HQH~Fn~RLdm~VDG~~Nsv~e~nv~~~P~~ 485 (654)
T COG3733 411 IFHQDGTIEFEAKLTGIINTKAIA-----EGQPDPTYGTLVDPNVVGHTHQHFFNARLDMDVDGERNSVVEMNVVGAPIT 485 (654)
T ss_pred EEEcCceEEEeecceeEEEeehhc-----CCCCCCCccceeccccccccceeEEEeeecccccCcccceEEEEcccCCCC
Confidence 999999999999999999997542 2222 3499999999999999999999999999999999999998776663
Q ss_pred CCCCCcceeEEEEEEeecChhhhhhhcCC-CCcEEEEecCCCCCCCCCceeEEEeeCCccccCCCCCChhhhccccccce
Q 005872 500 DRRSSRKSYWTVDSKTAKTESDARIKLGS-EPAELLFVNPNKKTKMGNLIGYRLIPEGVTGALLSSDDHPQIRAAFTNYN 578 (672)
Q Consensus 500 ~~~~p~~~~~~~~~~~~~te~~a~~~~~~-~~r~~~i~N~~~~n~~G~p~gY~l~p~~~~~~~~~~~s~~~~ra~fa~~~ 578 (672)
..||+||+|+++++++++|++|.+++|+ +.|+|+|+|++|+|.+|+|+||||+|+.+..+++.++|...+|++||+||
T Consensus 486 -~~np~gNaf~~e~t~l~~e~dA~r~~d~~T~R~W~I~NpnkkN~~G~PvaYkLi~~~~~~~~~~~gs~v~~R~~Fa~~h 564 (654)
T COG3733 486 -KGNPYGNAFQVEETVLKNEKDACRDADPKTSRYWKIANPNKKNYLGNPVAYKLIPGHNPTPPVAEGSQVRHRAGFATKH 564 (654)
T ss_pred -CCCCccceEEEecccCccHHHHHhhcCCcccceEEecCcccccccCCCceeEEecCCCCCCcCCCCcchhhhhhhccce
Confidence 4899999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeCCCCCCCCCcCccCCCCCCChhhhccCCCceecCCeEEEEEeCcccCCCCCCCCccccceeeeEEEeCCCCCCC
Q 005872 579 VWVTAYNKSEKWAGGLYADQSHGDDTLAVWSNRNRSIENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGFELRPSNFFESN 658 (672)
Q Consensus 579 lwVT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~P~nFFd~n 658 (672)
||||+|++.|+||+|+|+||+.+++||+.|+++||||+|||||+|||||+||+||+|||||||+++.||+|+|+|||++|
T Consensus 565 lwVT~y~p~ErYp~GdYpnq~~~~~GLp~yi~~d~sl~neDlVvW~T~GitHv~rpED~PvMP~e~~gf~L~P~gFFd~n 644 (654)
T COG3733 565 LWVTPYHPGERYPAGDYPNQSAGGKGLPEYIKDDRSLDNEDLVVWHTFGITHVPRPEDWPVMPVEWAGFLLKPRGFFDRN 644 (654)
T ss_pred EEEeccCcccccCCCCCCCCCCCCCChhhhhhccccccCcceEEEEecCceeccCcccCCccccchhceEeccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q 005872 659 PVLKVKQPKE 668 (672)
Q Consensus 659 P~ldvp~~~~ 668 (672)
|+|++|.+.+
T Consensus 645 Pai~lp~~~n 654 (654)
T COG3733 645 PAIDLPRKDN 654 (654)
T ss_pred cccCCCccCC
Confidence 9999998753
No 5
>KOG1186 consensus Copper amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-159 Score=1313.58 Aligned_cols=631 Identities=54% Similarity=0.929 Sum_probs=581.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEccCCCHHHHHhhhhcCCCCCCCCEEEEEEEeCCeeEEEEE
Q 005872 24 SHQYHPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETTTNPPRQAFVIARIDHQTHELIV 103 (672)
Q Consensus 24 ~~~~HPldpLt~~Ei~~a~~~v~~~~~~~~~~~~~f~~I~L~eP~K~~vl~~l~~~~~~~p~R~A~vvi~~~~~~~E~vV 103 (672)
..+.|||||||+.||..++.||+....+.+.....|..|.|.||+|+-+|.|+.++++++|+|+|++|.+.+++++|++|
