Query 005874
Match_columns 672
No_of_seqs 253 out of 2567
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 09:46:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005874.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005874hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mdb_A 2,3-dihydroxybenzoate-A 100.0 6.6E-77 2.3E-81 658.9 43.5 498 57-672 24-538 (539)
2 3g7s_A Long-chain-fatty-acid-- 100.0 8.3E-77 2.8E-81 660.0 41.2 512 57-666 18-543 (549)
3 3ni2_A 4-coumarate:COA ligase; 100.0 1.6E-76 5.5E-81 655.7 42.3 501 55-665 19-535 (536)
4 1v25_A Long-chain-fatty-acid-C 100.0 1.2E-76 4E-81 657.3 39.4 502 57-668 17-539 (541)
5 2d1s_A Luciferase, luciferin 4 100.0 1.6E-76 5.5E-81 656.8 39.6 508 55-670 22-548 (548)
6 3etc_A AMP-binding protein; ad 100.0 1.3E-75 4.4E-80 652.7 45.1 506 56-666 54-580 (580)
7 3rix_A Luciferase, luciferin 4 100.0 3.5E-76 1.2E-80 655.2 36.6 511 57-669 19-545 (550)
8 3r44_A Fatty acyl COA syntheta 100.0 1.6E-75 5.4E-80 644.6 41.3 495 55-668 13-516 (517)
9 4fuq_A Malonyl COA synthetase; 100.0 1.3E-75 4.5E-80 643.0 40.0 490 62-665 4-500 (503)
10 1t5h_X 4-chlorobenzoyl COA lig 100.0 4.7E-75 1.6E-79 639.4 43.7 486 57-664 1-503 (504)
11 3o83_A Peptide arylation enzym 100.0 1.3E-75 4.3E-80 649.4 37.6 499 55-666 27-541 (544)
12 3c5e_A Acyl-coenzyme A synthet 100.0 4.8E-74 1.6E-78 639.2 44.7 501 57-665 37-562 (570)
13 1pg4_A Acetyl-COA synthetase; 100.0 1.5E-73 5.2E-78 644.8 48.5 526 57-668 75-624 (652)
14 3ivr_A Putative long-chain-fat 100.0 1E-74 3.6E-79 637.7 36.3 489 57-666 5-502 (509)
15 1ry2_A Acetyl-coenzyme A synth 100.0 1.5E-73 5.3E-78 644.9 42.9 530 57-669 81-641 (663)
16 1amu_A GRSA, gramicidin synthe 100.0 7.2E-74 2.5E-78 636.8 39.3 485 54-663 35-527 (563)
17 3e7w_A D-alanine--poly(phospho 100.0 4.5E-73 1.5E-77 624.7 44.6 486 58-666 1-504 (511)
18 4gr5_A Non-ribosomal peptide s 100.0 3.4E-74 1.2E-78 641.6 33.8 480 55-662 72-568 (570)
19 3fce_A D-alanine--poly(phospho 100.0 1.7E-73 6E-78 628.4 37.0 484 58-666 1-505 (512)
20 2v7b_A Benzoate-coenzyme A lig 100.0 6.7E-73 2.3E-77 626.3 41.6 495 57-661 23-528 (529)
21 3rg2_A Enterobactin synthase c 100.0 1.4E-72 4.8E-77 634.2 44.7 499 55-669 24-538 (617)
22 3l8c_A D-alanine--poly(phospho 100.0 7E-73 2.4E-77 625.3 39.4 492 57-666 3-513 (521)
23 4dg8_A PA1221; ANL superfamily 100.0 1.3E-72 4.5E-77 631.8 39.7 475 55-665 24-513 (620)
24 3tsy_A Fusion protein 4-coumar 100.0 4.9E-73 1.7E-77 670.6 34.8 515 53-671 56-588 (979)
25 3ipl_A 2-succinylbenzoate--COA 100.0 3.8E-72 1.3E-76 616.3 32.8 488 59-666 2-498 (501)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 3E-72 1E-76 616.2 29.4 473 56-661 20-504 (505)
27 3gqw_A Fatty acid AMP ligase; 100.0 1.7E-69 6E-74 606.4 41.9 500 53-671 16-569 (576)
28 3kxw_A Saframycin MX1 syntheta 100.0 6.7E-70 2.3E-74 611.2 33.5 502 55-665 8-567 (590)
29 2vsq_A Surfactin synthetase su 100.0 4.4E-69 1.5E-73 652.3 41.4 485 58-663 464-958 (1304)
30 3ite_A SIDN siderophore synthe 100.0 4.3E-69 1.5E-73 600.3 30.3 505 54-666 16-544 (562)
31 3t5a_A Long-chain-fatty-acid-- 100.0 5.6E-58 1.9E-62 501.4 33.7 401 57-556 23-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 1.5E-51 5E-56 430.5 25.7 312 249-667 36-356 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 3.4E-45 1.2E-49 394.5 19.1 322 246-657 81-429 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 6.6E-45 2.3E-49 393.1 20.4 343 227-660 72-439 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 3.1E-44 1E-48 387.2 21.9 340 227-658 70-432 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 2.7E-28 9.2E-33 256.5 16.0 247 247-567 88-368 (369)
37 3lax_A Phenylacetate-coenzyme 99.0 9E-11 3.1E-15 98.9 1.5 93 555-657 1-102 (109)
38 3gxs_A Phenylacetate-coenzyme 99.0 3.4E-10 1.1E-14 95.2 4.9 90 555-657 1-102 (109)
39 4b2g_A GH3-1 auxin conjugating 98.6 2.3E-07 7.8E-12 100.2 14.2 148 418-592 300-478 (609)
40 4eql_A 4-substituted benzoates 98.6 3.1E-07 1.1E-11 99.0 13.2 136 418-580 295-446 (581)
41 4epl_A Jasmonic acid-amido syn 98.5 1.4E-06 4.9E-11 93.6 14.2 162 417-604 299-487 (581)
42 2y4o_A Phenylacetate-coenzyme 92.7 1.4 4.8E-05 46.1 14.3 112 101-213 104-225 (443)
43 2y27_A Phenylacetate-coenzyme 92.0 1.7 5.7E-05 45.4 13.8 109 104-213 107-223 (437)
44 3qov_A Phenylacetate-coenzyme 91.6 1.5 5.1E-05 45.8 12.9 109 104-213 103-219 (436)
45 3ipl_A 2-succinylbenzoate--COA 81.2 24 0.00082 37.1 15.1 103 105-211 181-285 (501)
46 2d1s_A Luciferase, luciferin 4 80.9 14 0.00046 39.7 13.1 107 104-212 209-321 (548)
47 1mdb_A 2,3-dihydroxybenzoate-A 78.7 33 0.0011 36.5 15.3 106 104-213 199-311 (539)
48 3hgu_A EHPF; phenazine, antibi 74.3 13 0.00045 37.3 10.0 88 105-194 109-221 (369)
49 3r44_A Fatty acyl COA syntheta 74.2 35 0.0012 36.0 13.9 104 105-213 188-297 (517)
50 3o83_A Peptide arylation enzym 73.0 51 0.0017 35.1 14.9 106 104-213 208-320 (544)
51 1t5h_X 4-chlorobenzoyl COA lig 71.8 22 0.00077 37.4 11.5 104 105-212 171-284 (504)
52 4gs5_A Acyl-COA synthetase (AM 71.5 26 0.00091 35.0 11.5 120 71-212 35-160 (358)
53 3e7w_A D-alanine--poly(phospho 71.1 40 0.0014 35.5 13.4 105 105-212 161-272 (511)
54 3fce_A D-alanine--poly(phospho 70.0 27 0.00091 36.9 11.7 105 105-212 162-273 (512)
55 3rg2_A Enterobactin synthase c 68.2 74 0.0025 34.4 15.0 106 104-213 201-315 (617)
56 1v25_A Long-chain-fatty-acid-C 68.0 29 0.00098 37.0 11.4 107 105-212 194-305 (541)
57 1pg4_A Acetyl-COA synthetase; 67.5 35 0.0012 37.4 12.2 111 101-213 268-391 (652)
58 3c5e_A Acyl-coenzyme A synthet 65.8 52 0.0018 35.3 13.0 106 105-213 224-335 (570)
59 3ni2_A 4-coumarate:COA ligase; 65.4 31 0.0011 36.6 11.1 112 101-213 190-310 (536)
60 3rix_A Luciferase, luciferin 4 64.2 39 0.0013 36.0 11.6 107 105-212 208-319 (550)
61 3ivr_A Putative long-chain-fat 63.4 74 0.0025 33.3 13.5 99 105-208 178-280 (509)
62 3g7s_A Long-chain-fatty-acid-- 62.6 71 0.0024 33.9 13.3 104 105-212 198-308 (549)
63 1ry2_A Acetyl-coenzyme A synth 62.6 39 0.0013 37.1 11.4 110 101-212 274-396 (663)
64 3kxw_A Saframycin MX1 syntheta 61.8 50 0.0017 35.4 12.0 106 104-212 184-301 (590)
65 4dg8_A PA1221; ANL superfamily 59.4 47 0.0016 36.1 11.2 105 105-213 182-289 (620)
66 3ite_A SIDN siderophore synthe 58.3 41 0.0014 35.9 10.4 108 105-212 193-306 (562)
67 4gr5_A Non-ribosomal peptide s 57.6 44 0.0015 35.8 10.6 105 105-213 232-339 (570)
68 1amu_A GRSA, gramicidin synthe 55.1 46 0.0016 35.6 10.2 103 105-212 200-305 (563)
69 3etc_A AMP-binding protein; ad 54.6 63 0.0022 34.7 11.2 88 126-213 261-354 (580)
70 3tbh_A O-acetyl serine sulfhyd 49.2 60 0.002 32.1 9.1 67 121-187 60-127 (334)
71 3nyq_A Malonyl-COA ligase; A/B 46.8 1.1E+02 0.0038 32.0 11.4 85 105-194 173-259 (505)
72 2cvi_A 75AA long hypothetical 46.8 86 0.003 23.3 8.3 61 571-637 15-75 (83)
73 3tsy_A Fusion protein 4-coumar 46.5 71 0.0024 36.9 10.5 109 104-213 242-357 (979)
74 3gqw_A Fatty acid AMP ligase; 44.9 99 0.0034 32.9 10.8 107 104-212 193-311 (576)
75 2v7b_A Benzoate-coenzyme A lig 42.3 65 0.0022 34.0 8.7 104 105-211 201-311 (529)
76 3t5a_A Long-chain-fatty-acid-- 37.0 1.2E+02 0.0041 31.2 9.7 105 104-212 200-323 (480)
77 3l8c_A D-alanine--poly(phospho 36.7 2.7E+02 0.0093 28.9 12.6 107 104-211 162-275 (521)
78 3vc3_A Beta-cyanoalnine syntha 36.5 1.3E+02 0.0044 29.7 9.3 65 123-187 77-142 (344)
79 4fuq_A Malonyl COA synthetase; 32.4 2.1E+02 0.0072 29.7 10.7 102 104-211 172-279 (503)
80 2vsq_A Surfactin synthetase su 31.3 1.2E+02 0.0042 36.3 9.5 123 71-213 605-733 (1304)
81 1z7w_A Cysteine synthase; tran 29.1 2E+02 0.0067 28.0 9.1 65 123-187 57-122 (322)
82 4aec_A Cysteine synthase, mito 28.1 2E+02 0.0068 29.4 9.1 64 123-186 165-229 (430)
83 2zbc_A 83AA long hypothetical 27.8 1.5E+02 0.0052 21.6 6.3 42 572-614 16-57 (83)
84 4eez_A Alcohol dehydrogenase 1 27.5 2.4E+02 0.0082 27.5 9.6 77 107-186 137-216 (348)
85 2q3b_A Cysteine synthase A; py 27.3 2.3E+02 0.0079 27.3 9.2 66 121-187 56-122 (313)
86 3nra_A Aspartate aminotransfer 24.4 4.2E+02 0.014 26.0 11.0 52 128-183 123-184 (407)
87 2pqm_A Cysteine synthase; OASS 24.2 2.3E+02 0.0079 27.8 8.6 64 123-187 69-133 (343)
88 4h1h_A LMO1638 protein; MCCF-l 23.9 2.1E+02 0.007 28.0 8.1 60 127-186 8-86 (327)
89 2egu_A Cysteine synthase; O-ac 23.8 2.4E+02 0.0084 27.0 8.6 65 122-187 55-120 (308)
90 3ju7_A Putative PLP-dependent 23.7 1.9E+02 0.0064 28.8 8.0 60 123-185 70-136 (377)
91 3sr3_A Microcin immunity prote 23.0 1.2E+02 0.0042 29.8 6.2 60 127-186 9-87 (336)
92 1ve1_A O-acetylserine sulfhydr 22.3 3.4E+02 0.011 25.9 9.3 65 122-187 50-117 (304)
93 3tla_A MCCF; serine protease, 20.7 1.4E+02 0.0047 29.9 6.1 60 127-186 39-117 (371)
94 3dwg_A Cysteine synthase B; su 20.4 3.3E+02 0.011 26.4 8.8 64 123-187 64-128 (325)
No 1
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=6.6e-77 Score=658.94 Aligned_cols=498 Identities=22% Similarity=0.302 Sum_probs=412.0
Q ss_pred CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 005874 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (672)
Q Consensus 57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i 136 (672)
..|+.++|+++++++||++|+.+ .+ +.+||+||.++++++|++|+++|+++||+|+|
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~------------~~-----------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i 80 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITC------------GN-----------THWSYRELDTRADRLAAGFQKLGIQQKDRVVV 80 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred CCCHHHHHHHHHHHCCCCEEEEe------------CC-----------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 47999999999999999999986 33 37999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccch-----HHHHhhhcCCCCccEEEEecCC
Q 005874 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL-----KKLVDLSGQLDTVKHVICMDAN 211 (672)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~~~~~~l~~ii~~~~~ 211 (672)
+++|++++++++|||+++|+++||+++.++.+++.+++++++++++|++++.. ..+......++.++.++..++.
T Consensus 81 ~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (539)
T 1mdb_A 81 QLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA 160 (539)
T ss_dssp CCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCC
T ss_pred EcCCcHHHHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCc
Confidence 99999999999999999999999999999999999999999999999987642 2333333445566666654432
Q ss_pred CcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCC
Q 005874 212 IPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGS 291 (672)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~ 291 (672)
.. +.++.... ..+.......++++++|+|||||||.||||++||+++++.+......+ ++++
T Consensus 161 ~~----------------~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-~~~~ 222 (539)
T 1mdb_A 161 EE----------------FLPLEDLH-TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-WLDH 222 (539)
T ss_dssp TT----------------SEEGGGCC-CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCCT
T ss_pred cc----------------hhhhhhcc-ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-CCCC
Confidence 10 11111111 111122345679999999999999999999999999999988888777 8999
Q ss_pred CcEEEEecChHhHHHHHH--HHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHH
Q 005874 292 KDVYLAYLPLAHVLELVA--ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVR 366 (672)
Q Consensus 292 ~d~~l~~~pl~h~~~~~~--~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~ 366 (672)
+|++++++|++|.+++.. .+.++..|+++++ +++..+.+. ++++++|+++++|+++..+.+...
T Consensus 223 ~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~ 291 (539)
T 1mdb_A 223 STVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPL-----------IEREKVTITALVPPLAMVWMDAAS 291 (539)
T ss_dssp TCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHH-----------HHHHTCSEEEECHHHHHHHHHHHH
T ss_pred CCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHH-----------HHHcCCeEEEccHHHHHHHHhCcc
Confidence 999999999999999874 7788999999999 344444444 999999999999999999887533
Q ss_pred HhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCC
Q 005874 367 KKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGA 446 (672)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~ 446 (672)
... ...++||.+++||+++++++.+.+++.+++
T Consensus 292 ~~~-----------------------------------------------~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~ 324 (539)
T 1mdb_A 292 SRR-----------------------------------------------DDLSSLQVLQVGGAKFSAEAARRVKAVFGC 324 (539)
T ss_dssp HCC-----------------------------------------------CCCTTCCEEEEESSCCCHHHHTTHHHHTCS
T ss_pred ccC-----------------------------------------------CCccceeEEEEcCCCCCHHHHHHHHHHhCC
Confidence 211 112489999999999999999999998999
Q ss_pred ceecccCcccccccccccCCC-CCCCCccCCCcCC-eEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhh
Q 005874 447 PIGQGYGLTETCAGGTFSEVD-DSSVGRVGAPLPC-SFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK 524 (672)
Q Consensus 447 ~v~~~YG~TE~~~~~~~~~~~-~~~~~~~G~p~~~-~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~ 524 (672)
+++++||+||++...+..... ....+++|.|+++ .+++|+| +++..+ +.|+.|||+|+||++++|||++|+.|+
T Consensus 325 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~---~~g~~GEl~v~g~~v~~GY~~~~~~t~ 400 (539)
T 1mdb_A 325 TLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWD-DHDRDV---KPGETGHLLTRGPYTIRGYYKAEEHNA 400 (539)
T ss_dssp EEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEEC-TTSCBC---CTTCCEEEEEECTTSCSSCTTCHHHHH
T ss_pred cEEEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEEC-CCCCCC---cCCCcceEEeeCcccchhhcCChhhhh
Confidence 999999999965433321111 1234689999975 5899999 666654 578999999999999999999999999
Q ss_pred hhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEE
Q 005874 525 EVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVAL 601 (672)
Q Consensus 525 ~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~ 601 (672)
+.|. .+|||+|||+|++|+||.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+
T Consensus 401 ~~f~----~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~ 475 (539)
T 1mdb_A 401 ASFT----EDGFYRTGDIVRLTRDGYIVVEGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVF 475 (539)
T ss_dssp HHBC----TTSCEEEEEEEEECTTSCEEEEEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEE
T ss_pred hhcc----CCCCeecCceEEECCCCcEEEeccccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEE
Confidence 9997 7899999999999999999999999999996 6999999999999999999999999997655 368999
Q ss_pred EEcChhHH-HHHHHHcChhhhhcC-CCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHHHHhhhC
Q 005874 602 VVASQPAV-EEWAAKQGIVGKNAR-LDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLYE 672 (672)
Q Consensus 602 v~~~~~~~-~~~~~~~~~~~~~~~-L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~i~~ly~ 672 (672)
|++++... .+... ..++++ |+.|++|+.|+++++.| +|++||++|++|++.|++.|+++|+
T Consensus 476 vv~~~~~~~~~~l~----~~l~~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~i~~~y~ 538 (539)
T 1mdb_A 476 IIPRDEAPKAAELK----AFLRERGLAAYKIPDRVEFVESFP------QTGVGKVSKKALREAISEKLLAGFK 538 (539)
T ss_dssp EEESSSCCCHHHHH----HHHHHTTCCGGGSCSEEEECSSCC------BCTTSCBCHHHHHHHHHHHHHTC--
T ss_pred EEECCCCCCHHHHH----HHHHhCCCCcccCCCEEEEeccCC------CCCCcCEeHHHHHHHHHHHHhcccc
Confidence 99874321 11111 455565 99999999999999987 9999999999999999999999995
No 2
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=8.3e-77 Score=660.01 Aligned_cols=512 Identities=23% Similarity=0.311 Sum_probs=390.8
Q ss_pred CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 005874 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (672)
Q Consensus 57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i 136 (672)
..|+.++|+++++++||++|+.+.+ +. +..+..+++||+||.++++++|.+|.++|+++||+|+|
T Consensus 18 ~~~l~~~l~~~a~~~p~~~A~~~~~-----------~~----~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i 82 (549)
T 3g7s_A 18 KISLADRIDAAAEKFGEKTAIISAE-----------PK----FPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGV 82 (549)
T ss_dssp CCCTTHHHHHHHHHHTTSEEEEEES-----------SC----CCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred CCCHHHHHHHHHHhCCCceEEEeCC-----------Cc----ccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 4799999999999999999998742 11 00223458999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcccc
Q 005874 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216 (672)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~ 216 (672)
+++|++++++++|||+++|+++||+++.++.+++.+++++++++++|++....+.+.......+ ++.++..+..
T Consensus 83 ~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~----- 156 (549)
T 3g7s_A 83 CIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTG-VERVFVVGGE----- 156 (549)
T ss_dssp ECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSC-CCEEEEETCS-----
T ss_pred ECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCC-CcEEEEeCCC-----
Confidence 9999999999999999999999999999999999999999999999999998887777665554 5555554422
Q ss_pred cccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEE
Q 005874 217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYL 296 (672)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l 296 (672)
..++.++...+...........++++++|+|||||||.||||++||+++++.+..+...+ ++.++|+++
T Consensus 157 ----------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~ 225 (549)
T 3g7s_A 157 ----------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-GLSHMDTIV 225 (549)
T ss_dssp ----------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-CCCTTCEEE
T ss_pred ----------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-CCCCCCEEE
Confidence 123555555443322222222348999999999999999999999999999998888888 899999999
Q ss_pred EecChHhHHHHHHHHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcC
Q 005874 297 AYLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKG 373 (672)
Q Consensus 297 ~~~pl~h~~~~~~~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~ 373 (672)
+.+|++|.+++...+.++..|+++++ +++..+.+. ++++++|+++++|+++..|.+........
T Consensus 226 ~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-- 292 (549)
T 3g7s_A 226 GCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAEN-----------IEKYKGTFSWAVPPALNVLVNTLESSNKT-- 292 (549)
T ss_dssp CCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHH-----------HHHTTCCEEEECHHHHHHHHHHHHHSCCC--
T ss_pred EeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHH-----------HHHhCCeEEEeCCHHHHHHHhhhhhhccc--
Confidence 99999999998888888999999998 455555555 99999999999999999998754332100
Q ss_pred chhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHH----hC---C
Q 005874 374 GLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC----LG---A 446 (672)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~----~~---~ 446 (672)
...+++|.+++||+++++++.+.+.+. ++ +
T Consensus 293 -------------------------------------------~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~ 329 (549)
T 3g7s_A 293 -------------------------------------------YDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRL 329 (549)
T ss_dssp -------------------------------------------CCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTC
T ss_pred -------------------------------------------CCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccc
Confidence 112489999999999999999999887 56 8
Q ss_pred ceecccCcccccccccccCCCC-CCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhh
Q 005874 447 PIGQGYGLTETCAGGTFSEVDD-SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKE 525 (672)
Q Consensus 447 ~v~~~YG~TE~~~~~~~~~~~~-~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~ 525 (672)
++++.||+||++++++...... ...+++|.|+++++++|+|.+++..+ +.|+.|||+|+||+++.|||++|+.|++
T Consensus 330 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~---~~g~~GEl~v~g~~v~~GY~~~~~~t~~ 406 (549)
T 3g7s_A 330 RHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGREL---GVGESGEIVIRGPNIFKGYWKREKENQE 406 (549)
T ss_dssp EEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEE---CTTCCEEEEEESTTSCSEETTCTTGGGT
T ss_pred cccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCC---CCCCceEEEEECcchhhhhCCChhhhhh
Confidence 8999999999998776654433 45688999999999999996666665 4789999999999999999999999999
Q ss_pred hcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEE
Q 005874 526 VYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALV 602 (672)
Q Consensus 526 ~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v 602 (672)
.|..+.++.+||+|||+|++|+||.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|
T Consensus 407 ~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~v 485 (549)
T 3g7s_A 407 CWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFI 485 (549)
T ss_dssp SEEECTTCCEEEEEEEEEEECTTSCEEEEEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEE
T ss_pred hhhccCCCCceEccCcEEEEcCCceEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEE
Confidence 98644445569999999999999999999999999998 6999999999999999999999999998765 3588999
Q ss_pred EcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHH
Q 005874 603 VASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADD 666 (672)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~ 666 (672)
+++++.......+....+++++|+.|++|+.|+++++.| +|++||++|++|++++++.
T Consensus 486 v~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~~ 543 (549)
T 3g7s_A 486 VLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELP------RTASGKLLRRLLREKEAEG 543 (549)
T ss_dssp EECSTTTTSCCHHHHHHHHHTTCC-----CCCCEEEECC-------------------------
T ss_pred EECCCccCcCCHHHHHHHHHHhccCcccceEEEEeccCC------CCCCcCEeHHHHHHHhhcc
Confidence 987652110001111166779999999999999999988 9999999999999998763
No 3
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=1.6e-76 Score=655.74 Aligned_cols=501 Identities=24% Similarity=0.309 Sum_probs=413.6
Q ss_pred CCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 005874 55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV 134 (672)
Q Consensus 55 ~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V 134 (672)
|...|+.++|.++++++||++|+.+.+ +|+ .+||+||.++++++|++|+++|+++||+|
T Consensus 19 p~~~~l~~~l~~~a~~~p~~~a~~~~~----------~~~-----------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V 77 (536)
T 3ni2_A 19 PKNLPLHSYVLENLSNHSSKPCLINGA----------NGD-----------VYTYADVELTARRVASGLNKIGIQQGDVI 77 (536)
T ss_dssp CSSCCHHHHHTTTGGGSTTSEEEEETT----------TCC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred CCCCcHHHHHHHHhhcCCCceEEEECC----------CCC-----------EEEHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 455899999999999999999998621 233 79999999999999999999999999999
Q ss_pred EEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcc
Q 005874 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS 214 (672)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~ 214 (672)
+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++....+.+.+..... .+ .++.++....
T Consensus 78 ~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~- 154 (536)
T 3ni2_A 78 MLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES-DV-KVMCVDSAPD- 154 (536)
T ss_dssp EEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH-TC-EEEESSCCCT-
T ss_pred EEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc-Cc-eEEEecCCCC-
Confidence 99999999999999999999999999999999999999999999999999998877766654322 22 2444433211
Q ss_pred cccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhc---CCCCC
Q 005874 215 AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV---PDLGS 291 (672)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~---~~~~~ 291 (672)
....++++....... .+.....++++++|+|||||||.||||++||+++++.+....... ..+.+
T Consensus 155 -----------~~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~ 222 (536)
T 3ni2_A 155 -----------GCLHFSELTQADENE-APQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHS 222 (536)
T ss_dssp -----------TCEETHHHHTSCGGG-CCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCT
T ss_pred -----------CccCHHHHhhccccc-cccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCC
Confidence 123456665433222 233456789999999999999999999999999998877665421 16789
Q ss_pred CcEEEEecChHhHHHHHH-HHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHH
Q 005874 292 KDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRK 367 (672)
Q Consensus 292 ~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~ 367 (672)
+|++++.+|++|.+++.. .+.++..|+++++ +++..+.+. ++++++|++.++|+++..+.+....
