BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005874
(672 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 125/491 (25%), Positives = 206/491 (41%), Gaps = 82/491 (16%)
Query: 113 FETICN----FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEE 168
F IC ASG+++ G +K E V + ++ + +R T V I
Sbjct: 55 FLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSF 114
Query: 169 ALCYSLNETEVTTVICGS---KELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRW 225
L + LN++E TT++ S + K +++ +G V+ V + + +++S V SG
Sbjct: 115 ELEHILNDSEATTLVVHSXLYENFKPVLEKTG----VERVFVVGGEV-NSLSEVXDSGS- 168
Query: 226 KITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI 285
F +V++ NP + DVA+I YT G+TG PKGV +TH N LA + + +
Sbjct: 169 --EDFENVKV----NPEE-------DVALIPYTGGTTGXPKGVXLTHFN-LAANALQLAV 214
Query: 286 VPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASV 345
L D + P H E NL VG+ + I+K
Sbjct: 215 ATGLSHXDTIVGCXPXFHSAEFGLVNLXVTVGNEYVVXGXFNQEXLAENIEK-------- 266
Query: 346 LRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLL 405
+ T +VP L+ + + + S K +D +Y + + GAW + L
Sbjct: 267 YKGTFSWAVPPALNVLVNTLES--------SNKTYDWSYLKVFAT------GAWPVAPAL 312
Query: 406 WNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFS- 464
L+ R+R Q +G TE C T +
Sbjct: 313 VEKLLKLAAEKCNNPRLRH------------------------NQIWGXTEACPXVTTNP 348
Query: 465 --EVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEK 522
+D S+ G P +K+I +G L GEIVI GPN+ GY+K E++
Sbjct: 349 PLRLDKSTTQ--GVPXSDIELKVISLEDGRELGVGE---SGEIVIRGPNIFKGYWKREKE 403
Query: 523 TKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSP 582
+E + D+KG ++F TGDVG + +G L DR K+++K + G ++ ++EA L
Sbjct: 404 NQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYK-GYTIAPFELEALLXKHE 462
Query: 583 YVDNIMMHADP 593
V ++ + P
Sbjct: 463 AVXDVAVIGKP 473
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 134/536 (25%), Positives = 210/536 (39%), Gaps = 99/536 (18%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
+TY Q A L LG K +RVA+ E+ G + V I L
Sbjct: 44 MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 103
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLD---TVKHVICMDANIPSAVSSVEQSG 223
+ + L+++ VI G+ + + Q D TV I D S+ +
Sbjct: 104 APEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGAD--------SLAERL 155
Query: 224 RWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVM 283
R V+ G +N IMYTSG+TG PKGV+ TH +V + S+
Sbjct: 156 RSAAADEPAVECGGDDN------------LFIMYTSGTTGHPKGVVHTHESVHSAASSWA 203
Query: 284 TIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDA 343
+ + D+ +D L LP+ HV L A G + T S I +
Sbjct: 204 STI-DVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEE----- 257
Query: 344 SVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEK 403
R + +VPAIL+ +R ++ + A L A + +F
Sbjct: 258 ---RVCIGGAVPAILNFMR---------------QVPEFA---ELDAPDFRYF------- 289
Query: 404 LLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIG--QGYGLTETCAGG 461
++GGAP+ + I I I QGY LTE+C GG
Sbjct: 290 ----------------------ITGGAPMP---EALIKIYAAKNIEVVQGYALTESCGGG 324
Query: 462 TFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEE 521
T +D+ A F + + G + GE+VI + Y+ E
Sbjct: 325 TLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG---EGEVVIKSDILLKEYWNRPE 381
Query: 522 KTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVS 581
T++ + D G WF TGD+G++ +G L I DR KD++ + GE V ++E+ +I
Sbjct: 382 ATRDAF---DNG--WFRTGDIGEIDDEGYLYIKDRLKDMI-ISGGENVYPAEIESVIIGV 435
Query: 582 PYVDNIMMHADPFHSY---CVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKI 634
P V + + P + A+VVA Q V E +Q + RL ++++P K+
Sbjct: 436 PGVSEVAVIGLPDEKWGEIAAAIVVADQNEVSE---QQIVEYCGTRLARYKLPKKV 488
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 117/426 (27%), Positives = 180/426 (42%), Gaps = 92/426 (21%)
Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLEL-VA 309
D+A I+YTSG+TG KG ++H N LA+ S + DV + LP+ H L VA
Sbjct: 156 DLAAILYTSGTTGRSKGAXLSHDN-LASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 310 ENL-IAGVGSAIGYGT--PLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVR 366
N+ + GS I P + D + R TV+ VP R+ R
Sbjct: 215 SNVTLFARGSXIFLPKFDPDKILDLXA-------------RATVLXGVPTFYTRLLQSPR 261
Query: 367 KKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFIL 426
+ G +LF I+GS
Sbjct: 262 LTKETTG--HXRLF----------ISGS-------------------------------- 277
Query: 427 SGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLI 486
APL ADT R + G + + YG TET + D G VG LP ++
Sbjct: 278 ---APLLADTHREWSAKTGHAVLERYGXTETNXNTSNPYDGDRVPGAVGPALPGVSARVT 334
Query: 487 DWPEGGYLTSDSPMPRGE---IVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVG 543
D PE G +PRG+ I + GPNV GY++ EKTK ++ D +F TGD+G
Sbjct: 335 D-PETG-----KELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDG----FFITGDLG 384
Query: 544 QVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSP-YVDNIMM---HADPFHSYCV 599
++ G + I+ R KD+V + G V ++E+ + P V++ ++ HAD F
Sbjct: 385 KIDERGYVHILGRGKDLV-ITGGFNVYPKEIESEIDAXPGVVESAVIGVPHAD-FGEGVT 442
Query: 600 ALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAI 659
A+VV + A + A Q + G + +L KF+ P K+ + + G K+++ +
Sbjct: 443 AVVVRDKGATIDEA--QVLHGLDGQLAKFKXPKKVIFVDDLPRNTXG------KVQKNVL 494
Query: 660 RKAFAD 665
R+ + D
Sbjct: 495 RETYKD 500
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 107/395 (27%), Positives = 161/395 (40%), Gaps = 86/395 (21%)
Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLEL-VA 309
D+A I+YTSG+TG G M++H N LA+ S + DV + LP+ H L VA
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDN-LASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 310 ENL-IAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKK 368
N+ + GS I L D + + R TV+ VP R+ R
Sbjct: 215 SNVTLFARGSMIF----LPXFDPDXILDL-------MARATVLMGVPTFYTRLLQSPRLT 263
Query: 369 VDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSG 428
+ G +R +SG
Sbjct: 264 XETTG-----------------------------------------------HMRLFISG 276
Query: 429 GAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDW 488
APL ADT R + G + + YG+TET + D G VG LP ++ D
Sbjct: 277 SAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD- 335
Query: 489 PEGGYLTSDSPMPRGE---IVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQV 545
PE G +PRG+ I + GPNV GY++ E T ++ D G +F TGD+G +
Sbjct: 336 PETG-----XELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFR--DDG--FFITGDLGXI 386
Query: 546 HADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSP-YVDNIMM---HADPFHSYCVAL 601
G + I+ R D+V + G V ++E+ + P V++ ++ HAD F A
Sbjct: 387 DERGYVHILGRGXDLV-ITGGFNVYPXEIESEIDAMPGVVESAVIGVPHAD-FGEGVTAF 444
Query: 602 VVASQPAVEEWAAKQGIV--GKNARLDKFEIPAKI 634
VV + E+A + V G + +L F +P +
Sbjct: 445 VVLXR----EFAPSEAQVLHGLDGQLAXFXMPXXV 475
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 106/399 (26%), Positives = 157/399 (39%), Gaps = 94/399 (23%)
Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLEL-VA 309
D+A I+YTSG+TG G M++H N LA+ S + DV + LP+ H L VA
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDN-LASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 310 ENL-IAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKK 368
N+ + GS I L D + + R TV+ VP R+ R
Sbjct: 215 SNVTLFARGSMIF----LPXFDPDXILDL-------MARATVLMGVPTFYTRLLQSPRLT 263
Query: 369 VDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSG 428
+ G +R +SG
Sbjct: 264 XETTG-----------------------------------------------HMRLFISG 276
Query: 429 GAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDW 488
APL ADT R + G + + YG+TET + D G VG LP ++ D
Sbjct: 277 SAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD- 335
Query: 489 PEGGYLTSDSPMPRGE---IVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQV 545
PE G +PRG+ I + GPNV GY++ E T ++ D G +F TGD+G +
Sbjct: 336 PETG-----XELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFR--DDG--FFITGDLGXI 386
Query: 546 HADGCLEIIDRKKDIV----------KLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH 595
G + I+ R D+V +++ G VE+A+I P+ D F
Sbjct: 387 DERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHAD--------FG 438
Query: 596 SYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKI 634
A+VV A + A Q + G + +L F +P +
Sbjct: 439 EGVTAVVVRDXGATIDEA--QVLHGLDGQLAXFXMPXXV 475
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 104/393 (26%), Positives = 158/393 (40%), Gaps = 79/393 (20%)
Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLEL-VA 309
D+A I+YTSG+TG G M++H N LA+ S + DV + LP+ H L VA
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDN-LASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 310 ENL-IAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKK 368
N+ + GS I L D + + R TV+ VP R+ R
Sbjct: 215 SNVTLFARGSMIF----LPXFDPDXILDL-------MARATVLMGVPTFYTRLLQSPRLT 263
Query: 369 VDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSG 428
+ G +R +SG
Sbjct: 264 XETTG-----------------------------------------------HMRLFISG 276
Query: 429 GAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDW 488
APL ADT R + G + + YG+TET + D G VG LP ++ D
Sbjct: 277 SAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD- 335
Query: 489 PEGGYLTSDSPMPRGE---IVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQV 545
PE G +PRG+ I + GPNV GY++ E T ++ D G +F TGD+G +
Sbjct: 336 PETG-----XELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFR--DDG--FFITGDLGXI 386