T Consensus 24 ~~p~hPlDPLte~EL~kvr~iL~~~d~~s~~~~~~~~av~l~eP~K~~vlsw~~gP~~~pPpRRA~vVaR~gg~t~e~~v 103 (670)
T KOG1186|consen 24 ERPSHPLDPLTELELPKVAAILAHLDPGSPHPAFEAVAVVLFEPQKQPVLSWLSGPLPHPPPRRALVVERHGGPTPEARV 103 (670)
T ss_pred CCCCCCcCccchhhhhHHHHHHhhcccCCCCCceEEEEEEecCCCcCccceeccCCCCCCCcceeEEEeecCCCceEEEE
Confidence 45679999999999999999999987654456778999999999999999999854345789999999899999999999
Q ss_pred eCCCCeEEEEEee-CCCCCCCCCHHHHHHHHHHhhcCchHHHHHHHhCCCCcceEEccccccccCCccccCCCCceEEEE
Q 005872 104 DLSLQEIASKRIY-SGYGYPMFTFEDQENADKLAFTYPPFVASIRRRGLKLEEVVCESFSVGWYGAEEEEGKNKKRIVKV 182 (672)
Q Consensus 104 ~l~~~~v~~~~~~-~~~~~p~~~~ee~~~~e~~~~~~p~~~~a~~~~g~~~~~v~~d~~~~G~~~~~~~~~~~~~R~~~~ 182 (672)
+|+.+++++.+.+ .+.+.|+++.+|+.+..+++++.+.|..++.++|+.++.|.|.+|..|||+..... -+|+++.
T Consensus 104 dlst~evvs~~~~~~~~g~P~lT~~e~~~~s~~~l~~~~f~~si~~rG~~~s~vic~~~t~Gwyge~~~g---~~Rlik~ 180 (670)
T KOG1186|consen 104 DLSTAEVVSIKHHLVGNGYPILTADELFNTSGRVLAFKPFCPRGLRRGDRMSWVVCYPNTSGWYGEHPVG---LERLIKH 180 (670)
T ss_pred ecchheeeecccccccCccccccHHHHHhhhcCCccccccchhhhccCCcceeEEEecceeeecccCCcc---hhhhhhh
Confidence 9999999997766 67789999999999999999999999999999999999999999999999854321 4799999
Q ss_pred EEEEecCCCCCccCCcCCcEEEEecCccEEEEEeCCceeecCCCCCCCCccccCCCCCCCCCCCceeeCCCCCeEEEece
Q 005872 183 MCYYMNGTVNLFMRPIEGISMTVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKPPFRQSLKAITVVQPDGPSFTIDGH 262 (672)
Q Consensus 183 ~~f~~~~~~n~ya~Pl~gl~~~vD~~~~kv~~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~lkp~~i~QPeG~sf~v~g~ 262 (672)
.||++.+..|+|.+|++|++++||+++|||+++.|+..+|+|+..+++|+.+... .-+|++..+||||||+|+|+
T Consensus 181 ~~f~~~~~~n~y~rpieg~yi~vdld~~kVi~~~d~~~iP~P~~~Gt~~Rs~~~p-----~~~pLq~isPeGP~FrVeG~ 255 (670)
T KOG1186|consen 181 MAFYRAGWVNQQVRPIEGFYIIVDLDEMKVIAGRDRVRVPLPKAKGTELRSSVLP-----GFKPLQPISPEGPGFRVEGH 255 (670)
T ss_pred cccccCCCeeEEEeecCceEEeeccccceEEEEecccccccCCCCCCccccccCC-----CCccccccCCCCCceEEEEE
Confidence 9999988999999999999999999999999999999899999888888644321 33447777799999999999
Q ss_pred EEeeeceEEEEeeeCCCceeEEeeEEeccCCCceeEEEEeeeeeeEEeecCCCCccccccceeecCCCCCCcCccCCCCC
Q 005872 263 MIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFFDAGEYGYGLCSMTLEPL 342 (672)
Q Consensus 263 ~V~w~~W~f~~~f~~reGlvL~~v~~~D~r~~~~r~v~yrlsl~Em~VpY~dp~~~~~~k~~fD~ge~G~G~~a~~L~~G 342 (672)
.|+|++|+|++||+.|+||||++|+|.|.+ .-|||+||+|+|||+||||||+++|++|+|||+||||+|..|++|++|
T Consensus 256 ~V~w~nW~Fh~~~~~r~Gl~is~v~~~d~~--~~r~v~Y~~s~~E~~vpYgdp~~~~~~~~y~D~Ge~G~G~~a~~L~~g 333 (670)