T Consensus 223 ~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~ 291 (536)
T 3ni2_A 223 EDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGL-----------IEKYKVSIAPVVPPVMMSIAKSPDL 291 (536)
T ss_dssp TCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHH-----------HHHHTCCEEEECHHHHHHHHTCSCG
T ss_pred CCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHH-----------HHHhCCeEEEccHHHHHHHHhCccc
Confidence 999999999999999866 6778999999998 344444444 9999999999999999988653111
Q ss_pred hhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CC
Q 005874 368 KVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GA 446 (672)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~ 446 (672)
. ....++||.+++||+++++++.+.+++.+ ++
T Consensus 292 ~-----------------------------------------------~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~ 324 (536)
T 3ni2_A 292 D-----------------------------------------------KHDLSSLRMIKSGGAPLGKELEDTVRAKFPQA 324 (536)
T ss_dssp G-----------------------------------------------GSCCTTCCEEEEESSCCCHHHHHHHHHHCTTS
T ss_pred c-----------------------------------------------cCCCccceEEEECCCCCCHHHHHHHHHHCCCC
Confidence 0 11224899999999999999999999988 89
Q ss_pred ceecccCccccccccccc-----CCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCch
Q 005874 447 PIGQGYGLTETCAGGTFS-----EVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEE 521 (672)
Q Consensus 447 ~v~~~YG~TE~~~~~~~~-----~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~ 521 (672)
+++++||+||++++++.. .......+++|.|+++++++|+|.+++..+ +.|+.|||+|+|++++.||+++|+
T Consensus 325 ~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~---~~g~~GEl~v~g~~v~~GY~~~p~ 401 (536)
T 3ni2_A 325 RLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASL---PRNQPGEICIRGDQIMKGYLNDPE 401 (536)
T ss_dssp EEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBC---CTTCCEEEEEESTTSCSEETTCHH
T ss_pred CccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCC---CCCCccEEEEeCcccchhhcCChh
Confidence 999999999998765543 122345688999999999999995555554 588999999999999999999999
Q ss_pred hhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeE
Q 005874 522 KTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYC 598 (672)
Q Consensus 522 ~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~ 598 (672)
.|++.|+ .+|||+|||+|++|+||.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.+
T Consensus 402 ~t~~~~~----~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~ 476 (536)
T 3ni2_A 402 ATSRTID----KEGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVP 476 (536)
T ss_dssp HHHHHBC----TTSCEEEEEEEEECTTSCEEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEE
T ss_pred HHHhhcc----CCCceEcccEEEEcCCceEEEEecccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCcee
Confidence 9999998 8899999999999999999999999999998 6999999999999999999999999996544 458
Q ss_pred EEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHH
Q 005874 599 VALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFAD 665 (672)
Q Consensus 599 va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~ 665 (672)
+|+|++.++...+..+.+ ..++++|+.|++|+.|+++++.| +|++||++|++|+++|+.
T Consensus 477 ~a~vv~~~~~~~~~~~l~--~~l~~~l~~~~~p~~i~~v~~lP------~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 477 VAFVVKSEKSQATEDEIK--QYISKQVIFYKRIKRVFFIEAIP------KAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp EEEEEECTTCCCCHHHHH--HHHHTTSCGGGCCSEEEECSCCC------BCTTSCBCHHHHHTC---
T ss_pred EEEEEecCCCCCCHHHHH--HHHHHhccCCccccEEEEEecCC------CCCCCCeeHHHHHHHhcc
Confidence 999998765322111111 66778999999999999999988 999999999999988764
No 4
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=1.2e-76 Score=657.28 Aligned_cols=502 Identities=24% Similarity=0.319 Sum_probs=386.1
Q ss_pred CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 005874 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (672)
Q Consensus 57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i 136 (672)
..|+.++|+++++++||++|+.+.+ + +..+++||+||.++++++|.+|+++|+++||+|++
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~~----------~---------~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i 77 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRLH----------T---------GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVAT 77 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEECT----------T---------SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred CCCHHHHHHHHHHhCCCceEEEEec----------C---------CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 4689999999999999999998631 1 13358999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcccc
Q 005874 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216 (672)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~ 216 (672)
+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+..+.+......++.++.++.++.....
T Consensus 78 ~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 155 (541)
T 1v25_A 78 LGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE-- 155 (541)
T ss_dssp ECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCT--
T ss_pred EcCCcHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCc--
Confidence 999999999999999999999999999999999999999999999999998888777776667777777776543211
Q ss_pred cccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHH--HhhcCCCCCCcE
Q 005874 217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV--MTIVPDLGSKDV 294 (672)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~~d~ 294 (672)
...+++++...... .....++++++|+|||||||.||||++||+++++..... ...+ .++++|+
T Consensus 156 ---------~~~~~~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~~d~ 221 (541)
T 1v25_A 156 ---------GYLAYEEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-ALSEKDV 221 (541)
T ss_dssp ---------TCEEHHHHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-CCCTTCE
T ss_pred ---------ccccHHHHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-cCCCCCE
Confidence 12345555432211 133457899999999999999999999999998776653 2334 7889999
Q ss_pred EEEecChHhHHHHHHHHHHhHhCcEEeeC----CcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhh
Q 005874 295 YLAYLPLAHVLELVAENLIAGVGSAIGYG----TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVD 370 (672)
Q Consensus 295 ~l~~~pl~h~~~~~~~~~~l~~G~~i~~~----~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~ 370 (672)
+++++|++|.+++...+.++..|+++++. ++..+.+. ++++++|+++++|+++..|.+......
T Consensus 222 ~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~- 289 (541)
T 1v25_A 222 VLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVEL-----------FDGEGVTFTAGVPTVWLALADYLESTG- 289 (541)
T ss_dssp EEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHH-----------HHHTTCCEEEECHHHHHHHHHHHHHHT-
T ss_pred EEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHH-----------HHhcCeeEEecchHHHHHHHhhhhccC-
Confidence 99999999999987778889999999983 34444444 999999999999999999987543221
Q ss_pred hcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceec
Q 005874 371 AKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQ 450 (672)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~ 450 (672)
...++||.+++||+++++++.+.+ ..+++++++
T Consensus 290 ----------------------------------------------~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~ 322 (541)
T 1v25_A 290 ----------------------------------------------HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQ 322 (541)
T ss_dssp ----------------------------------------------CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEE
T ss_pred ----------------------------------------------CcchhccEEEECCCCCCHHHHHHH-HHhCCceee
Confidence 112489999999999999999999 567999999
Q ss_pred ccCcccccccccccCCCC-----------CCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCC
Q 005874 451 GYGLTETCAGGTFSEVDD-----------SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKN 519 (672)
Q Consensus 451 ~YG~TE~~~~~~~~~~~~-----------~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~ 519 (672)
+||+||+++.++...... ...+++|.|+|+++++|+| +++..++ .+.++.|||+|+||+++.|||++
T Consensus 323 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~-~~~~~~GEl~v~g~~v~~GY~~~ 400 (541)
T 1v25_A 323 GYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVP-KDGKALGEVQLKGPWITGGYYGN 400 (541)
T ss_dssp EEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCC-SSSCCCEEEEEESTTSBSSCBTC
T ss_pred cccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCC-CCCCcceEEEEeCcchhccccCC
Confidence 999999987766543321 1247899999999999999 7776654 11236899999999999999999
Q ss_pred chhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---C
Q 005874 520 EEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---S 596 (672)
Q Consensus 520 ~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~ 596 (672)
|+.|++.|. .+|||+|||+|++|+||.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +
T Consensus 401 p~~t~~~f~----~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~ 475 (541)
T 1v25_A 401 EEATRSALT----PDGFFRTGDIAVWDEEGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQE 475 (541)
T ss_dssp HHHHHTTBC----TTSCEEEEEEEEECTTCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSE
T ss_pred hhhhhhhcc----CCCCeEcCCEEEEcCCceEEEeecccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCc
Confidence 999999997 6899999999999999999999999999997 6999999999999999999999999997665 4
Q ss_pred eEEEEEEcChhHHHHHHHHcChhhhhc-CCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHHHH
Q 005874 597 YCVALVVASQPAVEEWAAKQGIVGKNA-RLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLA 668 (672)
Q Consensus 597 ~~va~v~~~~~~~~~~~~~~~~~~~~~-~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~i~ 668 (672)
.++|+|+++... .+ .+.....+.+ +|+.|++|+.++++++.| +|++||++|++|++.|++.++
T Consensus 476 ~~~a~vv~~~~~-~~--~~~l~~~~~~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~~~ 539 (541)
T 1v25_A 476 RPLAVVVPRGEK-PT--PEELNEHLLKAGFAKWQLPDAYVFAEEIP------RTSAGKFLKRALREQYKNYYG 539 (541)
T ss_dssp EEEECC----------------------CCCTTTSCSBC--------------------CCTTHHHHSTTSSC
T ss_pred eEEEEEEECCCC-CC--HHHHHHHHHhccCccccCCcEEEEeCCCC------CCCccCeeHHHHHHHHHHhhC
Confidence 689999886221 11 1111245556 899999999999999887 999999999999999876543
No 5
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=1.6e-76 Score=656.82 Aligned_cols=508 Identities=23% Similarity=0.288 Sum_probs=417.6
Q ss_pred CCCCCHHH-HHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCE
Q 005874 55 EGISTLAE-LFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEER 133 (672)
Q Consensus 55 ~~~~tl~~-~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~ 133 (672)
+...|+.+ ++.++++++ |++|+.+.. ++ +.+||+||.++++++|.+|++.|+++||+
T Consensus 22 p~~~~l~~~~l~~~~~~~-~~~A~~~~~----------~~-----------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~ 79 (548)
T 2d1s_A 22 EGSAGTQLRKYMERYAKL-GAIAFTNAV----------TG-----------VDYSYAEYLEKSCCLGKALQNYGLVVDGR 79 (548)
T ss_dssp SSCHHHHHHHHHHHHHHH-TCEEEEETT----------TC-----------CEEEHHHHHHHHHHHHHHHHHHTCCTTCE
T ss_pred CCcCcHHHHHHHhhhccc-CCceEEEcC----------CC-----------CEeeHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence 34458999 898999999 999998521 22 37999999999999999999999999999
Q ss_pred EEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCc
Q 005874 134 VAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIP 213 (672)
Q Consensus 134 V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~ 213 (672)
|+|+++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++.+..+.+......++....++.++....
T Consensus 80 V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (548)
T 2d1s_A 80 IALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVD 159 (548)
T ss_dssp EEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSC
T ss_pred EEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCccc
Confidence 99999999999999999999999999999999999999999999999999999887777665555554556666543211
Q ss_pred ccccccccCCCeEEEeHHHHHhcccCCCCCCCCC------CCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhh--
Q 005874 214 SAVSSVEQSGRWKITSFADVQILGRENPVDADYP------VSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI-- 285 (672)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~-- 285 (672)
. . ...+|+++.........+.... .++++++|+|||||||.||||++||+++++.+......
T Consensus 160 ~--------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~ 229 (548)
T 2d1s_A 160 Y--------R--GYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY 229 (548)
T ss_dssp B--------T--TBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTT
T ss_pred c--------c--ccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhh
Confidence 0 0 1124666654432110111111 23899999999999999999999999999988877665
Q ss_pred -cCCCCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHH
Q 005874 286 -VPDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDR 360 (672)
Q Consensus 286 -~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~ 360 (672)
+ .++++|++++++|++|.+++.. .+.++ .|+++++ +++..+.+. ++++++|+++++|+++..
T Consensus 230 ~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~ 296 (548)
T 2d1s_A 230 GN-QVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKT-----------LQDYKCTSVILVPTLFAI 296 (548)
T ss_dssp SC-CCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHH-----------HHHTTEEEEEECHHHHHH
T ss_pred cc-CCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHH-----------HHHcCCcEEEecHHHHHH
Confidence 4 7889999999999999999887 45556 9999998 345555555 999999999999999998
Q ss_pred HHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHH
Q 005874 361 VRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFI 440 (672)
Q Consensus 361 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~ 440 (672)
|.+..... ....++||.+++||+++++++.+.+
T Consensus 297 l~~~~~~~-----------------------------------------------~~~l~~lr~i~~gG~~l~~~~~~~~ 329 (548)
T 2d1s_A 297 LNKSELLN-----------------------------------------------KYDLSNLVEIASGGAPLSKEVGEAV 329 (548)
T ss_dssp HHHCSCGG-----------------------------------------------GSCCTTCCEEEECSSCCCHHHHHHH
T ss_pred HHhCcccc-----------------------------------------------cccccceeEEEEcCccCCHHHHHHH
Confidence 87521100 0122489999999999999999999
Q ss_pred HHHh-CCceecccCcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCC
Q 005874 441 NICL-GAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKN 519 (672)
Q Consensus 441 ~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~ 519 (672)
++.+ +++++++||+||++..++.........+++|.|+|+++++|+|++++..+ ++|+.|||+|+|++++.|||++
T Consensus 330 ~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~---~~g~~GEl~v~g~~v~~GY~~~ 406 (548)
T 2d1s_A 330 ARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSL---GPNRRGEVCVKGPMLMKGYVNN 406 (548)
T ss_dssp HHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTCCBEECTTCEEEEECTTTCCBC---CTTCCEEEEEESTTSCSEETTC
T ss_pred HHHcCCCceeeccccccccceeeecCcccCCCCCCCccCCCceEEEEeCCcCccC---CCCCCeEEEECCHHHhhhhcCC
Confidence 9988 68899999999998776665444456689999999999999995566554 4789999999999999999999
Q ss_pred chhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---C
Q 005874 520 EEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---S 596 (672)
Q Consensus 520 ~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~ 596 (672)
|+.|++.|+ .+|||+|||+|++|+||.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +
T Consensus 407 ~~~t~~~f~----~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~ 481 (548)
T 2d1s_A 407 PEATKELID----EEGWLHTGDIGYYDEEKHFFIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGE 481 (548)
T ss_dssp HHHHHHHBC----TTSCEEEEEEEEECTTCCEEEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEE
T ss_pred hHHhhhccc----CCcEEEccCEEEEcCCCeEEEeccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCe
Confidence 999999997 7899999999999999999999999999997 6999999999999999999999999998655 3
Q ss_pred eEEEEEEcChhHHHHHHHHcChhhhhcCCCCCccee-EEEEeecCCCCCCCccccccccChHHHHHHHHHHHHhh
Q 005874 597 YCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPA-KIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLARL 670 (672)
Q Consensus 597 ~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~-~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~i~~l 670 (672)
.++|+|+++++...+..+ ....++++|+.|++|+ .|+++++.| +|++||++|++|+++|++.|++|
T Consensus 482 ~~~a~vv~~~~~~~~~~~--l~~~~~~~l~~~~~p~~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~i~~~ 548 (548)
T 2d1s_A 482 LPGAVVVLESGKNMTEKE--VMDYVASQVSNAKRLRGGVRFVDEVP------KGLTGKIDGRAIREILKKPVAKM 548 (548)
T ss_dssp EEEEEEEECTTCCCCHHH--HHHHHHTTSCGGGSCTTCEEECSSCC------BCTTSCBCHHHHHHHHHSCC---
T ss_pred eeEEEEEEcCCCCCCHHH--HHHHHHHhccccccccccEEEccCCC------CCCcchhHHHHHHHHHhhhhhcC
Confidence 689999987653211111 1166778999999999 999999987 99999999999999999998876
No 6
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1.3e-75 Score=652.68 Aligned_cols=506 Identities=17% Similarity=0.179 Sum_probs=400.7
Q ss_pred CCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 005874 56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA 135 (672)
Q Consensus 56 ~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~ 135 (672)
.++..+++|+++|+++||++|+.+.+ + .|+.+.+||+||.++++++|++|+++|+++||+|+
T Consensus 54 ~~n~~~~~l~~~a~~~pd~~Al~~~~----------~--------~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~ 115 (580)
T 3etc_A 54 NFNFAYDVVDVYARDSPEKLAMIWCD----------D--------YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVM 115 (580)
T ss_dssp SCCHHHHTHHHHHHHCTTCEEEEEEE----------S--------SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEE
T ss_pred cchHHHHHHHHHHhhCCCCEEEEEEc----------C--------CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 34456699999999999999999742 1 12446899999999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccch--HHHHhhhcCCCCc-cEEEEecCCC
Q 005874 136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL--KKLVDLSGQLDTV-KHVICMDANI 212 (672)
Q Consensus 136 i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~l~~~~~~~~~l-~~ii~~~~~~ 212 (672)
|+++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++.+.. ..+.+....++.+ ..++.++...
T Consensus 116 l~~~~~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (580)
T 3etc_A 116 LTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDV 195 (580)
T ss_dssp EECTTCTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSC
T ss_pred EEcCCCHHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCcc
Confidence 999999999999999999999999999999999999999999999999988754 5555555444544 4555554331
Q ss_pred cccccccccCCCeEEEeHHHHHhcccCCCCCC---CCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCC
Q 005874 213 PSAVSSVEQSGRWKITSFADVQILGRENPVDA---DYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL 289 (672)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~ 289 (672)
. ..+.++.+...........+ ....++|+++|+|||||||.||||+++|.++++.+......+ .+
T Consensus 196 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-~~ 263 (580)
T 3etc_A 196 L-----------EGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-NV 263 (580)
T ss_dssp C-----------TTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-CC
T ss_pred c-----------cccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-CC
Confidence 1 11345666655443322212 246789999999999999999999999999988877666556 88
Q ss_pred CCCcEEEEecChHhHHHHHH-HHHHhHhCcEEeeC-----CcccccCchhhhhcccccccccccceeeecchHHHHHHHH
Q 005874 290 GSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYG-----TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRD 363 (672)
Q Consensus 290 ~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~-----~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~ 363 (672)
.++|++++.+|+.|..+++. .+.++..|+++++. ++..+.+. ++++++|+++++|++++.|.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~~l~~ 332 (580)
T 3etc_A 264 EDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEK-----------ASKYGVTTFCAPPTIYRFLIK 332 (580)
T ss_dssp CTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHH-----------HHHHTCCEEEECHHHHHHHHT
T ss_pred CCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH-----------HHHHCCeEEEccHHHHHHHHh
Confidence 99999999999999988876 67789999999873 33344444 999999999999999988865
Q ss_pred HHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHH
Q 005874 364 GVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC 443 (672)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~ 443 (672)
... .....++||.+++||+++++++.+.+++.
T Consensus 333 ~~~------------------------------------------------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~ 364 (580)
T 3etc_A 333 EDL------------------------------------------------SHYNFSTLKYAVVAGEPLNPEVFNRFLEF 364 (580)
T ss_dssp SCC---------------------------------------------------CCTTCCEEEECSSCCCHHHHHHHHHH
T ss_pred ccc------------------------------------------------ccCCCccceEEEEccCCCCHHHHHHHHHH
Confidence 200 01123589999999999999999999999
Q ss_pred hCCceecccCcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEcc-----CcccccccC
Q 005874 444 LGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAG-----PNVTVGYFK 518 (672)
Q Consensus 444 ~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g-----~~v~~gY~~ 518 (672)
+|++++++||+||+++.++.........+++|.|+|+++++|+| +++..+ ++|+.|||+|+| ++++.||++
T Consensus 365 ~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~g~~~---~~g~~GEl~v~~~~g~~~~~~~gY~~ 440 (580)
T 3etc_A 365 TGIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMD-RDGRLC---EVGEEGEIVINTMEGKPVGLFVHYGK 440 (580)
T ss_dssp HSCCCEEEECCTTSSCCEECCTTSCCCTTCCBEECTTCEEEEEC-TTSCBC---CTTCCEEEEEECTTCCCTTCCCEETT
T ss_pred hCCeEecccccccccceeecCCCCCCCCCccccCCCCCEEEEEC-CCCCCC---CCCCceEEEEecCCCCCCeeeccccC
Confidence 99999999999999877766665666779999999999999999 677654 588999999997 789999999
Q ss_pred CchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---
Q 005874 519 NEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH--- 595 (672)
Q Consensus 519 ~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~--- 595 (672)
+|+.|++.| .+|||+|||+|++|+||.|+|+||+||+||++ |++|+|.+||++|.+||+|.+|+|++.+++
T Consensus 441 ~p~~t~~~f-----~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~-G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g 514 (580)
T 3etc_A 441 DPERTEETW-----HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTS-GYKVGPFEVESALIQHPAVLECAITGVPDPVRG 514 (580)
T ss_dssp CHHHHHHHE-----ETTEEEEEEEEEECTTSCEEEEEESSSCEEET-TEEECHHHHHHHHTTSTTEEEEEEEEEEETTTE
T ss_pred CHhHHHhhc-----CCCEEecCcEEEECCCCcEEEEecCCCEEEEC-CEEECHHHHHHHHHhCCCeeeEEEEeeeccCCC
Confidence 999999999 68999999999999999999999999999985 999999999999999999999999997765
Q ss_pred CeEEEEEEcChhHHH-HHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHH
Q 005874 596 SYCVALVVASQPAVE-EWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADD 666 (672)
Q Consensus 596 ~~~va~v~~~~~~~~-~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~ 666 (672)
+.++|+|++.++... +...+.....++++|+.|++|+.|+++++.| +|++|||+|++|+++++++
T Consensus 515 ~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP------~t~sGKi~R~~Lr~~~~~q 580 (580)
T 3etc_A 515 QVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELP------KTISGKIRRVEIRDKDQSQ 580 (580)
T ss_dssp EEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC---------------------------
T ss_pred cEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCC------CCCCcCCcHHHHHhHhhcC
Confidence 358899998775321 1111111266778999999999999999987 9999999999999998763
No 7
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=3.5e-76 Score=655.19 Aligned_cols=511 Identities=21% Similarity=0.261 Sum_probs=335.9
Q ss_pred CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 005874 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (672)
Q Consensus 57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i 136 (672)
..|+.++|.+.++++|+++|+.... ++. ..+.+||+||.++++++|++|+++|+++||+|+|
T Consensus 19 ~~tl~~~l~~~a~~~p~~~a~~a~~----------~~~--------~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i 80 (550)
T 3rix_A 19 DGTAGEQLHKAMKRYALVPGTIAFT----------DAH--------IEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVV 80 (550)
T ss_dssp CSCHHHHHHHHHHHHHTSTTCEEEE----------ETT--------TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred cCCHHHHHHHHHHhCCCCceEEEee----------ecC--------CCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 3799999999999999999986321 111 1147999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcccc
Q 005874 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216 (672)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~ 216 (672)
+++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.......+.++.++.++......
T Consensus 81 ~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 159 (550)
T 3rix_A 81 CSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQ- 159 (550)
T ss_dssp ECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBT-
T ss_pred EcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCcccc-
Confidence 9999999999999999999999999999999999999999999999999998888888877788888888876543211
Q ss_pred cccccCCCeEEEeHHHHHhcccCCC------CCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhc--CC
Q 005874 217 SSVEQSGRWKITSFADVQILGRENP------VDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV--PD 288 (672)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~ 288 (672)
...++.++........ .+.....++++++|+|||||||.||||++||+++++.+......+ ..
T Consensus 160 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~ 230 (550)
T 3rix_A 160 ---------GFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQ 230 (550)
T ss_dssp ---------TBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCC
T ss_pred ---------CcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhcccc
Confidence 1234555554332211 111223457899999999999999999999999998887766542 26
Q ss_pred CCCCcEEEEecChHhHHHHHHHHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHH
Q 005874 289 LGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGV 365 (672)
Q Consensus 289 ~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~ 365 (672)
+.++|++++++|++|.+++...+.++..|+++++ +++..+.+. ++++++|+++++|+++..+.+..
T Consensus 231 ~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~ 299 (550)
T 3rix_A 231 IIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRS-----------LQDYKIQSALLVPTLFSFFAKST 299 (550)
T ss_dssp CCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHTTCSEEEECHHHHHHHHHCC
T ss_pred CCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHH-----------HHHcCCeEEEeCcHHHHHHHhCc
Confidence 7899999999999999999888889999999999 445555555 99999999999999999887632
Q ss_pred HHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhC
Q 005874 366 RKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLG 445 (672)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~ 445 (672)
... ....++||.+++||+++++++.+.+++.++
T Consensus 300 ~~~-----------------------------------------------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~ 332 (550)
T 3rix_A 300 LID-----------------------------------------------KYDLSNLHEIASGGAPLSKEVGEAVAKRFH 332 (550)
T ss_dssp GGG-----------------------------------------------GSCCTTCCEEEECSSCCCHHHHHHHHHHTT
T ss_pred ccc-----------------------------------------------ccCcccccEEEEecCCCCHHHHHHHHHHcC
Confidence 110 112248999999999999999999999988
Q ss_pred Cc-eecccCcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhh
Q 005874 446 AP-IGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK 524 (672)
Q Consensus 446 ~~-v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~ 524 (672)
.. ++++||+||+++.++.........+++|.|+|+++++|+|.+++..+ ++|+.|||+|+||+++.|||++|+.|+
T Consensus 333 ~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~---~~g~~GEl~v~g~~v~~GY~~~~~~t~ 409 (550)
T 3rix_A 333 LPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTL---GVNQRGELCVRGPMIMSGYVNNPEATN 409 (550)
T ss_dssp CSCCEEEEECGGGSSEEEECCTTCCCTTEEEEECTTCEEEEECTTTCCBC---CTTCCEEEEEESTTSCSEETTCHHHHH
T ss_pred CCccccccCcCccccceecCCCCCCCCCCcccccCCcEEEEEeCCCCcCC---CCCCCeEEEEeCCCcchhhcCChhhhh
Confidence 75 89999999999888777766677799999999999999995555554 588999999999999999999999999
Q ss_pred hhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEE
Q 005874 525 EVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVAL 601 (672)
Q Consensus 525 ~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~ 601 (672)
+.|+ .+|||+|||+|++++||.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+
T Consensus 410 ~~~~----~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~ 484 (550)
T 3rix_A 410 ALID----KDGWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAV 484 (550)
T ss_dssp HHBC----TTSCEEEEEEEEECTTCCEEEC--------------------------------------------------
T ss_pred hhcC----CCCCeecCcEEEEeCCceEEEEecchheeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEE
Confidence 9997 8899999999999999999999999999998 6999999999999999999999999998765 358889
Q ss_pred EEcChhHHHHHHHHcChhhhhcCCCCCccee-EEEEeecCCCCCCCccccccccChHHHHHHHHHHHHh
Q 005874 602 VVASQPAVEEWAAKQGIVGKNARLDKFEIPA-KIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLAR 669 (672)
Q Consensus 602 v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~-~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~i~~ 669 (672)
|++.++...+.. .....++++|+.++.|. .|+++++.| +|++||++|++|++++.+....
T Consensus 485 vv~~~~~~~~~~--~l~~~~~~~l~~~~~~~~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~~~~ 545 (550)
T 3rix_A 485 VVLEHGKTMTEK--EIVDYVASQVTTAKKLRGGVVFVDEVP------KGLTGKLDARKIREILIKAKKG 545 (550)
T ss_dssp ---------------------------------------------------------------------
T ss_pred EEecCCCCCCHH--HHHHHHHHhcccccccCCceEEEeecC------CCCCcceeHHHHHHHHHhhccc
Confidence 988776543322 22266778899886665 688999987 9999999999999999876543
No 8
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.6e-75 Score=644.57 Aligned_cols=495 Identities=24% Similarity=0.318 Sum_probs=409.4
Q ss_pred CCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 005874 55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV 134 (672)
Q Consensus 55 ~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V 134 (672)
+...|+.++|+++++++||++|+.+. + ..+.+||+||.++++++|.+|.++|+++||+|
T Consensus 13 ~~~~~l~~~l~~~a~~~p~~~A~~~~------------~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V 71 (517)
T 3r44_A 13 DKMKNIGWMLRQRATVSPRLQAYVEP------------S---------TDVRMTYAQMNALANRCADVLTALGIAKGDRV 71 (517)
T ss_dssp GGGGCHHHHHHHHHHHSTTSEEEEEG------------G---------GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred ccccCHHHHHHHHHHhCCCCeEEEeC------------C---------cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEE
Confidence 56689999999999999999999862 1 22479999999999999999999999999999
Q ss_pred EEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcc
Q 005874 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS 214 (672)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~ 214 (672)
+|+++|++++++++|||+++|+++||+++.++.+++.+++++++++++|++....+.+.......+....++.+..