Query: 546 HADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSP-YVDNIMM---HADPFHSYCVAL 601
G + I+ R D+V + G V ++E+ + P V++ ++ HAD +
Sbjct: 387 DERGYVHILGRGXDLV-ITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAFV 445
Query: 602 VVASQPAVEEWAAKQGIVGKNARLDKFEIPAKI 634
V+ + A E A++ RL F +P +
Sbjct: 446 VLXREFAPSEILAEELXAFVXDRLAXFXMPXXV 478
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 108/472 (22%), Positives = 167/472 (35%), Gaps = 72/472 (15%)
Query: 108 TYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGE 167
TYG+ E FAS L LG EER+ + VA G V V L
Sbjct: 50 TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTP 109
Query: 168 EALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKI 227
Y L + VI ++ +++ L++ +H C + S + ++
Sbjct: 110 ADYVYMLTHSHARAVIASGALVQ---NVTQALESAEHDGC------QLIVSQPRESEPRL 160
Query: 228 TSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP 287
+ I A D+A +Y+SGSTG PKG + TH N+ T +
Sbjct: 161 APLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL 220
Query: 288 DLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLR 347
+ DV + A L G G PL++ T+ + + DA R
Sbjct: 221 GIAENDVVFS-----------AAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFAR 269
Query: 348 PTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWN 407
++ P + +G+ L N
Sbjct: 270 --LVEHRPTVF----------------------------------------YGVPTLYAN 287
Query: 408 LLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVD 467
+LV + A IR S G L + G I G G TE +
Sbjct: 288 MLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAG 347
Query: 468 DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVY 527
G G P+P I+L D E G+ D + G++ I GP+ V Y+ N EK++ +
Sbjct: 348 AVEYGTTGRPVPGYEIELRD--EAGHAVPDGEV--GDLYIKGPSAAVMYWNNREKSRATF 403
Query: 528 KVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALI 579
+ W +GD +GC R D++K+ G+YVS +VE L+
Sbjct: 404 LGE-----WIRSGDKYCRLPNGCYVYAGRSDDMLKVS-GQYVSPVEVEMVLV 449
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 81/161 (50%), Gaps = 9/161 (5%)
Query: 425 ILSGGAPLSADTQRFINICLGAP-IGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFI 483
I SGGAPLS + + P + QGYGLTET + + D G G +P
Sbjct: 314 IASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKA 373
Query: 484 KLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVG 543
K+ID L P RGE+ + GP + GY N E TKE+ +D++G W +TGD+G
Sbjct: 374 KVIDLDTKKSL---GPNRRGEVCVKGPMLMKGYVNNPEATKEL--IDEEG--WLHTGDIG 426
Query: 544 QVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
+ I+DR K ++K + G V ++E+ L+ P +
Sbjct: 427 YYDEEKHFFIVDRLKSLIKYK-GYQVPPAELESVLLQHPSI 466
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 35/203 (17%)
Query: 108 TYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGE 167
+Y + E L G + R+A+ ++ E+F+ + V V
Sbjct: 54 SYAEYLEKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTL 113
Query: 168 EALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIP--------SAVSSV 219
L +SL ++ T V K L K++ + + T+K ++ +D+ + + +
Sbjct: 114 RELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRN 173
Query: 220 EQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATV 279
G ++ +SF V++ +E VA+IM +SGSTGLPKGV +TH N++
Sbjct: 174 TPPG-FQASSFKTVEVDRKEQ-----------VALIMNSSGSTGLPKGVQLTHENIVTRF 221
Query: 280 S---------------AVMTIVP 287
S AV+T+VP
Sbjct: 222 SHARDPIYGNQVSPGTAVLTVVP 244
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 81/161 (50%), Gaps = 9/161 (5%)
Query: 425 ILSGGAPLSADTQRFINICLGAP-IGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFI 483
I SGGAPLS + + P + QGYGLTET + + D G G +P
Sbjct: 314 IASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKA 373
Query: 484 KLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVG 543
K+ID L P RGE+ + GP + GY N E TKE+ +D++G W +TGD+G
Sbjct: 374 KVIDLDTKKSL---GPNRRGEVCVKGPMLMKGYVNNPEATKEL--IDEEG--WLHTGDIG 426
Query: 544 QVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
+ I+DR K ++K + G V ++E+ L+ P +
Sbjct: 427 YYDEEKHFFIVDRLKSLIKYK-GYQVPPAELESVLLQHPSI 466
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 35/203 (17%)
Query: 108 TYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGE 167
+Y + E C L G + R+A+ ++ E+F+ + V V
Sbjct: 54 SYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTL 113
Query: 168 EALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIP--------SAVSSV 219
L +SL ++ T V K L K++ + + T+K ++ +D+ + + +
Sbjct: 114 RELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRN 173
Query: 220 EQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATV 279
G ++ +SF V++ +E VA+IM +SGSTGLPKGV +TH N++
Sbjct: 174 TPPG-YQASSFKTVEVDRKEQ-----------VALIMNSSGSTGLPKGVQLTHENIVTRF 221
Query: 280 S---------------AVMTIVP 287
S AV+T+VP
Sbjct: 222 SHARDPIYGNQVSPGTAVLTVVP 244
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 81/161 (50%), Gaps = 9/161 (5%)
Query: 425 ILSGGAPLSADTQRFINICLGAP-IGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFI 483
I SGGAPLS + + P + QGYGLTET + + D G G +P
Sbjct: 314 IASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKA 373
Query: 484 KLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVG 543
K+ID L P RGE+ + GP + GY N E TKE+ +D++G W +TGD+G
Sbjct: 374 KVIDLDTKKSL---GPNRRGEVCVKGPMLMKGYVNNPEATKEL--IDEEG--WLHTGDIG 426
Query: 544 QVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
+ I+DR K ++K + G V ++E+ L+ P +
Sbjct: 427 YYDEEKHFFIVDRLKSLIKYK-GYQVPPAELESVLLQHPSI 466
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 35/203 (17%)
Query: 108 TYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGE 167
+Y + E C L G + R+A+ ++ E+F+ + V V
Sbjct: 54 SYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTL 113
Query: 168 EALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIP--------SAVSSV 219
L +SL ++ T V K L K++ + + T+K ++ +D+ + + +
Sbjct: 114 RELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRN 173
Query: 220 EQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATV 279
G ++ +SF V++ +E VA+IM +SGSTGLPKGV +TH N++
Sbjct: 174 TPPG-FQASSFKTVEVDRKEQ-----------VALIMNSSGSTGLPKGVQLTHENIVTRF 221
Query: 280 S---------------AVMTIVP 287
S AV+T+VP
Sbjct: 222 SHARDPIYGNQVSPGTAVLTVVP 244
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 132/545 (24%), Positives = 216/545 (39%), Gaps = 103/545 (18%)
Query: 108 TYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGE 167
TY A+ +LG + + V + E+ ++ R T
Sbjct: 90 TYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTP 149
Query: 168 EALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKI 227
+ + +I ++ + K+ L V ++C+D N + G +
Sbjct: 150 AEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVV--IVCIDDNESVPIPE----GCLRF 203
Query: 228 TSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVS-AVMTIV 286
T E +D+ DV + Y+SG+TGLPKGVM+TH ++ +V+ V
Sbjct: 204 TELTQSTTEASEV-IDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGEN 262
Query: 287 PDL--GSKDVYLAYLPLAHVLELVAENLIA-GVGSAIGYGTPLTLTDTSSKIKKGTQGDA 343
P+L S DV L LP+ H+ L + L VG+AI + I++ A
Sbjct: 263 PNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVA 322
Query: 344 SVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEK 403
++ P V+A AK ++K +DL+ R
Sbjct: 323 PMVPPIVLAI-----------------AKSSETEK-YDLSSIR----------------- 347
Query: 404 LLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQGYGLTETCAGGT 462
+ SG APL + + +N A +GQGYG+TE AG
Sbjct: 348 --------------------VVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTE--AGPV 385
Query: 463 FSEVDDSSVGRVGAPLP-----CSFI------KLIDWPEGGYLTSDSPMPRGEIVIAGPN 511
+ S+G P P C + K++D G L+ + P GEI I G
Sbjct: 386 LA----MSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQP---GEICIRGHQ 438
Query: 512 VTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSL 571
+ GY N T E +D G W +TGD+G + D L I+DR K+++K + G V+
Sbjct: 439 IMKGYLNNPAATAET--IDKDG--WLHTGDIGLIDDDDELFIVDRLKELIKYK-GFQVAP 493
Query: 572 GKVEAALIVSPYVDN---IMMHADPFHSYCVALVVASQPA------VEEWAAKQGIVGKN 622
++EA LI P + + + M + VA VV S+ + V+++ +KQ + K
Sbjct: 494 AELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYK- 552
Query: 623 ARLDK 627
R++K
Sbjct: 553 -RINK 556
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 95/208 (45%), Gaps = 24/208 (11%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
+TY + FE C A + + G + +A+ ++ ++F+ + G V V
Sbjct: 85 ITYSEYFEMACRLAETMKRYGLGLQHHIAVCSENSLQFFMPVCGALFIGVGVAPTNDIYN 144
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
E L SL+ ++ T V C + L+K++ + +L ++ ++ +D S + G+
Sbjct: 145 ERELYNSLSISQPTIVFCSKRALQKILGVQKKLPIIQKIVILD-------SREDYMGKQS 197
Query: 227 ITSFADVQILGRENPVDADY-PVSAD----VAVIMYTSGSTGLPKGVMMTHGNVLATVSA 281
+ SF + + N + DY P S D A+IM +SGSTGLPKGV +TH N+ S
Sbjct: 198 MYSFIESHLPAGFN--EYDYIPDSFDRETATALIMNSSGSTGLPKGVELTHKNICVRFSH 255
Query: 282 VM------TIVPDLGSKDVYLAYLPLAH 303
I+PD L +P H
Sbjct: 256 CRDPVFGNQIIPD----TAILTVIPFHH 279
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 79/162 (48%), Gaps = 10/162 (6%)
Query: 425 ILSGGAPLSADTQRFINICLGAP-IGQGYGLTETCAGGTFSEVD-DSSVGRVGAPLPCSF 482
I SGGAPL+ + + P I QGYGLTET + + D G G +P
Sbjct: 346 IASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITPRGRDDKPGACGKVVPFFS 405
Query: 483 IKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDV 542
K++D G L + RGE+ + GP + GY N E T + +D G W ++GD+
Sbjct: 406 AKIVDLDTGKTLGVNQ---RGELCVKGPMIMKGYVNNPEATSAL--IDKDG--WLHSGDI 458