T KOG1186|consen 256 LVRWANWEFHIGFDVRAGLVISDASFFDED--VYRRVLYKGSLSEMFVPYGDPSPDWYFKTYLDCGEFGLGQYAVSLAPG 333 (670)
T ss_pred EEEeeccEEEEccCCccceEEEEEEEcCCC--ceeeEEEEeeeeeeEEecCCCCchhheeeeecccccCCCccccccccC
Confidence 999999999999999999999999999944 589999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEeeeEEecCCCCeeeeCceEEEEEecCCCceeeecccCCCCeeEeeeeeceEEEEEEeEeecccceEEEEEE
Q 005872 343 RDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGDIMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEF 422 (672)
Q Consensus 343 ~DCpg~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~~r~~~~LVvr~i~TVgNYdYi~~w~F 422 (672)
||||++|+|||++++..+|+|.+++||+||||+++|.|||||+++...+..++++|++++||||+++|||||||||||+|
T Consensus 334 ~DCp~~a~y~D~~f~~~~g~p~~~~n~~CifE~~~G~~l~rH~~~~~~~~~~~~~~~~~~LVvr~~~tv~NYdYi~d~~F 413 (670)
T KOG1186|consen 334 TDCPGNATYMDGHFAGQDGTPEKIPNAMCIFEKYAGDILWRHTEAEIPGLHITEVRPDVSLVVRMVTTVGNYDYIVDYEF 413 (670)
T ss_pred CCCCCcceEEEEEEecCCCCcEEecCcEEEEEccCCCceeeccccccCCCcccccccccEEEEEEeeeecccceEEEEEE
Confidence 99999999999999999999999999999999998889999999776665778999999999999999999999999999
Q ss_pred eeCccEEEEEeEeeeeeeeeeeeccCCCCccccccceeccCccccccceeEEeeeecCCCCCCCceEEEEEEEeecCCC-
Q 005872 423 KQSGSIKVTVGLTGMVQVRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRTTRVNDR- 501 (672)
Q Consensus 423 ~~dG~Ie~~v~aTGil~~~~~~~~~~~~~~~~~yGt~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~~~- 501 (672)
|+||.||++|+|||||+++++.|... ...|||+|+++++|++|||+|+|||||||||++|++...+.+..+...+
T Consensus 414 ~~~G~ie~~v~lTG~l~~~~~~~~~~----~~~~Gt~v~~~~ig~~H~H~~~~rldldvdG~~n~~~v~~~~~~~~~~~~ 489 (670)
T KOG1186|consen 414 KPSGVIEAGVGLTGVLEVKPVEYGET----SDIYGTIVAENTIGVNHDHFVTFRLDLDVDGTKNNSFVRDELVTPRTPPS 489 (670)
T ss_pred ecCCeEEEEEeeEEEEEeeccccccc----cccccceecccccccccceEEEEEEcccccCCccceeeeeeEeecccCCC
Confidence 99999999999999999988765322 3689999999999999999999999999999965444445555555555
Q ss_pred CCCcceeEEEEEEeecChhhhhhhcCC-CCcEEEEecCCCCCCCCCceeEEEeeCCccccCCCCCChhhhccccccceEE
Q 005872 502 RSSRKSYWTVDSKTAKTESDARIKLGS-EPAELLFVNPNKKTKMGNLIGYRLIPEGVTGALLSSDDHPQIRAAFTNYNVW 580 (672)
Q Consensus 502 ~~p~~~~~~~~~~~~~te~~a~~~~~~-~~r~~~i~N~~~~n~~G~p~gY~l~p~~~~~~~~~~~s~~~~ra~fa~~~lw 580 (672)
.++++++|++++++++||++|+.+++. +++.|.|+|++++|++|+|+||||+|++++.+++++++.+++||+|++|+||
T Consensus 490 ~~~~~~~~~~~~~~~kte~~~~~~~~~~~~~~~~~~n~n~~~~~G~~~gYrl~~~s~a~~ll~~~~~~~~r~af~~y~l~ 569 (670)
T KOG1186|consen 490 VTPRKSYWTTKRKTAKTEAEARAKLNGLKAEELLVVNPNKKTKHGNPVGYRLVPGSTAGPLLPQDDYPQIRAAFTNYNLW 569 (670)
