Query 005872
Match_columns 672
No_of_seqs 161 out of 716
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 09:45:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005872.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005872hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ksi_A Copper amine oxidase; P 100.0 3E-187 9E-192 1581.0 71.7 638 27-671 2-639 (642)
2 3sxx_A Peroxisomal primary ami 100.0 2E-186 6E-191 1572.2 68.9 624 26-670 21-664 (692)
3 3loy_A Copper amine oxidase; T 100.0 1E-183 4E-188 1541.0 68.7 614 27-667 1-633 (633)
4 1w6g_A Phenylethylamine oxidas 100.0 2E-181 6E-186 1530.1 65.0 616 25-669 5-629 (646)
5 1spu_A Copper amine oxidase; o 100.0 2E-177 5E-182 1522.9 68.8 629 22-668 88-727 (727)
6 1tu5_A Copper amine oxidase, l 100.0 7E-161 2E-165 1377.2 57.2 610 25-666 38-705 (746)
7 1w7c_A Lysyl oxidase; AMNE oxi 100.0 3E-160 9E-165 1370.8 60.1 606 24-666 15-692 (747)
8 3hi7_A Amiloride-sensitive ami 100.0 2E-152 6E-157 1301.8 63.1 614 27-666 10-693 (731)
9 3pgb_A Putative uncharacterize 100.0 2E-150 5E-155 1286.8 62.9 612 24-666 62-736 (797)
10 2cs7_A Pneumococcal histidine 18.1 43 0.0015 26.2 1.2 18 29-46 37-54 (55)
No 1
>1ksi_A Copper amine oxidase; PEA seedling, oxidoreductase; HET: TPQ NAG; 2.20A {Pisum sativum} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w2z_A*
Probab=100.00 E-value=2.5e-187 Score=1581.00 Aligned_cols=638 Identities=54% Similarity=1.002 Sum_probs=596.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEccCCCHHHHHhhhhcCCCCCCCCEEEEEEEeCCeeEEEEEeCC
Q 005872 27 YHPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETTTNPPRQAFVIARIDHQTHELIVDLS 106 (672)
Q Consensus 27 ~HPldpLt~~Ei~~a~~~v~~~~~~~~~~~~~f~~I~L~eP~K~~vl~~l~~~~~~~p~R~A~vvi~~~~~~~E~vV~l~ 106 (672)
+|||||||++||++|++||+++.+. +...++|++|+|.||+|++|++||+..+.++|+|+|+|+++++++++|++|+|+
T Consensus 2 ~HPldpLs~~Ei~~a~~iv~~~~~~-~~~~~~F~~i~L~EP~K~~v~~~l~~~~~~~P~R~A~vv~~~~~~~~E~vV~L~ 80 (642)
T 1ksi_A 2 QHPLDPLTKEEFLAVQTIVQNKYPI-SNNRLAFHYIGLDDPEKDHVLRYETHPTLVSIPRKIFVVAIINSQTHEILINLR 80 (642)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHHSCT-TTCCEEEEEEEECCCCHHHHHHHHHCGGGCCCCCEEEEEEEETTEEEEEEEETT
T ss_pred CCCCCCCCHHHHHHHHHHHHhcccC-CCCceEEEEEECCCCCHHHHHHHHhhcCCCCCCcEEEEEEEeCCeEEEEEEECC
Confidence 5999999999999999999998764 235789999999999999999998543345689999999999999999999999
Q ss_pred CCeEEEEEeeCCCCCCCCCHHHHHHHHHHhhcCchHHHHHHHhCCCCcceEEccccccccCCccccCCCCceEEEEEEEE
Q 005872 107 LQEIASKRIYSGYGYPMFTFEDQENADKLAFTYPPFVASIRRRGLKLEEVVCESFSVGWYGAEEEEGKNKKRIVKVMCYY 186 (672)
Q Consensus 107 ~~~v~~~~~~~~~~~p~~~~ee~~~~e~~~~~~p~~~~a~~~~g~~~~~v~~d~~~~G~~~~~~~~~~~~~R~~~~~~f~ 186 (672)
.+++++++..+..+||+++.||+.+++++++++|.|+++|+++||++.+|.|++|++||++.. + ++|++|++||+
T Consensus 81 ~~~v~~~~~~~~~g~p~~~~~E~~~~e~~~~~~p~~~~~~~~~gl~~~~v~~~pw~~g~~~~~--~---~~Rl~~~~~~~ 155 (642)
T 1ksi_A 81 IRSIVSDNIHNGYGFPILSVDEQSLAIKLPLKYPPFIDSVKKRGLNLSEIVCSSFTMGWFGEE--K---NVRTVRLDCFM 155 (642)
T ss_dssp TTEEEEEEECCSSCBCCCCHHHHHHHTTGGGGCHHHHHHHHHTTCCGGGEEEEEECCCCCSCS--C---CCCEEEEEEEE
T ss_pred CCcEEEEEeccCCCcCCCCHHHHHHHHHHhhcCHHHHHHHHhcCCCccceEEecccccCCCCC--C---CcEEEEEEEEE
Confidence 999998776665569999999999999999999999999999999999999999999987632 2 58999999999
Q ss_pred ecCCCCCccCCcCCcEEEEecCccEEEEEeCCceeecCCCCCCCCccccCCCCCCCCCCCceeeCCCCCeEEEeceEEee
Q 005872 187 MNGTVNLFMRPIEGISMTVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKPPFRQSLKAITVVQPDGPSFTIDGHMIRW 266 (672)
Q Consensus 187 ~~~~~n~ya~Pl~gl~~~vD~~~~kv~~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~lkp~~i~QPeG~sf~v~g~~V~w 266 (672)
+.+++|+|+|||+||+++||+++|||++|++.+.+++|+.++.+|++..+.+++|+++|||+|+||||+||+|+|++|+|
T Consensus 156 ~~~~~n~Ya~Pl~Gl~~vvD~~~~~V~~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~lkP~~i~QPeG~sF~V~G~~V~W 235 (642)
T 1ksi_A 156 KESTVNIYVRPITGITIVADLDLMKIVEYHDRDIEAVPTAENTEYQVSKQSPPFGPKQHSLTSHQPQGPGFQINGHSVSW 235 (642)
T ss_dssp CSSCSCGGGSEECSEEEEEETTTTEEEEEEECCCCCCCCCTTCCCCSTTCCSCCCCCCCCBEEECTTCCSCEEETTEEEE
T ss_pred ecCCCcccccccCceEEEEECCCCEEEEEEccCCccCCCCCCCCccccccCCCCCCCCCCceecCCCCCCEEEeCcEEee
Confidence 98889999999999999999999999999988777778777778988776666799999999999999999999999999
Q ss_pred eceEEEEeeeCCCceeEEeeEEeccCCCceeEEEEeeeeeeEEeecCCCCccccccceeecCCCCCCcCccCCCCCCCCC
Q 005872 267 ADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFFDAGEYGYGLCSMTLEPLRDCP 346 (672)
Q Consensus 267 ~~W~f~~~f~~reGlvL~~v~~~D~r~~~~r~v~yrlsl~Em~VpY~dp~~~~~~k~~fD~ge~G~G~~a~~L~~G~DCp 346 (672)
|||+||||||+|||||||||+|+|.++|++||||||+|||||+||||||+++|++|+|||+||||+|.+||+|++|||||
T Consensus 236 ~~W~f~vgf~~reGlvL~dv~y~d~~~g~~r~V~YrlSl~Em~VPYgdP~~~~~~k~~fD~GeyG~G~~a~~L~~GcDCp 315 (642)
T 1ksi_A 236 ANWKFHIGFDVRAGIVISLASIYDLEKHKSRRVLYKGYISELFVPYQDPTEEFYFKTFFDSGEFGFGLSTVSLIPNRDCP 315 (642)
T ss_dssp TTEEEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEBCCCSTTTTTCEECHHHHHCTTTTBCCCCBTTTBC
T ss_pred CCceEEEecCCCcccEEEEEEEecCCCCCceEEEEEeeeeeEEEeCCCCCcccccceeeeccccCccccccccccCCCCC
Confidence 99999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeeeEEecCCCCeeeeCceEEEEEecCCCceeeecccCCCCeeEeeeeeceEEEEEEeEeecccceEEEEEEeeCc
Q 005872 347 PNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGDIMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEFKQSG 426 (672)
Q Consensus 347 g~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~~r~~~~LVvr~i~TVgNYdYi~~w~F~~dG 426 (672)
|+|+|||+++++++|+|++++|||||||+| +||||||+|+++++..++.+|++++||||+|+|||||||||+|+|||||
T Consensus 316 g~i~Y~D~~~~~~~G~p~~~~naiCihE~d-~gilwkH~~~r~~~~~~~~v~r~r~LVvr~i~TV~NYdYif~w~F~qdG 394 (642)
T 1ksi_A 316 PHAQFIDTYVHSANGTPILLKNAICVFEQY-GNIMWRHTENGIPNESIEESRTEVNLIVRTIVTVGNADNVIDWEFKASG 394 (642)
T ss_dssp TTCEEEEEEEECTTCCEEEEEEEEEEEEEE-EEEEEEEEECCSTTCCEEEEEEEEEEEEEEEEEETTEEEEEEEEECTTS
T ss_pred CCCEEeeeEEecCCCCEEEcCCEEEEEecc-CCcceeeccccCCCceeeeeeeccEEEEEEEEeecccceEEEEEEecCc
Confidence 999999999999999999999999999999 9999999999987644456677779999999999999999999999999
Q ss_pred cEEEEEeEeeeeeeeeeeeccCCCCccccccceeccCccccccceeEEeeeecCCCCCCCceEEEEEEEeecCCCCCCcc
Q 005872 427 SIKVTVGLTGMVQVRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRTTRVNDRRSSRK 506 (672)
Q Consensus 427 ~Ie~~v~aTGil~~~~~~~~~~~~~~~~~yGt~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~~~~~p~~ 506 (672)
+||++|+|||||+|+++.+.+.+++++.+|||+|+|+++|++|||+|||||||||||.+|||+++|+++++.+.++||++
T Consensus 395 ~Ie~ev~aTGil~t~~~~~~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG~~Nsv~~~~~~~~~~~~~~np~~ 474 (642)
T 1ksi_A 395 SIKPSIALSGILEIKGTNIKHKDEIKEDLHGKLVSANSIGIYHDHFYIYYLDFDIDGTHNSFEKTSLKTVRIKDGSSKRK 474 (642)
T ss_dssp CEEEEEEEEECCCEEECSCCSGGGCCSCCSEEEEETTEEEECEEEEEEEEEEECTTSSCBEEEEEEEEEEECCSSCSSCS
T ss_pred eEEEEEEEEEEEEecccccccccccccCCCcceecCCcccccceEEEEEeeccCCCCCCCeEEEEeeEecCCCCCCCCCc
Confidence 99999999999999887664322223478999999999999999999999999999999999999999999877799999
Q ss_pred eeEEEEEEeecChhhhhhhcCCCCcEEEEecCCCCCCCCCceeEEEeeCCccccCCCCCChhhhccccccceEEEeeeCC
Q 005872 507 SYWTVDSKTAKTESDARIKLGSEPAELLFVNPNKKTKMGNLIGYRLIPEGVTGALLSSDDHPQIRAAFTNYNVWVTAYNK 586 (672)
Q Consensus 507 ~~~~~~~~~~~te~~a~~~~~~~~r~~~i~N~~~~n~~G~p~gY~l~p~~~~~~~~~~~s~~~~ra~fa~~~lwVT~y~~ 586 (672)
++|++++++++||++|++++++.+|+|+|+|++++|++|+|+||||+|+++++++++++|+..+||+||+|+||||||+|
T Consensus 475 ~~~~~~~t~~~tE~ea~~~~~~~~r~~~i~N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~Ra~fa~~~lwVT~y~d 554 (642)
T 1ksi_A 475 SYWTTETQTAKTESDAKITIGLAPAELVVVNPNIKTAVGNEVGYRLIPAIPAHPLLTEDDYPQIRGAFTNYNVWVTAYNR 554 (642)
T ss_dssp EEEEEEEEECCBGGGGCBCTTSSCEEEEEEEEEEECTTSCEEEEEEECCSCCCCCSCTTSHHHHHTGGGGCSEEEEECCT
T ss_pred ceEEEEEEEccchhhhhhccCCCceEEEEEcCCCcCCCCCeeeEEEccCCcccccCCCcchhhhhhhccccceEEecCCC
Confidence 99999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCccCCCCCCChhhhccCCCceecCCeEEEEEeCcccCCCCCCCCccccceeeeEEEeCCCCCCCCCCCCCCC
Q 005872 587 SEKWAGGLYADQSHGDDTLAVWSNRNRSIENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGFELRPSNFFESNPVLKVKQP 666 (672)
Q Consensus 587 ~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~P~nFFd~nP~ldvp~~ 666 (672)
+|+||+|+|++|+++++++..|+++||+|+|+|||+|||||+||+||+|||||||++++||+|||+|||++||+||+|++
T Consensus 555 ~E~~a~g~y~~qs~~~~gl~~~~~~~~~i~~~DiV~W~t~G~~H~Pr~ED~PvMp~~~~~f~L~P~nFF~~nP~ldvp~~ 634 (642)
T 1ksi_A 555 TEKWAGGLYVDHSRGDDTLAVWTKQNREIVNKDIVMWHVVGIHHVPAQEDFPIMPLLSTSFELRPTNFFERNPVLKTLSP 634 (642)
T ss_dssp TCCCTTCSCCBTCCSSSSHHHHGGGCCBCSSBCEEEEEEEEEEECCCGGGSSSCCCEEEECEEEESSCSSSCTTTTCCCC
T ss_pred CccCCCCCCccCCCCCCChhhhhhCCCccccCCcEEEEecccccCCChhhCCCCccceEEEEEEeCCCCCCCCCccCCCC
Confidence 99999999999999989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 005872 667 KEEYS 671 (672)
Q Consensus 667 ~~~~~ 671 (672)
++.-.