Query: 543 GQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
DG I+DR K ++K + G V ++E+ L+ P++
Sbjct: 459 AYYDKDGYFFIVDRLKSLIKYK-GYQVPPAELESILLQHPFI 499
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 27/200 (13%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
+TY + FE A + + G R+ + ++ ++F+ + G V V
Sbjct: 56 ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYN 115
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
E L S+N ++ T V K L+K++++ +L ++ +I MD S + G
Sbjct: 116 ERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMD-------SKTDYQGFQS 168
Query: 227 ITSFADVQILGRENPVDADYPVSAD----VAVIMYTSGSTGLPKGVMMTH---------- 272
+ +F + N D P S D +A+IM +SGSTGLPKGV + H
Sbjct: 169 MYTFVTSHLPPGFNEYDF-VPESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSHA 227
Query: 273 -----GNVLATVSAVMTIVP 287
GN +A +A++++VP
Sbjct: 228 RDPIFGNQIAPDTAILSVVP 247
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 79/161 (49%), Gaps = 9/161 (5%)
Query: 425 ILSGGAPLSADTQRFINICLGAP-IGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFI 483
I SGGAPLS + + P I QGYGLTET + + D G VG +P
Sbjct: 317 IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPKGDDKPGAVGKVVPFFEA 376
Query: 484 KLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVG 543
K++D G L + RGE+ + GP + GY N E T + +D G W ++GD+
Sbjct: 377 KVVDLDTGKTLGVNQ---RGELSVRGPMIMSGYVNNPEATNAL--IDKDG--WLHSGDIA 429
Query: 544 QVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
D I+DR K ++K + G V+ ++E+ L+ P +
Sbjct: 430 YWDEDEHFFIVDRLKSLIKYK-GCQVAPAELESILLQHPNI 469
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 126/532 (23%), Positives = 209/532 (39%), Gaps = 89/532 (16%)
Query: 108 TYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGE 167
TY T ASGL ++G ++ + + +F + E+ +A G R +
Sbjct: 51 TYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTP 110
Query: 168 EALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKI 227
L + +I + +K+ D + + D V+C+D S+ + +
Sbjct: 111 AELAKHAKASRAKLLITQACYYEKVKDFARESDV--KVMCVD-------SAPDGCLHFSE 161
Query: 228 TSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVS-AVMTIV 286
+ AD EN DV + Y+SG+TGLPKGVM+TH ++ +V+ V
Sbjct: 162 LTQAD------ENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDN 215
Query: 287 PDL--GSKDVYLAYLPLAHVLELVAENLIA-GVGSAIGYGTPLTLTDTSSKIKKGTQGDA 343
P+L S+DV L LP+ H+ L + L VG+ I + I+K A
Sbjct: 216 PNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIA 275
Query: 344 SVLRPTVM--ASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGL 401
V+ P +M A P + +R L K+L D A+ A G +G
Sbjct: 276 PVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEA 335
Query: 402 EKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGG 461
+L L F+K
Sbjct: 336 GPVLAMCLAFAK------------------------------------------------ 347
Query: 462 TFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEE 521
E D G G + + +K++D G L + P GEI I G + GY + E
Sbjct: 348 ---EPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQP---GEICIRGDQIMKGYLNDPE 401
Query: 522 KTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVS 581
T +D +G W +TGD+G + D L I+DR K+++K + G V+ ++EA LI
Sbjct: 402 ATSRT--IDKEG--WLHTGDIGYIDDDDELFIVDRLKELIKYK-GFQVAPAELEALLIAH 456
Query: 582 PYVDN---IMMHADPFHSYCVALVVASQPA------VEEWAAKQGIVGKNAR 624
P + + + + + VA VV S+ + ++++ +KQ I K +
Sbjct: 457 PEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIK 508
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 79/161 (49%), Gaps = 9/161 (5%)
Query: 425 ILSGGAPLSADTQRFINICLGAP-IGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFI 483
I SGGAPLS + + P I QGYGLTET + + D G VG +P
Sbjct: 312 IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEA 371
Query: 484 KLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVG 543
K++D G L + RGE+ + GP + GY N E T + +D G W ++GD+
Sbjct: 372 KVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNAL--IDKDG--WLHSGDIA 424
Query: 544 QVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
D I+DR K ++K + G V+ ++E+ L+ P +
Sbjct: 425 YWDEDEHFFIVDRLKSLIKYK-GYQVAPAELESILLQHPNI 464
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 89/200 (44%), Gaps = 27/200 (13%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
+TY + FE A + + G R+ + ++ ++F+ + G V V
Sbjct: 51 ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYN 110
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
E L S+N ++ T V K L+K++++ +L ++ +I MD S + G
Sbjct: 111 ERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMD-------SKTDYQGFQS 163
Query: 227 ITSFADVQILGRENPVDADYPVSAD----VAVIMYTSGSTGLPKGVMMTH---------- 272
+ +F + N D P S D +A+IM +SGSTGLPKGV + H
Sbjct: 164 MYTFVTSHLPPGFNEYDF-VPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHA 222
Query: 273 -----GNVLATVSAVMTIVP 287
GN + +A++++VP
Sbjct: 223 RDPIFGNQIIPDTAILSVVP 242
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 79/161 (49%), Gaps = 9/161 (5%)
Query: 425 ILSGGAPLSADTQRFINICLGAP-IGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFI 483
I SGGAPLS + + P I QGYGLTET + + D G VG +P
Sbjct: 312 IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEA 371
Query: 484 KLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVG 543
K++D G L + RGE+ + GP + GY N E T + +D G W ++GD+
Sbjct: 372 KVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNAL--IDKDG--WLHSGDIA 424
Query: 544 QVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
D I+DR K ++K + G V+ ++E+ L+ P +
Sbjct: 425 YWDEDEHFFIVDRLKSLIKYK-GYQVAPAELESILLQHPNI 464
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 89/200 (44%), Gaps = 27/200 (13%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
+TY + FE A + + G R+ + ++ ++F+ + G V V
Sbjct: 51 ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYN 110
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
E L S+N ++ T V K L+K++++ +L ++ +I MD S + G
Sbjct: 111 ERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMD-------SKTDYQGFQS 163
Query: 227 ITSFADVQILGRENPVDADYPVSAD----VAVIMYTSGSTGLPKGVMMTH---------- 272
+ +F + N D P S D +A+IM +SGSTGLPKGV + H
Sbjct: 164 MYTFVTSHLPPGFNEYDF-VPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHA 222
Query: 273 -----GNVLATVSAVMTIVP 287
GN + +A++++VP
Sbjct: 223 RDPIFGNQIIPDTAILSVVP 242
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 79/161 (49%), Gaps = 9/161 (5%)
Query: 425 ILSGGAPLSADTQRFINICLGAP-IGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFI 483
I SGGAPLS + + P I QGYGLTET + + D G VG +P
Sbjct: 317 IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEA 376
Query: 484 KLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVG 543
K++D G L + RGE+ + GP + GY N E T + +D G W ++GD+
Sbjct: 377 KVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNAL--IDKDG--WLHSGDIA 429
Query: 544 QVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
D I+DR K ++K + G V+ ++E+ L+ P +
Sbjct: 430 YWDEDEHFFIVDRLKSLIKYK-GYQVAPAELESILLQHPNI 469
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 89/200 (44%), Gaps = 27/200 (13%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
+TY + FE A + + G R+ + ++ ++F+ + G V V
Sbjct: 56 ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYN 115
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
E L S+N ++ T V K L+K++++ +L ++ +I MD S + G
Sbjct: 116 ERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMD-------SKTDYQGFQS 168
Query: 227 ITSFADVQILGRENPVDADYPVSAD----VAVIMYTSGSTGLPKGVMMTH---------- 272
+ +F + N D P S D +A+IM +SGSTGLPKGV + H
Sbjct: 169 MYTFVTSHLPPGFNEYDF-VPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHA 227
Query: 273 -----GNVLATVSAVMTIVP 287
GN + +A++++VP
Sbjct: 228 RDPIFGNQIIPDTAILSVVP 247
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 103/416 (24%), Positives = 165/416 (39%), Gaps = 83/416 (19%)
Query: 184 CGSKELKKLVDLSGQLDTVKHVICM--DANIPSAVSSVEQSGRWKITSFADVQILGRENP 241
G KEL ++ D+ ++ DA +P A+ ++E+ DV + R
Sbjct: 102 SGDKELAHILS-----DSAPSLVLAPPDAELPPALGALER---------VDVDVRAR-GA 146
Query: 242 VDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPL 301
V D D A+++YTSG+TG PKG ++ LAT + +DV + LPL
Sbjct: 147 VPEDGADDGDPALVVYTSGTTGPPKGAVIPR-RALATTLDALADAWQWTGEDVLVQGLPL 205
Query: 302 AHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKK-GTQGDASVLR--PTVMASVPAIL 358
HV LV +G PL + + + T+G A L T++ VP +
Sbjct: 206 FHVHGLV-----------LGILGPLRRGGSVRHLGRFSTEGAARELNDGATMLFGVPTMY 254
Query: 359 DRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAIL 418
R+ + + A L+K LA AR
Sbjct: 255 HRIAE----TLPADPELAKA---LAGAR-------------------------------- 275
Query: 419 GGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPL 478
++SG A L I G + + YG+TET + + G VG PL
Sbjct: 276 -----LLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPL 330
Query: 479 PCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFY 538
P ++L++ +G + + GEI + GPN+ Y + T + D +F
Sbjct: 331 PGVELRLVEE-DGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDG----FFR 385
Query: 539 TGDVGQVHADGCLEIIDRK-KDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADP 593
TGD+ DG + I+ RK D++K G + G++E AL+ P V + +P
Sbjct: 386 TGDMAVRDPDGYVRIVGRKATDLIK-SGGYKIGAGEIENALLEHPEVREAAVTGEP 440
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 106/262 (40%), Gaps = 37/262 (14%)
Query: 45 RFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEY 104
R + ST + L + E++ L G ++++SR LH GE