T ss_pred CCcccchhhhhhhhhhhHHHHhhhhccCCCceEEEECCCCccccCCccceEEeeCCcccccCCCCchHHhhhhhhcceeE
Confidence 467899999999999999999999988 9999999999999999999999999999999999999999999999999999
Q ss_pred EeeeCCCCCCCCCcCccCCCCCCChhhhccCCCceecCCeEEEEEeCcccCCCCCCCCccccceeeeEEEeCCCCCCCCC
Q 005872 581 VTAYNKSEKWAGGLYADQSHGDDTLAVWSNRNRSIENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGFELRPSNFFESNPV 660 (672)
Q Consensus 581 VT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~P~nFFd~nP~ 660 (672)
||+|+++|.||+|.|.+|+.++++|+.|.+.|++|+|+|||+|||+||||||++||||+|||...||.|||+|||++||+
T Consensus 570 VT~y~~~E~~~~g~y~~~~~~~~tl~~w~~~nr~ien~DiV~W~t~Gf~HiP~~ED~P~mpt~~~gF~LrP~NFF~~nP~ 649 (670)
T KOG1186|consen 570 VTPYNESEVWASGLYADQSQGDDTLAVWSQRNRSIENKDIVMWYTVGFHHVPCQEDFPTMPTLGGGFELRPTNFFERNPS 649 (670)
T ss_pred EeccCccccCcccccccCCCCCCcceehhhcccccccCceEEEEEcceeecCchhcCCCCcccCCceeeccccccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 005872 661 LKVKQPKE 668 (672)
Q Consensus 661 ldvp~~~~ 668 (672)
|++||++.
T Consensus 650 l~~~p~~~ 657 (670)
T KOG1186|consen 650 LKSPPSKY 657 (670)
T ss_pred ccCCCcce
Confidence 99999864
No 6
>PF01179 Cu_amine_oxid: Copper amine oxidase, enzyme domain; InterPro: IPR015798 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents the C-terminal catalytic domain of copper amine oxidases, and has a super-sandwich fold consisting of 18 beta-strands in 2 sheets []. A domain with a similar structural fold can be found as the third domain in lysyl oxidase PplO [].; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1US1_A 2C11_B 3ALA_E 2Y73_B 2C10_B 1PU4_B 2Y74_B 1W2Z_D 1KSI_B 1RKY_A ....
Probab=100.00 E-value=6.2e-141 Score=1152.16 Aligned_cols=410 Identities=40% Similarity=0.714 Sum_probs=366.1
Q ss_pred CceeeCCCCCeEEEeceEEeeeceEEEEeeeCCCceeEEeeEEeccCCCceeEEEEeeeeeeEEeecCCCCcccccccee
Q 005872 246 AITVVQPDGPSFTIDGHMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFF 325 (672)
Q Consensus 246 p~~i~QPeG~sf~v~g~~V~w~~W~f~~~f~~reGlvL~~v~~~D~r~~~~r~v~yrlsl~Em~VpY~dp~~~~~~k~~f 325 (672)
||+|+||||+||+|+|++|+||+|+||++|++|||||||||+|.| ++++|+||+|||||+|||+||+++|++|+||
T Consensus 1 Pl~i~qP~G~sf~v~g~~v~w~~W~f~~~~~~r~Gl~l~dV~y~~----~~~~I~yr~sl~Em~vpY~d~~~~~~~~~~~ 76 (413)
T PF01179_consen 1 PLHIVQPEGPSFTVDGNYVEWQGWSFRVGFNPREGLVLHDVRYKG----ERRPILYRLSLQEMVVPYGDPDPPHHRKNAF 76 (413)
T ss_dssp -EEEE-TTS-SEEEETTEEEETTEEEEEEEETTTEEEEEEEEETT----EEEEEEEEEEEEEEEEEEE-SSTTHHH-EEE
T ss_pred CcceeCCCCCCEEEeCCEEEeCCcEEEEECCCCccceEEEEEEeC----CCccEEEEEeeeeeeeecCCCCchhhccccc