T Consensus 72 ~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 147 (517)
T 3r44_A 72 ALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIG---- 147 (517)
T ss_dssp EEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEE----
T ss_pred EEEcCCCHHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccC----
Confidence 9999999999999999999999999999999999999999999999999999888777665544332221111100
Q ss_pred cccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcE
Q 005874 215 AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV 294 (672)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~ 294 (672)
..++.+...... ...+.....++++++|+|||||||.||||++||+++++.+......+ +++++|+
T Consensus 148 ------------~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~ 213 (517)
T 3r44_A 148 ------------ADSLAERLRSAA-ADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-DVRYRDR 213 (517)
T ss_dssp ------------HHHHHHHHHHCC-CCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-CCCTTCE
T ss_pred ------------cccHHHHhhccC-cCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-CCCCCCE
Confidence 011233332222 12233456789999999999999999999999999999999988888 9999999
Q ss_pred EEEecChHhHHHHHHHHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhh
Q 005874 295 YLAYLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDA 371 (672)
Q Consensus 295 ~l~~~pl~h~~~~~~~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~ 371 (672)
+++.+|++|.+++...+.++..|+++++ +++..+.+. ++++++|++.++|+++..+.+....
T Consensus 214 ~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~---- 278 (517)
T 3r44_A 214 LLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSL-----------IVEERVCIGGAVPAILNFMRQVPEF---- 278 (517)
T ss_dssp EEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHTTCCEEEECHHHHHHHHHSHHH----
T ss_pred EEEeCchHHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHH-----------HHHhCCeEEEeHHHHHHHHHhCccc----
Confidence 9999999999999886666669999998 455555555 9999999999999999988763211
Q ss_pred cCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecc
Q 005874 372 KGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQG 451 (672)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~ 451 (672)
.....++||.+++||+++++++.+.+... +++++++
T Consensus 279 -------------------------------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~ 314 (517)
T 3r44_A 279 -------------------------------------------AELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQG 314 (517)
T ss_dssp -------------------------------------------HHCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEE
T ss_pred -------------------------------------------ccCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEe
Confidence 12233589999999999999999999987 9999999
Q ss_pred cCcccccccccccCCC--CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhccc
Q 005874 452 YGLTETCAGGTFSEVD--DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV 529 (672)
Q Consensus 452 YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~ 529 (672)
||+||+++.++..... ....+++|.|.++++++|+| +++...+ .| .|||+|+||+++.|||++|+.|++.|
T Consensus 315 YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~---~g-~GEl~v~g~~v~~GY~~~p~~t~~~f-- 387 (517)
T 3r44_A 315 YALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRG-DDGVIRE---HG-EGEVVIKSDILLKEYWNRPEATRDAF-- 387 (517)
T ss_dssp EECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEEC-TTSCEES---SE-EEEEEEEETTSCSEETTCHHHHHHTE--
T ss_pred ecccccccceeecCCccccccCCCCCcCCCCeEEEEEC-CCCCCCC---CC-CeEEEEeCcchhhhhCCChhhhHhhh--
Confidence 9999998876654433 34568999999999999999 6665543 55 79999999999999999999999999
Q ss_pred CCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCCC---eEEEEEEcCh
Q 005874 530 DDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHS---YCVALVVASQ 606 (672)
Q Consensus 530 ~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~~---~~va~v~~~~ 606 (672)
.+|||+|||+|++++||.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++. .++|+|+...
T Consensus 388 ---~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~ 463 (517)
T 3r44_A 388 ---DNGWFRTGDIGEIDDEGYLYIKDRLKDMIIS-GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQ 463 (517)
T ss_dssp ---ETTEEEEEEEEEECTTSCEEEEECGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECT
T ss_pred ---cCCCEecceeEEEcCCeeEEEecCCcCEEEE-CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCC
Confidence 6899999999999999999999999999997 69999999999999999999999999976553 4667774433
Q ss_pred hHH-HHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHHHH
Q 005874 607 PAV-EEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLA 668 (672)
Q Consensus 607 ~~~-~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~i~ 668 (672)
... .+... ..++++|+.|++|+.|+++++.| +|++||++|++|+++|++.+.
T Consensus 464 ~~~~~~~l~----~~l~~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~~~~ 516 (517)
T 3r44_A 464 NEVSEQQIV----EYCGTRLARYKLPKKVIFAEAIP------RNPTGKILKTVLREQYSATVP 516 (517)
T ss_dssp TTCCHHHHH----HHHHHHSCGGGSCSEEEECSCCC------BCTTCCBCHHHHHHHHGGGCC
T ss_pred CCCCHHHHH----HHHHHhCCCCCCCCEEEEECCCC------CCCCcCccHHHHHHHHHhhcc
Confidence 221 11122 66778999999999999999987 999999999999999987653
No 9
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.3e-75 Score=642.95 Aligned_cols=490 Identities=25% Similarity=0.349 Sum_probs=403.6
Q ss_pred HHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Q 005874 62 ELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTR 141 (672)
Q Consensus 62 ~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns 141 (672)
++|++.++++||++|+..... +|+ ++||+||.++++++|++|+++|+++||+|+++++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~---------~~~-----------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~ 63 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETA---------AGD-----------KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKS 63 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEET---------TCC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSC
T ss_pred hHHHHHHHhCCCCceEEEecC---------CCc-----------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC
Confidence 578899999999999986321 344 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCccccccccc
Q 005874 142 AEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQ 221 (672)
Q Consensus 142 ~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~ 221 (672)
+++++++|||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.+....... .++.++.....
T Consensus 64 ~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~------- 134 (503)
T 4fuq_A 64 VEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGA--TVETLGPDGRG------- 134 (503)
T ss_dssp HHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTC--EEEECCTTSCS-------
T ss_pred HHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCc--eEEEecCCccc-------
Confidence 999999999999999999999999999999999999999999998766544443322221 23333222110
Q ss_pred CCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEEEecCh
Q 005874 222 SGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPL 301 (672)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl 301 (672)
.+.+.... ...........++++++|+|||||||.||||++||+++++.+......+ +++++|++++.+|+
T Consensus 135 -------~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~~~~p~ 205 (503)
T 4fuq_A 135 -------SLTDAAAG-ASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-RFTPDDVLIHALPI 205 (503)
T ss_dssp -------HHHHHHHT-SCSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCS
T ss_pred -------ccchhhhc-CCCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEeCCh
Confidence 11121111 1122233456789999999999999999999999999999999888888 99999999999999
Q ss_pred HhHHHHHH-HHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCchhH
Q 005874 302 AHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSK 377 (672)
Q Consensus 302 ~h~~~~~~-~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~ 377 (672)
+|.+++.. .+.+++.|+++++ +++..+.+. ++ ++|+++++|+++..+++.....
T Consensus 206 ~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~--~~t~~~~~P~~~~~l~~~~~~~--------- 263 (503)
T 4fuq_A 206 YHTHGLFVASNVTLFARGSMIFLPKFDPDKILDL-----------MA--RATVLMGVPTFYTRLLQSPRLT--------- 263 (503)
T ss_dssp SSHCCCCCCHHHHHHTTCEEEECSSCCHHHHHHH-----------HT--TCCEEEECHHHHHHHHTCTTCS---------
T ss_pred HHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHHH-----------Hh--hcCEEEEHHHHHHHHHhCCCcc---------
Confidence 99999765 6678999999988 345555444 55 8999999999999887531100
Q ss_pred HHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccCcccc
Q 005874 378 KLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTET 457 (672)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~ 457 (672)
....+++|.+++||+++++++.+.+...+++++++.||+||+
T Consensus 264 --------------------------------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~ 305 (503)
T 4fuq_A 264 --------------------------------------KETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTET 305 (503)
T ss_dssp --------------------------------------TTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTT
T ss_pred --------------------------------------ccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEccccc
Confidence 111248999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceE
Q 005874 458 CAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWF 537 (672)
Q Consensus 458 ~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~ 537 (672)
+..++.........+++|.|+++++++|+|++++..+ ++|+.|||+|+||+++.||+++|+.|++.|. .+|||
T Consensus 306 ~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~---~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~----~~g~~ 378 (503)
T 4fuq_A 306 NMNTSNPYDGDRVPGAVGPALPGVSARVTDPETGKEL---PRGDIGMIEVKGPNVFKGYWRMPEKTKSEFR----DDGFF 378 (503)
T ss_dssp EECBCCCSSSCCCTTEEEEBCTTCEEEEECTTTCCBC---CTTCCEEEEEESTTSCCCBTTCHHHHHHTBC----TTSCE
T ss_pred CcccccCCCCCCcCCccccCCCCeEEEEEECCCCCCC---cCCCceEEEEECCchhhhhcCChhhhHhhhC----CCCCe
Confidence 8776544444556689999999999999995566654 5889999999999999999999999999997 78999
Q ss_pred ecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEEcChhHHHHHHH
Q 005874 538 YTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVVASQPAVEEWAA 614 (672)
Q Consensus 538 ~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~~~~~~~~~~~ 614 (672)
+|||+|++++||.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+++++...+...
T Consensus 379 ~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~ 457 (503)
T 4fuq_A 379 ITGDLGKIDERGYVHILGRGKDLVIT-GGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQ 457 (503)
T ss_dssp EEEEEEEECTTCEEEECCSSTTCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHH
T ss_pred EcceeEEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHH
Confidence 99999999999999999999999997 6999999999999999999999999987654 3589999987654222111
Q ss_pred HcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHH
Q 005874 615 KQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFAD 665 (672)
Q Consensus 615 ~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~ 665 (672)
.. ..++++|+.|++|+.|+++++.| +|++||++|++|+++|++
T Consensus 458 l~--~~l~~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~ 500 (503)
T 4fuq_A 458 VL--HGLDGQLAKFKMPKKVIFVDDLP------RNTMGKVQKNVLRETYKD 500 (503)
T ss_dssp HH--HHHBTTBCGGGCCSEEEEESCCC------BCTTSCBCHHHHHHHTTT
T ss_pred HH--HHHHhhcccCCCCCEEEEECCCC------CCcccceeHHHHHHHHHH
Confidence 11 56778999999999999999987 999999999999998865
No 10
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=4.7e-75 Score=639.37 Aligned_cols=486 Identities=21% Similarity=0.265 Sum_probs=394.9
Q ss_pred CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 005874 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (672)
Q Consensus 57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i 136 (672)
++|+.++|+++++++||++|+.+.. .+ +++||+||.++++++|++|+++|+++||+|++
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~~----------~~-----------~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i 59 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVPA----------RG-----------LRLTHAELRARVEAVAARLHADGLRPQQRVAV 59 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEETT----------TT-----------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred CCcHHHHHHHHHHhCCCceEEEEcC----------CC-----------ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 3689999999999999999998620 13 37999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEE--CccchHHHHhhhcCCCCccEEEEecCCCcc
Q 005874 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVIC--GSKELKKLVDLSGQLDTVKHVICMDANIPS 214 (672)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~ 214 (672)
+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+ +.+..+.+.... +.++ ++
T Consensus 60 ~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~---~~~~-~~-------- 127 (504)
T 1t5h_X 60 VAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG---SGAR-II-------- 127 (504)
T ss_dssp ECCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC---CCCE-EE--------
T ss_pred EcCCCHHHHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc---ccce-eE--------
Confidence 999999999999999999999999999999999999999999999999 766554441111 1222 12
Q ss_pred cccccccCCCeEEEeHHHHHhccc----CCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCC-
Q 005874 215 AVSSVEQSGRWKITSFADVQILGR----ENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL- 289 (672)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~- 289 (672)
.++++..... ..+.+.....++++++|+|||||||.||||++||+++.+.+..+...+ ++
T Consensus 128 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~~ 192 (504)
T 1t5h_X 128 --------------FLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-GLR 192 (504)
T ss_dssp --------------EGGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-CCC
T ss_pred --------------EecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-CCC
Confidence 2222221110 111112345678999999999999999999999999999888877777 77
Q ss_pred -CCCcEEEEecChHhHHHHHH-HHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHH
Q 005874 290 -GSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDG 364 (672)
Q Consensus 290 -~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~ 364 (672)
.++|++++.+|++|.+++.. .+.++..|+++++ ++|..+.+. ++++++|+++++|+++..|.+.
T Consensus 193 ~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~ 261 (504)
T 1t5h_X 193 HGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQL-----------VQQEQVTSLFATPTHLDALAAA 261 (504)
T ss_dssp SSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHH-----------HHHHTCCEEECCHHHHHHHHHH
T ss_pred CCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHH-----------HHHhCCeEEEeChHHHHHHHhh
Confidence 88999999999999999854 7788999999999 344445444 9999999999999999998774
Q ss_pred HHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh
Q 005874 365 VRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL 444 (672)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~ 444 (672)
...... ....++||.+++||+++++++.+.+++.+
T Consensus 262 ~~~~~~---------------------------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~ 296 (504)
T 1t5h_X 262 AAHAGS---------------------------------------------SLKLDSLRHVTFAGATMPDAVLETVHQHL 296 (504)
T ss_dssp HCCTTC---------------------------------------------CCCCTTCCEEEECCTTCCHHHHHHHHHHC
T ss_pred hccccc---------------------------------------------cccCccccEEEEcCCcCCHHHHHHHHHhc
Confidence 311000 00124899999999999999999999999
Q ss_pred CCceecccCcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEc-cCcccccccCCchhh
Q 005874 445 GAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIA-GPNVTVGYFKNEEKT 523 (672)
Q Consensus 445 ~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~-g~~v~~gY~~~~~~t 523 (672)
++++++.||+||++. +.... ....+++|.|.++++++|+| +++.....++.|+.|||+|+ |++++.||+++|+.|
T Consensus 297 ~~~~~~~YG~TE~~~-~~~~~--~~~~~~~g~p~~~~~~~i~~-~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t 372 (504)
T 1t5h_X 297 PGEKVNIYGTTEAMN-SLYMR--QPKTGTEMAPGFFSEVRIVR-IGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQAT 372 (504)
T ss_dssp CSEEEEEEEETTTEE-EEEEE--SCSSSSEEBCCTTCCEEEEC-TTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHH
T ss_pred Ccceeeeeccccccc-ccccc--CCCCCccccCCCCCceeEEe-ccCCCCCcCCCCCcceEEEeCCceeeceecCCchhh
Confidence 999999999999832 22221 34568899999999999999 55532223568899999999 999999999999999
Q ss_pred hhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEE
Q 005874 524 KEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVA 600 (672)
Q Consensus 524 ~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va 600 (672)
++.| .+|||+|||+|++++||.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|
T Consensus 373 ~~~f-----~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a 446 (504)
T 1t5h_X 373 AEKL-----QDGWYRTSDVAVWTPEGTVRILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTA 446 (504)
T ss_dssp HHHE-----ETTEEEEEEEEEECTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEE
T ss_pred hhhh-----cCCccccCcEEEECCCceEEEeCcccCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEE
Confidence 9999 5789999999999999999999999999997 6999999999999999999999999998765 46999
Q ss_pred EEEcChhHHHHHHHHcChhhhhc-CCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHH
Q 005874 601 LVVASQPAVEEWAAKQGIVGKNA-RLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFA 664 (672)
Q Consensus 601 ~v~~~~~~~~~~~~~~~~~~~~~-~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~ 664 (672)
+|+++++...+.... ...+++ +|+.|++|+.|+++++.| +|++||++|++|+++|+
T Consensus 447 ~vv~~~~~~~~~~~l--~~~~~~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 447 CVVPRLGETLSADAL--DTFCRSSELADFKRPKRYFILDQLP------KNALNKVLRRQLVQQVS 503 (504)
T ss_dssp EEEECTTCCCCHHHH--HHHHHTSSCCGGGSCSEEEECSCCC------BCTTSCBCHHHHHHHHC
T ss_pred EEEecCCcCcCHHHH--HHHHhhccCcccccceEEEEhhhCC------CCCCCCEeHHHHHHHhc
Confidence 999876531111111 145556 899999999999999987 99999999999999874
No 11
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=1.3e-75 Score=649.42 Aligned_cols=499 Identities=20% Similarity=0.245 Sum_probs=334.0
Q ss_pred CCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 005874 55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV 134 (672)
Q Consensus 55 ~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V 134 (672)
....|+.++|+++++++||++|+.+ .++ .+||+||.++++++|++|+++|+++||+|
T Consensus 27 ~~~~tl~~~l~~~a~~~p~~~Al~~------------~~~-----------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V 83 (544)
T 3o83_A 27 WIDQPLTRILTVGVQSHPHSLAIIC------------GER-----------QLSYIELDRLSTNLATRLAEKGLGKGDTA 83 (544)
T ss_dssp CCCCCTTHHHHHHHHHCTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred CCCCCHHHHHHHHHHhCCCceEEEc------------CCC-----------ceeHHHHHHHHHHHHHHHHHCCCCCCCEE
Confidence 3457999999999999999999986 333 79999999999999999999999999999
Q ss_pred EEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccch-----HHHHhhhcCCCCccEEEEec
Q 005874 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL-----KKLVDLSGQLDTVKHVICMD 209 (672)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~~~~~~l~~ii~~~ 209 (672)
+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.... ..+.......+....++..+
T Consensus 84 ~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (544)
T 3o83_A 84 LVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLN 163 (544)
T ss_dssp EECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEET
T ss_pred EEECCCCHHHHHHHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEec
Confidence 9999999999999999999999999999999999999999999999999987653 33344444455566666655
Q ss_pred CCCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCC
Q 005874 210 ANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL 289 (672)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~ 289 (672)
..... ..+.++.........+.....++++++|+|||||||.||||++||+++++.+......+ ++
T Consensus 164 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-~~ 229 (544)
T 3o83_A 164 HQATD-------------FGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-GL 229 (544)
T ss_dssp CCTTS-------------EEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-TC
T ss_pred CCccc-------------cchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-CC
Confidence 43211 23445544433333333456789999999999999999999999999999999988888 99
Q ss_pred CCCcEEEEecChHhHHHHHH--HHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHH
Q 005874 290 GSKDVYLAYLPLAHVLELVA--ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDG 364 (672)
Q Consensus 290 ~~~d~~l~~~pl~h~~~~~~--~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~ 364 (672)
+++|++++++|++|.+++.. .+.++..|+++++ +++..+.+. ++++++|+++++|+++..+++.
T Consensus 230 ~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~ 298 (544)
T 3o83_A 230 NSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSI-----------IQRHQVNMASLVPSAVIMWLEK 298 (544)
T ss_dssp CTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHH-----------HHHHTCCEEEECHHHHHHHHHH
T ss_pred CCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCCCCHHHHHHH-----------HHHHCCCEEEechHHHHHHHhc
Confidence 99999999999999999875 6778999999999 344444444 9999999999999999998875
Q ss_pred HHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh
Q 005874 365 VRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL 444 (672)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~ 444 (672)
...... ..++||.+++||+++++++.+.+++.+
T Consensus 299 ~~~~~~-----------------------------------------------~~~~lr~i~~gG~~l~~~~~~~~~~~~ 331 (544)
T 3o83_A 299 AAQYKD-----------------------------------------------QIQSLKLLQVGGASFPESLARQVPEVL 331 (544)
T ss_dssp HTTTHH-----------------------------------------------HHTTCCEEEEESSCCCHHHHTHHHHHH
T ss_pred hhhccc-----------------------------------------------cCCcceEEEEcCCCCCHHHHHHHHHHh
Confidence 322111 113899999999999999999999999
Q ss_pred CCceecccCcccccccccccCCCC-CCCCccCCCc-CCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchh
Q 005874 445 GAPIGQGYGLTETCAGGTFSEVDD-SSVGRVGAPL-PCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEK 522 (672)
Q Consensus 445 ~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~~G~p~-~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~ 522 (672)
++++++.||+||++..++...... ...+++|.|+ ++++++|+| +++..+ ++|+.|||+|+||+++.||+++|+.
T Consensus 332 ~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~---~~g~~GEl~v~g~~v~~GY~~~~~~ 407 (544)
T 3o83_A 332 NCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVD-EQYREV---PEGEIGMLATRGPYTFCGYYQSPEH 407 (544)
T ss_dssp CSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEEC-TTSCBC---CTTCCEEEEEECTTSCSCCTTCHHH
T ss_pred CCcEEeeeccccccceeecCCCchhhccCCCceecCCCcEEEEEC-CCCCCC---CCCCeeEEEEecCCcchhhcCChhh
Confidence 999999999999875444322211 2236899996 899999999 777665 4889999999999999999999999
Q ss_pred hhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEE
Q 005874 523 TKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCV 599 (672)
Q Consensus 523 t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~v 599 (672)
|++.|+ .+|||+|||+|++++||.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++..++ +.++
T Consensus 408 t~~~f~----~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~ 482 (544)
T 3o83_A 408 NSQVFD----EDNYYYSGDLVQRTPDGNLRVVGRIKDQINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSC 482 (544)
T ss_dssp HHHHBC----TTCCEEEEEEEEECTTSCEEEEEEEC--------------------------------------------
T ss_pred hhhhCC----CCCCeEcCCEEEEcCCCCEEEEeecCCEEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEE
Confidence 999997 8899999999999999999999999999996 6999999999999999999999999997665 3588
Q ss_pred EEEEcChhHHHHHHHHcChhhhhc-CCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHH
Q 005874 600 ALVVASQPAVEEWAAKQGIVGKNA-RLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADD 666 (672)
Q Consensus 600 a~v~~~~~~~~~~~~~~~~~~~~~-~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~ 666 (672)
|+|++.+..... ......+.+ +|+.|++|+.|+++++.| +|++||++|++|+++|++.
T Consensus 483 a~vv~~~~~~~~---~~l~~~~~~~~l~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~ 541 (544)
T 3o83_A 483 AFIVSRNPELKA---VVLRRHLMELGIAQYKLPDQIKLIESLP------LTAVGKVDKKQLRSILNTS 541 (544)
T ss_dssp --------------------------------------------------------------------
T ss_pred EEEEeCCCCCCH---HHHHHHHHhCCCCcccCCcEEEEeccCC------CCCCCCCcHHHHHHHHhhc
Confidence 999887633221 111144445 799999999999999987 9999999999999998763
No 12
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=4.8e-74 Score=639.16 Aligned_cols=501 Identities=19% Similarity=0.251 Sum_probs=416.4
Q ss_pred CCCHHHHHHHHHHH-----cCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhc-CCCC
Q 005874 57 ISTLAELFEQSCKE-----HGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQL-GHKK 130 (672)
Q Consensus 57 ~~tl~~~~~~~a~~-----~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~-g~~~ 130 (672)
.+++.++|+++++. +||++|+.+. ++. |+.+.+||+||.++++++|++|.+. |+++
T Consensus 37 ~~~~~~~l~~~a~~~~a~~~p~~~al~~~-----------~~~-------g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~ 98 (570)
T 3c5e_A 37 FNFASDVLDHWADMEKAGKRPPSPALWWV-----------NGK-------GKELMWNFRELSENSQQAANVLSGACGLQR 98 (570)
T ss_dssp CCHHHHTHHHHHHHHHTTSSCCCEEEEEE-----------CSS-------SCEEEEEHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred ccHHHHHHHHHHhhccccCCCCceEEEEE-----------cCC-------CceeEEeHHHHHHHHHHHHHHHHHccCCCC
Confidence 45678999999999 9999999874 211 2235899999999999999999999 9999
Q ss_pred CCEEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecC
Q 005874 131 EERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDA 210 (672)
Q Consensus 131 g~~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~ 210 (672)
||+|+|+++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++++..+.+.+.....+.++.++.++.
T Consensus 99 gd~V~i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (570)
T 3c5e_A 99 GDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSE 178 (570)
T ss_dssp TCEEEEECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESS
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999888877776667777777777654
Q ss_pred CCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHH--HHHHHHhhcCC
Q 005874 211 NIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLA--TVSAVMTIVPD 288 (672)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~--~~~~~~~~~~~ 288 (672)
.... + ..+++++...... ..+.....++++++|+|||||||.||||++||+ +++ ..... ..+ .
T Consensus 179 ~~~~---------~--~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-~ 243 (570)
T 3c5e_A 179 KSCD---------G--WLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-G 243 (570)
T ss_dssp SCCT---------T--SEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-S
T ss_pred cCcc---------c--cccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-C
Confidence 2110 1 2346666544322 122344568999999999999999999999999 554 33333 445 8
Q ss_pred CCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEeeC-----CcccccCchhhhhcccccccccccceeeecchHHHHHHH
Q 005874 289 LGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYG-----TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVR 362 (672)
Q Consensus 289 ~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~-----~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~ 362 (672)
++++|++++++|++|.+++.. .+.++..|+++++. +|..+.+. ++++++|+++++|+++..|.
T Consensus 244 ~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~ 312 (570)
T 3c5e_A 244 LQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKT-----------LSSYPIKSMMGAPIVYRMLL 312 (570)
T ss_dssp CCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHH-----------HHHSCCCEEEECHHHHHHHH
T ss_pred CCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHH-----------HHHhCCeEEeccHHHHHHHH
Confidence 899999999999999999875 77889999999983 33334444 99999999999999999887
Q ss_pred HHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHH
Q 005874 363 DGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINI 442 (672)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~ 442 (672)
+.. .. ....++||.+++||+++++++.+.+++
T Consensus 313 ~~~---~~---------------------------------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~ 344 (570)
T 3c5e_A 313 QQD---LS---------------------------------------------SYKFPHLQNCVTVGESLLPETLENWRA 344 (570)
T ss_dssp TSC---TT---------------------------------------------TCCCTTCCEEEEESSCCCHHHHHHHHH
T ss_pred hcc---cc---------------------------------------------ccccccceEEEEcCCcCCHHHHHHHHH
Confidence 520 00 011248999999999999999999999
Q ss_pred HhCCceecccCcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEc-----cCccccccc
Q 005874 443 CLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIA-----GPNVTVGYF 517 (672)
Q Consensus 443 ~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~-----g~~v~~gY~ 517 (672)
.++++++++||+||++..++.........+++|.|+++++++|+| +++..+ +.|+.|||+|+ |++++.||+
T Consensus 345 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~g~~~---~~G~~GEl~v~~~~~~g~~v~~GY~ 420 (570)
T 3c5e_A 345 QTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIID-DKGNVL---PPGTEGDIGIRVKPIRPIGIFSGYV 420 (570)
T ss_dssp HHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCCEEEEC-TTSCBC---CTTCCEEEEEECSSBCCTTCCCEET
T ss_pred HhCCchhhccchhhcccceecCcccccCCCcccccCCCceEEEEC-CCCCCC---CCCCCCeeEEeccCCCCchhhcccc
Confidence 889999999999999876665544455668999999999999999 677665 48899999999 999999999
Q ss_pred CCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC--
Q 005874 518 KNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH-- 595 (672)
Q Consensus 518 ~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~-- 595 (672)
++|+.|++.| .+|||+|||+|++|+||.|+|+||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++
T Consensus 421 ~~~~~t~~~f-----~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~ 494 (570)
T 3c5e_A 421 DNPDKTAANI-----RGDFWLLGDRGIKDEDGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVR 494 (570)
T ss_dssp TCHHHHHHTE-----ETTEEEEEEEEEECTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTT
T ss_pred CChhHhhhhh-----cCCccccceeEEEcCCceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCC
Confidence 9999999999 5789999999999999999999999999997 6999999999999999999999999997654
Q ss_pred -CeEEEEEEcChhHH---HHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHH
Q 005874 596 -SYCVALVVASQPAV---EEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFAD 665 (672)
Q Consensus 596 -~~~va~v~~~~~~~---~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~ 665 (672)
+.++|+|++.++.. .+...+.....++++|+.|++|+.|+++++.| +|++||++|++|++.+.+
T Consensus 495 g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~ 562 (570)
T 3c5e_A 495 GEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLP------KTVTGKIQRAKLRDKEWK 562 (570)
T ss_dssp EEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCC------BCTTCCBCHHHHHHHHTC
T ss_pred CeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCC------CCCCcCCcHHHHHHHHHh
Confidence 45899999876541 11111111266678999999999999999987 999999999999998854
No 13
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=1.5e-73 Score=644.79 Aligned_cols=526 Identities=20% Similarity=0.230 Sum_probs=417.8
Q ss_pred CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 005874 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (672)
Q Consensus 57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i 136 (672)
.++++++|+++++++||++|+.+.. .. .+..+.+||+||.++++++|++|+++|+++||+|+|
T Consensus 75 ~n~~~~~l~~~a~~~pd~~Al~~~~-----------~~------~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i 137 (652)
T 1pg4_A 75 LNLAANCLDRHLQENGDRTAIIWEG-----------DD------TSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAI 137 (652)
T ss_dssp ECHHHHHTGGGHHHHTTSEEEEEEC-----------SS------TTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred hhHHHHHHHHHhccCCCceEEEEEc-----------CC------CCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 3568999999999999999999742 11 124468999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccch---------HHHHhhhcCCC--CccEE
Q 005874 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL---------KKLVDLSGQLD--TVKHV 205 (672)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~l~~~~~~~~--~l~~i 205 (672)
+++|++++++++|||+++|++++|+++.++++++.++++++++++||+++... +.+.+.....+ .++.+
T Consensus 138 ~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 217 (652)
T 1pg4_A 138 YMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHV 217 (652)
T ss_dssp ECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEE
T ss_pred EeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEE
Confidence 99999999999999999999999999999999999999999999999987642 23444433332 46677
Q ss_pred EEecCCCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHH-HHh
Q 005874 206 ICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA-VMT 284 (672)
Q Consensus 206 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~ 284 (672)
++++...... . . ......+|+++...... ..+.....++++++|+|||||||.||||++||++++..+.. ...