Sbjct: 5 RMNAFPSTMMDEELNLWDFLERAAA------LFGRKEVVSR-------------LHTGEV 45
Query: 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYAS 164
TY + ++ GL LG +RVA A + T
Sbjct: 46 HRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPR 105
Query: 165 LGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGR 224
L + + Y LN E ++ L + + G+L TV+H + MD P + E++
Sbjct: 106 LSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEA-- 163
Query: 225 WKITSFADVQILGRE-NPVDADYPVSADVAVIMYTSGSTGLPKGVMMTH-GNVLATVSAV 282
LG E +PV + +A YT+G+TGLPKGV+ +H VL +++A
Sbjct: 164 -----------LGEEADPVRVPERAACGMA---YTTGTTGLPKGVVYSHRALVLHSLAAS 209
Query: 283 MTIVPDLGSKDVYLAYLPLAHV 304
+ L KDV L +P+ HV
Sbjct: 210 LVDGTALSEKDVVLPVVPMFHV 231
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 98/210 (46%), Gaps = 35/210 (16%)
Query: 423 RFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAG----------GTFSEVDDSSV- 471
R ++ G A + RF +G + QGYGLTET + SE + ++
Sbjct: 297 RLVVGGSAAPRSLIARFER--MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLK 354
Query: 472 GRVGAPLPCSFIKLIDWPEGGYLTSDSPMPR-----GEIVIAGPNVTVGYFKNEEKTKEV 526
+ G P+P +++ D P+P+ GE+ + GP +T GY+ NEE T+
Sbjct: 355 AKTGLPIPLVRLRVAD-------EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSA 407
Query: 527 YKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDN 586
D +F TGD+ +G +EI DR KD++K GE++S +E AL+ P V
Sbjct: 408 LTPDG----FFRTGDIAVWDEEGYVEIKDRLKDLIK-SGGEWISSVDLENALMGHPKVKE 462
Query: 587 IMMHADP---FHSYCVALVV--ASQPAVEE 611
+ A P + +A+VV +P EE
Sbjct: 463 AAVVAIPHPKWQERPLAVVVPRGEKPTPEE 492
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 115/279 (41%), Gaps = 48/279 (17%)
Query: 37 PGHALRNCRFTS-LVSTSWEGISTL---AELFEQSCKEHGDKYLLGTRQLISRETEVADN 92
P ++N F VS W TL A ++ +E+GD+ + + +
Sbjct: 51 PYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAI-----------IWEG 99
Query: 93 GRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCF 152
+ + H+ +Y + +C FA+ L LG KK + VAI+ E VA+ C
Sbjct: 100 DDTSQSKHI------SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACA 153
Query: 153 RRNVTVVTIYASLGEEALCYSLNETEVTTVICG--------SKELKKLVD---LSGQLDT 201
R I+ EA+ + ++ VI S LKK VD + + +
Sbjct: 154 RIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTS 213
Query: 202 VKHVICMDANIPSAVSSVE-QSGR---WKITSFADVQILGRENPVDADYPVSA-DVAVIM 256
V+HVI + S ++ Q GR W+ ++ + +P ++A D I+
Sbjct: 214 VEHVIVLK----RTGSDIDWQEGRDLWWR-------DLIEKASPEHQPEAMNAEDPLFIL 262
Query: 257 YTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY 295
YTSGSTG PKGV+ T G L + V D D+Y
Sbjct: 263 YTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIY 301
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 115/279 (41%), Gaps = 48/279 (17%)
Query: 37 PGHALRNCRFTS-LVSTSWEGISTL---AELFEQSCKEHGDKYLLGTRQLISRETEVADN 92
P ++N F VS W TL A ++ +E+GD+ + + +
Sbjct: 51 PYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAI-----------IWEG 99
Query: 93 GRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCF 152
+ + H+ +Y + +C FA+ L LG KK + VAI+ E VA+ C
Sbjct: 100 DDTSQSKHI------SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACA 153
Query: 153 RRNVTVVTIYASLGEEALCYSLNETEVTTVICG--------SKELKKLVD---LSGQLDT 201
R I+ EA+ + ++ VI S LKK VD + + +
Sbjct: 154 RIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTS 213
Query: 202 VKHVICMDANIPSAVSSVE-QSGR---WKITSFADVQILGRENPVDADYPVSA-DVAVIM 256
V+HVI + S ++ Q GR W+ ++ + +P ++A D I+
Sbjct: 214 VEHVIVLK----RTGSDIDWQEGRDLWWR-------DLIEKASPEHQPEAMNAEDPLFIL 262
Query: 257 YTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY 295
YTSGSTG PKGV+ T G L + V D D+Y
Sbjct: 263 YTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIY 301
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 115/279 (41%), Gaps = 48/279 (17%)
Query: 37 PGHALRNCRFTS-LVSTSWEGISTL---AELFEQSCKEHGDKYLLGTRQLISRETEVADN 92
P ++N F VS W TL A ++ +E+GD+ + + +
Sbjct: 51 PYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAI-----------IWEG 99
Query: 93 GRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCF 152
+ + H+ +Y + +C FA+ L LG KK + VAI+ E VA+ C
Sbjct: 100 DDTSQSKHI------SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACA 153
Query: 153 RRNVTVVTIYASLGEEALCYSLNETEVTTVICG--------SKELKKLVD---LSGQLDT 201
R I+ EA+ + ++ VI S LKK VD + + +
Sbjct: 154 RIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTS 213
Query: 202 VKHVICMDANIPSAVSSVE-QSGR---WKITSFADVQILGRENPVDADYPVSA-DVAVIM 256
V+HVI + S ++ Q GR W+ ++ + +P ++A D I+
Sbjct: 214 VEHVIVLK----RTGSDIDWQEGRDLWWR-------DLIEKASPEHQPEAMNAEDPLFIL 262
Query: 257 YTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY 295
YTSGSTG PKGV+ T G L + V D D+Y
Sbjct: 263 YTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIY 301
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 115/279 (41%), Gaps = 48/279 (17%)
Query: 37 PGHALRNCRFTS-LVSTSWEGISTL---AELFEQSCKEHGDKYLLGTRQLISRETEVADN 92
P ++N F VS W TL A ++ +E+GD+ + + +
Sbjct: 51 PYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAI-----------IWEG 99
Query: 93 GRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCF 152
+ + H+ +Y + +C FA+ L LG KK + VAI+ E VA+ C
Sbjct: 100 DDTSQSKHI------SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACA 153
Query: 153 RRNVTVVTIYASLGEEALCYSLNETEVTTVICG--------SKELKKLVD---LSGQLDT 201
R I+ EA+ + ++ VI S LKK VD + + +
Sbjct: 154 RIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTS 213
Query: 202 VKHVICMDANIPSAVSSVE-QSGR---WKITSFADVQILGRENPVDADYPVSA-DVAVIM 256
V+HVI + S ++ Q GR W+ ++ + +P ++A D I+
Sbjct: 214 VEHVIVLK----RTGSDIDWQEGRDLWWR-------DLIEKASPEHQPEAMNAEDPLFIL 262
Query: 257 YTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY 295
YTSGSTG PKGV+ T G L + V D D+Y
Sbjct: 263 YTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIY 301
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 115/279 (41%), Gaps = 48/279 (17%)
Query: 37 PGHALRNCRFTS-LVSTSWEGISTL---AELFEQSCKEHGDKYLLGTRQLISRETEVADN 92
P ++N F VS W TL A ++ +E+GD+ + + +
Sbjct: 51 PYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAI-----------IWEG 99
Query: 93 GRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCF 152
+ + H+ +Y + +C FA+ L LG KK + VAI+ E VA+ C
Sbjct: 100 DDTSQSKHI------SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACA 153
Query: 153 RRNVTVVTIYASLGEEALCYSLNETEVTTVICG--------SKELKKLVD---LSGQLDT 201
R I+ EA+ + ++ VI S LKK VD + + +
Sbjct: 154 RIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGASIPLKKNVDDALKNPNVTS 213
Query: 202 VKHVICMDANIPSAVSSVE-QSGR---WKITSFADVQILGRENPVDADYPVSA-DVAVIM 256
V+HVI + S ++ Q GR W+ ++ + +P ++A D I+
Sbjct: 214 VEHVIVLK----RTGSDIDWQEGRDLWWR-------DLIEKASPEHQPEAMNAEDPLFIL 262
Query: 257 YTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY 295
YTSGSTG PKGV+ T G L + V D D+Y
Sbjct: 263 YTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIY 301
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 115/279 (41%), Gaps = 48/279 (17%)
Query: 37 PGHALRNCRFTS-LVSTSWEGISTL---AELFEQSCKEHGDKYLLGTRQLISRETEVADN 92
P ++N F VS W TL A ++ +E+GD+ + + +
Sbjct: 51 PYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAI-----------IWEG 99
Query: 93 GRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCF 152
+ + H+ +Y + +C FA+ L LG KK + VAI+ E VA+ C
Sbjct: 100 DDTSQSKHI------SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACA 153
Query: 153 RRNVTVVTIYASLGEEALCYSLNETEVTTVICG--------SKELKKLVD---LSGQLDT 201
R I+ EA+ + ++ VI S LKK VD + + +
Sbjct: 154 RIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTS 213
Query: 202 VKHVICMDANIPSAVSSVE-QSGR---WKITSFADVQILGRENPVDADYPVSA-DVAVIM 256
V+HVI + S ++ Q GR W+ ++ + +P ++A D I+
Sbjct: 214 VEHVIVLK----RTGSDIDWQEGRDLWWR-------DLIEKASPEHQPEAMNAEDPLFIL 262
Query: 257 YTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY 295
YTSGSTG PKGV+ T G L + V D D+Y
Sbjct: 263 YTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIY 301
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 115/279 (41%), Gaps = 48/279 (17%)
Query: 37 PGHALRNCRFTS-LVSTSWEGISTL---AELFEQSCKEHGDKYLLGTRQLISRETEVADN 92
P ++N F VS W TL A ++ +E+GD+ + + +
Sbjct: 51 PYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAI-----------IWEG 99
Query: 93 GRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCF 152
+ + H+ +Y + +C FA+ L LG KK + VAI+ E VA+ C
Sbjct: 100 DDTSQSKHI------SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACA 153
Query: 153 RRNVTVVTIYASLGEEALCYSLNETEVTTVICG--------SKELKKLVD---LSGQLDT 201
R I+ EA+ + ++ VI S LKK VD + + +
Sbjct: 154 RIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTS 213
Query: 202 VKHVICMDANIPSAVSSVE-QSGR---WKITSFADVQILGRENPVDADYPVSA-DVAVIM 256
V+HVI + S ++ Q GR W+ ++ + +P ++A D I+
Sbjct: 214 VEHVIVLK----RTGSDIDWQEGRDLWWR-------DLIEKASPEHQPEAMNAEDPLFIL 262
Query: 257 YTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY 295
YTSGSTG PKGV+ T G L + V D D+Y
Sbjct: 263 YTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIY 301
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 82/180 (45%), Gaps = 25/180 (13%)
Query: 437 QRFINICLGAPIGQGYGLTETCAGGTFSEVDD--SSVGRVGAPLPCSFIKLIDWPEGGYL 494
+RF C A +G +ET TF+ D S GR PL + ++D
Sbjct: 287 ERFEATCPNATFWATFGQSETSGLSTFAPYRDRPKSAGR---PLFWRTVAVVD------- 336
Query: 495 TSDSPMPRGE---IVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCL 551
D P+P GE IV+ GP V GY+ N T+ ++ W +TGD+G+ ADG L