Confidence 899999999999999999999999999999999999999999966 2236999999999999999999999999999
Q ss_pred ecCCCCCCcCccCCCCCCCCCCCcEEeeeEEecCCCCeeeeCceEEEEEecCCCceeeecccCCCCeeEeeeeeceEEEE
Q 005872 326 DAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGDIMWRHTEATIPGKTVREVRQDVSLVV 405 (672)
Q Consensus 326 D~ge~G~G~~a~~L~~G~DCpg~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~~r~~~~LVv 405 (672)
|+||||||.++++|++|||||++|+|||+++.+++|+|++++|||||||+| .||||||++++.+..+++ ++++|||
T Consensus 77 D~geyG~G~~~~~L~~G~DCpg~~~yld~~~~~~~g~p~~~~naiCi~E~d-~G~l~kH~~~~~~~~~~~---r~~~LVv 152 (413)
T PF01179_consen 77 DSGEYGLGSMANSLVLGCDCPGTITYLDAVLADDSGEPVTIPNAICIFEED-AGPLWKHTDYRTGRFEVR---RSRRLVV 152 (413)
T ss_dssp HHHHTTTTTTBE-STTTTSS-TTSEEEEEEEEETTSSEEEEEEEEEEEEEE-EEEEEEEEETTSSEEEEE---EEEEEEE
T ss_pred cccccccCccccccccCCCCCceeEEcceEEECCCCCceeccceEEEEEec-CCchhhccccccccccee---eccEEEE
Confidence 999999999999999999999999999999999999999999999999999 559999999998665544 4559999
Q ss_pred EEeEeecccceEEEEEEeeCccEEEEEeEeeeeeeeeeeeccCCCCccccccceeccCccccccceeEEeeeecCCCCCC
Q 005872 406 RTVSTFGNYDYVNDWEFKQSGSIKVTVGLTGMVQVRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDA 485 (672)
Q Consensus 406 r~i~TVgNYdYi~~w~F~~dG~Ie~~v~aTGil~~~~~~~~~~~~~~~~~yGt~V~~~~~a~~HqH~f~~RlD~dIdG~~ 485 (672)
|+|+|||||||||+|+|||||+||++|+|||||+++.. . ..+..+||++|+++++|++|||+|+|||||||||++
T Consensus 153 r~i~TV~NYDYi~~~~F~~dG~Ie~~v~aTGil~~~~~--~---~~~~~~yG~~V~~~~~a~~HqH~f~~RlD~dIdG~~ 227 (413)
T PF01179_consen 153 RTISTVGNYDYIFDWIFYQDGSIEVEVRATGILSTSPY--A---PGEQSPYGTRVAPGVMAPNHQHFFNFRLDFDIDGTN 227 (413)
T ss_dssp EEEEEETTEEEEEEEEEETTS-EEEEEEEEE---EEET--T---TTCGGGSEEEEETTEEEEEEEEEEEEEEEE-TTSSE
T ss_pred EEEEeccccceEEEEEEecCceEEEEEEeeeEEEEEec--C---CCCccCCcceEcCCccccceeEEEEEEEccccCCCC
Confidence 99999999999999999999999999999999998653 1 222478999999999999999999999999999999
Q ss_pred CceEEEEEEEeec--CCCCCCcceeEEEEEEeecChhhhhhhcCC-CCcEEEEecCCCCCCCCCceeEEEeeCCccccCC
Q 005872 486 NSFVRSKLRTTRV--NDRRSSRKSYWTVDSKTAKTESDARIKLGS-EPAELLFVNPNKKTKMGNLIGYRLIPEGVTGALL 562 (672)
Q Consensus 486 Nsv~~~d~~~~~~--~~~~~p~~~~~~~~~~~~~te~~a~~~~~~-~~r~~~i~N~~~~n~~G~p~gY~l~p~~~~~~~~ 562 (672)
|||+++|+++++. +...||++++|+++++++++|++|++++++ ++|+|+|+|++++|++|+|+||||+|++++++++
T Consensus 228 Nsv~~~d~~~~~~~~~~~~np~~~~~~~~~t~~~tE~~a~~~~~~~~~r~w~vvN~~~~N~~G~p~gY~l~~~~~~~~l~ 307 (413)
T PF01179_consen 228 NSVVEVDIVPEPVTTPWSPNPYGNAFKTERTVLETEAEAARDFDPSTPRYWKVVNPNKKNPWGHPVGYRLQPGSSAHLLA 307 (413)
T ss_dssp EEEEEEEEEEEEEEETTSTTSEEEEEEEEEEEE-BGGGGEBETTCGGTEEEEEEEEEEEETTSSEEEEEEEEECBSS-SS