T Consensus 635 ~~~~~ 639 (642)
T 1ksi_A 635 RDVAW 639 (642)
T ss_dssp CBCCC
T ss_pred ccCCC
Confidence 76544
No 2
>3sxx_A Peroxisomal primary amine oxidase; oxidoreductase, peroxisome; HET: GOL; 1.27A {Pichia angusta} PDB: 3sx1_A* 3t0u_A 3n9h_A* 3nbj_A* 3nbb_A* 2oqe_C* 2oov_C* 2oqe_A* 2oov_A* 1ekm_A 1a2v_A*
Probab=100.00 E-value=1.6e-186 Score=1572.18 Aligned_cols=624 Identities=27% Similarity=0.452 Sum_probs=583.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEccCCCHHHHHhhhhcCCCCCCCCEEEEEEEe--CCeeEEEEE
Q 005872 26 QYHPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETTTNPPRQAFVIARI--DHQTHELIV 103 (672)
Q Consensus 26 ~~HPldpLt~~Ei~~a~~~v~~~~~~~~~~~~~f~~I~L~eP~K~~vl~~l~~~~~~~p~R~A~vvi~~--~~~~~E~vV 103 (672)
.+|||||||++||++|++||+++.+. ++++|.+|+|.||+|++|++||++. +++|+|+|+|+++. +++++|++|
T Consensus 21 ~~HPLDpLs~~Ei~~a~~iv~~~~~~---~~~~F~~i~L~EP~K~~v~~~~~~~-~~~p~R~a~v~~~~~~~~~~~e~vV 96 (692)
T 3sxx_A 21 PAHPLDPLSTAEIKAATNTVKSYFAG---KKISFNTVTLREPARKAYIQWKEQG-GPLPPRLAYYVILEAGKPGVKEGLV 96 (692)
T ss_dssp CSSTTSCCCHHHHHHHHHHHHHHTTT---SCEEEEEEEEECCCHHHHHHHHHSC-CCCCCCEEEEEEEETTCSSEEEEEE
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCC---CCcEEEEEECCCCCHHHHHHHHhcC-CCCCCeEEEEEEEECCCCCEEEEEE
Confidence 36999999999999999999987765 6899999999999999999999885 36789999999998 678999999
Q ss_pred eCCCCeEEEEEeeCCCCCCCCCHHHHHHHHHHhhcCchHHHHHHHhCC---CCcceEEccccccccCCccccCCCCceEE
Q 005872 104 DLSLQEIASKRIYSGYGYPMFTFEDQENADKLAFTYPPFVASIRRRGL---KLEEVVCESFSVGWYGAEEEEGKNKKRIV 180 (672)
Q Consensus 104 ~l~~~~v~~~~~~~~~~~p~~~~ee~~~~e~~~~~~p~~~~a~~~~g~---~~~~v~~d~~~~G~~~~~~~~~~~~~R~~ 180 (672)
||+.++|++++.+++ .||+++.||+.+||++|++||+|+++|+|||| ++++|+||||++||++.. +. ++||+
T Consensus 97 dl~~~~v~~~~~~~~-~~p~~~~ee~~~~e~~~~~~p~~~~a~~~rgl~~~~~~~V~~dpw~~G~~~~~-~~---~~Rl~ 171 (692)
T 3sxx_A 97 DLASLSVIETRALET-VQPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGYDERW-GT---GKRLQ 171 (692)
T ss_dssp ETTTTEEEEEEEETT-CCCCCCHHHHHTHHHHHHHCHHHHHHHHHTTCCGGGGGGEEEEEEECCCCTTT-TT---SSCEE
T ss_pred ECCCCeEEEEEECCC-CcCCcCHHHHHHHHHHHHhCHHHHHHHHHcCCCccccceEEEccccccccCCC-CC---CceEE
Confidence 999999999999986 58999999999999999999999999999999 456799999999987643 22 68999
Q ss_pred EEEEEEec-CCCCCccCCcCCcEEEEecCccEEEEEeCCce-eecCCCCCCCCccccCC--CCCCC-CCCCceeeCCCCC
Q 005872 181 KVMCYYMN-GTVNLFMRPIEGISMTVDLDEMKIIGFQDRVT-VPVPKADETEFRESKIK--PPFRQ-SLKAITVVQPDGP 255 (672)
Q Consensus 181 ~~~~f~~~-~~~n~ya~Pl~gl~~~vD~~~~kv~~i~d~~~-~~~p~~~~~~y~~~~~~--~~~r~-~lkp~~i~QPeG~ 255 (672)
|++||+|. +++|+|||||+ |+++||++++||++|++... .|+|+.+..+|+++.+. +++|+ ++|||+|+||||+
T Consensus 172 ~~~~y~r~~~~~N~Ya~Pl~-~~~vvD~~~~~vi~id~~~~~~p~~~~~~~~Y~p~~~~~~~~~r~~d~kP~~i~QPeG~ 250 (692)
T 3sxx_A 172 QALVYYRSDEDDSQYSHPLD-FCPIVDTEEKKVIFIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGV 250 (692)
T ss_dssp EEEEEECSSTTSCGGGCBCS-CEEEEETTTTEEEEEECCSSCCCCCCSCCCCCSHHHHHHHHSSCCCCCCCCEEECTTCC
T ss_pred EEEEEEecCCCCCcccccce-eEEEEECCCCEEEEEecCCCCCCCCCCCCCCCChHHccccCCCCCCCCCCceecCCCCC
Confidence 99999996 58999999999 99999999999999998765 56777777899987654 46788 9999999999999
Q ss_pred eEEEeceEEeeeceEEEEeeeCCCceeEEeeEEeccCCCceeEEEEeeeeeeEEeecCCCCccccccceeecCCCCCCcC
Q 005872 256 SFTIDGHMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFFDAGEYGYGLC 335 (672)
Q Consensus 256 sf~v~g~~V~w~~W~f~~~f~~reGlvL~~v~~~D~r~~~~r~v~yrlsl~Em~VpY~dp~~~~~~k~~fD~ge~G~G~~ 335 (672)
||+|+||+|+||||+||+|||+|||||||||+|+| +|+.||||||+|||||+||||||+++|++|+|||+||||+|.+
T Consensus 251 sF~v~g~~V~W~~W~F~vgf~~reGlvL~dV~y~~--~g~~R~V~YrlSl~Em~VPYgdp~~p~~~k~afD~GeyG~G~~ 328 (692)
T 3sxx_A 251 SFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYND--HGNVRPIFHRISLSEMIVPYGSPEFPHQRKHALDIGEYGAGYM 328 (692)
T ss_dssp SCEEETTEEEETTEEEEEEEETTTEEEEEEEEEEE--TTEEEEEEEEEEEEEEEEEBCCCSTTGGGCEECHHHHTCTTTT
T ss_pred cEEEcCCeEEecCcEEEEecCCCCceEEEEEEEcC--CCcceeeeeeeehheeEEecCCCCchhhhheeeeccccCCCcc
Confidence 99999999999999999999999999999999999 6788999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCcEEeeeEEecCCCCeeeeCceEEEEEecCCCceeeecccCCC--CeeEeeeeeceEEEEEEeEeecc
Q 005872 336 SMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGDIMWRHTEATIP--GKTVREVRQDVSLVVRTVSTFGN 413 (672)
Q Consensus 336 a~~L~~G~DCpg~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~--~~~~~~~r~~~~LVvr~i~TVgN 413 (672)
+|+|++||||||+|+|||+++.+++|+|++++|||||||+| .|+||||++++++ ..+++|+| +||||+|+||||
T Consensus 329 an~L~lGcDCpg~i~YlD~~~~~~~G~p~~~~NaICihE~d-~Gil~kHt~~r~~~~~~~v~r~r---~LVvr~i~TVgN 404 (692)
T 3sxx_A 329 TNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEED-DGLLFKHSDFRDNFATSLVTRAT---KLVVSQIFTAAN 404 (692)
T ss_dssp BCCCTTTTTSCSSCEEEEEEEECTTSCEEEEEEEEEEEEEE-EEEEEEEECGGGTTCSEEEEEEE---EEEEEEEEEETT
T ss_pred ccccccCCCCCCCcEEeeeEEecCCCCEEEecceEEEeecc-CCceEEeeeccCCCceeeEEecc---EEEEEEeeeccc
Confidence 99999999999999999999999999999999999999999 6699999999887 66666666 999999999999
Q ss_pred cceEEEEEEeeCccEEEEEeEeeeeeeeeeeeccCCCCc-cccccceeccCccccccceeEEeeeecCCCCCCCceEEEE
Q 005872 414 YDYVNDWEFKQSGSIKVTVGLTGMVQVRGTTYTHKDHME-EDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSK 492 (672)
Q Consensus 414 YdYi~~w~F~~dG~Ie~~v~aTGil~~~~~~~~~~~~~~-~~~yGt~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d 492 (672)
|||||+|+|||||+||++|+|||||+++++. .++ ..+|||+|+|+++|++|||+|||||||||||.+|||+++|
T Consensus 405 YDYif~w~F~qdG~Ie~ev~aTGil~t~~~~-----~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG~~Nsv~~~d 479 (692)
T 3sxx_A 405 YEYCLYWVFMQDGAIRLDIRLTGILNTYILG-----DDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACD 479 (692)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEECCCCEECC-----TTCCCTTTEEEEETTEEEECEEEEEEEEEEECTTSSCBEEEEEE
T ss_pred eeEEEEEEEecCCeEEEEEEEEEEEEeeeeC-----CCcccCCCcceecCCccccceeEEEEEEeccccCCCCceEEEEE
Confidence 9999999999999999999999999986542 122 4789999999999999999999999999999999999999
Q ss_pred EEEeecCC--CCCCcceeEEEEEEeecChhhhhhhcCC-CCcEEEEecCCCCCCC-CCceeEEEeeCCccccCCCCCChh
Q 005872 493 LRTTRVND--RRSSRKSYWTVDSKTAKTESDARIKLGS-EPAELLFVNPNKKTKM-GNLIGYRLIPEGVTGALLSSDDHP 568 (672)
Q Consensus 493 ~~~~~~~~--~~~p~~~~~~~~~~~~~te~~a~~~~~~-~~r~~~i~N~~~~n~~-G~p~gY~l~p~~~~~~~~~~~s~~ 568 (672)
+++++.+. +.||++++|++++++++||++|++++++ ++|+|+|+|++++|++ |+|+||||+|++++++|++++|+.
T Consensus 480 ~~~~~~~~~~~~np~g~~~~~~~t~~~tE~ea~~~~~~~~~R~~~i~N~~~~N~~sG~pvgYkL~p~~~~~ll~~~~s~~ 559 (692)
T 3sxx_A 480 AKSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVSTQCPPLLAKEGSLV 559 (692)
T ss_dssp EEECSSCTTBTTBTTSCCEEEEEEECCBHHHHCBCCCGGGTCEEEEECTTCCCTTTCSCCEEEEECCCCCCCCSCTTSHH
T ss_pred eEEccCCCCCCCCCCcceeEEEEEEccchhhhhhccCCCCCcEEEEeCCCCcCCCCCccceEEEecCCCCcccCCCCchh
Confidence 99998863 4799999999999999999999999999 9999999999999999 999999999999999999999999
Q ss_pred hhccccccceEEEeeeCCCCCCCCCcCccCCCCC--CChhhhc-cCCCceecCCeEEEEEeCcccCCCCCCCCcccccee
Q 005872 569 QIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGD--DTLAVWS-NRNRSIENKDIVLWYTLGFHHVPYQEDFPVMPTLNG 645 (672)
Q Consensus 569 ~~ra~fa~~~lwVT~y~~~E~~asg~y~~q~~~~--~~l~~~~-~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~ 645 (672)
.+||+||+|+||||||+|+|+||+|+|+||+.++ .||+.|+ ++||+|+|||||+|+|||+||+||+|||||||++++
T Consensus 560 ~~ra~fa~~~lwVT~y~d~E~~aag~y~nQs~g~p~~gl~~w~~~~~e~I~n~DiV~W~t~G~~HiPr~ED~PvMP~~~~ 639 (692)
T 3sxx_A 560 AKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPI 639 (692)
T ss_dssp HHHCGGGGSSEEEEECCTTCCCTTCSSCTTCCSCSSCHHHHHHTTSCSBCSSBCEEEEEEEEEEECCCGGGSSSCCCEEE
T ss_pred hhhchhcccceEEecCCCCccCCCCCCccCCCCCCCCChHHHhhcCCceeecCceEEEEecCcccCCchhcCCCCcceEE
Confidence 9999999999999999999999999999999887 6999999 899999999999999999999999999999999999
Q ss_pred eeEEEeCCCCCCCCCCCCCCCCCCC
Q 005872 646 GFELRPSNFFESNPVLKVKQPKEEY 670 (672)
Q Consensus 646 ~f~L~P~nFFd~nP~ldvp~~~~~~ 670 (672)
||+|||+|||++||+||+|++.+.+
T Consensus 640 gf~LrP~nFFd~NPaldvp~~~~~~ 664 (692)
T 3sxx_A 640 TLMLRPRHFFTENPGLDIQPSYAMT 664 (692)
T ss_dssp EEEEEEESSSSSCTTTTSCCSEEEC
T ss_pred EEEEECCCcCCCCCcccCCCccccc
Confidence 9999999999999999999987654
No 3
>3loy_A Copper amine oxidase; TPQ, oxidoreductase; HET: TPQ TLA; 2.00A {Pichia angusta}
Probab=100.00 E-value=1.2e-183 Score=1541.00 Aligned_cols=614 Identities=27% Similarity=0.446 Sum_probs=570.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEccCCCHHHHHhhhhcC--C--CCCCCCEEEEEEEeCCeeEEEE
Q 005872 27 YHPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNE--T--TTNPPRQAFVIARIDHQTHELI 102 (672)
Q Consensus 27 ~HPldpLt~~Ei~~a~~~v~~~~~~~~~~~~~f~~I~L~eP~K~~vl~~l~~~--~--~~~p~R~A~vvi~~~~~~~E~v 102 (672)
.|||||||++||++|++||+++.+. .++++|.+|+|.||+|++|++||+++ | .++|+|+|+|+++.+++++|++
T Consensus 1 ~HPLdpLs~~Ei~~a~~iv~~~~~~--~~~~~F~~i~L~EP~K~~v~~~l~~~~~g~~~~~p~R~a~v~~~~~~~~~e~v 78 (633)
T 3loy_A 1 VHPYDPISDAELQLTSQLIKDATKG--PERPHFIQIDRLDPPKKDMIRYLEAERTGKPLPHISRMTYVYYYIGLDFYKAL 78 (633)