Sbjct: 337 AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR-----NGWHHTGDMGRFDADGYL 391
Query: 552 EIIDR--KKDIVKLQHGEYVSLGKVEAALIVSPYVDN--IMMHADPFHSYCVALVVASQP 607
R +K+++K GE V +VE AL P + + ++ DP S + V +P
Sbjct: 392 FYAGRAPEKELIK-TGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKP 450
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 83/201 (41%), Gaps = 16/201 (7%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
LT+ ASGL + G +RVAI + +E + ++ + L
Sbjct: 32 LTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLN 91
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
+ + + L + + V+ G+ D V V+ + A + + SG
Sbjct: 92 ADEIAFVLGDGAPSVVVAGTD----------YRDIVAGVLPSLGGVKKAYAIGDGSG--- 138
Query: 227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV 286
FA + L + P A +AD VI++T+ G P+G +++ GN+L S+++
Sbjct: 139 --PFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW 196
Query: 287 PDLGSKDVYLAYLPLAHVLEL 307
L DV L LPL HV L
Sbjct: 197 -RLTEADVNLGMLPLFHVTGL 216
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 119/505 (23%), Positives = 201/505 (39%), Gaps = 89/505 (17%)
Query: 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYAS 164
E TY Q + A+ L G K +RV + A GC V IY
Sbjct: 39 ETXTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPP 98
Query: 165 LGEEALCYS---LNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS-AVSSVE 220
E+ L + + ++ V+ + +KK + +L+T + IP+ A+ S+E
Sbjct: 99 AQEKLLDKAQRIVTNSKPVIVLXIADHIKKFT--ADELNTNPKFL----KIPAIALESIE 152
Query: 221 --QSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAT 278
+S W+ TS S D+A + YTSGST PKGV ++H N+L
Sbjct: 153 LNRSSSWQPTSIK-----------------SNDIAFLQYTSGSTXHPKGVXVSHHNLLDN 195
Query: 279 VSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENL--IAGVGSAIGYGTPLTLTDTSSKIK 336
++ + T + + ++LP H L+ L I G AI L + S +K
Sbjct: 196 LNKIFTSF-HXNDETIIFSWLPPHHDXGLIGCILTPIYGGIQAIXXSPFSFLQNPLSWLK 254
Query: 337 KGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSW- 395
T+ A++ A + R+R+ ++ +D ++ F+ A R +
Sbjct: 255 HITKYKATISGSPNFA-YDYCVKRIREEKKEGLDLSSWVTA--FNGAEPVREETXEHFYQ 311
Query: 396 -FGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGL 454
F +G K + + A L +++GG P G Y
Sbjct: 312 AFKEFGFRKEAF-YPCYGLAEATL------LVTGGTP-----------------GSSYK- 346
Query: 455 TETCAGGTFSE-----VDDSSVGR---VGAPLPCSFIKLIDWPEGGYLTSDSPMP----- 501
T T A F + DD+S G V + P +K+ID D+ +P
Sbjct: 347 TLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIID--------PDTLIPCDFDQ 398
Query: 502 RGEIVIAGPNVTVGYFKNEEKTKEVY----KVDDKGMRWFYTGDVGQVHADGCLEIIDRK 557
GEI + +V GY+ E+T+ + K D++ + TGD+G +H + L + R
Sbjct: 399 VGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENE-LYVTGRI 457
Query: 558 KDIVKLQHGEYVSLGKVEAALIVSP 582
KD++ + +G+ +E +L SP
Sbjct: 458 KDLIII-YGKNHYPQDIEFSLXHSP 481
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 113/251 (45%), Gaps = 36/251 (14%)
Query: 422 IRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGT-FSEVDDSSVGRVGAPLPC 480
++ + GGA R + L + Q +G+ E T + D+ G P+
Sbjct: 309 LKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISS 368
Query: 481 S-FIKLIDWPEGGYLTSDSPMPRGEI---VIAGPNVTVGYFKNEEKTKEVYKVDDKGMRW 536
IK++D +P GEI GP GY+++ E +V+ D+ +
Sbjct: 369 DDEIKIVD-------EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDN----Y 417
Query: 537 FYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHA----- 591
+Y+GD+ Q DG L ++ R KD + + GE ++ ++E +++ P V MHA
Sbjct: 418 YYSGDLVQRTPDGNLRVVGRIKDQIN-RGGEKIASEEIEKLILLHPEV----MHAALVAI 472
Query: 592 --DPFHSYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVT 649
+ F A +V+ P ++ ++ ++ + ++++P +IKL+ E+ +T
Sbjct: 473 VDEQFGEKSCAFIVSRNPELKAVVLRRHLM--ELGIAQYKLPDQIKLI------ESLPLT 524
Query: 650 AALKIKREAIR 660
A K+ ++ +R
Sbjct: 525 AVGKVDKKQLR 535
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 105/236 (44%), Gaps = 15/236 (6%)
Query: 408 LLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVD 467
L+ S ++L F+ G + ++ I A I YG TE T V
Sbjct: 250 LMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVT 309
Query: 468 DSSVGRVGAPLPCSFIK----LIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKT 523
+ + + + LP + K L+ E G + D +GEIVI GP+V+VGY + E T
Sbjct: 310 EEVLDQYKS-LPVGYCKSDCRLLIMKEDGTIAPDGE--KGEIVIVGPSVSVGYLGSPELT 366
Query: 524 KEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPY 583
++ + + D G R + TGD G V +G L R +KL HG + L ++E L Y
Sbjct: 367 EKAFTMID-GERAYKTGDAGYVE-NGLLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSY 423
Query: 584 VDN---IMMHADPFHSYCVALVVASQPAVEEWAAKQGIVGK--NARLDKFEIPAKI 634
V+ + + + Y +A+VV + + E+ + K N RL + IP K
Sbjct: 424 VEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKF 479
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 229 SFADVQILGRENPVDADYPVSADVAV-IMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP 287
+ D+ + N + ++ V D I+YTSGSTG PKGV +T+ N L + +
Sbjct: 122 NLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITY-NCLVSFTKWAVEDF 180
Query: 288 DLGSKDVYLAYLPLAHVLELV 308
+L + V+L P + L ++
Sbjct: 181 NLQTGQVFLNQAPFSFDLSVM 201
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 105/236 (44%), Gaps = 15/236 (6%)
Query: 408 LLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVD 467
L+ S ++L F+ G + ++ I A I YG TE T V
Sbjct: 250 LMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVT 309
Query: 468 DSSVGRVGAPLPCSFIK----LIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKT 523
+ + + + LP + K L+ E G + D +GEIVI GP+V+VGY + E T
Sbjct: 310 EEVLDQYKS-LPVGYCKSDCRLLIMKEDGTIAPDGE--KGEIVIVGPSVSVGYLGSPELT 366
Query: 524 KEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPY 583
++ + + D G R + TGD G V +G L R +KL HG + L ++E L Y
Sbjct: 367 EKAFTMID-GERAYKTGDAGYVE-NGLLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSY 423
Query: 584 VDN---IMMHADPFHSYCVALVVASQPAVEEWAAKQGIVGK--NARLDKFEIPAKI 634
V+ + + + Y +A+VV + + E+ + K N RL + IP K
Sbjct: 424 VEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKF 479
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 229 SFADVQILGRENPVDADYPVSADVAV-IMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP 287
+ D+ + N + ++ V D I+YTSGSTG PKGV +T+ N L + +
Sbjct: 122 NLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITY-NCLVSFTKWAVEDF 180
Query: 288 DLGSKDVYLAYLPLAHVLELV 308
+L + V+L P + L ++
Sbjct: 181 NLQTGQVFLNQAPFSFDLSVM 201
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 123/573 (21%), Positives = 224/573 (39%), Gaps = 128/573 (22%)
Query: 102 GEYEWLTYGQAFETICNF---ASGLAQ-LGHKKEERVAIFADTRAEWFVALQGCFRRNVT 157
G + +T GQ T N AS LA+ L ++ RV ++ D + + + C+ N+
Sbjct: 15 GHHIAITDGQESYTYQNLYCEASLLAKRLKAYQQSRVGLYIDNSIQSIILIHACWLANIE 74
Query: 158 VVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVS 217
+ I L + + +V + C ++L G ++ +D +I A
Sbjct: 75 IAMINTRLTPNEMTNQMRSIDVQLIFCTLP-----LELRG-----FQIVSLD-DIEFAGR 123
Query: 218 SVEQSGRWKIT-----SFADVQILGRENP---VDADYPVSADVAVIMYTSGSTGLPKGVM 269
+ +G T ++ ++ +E+P ++ + + D+A IM+TSG+TG K V
Sbjct: 124 DITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLD-DIASIMFTSGTTGPQKAVP 182
Query: 270 MTHGNVLATVSAVMTIVPDLG-SKDV-YLAYLPLAHVLELVAENLIAGVGSAIGYGTPLT 327
T N A+ LG +D +L+ LP+ H+
Sbjct: 183 QTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHI----------------------- 216
Query: 328 LTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARR 387
G + +LR + I+D+ ++++ + R
Sbjct: 217 ------------SGLSVLLRAVIEGFTVRIVDKFN-------------AEQILTMIKNER 251
Query: 388 LSAIN-----GSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINI 442
++ I+ +W GL + +NL + IL G GA LSA T +
Sbjct: 252 ITHISLVPQTLNWLMQQGLHE-PYNL------QKILLG--------GAKLSA-TMIETAL 295
Query: 443 CLGAPIGQGYGLTETCAG--GTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPM 500
PI +G+TETC+ E+ + VG P +K+ + + G+
Sbjct: 296 QYNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEGH------- 348
Query: 501 PRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMR---WFYTGDVGQVHADGCLEIIDRK 557
GE++I G NV GY +Y D G +F TGD+ ++ +G + I DR+
Sbjct: 349 --GELMIKGANVMNGY---------LYPTDLTGTFENGYFNTGDIAEIDHEGYVMIYDRR 397
Query: 558 KDIVKLQHGEYVSLGKVEAALIVSPYVDNIMM--HADPFHSYCVALVVASQPAVEEWAAK 615
KD++ + GE + ++E P + + + H D L S+ + +
Sbjct: 398 KDLI-ISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDI---SKA 453
Query: 616 QGIVGKNARLDKFEIPAKI-KLLSYPWTSEAGL 647
Q I + L K+++P K+ + P+TS L
Sbjct: 454 QLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKL 486
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 109/249 (43%), Gaps = 30/249 (12%)
Query: 428 GGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSS---VGRVGAPL-PCSFI 483
GGA SA+ R + G + Q +G+ E ++ +DD V G P+ P
Sbjct: 306 GGAKFSAEAARRVKAVFGCTLQQVFGMAEGLV--NYTRLDDPEEIIVNTQGKPMSPYDES 363
Query: 484 KLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVG 543
++ D + P G ++ GP GY+K EE + D ++ TGD+
Sbjct: 364 RVWD----DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDG----FYRTGDIV 415
Query: 544 QVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH----SYCV 599
++ DG + + R KD + + GE V+ +VE L+ P V + M + P CV
Sbjct: 416 RLTRDGYIVVEGRAKDQIN-RGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCV 474
Query: 600 ALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLL-SYPWTSEAGLVTAALKIKREA 658
++ + AA+ + L ++IP +++ + S+P T K+ ++A
Sbjct: 475 FIIPRDEAPK---AAELKAFLRERGLAAYKIPDRVEFVESFPQTGVG-------KVSKKA 524