T ss_pred CeEEEEEeEEcccccCCCCCCccceeEEEEEeeCChhHhhhccCCCCccEEEEEcCCccccccCCceEEEecCCcccccC
Confidence 9999999999987 334789999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCChhhhccccccceEEEeeeCCCCCCCCCcCccCCCCCCChhhhccCCCceecCCeEEEEEeCcccCCCCCCCCcccc
Q 005872 563 SSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDDTLAVWSNRNRSIENKDIVLWYTLGFHHVPYQEDFPVMPT 642 (672)
Q Consensus 563 ~~~s~~~~ra~fa~~~lwVT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~ 642 (672)
+++|...+||+||+|+||||||+|+|+||+|+|++|++++++|+.|+++||+|+|||||+|+|+|+||+||+|||||||+
T Consensus 308 ~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~HvPr~ED~Pvmp~ 387 (413)
T PF01179_consen 308 PPDSWVARRASFARHHLWVTKYKDSERYASGEYNNQSPGDVGLPDWIADNESIENEDIVVWVTFGFHHVPRPEDWPVMPV 387 (413)
T ss_dssp STTSCHHHHTGGGGSSEEEEE--TTGS-ST-TTTTT-SSSSSHHHHHTTSSB-SSEEEEEEEEEEEEE---GGGSSSEEE
T ss_pred CCcchhhhccccccCceEEeecCCCccCCCCCCccCCCCCCCHHHHhccCCcccCCCeEEEEeccccccCCcccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeEEEeCCCCCCCCCCCCCCCCC
Q 005872 643 LNGGFELRPSNFFESNPVLKVKQPKE 668 (672)
Q Consensus 643 ~~~~f~L~P~nFFd~nP~ldvp~~~~ 668 (672)
+++||+|||+|||++||+||+|++.|
T Consensus 388 ~~~gf~L~P~nFF~~nPald~p~~~~ 413 (413)
T PF01179_consen 388 EWLGFMLKPFNFFDRNPALDVPPSVQ 413 (413)
T ss_dssp EEEEEEEEEESSSSSSTTTTCTTC--
T ss_pred cEEEEEEEcCCCCCCCccccCCCCCC
Confidence 99999999999999999999999876
No 7
>PF02728 Cu_amine_oxidN3: Copper amine oxidase, N3 domain; InterPro: IPR015802 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N3) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1TU5_A 2PNC_B 3MPH_B 3HII_B 3HI7_A 3K5T_A 3HIG_A 1SPU_A 2WGQ_A 2WO0_A ....
Probab=99.87 E-value=4.3e-22 Score=178.90 Aligned_cols=99 Identities=35% Similarity=0.721 Sum_probs=82.9
Q ss_pred CCCCHHHHHHHHHHhhcCchHHHHHHHhCC-CCcceEEccccccccCCccccCCCCceEEEEEEEEecCCCCCccCCcCC
Q 005872 122 PMFTFEDQENADKLAFTYPPFVASIRRRGL-KLEEVVCESFSVGWYGAEEEEGKNKKRIVKVMCYYMNGTVNLFMRPIEG 200 (672)
Q Consensus 122 p~~~~ee~~~~e~~~~~~p~~~~a~~~~g~-~~~~v~~d~~~~G~~~~~~~~~~~~~R~~~~~~f~~~~~~n~ya~Pl~g 200 (672)
|+++.+|+.+++++++++|+|+++|+++|+ +++.|.|++|++||++..+ + ++|++|++||+|...+|+|||||+|
T Consensus 1 ppi~~~E~~~~~~~~~~~p~~~~al~~rgi~d~~~v~~~pw~~g~~g~~~-~---g~Rl~~~~~~~r~~~~n~YahPi~g 76 (101)
T PF02728_consen 1 PPITLEEFAEAEEIVKADPEFQAALKKRGITDMDEVCCDPWSYGPFGEES-E---GRRLTWVLCFMRDSGNNFYAHPIEG 76 (101)
T ss_dssp S---HHHHHHHHHHHHTGHHHHHHHHHTTCSCGGGEEEEEEE-SSSSSST-T---TS-EEEEEEEE-SSTS-GGGSEEEC
T ss_pred CCcCHHHHHHHHHHHHHCHHHHHHHHHhCCCCcCeEEEeeecccCCCCCC-C---CceEEEEEEEEEcCCCcccccccCc