T ss_dssp CCTTCCCCHHHHHHHHHHHHHHCCS--SSCEEEEEEEECCCCHHHHHHHHHHHHHTCCCCCCCCEEEEEEEETTEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHhhccC--CCCcEEEEEECCCCCHHHHHHHHhhhhcCCCCCCCCcEEEEEEEeCCCEEEEE
Confidence 4999999999999999999987653 25799999999999999999998752 1 2567899999887888999999
Q ss_pred EeCCCCeEEEEEeeCCCCCCCCCHHHHHHHHHHhhcCchHHHHHHHhCC-CCcceEEccccccccCCccccCCCCceEEE
Q 005872 103 VDLSLQEIASKRIYSGYGYPMFTFEDQENADKLAFTYPPFVASIRRRGL-KLEEVVCESFSVGWYGAEEEEGKNKKRIVK 181 (672)
Q Consensus 103 V~l~~~~v~~~~~~~~~~~p~~~~ee~~~~e~~~~~~p~~~~a~~~~g~-~~~~v~~d~~~~G~~~~~~~~~~~~~R~~~ 181 (672)
|||+.++|++++.+++++||+++.||+.+||++|++||+|+++|+|||| +++.|+||||++|+.+ ++ ++|++|
T Consensus 79 Vdl~~~~v~~~~~~~~~~~p~~~~~e~~~~e~~~~~~p~~~~a~~~~gl~~~~~V~~dpw~~G~d~---~~---~~Rl~q 152 (633)
T 3loy_A 79 VNVSYGHIITNQKQPKGVIGPLIAEDIQEIEELATTHPIVKAEIEKLKLPPHVRVVCDPWMNGTDS---KE---DRMLIQ 152 (633)
T ss_dssp EETTTTEEEEEEECCTTCCCCCCHHHHHHHHHHHTTSHHHHHHHHTTCCCTTEEEEEEEEECCCSS---CC---CSCEEE
T ss_pred EECCCCeEEEEEecCCCccCCCCHHHHHHHHHHHHhCHHHHHHHHHcCCCCCceEEEeccccccCC---CC---CcEEEE
Confidence 9999999999999997789999999999999999999999999999999 5699999999999622 23 789999
Q ss_pred EEEEEe---cCCCCCccCCcCCcEEEEecCccEEEEEeCCce------e---ecCCCCCCCCccccCCCCCCCCCCCcee
Q 005872 182 VMCYYM---NGTVNLFMRPIEGISMTVDLDEMKIIGFQDRVT------V---PVPKADETEFRESKIKPPFRQSLKAITV 249 (672)
Q Consensus 182 ~~~f~~---~~~~n~ya~Pl~gl~~~vD~~~~kv~~i~d~~~------~---~~p~~~~~~y~~~~~~~~~r~~lkp~~i 249 (672)
|+||+| ++++|+|||||+ |+++||++++||++|++... . |.++.+..+|.++.+++ .|+++|||+|
T Consensus 153 ~~~y~r~~~~~~~N~Ya~Pl~-~~~vvD~~~~~vi~id~~~~g~~~~~~~~~p~~~~~~~~Y~p~~~~~-~r~d~kp~~i 230 (633)
T 3loy_A 153 CYMYLASAAHPESNHYSLPLK-FSPVFECLTKKFVRMDYLPGGADETVTETQAWDEFPFVEYHPDLNGE-TIVPLKPLIV 230 (633)
T ss_dssp EEEEEEETTCTTCCGGGSBCS-EEEEEETTTCCEEEEEECCCSSSSCCCSCCCCCCCCCCCCSTTTSCC-CCCCCCCCEE
T ss_pred EEEEEecCCCCCccccccccc-eEEEEECCCCEEEEEEecCcCcccccccccCCCCCCCCCcChhHccc-ccCCCCCcce
Confidence 999999 368999999998 88999999999999997411 1 23445567999887644 8999999999
Q ss_pred eCCCCCeEEEeceEEeeeceEEEEeeeCCCceeEEeeEEeccCCCceeEEEEeeeeeeEEeecCCCCccccccceeecCC
Q 005872 250 VQPDGPSFTIDGHMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFFDAGE 329 (672)
Q Consensus 250 ~QPeG~sf~v~g~~V~w~~W~f~~~f~~reGlvL~~v~~~D~r~~~~r~v~yrlsl~Em~VpY~dp~~~~~~k~~fD~ge 329 (672)
+||||+||+|+|++|+||||+||||||+|||||||||+|+| ||||||+|||||+||||||+++|++|+|||+||
T Consensus 231 ~QPeG~sF~v~g~~V~W~~W~f~vgf~~reGlvL~dv~y~g------r~V~YrlSl~Em~VPYgdp~~p~~~k~afD~Ge 304 (633)
T 3loy_A 231 QQPEGPSFNVDGHKISWQGWEFFVIPTVREGFAIYDIHFKG------RSVVYRLSLSEMTVPYGDPRAPFHRKQAFDLGD 304 (633)
T ss_dssp ECTTCCSEEEETTEEEETTEEEEEEEETTTEEEEEEEEETT------EEEEEEEEEEEEEEEBCCCSTTGGGCEEEHHHH
T ss_pred eCCCCCCEEEcCCccccCCcEEEEecCCCcCcEEEeeEECC------EEEEEEEEeeeEEEeCCCCCChhhhheeecccc
Confidence 99999999999999999999999999999999999999843 899999999999999999999999999999999
Q ss_pred CCCCcCccCCCCCCCCCCCcEEeeeEEecCCCCeeeeCceEEEEEecCCCceeeecccCCCCeeEeeeeeceEEEEEEeE
Q 005872 330 YGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGDIMWRHTEATIPGKTVREVRQDVSLVVRTVS 409 (672)
Q Consensus 330 ~G~G~~a~~L~~G~DCpg~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~~r~~~~LVvr~i~ 409 (672)
||+|.+||+|++||||||+|+|||+++.+++|+|++++|||||||+| .|++|||++++++.++++|+| +||||+|+
T Consensus 305 yG~G~~a~~L~~GcDCpg~i~YlD~~~~~~~G~p~~~~naICihE~d-~Gi~~kHt~~r~~~~~v~r~r---~LVvr~i~ 380 (633)
T 3loy_A 305 CGFGATGNSLALGCDCLGVIKYMDCRRVNTNGDSVLIPNTVCLHEQD-GGLLYKHTNYRTNVPVIARRR---EFVVQTIA 380 (633)
T ss_dssp TCTTTTBCCSTTTTCSCSSEEEEEEEEECTTSCEEEEEEEEEEEEEE-EEEEEEEECTTTCCEEEEEEE---EEEEEEEE
T ss_pred cCccccccCCccCCCCCCCcEEeeeEEecCCCCEEEecceEEEEecc-CCceeeeccccCCceeEEEee---EEEEEEEe
Confidence 99999999999999999999999999999999999999999999999 779999999999887777777 99999999
Q ss_pred eecccceEEEEEEeeCccEEEEEeEeeeeeeeeeeeccCCCCccccccceeccCccccccceeEEeeeecCCCCCCCceE
Q 005872 410 TFGNYDYVNDWEFKQSGSIKVTVGLTGMVQVRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFV 489 (672)
Q Consensus 410 TVgNYdYi~~w~F~~dG~Ie~~v~aTGil~~~~~~~~~~~~~~~~~yGt~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~ 489 (672)
|||||||||+|+|||||+||++|+|||||++++. +++++.+|||+|+|+++|++|||+|||||||||||.+|||+
T Consensus 381 TVgNYdYif~w~F~~dG~Ie~ev~aTGil~t~~~-----~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG~~Nsv~ 455 (633)
T 3loy_A 381 TVANAEYMLNIIFDQAGEIRIHVRATGILSTMPL-----DKDVTVPWGTNVGPRVMAAYHQHMLSFRIDPAVDGYENTVV 455 (633)
T ss_dssp EETTEEEEEEEEEETTSCEEEEEEEEECCCCEEC-----CTTCCCTTEEEEETTEEEECEEEEEEEEEEECTTSSCBEEE
T ss_pred eccceeEEEEEEEecCCeEEEEEEEEEEEeeeec-----CCcccCCCcceecCCccccceeEEEEEEecccccCCCCEEE
Confidence 9999999999999999999999999999998654 22235789999999999999999999999999999999999
Q ss_pred EEEEEEeecCCCCCCcceeEEEEEEeecChhhhhhhcCC-CCcEEEEecCCCCCCC-CCceeEEEeeCCccccCCCCCCh
Q 005872 490 RSKLRTTRVNDRRSSRKSYWTVDSKTAKTESDARIKLGS-EPAELLFVNPNKKTKM-GNLIGYRLIPEGVTGALLSSDDH 567 (672)
Q Consensus 490 ~~d~~~~~~~~~~~p~~~~~~~~~~~~~te~~a~~~~~~-~~r~~~i~N~~~~n~~-G~p~gY~l~p~~~~~~~~~~~s~ 567 (672)
++|+++++.....||++++|+++++++++| |++++++ ++|+|+|+|++++|++ |+|+||||+|++++++|+.++|+
T Consensus 456 ~~d~~~~~~~~~~nP~g~~~~~~~t~l~~e--a~~~~~~~~~r~~~i~N~~~~N~~~G~p~gYkl~p~~~~~ll~~~~s~ 533 (633)
T 3loy_A 456 FDDVIRMEKNTKLNPYNVGFVTERTVVEKP--GYVEQSPFTNRSYKIINENKINPISKKPVAYKIMMPARQMLLADEDSY 533 (633)
T ss_dssp EEEEEECCSSSSSSTTSCCEEEEEEECCSS--EEECCCGGGTCEEEEEEEEEECTTTCSEEEEEEECCCCCCCCSCSSSH
T ss_pred EEeeeecCCCCCCCCCCcceEEEEEEeccc--cccccCCCCccEEEEECCCCcCCCCCccceEEEccCCCCcccCCCCch
Confidence 999999988655899999999999999876 6799999 9999999999999996 99999999999999999999999
Q ss_pred hhhccccccceEEEeeeCCCCCCCCCcCccCCCCCCChhhhccCCCceecCCeEEEEEeCcccCCCCCCCCccccceeee
Q 005872 568 PQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDDTLAVWSNRNRSIENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGF 647 (672)
Q Consensus 568 ~~~ra~fa~~~lwVT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f 647 (672)
..+||+||+|+||||||+|+|+||+|+|+||+.+++||+.|+++||+|+|||||+|+|||+||+||+|||||||++++||
T Consensus 534 ~~~Ra~fa~~~lwVT~y~d~E~~aag~y~nQs~~~~gl~~w~~~~e~i~n~DiV~W~t~G~~HiPr~ED~PvMP~~~~~f 613 (633)
T 3loy_A 534 NNKRAQFATQQVWVTKYRDNELYAAGEFTNQSQTDTGLGVWARRDENVRNDNPVVWATLGFTHIPRVEDFPVMPVEAHEI 613 (633)
T ss_dssp HHHHCGGGGSSEEEEECCTTCCCTTCSCCTTCSSCCSHHHHTTCCCCCTTBCEEEEEEEEEEECCCGGGCSSEEEEEEEE
T ss_pred hhhccchhhcceEEecCCCCccccCCCCccCCCCCCChHHHhcCCCccccCceEEEEecCcccCCCcccCCCCccceeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCCCCCC
Q 005872 648 ELRPSNFFESNPVLKVKQPK 667 (672)
Q Consensus 648 ~L~P~nFFd~nP~ldvp~~~ 667 (672)
+|||+|||++||+||||+|+
T Consensus 614 ~LrP~nFFd~nP~ldvp~s~ 633 (633)
T 3loy_A 614 ALVPFGFFDKNPALSVPQST 633 (633)
T ss_dssp EEEEESSSSSCGGGGSCCCC
T ss_pred EEEcCCcCCCCccccCCCCC
Confidence 99999999999999999985
No 4
>1w6g_A Phenylethylamine oxidase; copper containing, metal-binding, oxidoreductase, TPQ, quinone, holoenzyme; HET: TPQ GOL; 1.55A {Arthrobacter globiformis} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w6c_A* 1rjo_A* 2bt3_A* 2cfd_A* 2cfg_A* 2cfk_A* 2cfl_A* 2cfw_A* 2cg0_A* 2cg1_A* 1w4n_A* 1sih_A* 1sii_A* 1w5z_A* 3kii_A* 3kn4_A* 1iqy_A* 1avl_A* 1av4_A* 1iqx_A* ...
Probab=100.00 E-value=1.8e-181 Score=1530.08 Aligned_cols=616 Identities=25% Similarity=0.450 Sum_probs=572.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEccCCCHHHHHhhhhcCCCCCCCCEEEEEEEe--CCeeEEEE
Q 005872 25 HQYHPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETTTNPPRQAFVIARI--DHQTHELI 102 (672)
Q Consensus 25 ~~~HPldpLt~~Ei~~a~~~v~~~~~~~~~~~~~f~~I~L~eP~K~~vl~~l~~~~~~~p~R~A~vvi~~--~~~~~E~v 102 (672)
..+|||||||++||++|++||+++... .++++|++|+|+||+|++ + .++|+|+|+|++++ +++++|++
T Consensus 5 ~~~HPldpLs~~Ei~~a~~iv~~~~~~--~~~~~F~~i~L~eP~K~~------g--~~~P~R~A~vv~~~~~~~~~~E~v 74 (646)
T 1w6g_A 5 QTASPFRLASAGEISEVQGILRTAGLL--GPEKRIAYLGVLDPARGA------G--SEAEDRRFRVFIHDVSGARPQEVT 74 (646)
T ss_dssp --CCTTCCCCHHHHHHHHHHHHHTTCC--CTTEEEEEEEECCCCSCC------S--SSCCCCEEEEEEEETTSCCCEEEE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcccC--CCCcEEEEEEccCCchhh------C--CCCCCeEEEEEEEECCCCcEEEEE
Confidence 456999999999999999999998763 258999999999999998 3 25789999999998 56899999
Q ss_pred EeCCCCeEEE---EEeeCCCCCCCCCHHHHHHHHHHhhcCchHHHHHHHhCC-CCcceEEccccccccCCccccCCCCce
Q 005872 103 VDLSLQEIAS---KRIYSGYGYPMFTFEDQENADKLAFTYPPFVASIRRRGL-KLEEVVCESFSVGWYGAEEEEGKNKKR 178 (672)
Q Consensus 103 V~l~~~~v~~---~~~~~~~~~p~~~~ee~~~~e~~~~~~p~~~~a~~~~g~-~~~~v~~d~~~~G~~~~~~~~~~~~~R 178 (672)
|+|+.++|++ ++.+++ +||+++.||+.++|++|+++|.|+++|+++|| +++.|+| +|++|||+.+.+. ++|
T Consensus 75 V~L~~~~v~~~~~~~~~~~-~~~~~~~~E~~~~e~~~~~~p~~~~~i~~~gl~~~~~v~~-pw~~g~~~~~~~~---~~R 149 (646)
T 1w6g_A 75 VSVTNGTVISAVELDTAAT-GELPVLEEEFEVVEQLLATDERWLKALAARNLDVSKVRVA-PLSAGVFEYAEER---GRR 149 (646)
T ss_dssp EETTTTEEEEEEECCHHHH-CBCCCCHHHHHHHHHHHTTCHHHHHHHHHTTCCGGGEEEE-EEECCCCSCGGGT---TSC
T ss_pred EECCCCeEEecccceeCCC-ccCCCCHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCeeEE-eecccccCCccCC---CcE