Query: 659 IRKAFADDL 667
+R+A ++ L
Sbjct: 525 LREAISEKL 533
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 120/564 (21%), Positives = 214/564 (37%), Gaps = 106/564 (18%)
Query: 118 NFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNET 177
A+G +LG ++++RV + E+F + FR V S + Y
Sbjct: 62 RLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFA 121
Query: 178 EVTTVICGSK----ELKKLV-DLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFAD 232
E I + + L + +L T+K++I + F
Sbjct: 122 EAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAG----------------EAEEFLP 165
Query: 233 VQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSK 292
++ L E PV S+DVA + + GSTGL K + TH + + ++ + + L
Sbjct: 166 LEDLHTE-PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCW-LDHS 223
Query: 293 DVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVL----RP 348
VYLA LP AH L + GV + G + L+ + S DA L +
Sbjct: 224 TVYLAALPXAHNYPLSS----PGVLGVLYAGGRVVLSPSPSP------DDAFPLIEREKV 273
Query: 349 TVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNL 408
T+ A VP + D + D DL+ + L + G+ F A
Sbjct: 274 TITALVPPLAXVWXDAASSRRD----------DLSSLQVLQ-VGGAKFSAEAAR------ 316
Query: 409 LVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDD 468
+V+A+ G ++ + G GL E+
Sbjct: 317 ----RVKAVFGCTLQQVF----------------------GXAEGLVNYTRLDDPEEIIV 350
Query: 469 SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYK 528
++ G+ +P S + W + + P G ++ GP GY+K EE +
Sbjct: 351 NTQGKPXSPYDESRV----WDD--HDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFT 404
Query: 529 VDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIM 588
D ++ TGD+ ++ DG + + R KD + + GE V+ +VE L+ P V +
Sbjct: 405 EDG----FYRTGDIVRLTRDGYIVVEGRAKDQIN-RGGEKVAAEEVENHLLAHPAVHDAA 459
Query: 589 MHADPFH----SYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLL-SYPWTS 643
+ P CV ++ + AA+ + L ++IP +++ + S+P T
Sbjct: 460 XVSXPDQFLGERSCVFIIPRDEAPK---AAELKAFLRERGLAAYKIPDRVEFVESFPQTG 516
Query: 644 EAGLVTAALKIKREAIRKAFADDL 667
K+ ++A+R+A ++ L
Sbjct: 517 VG-------KVSKKALREAISEKL 533
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 84/199 (42%), Gaps = 28/199 (14%)
Query: 401 LEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSAD---TQRFINICLGAPIGQGYGLTET 457
L L+N LV A G +R+ ++GG P S R + L +G GYG E+
Sbjct: 309 LSASLFNFLVDEVPEAFEG--VRYAITGGEPASVPHVAKARRDHPALR--LGNGYGPAES 364
Query: 458 CAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGG---YLTSDSPMPR-----GEIVIAG 509
T V + G LP I P G Y+ D P GE+ +AG
Sbjct: 365 MGFTTHHAVVAGDLS--GTALP------IGVPLAGKRAYVLDDDLKPAANGALGELYVAG 416
Query: 510 PNVTVGYFKNEEKTKEVYKVDD----KGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQH 565
+ GY T E + D G R + TGD+ + ADG LE + R D VK++
Sbjct: 417 AGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIR- 475
Query: 566 GEYVSLGKVEAALIVSPYV 584
G V G+VEA L+ P V
Sbjct: 476 GFRVEPGEVEARLVGHPAV 494
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 62/172 (36%), Gaps = 30/172 (17%)
Query: 101 LGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVT 160
L E + LTYG E A L LG V + + + VAL +
Sbjct: 95 LHEADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTM 154
Query: 161 IYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVE 220
+ E L SL +T G+ L LSG+L + D A +
Sbjct: 155 LDPQFPVERLALSLEDT-------GAPLLVTSRPLSGRLTGTTTLYVEDEAASDAPAGNL 207
Query: 221 QSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTH 272
+G +G E DVA +M+TSGSTG PKGVM H
Sbjct: 208 ATG------------VGPE-----------DVACVMFTSGSTGRPKGVMSPH 236
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 86/212 (40%), Gaps = 17/212 (8%)
Query: 96 FEKLHLGEYEWLTYGQAFETICNFASGLA-QLGHKKEERVAIFADTRAEWFVALQGCFRR 154
FE G+ +TY + E +C A L +G +K + VA++ E + L R
Sbjct: 103 FEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRI 162
Query: 155 NVTVVTIYASLGEEALCYSLNETEVTTVICGSK--------ELKKLVDLS-GQLDTVKHV 205
++A +L +N+ + VI + E K++VD + + V+HV
Sbjct: 163 GAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHV 222
Query: 206 ICM-DANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGL 264
+ N PS + W T + PVD++ P+ ++YTSGSTG
Sbjct: 223 LVYRKTNNPSVAFHAPRDLDWA-TEKKKYKTYYPCTPVDSEDPL-----FLLYTSGSTGA 276
Query: 265 PKGVMMTHGNVLATVSAVMTIVPDLGSKDVYL 296
PKGV + L M D +DV+
Sbjct: 277 PKGVQHSTAGYLLGALLTMRYTFDTHQEDVFF 308
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 508 AGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGE 567
A P+ +KN ++ + Y G +++TGD DG + I+ R D+V + G
Sbjct: 478 AWPSFARTIWKNHDRYLDTYLNPYPG--YYFTGDGAAKDKDGYIWILGRVDDVVNVS-GH 534
Query: 568 YVSLGKVEAALIVSPYV 584
+S ++EAA+I P V
Sbjct: 535 RLSTAEIEAAIIEDPIV 551
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 82/204 (40%), Gaps = 24/204 (11%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
+TY Q A L LG K +RVA+ E+ G + V I L
Sbjct: 30 MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 89
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLD---TVKHVICMDANIPSAVSSVEQSG 223
+ + L+++ VI G+ + + Q D TV I D S+ +
Sbjct: 90 APEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGAD--------SLAERL 141
Query: 224 RWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVM 283
R V+ G +N IMYTSG+TG PKGV+ TH +V + S+
Sbjct: 142 RSAAADEPAVECGGDDN------------LFIMYTSGTTGHPKGVVHTHESVHSAASSWA 189
Query: 284 TIVPDLGSKDVYLAYLPLAHVLEL 307
+ + D+ +D L LP+ HV L
Sbjct: 190 STI-DVRYRDRLLLPLPMFHVAAL 212
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 13/136 (9%)
Query: 422 IRFILSGGAPLSADTQRFINICLGAPIG--QGYGLTETCAGGTFSEVDDSSVGRVGAPLP 479
R+ ++GGAP+ + I I I QGY LTE+C GGT +D+ A
Sbjct: 272 FRYFITGGAPMP---EALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRA 328
Query: 480 CSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYT 539
F + + G + GE+VI + Y+ E T++ + D G WF T
Sbjct: 329 TMFTDVAVRGDDGVIREHG---EGEVVIKSDILLKEYWNRPEATRDAF---DNG--WFRT 380
Query: 540 GDVGQVHADGCLEIID 555
GD+G++ +G L I D
Sbjct: 381 GDIGEIDDEGYLYIKD 396
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 445 GAPIGQGYGLTETCAGGTFSE-----VDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSP 499
A I YG TE + E VD+ + +G P P S +ID +G L+S
Sbjct: 290 SAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDE-DGKELSSGE- 347
Query: 500 MPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCL 551
+GEI++ GP V+ GY N EKT E + KG ++TGD+G + D L
Sbjct: 348 --QGEIIVTGPAVSKGYLNNPEKTAEAF-FTFKGQPAYHTGDIGSLTEDNIL 396
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLA 277
D I++TSG+TG PKGV ++H N+L+
Sbjct: 146 DNYYIIFTSGTTGQPKGVQISHDNLLS 172
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 80/191 (41%), Gaps = 21/191 (10%)
Query: 120 ASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEV 179
A L L KK +RVA+ A+T +E+ A C + V + G
Sbjct: 62 AKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPXG------------- 108
Query: 180 TTVICGSKELKKLVDLSGQLDTVK--HVICMDANIPSAVSSVEQSGRWKITSFADVQILG 237
G ++ L G L + + +I D +P ++ + + S A + L
Sbjct: 109 ----VGQRD-SWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVLSHAWFKALP 163
Query: 238 RENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLA 297
E V PV D+A + YTSGST P+GV++TH V A + A+ L D ++
Sbjct: 164 -EADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDGIKLRPGDRCVS 222
Query: 298 YLPLAHVLELV 308
+LP H LV
Sbjct: 223 WLPFYHDXGLV 233
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 503 GEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIV 561
G I I+GP++ GYF ++ E+ W TGD+G + DG L + R KD++
Sbjct: 411 GHICISGPSLXSGYFGDQVSQDEI-----AATGWLDTGDLGYL-LDGYLYVTGRIKDLI 463
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 94/239 (39%), Gaps = 35/239 (14%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
LT+ Q + N A L++ G + RV I A E+ VA G + V + G
Sbjct: 59 LTWSQLYRRTLNVAQELSRCGSTGD-RVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQG 117
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
+ + +V+ S + L S D V+HV P ++ V+
Sbjct: 118 ------GVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVD------ 165
Query: 227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT-- 284
D+ + +YP +A + YTSGST P GV+M+H NV +M+
Sbjct: 166 ---LLDLDAPNGYTFKEDEYPSTA---YLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY 219
Query: 285 ------IVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKK 337
I P +++LP H + L+ G+ + I G P LT S +++
Sbjct: 220 FADTDGIPP---PNSALVSWLPFYHDM-----GLVIGICAPILGGYPAVLTSPVSFLQR 270
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 87/200 (43%), Gaps = 19/200 (9%)
Query: 446 APIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSD---SPMP- 501
A I YG TE T E+ + + R + LP F K P+ D P+P
Sbjct: 287 AKIFNTYGPTEATVAVTSVEITNDVISRSES-LPVGFAK----PDMNIFIMDEEGQPLPE 341
Query: 502 --RGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKD 559
+GEIVIAGP+V+ GY E T++ + +G + TGD G + DG + R
Sbjct: 342 GEKGEIVIAGPSVSRGYLGEPELTEKAF-FSHEGQWAYRTGDAGFIQ-DGQIFCQGRLDF 399
Query: 560 IVKLQHGEYVSLGKVEAALIVSPYVDN---IMMHADPFHSYCVALVVASQPAVEEWAAKQ 616
+KL HG + L ++E + S YV + I + Y +A +V + E+
Sbjct: 400 QIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLT 458
Query: 617 GIVGKN--ARLDKFEIPAKI 634
+ K A L + IP K
Sbjct: 459 SAIKKELAASLPAYMIPRKF 478
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 255 IMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELV 308
I+YTSGSTG PKGV ++ N+ + + P G K ++L P + L ++