Confidence 689999999999999999999999999999 6899999999999888544 3 7899999999997555999999999
Q ss_pred cEEEEecCccEEEEEeCCc-eeecC
Q 005872 201 ISMTVDLDEMKIIGFQDRV-TVPVP 224 (672)
Q Consensus 201 l~~~vD~~~~kv~~i~d~~-~~~~p 224 (672)
|+++||++++||++|++++ .+|.|
T Consensus 77 l~~~vD~~~~~vi~i~d~~v~~p~p 101 (101)
T PF02728_consen 77 LEPLVDLDSMEVIRIEDRGVFYPGP 101 (101)
T ss_dssp EEEEEETTTTEEEEEEEEEEEETT-
T ss_pred eEEEEECCCCEEEEEEeCCceeeCC
Confidence 9999999999999999988 46654
No 8
>PF02727 Cu_amine_oxidN2: Copper amine oxidase, N2 domain; InterPro: IPR015800 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N2) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1W2Z_A 1KSI_B 1US1_A 2C11_B 3ALA_E 2Y73_B 2C10_B 1PU4_B 2Y74_B 3SX1_A ....
Probab=99.77 E-value=1.6e-19 Score=157.78 Aligned_cols=85 Identities=33% Similarity=0.494 Sum_probs=71.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEccCCCHHHHHhhhhcCCCCCCCCEEEEEEEeCCeeEEEEEeCCC
Q 005872 28 HPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETTTNPPRQAFVIARIDHQTHELIVDLSL 107 (672)
Q Consensus 28 HPldpLt~~Ei~~a~~~v~~~~~~~~~~~~~f~~I~L~eP~K~~vl~~l~~~~~~~p~R~A~vvi~~~~~~~E~vV~l~~ 107 (672)
|||||||++||++|+++|+++... ...+++|.+|+|.||+|++||+| +.+ ++.|+|+|+|+++++++.+|++|+|+.
T Consensus 1 HPLdpLt~~Ei~~a~~il~~~~~~-~~~~~~F~~I~L~EP~K~~vl~~-~~~-~~~p~R~A~vv~~~~~~~~e~vVdl~~ 77 (86)
T PF02727_consen 1 HPLDPLTAEEIQAAAAILRDAHPL-AGEKNRFRSIELQEPPKAEVLAF-ERG-GPPPPRRARVVVYDGGQSYEAVVDLTS 77 (86)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHTGT-TTTSEEEEEEEEE---HHHHHHH-HCC-TTTS-EEEEEEEEETSSSSEEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHhcccc-CCCCeEEEEEEeCCCCHHHHhcc-ccC-CcCCCeEEEEEEEECCeeeeEEEECcC
Confidence 999999999999999999998832 12578999999999999999999 544 345899999999998877999999999
Q ss_pred CeEEEEEe
Q 005872 108 QEIASKRI 115 (672)
Q Consensus 108 ~~v~~~~~ 115 (672)
++|++|+.
T Consensus 78 ~~V~~~~~ 85 (86)
T PF02727_consen 78 GKVVSWKE 85 (86)
T ss_dssp EECSCEEE
T ss_pred CccccCcc
Confidence 99998875
No 9
>PF09248 DUF1965: Domain of unknown function (DUF1965); InterPro: IPR015328 Members of this family of fungal domains adopt a structure that consists of an alpha/beta motif. Their exact function has not, as yet, been determined []. ; PDB: 1N9E_A 1RKY_A 1W7C_A 3PGB_A.
Probab=61.34 E-value=6.2 Score=34.00 Aligned_cols=29 Identities=17% Similarity=0.421 Sum_probs=21.3
Q ss_pred CCCccCCcCCcEEEEec-----CccEEEEEeCCce
Q 005872 191 VNLFMRPIEGISMTVDL-----DEMKIIGFQDRVT 220 (672)
Q Consensus 191 ~n~ya~Pl~gl~~~vD~-----~~~kv~~i~d~~~ 220 (672)
|..+.+|| ||++.+|+ ++|||++|.+++.