Confidence 9999999998 777774 69999999999999999999999999999999 4677999 9999998755433 789
Q ss_pred EEEEEEEEec-CCCCCccCCcCCcEEEEecCccEEEEEeCCceeecCCCCCCCCccccCCCCCCCCCCCceeeCCCCCeE
Q 005872 179 IVKVMCYYMN-GTVNLFMRPIEGISMTVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKPPFRQSLKAITVVQPDGPSF 257 (672)
Q Consensus 179 ~~~~~~f~~~-~~~n~ya~Pl~gl~~~vD~~~~kv~~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~lkp~~i~QPeG~sf 257 (672)
++|++||+|. +++|+|+|||+||+++||+++|||++|++.+.++.|. +..+|.++.+.++.|+++|||+|+||||+||
T Consensus 150 l~~~~~~~r~~~~~n~Ya~Pl~gl~~vvD~~~~~Vi~v~~~~~~~~p~-~~~~y~~~~~~~~~r~~lkP~~i~QPeGpsF 228 (646)
T 1w6g_A 150 ILRGLAFVQDFPEDSAWAHPVDGLVAYVDVVSKEVTRVIDTGVFPVPA-EHGNYTDPELTGPLRTTQKPISITQPEGPSF 228 (646)
T ss_dssp EEEEEEEECSSTTCCGGGSBCTTEEEEEETTTTEEEEEEECCCCCCCC-SCCCTTCHHHHCSCCCCCCCCCCCCTTCCSC
T ss_pred EEEEEEEEecCCCCCccccccCceEEEEECCCCEEEEEEeCCccCCCC-CCCccchhhcCCCcCCCCCCceecCCCCCce
Confidence 9999999985 5799999999999999999999999999987666665 4569987665446799999999999999999
Q ss_pred EEe-ceEEeeeceEEEEeeeCCCceeEEeeEEeccCCCceeEEEEeeeeeeEEeecCCCCccccccceeecCCCCCCcCc
Q 005872 258 TID-GHMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFFDAGEYGYGLCS 336 (672)
Q Consensus 258 ~v~-g~~V~w~~W~f~~~f~~reGlvL~~v~~~D~r~~~~r~v~yrlsl~Em~VpY~dp~~~~~~k~~fD~ge~G~G~~a 336 (672)
+|+ |++|+||||+||||||+|||||||||+|+| .|+.||||||+|||||+||||||+++|++|+|||+||||+|.+|
T Consensus 229 ~V~~G~~V~W~~W~F~vgfn~ReGlvL~dV~y~~--~g~~R~V~YrlSlsEm~VPYgdp~p~~~~k~afD~GeyG~G~~a 306 (646)
T 1w6g_A 229 TVTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRD--GDRLRPIINRASIAEMVVPYGDPSPIRSWQNYFDTGEYLVGQYA 306 (646)
T ss_dssp EEETTTEEEETTEEEEEEEETTTEEEEEEEEEEE--TTEEEEEEEEEEEEEEEEEBCCCCTTTTTCEEECCCCCCGGGGB
T ss_pred EEeCCCEEEeCCCEEEEecCCCcceEEEEEEEcC--CCCceEEEEEeeeeEEEEeCCCCCchhhcceeeeccCcCCcccc
Confidence 999 999999999999999999999999999998 56789999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCcEEeeeEEecCCCCeeeeCceEEEEEecCCCceeeecccCCCCeeEeeeeeceEEEEEEeEeecccce
Q 005872 337 MTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGDIMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDY 416 (672)
Q Consensus 337 ~~L~~G~DCpg~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~~r~~~~LVvr~i~TVgNYdY 416 (672)
|+|++||||||+|+|||+++++++|+|++++|||||||+| .||||||+|++++.++++|+| +||||+|+|||||||
T Consensus 307 n~L~lGcDCpg~i~Y~D~~~~~~~G~p~~~~naICihE~d-~GilwkH~~~r~~~~~v~r~r---~LVvr~i~Tv~NYdY 382 (646)
T 1w6g_A 307 NSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEED-WGILAKHSDLWSGINYTRRNR---RMVISFFTTIGNADY 382 (646)
T ss_dssp CCCCBTTTBCSSCEEECCEEECTTSCEEECTTCEEEEEEE-EEEEEEEECTTTCCEEEEEEE---EEEEEEEEEETTEEE
T ss_pred cccccCCCCCCCCEEEeEEEEcCCCCEEEcCCEEEEeecc-CCcceeeecccCCceeeeccc---EEEEEEEeeccccce
Confidence 9999999999999999999999999999999999999999 559999999999766655555 999999999999999
Q ss_pred EEEEEEeeCccEEEEEeEeeeeeeeeeeeccCCCCccccccceeccCccccccceeEEeeeecCCCCCCCceEEEEEEEe
Q 005872 417 VNDWEFKQSGSIKVTVGLTGMVQVRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRTT 496 (672)
Q Consensus 417 i~~w~F~~dG~Ie~~v~aTGil~~~~~~~~~~~~~~~~~yGt~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~ 496 (672)
||+|+|||||+||++|+|||||+++++.. ++.+|||+|+|+++|++|||+|+|||||||||.+|||+++|++++
T Consensus 383 i~~w~F~~dG~Ie~ev~aTGil~t~~~~~------~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~ 456 (646)
T 1w6g_A 383 GFYWYLYLDGTIEFEAKATGVVFTSAFPE------GGSDNISQLAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVVRQ 456 (646)
T ss_dssp EEEEEEETTSCEEEEEEEEECCCCEECCT------TCCSSEEEEETTEEEECEEEEEEEEEEECTTSSCBEEEEEEEEEC
T ss_pred EEEEEEecCCeEEEEEEEEEEEeeeecCC------ccCCCcceecCCcccccceEEEEEeecccccCCCCEEEEEeeEec
Confidence 99999999999999999999999876421 247899999999999999999999999999999999999999998
Q ss_pred ecCCCCCCcceeEEEEEEeecChhhhhhhcCC-CCcEEEEecCCCCCCCCCceeEEEeeCCccccCCCCCChhhhccccc
Q 005872 497 RVNDRRSSRKSYWTVDSKTAKTESDARIKLGS-EPAELLFVNPNKKTKMGNLIGYRLIPEGVTGALLSSDDHPQIRAAFT 575 (672)
Q Consensus 497 ~~~~~~~p~~~~~~~~~~~~~te~~a~~~~~~-~~r~~~i~N~~~~n~~G~p~gY~l~p~~~~~~~~~~~s~~~~ra~fa 575 (672)
+.+ +.||++++|+++++++++|++|++++++ ++|+|+|+|++++|++|+|+||||+|+++++++++++|+..+||+|+
T Consensus 457 ~~~-~~np~~~~~~~~~t~~~tE~ea~~~~~~~~~r~~~i~N~~~~N~~G~p~gYkl~~~~~~~~l~~~~s~~~~ra~fa 535 (646)
T 1w6g_A 457 TMG-PGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADPGSSIARRAAFA 535 (646)
T ss_dssp CSB-TTBTTSCCEEEEEEEECBGGGCEECCCGGGTCEEEEEEEEEECTTSCEEEEEEEECCCCCCCSCTTSHHHHHTGGG
T ss_pred cCC-CCCCCCceeEEEEEEccchhhhhhccCCCCCcEEEEeCCCCcCCCCCeeeEEEccCCcccccCCCCcccccccccc
Confidence 875 5899999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred cceEEEeeeCCCCCCCCCcCccCCCCCCChhhhccCCCceecCCeEEEEEeCcccCCCCCCCCccccceeeeEEEeCCCC
Q 005872 576 NYNVWVTAYNKSEKWAGGLYADQSHGDDTLAVWSNRNRSIENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGFELRPSNFF 655 (672)
Q Consensus 576 ~~~lwVT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~P~nFF 655 (672)
+|+||||||+|+|+||+|+|+||+.++++|+.|+++||+|+|+|||||||||+||+||+|||||||++++||+|||+|||
T Consensus 536 ~~~lwVT~y~d~E~~aag~y~nQs~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~PvMP~~~~~f~L~P~nFF 615 (646)
T 1w6g_A 536 TKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFF 615 (646)
T ss_dssp GSSEEEEECCTTCCCTTCSCCBTCCSSSSHHHHHTTCCBCTTBCEEEEEEEEEEECCCGGGSSSEEEEEEEEEEEESSCS
T ss_pred ccceEEeccCCCccccCCCCcccCCCCCChhHHhhCCCCcccCceEEEEeCccccCCCccccCCCCCceEEEEEEecCcC
Confidence 99999999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCC
Q 005872 656 ESNPVLKVKQPKEE 669 (672)
Q Consensus 656 d~nP~ldvp~~~~~ 669 (672)
++||+||+|+++++
T Consensus 616 ~~nP~ldvp~~~~~ 629 (646)
T 1w6g_A 616 DRSPVLDVPANPSQ 629 (646)
T ss_dssp SSCTTTTCCCC---
T ss_pred CCCCCccCCCcccc
Confidence 99999999999875
No 5
>1spu_A Copper amine oxidase; oxidoreductase, TPQ, periplasmic, signal; HET: PAQ; 2.00A {Escherichia coli} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 d.82.1.1 PDB: 1d6y_A* 1d6u_A* 1d6z_A* 2wgq_A 1oac_A* 1dyu_A* 2w0q_A* 2wo0_A* 2wof_A* 2woh_A* 1lvn_A* 1jrq_A* 1qak_A* 1qaf_A* 1qal_A*
Probab=100.00 E-value=1.6e-177 Score=1522.87 Aligned_cols=629 Identities=32% Similarity=0.584 Sum_probs=571.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEccCCCHHHHHhhhhcCCCCCCCCEEEEEEEeCCeeEEE
Q 005872 22 VPSHQYHPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETTTNPPRQAFVIARIDHQTHEL 101 (672)
Q Consensus 22 ~~~~~~HPldpLt~~Ei~~a~~~v~~~~~~~~~~~~~f~~I~L~eP~K~~vl~~l~~~~~~~p~R~A~vvi~~~~~~~E~ 101 (672)
+....+|||||||++||++|+++|+++... .++++|.+|+|+||+|++||+||..+++++|+|+|+|+++++++++|+
T Consensus 88 ~~~~~~HPLdpLs~~Ei~~a~~il~~~~~~--~~~~~F~~i~L~eP~K~~vl~~~~~~~~~~p~R~A~vv~~~~~~~~e~ 165 (727)
T 1spu_A 88 QVEKRPHPLNALTADEIKQAVEIVKASADF--KPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKADVIMLDGKHIIEA 165 (727)
T ss_dssp ECCSSCCTTCCCCHHHHHHHHHHHHTSTTC--CTTCEEEEEEEECCCHHHHHHHHHHCCCCCCCCEEEEEEEETTEEEEE
T ss_pred eecccCCCCCcCCHHHHHHHHHHHHhcccC--CCCcEEEEEEecCCCHHHHHhHHhcCCCCCCCeEEEEEEEeCCeEEEE
Confidence 334567999999999999999999987543 257899999999999999999975433356899999999999999999
Q ss_pred EEeCCCCeEEEEEeeCCCCCCCCCHHHHHHHHHHhhcCchHHHHHHHhCC-CCcceEEccccccccCCccccCCCCceEE
Q 005872 102 IVDLSLQEIASKRIYSGYGYPMFTFEDQENADKLAFTYPPFVASIRRRGL-KLEEVVCESFSVGWYGAEEEEGKNKKRIV 180 (672)
Q Consensus 102 vV~l~~~~v~~~~~~~~~~~p~~~~ee~~~~e~~~~~~p~~~~a~~~~g~-~~~~v~~d~~~~G~~~~~~~~~~~~~R~~ 180 (672)
+|+|+++++++++.+++ +||+++.||+.++|++|+++|.|+++|+++|+ ++++|+||+|++|||+.+.+. .+++|++
T Consensus 166 vV~l~~~~v~~~~~~~~-~~~~~~~~e~~~~e~~~~~~p~~~~~~~~~gl~~~~~v~~dpw~~g~~~~~~~~-~~~~R~~ 243 (727)
T 1spu_A 166 VVDLQNNKLLSWQPIKD-AHGMVLLDDFASVQNIINNSEEFAAAVKKRGITDAKKVITTPLTVGYFDGKDGL-KQDARLL 243 (727)
T ss_dssp EEETTTTEEEEEEEETT-CCCCCCHHHHHHHHHHHHHCHHHHHHHHHTTCSCTTSEEEEEECCCCCTTTTCC-CSSSCEE
T ss_pred EEeCCCCceEEEEeCCC-cCCCCCHHHHHHHHHHHHhCHHHHHHHHHhCCCccceEEEccccccccCCCCCC-CCCcEEE
Confidence 99999999999998884 69999999999999999999999999999999 789999999999988744321 1268999
Q ss_pred EEEEEEecCCCCCccCCcCCcEEEEecCccEEEEEeCCceeecCCCCCCCCccccCCCCCCCCCCCceeeCCCCCeEEEe
Q 005872 181 KVMCYYMNGTVNLFMRPIEGISMTVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKPPFRQSLKAITVVQPDGPSFTID 260 (672)
Q Consensus 181 ~~~~f~~~~~~n~ya~Pl~gl~~~vD~~~~kv~~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~lkp~~i~QPeG~sf~v~ 260 (672)
|++||++.+++|+|+|||+||+++||+++|||++|++.+.+++|.. ..+|++.. +.|+++|||+|+||||+||+|+
T Consensus 244 ~~~~~~~~~~~n~Ya~Pl~g~~~vvD~~~~~V~~i~~~~~~~~p~~-~~~y~~~~---~~r~~lkP~~i~QPeG~sF~v~ 319 (727)
T 1spu_A 244 KVISYLDVGDGNYWAHPIENLVAVVDLEQKKIVKIEEGPVVPVPMT-ARPFDGRD---RVAPAVKPMQIIEPEGKNYTIT 319 (727)
T ss_dssp EEEEEECCSSSCGGGSBCTTEEEEEETTTTEEEEEEECCCCCCCCS-CCCSSSTT---EECCCCCCCEEECTTCCSEEEE
T ss_pred EEEEEEECCCCCccccCccceEEEEecccCEEEEEEcCCccccCCC-CCCccccc---cccCCCCCccccCCCCCCEEEC
Confidence 9999997667999999999999999999999999998776666654 34687653 4699999999999999999999