T Consensus 218 i~~~~~~~~~-~-~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~ 291 (652)
T 1pg4_A 218 IVLKRTGSDI-D-W---QEGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKY 291 (652)
T ss_dssp EEECSSCCCC-C-C---CBTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-c-c---cCCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHH
Confidence 7765432110 0 0 00123568887654322 12234456799999999999999999999999999876643 444
Q ss_pred hcCCCCCCcEEEEecChHhHHHHH-HHHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHH
Q 005874 285 IVPDLGSKDVYLAYLPLAHVLELV-AENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRD 363 (672)
Q Consensus 285 ~~~~~~~~d~~l~~~pl~h~~~~~-~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~ 363 (672)
.+ +++++|++++++|++|+.++. .++.+|..|+++++.+......+ +..+...++++++|+++++|+++..|.+
T Consensus 292 ~~-~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~----~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 366 (652)
T 1pg4_A 292 VF-DYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPT----PARMCQVVDKHQVNILYTAPTAIRALMA 366 (652)
T ss_dssp HT-TCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSS----TTHHHHHHHHHTCSEEEECHHHHHHHHT
T ss_pred hc-CCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCC----HHHHHHHHHHhCCeEEEeCHHHHHHHHh
Confidence 56 899999999999999999984 47889999999998332111111 1112223999999999999999998876
Q ss_pred HHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHH
Q 005874 364 GVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC 443 (672)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~ 443 (672)
...... .....++||.+++||+++++++.+++.+.
T Consensus 367 ~~~~~~---------------------------------------------~~~~l~sLr~i~~gGe~l~~~~~~~~~~~ 401 (652)
T 1pg4_A 367 EGDKAI---------------------------------------------EGTDRSSLRILGSVGEPINPEAWEWYWKK 401 (652)
T ss_dssp TGGGGT---------------------------------------------TTCCCTTCCEEEEESSCCCHHHHHHHHHH
T ss_pred cCcccc---------------------------------------------ccCCcCceEEEEEecCCCCHHHHHHHHHH
Confidence 321100 01123589999999999999999999998
Q ss_pred hC---CceecccCcccccccccccCCC--CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEcc--Ccccccc
Q 005874 444 LG---APIGQGYGLTETCAGGTFSEVD--DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAG--PNVTVGY 516 (672)
Q Consensus 444 ~~---~~v~~~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g--~~v~~gY 516 (672)
+| +++++.||+||+++.++..... ....+++|.|+++++++|+| +++..+ +.|+.|||+|+| |++++||
T Consensus 402 ~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v---~~g~~GEl~i~g~~p~~~~gY 477 (652)
T 1pg4_A 402 IGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQ---EGATEGNLVITDSWPGQARTL 477 (652)
T ss_dssp TTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBC---CSSEEEEEEECSCCTTCCCEE
T ss_pred hCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCc---CCCceEEEEEccCCCchhhhh
Confidence 88 8999999999998766654432 34568999999999999999 677655 468899999999 7999999
Q ss_pred cCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC-
Q 005874 517 FKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH- 595 (672)
Q Consensus 517 ~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~- 595 (672)
|++|+.+.+.+... .+|||+|||+|++|+||.|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++
T Consensus 478 ~~~~e~~~~~~~~~--~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~ 554 (652)
T 1pg4_A 478 FGDHERFEQTYFST--FKNMYFSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAI 554 (652)
T ss_dssp TTCHHHHHHHHHSS--STTSEEEEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETT
T ss_pred cCCHHHHHhhhhhc--CCCEEECCcEEEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCC
Confidence 99999998877521 3689999999999999999999999999998 5999999999999999999999999997654
Q ss_pred --CeEEEEEEcChhHHH-HHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHHHH
Q 005874 596 --SYCVALVVASQPAVE-EWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLA 668 (672)
Q Consensus 596 --~~~va~v~~~~~~~~-~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~i~ 668 (672)
+.++|+|+++++... +...+.....++++|+.|++|+.|++++++| +|++||++|++|++.+.++|+
T Consensus 555 ~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP------~T~sGKi~R~~L~~~~~~~~~ 624 (652)
T 1pg4_A 555 KGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLP------KTRSGKIMRRILRKIAAGDTS 624 (652)
T ss_dssp TEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCC------BCTTSCBCHHHHHHHHHTC--
T ss_pred CCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCC------CCCCccchHHHHHHHHhCCCC
Confidence 469999998765311 1011111266778999999999999999988 999999999999999987654
No 14
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1e-74 Score=637.75 Aligned_cols=489 Identities=24% Similarity=0.307 Sum_probs=326.2
Q ss_pred CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 005874 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (672)
Q Consensus 57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i 136 (672)
..|+.++|+++++++||++|+.+ +++ .+||+||.++++++|++|+++|+++||+|++
T Consensus 5 ~~tl~~~l~~~a~~~pd~~Al~~------------~~~-----------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i 61 (509)
T 3ivr_A 5 DFTLADVYRRNAALFPDRTAFMV------------DGV-----------RLTHRDYLARAERLASGLLRDGVHTGDRVAI 61 (509)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred cCCHHHHHHHHHHHCCCceEEEE------------CCc-----------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 47999999999999999999986 444 7999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcccc
Q 005874 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216 (672)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~ 216 (672)
+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+.......+.++.++.+++....
T Consensus 62 ~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 139 (509)
T 3ivr_A 62 LSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGP-- 139 (509)
T ss_dssp ECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCSS--
T ss_pred EcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCcC--
Confidence 999999999999999999999999999999999999999999999999999887766666677777777776553211
Q ss_pred cccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEE
Q 005874 217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYL 296 (672)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l 296 (672)
+.++.......+.+.....++++++|+|||||||.||||++||+++++.+......+ +++++|+++
T Consensus 140 -------------~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l 205 (509)
T 3ivr_A 140 -------------FAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-RLTEADVNL 205 (509)
T ss_dssp -------------CEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEEE
T ss_pred -------------hhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-CCCCCcEEE
Confidence 111111112222334456789999999999999999999999999999999988888 999999999
Q ss_pred EecChHhHHHHHHHHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcC
Q 005874 297 AYLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKG 373 (672)
Q Consensus 297 ~~~pl~h~~~~~~~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~ 373 (672)
+++|++|.+++...+.++..|++.++ +++..+.+. ++++++|+++++|+++..+++... .
T Consensus 206 ~~~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~~~~~l~~~~~--~---- 268 (509)
T 3ivr_A 206 GMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARD-----------IEAHKVTVMAEFAPMLGNILDQAA--P---- 268 (509)
T ss_dssp ECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHHTCCEEEEETTHHHHHHHHCC--G----
T ss_pred EeCCCcchhHHHHHHHHHHhCCcEEEecccCHHHHHHH-----------HHHHCCcEEEecHHHHHHHHhccc--c----
Confidence 99999999999887765555554444 455555555 999999999999999999887420 0
Q ss_pred chhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCceeccc
Q 005874 374 GLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQGY 452 (672)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~Y 452 (672)
...+++|.++.+|++ +..+.+...+ ++++++.|
T Consensus 269 -------------------------------------------~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~Y 302 (509)
T 3ivr_A 269 -------------------------------------------AQLASLRAVTGLDTP---ETIERFEATCPNATFWATF 302 (509)
T ss_dssp -------------------------------------------GGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEE
T ss_pred -------------------------------------------cchhhhheecccCCh---HHHHHHHHhcCCCeEEccc
Confidence 011389999999988 7778888877 99999999
Q ss_pred CcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCC
Q 005874 453 GLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDK 532 (672)
Q Consensus 453 G~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~ 532 (672)
|+||++++++.....+ ...++|.|+++++++|+| +++..+ ++|+.|||+|+|++++.||+++|+.|++.|
T Consensus 303 G~TE~~~~~~~~~~~~-~~~~~G~p~~~~~~~i~d-~~~~~~---~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f----- 372 (509)
T 3ivr_A 303 GQSETSGLSTFAPYRD-RPKSAGRPLFWRTVAVVD-AEDRPL---PPGEVGEIVLRGPTVFKGYWNNAAATQHAF----- 372 (509)
T ss_dssp EEGGGTEEEEEEEGGG-STTSCCEECTTCEEEEEC-TTSCBC---CTTCCEEEEEESTTSCCEETTCHHHHHHHT-----
T ss_pred CccccccccccCcccc-CCCcccccCCCcEEEEEC-CCCCCC---CCCCceEEEEecCCccccccCCHHHhHHHh-----
Confidence 9999998776654332 234599999999999999 666654 588999999999999999999999999999
Q ss_pred CCceEecCcEEEEccCceEEEEecC--CCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCCC---eEEEEEEcChh
Q 005874 533 GMRWFYTGDVGQVHADGCLEIIDRK--KDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHS---YCVALVVASQP 607 (672)
Q Consensus 533 ~~gw~~TGDlg~~~~dG~l~i~gR~--~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~~---~~va~v~~~~~ 607 (672)
.+|||+|||+|++++||.|+++||+ +|+||+ +|++|+|.+||++|.+||+|.+|+|++.+++. .++|+|++.++
T Consensus 373 ~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~-~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~ 451 (509)
T 3ivr_A 373 RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKT-GGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPG 451 (509)
T ss_dssp GGGSEEEEEEEEECTTSCEEEEEEC-------------------------------------------------------
T ss_pred hcCCcccccEEEECCCceEEEeCCCCcceeEEE-CCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCC
Confidence 5799999999999999999999999 999996 69999999999999999999999999987653 58899998776
Q ss_pred HHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHH
Q 005874 608 AVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADD 666 (672)
Q Consensus 608 ~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~ 666 (672)
...+... ....++++|+.|++|+.|+++++.| +|++||++|++|++++++.
T Consensus 452 ~~~~~~~--l~~~l~~~L~~~~~P~~i~~v~~lP------~t~~GKidr~~Lr~~~~~~ 502 (509)
T 3ivr_A 452 ESIAADA--LAEFVASLIARYKKPKHVVFVEALP------KDAKGAIDRAAVKTAHGQE 502 (509)
T ss_dssp -----------------------------------------------------------
T ss_pred CCCCHHH--HHHHHHhhCcccCCCcEEEEecCCC------CCCCCCccHHHHHHHHhhc
Confidence 5433222 2267788999999999999999987 9999999999999999874
No 15
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=1.5e-73 Score=644.87 Aligned_cols=530 Identities=19% Similarity=0.197 Sum_probs=416.6
Q ss_pred CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHH-hcCCCCCCEEE
Q 005874 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLA-QLGHKKEERVA 135 (672)
Q Consensus 57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~-~~g~~~g~~V~ 135 (672)
.+++.++|+++++++||++|+.+.. .. .+..+.+||+||.++++++|..|+ ++|+++||+|+
T Consensus 81 ~n~~~~~l~~~a~~~pd~~Al~~~~-----------~~------~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~ 143 (663)
T 1ry2_A 81 LNACYNCVDRHALKTPNKKAIIFEG-----------DE------PGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVA 143 (663)
T ss_dssp ECHHHHHTHHHHTTCTTSEEEEEEC-----------SS------TTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEE
T ss_pred ccHHHHHHHHHhccCCCceEEEEEc-----------CC------CCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 4679999999999999999999742 11 234468999999999999999999 99999999999
Q ss_pred EEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccch---------HHHHhhhcCCCCccEEE
Q 005874 136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL---------KKLVDLSGQLDTVKHVI 206 (672)
Q Consensus 136 i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~l~~~~~~~~~l~~ii 206 (672)
|+++|++++++++|||+++|++++|+++.++.+++.++++++++++||+++... +.+.+....++.++.++
T Consensus 144 i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 223 (663)
T 1ry2_A 144 VYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVL 223 (663)
T ss_dssp ECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEE
T ss_pred EEcCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEE
Confidence 999999999999999999999999999999999999999999999999987642 33445555667777787
Q ss_pred EecCCCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHH-HHhh
Q 005874 207 CMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA-VMTI 285 (672)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~ 285 (672)
+++........ . ......+|+++...... ..+.....++++++|+|||||||.||||++||++++..+.. ....
T Consensus 224 ~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~ 298 (663)
T 1ry2_A 224 VYRKTNNPSVA-F---HAPRDLDWATEKKKYKT-YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYT 298 (663)
T ss_dssp EECSSCCSSCC-C---CSSSEEEHHHHHTTSCS-CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHH
T ss_pred EEecCCCCccc-c---CCCccccHHHHHhhcCC-CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHh
Confidence 77643210000 0 01123567777654322 22334456799999999999999999999999998876643 4445
Q ss_pred cCCCCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHH
Q 005874 286 VPDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDG 364 (672)
Q Consensus 286 ~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~ 364 (672)
+ +++++|++++++|++|+.+... ++.+|..|+++++.+......+ +..+...++++++|+++++|++++.|.+.
T Consensus 299 ~-~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~----~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~ 373 (663)
T 1ry2_A 299 F-DTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPN----YSRYWDIIDEHKVTQFYVAPTALRLLKRA 373 (663)
T ss_dssp S-CCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSC----TTHHHHHHHHTTCSEEEECHHHHHHHTTS
T ss_pred c-CCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCC----HHHHHHHHHHcCCCEEEecHHHHHHHHhc
Confidence 6 8999999999999999999854 7789999999998322111111 11122339999999999999999887652
Q ss_pred HHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh
Q 005874 365 VRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL 444 (672)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~ 444 (672)
..+.. +....++||.+++||+++++++.+++.+.+
T Consensus 374 ~~~~~---------------------------------------------~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~ 408 (663)
T 1ry2_A 374 GDSYI---------------------------------------------ENHSLKSLRCLGSVGEPIAAEVWEWYSEKI 408 (663)
T ss_dssp CTTSS---------------------------------------------SSCCCTTCCEEEECSSCCCHHHHHHHHHTT
T ss_pred Ccccc---------------------------------------------ccCCcCceEEEEEEcCCCCHHHHHHHHHHh
Confidence 11000 011235899999999999999999999988
Q ss_pred C---CceecccCcccccccccccCC---CCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEcc--Ccccccc
Q 005874 445 G---APIGQGYGLTETCAGGTFSEV---DDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAG--PNVTVGY 516 (672)
Q Consensus 445 ~---~~v~~~YG~TE~~~~~~~~~~---~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g--~~v~~gY 516 (672)
| +++++.||+||+++.++.... .....+++|.|+++++++|+|.+++..++ ..|+.|||+++| |+++.||
T Consensus 409 g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~--~~g~~Gel~i~g~~p~~~~gy 486 (663)
T 1ry2_A 409 GKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELN--TSHAEGVLAVKAAWPSFARTI 486 (663)
T ss_dssp SCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEE--CSSCEEEEEESSCCTTSCCEE
T ss_pred CCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCC--CCCcceEEEEecCCCchhccc
Confidence 8 899999999999876655433 23456899999999999999933676654 127899999999 5899999
Q ss_pred cCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC-
Q 005874 517 FKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH- 595 (672)
Q Consensus 517 ~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~- 595 (672)
|++|+.+.+.|... .+|||+|||+|++|+||.|+|+||+||+||+ +|++|+|.+||++|.+||.|.+|+|++.+++
T Consensus 487 ~~~~~~~~~~~~~~--~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~ 563 (663)
T 1ry2_A 487 WKNHDRYLDTYLNP--YPGYYFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDL 563 (663)
T ss_dssp TTCHHHHHHHHTSS--STTSEEEEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCT
T ss_pred ccChHHHHHhhhcC--CCCEEEcCCEEEEcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCC
Confidence 99999998887522 3689999999999999999999999999998 5999999999999999999999999998764
Q ss_pred --CeEEEEEEcChhHH---H-H----HHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHH
Q 005874 596 --SYCVALVVASQPAV---E-E----WAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFAD 665 (672)
Q Consensus 596 --~~~va~v~~~~~~~---~-~----~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~ 665 (672)
+.++|+|+++++.. . + ...+.....++++|+.|++|+.|++++++| +|++||++|++|++.+.+
T Consensus 564 ~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP------~T~sGKi~R~~L~~~~~~ 637 (663)
T 1ry2_A 564 TGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLP------KTRSGKIMRRILRKILAG 637 (663)
T ss_dssp TSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCC------BCTTSCBCHHHHHHSCC-
T ss_pred CCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCC------CCCccCchHHHHHHHHcC
Confidence 46999999887643 1 1 011122266778999999999999999988 999999999999999877
Q ss_pred HHHh
Q 005874 666 DLAR 669 (672)
Q Consensus 666 ~i~~ 669 (672)
+++.
T Consensus 638 ~~~~ 641 (663)
T 1ry2_A 638 ESDQ 641 (663)
T ss_dssp ----
T ss_pred CCCC
Confidence 6543
No 16
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=7.2e-74 Score=636.79 Aligned_cols=485 Identities=20% Similarity=0.240 Sum_probs=393.4
Q ss_pred CCCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCE
Q 005874 54 WEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEER 133 (672)
Q Consensus 54 ~~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~ 133 (672)
++...|+.++|+++++++||++|+.+ .++ .+||+||.++++++|.+|.++|+++||+
T Consensus 35 ~~~~~~l~~~l~~~a~~~p~~~Al~~------------~~~-----------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~ 91 (563)
T 1amu_A 35 YPRDKTIHQLFEEQVSKRPNNVAIVC------------ENE-----------QLTYHELNVKANQLARIFIEKGIGKDTL 91 (563)
T ss_dssp CCTTCCHHHHHHHHHHHCTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCE
T ss_pred CCCCCcHHHHHHHHHHHCCCCeEEEe------------CCc-----------eecHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence 34457999999999999999999986 333 7999999999999999999999999999
Q ss_pred EEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCc
Q 005874 134 VAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIP 213 (672)
Q Consensus 134 V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~ 213 (672)
|+|+++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+... .....+..++....
T Consensus 92 V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~----~~~~~~~~~~~~~~ 167 (563)
T 1amu_A 92 VGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNI----QFNGQVEIFEEDTI 167 (563)
T ss_dssp EEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTS----CCCSEEEECCCSTT
T ss_pred EEEEeCCCHHHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhc----cccCceeeecchhh
Confidence 99999999999999999999999999999999999999999999999999998765543322 11112222221100
Q ss_pred ccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCc
Q 005874 214 SAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKD 293 (672)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d 293 (672)
.. ...........++++++|+|||||||.||||++||+|+.+.+......+ +++++|
T Consensus 168 --------------------~~--~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d 224 (563)
T 1amu_A 168 --------------------KI--REGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-NVTEKD 224 (563)
T ss_dssp --------------------TT--SCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-CCCTTC
T ss_pred --------------------cc--ccCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-CCCCCC
Confidence 00 0011112345678999999999999999999999999999888877777 899999
Q ss_pred EEEEecChHhHHHHHHHHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcC
Q 005874 294 VYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKG 373 (672)
Q Consensus 294 ~~l~~~pl~h~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~ 373 (672)
++++++|++|..++...+.+++.|+++++.+.....+ +..+...++++++|++.++|+++..+...
T Consensus 225 ~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~-----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--------- 290 (563)
T 1amu_A 225 RIGQFASISFDASVWEMFMALLTGASLYIILKDTIND-----FVKFEQYINQKEITVITLPPTYVVHLDPE--------- 290 (563)
T ss_dssp EEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTC-----HHHHHHHHHHTTCCEEEECHHHHTTSCTT---------
T ss_pred EEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcC-----HHHHHHHHHHcCCcEEEeCHHHHHHHHhc---------
Confidence 9999999999999888888999999999843221111 11122228999999999999998765321
Q ss_pred chhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccC
Q 005874 374 GLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYG 453 (672)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG 453 (672)
..+++|.+++||+++++++.+.++. .++++++||
T Consensus 291 --------------------------------------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG 324 (563)
T 1amu_A 291 --------------------------------------------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYG 324 (563)
T ss_dssp --------------------------------------------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEEC
T ss_pred --------------------------------------------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEEC
Confidence 0138999999999999999999887 478999999
Q ss_pred cccccccccccCCCC---CCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccC
Q 005874 454 LTETCAGGTFSEVDD---SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVD 530 (672)
Q Consensus 454 ~TE~~~~~~~~~~~~---~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~ 530 (672)
+||++..++...... ....++|.|+++++++|+| +++..+ +.|+.|||||+||+++.|||++|+.|++.|..+
T Consensus 325 ~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~---~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~ 400 (563)
T 1amu_A 325 PTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLK---SVGEAGELCIGGEGLARGYWKRPELTSQKFVDN 400 (563)
T ss_dssp CGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBC---CTTCEEEEEEEETTCCCEETTCHHHHHHHEEEC
T ss_pred cCHHhHhheeeecccccCCCCCcccceeCCCEEEEEC-CCcCCC---CCCCcEEEEEechhhChhhCCCchhhhhhcccC
Confidence 999987766543322 2456899999999999999 677654 478999999999999999999999999999643
Q ss_pred C--CCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEEcC
Q 005874 531 D--KGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVVAS 605 (672)
Q Consensus 531 ~--~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~~ 605 (672)
+ +++|||+|||+|++|+||.|+|+||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+++
T Consensus 401 ~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~ 479 (563)
T 1amu_A 401 PFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSE 479 (563)
T ss_dssp SSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEES
T ss_pred CCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeC
Confidence 2 35679999999999999999999999999998 6999999999999999999999999997654 3589999986
Q ss_pred hhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHH
Q 005874 606 QPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAF 663 (672)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~ 663 (672)
.....+... ..++++|+.|++|+.|+++++.| +|++||++|++|++.+
T Consensus 480 ~~~~~~~l~----~~l~~~L~~y~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 480 KHIPLEQLR----QFSSEELPTYMIPSYFIQLDKMP------LTSNGKIDRKQLPEPD 527 (563)
T ss_dssp SCCCHHHHH----HHHHHHSCGGGSCSEEEECSSCC------BCTTSSBCGGGSCCCC
T ss_pred CCCCHHHHH----HHHHhhCchhhCCcEEEEecccC------CCCCcChhHHhcCCcc
Confidence 543222222 56678999999999999999988 9999999999997643
No 17
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=4.5e-73 Score=624.72 Aligned_cols=486 Identities=21% Similarity=0.235 Sum_probs=406.4
Q ss_pred CCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEE
Q 005874 58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQL-GHKKEERVAI 136 (672)
Q Consensus 58 ~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~-g~~~g~~V~i 136 (672)
+|+.++|+++++++||++|+.+ +++ ++||+||.++++++|.+|.+. |.++|++|++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~------------~~~-----------~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i 57 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRS------------QGQ-----------SLTYQELWEQSDRAAAAIQKRISGEKKSPILV 57 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEE
T ss_pred CcHHHHHHHHHHHCCCCeEEEc------------CCc-----------eeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEE
Confidence 4789999999999999999986 444 799999999999999999885 8889999999
Q ss_pred EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcccc
Q 005874 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216 (672)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~ 216 (672)
+++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++...... ...
T Consensus 58 ~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------~~~---------------- 115 (511)
T 3e7w_A 58 YGHMEPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSID------AVG---------------- 115 (511)
T ss_dssp EESSCHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTT------CCC----------------
T ss_pred EecCCHHHHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccch------hcc----------------
Confidence 9999999999999999999999999999999999999999999999997643210 000
Q ss_pred cccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEE
Q 005874 217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYL 296 (672)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l 296 (672)
......++.++...............++++++|+|||||||.||||++||+++.+.+......+ .++++|+++
T Consensus 116 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l 188 (511)
T 3e7w_A 116 ------QQIQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-PVSGGKIFL 188 (511)
T ss_dssp ------CSSCEEEHHHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-TTTTTCEEE
T ss_pred ------cccceecHhhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-CCCccceEE
Confidence 1123455666665443333333446778999999999999999999999999999999888888 899999999
Q ss_pred EecChHhHHHHHHHHHHhHhCcEEeeC------CcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhh
Q 005874 297 AYLPLAHVLELVAENLIAGVGSAIGYG------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVD 370 (672)
Q Consensus 297 ~~~pl~h~~~~~~~~~~l~~G~~i~~~------~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~ 370 (672)
+++|++|.+++...+.++..|+++++. ++..+.+. ++++++|+++++|+++..++......
T Consensus 189 ~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~-- 255 (511)
T 3e7w_A 189 NQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEE-----------LKKSGLNVWTSTPSFVQMCLMDPGFS-- 255 (511)
T ss_dssp ECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHH-----------HHHHCCSEEEECHHHHHHHHTSTTCS--
T ss_pred EeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHH-----------HHHcCCcEEEecHHHHHHHHhccccc--
Confidence 999999999988888999999999983 34444444 99999999999999998876521100
Q ss_pred hcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCcee
Q 005874 371 AKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIG 449 (672)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~ 449 (672)
....+++|.+++||+++++++.+.+++.+ +++++
T Consensus 256 ---------------------------------------------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~ 290 (511)
T 3e7w_A 256 ---------------------------------------------QDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIF 290 (511)
T ss_dssp ---------------------------------------------TTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEE
T ss_pred ---------------------------------------------cccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEE
Confidence 11224899999999999999999999988 89999
Q ss_pred cccCcccccccccccCCC-----CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhh
Q 005874 450 QGYGLTETCAGGTFSEVD-----DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK 524 (672)
Q Consensus 450 ~~YG~TE~~~~~~~~~~~-----~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~ 524 (672)
+.||+||+++.++..... .....++|.|.++++++|+| +++..+ ++|+.|||+|+||+++.|||++|+.|+
T Consensus 291 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~---~~g~~GEl~v~g~~v~~GY~~~~~~t~ 366 (511)
T 3e7w_A 291 NTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD-EEGQPL---PEGEKGEIVIAGPSVSRGYLGEPELTE 366 (511)
T ss_dssp ECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEEC-TTSCBC---CTTCCEEEEEESTTSCCCBTTCHHHHH
T ss_pred eCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEEC-CCCCCC---CCCCceEEEEecCccChhhCCCcccch
Confidence 999999998776644322 23446799999999999999 677655 488999999999999999999999999
Q ss_pred hhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEE
Q 005874 525 EVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVAL 601 (672)
Q Consensus 525 ~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~ 601 (672)
+.|... ++++||+|||+|++ +||.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+
T Consensus 367 ~~f~~~-~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~ 443 (511)
T 3e7w_A 367 KAFFSH-EGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAA 443 (511)
T ss_dssp HHEEES-SSSEEEEEEEEEEE-ETTEEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEE
T ss_pred hhhcCC-CCCEEEeCCCeEEc-cCCeEEEEccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEE
Confidence 999532 14458999999999 59999999999999998 6999999999999999999999999987544 469999
Q ss_pred EEcChhHHHHH--HHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHH
Q 005874 602 VVASQPAVEEW--AAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADD 666 (672)
Q Consensus 602 v~~~~~~~~~~--~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~ 666 (672)
|+++++...+. ..+.....++++||.|++|+.++++++.| +|++|||+|++|++.+++.