Sbjct: 148 IIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGK-IFLNQAPFSFDLSVM 200
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 126/278 (45%), Gaps = 49/278 (17%)
Query: 405 LW-NLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTF 463
LW L+ + RA L ++ + GGA LSA I +G + Q +G+ E +
Sbjct: 287 LWLQALIEGESRAQLAS-LKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLV--NY 343
Query: 464 SEVDDSS---VGRVGAPLPCSFIKLIDWPEGGYLTSD---SPMPRGEI---VIAGPNVTV 514
+ +DDS+ + G P+ C P+ +D +P+P+GE+ + GP
Sbjct: 344 TRLDDSAEKIIHTQGYPM-C--------PDDEVWVADAEGNPLPQGEVGRLMTRGPYTFR 394
Query: 515 GYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKV 574
GY+K+ + + D G ++ +GD+ + +G + + R+KD + + GE ++ ++
Sbjct: 395 GYYKSPQHNASAF--DANG--FYCSGDLISIDPEGYITVQGREKDQIN-RGGEKIAAEEI 449
Query: 575 EAALIVSP---YVDNIMMHADPFHSYCVALVVASQP----AVEEWAAKQGIVGKNARLDK 627
E L+ P Y + M + A +V +P V + +QGI +
Sbjct: 450 ENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAVQVRRFLREQGIA-------E 502
Query: 628 FEIPAKIKLL-SYPWTSEAGLVTAALKIKREAIRKAFA 664
F++P +++ + S P +TA K+ ++ +R+ A
Sbjct: 503 FKLPDRVECVDSLP-------LTAVGKVDKKQLRQWLA 533
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 82/170 (48%), Gaps = 19/170 (11%)
Query: 422 IRFILSGGAPLSADT-QRFINICLGAPIGQGYGLTETCAG-GTFSEVDDSSVGRVGAPLP 479
+++ + G PL+ + RF+ G + +G+G TET TF ++ G +G P P
Sbjct: 343 LKYAVVAGEPLNPEVFNRFLEFT-GIKLMEGFGQTETVVTIATFPWMEPKP-GSIGKPTP 400
Query: 480 CSFIKLIDWPEGGYLTSDSPMPRGEIVI----AGP-NVTVGYFKNEEKTKEVYKVDDKGM 534
I+L+D G L GEIVI P + V Y K+ E+T+E +
Sbjct: 401 GYKIELMD--RDGRLCEVGE--EGEIVINTMEGKPVGLFVHYGKDPERTEETWHDG---- 452
Query: 535 RWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
+++TGD+ + DG L + R DI+K G V +VE+ALI P V
Sbjct: 453 -YYHTGDMAWMDEDGYLWFVGRADDIIKTS-GYKVGPFEVESALIQHPAV 500
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 105/244 (43%), Gaps = 35/244 (14%)
Query: 451 GYGLTETCAGGTFSEVDDSSVGR---VGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVI 507
YG TET T ++G +GAP+ + I ++D L S GE+ I
Sbjct: 322 AYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD----ENLQLKSVGEAGELCI 377
Query: 508 AGPNVTVGYFKNEEKTKEVYKVDD---KGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQ 564
G + GY+K E T + + VD+ G + + TGD + +DG +E + R + VK++
Sbjct: 378 GGEGLARGYWKRPELTSQKF-VDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIR 436
Query: 565 HGEYVSLGKVEAALIVSPYVDN--IMMHAD----PFHSYCVALVVASQPAVEEWAAKQGI 618
G V L +VE+ L+ Y+ + +H D P+ C V +E+
Sbjct: 437 -GHRVELEEVESILLKHMYISETAVSVHKDHQEQPY--LCAYFVSEKHIPLEQLRQ---- 489
Query: 619 VGKNARLDKFEIPAK-IKLLSYPWTSEAGL---------VTAALKIKREAIRKAFADDLA 668
+ L + IP+ I+L P TS + +T +++ EA R + L
Sbjct: 490 -FSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPDLTFGMRVDYEAPRNEIEETLV 548
Query: 669 RLYE 672
+++
Sbjct: 549 TIWQ 552
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 72/173 (41%), Gaps = 26/173 (15%)
Query: 103 EYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIY 162
E E LTY + A + G K+ V I + + F+ + + V I
Sbjct: 61 ENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPID 120
Query: 163 ASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQS 222
+E + Y L++++ ++ T KH++ + + +++ +
Sbjct: 121 IEYPKERIQYILDDSQARMLL-----------------TQKHLVHL-------IHNIQFN 156
Query: 223 GRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNV 275
G+ +I F + I RE S D+A ++YTSG+TG PKG M+ H +
Sbjct: 157 GQVEI--FEEDTIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGI 207
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 94/249 (37%), Gaps = 41/249 (16%)
Query: 103 EYEW------LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNV 156
E +W LT+ Q + N A L++ G + RV I A E+ VA G +
Sbjct: 49 EQDWDGVAITLTWSQLYRRTLNVAQELSRCGSTGD-RVVISAPQGLEYVVAFLGALQAGR 107
Query: 157 TVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216
V + G + + +V+ S + L S D V+HV P ++
Sbjct: 108 IAVPLSVPQG------GVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSI 161
Query: 217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVL 276
V+ D+ + +YP +A + YTSGST P GV+ +H NV
Sbjct: 162 IEVD---------LLDLDAPNGYTFKEDEYPSTA---YLQYTSGSTRTPAGVVXSHQNVR 209
Query: 277 ATVSAVMT--------IVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTL 328
+ + I P +++LP H L+ G+ + I G P L
Sbjct: 210 VNFEQLXSGYFADTDGIPP---PNSALVSWLPFYH-----DXGLVIGICAPILGGYPAVL 261
Query: 329 TDTSSKIKK 337
T S +++
Sbjct: 262 TSPVSFLQR 270
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 77/195 (39%), Gaps = 36/195 (18%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
L+Y + E A L + G K VA++ E + + G + + + L
Sbjct: 490 LSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLP 549
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
E+ + Y L ++ ++ +E+K+ A +P +++
Sbjct: 550 EDRISYMLADSAAACLLT-HQEMKEQA----------------AELPYTGTTL------- 585
Query: 227 ITSFADVQILGRENPVDADYPVSA----DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV 282
F D Q E D P +A D A IMYTSG+TG PKG + TH N+ V V
Sbjct: 586 ---FIDDQTRFEEQASD---PATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKHV 639
Query: 283 MTIVPDLGSKDVYLA 297
+ +D +L+
Sbjct: 640 DYMA--FSDQDTFLS 652
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 18/173 (10%)
Query: 503 GEIVIAGPNVTVGYFKNEEKTKEVYKVD--DKGMRWFYTGDVGQVHADGCLEIIDRKKDI 560
GE+ I+G V+ GY + TKE + + G + TGD+ + DG +E R D
Sbjct: 804 GELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQ 863
Query: 561 VKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH----SYCVALVVASQPAVEEWAAKQ 616
VK++ G + L ++E L P V + ++ AD S LV +Q + E+ A
Sbjct: 864 VKIR-GHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQLSAEDVKAHL 922
Query: 617 GIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLAR 669
K ++PA + ++ + E L T K+ + + K D LA
Sbjct: 923 ----------KKQLPAYMVPQTFTFLDELPLTTNG-KVNKRLLPKPDQDQLAE 964
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 247 PVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLA 302
P + D+A ++YTSG+TG PKGV + H NVLA ++ ++ D D +L + L+
Sbjct: 172 PGAEDMAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVF-DFSGDDRWLLFHSLS 226
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 21/179 (11%)
Query: 416 AILGGR----IRFILSGGAPLSADTQRFINICLG---APIGQGYGLTETCAGGTFSEVDD 468
A+ GGR +R+++ GG L+A R G + GYG+TET TF E+ +
Sbjct: 284 AVRGGRDVSGLRYVIFGGEKLTAPMLRPWAKAFGLDRPRLVNGYGITETTVFTTFEEITE 343
Query: 469 SSVGR----VGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK 524
+ + + +G LP +++ G +P GE+ ++G + GY + E T
Sbjct: 344 AYLAQDASIIGRALPSFGTRVV----GDDGRDVAPGETGELWLSGAQLAEGYLRRPELTA 399
Query: 525 EVYK--VDDK---GMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAAL 578
E + D+K +R++ TGD+ DG R +KL+ G + L +E A+
Sbjct: 400 EKFPEVTDEKTGESVRYYRTGDLVSELPDGRFAYEGRADLQIKLR-GYRIELSDIETAV 457
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 68/171 (39%), Gaps = 27/171 (15%)
Query: 401 LEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSAD---TQRFINICLGAPIGQGYGLTET 457
L L+N LV A G +R+ ++GG P S R + L +G GYG E+
Sbjct: 309 LSASLFNFLVDEVPEAFEG--VRYAITGGEPASVPHVAKARRDHPAL--RLGNGYGPAES 364
Query: 458 CAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGG---YLTSDSPMPR-----GEIVIAG 509
T V + G LP I P G Y+ D P GE+ +AG
Sbjct: 365 MGFTTHHAVVAGDLS--GTALP------IGVPLAGKRAYVLDDDLKPAANGALGELYVAG 416
Query: 510 PNVTVGYFKNEEKTKEVYKVDD----KGMRWFYTGDVGQVHADGCLEIIDR 556
+ GY T E + D G R + TGD+ + ADG LE + R
Sbjct: 417 AGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGR 467
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 34/72 (47%), Gaps = 13/72 (18%)
Query: 209 DANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVS--------ADVAVIMYTSG 260
D P V+S SGR T+ L E+ +D P DVA +M+TSG
Sbjct: 170 DTGAPLLVTSRPLSGRLTGTT-----TLYVEDEAASDAPAGNLATGVGPEDVACVMFTSG 224
Query: 261 STGLPKGVMMTH 272
STG PKGVM H
Sbjct: 225 STGRPKGVMSPH 236
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 68/167 (40%), Gaps = 11/167 (6%)
Query: 445 GAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGE 504
G I + YG TET S+ G +G C +++ID +G L P G+
Sbjct: 347 GLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIID-DKGNVL---PPGTEGD 402
Query: 505 IVI-AGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKL 563
I I P +G F + + +G W GD G DG + + R DI+
Sbjct: 403 IGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLL-GDRGIKDEDGYFQFMGRADDIIN- 460
Query: 564 QHGEYVSLGKVEAALIVSPYV--DNIMMHADPFHSYCVA--LVVASQ 606
G + +VE AL+ P V ++ DP V +V+ASQ
Sbjct: 461 SSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQ 507
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 59/140 (42%), Gaps = 12/140 (8%)
Query: 127 GHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGS 186
G ++ +RVA+ EW++ + GC R + + + + Y L ++ ++ G
Sbjct: 95 GLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGD 154
Query: 187 KELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADY 246
+ ++ ++DTV C I VS G + + + V+
Sbjct: 155 EVIQ-------EVDTVASE-CPSLRIKLLVSEKSCDGWLNFKKLLN-EASTTHHCVETG- 204
Query: 247 PVSADVAVIMYTSGSTGLPK 266
S + + I +TSG++GLPK
Sbjct: 205 --SQEASAIYFTSGTSGLPK 222
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 68/167 (40%), Gaps = 11/167 (6%)
Query: 445 GAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGE 504
G I + YG TET S+ G +G C +++ID +G L P G+
Sbjct: 347 GLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIID-DKGNVL---PPGTEGD 402