Q ss_pred ceEEeeeceEEEEeeeCCCceeEEeeEEeccCCCceeEEEEeeeeeeEEeecCCCCccccccceeecCCCCCCcCccCCC
Q 005872 261 GHMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFFDAGEYGYGLCSMTLE 340 (672)
Q Consensus 261 g~~V~w~~W~f~~~f~~reGlvL~~v~~~D~r~~~~r~v~yrlsl~Em~VpY~dp~~~~~~k~~fD~ge~G~G~~a~~L~ 340 (672)
|++|+||||+||||||+|||||||||+|+| +|+.||||||+|||||+||||||+++|++|+|||+||||+|.+||+|+
T Consensus 320 g~~V~W~~W~F~vgf~~reGlvL~dV~y~~--~g~~r~V~YrlSl~Em~VPYgdp~~~~~~k~~fD~GeyG~G~~a~~L~ 397 (727)
T 1spu_A 320 GDMIHWRNWDFHLSMNSRVGPMISTVTYND--NGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYLDSGDYGMGTLTSPIA 397 (727)
T ss_dssp TTEEEETTEEEEEEEETTTEEEEEEEEEEE--TTEEEEEEEEEEEEEEEEEBCCCSTTTTTCEECHHHHHCTTTTBCCCC
T ss_pred CCccccCCcEEEEecCCCCceEEEEEEEcC--CCceEEEEEEeEeeEEEEeCCCCCCchhcceeeeccCcCCcccccccc
Confidence 999999999999999999999999999998 567899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcEEeeeEEecCCCCeeeeCceEEEEEecCCCceeeecccCCCCeeEeeeeeceEEEEEEeEeecccceEEEE
Q 005872 341 PLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGDIMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDW 420 (672)
Q Consensus 341 ~G~DCpg~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~~r~~~~LVvr~i~TVgNYdYi~~w 420 (672)
+||||||+|+|||+++.+++|+|++++|||||||+| .||||||++++.. ..+++ +++||||+|+|||||||||+|
T Consensus 398 lGcDCpg~i~Y~D~~~~~~~G~p~~~~naiCi~E~d-~G~l~kH~~~~~~-~~~~r---~r~LVv~~i~Tv~NYdYi~~w 472 (727)
T 1spu_A 398 RGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERY-AGPEYKHQEMGQP-NVSTE---RRELVVRWISTVGNYDYIFDW 472 (727)
T ss_dssp TTTTSCTTCEEEEEEEECTTSCEEEEEEEEEEEEEE-EEEEEEECCTTSC-CEEEE---EEEEEEEEEEEETTEEEEEEE
T ss_pred cCCCCCCCCEEeeeEEEcCCCCEEEeCCeEEEeccc-CCcceeeeccCCC-ceeee---ceEEEEEEEEeecccceEEEE
Confidence 999999999999999999999999999999999999 5699999999853 44444 449999999999999999999
Q ss_pred EEeeCccEEEEEeEeeeeeeeeeeeccCCCC---ccccccceeccCccccccceeEEeeeecCCCCCCCceEEEEEEEee
Q 005872 421 EFKQSGSIKVTVGLTGMVQVRGTTYTHKDHM---EEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRTTR 497 (672)
Q Consensus 421 ~F~~dG~Ie~~v~aTGil~~~~~~~~~~~~~---~~~~yGt~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~ 497 (672)
+|||||+||++|+|||||+++++.++...+. ++.+|||+|+|+++|++|||+|||||||||||.+|||+++|+++++
T Consensus 473 ~F~~dG~I~~ev~aTGil~~~~~~~t~~~~~~~~~~~~yGt~v~~~~~a~~HqH~f~~RlD~dVdG~~Nsv~~~d~~~~~ 552 (727)
T 1spu_A 473 IFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKP 552 (727)
T ss_dssp EEETTSCEEEEEEEEECCCEEECSCSSTTSTTHHHHTTTEEEEETTEEEECEEEEEEEEEEECTTSSEEEEEEEEEEEEE
T ss_pred EEecCceEEEEEEEEEEEEeccccccccccccccccCCCcceecCCcccccceeEEEEeecccccCCCCeEEEEeeEEcc
Confidence 9999999999999999999876532222111 2368999999999999999999999999999999999999999988
Q ss_pred cCCCCCCcceeEEEEEEeecChhhhhhhcCC-CCcEEEEecCCCCCCCCCceeEEEeeC--Cc----cccCCCCCChhhh
Q 005872 498 VNDRRSSRKSYWTVDSKTAKTESDARIKLGS-EPAELLFVNPNKKTKMGNLIGYRLIPE--GV----TGALLSSDDHPQI 570 (672)
Q Consensus 498 ~~~~~~p~~~~~~~~~~~~~te~~a~~~~~~-~~r~~~i~N~~~~n~~G~p~gY~l~p~--~~----~~~~~~~~s~~~~ 570 (672)
.+ +.||++++|++++++++||++|++++++ ++|+ |+|++++|++|+|+||||+|. .+ ++++++++|++.+
T Consensus 553 ~~-~~np~~~~~~~~~t~~~tE~~a~~~~~~~~~r~--i~n~~~~N~~G~p~gYkl~~~~~~~~~~~~~~l~~~~s~~~~ 629 (727)
T 1spu_A 553 NT-AGGPRTSTMQVNQYNIGNEQDAAQKFDPGTIRL--LSNPNKENRMGNPVSYQIIPYAGGTHPVAKGAQFAPDEWIYH 629 (727)
T ss_dssp CC-SCSSCSEEEEEEEEEECBHHHHSBCCCTTSEEE--EEEEEEECTTSCEEEEEEEEEEEESSCBCCSCSSCTTCHHHH
T ss_pred CC-CCCCCCceeEEEEEEccchhhhhhccCCCCcEE--EeCCCCcCCCCCeeeEEEecCCCCccccccccccCCcchhhh
Confidence 75 4799999999999999999999999999 7777 999999999999999999993 33 5688999999999
Q ss_pred ccccccceEEEeeeCCCCCCCCCcCccCCCCCCChhhhccCCCceecCCeEEEEEeCcccCCCCCCCCccccceeeeEEE
Q 005872 571 RAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDDTLAVWSNRNRSIENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGFELR 650 (672)
Q Consensus 571 ra~fa~~~lwVT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~ 650 (672)
||+||+|+||||||+|+|+||+|+|++|+++++||+.|+++||+|+|+|||+|||||+||+||+|||||||++++||+||
T Consensus 630 ra~fa~~~lwVT~y~d~E~~a~g~y~~q~~~~~gl~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~ 709 (727)
T 1spu_A 630 RLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLK 709 (727)
T ss_dssp HCGGGGCSEEEEECCTTCCCTTCSCCTTCSSCCSHHHHHTTCCBCSSEEEEEEEEEEEEECCCGGGSSSEEEEEEEEEEE
T ss_pred hhcccccceEEeccCCcccCCCCCCccCCCCCCCHHHHhhCCCccccCCcEEEEecccccCCChhhCCCCcccEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCCCCCCC
Q 005872 651 PSNFFESNPVLKVKQPKE 668 (672)
Q Consensus 651 P~nFFd~nP~ldvp~~~~ 668 (672)
|+|||++||+||+|++++
T Consensus 710 P~nFFd~nPaldvp~~~~ 727 (727)
T 1spu_A 710 PWNFFDETPTLGALKKDK 727 (727)
T ss_dssp EESSSSSCTTSCCBC---
T ss_pred eCCCCCCCCCcCCCCCCC
Confidence 999999999999999853
No 6
>1tu5_A Copper amine oxidase, liver isozyme; oxidoreductase, quinoenzyme, TPQ; HET: TPQ NAG NDG; 2.37A {Bos taurus} PDB: 2pnc_A* 3ala_A* 2y73_A* 1pu4_A* 1us1_A* 2y74_A* 2c10_A* 2c11_A*
Probab=100.00 E-value=7.2e-161 Score=1377.20 Aligned_cols=610 Identities=23% Similarity=0.327 Sum_probs=509.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcC---CC-----CCCCceEEEEEEccCCCHHHHHhhhhcCCCCCCCCEEEEEEEeC-
Q 005872 25 HQYHPLDSLTPSEFSQIRSIVTKAY---PE-----SSTHKLTFQYVGLEEPSKQTVISWLKNETTTNPPRQAFVIARID- 95 (672)
Q Consensus 25 ~~~HPldpLt~~Ei~~a~~~v~~~~---~~-----~~~~~~~f~~I~L~eP~K~~vl~~l~~~~~~~p~R~A~vvi~~~- 95 (672)
..+|||||||++||++++++|+++. +. +..++ +|++|+|+||+|++||+||++++ ++|+|+|+|+++++
T Consensus 38 ~~~~~~~~Ls~~E~~~V~~~L~~~~~l~L~~~~~a~~~dn-~i~~IeL~~P~K~~vL~~Ld~~~-~~P~R~A~vv~~~~~ 115 (746)
T 1tu5_A 38 DQSQLFADLSREELTTVMSFLTQQLGPDLVDAAQARPSDN-CVFSVELQLPPKAAALAHLDRGS-PPPAREALAIVFFGG 115 (746)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHCSSCBCTTTCCTTSE-EEEEEEEECCCHHHHHHHHHHCC-CCCCCEEEEEEEECS
T ss_pred CCCCcCCCCCHHHHHHHHHHHhccCccCccccccCCcccc-EEEEEECCCCCHHHhhhhhcCCC-CCCCccEEEEEEeCC
Confidence 5579999999999999999998875 21 11224 78889999999999999999884 77899999999986
Q ss_pred ---CeeEEEEEe-CCCCeEEEEEeeC--CCCCC----CCCHHHHHHHHHHhhcCchHHHHHHHhCC-CCcc--eEEcccc
Q 005872 96 ---HQTHELIVD-LSLQEIASKRIYS--GYGYP----MFTFEDQENADKLAFTYPPFVASIRRRGL-KLEE--VVCESFS 162 (672)
Q Consensus 96 ---~~~~E~vV~-l~~~~v~~~~~~~--~~~~p----~~~~ee~~~~e~~~~~~p~~~~a~~~~g~-~~~~--v~~d~~~ 162 (672)
+.++|++|+ |+.+++.+....+ ++.+| +++.+|+.++|++|+++|++++++.++|+ ++.+ ++|++|.
T Consensus 116 ~~~~~v~E~vV~PL~~~~~~~~~~~~~~~~~~p~~~r~i~~~E~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~ 195 (746)
T 1tu5_A 116 QPQPNVTELVVGPLPQPSYMRDVTVERHGGPLPYYRRPVLLREYLDIDQMIFNRELPQAAGVLHHCCSYKQGGQKLLTMN 195 (746)
T ss_dssp SSSCEEEEEEEESSSSCCEEEECHHHHHSSCEEGGGSCCCHHHHHHHHHHHHHTTGGGGHHHHHHHHCTTTTCCCEEEEC
T ss_pred CCCCceEEEEecCCCCCcEEEEcccCCCCCcCCcccCCCCHHHHHHHHHHHHHCHHHHHHHHHhcCCCcccCCEEEeCcc
Confidence 357899999 9999864332112 34478 99999999999999999999999998776 3333 7788885
Q ss_pred ccccCCccccCCCCceEEEEEEEEecCCCCCccCCcCCcEEEEecC-----ccEEEEEeCCce-e---------------
Q 005872 163 VGWYGAEEEEGKNKKRIVKVMCYYMNGTVNLFMRPIEGISMTVDLD-----EMKIIGFQDRVT-V--------------- 221 (672)
Q Consensus 163 ~G~~~~~~~~~~~~~R~~~~~~f~~~~~~n~ya~Pl~gl~~~vD~~-----~~kv~~i~d~~~-~--------------- 221 (672)
.|..+ .. .++|++|++||.....+|+|+||| ||+++||++ +|||++|++.+. .
T Consensus 196 ~~p~~---~~--~g~R~~~~~~~r~~~~~n~Y~~Pl-g~~~~vD~~~~D~~~~~V~~i~y~g~~~~s~~el~~~~~~g~~ 269 (746)
T 1tu5_A 196 SAPRG---VQ--SGDRSTWFGIYYNITKGGPYLHPV-GLELLVDHKALDPADWTVQKVFFQGRYYENLAQLEEQFEAGQV 269 (746)
T ss_dssp CSSCS---SS--TTCCEEEEEEEECCSSSCGGGSEE-EEEEEEECCSSSGGGCEEEEEEETTEEESSHHHHHHHHHTTCC
T ss_pred ccCCc---CC--CCcEEEEEEEEEecCCCCccccce-eeEEEEeCCCCCcccCEEEEEEECCCccCchhhhhcccccCCc
Confidence 44222 11 268999999975533389999999 799999996 799999986541 0
Q ss_pred -ecCCCCCCCCcccc--CCCC-CCCCCCCceeeCCCCCeEEEeceEEeeeceEEEEeeeCCCceeEEeeEEeccCCCcee
Q 005872 222 -PVPKADETEFRESK--IKPP-FRQSLKAITVVQPDGPSFTIDGHMIRWADWEFHLSFDVRAGMIISLASIYDLEKQQSR 297 (672)
Q Consensus 222 -~~p~~~~~~y~~~~--~~~~-~r~~lkp~~i~QPeG~sf~v~g~~V~w~~W~f~~~f~~reGlvL~~v~~~D~r~~~~r 297 (672)
++|.. .+|.+.. .... .|.++ ||+|+||||+||+|+|++|+||||+||||||+|||||||||+|. +|
T Consensus 270 ~~~~~p--~~~~~~~~~~~~~~~r~~~-p~~i~QPeG~sF~v~g~~V~W~~W~f~vgf~~reGlvL~dv~y~------gr 340 (746)
T 1tu5_A 270 NVVVIP--DDGTGGFWSLKSQVPPGPT-PPLQFHPQGPRFSVQGNRVASSLWTFSFGLGAFSGPRVFDVRFQ------GE 340 (746)
T ss_dssp CCCCCC--C-----------------------------CEEEETTEEEESSEEEEEEEETTTEEEEEEEEET------TE
T ss_pred ccccCc--cccCcccccccccccCCCC-CcceeCCCCCCEEecCCcccCCCcEEEEecCCCCceEEEeeEEC------Ce
Confidence 11111 1244333 2222 25555 99999999999999999999999999999999999999999983 49
Q ss_pred EEEEeeeeeeEEeecCCCCccccccceeecCCCCCCcCccCCCCCCCCCCCcEEeeeEEecCCCCeeeeCceEEEEEecC
Q 005872 298 RVLYKGHVSEMFVPYMDLTEEWQRRTFFDAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYA 377 (672)
Q Consensus 298 ~v~yrlsl~Em~VpY~dp~~~~~~k~~fD~ge~G~G~~a~~L~~G~DCpg~a~YlD~~~~~~~g~p~~~~naiCi~E~d~ 377 (672)
|||||+|||||+||||||+|.+.+|+|||++ ||+|.+|++|++||||||+|+|||+++++++|+|++++|||||||+|.