T Consensus 444 vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP------~t~~GKi~R~~L~~~~~~~ 504 (511)
T 3e7w_A 444 IVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQ------MTANGKIDRKRIGEEVLVR 504 (511)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCC------BCTTSCBCHHHHHHHHHHH
T ss_pred EEeccccccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCC------CCCCcCccHHHHHhHHhhh
Confidence 99887532110 11111266778999999999999999988 9999999999999999864
No 18
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=3.4e-74 Score=641.64 Aligned_cols=480 Identities=24% Similarity=0.265 Sum_probs=313.7
Q ss_pred CCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 005874 55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV 134 (672)
Q Consensus 55 ~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V 134 (672)
+...+++++|+++++++||++|+.+ .++ .+||+||.++++++|++|+++|+++||+|
T Consensus 72 ~~~~~l~~~l~~~a~~~pd~~A~~~------------~~~-----------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V 128 (570)
T 4gr5_A 72 PAGACVHELFEAQAARAPDAVALLH------------EAD-----------ELTYGALNERANRLAHRLVGLGVAPGTLV 128 (570)
T ss_dssp CCSCCHHHHHHHHHHHCTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred CccCCHHHHHHHHHHHCCCCeEEEC------------CCC-----------cEeHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 4567999999999999999999986 333 79999999999999999999999999999
Q ss_pred EEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcc
Q 005874 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS 214 (672)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~ 214 (672)
+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++...... +.....+...+...
T Consensus 129 ~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~~-- 199 (570)
T 4gr5_A 129 GVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGR-------LTGTTTLYVEDEAA-- 199 (570)
T ss_dssp EEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTS-------SCSSEEEECCC-----
T ss_pred EEEeCCCHHHHHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhc-------ccCCcceeeecccc--
Confidence 999999999999999999999999999999999999999999999999999765332 22222222111100
Q ss_pred cccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcE
Q 005874 215 AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV 294 (672)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~ 294 (672)
.............++++++|+|||||||.||||++||+++++.+.. ...+ .++++|+
T Consensus 200 ---------------------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~d~ 256 (570)
T 4gr5_A 200 ---------------------SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYA-GFGPDEV 256 (570)
T ss_dssp -------------------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSS-CCSTTCE
T ss_pred ---------------------ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhc-CCCCCCE
Confidence 0011111223456899999999999999999999999999876544 2334 7889999
Q ss_pred EEEecChHhHHHHHHHHHHhHhCcEEeeCC-----cccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhh
Q 005874 295 YLAYLPLAHVLELVAENLIAGVGSAIGYGT-----PLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKV 369 (672)
Q Consensus 295 ~l~~~pl~h~~~~~~~~~~l~~G~~i~~~~-----~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~ 369 (672)
+++++|++|..+....+.++..|+++++.+ +..+.+. ++++++|++.++|+++..|.+.....
T Consensus 257 ~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~~l~~~~~~~- 324 (570)
T 4gr5_A 257 FLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIGEL-----------VARHGVTMLQLSASLFNFLVDEVPEA- 324 (570)
T ss_dssp EEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCHHHHHHH-----------HHHHTCCEEEEEHHHHHHHHHHCGGG-
T ss_pred EEEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHH-----------HHHcCCcEEEecHHHHHHHHhhchhh-
Confidence 999999999877777888999999999833 3333333 99999999999999999987632211
Q ss_pred hhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCce
Q 005874 370 DAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPI 448 (672)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v 448 (672)
.++||.+++||++++++..+.+...+ ++++
T Consensus 325 -------------------------------------------------~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l 355 (570)
T 4gr5_A 325 -------------------------------------------------FEGVRYAITGGEPASVPHVAKARRDHPALRL 355 (570)
T ss_dssp -------------------------------------------------GTTCSEEEEESSCCCHHHHHHHHHHCTTCEE
T ss_pred -------------------------------------------------CCCceEEEEecccCCHHHHHHHHHhCCCcEE
Confidence 13899999999999999988888776 8999
Q ss_pred ecccCcccccccccccCCC----CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhh
Q 005874 449 GQGYGLTETCAGGTFSEVD----DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK 524 (672)
Q Consensus 449 ~~~YG~TE~~~~~~~~~~~----~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~ 524 (672)
+++||+||+++.++..... .....++|.|+++++++|+| +++..+ +.|+.|||+|+||+++.|||++|+.|+
T Consensus 356 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~---~~G~~GEl~v~g~~v~~GY~~~~~~t~ 431 (570)
T 4gr5_A 356 GNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKPA---ANGALGELYVAGAGLAHGYVSRPALTA 431 (570)
T ss_dssp EEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEEC-TTSCBC---CTTCEEEEEEEETTCCCEETTCHHHHH
T ss_pred EEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEEC-CCCCCC---CCCCcEEEEEeecccchhcCCCchhhh
Confidence 9999999998776654322 22346799999999999999 676655 478999999999999999999999999
Q ss_pred hhcccC----CCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---Ce
Q 005874 525 EVYKVD----DKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SY 597 (672)
Q Consensus 525 ~~~~~~----~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~ 597 (672)
++|..+ .+++|||+|||+|++|+||.|+|+||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.
T Consensus 432 ~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~ 510 (570)
T 4gr5_A 432 ERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQ 510 (570)
T ss_dssp HHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC--------------------------------------------
T ss_pred cccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeE
Confidence 999744 235689999999999999999999999999997 6999999999999999999999999997654 46
Q ss_pred EEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHH
Q 005874 598 CVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKA 662 (672)
Q Consensus 598 ~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~ 662 (672)
++|+|++++...... .+.....++++|+.|++|+.++++++.| +|++|||+|++|++.
T Consensus 511 ~~a~vv~~~~~~~~~-~~~l~~~l~~~l~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 511 LVAYVVAERADAPPD-AAELRRHVAEALPAYMVPVECVPVDELP------RTPNGKLDRRALTGS 568 (570)
T ss_dssp -----------------------------------------------------------------
T ss_pred EEEEEEecCCCCCcC-HHHHHHHHHhhCccccCCcEEEEcccCC------CCCCcCcchHhhhcc
Confidence 899998865432211 1122267778999999999999999987 999999999999863
No 19
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.7e-73 Score=628.44 Aligned_cols=484 Identities=22% Similarity=0.238 Sum_probs=397.6
Q ss_pred CCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 005874 58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF 137 (672)
Q Consensus 58 ~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~ 137 (672)
+|+.++|+++++++||++|+.+ .++ .+||+||.++++++|.+|.++|+++|++|+++
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~------------~~~-----------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~ 57 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVW------------RDA-----------KITYKQLKEDSDALAHWISSEYPDDRSPIMVY 57 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEE
T ss_pred CcHHHHHHHHHHHCCCceEEEe------------CCc-----------eEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 4789999999999999999987 333 79999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCccccc
Q 005874 138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVS 217 (672)
Q Consensus 138 ~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~ 217 (672)
++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++..... ...+
T Consensus 58 ~~n~~e~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~------~~~~----------------- 114 (512)
T 3fce_A 58 GHMQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTV------TDLP----------------- 114 (512)
T ss_dssp ESSCHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCS------SCCS-----------------
T ss_pred eCCCHHHHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccc------cccc-----------------
Confidence 99999999999999999999999999999999999999999999999854321 0000
Q ss_pred ccccCCCeEEEeH---HHHHhccc-CCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCc
Q 005874 218 SVEQSGRWKITSF---ADVQILGR-ENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKD 293 (672)
Q Consensus 218 ~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d 293 (672)
..+... .++..... ..+.+.....++++++|+|||||||.||||++||+++++.+......+ +++++|
T Consensus 115 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~~~~~d 186 (512)
T 3fce_A 115 -------VRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-NLQTGQ 186 (512)
T ss_dssp -------SEEEETHHHHHHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-TCCSSC
T ss_pred -------cceechhhhhhhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-CCCCCC
Confidence 111111 22221111 112223445789999999999999999999999999999998888888 899999
Q ss_pred EEEEecChHhHHHHHHHHHHhHhCcEEeeC------CcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHH
Q 005874 294 VYLAYLPLAHVLELVAENLIAGVGSAIGYG------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRK 367 (672)
Q Consensus 294 ~~l~~~pl~h~~~~~~~~~~l~~G~~i~~~------~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~ 367 (672)
++++++|++|.+++...+.++..|+++++. ++..+.+. ++++++|++.++|+++..++.....
T Consensus 187 ~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~ 255 (512)
T 3fce_A 187 VFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFAS-----------LEQSDIQVWTSTPSFAEMCLMEASF 255 (512)
T ss_dssp EEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHH-----------HHHHCCCEEEECHHHHHHHTTSTTC
T ss_pred EEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHH-----------HHHcCCcEEEecHHHHHHHHhhccc
Confidence 999999999999998888999999999984 34444444 9999999999999999887642110
Q ss_pred hhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CC
Q 005874 368 KVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GA 446 (672)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~ 446 (672)
. ....+++|.+++||+++++++.+.+.+.+ ++
T Consensus 256 ~-----------------------------------------------~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~ 288 (512)
T 3fce_A 256 S-----------------------------------------------ESMLPNMKTFLFCGEVLPNEVARKLIERFPKA 288 (512)
T ss_dssp S-----------------------------------------------TTTSTTCCEEEECSSCCCHHHHHHHHHHCTTC
T ss_pred c-----------------------------------------------chhCccccEEEEecCcCCHHHHHHHHHHCCCC
Confidence 0 11224899999999999999999999988 89
Q ss_pred ceecccCcccccccccccCCC-----CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCch
Q 005874 447 PIGQGYGLTETCAGGTFSEVD-----DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEE 521 (672)
Q Consensus 447 ~v~~~YG~TE~~~~~~~~~~~-----~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~ 521 (672)
++++.||+||+++.++..... .....++|.|.++++++|+| +++..+ ++|+.|||+|+||+++.|||++|+
T Consensus 289 ~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~---~~g~~GEl~v~g~~v~~GY~~~~~ 364 (512)
T 3fce_A 289 TIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIA---PDGEKGEIVIVGPSVSVGYLGSPE 364 (512)
T ss_dssp EEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBC---CTTSCEEEEEESTTSCSCBTTCHH
T ss_pred EEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEEC-CCCCCC---CCCCeEEEEEeccccChhhcCCch
Confidence 999999999998776654332 22457899999999999999 676655 478999999999999999999999
Q ss_pred hhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeE
Q 005874 522 KTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYC 598 (672)
Q Consensus 522 ~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~ 598 (672)
.|++.|.. .+++|||+|||+|++ +||.|+|+||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.++. +.+
T Consensus 365 ~t~~~f~~-~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~ 441 (512)
T 3fce_A 365 LTEKAFTM-IDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYL 441 (512)
T ss_dssp HHHHHEEE-ETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEE
T ss_pred hhhhcccc-CCCCEEEeCCceEEe-cCCEEEEecccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEE
Confidence 99999832 126789999999999 79999999999999998 6999999999999999999999999986544 358
Q ss_pred EEEEEcChhHHHHH--HHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHH
Q 005874 599 VALVVASQPAVEEW--AAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADD 666 (672)
Q Consensus 599 va~v~~~~~~~~~~--~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~ 666 (672)
+|+|++++....+. ........++++|+.|++|+.++++++.| +|++||++|++|++.|+++
T Consensus 442 ~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP------~t~~GKi~R~~L~~~~~~~ 505 (512)
T 3fce_A 442 LAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIP------MTPNGKVDRKKLLSEVTAL 505 (512)
T ss_dssp EEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCC------BCTTSSBCHHHHHHHHHC-
T ss_pred EEEEecCCccccchhhhHHHHHHHHHhhCchhcCCeEEEEecccC------CCCCcChHHHHHHhhhhhc
Confidence 99999876431110 11111266779999999999999999988 9999999999999999763
No 20
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=6.7e-73 Score=626.34 Aligned_cols=495 Identities=24% Similarity=0.255 Sum_probs=395.1
Q ss_pred CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 005874 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (672)
Q Consensus 57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i 136 (672)
.+++.++|+++++ +||++|+.+ ++. .+||+||.++++++|++|+++|+++||+|++
T Consensus 23 ~~~~~~~l~~~~~-~p~~~A~~~------------~~~-----------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i 78 (529)
T 2v7b_A 23 FNFAAYLFRLNET-RAGKTAYID------------DTG-----------STTYGELEERARRFASALRTLGVHPEERILL 78 (529)
T ss_dssp CCHHHHHHHHTGG-GTTSEEEEC------------SSC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred eeHHHHHHHhhhc-cCCceEEEe------------CCC-----------CccHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 4569999999999 999999985 333 7999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCc-cEEEEecCCCccc
Q 005874 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTV-KHVICMDANIPSA 215 (672)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l-~~ii~~~~~~~~~ 215 (672)
+++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.+.....+.+ ..++.++.....
T Consensus 79 ~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 157 (529)
T 2v7b_A 79 VMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESE- 157 (529)
T ss_dssp ECCSSTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC-----
T ss_pred EcCCcHHHHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccc-
Confidence 999999999999999999999999999999999999999999999999998877666655444444 455554432110
Q ss_pred ccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHH-HHHHHHHHhhcCCCCCCcE
Q 005874 216 VSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNV-LATVSAVMTIVPDLGSKDV 294 (672)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l-~~~~~~~~~~~~~~~~~d~ 294 (672)
......++++...... ..+.....++++++|+|||||||.||||++||+++ .+........+ ++.++|+
T Consensus 158 --------~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-~~~~~d~ 227 (529)
T 2v7b_A 158 --------PRLAPLFEELIDAAAP-AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-GIAENDV 227 (529)
T ss_dssp ----------CCCBHHHHHHTSCC-CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-CCCTTCE
T ss_pred --------cccccchhhhhccCCC-cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-CCCCCcE
Confidence 0111246666543221 22233457799999999999999999999999999 55554444445 7889999
Q ss_pred EEEecChHhHHHHHH-HHHHhHhCcEEeeC----CcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhh
Q 005874 295 YLAYLPLAHVLELVA-ENLIAGVGSAIGYG----TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKV 369 (672)
Q Consensus 295 ~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~----~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~ 369 (672)
+++.+|++|.+++.. .+.++..|+++++. ++..+.+. ++++++|+++++|+++..+++...
T Consensus 228 ~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~--- 293 (529)
T 2v7b_A 228 VFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFAR-----------LVEHRPTVFYGVPTLYANMLVSPN--- 293 (529)
T ss_dssp EEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHH-----------HHHSCCSEEEECHHHHHHHHTCTT---
T ss_pred EEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHH-----------HHHhCCEEEEecHHHHHHHHhCcc---
Confidence 999999999999876 56789999999974 33334444 999999999999999988865210
Q ss_pred hhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCcee
Q 005874 370 DAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIG 449 (672)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~ 449 (672)
... ....++|.+++||+++++++.+.+++.++++++
T Consensus 294 --~~~------------------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~ 329 (529)
T 2v7b_A 294 --LPA------------------------------------------RADVAIRICTSAGEALPREIGERFTAHFGCEIL 329 (529)
T ss_dssp --CCC------------------------------------------GGGCCCCEEEECSSCCCHHHHHHHHHHHSCCEE
T ss_pred --ccc------------------------------------------ccCCceEEEEEcCCCCCHHHHHHHHHHhCCcee
Confidence 000 000279999999999999999999999999999
Q ss_pred cccCcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhccc
Q 005874 450 QGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV 529 (672)
Q Consensus 450 ~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~ 529 (672)
++||+||++.+.+.........+++|.|+++++++|+| +++..+ ++|+.|||+|+||+++.||+++|+.|.+.|
T Consensus 330 ~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~---~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-- 403 (529)
T 2v7b_A 330 DGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELRD-EAGHAV---PDGEVGDLYIKGPSAAVMYWNNREKSRATF-- 403 (529)
T ss_dssp EEEECTTTSSEEEECCTTCCCTTSCCEECTTCEEEEEC-TTSCBC---CTTSCEEEEEECTTCCCCBTTCHHHHHHHE--
T ss_pred eeEchhhcCceeeccccCCCccCCcccCCCCCEEEEEC-CCCCCC---CCCCccEEEEecCCcccccCCChHHHHHhh--
Confidence 99999999766555544455668999999999999999 777665 478999999999999999999999999999
Q ss_pred CCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCC--CCeEEEEEEcChh
Q 005874 530 DDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPF--HSYCVALVVASQP 607 (672)
Q Consensus 530 ~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~--~~~~va~v~~~~~ 607 (672)
.+|||+|||+|++++||.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++... .+.++|+|++.++
T Consensus 404 ---~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~ 479 (529)
T 2v7b_A 404 ---LGEWIRSGDKYCRLPNGCYVYAGRSDDMLKV-SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKRE 479 (529)
T ss_dssp ---ETTEEEEEEEEEECTTSCEEEEEEGGGCBC-----CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTT
T ss_pred ---hcCCcccCceEEECCCccEEEeCccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCC
Confidence 5789999999999999999999999999997 699999999999999999999999999722 2458999998764
Q ss_pred HH--HHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHH
Q 005874 608 AV--EEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRK 661 (672)
Q Consensus 608 ~~--~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~ 661 (672)
.. ..... .....++++|+.|++|+.|+++++.| +|++||++|++|++
T Consensus 480 ~~~~~~~~~-~l~~~l~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 480 FAPSEILAE-ELKAFVKDRLAPHKYPRDIVFVDDLP------KTATGKIQRFKLRE 528 (529)
T ss_dssp CCCCHHHHH-HHHHHHHTTSCTTTSCSEEEEESCCC------BCTTSCBCHHHHHC
T ss_pred CCcchhHHH-HHHHHHHhhcchhhCCeEEEEeccCC------CCCccchhHHhHhh
Confidence 31 11111 11266779999999999999999987 99999999999985
No 21
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=1.4e-72 Score=634.19 Aligned_cols=499 Identities=18% Similarity=0.234 Sum_probs=411.9
Q ss_pred CCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 005874 55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV 134 (672)
Q Consensus 55 ~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V 134 (672)
....|+.++|+++++ ||++|+.+ .++ .+||+||.++++++|++|+++|+++|++|
T Consensus 24 ~~~~~l~~~~~~~a~--pd~~Av~~------------~~~-----------~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V 78 (617)
T 3rg2_A 24 WQDLPLTDILTRHAA--SDSIAVID------------GER-----------QLSYRELNQAADNLACSLRRQGIKPGETA 78 (617)
T ss_dssp CCCCCTTHHHHTTTT--CCSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred CCcCCHHHHHHHhhC--CCCeEEec------------CCc-----------eEeHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 455899999999987 99999986 333 79999999999999999999999999999
Q ss_pred EEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccch-----HHHHhhhcCCCCccEEEEec
Q 005874 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL-----KKLVDLSGQLDTVKHVICMD 209 (672)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~~~~~~l~~ii~~~ 209 (672)
+++++|++++++++|||+++|+++||+++.++.+++.++++++++++++++.... ..+.......+.++.+...+
T Consensus 79 ~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (617)
T 3rg2_A 79 LVQLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLN 158 (617)
T ss_dssp EEECCSSHHHHHHHHHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEET
T ss_pred EEECCCcHHHHHHHHHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecc
Confidence 9999999999999999999999999999999999999999999999999987654 33333334445555565554
Q ss_pred CCCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCC
Q 005874 210 ANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL 289 (672)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~ 289 (672)
..... .+.+....... ........++++++|+|||||||.||||+++|+++++.+......+ ++
T Consensus 159 ~~~~~--------------~~~~~~~~~~~-~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-~~ 222 (617)
T 3rg2_A 159 DSGEH--------------NLQDAINHPAE-DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-QF 222 (617)
T ss_dssp CCSTT--------------BHHHHHHSCCS-SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TC
T ss_pred ccccc--------------chhhhhccccc-ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-CC
Confidence 43211 12333322221 2223455679999999999999999999999999999999988888 89
Q ss_pred CCCcEEEEecChHhHHHHHH--HHHHhHhCcEEeeCC---cccccCchhhhhcccccccccccceeeecchHHHHHHHHH
Q 005874 290 GSKDVYLAYLPLAHVLELVA--ENLIAGVGSAIGYGT---PLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDG 364 (672)
Q Consensus 290 ~~~d~~l~~~pl~h~~~~~~--~~~~l~~G~~i~~~~---~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~ 364 (672)
.++|++++++|++|.+++.. .+.++..|+++++.+ +..+.+. ++++++|++.++|+++..+.+.
T Consensus 223 ~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~ 291 (617)
T 3rg2_A 223 TQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPL-----------IEKHQVNVTALVPPAVSLWLQA 291 (617)
T ss_dssp CTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHTTCCEEEECHHHHHHHHHH
T ss_pred CCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHH-----------HHHhCCcEEEcchHHHHHHHHh
Confidence 99999999999999999875 778899999999933 3333333 8999999999999999998875
Q ss_pred HHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh
Q 005874 365 VRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL 444 (672)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~ 444 (672)
....... ...++||.+++||+++++++.+.+...+
T Consensus 292 ~~~~~~~---------------------------------------------~~l~~lr~i~~gGe~l~~~~~~~~~~~~ 326 (617)
T 3rg2_A 292 LIEGESR---------------------------------------------AQLASLKLLQVGGARLSATLAARIPAEI 326 (617)
T ss_dssp HHTTCCT---------------------------------------------TTTTTCCEEEEESSCCCHHHHHHHHHHT
T ss_pred hhccccc---------------------------------------------ccCCCccEEEEcCCcCCHHHHHHHHHHh
Confidence 4332110 0113899999999999999999999999
Q ss_pred CCceecccCcccccccccccCCCC-CCCCccCCCc-CCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchh
Q 005874 445 GAPIGQGYGLTETCAGGTFSEVDD-SSVGRVGAPL-PCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEK 522 (672)
Q Consensus 445 ~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~~G~p~-~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~ 522 (672)
+++++|.||+||++..++...... ....++|.|+ ++++++|+| +++..+ +.|+.|||||+|+++++||+++|+.
T Consensus 327 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~---p~G~~GEl~i~G~~v~~GY~~~p~~ 402 (617)
T 3rg2_A 327 GCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVAD-AEGNPL---PQGEVGRLMTRGPYTFRGYYKSPQH 402 (617)
T ss_dssp CSEEEEEEEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEEC-TTSCBC---CTTCCEEEEEECSSSCSCCTTCHHH
T ss_pred CCcEEEEeccCcceeecccCCCcccccccCCCccCCCCceEEEEC-CCCCCC---CCCCceEEEecCccccchhcCChhh
Confidence 999999999999986544322211 1235789997 788999999 777655 5889999999999999999999999
Q ss_pred hhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEE
Q 005874 523 TKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCV 599 (672)
Q Consensus 523 t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~v 599 (672)
|+++|. .+|||+|||+|++++||.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++..++ +.++
T Consensus 403 t~~~f~----~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~ 477 (617)
T 3rg2_A 403 NASAFD----ANGFYCSGDLISIDPEGYITVQGREKDQINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSC 477 (617)
T ss_dssp HHHHBC----TTSCEEEEEEEEECTTSCEEEEEECSSEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEE
T ss_pred hhhccC----CCCceecCceEEEcCCceEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEE
Confidence 999998 8899999999999999999999999999997 5999999999999999999999999987544 4688
Q ss_pred EEEEcChhHHHHHHHHcChhhhhc-CCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHHHHh
Q 005874 600 ALVVASQPAVEEWAAKQGIVGKNA-RLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLAR 669 (672)
Q Consensus 600 a~v~~~~~~~~~~~~~~~~~~~~~-~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~i~~ 669 (672)
|++++.+........ ..+.+ .||.|++|..+++++..| +|++||++|++|++.+.+....
T Consensus 478 a~vv~~~~~~~~~l~----~~l~~~~lp~~~vP~~~~~v~~lP------~t~~GKidR~~L~~~~~~~~~~ 538 (617)
T 3rg2_A 478 AYLVVKEPLRAVQVR----RFLREQGIAEFKLPDRVECVDSLP------LTAVGKVDKKQLRQWLASRASA 538 (617)
T ss_dssp EEEEESSCCCHHHHH----HHHHTTTCCGGGSCSEEEECSCCC------BCTTSSBCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHH----HHHHhCCCccccCCcEEEEecccC------CCCCCCCcHHHHHHHHhccccc
Confidence 998887643222222 44445 799999999999999988 9999999999999999876543
No 22
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=7e-73 Score=625.27 Aligned_cols=492 Identities=20% Similarity=0.206 Sum_probs=394.5
Q ss_pred CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 005874 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (672)
Q Consensus 57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i 136 (672)
..|+.++|++.++++||++|+.+ .|+ .+||+||.++++++|.+|.++|+++|++|++
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~------------~~~-----------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i 59 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDC------------LGE-----------RRTYGQLKRDSDSIAAFIDSLALLAKSPVLV 59 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEE
T ss_pred HHHHHHHHHHHHHHCCCCcceec------------CCC-----------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 46899999999999999999986 444 7999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcccc
Q 005874 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216 (672)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~ 216 (672)
+++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+
T Consensus 60 ~~~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~------------------------ 115 (521)
T 3l8c_A 60 FGAQTYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI------------------------ 115 (521)
T ss_dssp EECSSHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC------------------------
T ss_pred EeCCCHHHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccc------------------------
Confidence 99999999999999999999999999999999999999999999999987643211
Q ss_pred cccccCCCeEEEeHHHHHhccc--CCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhh--cCCCCCC
Q 005874 217 SSVEQSGRWKITSFADVQILGR--ENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI--VPDLGSK 292 (672)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~--~~~~~~~ 292 (672)
.......+.++..... ..........++++++|+|||||||.||||++||+|+++.+...... + .+..+
T Consensus 116 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~~ 188 (521)
T 3l8c_A 116 ------EGISLVSLSEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAF-DVPKQ 188 (521)
T ss_dssp ------TTSEEEEHHHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTT-CCCSS
T ss_pred ------ccCcccchhhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcccc-CCCCC
Confidence 1123344444433221 11122345678999999999999999999999999999988776665 4 78899
Q ss_pred cEEEEecChHhHHHHHHHHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhc
Q 005874 293 DVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAK 372 (672)
Q Consensus 293 d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~ 372 (672)
+++++..|++|..++...+.++..|+++++.+.....+ ...+...++++++|++.++|+++..+.......
T Consensus 189 ~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~-----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---- 259 (521)
T 3l8c_A 189 PQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVAD-----FKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFC---- 259 (521)
T ss_dssp CEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTC-----HHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCS----
T ss_pred CeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhC-----HHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccc----
Confidence 99999999999999888888999999999843221111 111222389999999999999998776421100
Q ss_pred CchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCceecc
Q 005874 373 GGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQG 451 (672)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~ 451 (672)
....+++|.+++||+++++++.+.+.+.+ +++++++
T Consensus 260 -------------------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~ 296 (521)
T 3l8c_A 260 -------------------------------------------QAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINA 296 (521)
T ss_dssp -------------------------------------------TTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEE
T ss_pred -------------------------------------------cccCccceEEEEecccCCHHHHHHHHHHCCCceEEeC
Confidence 01124899999999999999999998887 8999999
Q ss_pred cCcccccccccccCCC-----CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhh
Q 005874 452 YGLTETCAGGTFSEVD-----DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEV 526 (672)
Q Consensus 452 YG~TE~~~~~~~~~~~-----~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~ 526 (672)
||+||+++.++..... ....+++|.|+++++++|+| +++..+ +.|+.|||+|+||+++.|||++|+.|++.