Query: 505 IVI-AGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKL 563
I I P +G F + + +G W GD G DG + + R DI+
Sbjct: 403 IGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLL-GDRGIKDEDGYFQFMGRADDIIN- 460
Query: 564 QHGEYVSLGKVEAALIVSPYV--DNIMMHADPFHSYCVA--LVVASQ 606
G + +VE AL+ P V ++ DP V +V+ASQ
Sbjct: 461 SSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQ 507
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 59/140 (42%), Gaps = 12/140 (8%)
Query: 127 GHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGS 186
G ++ +RVA+ EW++ + GC R + + + + Y L ++ ++ G
Sbjct: 95 GLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGD 154
Query: 187 KELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADY 246
+ ++ ++DTV C I VS G + + + V+
Sbjct: 155 EVIQ-------EVDTVASE-CPSLRIKLLVSEKSCDGWLNFKKLLN-EASTTHHCVETG- 204
Query: 247 PVSADVAVIMYTSGSTGLPK 266
S + + I +TSG++GLPK
Sbjct: 205 --SQEASAIYFTSGTSGLPK 222
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 503 GEIVIAGPNVT-VGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIV 561
GE+++A + VGY E T E K+ D W+ T DV +G + I+ R D++
Sbjct: 351 GELIVAASDSAFVGYLNQPEATAE--KLQDG---WYRTSDVAVWTPEGTVRILGRVDDMI 405
Query: 562 KLQHGEYVSLGKVEAALIVSPYVDNIMM 589
+ GE + ++E L +P V +++
Sbjct: 406 -ISGGENIHPSEIERVLGTAPGVTEVVV 432
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 31/209 (14%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
LT+ + + A+ L G + ++RVA+ A A+ +A+ R + L
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGR-W 225
L + E+T VI + + A+ QSG
Sbjct: 90 SAELAELIKRGEMTAA----------------------VIAVGRQVADAIF---QSGSGA 124
Query: 226 KITSFADVQILGRE----NPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA 281
+I D+ G P++ A A I YTSG+TGLPK ++ + V
Sbjct: 125 RIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLF 184
Query: 282 VMTIVP-DLGSKDVYLAYLPLAHVLELVA 309
+ T V G +V L +PL HV+ A
Sbjct: 185 MSTQVGLRHGRHNVVLGLMPLYHVVGFFA 213
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 503 GEIVIAGPNVT-VGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIV 561
GE+++A + VGY + T E K+ D W+ T DV +G + I+ R D++
Sbjct: 351 GELIVAASDSAFVGYLNQPQATAE--KLQDG---WYRTSDVAVWTPEGTVRILGRVPDMI 405
Query: 562 KLQHGEYVSLGKVEAALIVSPYVDNIMM 589
+ GE + ++E L +P V +++
Sbjct: 406 -ISGGENIHPSEIERVLGTAPGVTEVVV 432
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 31/209 (14%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
LT+ + + A+ L G + ++RVA+ A A+ +A+ R + L
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGR-W 225
L + E+T VI + + A+ QSG
Sbjct: 90 SAELAELIKRGEMTAA----------------------VIAVGRQVADAIF---QSGSGA 124
Query: 226 KITSFADVQILGRE----NPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA 281
+I D+ G P++ A A I YTSG+TGLPK ++ + V
Sbjct: 125 RIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLF 184
Query: 282 VMTIVP-DLGSKDVYLAYLPLAHVLELVA 309
+ T V G +V L +PL HV+ A
Sbjct: 185 MSTQVGLRHGRHNVVLGLMPLYHVVGFFA 213
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 245 DYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYL 296
+YP + D A ++YTSGSTG PKGV ++ N+ + A ++ ++ K + L
Sbjct: 171 NYPENLD-AYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLEL 221
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 503 GEIVIAGPNVT-VGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIV 561
GE+++A + VGY + T E K+ D W+ T DV +G + I+ R D++
Sbjct: 351 GELIVAASDSAFVGYLNQPQATAE--KLQDG---WYRTSDVAVWTPEGTVRILGRVDDMI 405
Query: 562 KLQHGEYVSLGKVEAALIVSPYVDNIMM 589
+ GE + ++E L +P V +++
Sbjct: 406 -ISGGENIHPSEIERVLGTAPGVTEVVV 432
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 31/209 (14%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
LT+ + + A+ L G + ++RVA+ A A+ +A+ R + L
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGR-W 225
L + E+T VI + + A+ QSG
Sbjct: 90 SAELAELIKRGEMTAA----------------------VIAVGRQVADAIF---QSGSGA 124
Query: 226 KITSFADVQILGRE----NPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA 281
+I D+ G P++ A A I YTSG+TGLPK ++ + V
Sbjct: 125 RIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLF 184
Query: 282 VMTIVP-DLGSKDVYLAYLPLAHVLELVA 309
+ T V G +V L +PL HV+ A
Sbjct: 185 MSTQVGLRHGRHNVVLGLMPLYHVVGFFA 213
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 503 GEIVIAGPNVT-VGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIV 561
GE+++A + VGY + T E K+ D W+ T DV +G + I+ R D++
Sbjct: 351 GELIVAASDSAFVGYLNQPQATAE--KLQDG---WYRTSDVAVWTPEGTVRILGRVDDMI 405
Query: 562 KLQHGEYVSLGKVEAALIVSPYVDNIMM 589
+ GE + ++E L +P V +++
Sbjct: 406 -ISGGENIHPSEIERVLGTAPGVTEVVV 432
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 31/209 (14%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
LT+ + + A+ L G + ++RVA+ A A+ +A+ R + L
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGR-W 225
L + E+T VI + + A+ QSG
Sbjct: 90 SAELAELIKRGEMTAA----------------------VIAVGRQVADAIF---QSGSGA 124
Query: 226 KITSFADVQILGRE----NPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA 281
+I D+ G P++ A A I YTSG+TGLPK ++ + V
Sbjct: 125 RIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLF 184
Query: 282 VMTIVP-DLGSKDVYLAYLPLAHVLELVA 309
+ T V G +V L +PL HV+ A
Sbjct: 185 MSTQVGLRHGRHNVVLGLMPLYHVVGFFA 213
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 503 GEIVIAGPNVT-VGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIV 561
GE+++A + VGY + T E K+ D W+ T DV +G + I+ R D++
Sbjct: 351 GELIVAASDSAFVGYLNQPQATAE--KLQDG---WYRTSDVAVWTPEGTVRILGRVDDMI 405
Query: 562 KLQHGEYVSLGKVEAALIVSPYVDNIMM 589
+ GE + ++E L +P V +++
Sbjct: 406 -ISGGENIHPSEIERVLGTAPGVTEVVV 432
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 241 PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP-DLGSKDVYLAYL 299
P++ A A I YTSG+TGLPK ++ + V + T V G +V L +
Sbjct: 144 PIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLM 203
Query: 300 PLAHVLELVA 309
PL HV+ A
Sbjct: 204 PLYHVVGFFA 213
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 503 GEIVIAGPNVT-VGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIV 561
GE+++A + VGY + T E K+ D W+ T DV +G + I+ R D +
Sbjct: 351 GELIVAASDSAFVGYLNQPQATAE--KLQDG---WYRTSDVAVWTPEGTVRILGRVDDXI 405
Query: 562 KLQHGEYVSLGKVEAALIVSPYVDNIMM 589
+ GE + ++E L +P V +++
Sbjct: 406 -ISGGENIHPSEIERVLGTAPGVTEVVV 432
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 241 PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP-DLGSKDVYLAYL 299
P++ A A I YTSG+TGLPK ++ + V T V G +V L
Sbjct: 144 PIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFXSTQVGLRHGRHNVVLGLX 203
Query: 300 PLAHVLELVA 309
PL HV+ A
Sbjct: 204 PLYHVVGFFA 213
>pdb|3TIH|A Chain A, Crystal Structure Of Unliganded Hiv-1 Clade C Strain
Zm109f.Pb4 Gp120 Core
pdb|3TIH|B Chain B, Crystal Structure Of Unliganded Hiv-1 Clade C Strain
Zm109f.Pb4 Gp120 Core
pdb|3TIH|C Chain C, Crystal Structure Of Unliganded Hiv-1 Clade C Strain
Zm109f.Pb4 Gp120 Core
pdb|3TIH|D Chain D, Crystal Structure Of Unliganded Hiv-1 Clade C Strain
Zm109f.Pb4 Gp120 Core
Length = 345
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 49/134 (36%), Gaps = 25/134 (18%)
Query: 410 VFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTF----SE 465
V K++ IRF G L T F C G F SE
Sbjct: 213 VSEKLKEYFNKTIRFAQHSGGDLEVTTHSF-----------------NCRGEFFYCNTSE 255
Query: 466 VDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIV----IAGPNVTVGYFKNEE 521
+ +S+ LPC ++I+ +G +P RGEI I G +T N
Sbjct: 256 LFNSNATESNITLPCRIKQIINMWQGVGRAMYAPPIRGEIKCTSNITGILLTRDGGNNNN 315
Query: 522 KTKEVYKVDDKGMR 535
T+E+++ + MR
Sbjct: 316 STEEIFRPEGGNMR 329
>pdb|2P88|A Chain A, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|B Chain B, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|C Chain C, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|D Chain D, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|E Chain E, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|F Chain F, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|G Chain G, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|H Chain H, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P8B|A Chain A, Crystal Structure Of N-Succinyl ArgLYS RACEMASE FROM
Bacillus Cereus Atcc 14579 Complexed With N-Succinyl
Lys.
pdb|2P8C|A Chain A, Crystal Structure Of N-Succinyl ArgLYS RACEMASE FROM
Bacillus Cereus Atcc 14579 Complexed With N-Succinyl Arg
Length = 369
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 13/103 (12%)
Query: 295 YLAYLPLAHVLELV-AENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMAS 353
Y P+ HVL + EN+ S I G S K+K GT V R
Sbjct: 127 YHEEFPVTHVLSIADPENMAEEAASMIQKGY------QSFKMKVGTNVKEDVKR------ 174
Query: 354 VPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWF 396
+ A+ +RV + + +VD G L R L +N W
Sbjct: 175 IEAVRERVGNDIAIRVDVNQGWKNSANTLTALRSLGHLNIDWI 217
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,056,785
Number of Sequences: 62578
Number of extensions: 874457
Number of successful extensions: 2044
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1844
Number of HSP's gapped (non-prelim): 135
length of query: 672
length of database: 14,973,337
effective HSP length: 105
effective length of query: 567
effective length of database: 8,402,647
effective search space: 4764300849
effective search space used: 4764300849
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)