T Consensus 341 ~V~YrlSl~Em~VPYgdp~p~~~~~~~~D~~-yG~G~~a~~L~~GcDCpg~i~Y~D~~~~~~~G~p~~~~naiCihE~d~ 419 (746)
T 1tu5_A 341 RLAYEISLQEAGAVYGGNTPAAMLTRYMDSG-FGMGYFATPLIRGVDCPYLATYMDWHFVVESQTPKTLHDAFCVFEQNK 419 (746)
T ss_dssp EEEEEEEEEEEEEEECCSSHHHHHCEEEGGG-TCTTTTBCCCCBTTTBCTTSEEEEEEEEESSSSCEEEEEEEEEEEEEE
T ss_pred eEEEEEEeeeEEeecCCCCchhhcceeeccc-cCcccccccCccCCCCCCCCEEEeeEEecCCCCEEEcCCeEEEEEeeC
Confidence 9999999999999999999999999999986 999999999999999999999999999999999999999999999995
Q ss_pred CCceeeecccCC-CCeeEeeeeeceEEEEEEeEeecccceEEEEEEeeCccEEEEEeEeeeeeeeeeeeccCCCCccccc
Q 005872 378 GDIMWRHTEATI-PGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEFKQSGSIKVTVGLTGMVQVRGTTYTHKDHMEEDVY 456 (672)
Q Consensus 378 ~g~l~kH~~~~~-~~~~~~~~r~~~~LVvr~i~TVgNYdYi~~w~F~~dG~Ie~~v~aTGil~~~~~~~~~~~~~~~~~y 456 (672)
|.|||||+|.+. +.++ ++++++||||+|+|||||||||+|+|||||+||++|+|||||++.. +.. ++.+|
T Consensus 420 G~~lwkH~~~~~~~~~~---v~r~r~LVvr~i~TVgNYdYi~~w~F~qdG~Ie~ev~aTGil~t~~--~~~----~~~~y 490 (746)
T 1tu5_A 420 GLPLRRHHSDFLSHYFG---GVAQTVLVFRSVSTMLNADYVWDMVFYPNGAIEVKLHATGYISSAF--LFG----AARRY 490 (746)
T ss_dssp EEEEEECCCSTTCCCCC---EEEEEEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEEEECCCCEE--CCT----TGGGG
T ss_pred CeeeeeecccccCCcee---eecccEEEEEEEEeecccceEEEEEEecCCcEEEEEEecceEeeee--cCC----CCCCC
Confidence 556999999433 3334 4455599999999999999999999999999999999999999754 221 24789
Q ss_pred cceeccCccccccceeEEeeeecCCCCCCCceEEEEEEEeecCCCCCCccee-----EEEEEEeecChhhhhhhcCC-CC
Q 005872 457 GTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRTTRVNDRRSSRKSY-----WTVDSKTAKTESDARIKLGS-EP 530 (672)
Q Consensus 457 Gt~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~~~~~p~~~~-----~~~~~~~~~te~~a~~~~~~-~~ 530 (672)
||+|+++++|++|||+|+|||||||||++|||+++|+++++.+ ||++++ |++++++++||++|+++++. ++
T Consensus 491 Gt~V~~~v~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~---np~~~~~~~~~~~~~~t~~~tE~~a~~~~~~~~~ 567 (746)
T 1tu5_A 491 GNQVGEHTLGPVHTHSAHYKVDLDVGGLENWVWAEDMAFVPTA---IPWSPEHQIQRLQVTRKQLETEEQAAFPLGGASP 567 (746)
T ss_dssp EEEEETTEEEECEEEEEEEEEEECTTSSEEEEEEEEEEEEEEE---ETTEEEEEEEEEEEEEEECCBGGGGEEETTSCCC
T ss_pred cceecCCccccccceEEEEEecccccCCCCEEEEEeeEEcccC---CCCCcccccceeEEEEEEeeehhhhccccCCCCc
Confidence 9999999999999999999999999999999999999998874 788887 89999999999999999999 89
Q ss_pred cEEEEecCCCCCCCCCceeEEEeeCCccccCCCCCChhhhccccccceEEEeeeCCCCCCCCCcCccCCCCCC--Chhhh
Q 005872 531 AELLFVNPNKKTKMGNLIGYRLIPEGVTGALLSSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDD--TLAVW 608 (672)
Q Consensus 531 r~~~i~N~~~~n~~G~p~gY~l~p~~~~~~~~~~~s~~~~ra~fa~~~lwVT~y~~~E~~asg~y~~q~~~~~--~l~~~ 608 (672)
|+| |+|++++|++|+|+||||+|+++++++++++|...+||+||+|+||||||+|+|+||+|.|++|+.+++ +|+.|
T Consensus 568 r~~-ivn~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~aag~ynq~~~~~~~~~~~~~ 646 (746)
T 1tu5_A 568 RYL-YLASKQSNKWGHPRGYRIQTVSFAGGPMPQNSPMERAFSWGRYQLAITQRKETEPSSSSVFNQNDPWTPTVDFSDF 646 (746)
T ss_dssp SEE-EEEEEEECTTSCEEEEEEEEECBCCCCCCTTSTTGGGGGGGGEEEEEEECCTTCCCSSCTTTTTCTTSCSCCGGGG
T ss_pred eEE-EeCCCCcCCCCCcceEEECcCCcccccCCCcchhhccccccccceEEeccCCCcccCCccccccCCCCCCccHhhh
Confidence 999 999999999999999999999999999999999999999999999999999999999999977776665 47899
Q ss_pred ccCCCceecCCeEEEEEeCcccCCCCCCCCcc--ccceeeeEEEeCCCCCCCCCCCCCCC
Q 005872 609 SNRNRSIENKDIVLWYTLGFHHVPYQEDFPVM--PTLNGGFELRPSNFFESNPVLKVKQP 666 (672)
Q Consensus 609 ~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvm--p~~~~~f~L~P~nFFd~nP~ldvp~~ 666 (672)
+ +||+|+|+|||||||||+||+||+|||||| |++++||+|||+|||++||+||+|++
T Consensus 647 ~-~~e~I~n~DiV~W~t~G~~HiPr~ED~PvM~tp~~~~gf~LrP~nFF~~nP~ld~p~~ 705 (746)
T 1tu5_A 647 I-NNETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDQEPSMDSADS 705 (746)
T ss_dssp C-SCCBCSSEEEEEEEEEEEEECCCGGGSSCBCCCSCCEEEEEEEESSSSSSCCCC----
T ss_pred c-CCCCccCCceEEEEecccccCCChhccCccCCCccEEEEEEEeCCCCCCCCcccCCCc
Confidence 9 999999999999999999999999999999 77999999999999999999999998
No 7
>1w7c_A Lysyl oxidase; AMNE oxidase, copper, oxidoreductase, quinoprotein, topaquinone enzyme, TPQ; HET: BMA NAG TPQ IMD; 1.23A {Pichia pastoris} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1rky_A* 1n9e_A*
Probab=100.00 E-value=2.6e-160 Score=1370.78 Aligned_cols=606 Identities=20% Similarity=0.319 Sum_probs=528.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCCC--Cce---EEEEEEccCCCHHHHHhhhhcCCCCCCCCEEEEEEEeC---
Q 005872 24 SHQYHPLDSLTPSEFSQIRSIVTKAYPESST--HKL---TFQYVGLEEPSKQTVISWLKNETTTNPPRQAFVIARID--- 95 (672)
Q Consensus 24 ~~~~HPldpLt~~Ei~~a~~~v~~~~~~~~~--~~~---~f~~I~L~eP~K~~vl~~l~~~~~~~p~R~A~vvi~~~--- 95 (672)
...+|||||||++||++|+++|+++..+++. ..+ +|++|+|+||+|++||+||++++ ++|+|+|+|+++++
T Consensus 15 ~~~~~p~~~Ls~~E~~aV~~~L~~~l~l~~~~~~~~~dN~i~~VeL~~P~K~~vL~~Ld~~g-~~P~R~A~vv~~~~~~~ 93 (747)
T 1w7c_A 15 APKTNIWTSLAKEEVQEVLDLLHSTYNITEVTKADFFSNYVLWIETLKPNKTEALTYLDEDG-DLPPRNARTVVYFGEGE 93 (747)
T ss_dssp CSSCCTTCCCCHHHHHHHHHHHHHHSCCCCGGGCCTTSEEEEEEEEECCCHHHHHHHHHSCC-CCCCCEEEEEEEECSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhccCCCccccCccccceEEEEECcCCCHHHHHhHhhCCC-CCCCceEEEEEEeCCCC
Confidence 3557999999999999999999988323211 123 89999999999999999999884 67899999999885
Q ss_pred -CeeEEEEEe-CCCCeEEEEEeeC---CC---CCC----CCCHHHHHHHHHHhhcCchHHHHH------HHhC-CCCcce
Q 005872 96 -HQTHELIVD-LSLQEIASKRIYS---GY---GYP----MFTFEDQENADKLAFTYPPFVASI------RRRG-LKLEEV 156 (672)
Q Consensus 96 -~~~~E~vV~-l~~~~v~~~~~~~---~~---~~p----~~~~ee~~~~e~~~~~~p~~~~a~------~~~g-~~~~~v 156 (672)
+.++|++|+ |+.+++++++.++ +. .+| +++.+|+.+++++|+ .+++++ +++| ++..+
T Consensus 94 ~~~~~E~vV~PL~~~~v~~~~~~~~~~~~g~~~~p~~~r~~~~~E~~~~e~~~~---~~~~~~~~~~l~~~~g~~~~~~- 169 (747)
T 1w7c_A 94 EGYFEELKVGPLPVSDETTIEPLSFYNTNGKSKLPFEVGHLDRIKSAAKSSFLN---KNLNTTIMRDVLEGLIGVPYED- 169 (747)
T ss_dssp SCEEEEEEEESSSCCTTCEEEECCTTCTTCCSEEEGGGCCCCHHHHHHHHHHHH---HHHTSHHHHHHHHHHHSSCGGG-
T ss_pred CCceEEEEEcCCCCCcEEEEEeccccCCCCcccCCcccCCCCHHHHHHHHHHHH---HHHHHHhhccchhhcCCcccce-
Confidence 467899999 9999988877773 33 358 899999999999999 666666 6788 75444
Q ss_pred EEccccccccCCccccCCCCceEEEEEEEEecCCCCCccCCcCCcEEEEecC-----ccEEEEEeCCce-----------
Q 005872 157 VCESFSVGWYGAEEEEGKNKKRIVKVMCYYMNGTVNLFMRPIEGISMTVDLD-----EMKIIGFQDRVT----------- 220 (672)
Q Consensus 157 ~~d~~~~G~~~~~~~~~~~~~R~~~~~~f~~~~~~n~ya~Pl~gl~~~vD~~-----~~kv~~i~d~~~----------- 220 (672)
|++|+++ .+.+....++|++|++||.+...+|+|+||| ||+++||++ +|||++|++.+.
T Consensus 170 -l~~w~~~---~~~~~~~~g~R~~~~~~~r~~~~~n~Y~~Pl-g~~~~vD~~~~D~~~~~V~~v~~~g~~~~s~~el~~~ 244 (747)
T 1w7c_A 170 -MGCHSAA---PQLHDPATGATVDYGTCNINTENDAENLVPT-GFFFKFDMTGRDVSQWKMLEYIYNNKVYTSAEELYEA 244 (747)
T ss_dssp -EEEEECS---SCEECTTTCCEEEEEEEEECCSSSCGGGCEE-EEEEEEECCSSCGGGCEEEEEEETTEEESSHHHHHHH
T ss_pred -eeeeccc---CCcCCCCCCceEEEEEEEEecCCCCccccce-eeEEEEeCCCCCcccCEEEEEEECCcccCchhhhhhh
Confidence 8888755 2211001268999999975533389999999 799999996 799999976531
Q ss_pred ------e---ecCCCCCCCC---ccccCC-C--CCCCCCCCceeeCCCCCeEEEeceE--EeeeceEEEEeeeCCCceeE
Q 005872 221 ------V---PVPKADETEF---RESKIK-P--PFRQSLKAITVVQPDGPSFTIDGHM--IRWADWEFHLSFDVRAGMII 283 (672)
Q Consensus 221 ------~---~~p~~~~~~y---~~~~~~-~--~~r~~lkp~~i~QPeG~sf~v~g~~--V~w~~W~f~~~f~~reGlvL 283 (672)
+ +.| ..+| .+.... + +.|+++|||+|+||||+||+|+|++ |+||||+||||||+||||||
T Consensus 245 ~~~~g~v~~~~~p---~~~~~~~~~~~~~~g~~~~r~~lkp~~i~QPeG~sF~v~g~~~yV~W~~W~f~vgf~~reGlvL 321 (747)
T 1w7c_A 245 MQKDDFVTLPKID---VDNLDWTVIQRNDSAPVRHLDDRKSPRLVEPEGRRWAYDGDEEYFSWMDWGFYTSWSRDTGISF 321 (747)
T ss_dssp HHSTTCCCCCCCC---TTCCGGGCCSCCTTSCCCTTTTSCCCCCCCTTCCCCEEETTTTEEEETTEEEEEEEETTTEEEE
T ss_pred hcccCcccccccC---CCCCcccchhhcccCCCCcccCCCCCcccCCCCCCEEEeCCccceeccCCeEEEecCCCCceEE
Confidence 1 222 1232 222322 1 3589999999999999999999999 99999999999999999999
Q ss_pred EeeEEeccCCCceeEEEEeeeeeeEEeecCCCCccccccceeecCCCCCCcCccCCCCCCCCCCCcEEeeeEEecCCCCe
Q 005872 284 SLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFFDAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMP 363 (672)
Q Consensus 284 ~~v~~~D~r~~~~r~v~yrlsl~Em~VpY~dp~~~~~~k~~fD~ge~G~G~~a~~L~~G~DCpg~a~YlD~~~~~~~g~p 363 (672)
|||+|. +||||||+|||||+||||||++.|++|+|||+| ||+|. |++|++||||||+|+|||++++ ++|+|
T Consensus 322 ~dv~y~------gr~V~YrlSl~Em~VPYgdp~p~~~~~~~~D~g-yG~G~-a~~L~~GcDCpg~i~Y~D~~~~-~~G~p 392 (747)
T 1w7c_A 322 YDITFK------GERIVYELSLQELIAEYGSDDPFNQHTFYSDIS-YGVGN-RFSLVPGYDCPSTAGYFTTDTF-EYDEF 392 (747)
T ss_dssp EEEEET------TEEEEEEEEEEEEEEEECCSSTTGGGCEEEHHH-HCSSS-SCCCCBTTTBCTTCEEEEEEEE-ETTEE
T ss_pred EeeeEC------CEEEEEEEEeeeEEeccCCCCchhheeeeeccc-cCccc-ccccccCCCCCCCCEEeeeEEe-cCCCe
Confidence 999983 499999999999999999999999999999999 99999 9999999999999999999999 99999
Q ss_pred eeeCceEEEEEecCCCceeeecccCCCCeeEeeeeeceEEEEEEeEeecccceEEEEEEeeCccEEEEEeEeeeeeeeee
Q 005872 364 RKIPKAFCIFERYAGDIMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEFKQSGSIKVTVGLTGMVQVRGT 443 (672)
Q Consensus 364 ~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~~r~~~~LVvr~i~TVgNYdYi~~w~F~~dG~Ie~~v~aTGil~~~~~ 443 (672)
++++|||||||+|.|.|||||+++ +.++ ++++++||||+|+|||||||||+|+|||||+||++|+|||||++...
T Consensus 393 ~~~~naiCihE~d~G~pl~kH~~~--~~~~---v~r~r~LVvr~i~TVgNYdYif~w~F~qdG~Ie~ev~aTGil~t~~~ 467 (747)
T 1w7c_A 393 YNRTLSYCVFENQEDYSLLRHTGA--SYSA---ITQNPTLNVRFISTIGNADYNFLYKFFLDGTLEVSVRAAGYIQAGYW 467 (747)
T ss_dssp EEEEEEEEEEEEECSSCSEEEEET--TEEE---EECCEEEEEEEEECCCC-CEEEEEEECTTSCEEEEEEECBCCCCEEC
T ss_pred EEcCceEEEEEEeCCeeeEEeccC--Ccce---eeeCceEEEEEEEeccccceEEEEEEecCCeEEEEEEeeEEEecccc
Confidence 999999999999965569999999 3334 55555999999999999999999999999999999999999997543
Q ss_pred eeccCCCCccccccceeccCccccccceeEEeeeecCCCCCCCceEEEEEEEeecCCCCCCcce-----eEEEEEEeecC
Q 005872 444 TYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRTTRVNDRRSSRKS-----YWTVDSKTAKT 518 (672)
Q Consensus 444 ~~~~~~~~~~~~yGt~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~~~~~p~~~-----~~~~~~~~~~t 518 (672)
.. .++.+|||+|+++++|++|||+|+|||||||||++|||+++|+++++.+ ||+++ +|++++++++|
T Consensus 468 --~~---~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~---np~~~~~~~~~~~~~~t~~~t 539 (747)
T 1w7c_A 468 --NP---ETSAPYGLKIHDVLSGSFHDHVLNYKVDLDVGGTKNRASQYVMKDVDVE---YPWAPGTVYNTKQIAREVFEN 539 (747)
T ss_dssp --CT---TTCGGGCCEEETTEECCCEEEEEEEEEEECTTSSEEEEEEEEEEEEEEE---CTTSTTCEEEEEEEEEEECCB
T ss_pred --CC---CCcCCCcceecCCcccCccceEEEEEeccccCCCCCEEEEEeeEEcccC---CCCCcccccceeEEEEEEccc
Confidence 21 2247899999999999999999999999999999999999999998875 66666 89999999999
Q ss_pred hhhhhhhcC-C-CCcEEEEecCCCCCCCCCceeEEEeeCCc-cccCCCCCChhhhccccccceEEEeeeCCCCCCCCCcC
Q 005872 519 ESDARIKLG-S-EPAELLFVNPNKKTKMGNLIGYRLIPEGV-TGALLSSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLY 595 (672)
Q Consensus 519 e~~a~~~~~-~-~~r~~~i~N~~~~n~~G~p~gY~l~p~~~-~~~~~~~~s~~~~ra~fa~~~lwVT~y~~~E~~asg~y 595 (672)
|++|+++++ . ++|+| |+|++++|++|+|+||||+|+++ ++++++++|...+||+||+|+||||||+|+|+||+|.|
T Consensus 540 E~~a~~~~~~~~~~r~~-ivN~~~~N~~G~p~gYkl~p~~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~aag~y 618 (747)
T 1w7c_A 540 EDFNGINWPENGQGILL-IESAEETNSFGNPRAYNIMPGGGGVHRIVKNSRSGPETQNWARSNLFLTKHKDTELRSSTAL 618 (747)
T ss_dssp CCTTCBCCCGGGCEEEE-EEEEEEECTTSCEEEEEEEECTTCCCCSCSSCTTCSSSCGGGGSSEEEEECCTTCCCSCCTT
T ss_pred hhhhhhcCCCCCCceEE-EeCCCccCCCCCcceEEEecCCCCcccccCCCchhhhcchhccCcEEEecCCCCccCCCCCc
Confidence 999999999 5 79999 99999999999999999999999 99999999999999999999999999999999999999
Q ss_pred ccCCCCCC--ChhhhccCCCceecCCeEEEEEeCcccCCCCCCCCcc--ccceeeeEEEeCCCCCCCCCCCCCCC
Q 005872 596 ADQSHGDD--TLAVWSNRNRSIENKDIVLWYTLGFHHVPYQEDFPVM--PTLNGGFELRPSNFFESNPVLKVKQP 666 (672)
Q Consensus 596 ~~q~~~~~--~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvm--p~~~~~f~L~P~nFFd~nP~ldvp~~ 666 (672)
++|+.+++ +|+.|+ +||+|+|+|||||||||+||+||+|||||| |++++||+|||+|||++||+||+|++
T Consensus 619 nq~~~~~~~~~~~~~~-~~e~I~n~DiVlW~t~G~~HiPr~ED~PvM~tP~~~~gf~LrP~nFF~~nP~ldvp~~ 692 (747)
T 1w7c_A 619 NTNALYDPPVNFNAFL-DDESLDGEDIVAWVNLGLHHLPNSNDLPNTIFSTAHASFMLTPFNYFDSENSRDTTQQ 692 (747)
T ss_dssp CTTCSSSCSCCGGGGC-SCCBCTTEEEEEEEEEEEEECCCGGGSSCBCSSSSEEEEEEEEESSSSSCTTTTCSSE
T ss_pred cccCCCCCCcchhhhh-CCCccccCceEEEEecccccCCChhhcCCcCCCcceEEEEEEeCCcCCCCCCccCCCc
Confidence 76666665 488999 999999999999999999999999999999 77999999999999999999999987
No 8
>3hi7_A Amiloride-sensitive amine oxidase; oxidoreductase, copper amine oxidase, topaquinone, TPQ, DIAM oxidase, DAO, human, glycoprotein, heparin-binding; HET: TPQ NAG BMA; 1.80A {Homo sapiens} PDB: 3hig_A* 3hii_A* 3k5t_A* 3mph_A*
Probab=100.00 E-value=1.8e-152 Score=1301.81 Aligned_cols=614 Identities=25% Similarity=0.367 Sum_probs=512.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCC--C------CCCCceEEEEEEccCCCHHHHHhhhhcCCCCCCCCEEEEEEEeCCe-
Q 005872 27 YHPLDSLTPSEFSQIRSIVTKAYP--E------SSTHKLTFQYVGLEEPSKQTVISWLKNETTTNPPRQAFVIARIDHQ- 97 (672)
Q Consensus 27 ~HPldpLt~~Ei~~a~~~v~~~~~--~------~~~~~~~f~~I~L~eP~K~~vl~~l~~~~~~~p~R~A~vvi~~~~~- 97 (672)
+-+|++||++|+++++++|.++.. + +..+| ++..|||+.|+|++||+|||+++ ++|+|+|+|+|++|++
T Consensus 10 ~~vf~dLs~~E~~~V~~~L~~~~~l~Lt~~~~a~~~dN-~i~~iEl~~P~K~~vL~~LD~~~-~~P~R~A~vvi~fG~~~ 87 (731)
T 3hi7_A 10 AGVFSDLSNQELKAVHSFLWSKKELRLQPSSTTTMAKN-TVFLIEMLLPKKYHVLRFLDKGE-RHPVREARAVIFFGDQE 87 (731)
T ss_dssp GGGGCCCCHHHHHHHHHHHHTCGGGCBCCTTSSCSSSE-EEEEEEEECCCHHHHHHHHHHCC-CCCCCEEEEEEEECSSS
T ss_pred CCccccCCHHHHHHHHHHHhcCCCCCCcccccCCccCC-eEEEEEecCCCchhhhhhhcCCC-CCCCcceEEEEEcCCCC
Confidence 356999999999999999997631 1 34456 89999999999999999999984 7899999999999763
Q ss_pred ---eEEEEEe-CCCCeEEEEEeeCCCCC------CCCCHHHHHHHHHHhhc-CchHHHHH-HHhCC--CCcceEEccccc
Q 005872 98 ---THELIVD-LSLQEIASKRIYSGYGY------PMFTFEDQENADKLAFT-YPPFVASI-RRRGL--KLEEVVCESFSV 163 (672)
Q Consensus 98 ---~~E~vV~-l~~~~v~~~~~~~~~~~------p~~~~ee~~~~e~~~~~-~p~~~~a~-~~~g~--~~~~v~~d~~~~ 163 (672)
+.|++|+ |+.++.++... ++.+. .+++.-|+.++.+++.+ -..+...+ ...|. +.+.-.|+.+..