T Consensus 297 YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~---~~g~~GEl~v~g~~v~~GY~~~~~~t~~~ 372 (521)
T 3l8c_A 297 YGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKEL---SSGEQGEIIVTGPAVSKGYLNNPEKTAEA 372 (521)
T ss_dssp ECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBC---CTTCCEEEEEESTTSCSCBTTCHHHHHHH
T ss_pred cCccHHhhhhceeecccccccCCCccccccccCCCEEEEEC-CCcCCC---CCCCceEEEecccccChhhcCCchHhhcc
Confidence 9999998776654322 23456899999999999999 777665 47899999999999999999999999999
Q ss_pred cccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC----CeEEEEE
Q 005874 527 YKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH----SYCVALV 602 (672)
Q Consensus 527 ~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~----~~~va~v 602 (672)
|... +++|||+|||+|++|+||.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++..+. +.++|+|
T Consensus 373 f~~~-~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~v 450 (521)
T 3l8c_A 373 FFTF-KGQPAYHTGDIGSLTEDNILLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYI 450 (521)
T ss_dssp EEEE-TTEEEEEEEEEEEECSSSCEEEEEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEE
T ss_pred CcCC-CCceeeeCCCEEEEeCCCeEEEeCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEE
Confidence 8421 26789999999999999999999999999998 5999999999999999999999999986533 3589999
Q ss_pred EcChhHHHH-----HHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHH
Q 005874 603 VASQPAVEE-----WAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADD 666 (672)
Q Consensus 603 ~~~~~~~~~-----~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~ 666 (672)
+++++...+ ...+.....++++|+.|++|+.|+++++.| +|++|||+|++|+++|+++
T Consensus 451 v~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP------~t~~GKidr~~L~~~~~~~ 513 (521)
T 3l8c_A 451 VVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLP------LTPNGKIDIKTLINEVNNR 513 (521)
T ss_dssp EECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCC------BCTTSSBCHHHHHHHTC--
T ss_pred EecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccC------CCCCcCccHHHHhhhhhcC
Confidence 988753211 011111266778999999999999999988 9999999999999998764
No 23
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1.3e-72 Score=631.78 Aligned_cols=475 Identities=17% Similarity=0.164 Sum_probs=385.4
Q ss_pred CCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 005874 55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV 134 (672)
Q Consensus 55 ~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V 134 (672)
....|+.++|+++++++||++|+.+ .+. .+||+||.++++++|++|+++|+++|++|
T Consensus 24 ~~~~tl~~~~~~~a~~~Pd~~Av~~------------~~~-----------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V 80 (620)
T 4dg8_A 24 YAHPTVVARFSEMAALHPHREAIRD------------RFG-----------SVDYRQLLDSAEQLSDYLLEHYPQPGVCL 80 (620)
T ss_dssp GGSCCHHHHHHHHHHHCTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHHCCSSCCEE
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEc------------CCC-----------cCcHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 3457999999999999999999986 333 79999999999999999999999999999
Q ss_pred EEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcc
Q 005874 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS 214 (672)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~ 214 (672)
+|+++|++++++++|||+++|+++||+++.++.+++.++++++++++++++....... ..+..+
T Consensus 81 ~i~~~~s~~~vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~-------~~~~~~--------- 144 (620)
T 4dg8_A 81 GVYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA-------NGLPCV--------- 144 (620)
T ss_dssp EEESSSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC-------TTSCEE---------
T ss_pred EEEeCCCHHHHHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc-------cCCcee---------
Confidence 9999999999999999999999999999999999999999999999999765432210 111110
Q ss_pred cccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcE
Q 005874 215 AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV 294 (672)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~ 294 (672)
.+.... ............++++++|+|||||||.||||+++|+++.+.+.. ...+ .+.++|+
T Consensus 145 --------------~~~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~d~ 206 (620)
T 4dg8_A 145 --------------PVRHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-AFAPQMR 206 (620)
T ss_dssp --------------EGGGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-TTCTTCE
T ss_pred --------------eeccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-CCCCCCE
Confidence 010000 001111223346799999999999999999999999999877655 3345 7899999
Q ss_pred EEEecChHhHHHHHHHHHHhHhCcEEeeC-----CcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhh
Q 005874 295 YLAYLPLAHVLELVAENLIAGVGSAIGYG-----TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKV 369 (672)
Q Consensus 295 ~l~~~pl~h~~~~~~~~~~l~~G~~i~~~-----~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~ 369 (672)
+++++|++|..++..++.++..|+++++. ++..+.+. ++++++|+++++|+++..+.+....
T Consensus 207 ~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~Ps~~~~l~~~~~~-- 273 (620)
T 4dg8_A 207 FLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQL-----------IGERGADSAWLTASLFNTLVDLDPD-- 273 (620)
T ss_dssp EEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHHHH-----------HHTTCCCEEEEEHHHHHHHHHHCGG--
T ss_pred EEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHHHH-----------HHHhCCcEEEccHHHHHHHHhcChh--
Confidence 99999999999999899999999999984 23333333 8999999999999999988752110
Q ss_pred hhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCce
Q 005874 370 DAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPI 448 (672)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v 448 (672)
..++||.+++||++++++..+.+...+ ++++
T Consensus 274 ------------------------------------------------~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l 305 (620)
T 4dg8_A 274 ------------------------------------------------CLGGLRQLLTGGDILSVPHVRRALLRHPRLHL 305 (620)
T ss_dssp ------------------------------------------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEE
T ss_pred ------------------------------------------------hCCCccEEEEEeCcCCHHHHHHHHHhCCCeEE
Confidence 113899999999999988877776654 8999
Q ss_pred ecccCcccccccccccCCC----CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhh
Q 005874 449 GQGYGLTETCAGGTFSEVD----DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK 524 (672)
Q Consensus 449 ~~~YG~TE~~~~~~~~~~~----~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~ 524 (672)
+|.||+||++..++..... .....++|.|+++++++|+| +++... ++.|..|||||+|+++++||+++|+.|+
T Consensus 306 ~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~--~~~g~~GEl~i~G~~v~~GY~~~p~~t~ 382 (620)
T 4dg8_A 306 VNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLD-EHGQEI--AEPDRAGEIVAFGAGLAQGYRNDAARTR 382 (620)
T ss_dssp EEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEEC-TTSCBC--CSSSCCEEEEEEETTCCSEETTCHHHHH
T ss_pred EeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEEC-ccCCCC--CCCCCceEEEEeccccccccCCChhhhh
Confidence 9999999998876654322 23447899999999999999 666653 3578999999999999999999999999
Q ss_pred hhcccCCCC-C--ceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCCC--eEE
Q 005874 525 EVYKVDDKG-M--RWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHS--YCV 599 (672)
Q Consensus 525 ~~~~~~~~~-~--gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~~--~~v 599 (672)
++|..++.. . +||+|||+|++++||.|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++..+.. .++
T Consensus 383 ~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv 461 (620)
T 4dg8_A 383 ASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLL 461 (620)
T ss_dssp HHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEE
T ss_pred hhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEE
Confidence 999744321 1 79999999999999999999999999998 69999999999999999999999999976553 466
Q ss_pred EEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHH
Q 005874 600 ALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFAD 665 (672)
Q Consensus 600 a~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~ 665 (672)
++++....... ..+.++||.|++|+.+++++..| +|++||++|++|++.|.+
T Consensus 462 ~~~~~~~~~~~--------~~l~~~Lp~y~~P~~~~~v~~lP------~t~~GKidR~~L~~~~~~ 513 (620)
T 4dg8_A 462 CAWTGKADASP--------QALLRQLPTWQRPHACVRVEALP------LTAHGKLDRAALLRRLEE 513 (620)
T ss_dssp EEEEECTTCCC--------HHHHHHSCGGGSCSEEEECSSCC------CC----CCHHHHHHHTCS
T ss_pred EEEecChHHHH--------HHHHHhChhhcCCcEEEEECcCC------CCcccCHhHHHHhhcccc
Confidence 66665433221 44557899999999999999988 999999999999988754
No 24
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=4.9e-73 Score=670.61 Aligned_cols=515 Identities=24% Similarity=0.283 Sum_probs=336.7
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCC
Q 005874 53 SWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEE 132 (672)
Q Consensus 53 ~~~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~ 132 (672)
+.|...|++++|+++++++||++|+.+.+ +|+ .+||+||.++++++|++|+++|+++||
T Consensus 56 ~~p~~~tl~~~l~~~a~~~pd~~Al~~~~----------~~~-----------~~TY~eL~~~~~~lA~~L~~~Gv~~gd 114 (979)
T 3tsy_A 56 YIPNHLSLHDYIFQNISEFATKPCLINGP----------TGH-----------VYTYSDVHVISRQIAANFHKLGVNQND 114 (979)
T ss_dssp CCCTTSCHHHHHTTTGGGTTTSEEEEETT----------TCC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTC
T ss_pred CCCCCCCHHHHHHHHHHhCCCCeEEEECC----------CCc-----------EEEHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 34666899999999999999999998621 233 799999999999999999999999999
Q ss_pred EEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCC
Q 005874 133 RVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANI 212 (672)
Q Consensus 133 ~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~ 212 (672)
+|+|+++|+++|++++|||+++|+++||++|.++++++.+++++++++++|++.+..+.+....... .+ .++.++...
T Consensus 115 ~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~-~~~~~~~~~ 192 (979)
T 3tsy_A 115 VVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD-GV-VIVCIDDNE 192 (979)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS-CC-EEEECCCCT
T ss_pred EEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC-Cc-eEEEeCCcc
Confidence 9999999999999999999999999999999999999999999999999999988776665554332 22 344444321
Q ss_pred cccccccccCCCeEEEeHHHHHhcccC--CCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhc---C
Q 005874 213 PSAVSSVEQSGRWKITSFADVQILGRE--NPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV---P 287 (672)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~---~ 287 (672)
... ......+|.++...... ...+.....++++++|+|||||||.||||++||+++++.+....... .
T Consensus 193 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~ 265 (979)
T 3tsy_A 193 SVP-------IPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNL 265 (979)
T ss_dssp TSC-------CCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSS
T ss_pred ccc-------CCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccc
Confidence 110 01123455555433222 12233456789999999999999999999999999999887765422 1
Q ss_pred CCCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEeeC---CcccccCchhhhhcccccccccccceeeecchHHHHHHHH
Q 005874 288 DLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYG---TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRD 363 (672)
Q Consensus 288 ~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~---~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~ 363 (672)
.+.++|++++++|++|.+++.. .+.++..|+++++. ++..+.+. ++++++|++.++|+++..+.+
T Consensus 266 ~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~ 334 (979)
T 3tsy_A 266 YFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLEL-----------IQRCKVTVAPMVPPIVLAIAK 334 (979)
T ss_dssp CCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHHTCCEEEECHHHHHHHHH
T ss_pred cCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHH-----------HHHhCCeEEEcHHHHHHHHHh
Confidence 6789999999999999999866 67789999999993 44444444 999999999999999998876
Q ss_pred HHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHH
Q 005874 364 GVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC 443 (672)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~ 443 (672)
..... ....++||.+++||+++++++.+.+++.
T Consensus 335 ~~~~~-----------------------------------------------~~~l~~lr~~~~gg~~l~~~~~~~~~~~ 367 (979)
T 3tsy_A 335 SSETE-----------------------------------------------KYDLSSIRVVKSGAAPLGKELEDAVNAK 367 (979)
T ss_dssp CGGGG-----------------------------------------------TSCCTTCCEEEESSCCCCSSHHHHHHHH
T ss_pred Ccccc-----------------------------------------------CCCccceEEEEEcCCCCCHHHHHHHHHH
Confidence 32111 1122489999999999999999999998
Q ss_pred h-CCceecccCcccccccccccC-----CCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCccccccc
Q 005874 444 L-GAPIGQGYGLTETCAGGTFSE-----VDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYF 517 (672)
Q Consensus 444 ~-~~~v~~~YG~TE~~~~~~~~~-----~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~ 517 (672)
+ +++++++||+||++++++... ......+++|.|+++++++|+|++++..+ ++|+.|||+|+||++++|||
T Consensus 368 ~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~---~~g~~GEl~i~g~~v~~GY~ 444 (979)
T 3tsy_A 368 FPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSL---SRNQPGEICIRGHQIMKGYL 444 (979)
T ss_dssp CTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBC---CTTCCEEEEEESTTSCSEET
T ss_pred CCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCC---CCCCccEEEEECCCcccccc
Confidence 8 899999999999987655431 22335588999999999999995556554 47899999999999999999
Q ss_pred CCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC--
Q 005874 518 KNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH-- 595 (672)
Q Consensus 518 ~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~-- 595 (672)
++|+.|++.|+ .+|||+|||+|++++||.|+|+||+||+||+ +|++|+|.+||++|.+||+|.+++|++.+++
T Consensus 445 ~~p~~t~~~f~----~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~ 519 (979)
T 3tsy_A 445 NNPAATAETID----KDGWLHTGDIGLIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAA 519 (979)
T ss_dssp TCHHHHHHHBC----TTSCEEEEEEEEECTTSCEEEEEESCC--------------------------------------
T ss_pred CChhhhhhhcc----CCCcEEcCCEEEEcCCceEEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCC
Confidence 99999999998 8899999999999999999999999999998 6999999999999999999999999997654
Q ss_pred -CeEEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHHHHhhh
Q 005874 596 -SYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLY 671 (672)
Q Consensus 596 -~~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~i~~ly 671 (672)
+.++|+|++.++...+.. .....++++|+.|++|+.++++++.| +|++||++|++|++.|.+.+...|
T Consensus 520 g~~~~a~vv~~~~~~~~~~--~l~~~l~~~l~~~~~p~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~~~~~~ 588 (979)
T 3tsy_A 520 GEVPVAFVVKSKDSELSED--DVKQFVSKQVVFYKRINKVFFTESIP------KAPSGKILRKDLRAKLANGLGSGM 588 (979)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CcEEEEEEEECCCCCCCHH--HHHHHHHHhcccccCCeEEEEeCCcC------cCCCCCeeHHHHHHHHHhhcCCcc
Confidence 358999998766433322 22267788999999999999999987 999999999999999998887665
No 25
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=3.8e-72 Score=616.34 Aligned_cols=488 Identities=19% Similarity=0.250 Sum_probs=370.8
Q ss_pred CHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEc
Q 005874 59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFA 138 (672)
Q Consensus 59 tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~ 138 (672)
|+.++|+++++++||++|+.+ .++ .+||+||.++++++|.+|+++ +||+|++++
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~------------~~~-----------~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~ 55 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITD------------GQE-----------SYTYQNLYCEASLLAKRLKAY---QQSRVGLYI 55 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEEC------------SSC-----------EEEHHHHHHHHHHHHHHHHTT---CCSEEEEEC
T ss_pred CHHHHHHHHHHhcCCceEEEe------------CCc-----------EEEHHHHHHHHHHHHHHHHHc---CCCEEEEEc
Confidence 677899999999999999985 333 799999999999999999987 899999999
Q ss_pred CCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcccccc
Q 005874 139 DTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSS 218 (672)
Q Consensus 139 ~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~ 218 (672)
+|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+.......... .+.+..+........ .
T Consensus 56 ~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~--- 130 (501)
T 3ipl_A 56 DNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS-LDDIEFAGRDITTNG-L--- 130 (501)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE-TTC-----------------
T ss_pred CCCHHHHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc-cccceeeeeeccccc-c---
Confidence 99999999999999999999999999999999999999999999999875443221110 111111111000000 0
Q ss_pred cccCCCeEEE-eHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEEE
Q 005874 219 VEQSGRWKIT-SFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLA 297 (672)
Q Consensus 219 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~ 297 (672)
.......... ..+.+...............++++++|+|||||||.||||++||+++++.+......+ +++++|++++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-~~~~~d~~l~ 209 (501)
T 3ipl_A 131 LDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-GFDRDTNWLS 209 (501)
T ss_dssp -------------------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-CCCTTCEEEE
T ss_pred cccccccccccchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-CCCccCEEEE
Confidence 0000000000 0011111011011122345689999999999999999999999999999999888888 8999999999
Q ss_pred ecChHhHHHHHHHHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCc
Q 005874 298 YLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGG 374 (672)
Q Consensus 298 ~~pl~h~~~~~~~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~ 374 (672)
++|++|.+++...+.++..|+++++ +++..+.+. ++++++|+++++|+++..|.+.....
T Consensus 210 ~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~------ 272 (501)
T 3ipl_A 210 VLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTM-----------IKNERITHISLVPQTLNWLMQQGLHE------ 272 (501)
T ss_dssp CSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHSCCCEEEECHHHHHHHHHHTCCS------
T ss_pred eCcHHHHHHHHHHHHHHHcCceEEeCCCCCHHHHHHH-----------HHHcCCcEEEchHHHHHHHHhcCCCC------
Confidence 9999999999888889999999999 345555555 99999999999999999887632100
Q ss_pred hhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccCc
Q 005874 375 LSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGL 454 (672)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~ 454 (672)
..+||.+++||+++++++.+.++. +++++++.||+
T Consensus 273 --------------------------------------------~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~ 307 (501)
T 3ipl_A 273 --------------------------------------------PYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGM 307 (501)
T ss_dssp --------------------------------------------CTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEE
T ss_pred --------------------------------------------cCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccc
Confidence 017999999999999999999887 59999999999
Q ss_pred ccccccccccCCC--CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCC
Q 005874 455 TETCAGGTFSEVD--DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDK 532 (672)
Q Consensus 455 TE~~~~~~~~~~~--~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~ 532 (672)
||+++.++..... ....+++|.|+++++++|+| ++ +++.|||+|+|+++++||+++|+.|.. |
T Consensus 308 TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~--------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~----- 372 (501)
T 3ipl_A 308 TETCSQFLTATPEMLHARPDTVGMPSANVDVKIKN-PN--------KEGHGELMIKGANVMNGYLYPTDLTGT-F----- 372 (501)
T ss_dssp GGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEES-CC--------SSCCEEEEEESTTSCSCCSBSTTCCCS-E-----
T ss_pred cccccceeecCccccccCCCCCCCCCCCcEEEEec-CC--------CCCccEEEEeccchhhhhCcChhhcch-h-----
Confidence 9998755443332 23557899999999999999 32 346799999999999999999999987 5
Q ss_pred CCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCCC---eEEEEEEcChhHH
Q 005874 533 GMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHS---YCVALVVASQPAV 609 (672)
Q Consensus 533 ~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~~---~~va~v~~~~~~~ 609 (672)
.+|||+|||+|++++||.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++. .++++|++.....
T Consensus 373 ~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~ 451 (501)
T 3ipl_A 373 ENGYFNTGDIAEIDHEGYVMIYDRRKDLIIS-GGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDIS 451 (501)
T ss_dssp ETTEEEEEEEEEECTTSCEEEEEECCCCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCC
T ss_pred cCCceecCCEEEEcCCCeEEEEccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCCC
Confidence 6899999999999999999999999999996 69999999999999999999999999976553 5788888765433
Q ss_pred HHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHH
Q 005874 610 EEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADD 666 (672)
Q Consensus 610 ~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~ 666 (672)
.+... ..++++|+.|++|+.|+++++.| +|++||++|++|++.+++.
T Consensus 452 ~~~l~----~~l~~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 452 KAQLI----AYLSKHLAKYKVPKHFEKVDTLP------YTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp HHHHH----HHHHHHSCGGGSCSEEEECSSCC-------------------------
T ss_pred HHHHH----HHHHhhCccccCCCEEEEecccC------CCCCCCEeHHHHhhccccc
Confidence 33222 66678999999999999999988 9999999999999988764
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=3e-72 Score=616.25 Aligned_cols=473 Identities=24% Similarity=0.321 Sum_probs=372.7
Q ss_pred CCCCHHHHHHHHHHHcCC-CCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 005874 56 GISTLAELFEQSCKEHGD-KYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV 134 (672)
Q Consensus 56 ~~~tl~~~~~~~a~~~pd-~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V 134 (672)
.+.|+.++|.++++++|+ ++|+.+ +++ .+||+||.++++++|.+|. .|++|
T Consensus 20 ~~~tl~~~l~~~a~~~p~d~~Al~~------------~~~-----------~~Ty~eL~~~~~~~A~~L~-----~~~~V 71 (505)
T 3nyq_A 20 HMSSLFPALSPAPTGAPADRPALRF------------GER-----------SLTYAELAAAAGATAGRIG-----GAGRV 71 (505)
T ss_dssp ----CCTTTSSCCCSGGGGSEEEEE------------TTE-----------EEEHHHHHHHHHHHHTTCC--------CE
T ss_pred ccchhHHHHHHHHHhCCCCCeEEEE------------CCe-----------eeeHHHHHHHHHHHHhhcc-----CCCEE
Confidence 467888999999999887 999986 443 7999999999999998875 38899
Q ss_pred EEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcc
Q 005874 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS 214 (672)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~ 214 (672)
+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+... ......+..+.. +.
T Consensus 72 ~i~~~~~~~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~-~~---- 141 (505)
T 3nyq_A 72 AVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL-----PPALGALERVDV-DV---- 141 (505)
T ss_dssp EEECCSSHHHHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC-----CGGGTTSEEEEC-CT----
T ss_pred EEEcCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc-----chhhcccccccc-cc----
Confidence 99999999999999999999999999999999999999999999999999865210 001111211111 00
Q ss_pred cccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcE
Q 005874 215 AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV 294 (672)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~ 294 (672)
......+.....++++++|+|||||||.||||++||+++++.+..+...+ .++++|+
T Consensus 142 ----------------------~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~ 198 (505)
T 3nyq_A 142 ----------------------RARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-QWTGEDV 198 (505)
T ss_dssp ----------------------TCCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-TCCTTCE
T ss_pred ----------------------ccccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-CCCCCcE
Confidence 00111223445678999999999999999999999999999999988888 8999999
Q ss_pred EEEecChHhHHHHHH-HHHHhHhCcEEeeC---CcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhh
Q 005874 295 YLAYLPLAHVLELVA-ENLIAGVGSAIGYG---TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVD 370 (672)
Q Consensus 295 ~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~---~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~ 370 (672)
+++.+|++|..++.. .+.++..|+++++. ++..+.+. + ++++|+++++|+++..+.+.......
T Consensus 199 ~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i-~~~~t~~~~~P~~~~~l~~~~~~~~~ 266 (505)
T 3nyq_A 199 LVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARE-----------L-NDGATMLFGVPTMYHRIAETLPADPE 266 (505)
T ss_dssp EEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHH-----------H-TTTCCEEEECHHHHHHHHHHGGGCHH
T ss_pred EEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHHH-----------H-hhCCeEEEehHHHHHHHHHhhhcCch
Confidence 999999999999876 77889999999983 33333333 6 67999999999999998874322110
Q ss_pred hcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceec
Q 005874 371 AKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQ 450 (672)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~ 450 (672)
. ....+++|.+++||+++++++.+.++..+++++++
T Consensus 267 ~--------------------------------------------~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~ 302 (505)
T 3nyq_A 267 L--------------------------------------------AKALAGARLLVSGSAALPVHDHERIAAATGRRVIE 302 (505)
T ss_dssp H--------------------------------------------HHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEE
T ss_pred h--------------------------------------------hcccccceEEEECCCCCCHHHHHHHHHhcCCeeec
Confidence 0 00012789999999999999999999999999999
Q ss_pred ccCcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccC
Q 005874 451 GYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVD 530 (672)
Q Consensus 451 ~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~ 530 (672)
.||+||+++.++.........+++|.|+++++++|+| +++..++..+.|+.|||+|+|++++.|||++|+.|++.|.
T Consensus 303 ~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~-- 379 (505)
T 3nyq_A 303 RYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFT-- 379 (505)
T ss_dssp EEEETTTEEEEECCTTSCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBC--
T ss_pred ccchhhcccccccCCCCCCCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhc--
Confidence 9999999887776665566678999999999999999 7777665445588999999999999999999999999997
Q ss_pred CCCCceEecCcEEEEccCceEEEEecC-CCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEEcCh
Q 005874 531 DKGMRWFYTGDVGQVHADGCLEIIDRK-KDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVVASQ 606 (672)
Q Consensus 531 ~~~~gw~~TGDlg~~~~dG~l~i~gR~-~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~~~ 606 (672)
.+|||+|||+|++++||.|+++||+ ||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.+
T Consensus 380 --~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~-~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~ 456 (505)
T 3nyq_A 380 --EDGFFRTGDMAVRDPDGYVRIVGRKATDLIKS-GGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPAD 456 (505)
T ss_dssp --TTSCEEEEEEEEECTTSCEEEEEESSCCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS
T ss_pred --CCCCCccCCeEEECCCccEEEeCCccCceEEe-CCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECC
Confidence 7899999999999999999999998 599997 6999999999999999999999999997654 46999999876
Q ss_pred hH---HHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHH
Q 005874 607 PA---VEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRK 661 (672)
Q Consensus 607 ~~---~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~ 661 (672)
.. ..+... ..++++|+.|++|+.|+++++.| +|++||++|++|++
T Consensus 457 ~~~~~~~~~l~----~~l~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 457 PAAPPALGTLA----DHVAARLAPHKRPRVVRYLDAVP------RNDMGKIMKRALNR 504 (505)
T ss_dssp TTSCCCHHHHH----HHHHHHTCGGGSCSEEEECSCCC------C-------------
T ss_pred CCCCCCHHHHH----HHHHhhCCCCcCccEEEEECCCC------CCCCcCeeHHhhcc
Confidence 32 111122 66778999999999999999988 99999999999986
No 27
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=1.7e-69 Score=606.40 Aligned_cols=500 Identities=24% Similarity=0.305 Sum_probs=400.4
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCC
Q 005874 53 SWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEE 132 (672)
Q Consensus 53 ~~~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~ 132 (672)
.+++..|+.++|+++++.+|+.+++... + +..+++||+||.++++++|++|+++|+++||
T Consensus 16 ~~~~~~tl~~~l~~~a~~~p~~~~~~~~------------~--------~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd 75 (576)
T 3gqw_A 16 RYADFPTLVDALDYAALSSAGMNFYDRR------------C--------QLEDQLEYQTLKARAEAGAKRLLSLNLKKGD 75 (576)
T ss_dssp CCSCCSSHHHHHHHHTTSSCEEEEECTT------------S--------CEEEEEEHHHHHHHHHHHHHHHHHTCCCTTC
T ss_pred ccCCCCcHHHHHHHHhhCCCCeEEeCCC------------C--------CceeEEcHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 3467789999999999999998776421 1 1235899999999999999999999999999
Q ss_pred EEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCC-------HHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEE
Q 005874 133 RVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG-------EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHV 205 (672)
Q Consensus 133 ~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~i 205 (672)
+|+++++|++++++++|||+++|++++|+++.++ .+++.+++++++++++|++.+..+.+.......+.+.
T Consensus 76 ~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-- 153 (576)
T 3gqw_A 76 RVALIAETSSEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELH-- 153 (576)
T ss_dssp EEEEECCSSHHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCE--
T ss_pred EEEEEcCCcHHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCcce--
Confidence 9999999999999999999999999999999998 7999999999999999999988877766554433221
Q ss_pred EEecCCCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhh
Q 005874 206 ICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI 285 (672)
Q Consensus 206 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~ 285 (672)
.......... .........+.++++++|+|||||||.||||++||+++++.+......