T Consensus 2 d~~tllPl-gl~~~~DiTGrDpS~Wkv~gw~Yn~~ 35 (74)
T PF09248_consen 2 DSETLLPL-GLYFKIDITGRDPSKWKVLGWVYNGQ 35 (74)
T ss_dssp S-GGG-EE-EEEEEEE--SS-GGG-EEEEEEETTE
T ss_pred Cccceece-eeEEEEEeccCChHHcEEEEEEECCE
Confidence 34688999 89999999 6899999997765
No 10
>PF04270 Strep_his_triad: Streptococcal histidine triad protein ; InterPro: IPR006270 This entry represents a repeated sequence region that includes a His-X-X-His-X-His (histidine triad) motif, which is found in family of Streptococcal proteins. Members of the family are suggested to cleave human complement component 3, and family member PhpA has been shown in vaccine studies to be a protective antigen in mice []. ; PDB: 2CS7_C.
Probab=31.69 E-value=26 Score=28.38 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=15.7
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q 005872 29 PLDSLTPSEFSQIRSIVTK 47 (672)
Q Consensus 29 PldpLt~~Ei~~a~~~v~~ 47 (672)
|...||+.|+++|.+.+.+
T Consensus 34 ~k~dLs~~E~~aA~~~~~~ 52 (53)
T PF04270_consen 34 PKSDLSASELKAAQAYLAG 52 (53)
T ss_dssp EGGGS-HHHHHHHHHHHH-
T ss_pred chhhCCHHHHHHHHHHHhc
Confidence 7889999999999999875
No 11
>PF02728 Cu_amine_oxidN3: Copper amine oxidase, N3 domain; InterPro: IPR015802 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N3) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1TU5_A 2PNC_B 3MPH_B 3HII_B 3HI7_A 3K5T_A 3HIG_A 1SPU_A 2WGQ_A 2WO0_A ....
Probab=30.08 E-value=13 Score=33.42 Aligned_cols=80 Identities=19% Similarity=0.218 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEccCCCHHHHHhhhhcC-CCC-CCCCEEEEEEEe--CC---e----e-E
Q 005872 32 SLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNE-TTT-NPPRQAFVIARI--DH---Q----T-H 99 (672)
Q Consensus 32 pLt~~Ei~~a~~~v~~~~~~~~~~~~~f~~I~L~eP~K~~vl~~l~~~-~~~-~p~R~A~vvi~~--~~---~----~-~ 99 (672)
|+|.+|+.++.+++++..... ..+ ....|..+.+-.+..|--+. +.. .-.|.+.+.+|. ++ . - .
T Consensus 2 pi~~~E~~~~~~~~~~~p~~~--~al--~~rgi~d~~~v~~~pw~~g~~g~~~~g~Rl~~~~~~~r~~~~n~YahPi~gl 77 (101)
T PF02728_consen 2 PITLEEFAEAEEIVKADPEFQ--AAL--KKRGITDMDEVCCDPWSYGPFGEESEGRRLTWVLCFMRDSGNNFYAHPIEGL 77 (101)
T ss_dssp ---HHHHHHHHHHHHTGHHHH--HHH--HHTTCSCGGGEEEEEEE-SSSSSSTTTS-EEEEEEEE-SSTS-GGGSEEECE
T ss_pred CcCHHHHHHHHHHHHHCHHHH--HHH--HHhCCCCcCeEEEeeecccCCCCCCCCceEEEEEEEEEcCCCcccccccCce
Confidence 689999999999998653110 000 00012222222233332221 111 245888888775 22 1 1 4
Q ss_pred EEEEeCCCCeEEEEEe
Q 005872 100 ELIVDLSLQEIASKRI 115 (672)
Q Consensus 100 E~vV~l~~~~v~~~~~ 115 (672)
+++||+.+.+++++..
T Consensus 78 ~~~vD~~~~~vi~i~d 93 (101)
T PF02728_consen 78 EPLVDLDSMEVIRIED 93 (101)
T ss_dssp EEEEETTTTEEEEEEE
T ss_pred EEEEECCCCEEEEEEe
Confidence 7899999999988653
Done!