T Consensus 88 ~P~v~Ey~VGPLP~p~~~~~l~-~~~~~~~p~~~R~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~cL~~~~ 166 (731)
T 3hi7_A 88 HPNVTEFAVGPLPGPCYMRALS-PRPGYQSSWASRPISTAEYALLYHTLQEATKPLHQFFLNTTGFSFQDCHDRCLAFTD 166 (731)
T ss_dssp SCEEEEEEEECSSSCCEEEEES-CCTTCCCHHHHSCCCHHHHHHHHHHHHHHTGGGHHHHHHHHSCBSSSCSSSBEEEEE
T ss_pred CCeeEEEEEcCCCCCCeeeecc-cCCCCcCCcccCCCcHHHHHHHHHHHHHHHhHHHHHHHHHhCceecCCCCCEEeeec
Confidence 6799996 88777655444 33322 34656567777666543 12222222 23454 333334655432
Q ss_pred cccCCcc-ccCCCCceEEEEEEEEecCCCCCccCCcCCcEEEEec-----CccEEEEEeCCce-----------------
Q 005872 164 GWYGAEE-EEGKNKKRIVKVMCYYMNGTVNLFMRPIEGISMTVDL-----DEMKIIGFQDRVT----------------- 220 (672)
Q Consensus 164 G~~~~~~-~~~~~~~R~~~~~~f~~~~~~n~ya~Pl~gl~~~vD~-----~~~kv~~i~d~~~----------------- 220 (672)
. .|. .+ .|+|.. |+.|+|.. ...|.||+ ||.++||+ +.|+|.+|.+.+.
T Consensus 167 ~---~P~~~~--sg~r~~-W~~~~~~~-~g~~l~P~-gl~~~vDh~~~Dps~W~v~~v~Yng~~y~s~eel~~~y~~g~~ 238 (731)
T 3hi7_A 167 V---APRGVA--SGQRRS-WLIIQRYV-EGYFLHPT-GLELLVDHGSTDAGHWAVEQVWYNGKFYGSPEELARKYADGEV 238 (731)
T ss_dssp C---SSCSSS--TTCCEE-EEEEEECS-TTGGGCEE-EEEEEEECCSSSGGGCEEEEEEETTEECSSHHHHHHHHHTTCC
T ss_pred C---CCCccC--CCCEEE-ehheeccC-CCceeecc-ceEEEEecCCCChHHcEEEEEEECCEecCCHHHHHHHHhCCCe
Confidence 2 222 22 144554 44566643 24799999 89999999 5899999975432
Q ss_pred --e--ecCCCCC---------CCCccccCCC--CCCCCCCCceeeCCCCCeEEEeceEEeeeceEEEEeeeCCCceeEEe
Q 005872 221 --V--PVPKADE---------TEFRESKIKP--PFRQSLKAITVVQPDGPSFTIDGHMIRWADWEFHLSFDVRAGMIISL 285 (672)
Q Consensus 221 --~--~~p~~~~---------~~y~~~~~~~--~~r~~lkp~~i~QPeG~sf~v~g~~V~w~~W~f~~~f~~reGlvL~~ 285 (672)
+ +.|..++ ..|..-..++ +.++++|||+|+||||+||+|+|++|+||||+||||||+||||||||
T Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~~s~~~~~~~~~~~~~~kp~~i~QPeG~sF~V~g~~V~W~~W~F~vgfn~reGlvL~d 318 (731)
T 3hi7_A 239 DVVVLEDPLPGGKGHDSTEEPPLFSSHKPRGDFPSPIHVSGPRLVQPHGPRFRLEGNAVLYGGWSFAFRLRSSSGLQVLN 318 (731)
T ss_dssp CCCCCCCCC----------CCCCTTSCCCCSCCSBCCCSCCCEEECTTCCSSEEETTEEEEBTEEEEEEEETTTEEEEEE
T ss_pred eEeccCCCCCcccccccccccccccccccCCCCCCCCCCCCcceeCCCCCCEEEeCCEEEecCcEEEEecCCCCCcEEEe
Confidence 1 1111111 0122112222 34789999999999999999999999999999999999999999999
Q ss_pred eEEeccCCCceeEEEEeeeeeeEEeecCCCCccccccceeecCCCCCCcCccCCCCCCCCCCCcEEeeeEEecCCCCeee
Q 005872 286 ASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFFDAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRK 365 (672)
Q Consensus 286 v~~~D~r~~~~r~v~yrlsl~Em~VpY~dp~~~~~~k~~fD~ge~G~G~~a~~L~~G~DCpg~a~YlD~~~~~~~g~p~~ 365 (672)
|+|+| |||+||+|||||+||||||+++|++|+|||+| ||+|.+||+|++||||||+|+|||+++.+++|+|++
T Consensus 319 V~y~g------r~v~YrlSlsEm~VpYgdp~p~~~~k~~fD~G-yG~G~~an~L~lGcDCpg~i~YlD~~~~~~~G~p~~ 391 (731)
T 3hi7_A 319 VHFGG------ERIAYEVSVQEAVALYGGHTPAGMQTKYLDVG-WGLGSVTHELAPGIDCPETATFLDTFHYYDADDPVH 391 (731)
T ss_dssp EEETT------EEEEEEEEEEEEEEEECCSSHHHHHCEEEGGG-GTGGGCCCCCCBTTTBCTTSEEEEEEEEESCSSCEE
T ss_pred EEECC------eeEEEEeeeeeeEEccCCCCCccccceeeecC-cCccccccccccCCCCCCCCEEEeeEEecCCCCEEe
Confidence 99854 89999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred eCceEEEEEecCCCceeeecc--cCCCCeeEeeeeeceEEEEEEeEeecccceEEEEEEeeCccEEEEEeEeeeeeeeee
Q 005872 366 IPKAFCIFERYAGDIMWRHTE--ATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEFKQSGSIKVTVGLTGMVQVRGT 443 (672)
Q Consensus 366 ~~naiCi~E~d~~g~l~kH~~--~~~~~~~~~~~r~~~~LVvr~i~TVgNYdYi~~w~F~~dG~Ie~~v~aTGil~~~~~ 443 (672)
++|||||||+|.|.++|||++ ++++ ..++.++++++||||+|+|||||||||+|+|||||+||+||||||||++...
T Consensus 392 ~~naICihE~d~Gi~~~kHtd~~~r~~-~~~~~~~r~r~LVvr~I~TVgNYDYif~w~F~qdGsIe~eVraTGilst~~~ 470 (731)
T 3hi7_A 392 YPRALCLFEMPTGVPLRRHFNSNFKGG-FNFYAGLKGQVLVLRTTSTVYNADYIWDFIFYPNGVMEAKMHATGYVHATFY 470 (731)
T ss_dssp EEEEEEEEEEECSSCSEEEEEECSSSS-EEEEEEECCEEEEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEECCCEEEC
T ss_pred cCCEEEEEEeeCCeeEEEecccccCCc-cceeecccccEEEEEEeeecccccEEEEEEEecCCeEEEEEEEEEEEeeccc
Confidence 999999999996667899975 4443 2345567778999999999999999999999999999999999999997543
Q ss_pred eeccCCCCccccccceeccCccccccceeEEeeeecCCCCCCCceEEEEEEEeecCCCCCCcc--eeEEEEEEeecChhh
Q 005872 444 TYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRTTRVNDRRSSRK--SYWTVDSKTAKTESD 521 (672)
Q Consensus 444 ~~~~~~~~~~~~yGt~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~~~~~p~~--~~~~~~~~~~~te~~ 521 (672)
.. ++.+|||+|+|+++|++|||+|||||||||||.+|||+++|+++++.+.|++|.. +++++++++++||++
T Consensus 471 --~~----~~~~yGt~V~p~v~a~~HqH~f~~RlD~dIDG~~Nsv~~~d~~~~~~~nP~~~~~~~~~~~~~~t~l~tE~e 544 (731)
T 3hi7_A 471 --TP----EGLRHGTRLHTHLIGNIHTHLVHYRVDLDVAGTKNSFQTLQMKLENITNPWSPRHRVVQPTLEQTQYSWERQ 544 (731)
T ss_dssp --CG----GGGGSEEEEETTEEEECEEEEEEEEEEECTTSSEEEEEEEEEEEEEEECTTCTTSEEEEEEEEEEEECBGGG
T ss_pred --CC----CCCCCcceecCCcccccceeEEEEEeccccCCCCCEEEEEeceecCCCCCCCCCccceeEEEEEEEccchhh
Confidence 21 2368999999999999999999999999999999999999999998877888875 568999999999999
Q ss_pred hhhhcCC-CCcEEEEecCCCCCCCCCceeEEEeeCCccccCCCCCChhhhccccccceEEEeeeCCCCCCCCCcCccCCC
Q 005872 522 ARIKLGS-EPAELLFVNPNKKTKMGNLIGYRLIPEGVTGALLSSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSH 600 (672)
Q Consensus 522 a~~~~~~-~~r~~~i~N~~~~n~~G~p~gY~l~p~~~~~~~~~~~s~~~~ra~fa~~~lwVT~y~~~E~~asg~y~~q~~ 600 (672)
|++++++ ++|+|+|+|+ ++|++|+|+||||+|++++.+++.++|...+||+||+|+||||||+|+|+||+|+|++|++
T Consensus 545 a~~~~~~~~~R~~~i~N~-~~N~~G~pvgYkl~p~~~~~~~l~~~s~~~rra~fa~~~lwVT~y~d~E~~aag~y~~~s~ 623 (731)
T 3hi7_A 545 AAFRFKRKLPKYLLFTSP-QENPWGHKRSYRLQIHSMADQVLPPGWQEEQAITWARYPLAVTKYRESELCSSSIYHQNDP 623 (731)
T ss_dssp GCBCTTSCCCSEEEEEEE-EECTTSCEEEEEEEEECCCCCCSCTTSGGGGGGGGGGCSEEEEECCGGGSCSCCTTTTTCS
T ss_pred hhhccCCCCceEEEEeCC-CcCCCCCceeEEEccCCccccccCCcchhhhhchhcccceEEecCCCCccCCCccccccCC
Confidence 9999999 9999999999 8899999999999999887777779999999999999999999999999999999999987
Q ss_pred CCC--ChhhhccCCCceecCCeEEEEEeCcccCCCCCCCCcc--ccceeeeEEEeCCCCCCCCCCCCCCC
Q 005872 601 GDD--TLAVWSNRNRSIENKDIVLWYTLGFHHVPYQEDFPVM--PTLNGGFELRPSNFFESNPVLKVKQP 666 (672)
Q Consensus 601 ~~~--~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvm--p~~~~~f~L~P~nFFd~nP~ldvp~~ 666 (672)
+++ +|+.|+++||+|+|||||+|+|||+||+||+|||||| |++++||+|||+|||++||+||+|++
T Consensus 624 ~~~~~gl~~w~~~~e~I~n~DiV~W~t~G~~HiPr~ED~PvMptp~e~~~f~LrP~nFFd~nPalds~~~ 693 (731)
T 3hi7_A 624 WDPPVVFEQFLHNNENIENEDLVAWVTVGFLHIPHSEDIPNTATPGNSVGFLLRPFNFFPEDPSLASRDT 693 (731)
T ss_dssp SSCSCCTTHHHHTCCBCSSEEEEEEEEEEEEECCCGGGSSCBCSTTCEEEEEEEEESSSSSCGGGGCTTC
T ss_pred CCCCCCHHHHhhCCCceecCceEEEEecccccCCChhhcCccccccceeEEEEEccCCCCCCccccCcce
Confidence 764 7999999999999999999999999999999999999 55899999999999999999999986
No 9
>3pgb_A Putative uncharacterized protein; oxidoreductase, copper amine oxidase, CAO, topaquinone, TPQ; HET: TPQ NAG BMA MAN; 2.45A {Emericella nidulans}
Probab=100.00 E-value=1.6e-150 Score=1286.79 Aligned_cols=612 Identities=21% Similarity=0.348 Sum_probs=499.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCC--------CCCCceEEEEEEccCCCHHHHHhhhhcCCCCCCCCEEEEEEEeC
Q 005872 24 SHQYHPLDSLTPSEFSQIRSIVTKAYPE--------SSTHKLTFQYVGLEEPSKQTVISWLKNETTTNPPRQAFVIARID 95 (672)
Q Consensus 24 ~~~~HPldpLt~~Ei~~a~~~v~~~~~~--------~~~~~~~f~~I~L~eP~K~~vl~~l~~~~~~~p~R~A~vvi~~~ 95 (672)
++...+|++||++|+++++++|.++..+ +..+| ++..|||+.|+|++||+|||+++ ++|+|+|+|+|++|
T Consensus 62 ap~~~vfadLs~~E~~aV~~~L~~~~~l~Lt~~~~a~~~dN-~i~~iEl~~P~K~~vL~~LD~~~-~~P~R~A~vvi~fG 139 (797)
T 3pgb_A 62 APKENVWYGLTDDETADVAKWLFGRPELNLTTTENAGEWDN-TIALIELHRPNKSEAIPYLDGSG-PAPTRHAHVRLNNR 139 (797)
T ss_dssp CSSCCSSSCCCHHHHHHHHHHHHTCTTTCCCCTTTCCSSSE-EEEEEEEECCCHHHHHHHHHC----CCCCEEEEEEEEC
T ss_pred CCCCCcccccCHHHHHHHHHHHhcCCCCCCcccccCCccCC-eEEEEEeeCCCHHHHHHhhcCCC-CCCCeeEEEEEEcC
Confidence 3457999999999999999999987421 34456 89999999999999999999984 78999999999996
Q ss_pred C----eeEEEEEe-CCCC--eEEEEEeeC--CC--C-----CCCCCHHHHHHHHHHhhcCchHHHHHH-HhCCCCcceEE
Q 005872 96 H----QTHELIVD-LSLQ--EIASKRIYS--GY--G-----YPMFTFEDQENADKLAFTYPPFVASIR-RRGLKLEEVVC 158 (672)
Q Consensus 96 ~----~~~E~vV~-l~~~--~v~~~~~~~--~~--~-----~p~~~~ee~~~~e~~~~~~p~~~~a~~-~~g~~~~~v~~ 158 (672)
+ .+.|++|+ |+.+ +.++....+ +. + ..+++..|+..+..+++.--.....+- ..+.+..+ .|
T Consensus 140 ~~~~P~v~Ey~VGPLP~p~~t~~~~l~~~y~~~~~g~~~~~~r~~~~~e~~~l~~~~~~~~~~~~~l~~~t~~~~~~-~~ 218 (797)
T 3pgb_A 140 ATTDPYFADILVGPLPVSNATTWEPLEFPYTRKTQGQVRNVEPDGETVYSEWLFKISASIADITLDLWNGTALGLEN-DT 218 (797)
T ss_dssp SSSSCEEEEEEEESSSCSTTCEEEECCTTCSSCSTTEEECSCCCTTHHHHTTHHHHHHHTHHHHHHHHSCCCSSSTT-CC
T ss_pred CCCCCceEEEEEcCCCCCCcceeEEccccccCCCCCCCCcccCcchhhHHHHHHHHHHHHHHHHHHHhhcccccCCC-Ce
Confidence 5 46799996 7766 566554431 11 1 123455567666666554333333221 11111111 12
Q ss_pred ccccccccCCc-cccCCCCceEEEEEEEEec-C--CCCCccCCcCCcEEEEecC-----ccEEEEEeCCce-ee------
Q 005872 159 ESFSVGWYGAE-EEEGKNKKRIVKVMCYYMN-G--TVNLFMRPIEGISMTVDLD-----EMKIIGFQDRVT-VP------ 222 (672)
Q Consensus 159 d~~~~G~~~~~-~~~~~~~~R~~~~~~f~~~-~--~~n~ya~Pl~gl~~~vD~~-----~~kv~~i~d~~~-~~------ 222 (672)
+.+. ..+| ..+ .|+|. .|++|+|. . .+++|.||+ ||+++||+. .|+|.+|.+.+. +.