T Consensus 154 ---------------------~~~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~ 211 (576)
T 3gqw_A 154 ---------------------VLSHAWFKAL-PEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHD 211 (576)
T ss_dssp ---------------------EEEHHHHHTS-CCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHT
T ss_pred ---------------------ecchhhhhcc-cccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhc
Confidence 1222222111 122223345668999999999999999999999999999988887665
Q ss_pred -cCCCCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEeeC-------CcccccCchhhhhcccccccccccceeeecchH
Q 005874 286 -VPDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYG-------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPA 356 (672)
Q Consensus 286 -~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~-------~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~ 356 (672)
+ .++++|++++++|++|.+++.. .+.++..|+++++. +|..+.+. ++++++|+++++|.
T Consensus 212 ~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~ 279 (576)
T 3gqw_A 212 GI-KLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKL-----------ISKNRGTVSVAPPF 279 (576)
T ss_dssp TS-CCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHH-----------HHHTTCCEEEECHH
T ss_pred cc-CCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHH-----------HHHhCCeEEEcCHH
Confidence 5 8999999999999999999876 56678899988873 45455555 99999999999999
Q ss_pred HHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHH
Q 005874 357 ILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADT 436 (672)
Q Consensus 357 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~ 436 (672)
++..+...... ........+++|.+++||+++++++
T Consensus 280 ~~~~l~~~~~~--------------------------------------------~~~~~~~l~~lr~~~~gg~~l~~~~ 315 (576)
T 3gqw_A 280 GYELCQRRVNE--------------------------------------------KDLAELDLSCWRVAGIGAEPISAEQ 315 (576)
T ss_dssp HHHHHHHSCCH--------------------------------------------HHHTTCCCTTCCEEEECSSCCCHHH
T ss_pred HHHHHHHHhcc--------------------------------------------cccccCChhhhHhhhccCccCCHHH
Confidence 99877653211 1111223358999999999999999
Q ss_pred HHHHHHHh------CCceecccCcccccccccccCCCCC----------------------------CCCccCCCcCCeE
Q 005874 437 QRFINICL------GAPIGQGYGLTETCAGGTFSEVDDS----------------------------SVGRVGAPLPCSF 482 (672)
Q Consensus 437 ~~~~~~~~------~~~v~~~YG~TE~~~~~~~~~~~~~----------------------------~~~~~G~p~~~~~ 482 (672)
.+.+.+.+ ++++++.||+||+++.++....... ...++|.|+++++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~ 395 (576)
T 3gqw_A 316 LHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHG 395 (576)
T ss_dssp HHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCE
T ss_pred HHHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCe
Confidence 99999887 6889999999999887765432211 0137999999999
Q ss_pred EEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEe
Q 005874 483 IKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVK 562 (672)
Q Consensus 483 v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik 562 (672)
++|+| +++..+ +.|+.|||+|+|+++++||+++|+.+.+.+ .+|||+|||+|++ +||.|+++||+||+||
T Consensus 396 ~~i~d-~~g~~~---~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~-----~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik 465 (576)
T 3gqw_A 396 IEIRN-EAGMPV---AERVVGHICISGPSLMSGYFGDQVSQDEIA-----ATGWLDTGDLGYL-LDGYLYVTGRIKDLII 465 (576)
T ss_dssp EEEEC-TTSCBC---CTTBCEEEEEESTTSCCCBTTCHHHHHHHH-----HHSCEEEEEEEEE-ETTEEEEEEETTTCEE
T ss_pred EEEEC-CCCCCC---CCCCeEEEEEeCccccccccCCcccccccc-----CCCeeeccceEEE-ECCEEEEEecCcceEE
Confidence 99999 777665 478999999999999999999999888766 7899999999999 6999999999999999
Q ss_pred cCCceeeccHHHHHHHhcCcccceEEEEecCCC-CeEEEEEEcChhHHHHHHHHcChhhhhcCC-CCCcceeEEEEee--
Q 005874 563 LQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH-SYCVALVVASQPAVEEWAAKQGIVGKNARL-DKFEIPAKIKLLS-- 638 (672)
Q Consensus 563 ~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~-~~~va~v~~~~~~~~~~~~~~~~~~~~~~L-~~~~~p~~i~~~~-- 638 (672)
+ +|++|+|.+||++|.+||+|.+++|++.... ...+++++............ ...+.+.| +.|++|..+.+++
T Consensus 466 ~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~~l~~~~~~p~~i~~v~~~ 542 (576)
T 3gqw_A 466 I-RGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQEKIILQIQCRISDEERRGQL--IHALAARIQSEFGVTAAIDLLPPH 542 (576)
T ss_dssp E-TTEEECHHHHHHHHTTSSSCCTTSEEEEECTTSCEEEEEECCCCCHHHHHHH--HHHHHHHHHHHHSCCEEEEEECSS
T ss_pred E-CCEEECHHHHHHHHHhCcccccccEEEEEcCCccEEEEEEEecCchhHHHHH--HHHHHHHHHHHhCCceeEEEECCC
Confidence 8 6999999999999999999998776664333 33444444433221111111 14455666 6899999999887
Q ss_pred cCCCCCCCccccccccChHHHHHHHHHHHHhhh
Q 005874 639 YPWTSEAGLVTAALKIKREAIRKAFADDLARLY 671 (672)
Q Consensus 639 ~~~~~~~~~~t~~gKi~R~~l~~~~~~~i~~ly 671 (672)
..| +|++||++|++|+++|++.+.+.|
T Consensus 543 ~lP------~t~~GKi~r~~l~~~~~~~~~~~~ 569 (576)
T 3gqw_A 543 SIP------RTSSGKPARAEAKKRYQKAYAASL 569 (576)
T ss_dssp CSC------BCTTSSBCHHHHHHHHHHHHTCC-
T ss_pred CcC------cCCCccchHHHHHHHHHHHhhhcc
Confidence 555 999999999999999999988766
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=6.7e-70 Score=611.21 Aligned_cols=502 Identities=19% Similarity=0.185 Sum_probs=394.7
Q ss_pred CCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 005874 55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV 134 (672)
Q Consensus 55 ~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V 134 (672)
....|+.++|+++++++||++|+.+.+ + +..+++||+||.++++++|.+|.++|+++||+|
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~~-----------~--------~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V 68 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFLN-----------K--------ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRV 68 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEEE-----------T--------TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEEc-----------C--------CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 455899999999999999999998742 1 123589999999999999999999999999999
Q ss_pred EEEcCCCHHHHHHHHHHHhCCcEEEecCCCC---CHHHHHHHHhcccceEEEECccchHHHHhhh-cCCCCccEEEEecC
Q 005874 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASL---GEEALCYSLNETEVTTVICGSKELKKLVDLS-GQLDTVKHVICMDA 210 (672)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~-~~~~~l~~ii~~~~ 210 (672)
+++++|++++++++|||+++|++++|+++.+ +.+++.++++.+++++++++.+....+.... ...+....
T Consensus 69 ~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~------ 142 (590)
T 3kxw_A 69 LLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLK------ 142 (590)
T ss_dssp EEECCSSHHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETT------
T ss_pred EEEcCCchhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccc------
Confidence 9999999999999999999999999999988 4578999999999999999987665544322 12221111
Q ss_pred CCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCC
Q 005874 211 NIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLG 290 (672)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~ 290 (672)
..+...+++.... .....+....++++++|+|||||||.||||++||+++++.+......+ +++
T Consensus 143 --------------~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~ 206 (590)
T 3kxw_A 143 --------------IPAIALESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-HMN 206 (590)
T ss_dssp --------------EEEEEGGGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-TCC
T ss_pred --------------cceeechhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-CCC
Confidence 1122222221111 112233456789999999999999999999999999999999988888 999
Q ss_pred CCcEEEEecChHhHHHHHH-HHHHhHhCcEEeeC-------CcccccCchhhhhcccccccccccceeeecchHHHHHHH
Q 005874 291 SKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYG-------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVR 362 (672)
Q Consensus 291 ~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~-------~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~ 362 (672)
++|++++++|++|.+++.. .+.+++.|+++++. +|..+.+. ++++++|++.++|.++..+.
T Consensus 207 ~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~~~~~l~ 275 (590)
T 3kxw_A 207 DETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKH-----------ITKYKATISGSPNFAYDYCV 275 (590)
T ss_dssp TTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHH-----------HHHHTCSEEEECTHHHHHHH
T ss_pred CcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHH-----------HHHhCCeeecCChhHHHHHH
Confidence 9999999999999999987 78889999999984 44445555 99999999999999999887
Q ss_pred HHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHH
Q 005874 363 DGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINI 442 (672)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~ 442 (672)
+.+...... ....++||.+++||+++++++.+.+++
T Consensus 276 ~~~~~~~~~--------------------------------------------~~~l~~lr~~~~gg~~l~~~~~~~~~~ 311 (590)
T 3kxw_A 276 KRIREEKKE--------------------------------------------GLDLSSWVTAFNGAEPVREETMEHFYQ 311 (590)
T ss_dssp HHCCGGGGT--------------------------------------------TCCCTTCCEEEECSSCCCHHHHHHHHH
T ss_pred HHhhhhhcc--------------------------------------------CCCchhhHHHhhCCCCCCHHHHHHHHH
Confidence 643221110 112358999999999999999999998
Q ss_pred HhC------CceecccCcccccccccccCCC---------------------------CCCCCccCCCcCCeEEEEEecC
Q 005874 443 CLG------APIGQGYGLTETCAGGTFSEVD---------------------------DSSVGRVGAPLPCSFIKLIDWP 489 (672)
Q Consensus 443 ~~~------~~v~~~YG~TE~~~~~~~~~~~---------------------------~~~~~~~G~p~~~~~v~i~d~~ 489 (672)
.++ ++++++||+||+++.++..... ....+++|.|+++ ++|+|.+
T Consensus 312 ~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~ 389 (590)
T 3kxw_A 312 AFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPD 389 (590)
T ss_dssp HHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTT
T ss_pred HHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCC
Confidence 873 4799999999998876643221 1123678999988 8899943
Q ss_pred CCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCC--C--CCceEecCcEEEEccCceEEEEecCCCeEecCC
Q 005874 490 EGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDD--K--GMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQH 565 (672)
Q Consensus 490 ~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~--~--~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~ 565 (672)
++..+ ++|+.|||+|+||+++.|||++|+.|++.|.... + +.+||+|||+|+++ ||.|+|+||+||+||+ +
T Consensus 390 ~~~~~---~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~ 464 (590)
T 3kxw_A 390 TLIPC---DFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-Y 464 (590)
T ss_dssp TCCBC---CTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-H
T ss_pred CCcCC---CCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-C
Confidence 35443 5889999999999999999999999999996431 1 23399999999999 9999999999999998 6
Q ss_pred ceeeccHHHHHHH-hcCcccc--eEEEEecCCC--CeEEEEEEcChhHHHHHHHHcChhhhhcCCCC-Cccee-EEEEee
Q 005874 566 GEYVSLGKVEAAL-IVSPYVD--NIMMHADPFH--SYCVALVVASQPAVEEWAAKQGIVGKNARLDK-FEIPA-KIKLLS 638 (672)
Q Consensus 566 G~~v~p~~iE~~l-~~~~~V~--~~~V~g~~~~--~~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~-~~~p~-~i~~~~ 638 (672)
|++|+|.+||++| ..+|.|. +|+|++.+++ +.+++++++.+....+...+.....+++.|+. +++|. .+.+++
T Consensus 465 G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~ 544 (590)
T 3kxw_A 465 GKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIP 544 (590)
T ss_dssp HHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETTEEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCCCEEEEEE
T ss_pred CEecCHHHHHHHHHhcCccccCccEEEEEecCCCCceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCceeEEEEEC
Confidence 9999999999999 8899998 7888886443 46888888776431111111111455566774 67775 666664
Q ss_pred --cCCCCCCCccccccccChHHHHHHHHH
Q 005874 639 --YPWTSEAGLVTAALKIKREAIRKAFAD 665 (672)
Q Consensus 639 --~~~~~~~~~~t~~gKi~R~~l~~~~~~ 665 (672)
+.| +|++|||+|++|+++|.+
T Consensus 545 ~~~lP------~t~sGKi~R~~L~~~~~~ 567 (590)
T 3kxw_A 545 LKAMP------HTTSGKIRRNFCRKHLLD 567 (590)
T ss_dssp TTCSC------CCSCHHHHHHHHHHHHHH
T ss_pred CCccC------cCCCcHHHHHHHHHHHHc
Confidence 565 999999999999999976
No 29
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=4.4e-69 Score=652.30 Aligned_cols=485 Identities=21% Similarity=0.257 Sum_probs=398.0
Q ss_pred CCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 005874 58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF 137 (672)
Q Consensus 58 ~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~ 137 (672)
.+++++|+++++++||++|+.+ .++ .+||+||.++++++|++|.+.|+++|++|+|+
T Consensus 464 ~~l~~~~~~~~~~~p~~~Av~~------------~~~-----------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~ 520 (1304)
T 2vsq_A 464 KPLTYWFKEAVNANPDAPALTY------------SGQ-----------TLSYRELDEEANRIARRLQKHGAGKGSVVALY 520 (1304)
T ss_dssp CCHHHHHHHHHHHCTTSEEEES------------SSC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEC
T ss_pred CCHHHHHHHHHHhCCCCeEEEE------------CCe-----------eEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEE
Confidence 7899999999999999999986 333 79999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCccccc
Q 005874 138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVS 217 (672)
Q Consensus 138 ~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~ 217 (672)
++|++++++++|||+++|+++||++|.++.+++.++++++++++++++.+....+. .++.....+.+++..
T Consensus 521 ~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~~~~~~~~~~~~~----- 591 (1304)
T 2vsq_A 521 TKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAA----ELPYTGTTLFIDDQT----- 591 (1304)
T ss_dssp CCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTST----TCCCCSEEEESSCGG-----
T ss_pred eCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhh----ccCCCCcEEEecccc-----
Confidence 99999999999999999999999999999999999999999999999976543221 122222333322210
Q ss_pred ccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEEE
Q 005874 218 SVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLA 297 (672)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~ 297 (672)
. .......+.....++++|+|+|||||||.||||+++|+++++. ......+ .++++|++++
T Consensus 592 --------------~---~~~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-~~~~~d~~l~ 652 (1304)
T 2vsq_A 592 --------------R---FEEQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-AFSDQDTFLS 652 (1304)
T ss_dssp --------------G---GGSCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS-CCCTTCEEEE
T ss_pred --------------c---cccccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc-CCCCCCEEEE
Confidence 0 0001111223456899999999999999999999999999875 3333445 7889999999
Q ss_pred ecChHhHHHHHHHHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCchhH
Q 005874 298 YLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSK 377 (672)
Q Consensus 298 ~~pl~h~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~ 377 (672)
+.|++|..+.+.++.+|..|+++++.++....+. ..+...++++++|+++++|++++.+.+.....
T Consensus 653 ~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~-----~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~--------- 718 (1304)
T 2vsq_A 653 VSNYAFDAFTFDFYASMLNAARLIIADEHTLLDT-----ERLTDLILQENVNVMFATTALFNLLTDAGEDW--------- 718 (1304)
T ss_dssp CSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCH-----HHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHH---------
T ss_pred ECCccHHHHHHHHHHHHHcCCEEEECChhhcCCH-----HHHHHHHHHcCCcEEEccHHHHHHHHhhchhc---------
Confidence 9999999998889999999999999544332221 11222389999999999999999886521000
Q ss_pred HHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCceecccCccc
Q 005874 378 KLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQGYGLTE 456 (672)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE 456 (672)
.++||.+++||++++++..+.+...+ +++++|+||+||
T Consensus 719 -----------------------------------------~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE 757 (1304)
T 2vsq_A 719 -----------------------------------------MKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTE 757 (1304)
T ss_dssp -----------------------------------------HHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGG
T ss_pred -----------------------------------------CCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhH
Confidence 02799999999999999988888776 478999999999
Q ss_pred ccccccccCCC----CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCC-
Q 005874 457 TCAGGTFSEVD----DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDD- 531 (672)
Q Consensus 457 ~~~~~~~~~~~----~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~- 531 (672)
++..++..... .....++|.|+++++++|+| +++..+ +.|..|||||+|+++++||+++|+.|+++|..++
T Consensus 758 ~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~---p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~ 833 (1304)
T 2vsq_A 758 GTVFATAHVVHDLPDSISSLPIGKPISNASVYILN-EQSQLQ---PFGAVGELCISGMGVSKGYVNRADLTKEKFIENPF 833 (1304)
T ss_dssp GSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEEC-TTSCBC---CTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTT
T ss_pred HhHHheeeeccCccccCCCCCCceeeCCCEEEEEC-CCcCCC---CCCCceEEEEeccccCccccCCcccchhhhccCCC
Confidence 99877655432 22346899999999999999 666554 5889999999999999999999999999997553
Q ss_pred -CCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEEcChh
Q 005874 532 -KGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVVASQP 607 (672)
Q Consensus 532 -~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~~~~ 607 (672)
++++||+|||+|++++||.|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++..+. ..++|+|++...
T Consensus 834 ~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~ 912 (1304)
T 2vsq_A 834 KPGETLYRTGDLARWLPDGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQ 912 (1304)
T ss_dssp STTCEEEEEEEEEEECTTSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSS
T ss_pred CCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCC
Confidence 46789999999999999999999999999998 5999999999999999999999999997643 479999998763
Q ss_pred HHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHH
Q 005874 608 AVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAF 663 (672)
Q Consensus 608 ~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~ 663 (672)
...+... ..++++||.|++|..+++++..| +|++||++|++|.+.+
T Consensus 913 ~~~~~l~----~~l~~~Lp~ymvP~~~~~l~~lP------~t~~GKidR~~L~~~~ 958 (1304)
T 2vsq_A 913 LSAEDVK----AHLKKQLPAYMVPQTFTFLDELP------LTTNGKVNKRLLPKPD 958 (1304)
T ss_dssp SCHHHHH----HHHHHHSCGGGSCSEEEEESCCC------CCSSCSSCCSCCCCCC
T ss_pred CCHHHHH----HHHHHhChHhhhccEEEEecccC------CCCCcccCHhhcCCcc
Confidence 3222222 56678999999999999999988 9999999999886543
No 30
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=4.3e-69 Score=600.34 Aligned_cols=505 Identities=20% Similarity=0.220 Sum_probs=310.2
Q ss_pred CCCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCE
Q 005874 54 WEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEER 133 (672)
Q Consensus 54 ~~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~ 133 (672)
+....|+.++|+++++++||++|+.+.+-. .+. ..+..+.+||+||.++++++|+.|.+.|+ +||+
T Consensus 16 ~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~--------~~~-----~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~ 81 (562)
T 3ite_A 16 YTSTVPPSHYIETWAKTHPEWKAVEVATGF--------LGS-----QKIVTEDWTYKKLNETANQVANLIIHASL-HGRA 81 (562)
T ss_dssp --CCCCTTHHHHHHHHHCTTSEEEEEEECC------------------CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCE
T ss_pred ecccCCHHHHHHHHHHHCCCchhhhccccc--------ccc-----cccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCE
Confidence 455689999999999999999999874210 000 01234689999999999999999999999 7999
Q ss_pred EEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCc
Q 005874 134 VAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIP 213 (672)
Q Consensus 134 V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~ 213 (672)
|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++++....+ ..+....++....
T Consensus 82 V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~--- 153 (562)
T 3ite_A 82 IAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----ELPPETKVLDTKN--- 153 (562)
T ss_dssp EEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----CCCTTCEEEETTC---
T ss_pred EEEEeCCCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----ccCccceeecccc---
Confidence 99999999999999999999999999999999999999999999999999987654321 1111111111100
Q ss_pred ccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhc-------
Q 005874 214 SAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV------- 286 (672)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~------- 286 (672)
..+.+....... ........++++++|+|||||||.||||++||+++.+.+..+...+
T Consensus 154 --------------~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~ 218 (562)
T 3ite_A 154 --------------QSFIENLSTQDT-SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKS 218 (562)
T ss_dssp --------------HHHHHHHHHSCC-SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGG
T ss_pred --------------hhhhhhcccccc-cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchh
Confidence 012222221111 1122344578899999999999999999999999998877655432
Q ss_pred CCCCCCcEEEEecChHhHHHHHHHHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHH
Q 005874 287 PDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVR 366 (672)
Q Consensus 287 ~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~ 366 (672)
..+...+++++..|+.|..++...+.++..|+++++.......+ .+...++++++|++.++|++++.+...
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~-------~~~~~i~~~~~t~~~~~P~~l~~~~~~-- 289 (562)
T 3ite_A 219 LELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLD-------DLPRTFRELGVTHAGIVPSLLDQTGLV-- 289 (562)
T ss_dssp GGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHH-------SHHHHHHHTTCCEEEECHHHHHHHTCC--
T ss_pred cccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHH-------HHHHHHHHcCCCEEEcCHHHHhhcccC--
Confidence 15788999999999999998888888999999999844322111 122338999999999999987654220
Q ss_pred HhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCC
Q 005874 367 KKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGA 446 (672)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~ 446 (672)
. ...++||.+++||+++++++.+.++..+++
T Consensus 290 --~-----------------------------------------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~ 320 (562)
T 3ite_A 290 --P-----------------------------------------------EDAPHLVYLGVGGEKMTPRTQQIWSSSDRV 320 (562)
T ss_dssp --G-----------------------------------------------GGSTTCCEEEEESSCCCHHHHHHHTTCSSC
T ss_pred --c-----------------------------------------------cccCceEEEEEecCCCCHHHHHHHhhCCCc
Confidence 0 012489999999999999999999998899
Q ss_pred ceecccCcccccccccccCC-CCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhh
Q 005874 447 PIGQGYGLTETCAGGTFSEV-DDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKE 525 (672)
Q Consensus 447 ~v~~~YG~TE~~~~~~~~~~-~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~ 525 (672)
+++++||+||++..++.... .....+++|.|+++++++|+|.+.+..+ ++|+.|||+|+||+++.|||++|+.|+.
T Consensus 321 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~---~~g~~GEl~v~g~~v~~GY~~~p~~t~~ 397 (562)
T 3ite_A 321 ALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHV---KKGMAGELVIEGSLVANGYLNRPDAKGF 397 (562)
T ss_dssp EEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBC---CTTSCEEEEEESTTSCCEESSCTTCCSE
T ss_pred EEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCC---CCCCceEEEEeccccchhhCCCcccccc
Confidence 99999999999877665443 3345578999999999999994344443 5889999999999999999999999886
Q ss_pred hcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcC-cccceEEEEecCCCC----eEEE
Q 005874 526 VYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVS-PYVDNIMMHADPFHS----YCVA 600 (672)
Q Consensus 526 ~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~-~~V~~~~V~g~~~~~----~~va 600 (672)
.+. ++++||+|||+|++|+||.|+|+||+||+||+ +|++|+|.+||++|.+| |.+.+++|++..++. .+++
T Consensus 398 ~~~---~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~ 473 (562)
T 3ite_A 398 CDI---NGRKMYRTGDIVRMDADSSILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVS 473 (562)
T ss_dssp EEE---TTEEEEEEEEEEEECTTSCEEEEEEC------------------------------------------------
T ss_pred ccC---CCCEEEecCCEEEEcCCCeEEEEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEE
Confidence 652 14569999999999999999999999999997 69999999999999888 778888888866542 2445
Q ss_pred EEEcChhHHHHH----------HHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccc-cccccChHHHHHHHHHH
Q 005874 601 LVVASQPAVEEW----------AAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVT-AALKIKREAIRKAFADD 666 (672)
Q Consensus 601 ~v~~~~~~~~~~----------~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t-~~gKi~R~~l~~~~~~~ 666 (672)
++.......... ..+....+++++|+.|++|+.|+++++.| +| ++||++|++|+++|++.
T Consensus 474 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP------~t~~~GKi~r~~L~~~~~~~ 544 (562)
T 3ite_A 474 FVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIP------LRDTSAKTDAKALEHMFHTL 544 (562)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred EEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCC------CCCCCCcchHHHHHHHHhcc
Confidence 554433322110 01122267778999999999999999987 88 89999999999999763
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=5.6e-58 Score=501.40 Aligned_cols=401 Identities=21% Similarity=0.232 Sum_probs=312.2
Q ss_pred CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 005874 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (672)
Q Consensus 57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i 136 (672)
..|+.++|+++++++||++|+.+.+.. ++. .|..+.+||+||.++++++|++|+++|+ +||+|+|
T Consensus 23 ~~tl~~~l~~~a~~~pd~~Al~~~~~~--------~~~------~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i 87 (480)
T 3t5a_A 23 VRSLPAALRACARLQPHDPAFTFMDYE--------QDW------DGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVI 87 (480)
T ss_dssp -CCHHHHHHHHHHHSTTSEEEEEEETT--------TCT------TCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEE
T ss_pred cccHHHHHHHHHHhCCCCceEEEeccc--------CCC------CCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEE
Confidence 478999999999999999999975311 111 2345789999999999999999999996 9999999
Q ss_pred EcCCCHHHHHHHHHHHhCCcEEEecCC---CCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCc--cEEEEecCC
Q 005874 137 FADTRAEWFVALQGCFRRNVTVVTIYA---SLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTV--KHVICMDAN 211 (672)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l--~~ii~~~~~ 211 (672)
+++|+++|++++|||+++|+++||+++ .++.+++.+++++++++++|++.+....+.+.....+.. ..++.++..
T Consensus 88 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (480)
T 3t5a_A 88 SAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLL 167 (480)
T ss_dssp ECCSSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGS
T ss_pred EcCCcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEeccc
Confidence 999999999999999999999999999 788999999999999999999998887777654433321 122222111
Q ss_pred CcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCC
Q 005874 212 IPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGS 291 (672)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~ 291 (672)
.. ............++++++|+|||||||.||||++||+|+++.+......+ .+..
T Consensus 168 ----------------------~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~ 223 (480)
T 3t5a_A 168 ----------------------DL-DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-FADT 223 (480)
T ss_dssp ----------------------CT-TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-CTTT
T ss_pred ----------------------cc-ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-cccc
Confidence 10 01111223455678999999999999999999999999999988888777 6666
Q ss_pred ------CcEEEEecChHhHHHHHH-HHHHhHhCcEEeeC-------CcccccCchhhhhcccccccccccceeeecchHH
Q 005874 292 ------KDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYG-------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAI 357 (672)
Q Consensus 292 ------~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~-------~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~ 357 (672)
+|++++++|++|.+++.. ++.+++.|+++++. ++..+.+. ++++++| +.++|.+
T Consensus 224 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~-----------i~~~~~t-~~~~p~~ 291 (480)
T 3t5a_A 224 DGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHL-----------MASDFHA-FSAAPNF 291 (480)
T ss_dssp TTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHH-----------TTSSSEE-EEEECHH
T ss_pred ccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHH-----------HHhhcee-EeeChHH
Confidence 999999999999999775 67889999999984 44444444 9999999 8899998
Q ss_pred HHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHH
Q 005874 358 LDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQ 437 (672)
Q Consensus 358 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~ 437 (672)
+..++........ ......++||.+++||+++++++.