T Consensus 219 L~~~---~~~P~g~~--sg~r~-~W~~~~~~~~g~~d~~~lhP~-gl~~lvDh~~~Dps~W~v~~v~Yng~~y~s~eel~ 291 (797)
T 3pgb_A 219 LDIW---GIDPLWQD--DGRII-RWDMFWNMADDEFDSETLLPL-GLYLKSDVTGRDPSQWKLLGWMYNDIFYETTEEFR 291 (797)
T ss_dssp EEEE---ECSSCBCS--TTCCE-EEEEEEECCCTTCCCGGGCEE-EEEEEEECCSSCGGGCEEEEEEETTEEESSHHHHH
T ss_pred Eeee---ccCCCCcC--CCCEE-EeeeeeccCCCccccceeecc-ceEEEEecCCCChhHcEEEEEEECCEecCCHHHHH
Confidence 2221 1122 222 14344 56777774 2 367999999 899999995 899999975443 11
Q ss_pred ----------cCCCCCCCCccccCCC--CCCCCCCCceeeCCCCCeEEEe--ceEEeeeceEEEEeeeCCCceeEEeeEE
Q 005872 223 ----------VPKADETEFRESKIKP--PFRQSLKAITVVQPDGPSFTID--GHMIRWADWEFHLSFDVRAGMIISLASI 288 (672)
Q Consensus 223 ----------~p~~~~~~y~~~~~~~--~~r~~lkp~~i~QPeG~sf~v~--g~~V~w~~W~f~~~f~~reGlvL~~v~~ 288 (672)
+.+.....|....+++ +.|+++|||+|+||||+||+|+ |++|+||||+||+|||+||||+||||+|
T Consensus 292 ~~y~~g~~~~~~~~~~g~ws~~~~~g~~~~~~~lkP~~i~QPeGpsF~V~g~g~~V~W~~W~F~vgfn~ReGlvL~dV~y 371 (797)
T 3pgb_A 292 KAYWSPGFVKLKPNVDGAWAHTEQRGPVPPQDRKQPPVMIAPDGARYSVDAERKYVTWMDFSFYIAFNRDTGLSLFDIKY 371 (797)
T ss_dssp HHHTSTTCCCCCCCCCCGGGCCSCCSCCCTTTTSCCCCCCCTTCCCSEEETTTTEEEETTEEEEEEEETTTEEEEEEEEE
T ss_pred HHHhCCCeeecCCCCCCcccccccCCCCCCcCCCCCceeeCCCCCCEEEecCCCEEEeCCcEEEEecCCCCceEEEcccc
Confidence 1111122443212222 3488999999999999999997 7999999999999999999999999998
Q ss_pred eccCCCceeEEEEeeeeeeEEeecCCCCccccccceeecCCCCCCcCccCCCCCCCCCCCcEEeeeEEecCCCCeeeeCc
Q 005872 289 YDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFFDAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPK 368 (672)
Q Consensus 289 ~D~r~~~~r~v~yrlsl~Em~VpY~dp~~~~~~k~~fD~ge~G~G~~a~~L~~G~DCpg~a~YlD~~~~~~~g~p~~~~n 368 (672)
+ +|||+||+|||||+|||||++|.+.+++|+| ||||+|.+||+|++||||||+|+|||+++.++ |+|++++|
T Consensus 372 ~------gr~V~YrlSlsEm~VPYg~~~P~~~~~af~D-~eyG~G~~an~L~lGcDCpg~i~YlD~~~~~~-~~p~~~~N 443 (797)
T 3pgb_A 372 K------GQRVLYELGLQEALAHYAANDPVQSSVAYLD-SYYGFGPYAFELLKGYDCPSYASYLNTSFYKD-EETHTHVD 443 (797)
T ss_dssp T------TEEEEEEEEEEEEEEEECCSSHHHHHCEEEG-GGTCSGGGCCCCCBTTTBCTTCEEEEEEEEET-TEEEEEEE
T ss_pred C------CeeEEEEeEeeeeEEeCCCCChhhhcceeee-cccCCccccccCccCCCCCCCCEEeeeEEecC-CCceEecc
Confidence 4 3899999999999999999987766666666 58999999999999999999999999999987 67899999
Q ss_pred eEEEEEecCCCceeeecccCCCCeeEeeeeeceEEEEEEeEeecccceEEEEEEeeCccEEEEEeEeeeeeeeeeeeccC
Q 005872 369 AFCIFERYAGDIMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEFKQSGSIKVTVGLTGMVQVRGTTYTHK 448 (672)
Q Consensus 369 aiCi~E~d~~g~l~kH~~~~~~~~~~~~~r~~~~LVvr~i~TVgNYdYi~~w~F~~dG~Ie~~v~aTGil~~~~~~~~~~ 448 (672)
||||||+|.|.|||||++. +.++ ++++++||||+|+|||||||||+|+|||||+||+||||||||++. .+.
T Consensus 444 aICihE~D~G~~lwKHt~~--~~~~---v~r~r~LVvr~I~TVgNYDYif~w~F~qdGsIe~eVraTGiLst~--~~~-- 514 (797)
T 3pgb_A 444 SLCLFEFDADYPMARHSTS--EFVS---VTKNVYFTLRSVSTIGNADYMFSYNFHMDGTIGVEVRASGYIQSA--YYA-- 514 (797)
T ss_dssp EEEEEEEECSSCSEEEECS--SEEE---EECCEEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEEEECCCCE--ECT--
T ss_pred EEEEEEeeCCceeEEeccC--Ccce---EEeccEEEEEEEeeeccccEEEEEEEecCCeEEEEEEEEEEEEec--ccC--
Confidence 9999999966689999996 3334 455559999999999999999999999999999999999999975 221
Q ss_pred CCCccccccceeccCccccccceeEEeeeecCCCCCCCceEEEEEEEeecCCCCCC--cceeEEEEEEeecChhhhhhhc
Q 005872 449 DHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRTTRVNDRRSS--RKSYWTVDSKTAKTESDARIKL 526 (672)
Q Consensus 449 ~~~~~~~yGt~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~~~~~p--~~~~~~~~~~~~~te~~a~~~~ 526 (672)
. +.+|||+|+|+++|++|||+|||||||||||.+|||+++|+++++.+.||+| ++++|++++++++||++|++++
T Consensus 515 ~---~~~yGt~V~p~v~a~~HqH~f~~RlD~dIDG~~Nsv~~~d~~~~~~~~p~~p~~~~n~~~~~~t~l~tE~eA~~~~ 591 (797)
T 3pgb_A 515 N---NQDFGYQIHDSLSGSMHDHVLNFKADFDILGPNNTIELVSVVPVTKQFSWSGNKTRNTMQLGRSFIHSEDEARLNW 591 (797)
T ss_dssp T---CGGGCCEEETTEECCCEEEEEEEEEEECTTSSEEEEEEEEEEEEEEECTTTTTCEEEEEEEEEEECCBGGGCEECC
T ss_pred C---CCCccceecCCccccccceEEEEeeccCCCCCCCeEEEEeeEEccCCCCCCCCcccceeEEEEEEccchhhhhhhc
Confidence 1 4789999999999999999999999999999999999999999988777665 5899999999999999999999
Q ss_pred CC-CCcEEEEecCCCCCCCCCceeEEEeeCCccccCCC-CCChhhhccccccceEEEeeeCCCCCCCCCcCccCCCCCCC
Q 005872 527 GS-EPAELLFVNPNKKTKMGNLIGYRLIPEGVTGALLS-SDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDDT 604 (672)
Q Consensus 527 ~~-~~r~~~i~N~~~~n~~G~p~gY~l~p~~~~~~~~~-~~s~~~~ra~fa~~~lwVT~y~~~E~~asg~y~~q~~~~~~ 604 (672)
++ ++|+|+|+|++++|++|+|+||||+|++++.+|+. +++..++||+||+|+||||||+|+|+||+|+|++|++++++
T Consensus 592 ~~~~~r~~~ivN~~~~N~~G~pvgYkL~p~~~~~~L~~~~s~~~~rra~fa~~~lwVT~y~d~E~~aaG~y~~qs~~~~~ 671 (797)
T 3pgb_A 592 GFNGQTQLHVVNQDKPNKFGEPRGYRILPSAGTAHLTVLNSSNLVHAAHWAEYDVQVTRQHDFEPTSAHPYNSQDIHNPP 671 (797)
T ss_dssp CGGGCEEEEEEEEEEECTTSCEEEEEEECSSCCCCCCCSSCTTTTTTTGGGGCSEEEEECCTTCCCSCCTTGGGCTTSCS
T ss_pred CCCCCceEEEeCCCCcCCCCCeeeEEEccCCCCccccCCCchhhhhhchhhhCceEEecCCCCccCCCCCCcccCCCCCc
Confidence 99 99999999999999999999999999987776664 45568889999999999999999999999999999988753
Q ss_pred --hhhhccCCCceecCCeEEEEEeCcccCCCCCCCCc--cccceeeeEEEeCCCCCCCCCCCCCCC
Q 005872 605 --LAVWSNRNRSIENKDIVLWYTLGFHHVPYQEDFPV--MPTLNGGFELRPSNFFESNPVLKVKQP 666 (672)
Q Consensus 605 --l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pv--mp~~~~~f~L~P~nFFd~nP~ldvp~~ 666 (672)
+..|+ +||+|+|||||+|||||+||+||+||||| ||++++||+|||+|||++||+||+|.+
T Consensus 672 v~~~~~~-~nesI~neDiVlW~t~G~~HiPr~ED~Pvt~MP~e~~gf~LrP~nFFd~NPald~~~~ 736 (797)
T 3pgb_A 672 VDFSTFF-NGESLNQTDLVVWLNLGMHHVPHTGDLPNTVFTTAHSGVAFTPLNYLPGDPSRETVNM 736 (797)
T ss_dssp CCGGGGC-SCCBCSSEEEEEEEEEEEEECCCGGGSSCBCTTTSEEEEEEEEESCSSSCGGGGCSCE
T ss_pred cchhhhc-CCCccccCceEEEEecccccCCChhhCCCccCCcceeEEEEEcCCCCCCCccccCccc
Confidence 56777 99999999999999999999999999999 999999999999999999999999975
No 10
>2cs7_A Pneumococcal histidine triad A protein; PHTA, pneumococcal histidine triad protein, structural genomics, unknown function; 1.20A {Streptococcus pneumoniae} SCOP: d.9.2.1
Probab=18.06 E-value=43 Score=26.22 Aligned_cols=18 Identities=22% Similarity=0.508 Sum_probs=16.3
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 005872 29 PLDSLTPSEFSQIRSIVT 46 (672)
Q Consensus 29 PldpLt~~Ei~~a~~~v~ 46 (672)
|-..||+.|+++|.+++.
T Consensus 37 pk~~Ls~~el~~A~~yl~ 54 (55)
T 2cs7_A 37 PKNELSASELAAAEAFLS 54 (55)
T ss_dssp EGGGSCHHHHHHHHHHHH
T ss_pred EhHHCCHHHHHHHHHHhc
Confidence 778999999999999875
Done!