T Consensus 292 ~~~l~~~~~~~~~-------------------------------------------~~~~~l~~lr~i~~gG~~l~~~~~ 328 (480)
T 3t5a_A 292 AFELAARRTTDDD-------------------------------------------MAGRDLGNILTILSGSERVQAATI 328 (480)
T ss_dssp HHHHHHHHCCTGG-------------------------------------------GTTCCCTTCCEEEECCTTCCHHHH
T ss_pred HHHHHHhhcCccc-------------------------------------------ccccchhhhheeeecCCcCCHHHH
Confidence 8887653211000 011223589999999999999999
Q ss_pred HHHHHHhC------CceecccCcccccccccccCCCC-------------------------CCCCccCCCcCCeEEEEE
Q 005874 438 RFINICLG------APIGQGYGLTETCAGGTFSEVDD-------------------------SSVGRVGAPLPCSFIKLI 486 (672)
Q Consensus 438 ~~~~~~~~------~~v~~~YG~TE~~~~~~~~~~~~-------------------------~~~~~~G~p~~~~~v~i~ 486 (672)
+.+++.++ +.++++||+||+++.++...... ...+++|.|++ ++++|+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~iv 407 (480)
T 3t5a_A 329 KRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIV 407 (480)
T ss_dssp HHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEE
T ss_pred HHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEE
Confidence 99999874 46999999999998776654321 22358999999 999999
Q ss_pred ecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcc-------cCCCCCceEecCcEEEEccCceEEEEec
Q 005874 487 DWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYK-------VDDKGMRWFYTGDVGQVHADGCLEIIDR 556 (672)
Q Consensus 487 d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~-------~~~~~~gw~~TGDlg~~~~dG~l~i~gR 556 (672)
|.+++..+ +.|+.|||||+||+++.|||++|+.|+++|. ...+++|||+|||+|+++ ||.|+|+||
T Consensus 408 d~~~g~~~---~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 408 DSDTCIEC---PDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp ETTTTEEC---CTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred cCCCCcCC---CCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 94335544 5889999999999999999999999999995 222367899999999997 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=1.5e-51 Score=430.46 Aligned_cols=312 Identities=19% Similarity=0.237 Sum_probs=262.0
Q ss_pred CCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEEEecChHhHHHHHHHHHHhHhCcEEeeCC-ccc
Q 005874 249 SADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGT-PLT 327 (672)
Q Consensus 249 ~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~~~-~~~ 327 (672)
.|++++|+|||||||.||||++||+|+++.+......+ +++++|++++++|++|++++...+.++..|+++++.+ ...
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~ 114 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN 114 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc
Confidence 47899999999999999999999999999999988888 9999999999999999999998888999999998833 333
Q ss_pred ccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHH
Q 005874 328 LTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWN 407 (672)
Q Consensus 328 l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (672)
.... ++++++|++.++|+++..+++.....
T Consensus 115 ~~~~-----------i~~~~~t~~~~~P~~l~~ll~~~~~~--------------------------------------- 144 (358)
T 4gs5_A 115 PLAG-----------LDHADFDFVAMVPMQLQSILENSATS--------------------------------------- 144 (358)
T ss_dssp TTTT-----------CSSCCCSEEEECHHHHHHHHHCTTTG---------------------------------------
T ss_pred HHHH-----------HHHhCCeEEEcChHHHHHhhcccccc---------------------------------------
Confidence 4444 89999999999999999987632111
Q ss_pred HHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccCcccccccccccCCCCCCCCccCCCcCCeEEEEEe
Q 005874 408 LLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLID 487 (672)
Q Consensus 408 ~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d 487 (672)
...++||.+++||+++++++.+++++ ++++++++||+||+++.++....+....+.+|.+.|++++.+.+
T Consensus 145 ---------~~l~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~g~~~~~~pgv~~~~~~ 214 (358)
T 4gs5_A 145 ---------GQVDRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEASELYVFLPGIQYGVDE 214 (358)
T ss_dssp ---------GGGGGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTCCSCEEECTTCEEEECT
T ss_pred ---------ccCCcceEEEEcccCCCchheecccc-cCceEEeccccccccceeecccccccccceeeccCCCeEEEecC
Confidence 01138999999999999999999987 49999999999999988887777777788999999999887644
Q ss_pred cCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCce
Q 005874 488 WPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGE 567 (672)
Q Consensus 488 ~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~ 567 (672)
.|||+++|+.. .+|||+|||+|++|+|| ++++||+||+||+ +|+
T Consensus 215 --------------~Gel~~~g~~~--------------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~ 258 (358)
T 4gs5_A 215 --------------RGCLHISGAVT--------------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINS-GGV 258 (358)
T ss_dssp --------------TSEEEEESGGG--------------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTE
T ss_pred --------------cCceEEecccc--------------------cCcceecCCccccccCc-eEEcccccCeEEE-CCE
Confidence 59999998642 67899999999999888 6778999999997 699
Q ss_pred eeccHHHHHHH---hcCcccceEEEE-ecCCC---CeEEEEEEcChhHHHH-HHHHcChhhhhcCCCCCcceeEEEEeec
Q 005874 568 YVSLGKVEAAL---IVSPYVDNIMMH-ADPFH---SYCVALVVASQPAVEE-WAAKQGIVGKNARLDKFEIPAKIKLLSY 639 (672)
Q Consensus 568 ~v~p~~iE~~l---~~~~~V~~~~V~-g~~~~---~~~va~v~~~~~~~~~-~~~~~~~~~~~~~L~~~~~p~~i~~~~~ 639 (672)
+|+|.+||++| ..||.|.+++|+ +.+++ +.++|+|+........ ... .+++++|+.|++|+.|+++++
T Consensus 259 ~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~~~~~~l~----~~l~~~L~~~~~P~~i~~v~~ 334 (358)
T 4gs5_A 259 KIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPEALTERLT----AEIRSRVSTYENPKHIYFAKA 334 (358)
T ss_dssp EEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCHHHHHHHH----HHHHHHSCGGGSCSCEEEESS
T ss_pred EECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCCCcCHHHHH----HHHHhhCCCCCCceEEEEECC
Confidence 99999999877 468999998876 44444 3588888877654322 122 667789999999999999999
Q ss_pred CCCCCCCccccccccChHHHHHHHHHHH
Q 005874 640 PWTSEAGLVTAALKIKREAIRKAFADDL 667 (672)
Q Consensus 640 ~~~~~~~~~t~~gKi~R~~l~~~~~~~i 667 (672)
.| +|++|||+|++|+++|.+..
T Consensus 335 lP------~t~~GKi~R~~L~~~l~e~~ 356 (358)
T 4gs5_A 335 FA------KTQTDKIDKRATFQKLSDSS 356 (358)
T ss_dssp CC------BCTTSCBCHHHHHHHTC---
T ss_pred cC------CCCCCChhHHHHHHHhhhhc
Confidence 87 99999999999999987754
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=3.4e-45 Score=394.50 Aligned_cols=322 Identities=16% Similarity=0.146 Sum_probs=247.4
Q ss_pred CCCC-CCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHh---hcCCCCCCcEEEEecChHhHHHHH-HHHHHhHhCcEE
Q 005874 246 YPVS-ADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT---IVPDLGSKDVYLAYLPLAHVLELV-AENLIAGVGSAI 320 (672)
Q Consensus 246 ~~~~-d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~~d~~l~~~pl~h~~~~~-~~~~~l~~G~~i 320 (672)
...+ +++++|+|||||||.||||++||+++.+....+.. .+ +++++|++++++|+.|..+.+ ..+.++..|+++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~ 159 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMV-GIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLT 159 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHT-TCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHc-CCCCCCEEEECcccccchhHHHHHHHHHHcCCEE
Confidence 3445 89999999999999999999999999877665533 34 789999999999997666554 467789999999
Q ss_pred eeC---CcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcC
Q 005874 321 GYG---TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFG 397 (672)
Q Consensus 321 ~~~---~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (672)
++. ++..+.+. +++++||+++++|+++..|.+.........
T Consensus 160 ~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~------------------------- 203 (436)
T 3qov_A 160 VPAAAGNSKRQIKF-----------ISDFKTTALHAIPSYAIRLAEVFQEEGIDP------------------------- 203 (436)
T ss_dssp ECCCSCCHHHHHHH-----------HHHHTCCEEECCHHHHHHHHHHHHHTTCCT-------------------------
T ss_pred EeCCCCCHHHHHHH-----------HHHHCCCEEEECHHHHHHHHHHHHHcCCCc-------------------------
Confidence 983 34444444 999999999999999999987654322110
Q ss_pred CCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccCcccccccccccCCCCCCCCccCCC
Q 005874 398 AWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAP 477 (672)
Q Consensus 398 ~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p 477 (672)
..+++|.+++||+++++++.+.+++.+|++++++||+||+++.+...... .....|.|
T Consensus 204 --------------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~~g~~~~ 261 (436)
T 3qov_A 204 --------------------RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQ--EQNGMHFW 261 (436)
T ss_dssp --------------------TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECT--TCSSEEEC
T ss_pred --------------------ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecC--CCCeeEEc
Confidence 01389999999999999999999999999999999999996543222211 11236777
Q ss_pred cCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEccCc------e-
Q 005874 478 LPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADG------C- 550 (672)
Q Consensus 478 ~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG------~- 550 (672)
.++++++|+|++++..+ ++|+.|||+|+|.. ++.| .++||+|||+|+++++| .
T Consensus 262 ~~~~~v~i~d~~~g~~~---~~g~~Gel~v~~~~------------~~~~-----~~~~y~TGDl~~~~~~gc~cG~~~~ 321 (436)
T 3qov_A 262 EDCYLVEIIDPETGEPV---PEGEIGELVLTTLD------------REMM-----PLIRYRTRDLTRILPGKCPCGRTHL 321 (436)
T ss_dssp TTTEEEEEECTTTCSBC---STTCCEEEEEEESS------------CCSS-----CCCSEEEEEEECEECSCCTTCCCSC
T ss_pred cCceEEEEEECCCCCCC---CCCCceEEEEeccC------------cCCc-----eEEEEEcCCEEEEcCCCCCCCCCcc
Confidence 78999999996566655 47899999999842 2334 67899999999999998 4
Q ss_pred --EEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCC---CCeEEEEEEcChhHHH----HHHHHcChhhh
Q 005874 551 --LEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPF---HSYCVALVVASQPAVE----EWAAKQGIVGK 621 (672)
Q Consensus 551 --l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~---~~~~va~v~~~~~~~~----~~~~~~~~~~~ 621 (672)
++|+||+||+||+ +|++|+|.+||++|.+||+|.+++|++..+ .+.++|+|+++ +... +..... ..+
T Consensus 322 ~il~i~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~~~~~~~~~~l~--~~l 397 (436)
T 3qov_A 322 RIDRIKGRSDDMFII-KGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLSTDNYIELEKIR--RDI 397 (436)
T ss_dssp EECCCCCBSSSCEEE-TTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTCCCCHHHHHHHH--HHH
T ss_pred ccCcccCccCCEEEE-CCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-CccccchhhHHHHH--HHH
Confidence 6999999999998 699999999999999999999999988654 35699999988 3211 111111 455
Q ss_pred hcCCCCC-cceeEEEEee--cCCCCCCCccccccccChH
Q 005874 622 NARLDKF-EIPAKIKLLS--YPWTSEAGLVTAALKIKRE 657 (672)
Q Consensus 622 ~~~L~~~-~~p~~i~~~~--~~~~~~~~~~t~~gKi~R~ 657 (672)
++.|+.+ +.|..+.+++ ..| +|+ ||++|.
T Consensus 398 ~~~l~~~~~~p~~i~~v~~~~lP------~t~-GKi~R~ 429 (436)
T 3qov_A 398 IRQLKDEILVTPKVKLVKKGSLP------QSE-GKAVRV 429 (436)
T ss_dssp HHHHHHHHSSCCEEEEECTTCCC--------------CE
T ss_pred HHHHHHhcCCceEEEEeCCCccc------CcC-CcceEE
Confidence 6778888 8899999998 666 999 999985
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=6.6e-45 Score=393.05 Aligned_cols=343 Identities=16% Similarity=0.106 Sum_probs=260.2
Q ss_pred EEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHh---hcCCCCCCcEEEEecCh-H
Q 005874 227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT---IVPDLGSKDVYLAYLPL-A 302 (672)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~~d~~l~~~pl-~ 302 (672)
+.+.+++.... +.......++++++++|||||||.||||++||+++......+.. .+ +++++|++++.+|+ .
T Consensus 72 ~~~~~~l~~~~---p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~l~~~~~~~ 147 (443)
T 2y4o_A 72 FSTKNDLRDNY---PFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAA-GGRPGDTLHNAFGYGL 147 (443)
T ss_dssp CBCHHHHHTTT---TTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCSS
T ss_pred CCcHHHHHhhC---CCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEeccCcc
Confidence 44556665432 11223345689999999999999999999999999876555443 45 78999999999999 5
Q ss_pred hHHHHHHHHHHhHhCcEEeeC---CcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCchhHHH
Q 005874 303 HVLELVAENLIAGVGSAIGYG---TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKL 379 (672)
Q Consensus 303 h~~~~~~~~~~l~~G~~i~~~---~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~ 379 (672)
|..++...+.++..|+++++. ++..+.+. ++++++|+++++|+++..|.+.........
T Consensus 148 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~------- 209 (443)
T 2y4o_A 148 FTGGLGIHYGAERLGCMVVPMSGGQTEKQVQL-----------IRDFEPKIILVTPSYMLNLIDEMVRQGMDP------- 209 (443)
T ss_dssp SHHHHHHHHHHHHHTCEEECCCSCCHHHHHHH-----------HHHHCCSEEEECHHHHHHHHHHHHHTTCCG-------
T ss_pred cccHHHHHHHHHHcCCEEEECCCCCHHHHHHH-----------HHHhCCcEEEECHHHHHHHHHHHHHcCCCc-------
Confidence 777777778889999999883 44444444 999999999999999999987543321100
Q ss_pred HHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccCcccccc
Q 005874 380 FDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCA 459 (672)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~ 459 (672)
..+++|.+++||+++++++.+.+++.+|+++++.||+||+++
T Consensus 210 --------------------------------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g 251 (443)
T 2y4o_A 210 --------------------------------------AESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMG 251 (443)
T ss_dssp --------------------------------------GGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTE
T ss_pred --------------------------------------ccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcC
Confidence 013899999999999999999999989999999999999854
Q ss_pred c-ccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEe
Q 005874 460 G-GTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFY 538 (672)
Q Consensus 460 ~-~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~ 538 (672)
. .+..... ... ..+.|.++++++|+|++++..+ +.|+.|||+|+|. +++.| .++||+
T Consensus 252 ~~~~~~~~~-~~~-g~~~~~~~~~~~i~d~~~g~~~---~~G~~Gel~v~~~------------t~~~~-----p~~~y~ 309 (443)
T 2y4o_A 252 PGVACECVE-TKD-GPVIWEDHFYPEIIDPVTGEVL---PDGSQGELVFTSL------------TKEAM-----PVIRYR 309 (443)
T ss_dssp EEEEEECTT-TCC-SEEECTTTEEEEEECTTTCCBC---CTTCCEEEEEEES------------SCSSS-----CCSSEE
T ss_pred CeEEeccCC-CCC-ceEEccCCeEEEEEcCCCCCCC---CCCCceEEEEeCC------------CcccC-----hhheee
Confidence 3 3322221 111 2455678999999994456554 4789999999983 23344 578999
Q ss_pred cCcEEEEccC-ceE-----EEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCC---CCeEEEEEEcCh--h
Q 005874 539 TGDVGQVHAD-GCL-----EIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPF---HSYCVALVVASQ--P 607 (672)
Q Consensus 539 TGDlg~~~~d-G~l-----~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~---~~~~va~v~~~~--~ 607 (672)
|||+|+++++ |.+ +++||+||+||+ +|++|+|.+||++|.+||+|.+++|++..+ .+.++++|++++ +
T Consensus 310 TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~ 388 (443)
T 2y4o_A 310 TRDLTALLPPTARAMRRLAKITGRSDDMLIV-RGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAA 388 (443)
T ss_dssp EEEEECEECCSSSSSCEECCCCEESSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHH
T ss_pred cCCEEEEcCCCCCCccccCccccccCCeEEE-CCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCccc
Confidence 9999999999 987 899999999998 599999999999999999999999887432 356899999886 2
Q ss_pred H---HHHHHHHcChhhhhcCCCCC-cceeEEEEee--cCCCCCCCccccccccChHHHH
Q 005874 608 A---VEEWAAKQGIVGKNARLDKF-EIPAKIKLLS--YPWTSEAGLVTAALKIKREAIR 660 (672)
Q Consensus 608 ~---~~~~~~~~~~~~~~~~L~~~-~~p~~i~~~~--~~~~~~~~~~t~~gKi~R~~l~ 660 (672)
. ..+.... ...++++|+.+ .+|..|.+++ +.| +|++||++|+..+
T Consensus 389 ~~~~~~~~~~l--~~~l~~~l~~~~~~p~~v~~v~~~~lP------~t~~GKi~r~~~~ 439 (443)
T 2y4o_A 389 ASVTDGERAAL--ARELQHRIKTMVGVSSGVTVLAAGGIP------ATATGKARRVIDR 439 (443)
T ss_dssp TTCCHHHHHHH--HHHHHHHHHHHTCCCCEEEEECTTCSC------CCTTSCCCSEEEC
T ss_pred ccchhhHHHHH--HHHHHHHHHHHhCCceEEEEeCCCccc------CccCCcceEEEec
Confidence 1 1111111 15566788876 4888888885 565 9999999997543
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=3.1e-44 Score=387.16 Aligned_cols=340 Identities=16% Similarity=0.108 Sum_probs=259.4
Q ss_pred EEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHh---hcCCCCCCcEEEEecCh-H
Q 005874 227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT---IVPDLGSKDVYLAYLPL-A 302 (672)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~~d~~l~~~pl-~ 302 (672)
+.+.+++.... +.......++++++++|||||||.||+|++||+++......+.. .+ +++++|++++.+|+ .
T Consensus 70 ~~~~~~l~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~ 145 (437)
T 2y27_A 70 FTTKGDLRDSY---PFGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAA-GARRGDKVHVSYGYGL 145 (437)
T ss_dssp CBCHHHHHHTT---TTTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCSS
T ss_pred CCCHHHHHhcC---CCccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEcccccc
Confidence 34455655432 11223345689999999999999999999999999876654433 45 78999999999998 6
Q ss_pred hHHHHHHHHHHhHhCcEEeeC---CcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCchhHHH
Q 005874 303 HVLELVAENLIAGVGSAIGYG---TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKL 379 (672)
Q Consensus 303 h~~~~~~~~~~l~~G~~i~~~---~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~ 379 (672)
|..++...+.++..|+++++. ++..+.+. +++++||+++++|+++..|.+.........
T Consensus 146 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~------- 207 (437)
T 2y27_A 146 FTGGLGAHYGAERAGLTVIPFGGGQTEKQVQL-----------IQDFRPDIIMVTPSYMLSIADEIERQGLDP------- 207 (437)
T ss_dssp SHHHHHHHHHHHHTTCEEECCCSCCHHHHHHH-----------HHHHCCSEEEECHHHHHHHHHHHHHTTCCG-------
T ss_pred cccchHHHHHHHHcCCEEEeCCCCCHHHHHHH-----------HHHhCCCEEEECHHHHHHHHHHHHHcCCCc-------
Confidence 888877788889999999873 34444444 999999999999999999987544321100
Q ss_pred HHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccCcccccc
Q 005874 380 FDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCA 459 (672)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~ 459 (672)
..+++|.+++||+++++++.+.+++.+|+++++.||+||+++
T Consensus 208 --------------------------------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g 249 (437)
T 2y27_A 208 --------------------------------------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMG 249 (437)
T ss_dssp --------------------------------------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTE
T ss_pred --------------------------------------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcC
Confidence 013899999999999999999999988999999999999854
Q ss_pred c-ccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEe
Q 005874 460 G-GTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFY 538 (672)
Q Consensus 460 ~-~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~ 538 (672)
. ++..... .. ..++.|.++++++|+|++++..+ +.|+.|||+|+|. |++.| .++||+
T Consensus 250 ~~~~~~~~~-~~-~g~~~~~~~~~~~i~d~~~g~~~---~~g~~Gel~v~~~------------t~~~~-----~~~~y~ 307 (437)
T 2y27_A 250 PGVASECVE-TK-DGPTIWEDHFYPEIIDPETGEVL---PDGELGELVFTSL------------TKEAL-----PIIRYR 307 (437)
T ss_dssp EEEEECCTT-TC-SSCEECTTTEEEEEECTTTCCBC---CTTCCEEEEEEES------------SCSSS-----CCCSEE
T ss_pred CeeEEecCC-CC-CceeEccCceEEEEEcCCCCCCC---CCCCccEEEEecC------------CcCCc-----hhheee
Confidence 3 3332221 11 12556678999999994456554 4789999999983 23344 578999
Q ss_pred cCcEEEEcc-CceE-----EEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecC---CCCeEEEEEEcChhHH
Q 005874 539 TGDVGQVHA-DGCL-----EIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADP---FHSYCVALVVASQPAV 609 (672)
Q Consensus 539 TGDlg~~~~-dG~l-----~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~---~~~~~va~v~~~~~~~ 609 (672)
|||+|++++ ||.+ ++.||+||+||+ +|++|+|.+||++|.+||+|.+++|++.. ..+.++|+|+++++..
T Consensus 308 TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~ 386 (437)
T 2y27_A 308 TRDLTRLLPGTARTMRRMEKITGRSDDMMIV-RGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETA 386 (437)
T ss_dssp EEEEECEECCSSSSSCEECCCCEEGGGCEEE-TTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTT
T ss_pred cCCEEEEeCCCCCCccccCccccccCCeEEE-CCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCcc
Confidence 999999998 6985 999999999998 69999999999999999999998888743 2356999999886532
Q ss_pred ---HHHHHHcChhhhhcCCCCC-cceeEEEEee--cCCCCCCCccccccccChHH
Q 005874 610 ---EEWAAKQGIVGKNARLDKF-EIPAKIKLLS--YPWTSEAGLVTAALKIKREA 658 (672)
Q Consensus 610 ---~~~~~~~~~~~~~~~L~~~-~~p~~i~~~~--~~~~~~~~~~t~~gKi~R~~ 658 (672)
.+... ....+++.|+.+ .+|..|.+++ +.| +|+ ||++|..
T Consensus 387 ~~~~~~~~--l~~~l~~~l~~~~~~p~~v~~v~~~~lP------~t~-GKi~r~~ 432 (437)
T 2y27_A 387 PDTAAIQV--AKQALAYDIKSLIGVTAVINVLPVNGIE------RSV-GKARRVV 432 (437)
T ss_dssp TCHHHHHH--HHHHHHHHHHHHHCCCEEEEECCTTCSC------CCS-SSCCCEE
T ss_pred chhhhHHH--HHHHHHHHHHHhcCCceEEEEeCCCCcc------CCC-CcceEEE
Confidence 11111 115567888888 5888888885 555 999 9999964
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.95 E-value=2.7e-28 Score=256.47 Aligned_cols=247 Identities=15% Similarity=0.129 Sum_probs=170.5
Q ss_pred CCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhc--CCCCCCcEEEEecCh-HhHHHHHHHHHHhHhCcEEee-
Q 005874 247 PVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV--PDLGSKDVYLAYLPL-AHVLELVAENLIAGVGSAIGY- 322 (672)
Q Consensus 247 ~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~~d~~l~~~pl-~h~~~~~~~~~~l~~G~~i~~- 322 (672)
..++++++|+|||||||.||+|+++|+++.+....+...+ .+++++|++++.+|+ +|..++...+.++..|+.++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~ 167 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI 167 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc
Confidence 3678899999999999999999999999999887654332 267899999999999 999999888888999994433
Q ss_pred -CCccc---ccCc---------hhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHh
Q 005874 323 -GTPLT---LTDT---------SSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLS 389 (672)
Q Consensus 323 -~~~~~---l~~~---------~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (672)
++|.. +... .......+...++++++|+++++|+++..|++.....
T Consensus 168 ~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~--------------------- 226 (369)
T 3hgu_A 168 DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVV--------------------- 226 (369)
T ss_dssp CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHH---------------------
T ss_pred cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhh---------------------
Confidence 33330 0000 0000112222389999999999999999987642110
Q ss_pred hhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHH-HHh-CCceecccCcccccccccccCCC
Q 005874 390 AINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFIN-ICL-GAPIGQGYGLTETCAGGTFSEVD 467 (672)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~-~~~-~~~v~~~YG~TE~~~~~~~~~~~ 467 (672)
....+++|.+++||+++++++.+.++ +.+ ++++++.||+||+++++.....
T Consensus 227 --------------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~- 279 (369)
T 3hgu_A 227 --------------------------LQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI- 279 (369)
T ss_dssp --------------------------HHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-
T ss_pred --------------------------ccccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-
Confidence 00112799999999999999999999 888 8999999999999866532211
Q ss_pred CCCCCccCCC------cCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCc
Q 005874 468 DSSVGRVGAP------LPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGD 541 (672)
Q Consensus 468 ~~~~~~~G~p------~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGD 541 (672)
.++|.| .++++++|+|.+++..+ ++|+.|||+|++... +.+. -+|+|||
T Consensus 280 ----~~~G~~~~~~~~~~~~~v~ivD~~~g~~v---p~G~~GEl~vt~l~~------------~~~l------~ry~tgD 334 (369)
T 3hgu_A 280 ----TSESQQVIYDSFSPFITYDVVDSITAQTV---EYGERGNVIVTHLSP------------WAFY------PRVAERD 334 (369)
T ss_dssp ----CTTCSSCEEECCTTTEEEEEECTTTCSBC---CTTCEEEEEEEEEET------------TEEE------EEEEEEE
T ss_pred ----ccCCCcccccCCCCCeEEEEECCCCCcCC---CCCCceEEEEEEcCc------------cccc------ccccCCc
Confidence 148999 99999999994366655 489999999997431 1111 2689999
Q ss_pred EEEEccC--c-------eEEEEecCCCeEecCCce
Q 005874 542 VGQVHAD--G-------CLEIIDRKKDIVKLQHGE 567 (672)
Q Consensus 542 lg~~~~d--G-------~l~i~gR~~d~ik~~~G~ 567 (672)
++...+. | .+..++|.++..++. |.
T Consensus 335 ~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~-gv 368 (369)
T 3hgu_A 335 TAIRLPGVSGFAGDRLADIEPLKISEGRKVIE-GV 368 (369)
T ss_dssp EEEEECCSTTCSSCEEEEEEECC------------
T ss_pred eEEEecCCCCCcCcccccceeccccCCCceee-ec
Confidence 9987543 2 356677777777764 64
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=98.98 E-value=9e-11 Score=98.90 Aligned_cols=93 Identities=15% Similarity=0.045 Sum_probs=59.6
Q ss_pred ecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEEcChhHH---HHHHHHcChhhhhcCCCC-
Q 005874 555 DRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVVASQPAV---EEWAAKQGIVGKNARLDK- 627 (672)
Q Consensus 555 gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~~~~~~---~~~~~~~~~~~~~~~L~~- 627 (672)
.|.||+|++ +|.+|+|.+||+++.+||+|.+++|++.+++ +.++++|+..+... ....... ..+.+.+..
T Consensus 1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~--~~i~~~l~~~ 77 (109)
T 3lax_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALT--REITRQLKDE 77 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHH--HHHHHHHHHH
T ss_pred CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhH--HHHHHHHHHH
Confidence 489999998 5999999999999999999999998886544 35778887665421 1111000 222233322
Q ss_pred CcceeEEEEee--cCCCCCCCccccccccChH
Q 005874 628 FEIPAKIKLLS--YPWTSEAGLVTAALKIKRE 657 (672)
Q Consensus 628 ~~~p~~i~~~~--~~~~~~~~~~t~~gKi~R~ 657 (672)
+.++..+.+++ .+| +| +||++|-
T Consensus 78 ~gv~~~v~~v~~~~lP------rt-sGKi~Rv 102 (109)
T 3lax_A 78 ILVTPRVKLVPKGALP------KS-EGKAVRV 102 (109)
T ss_dssp HSSCCEEEEECTTCSC------CC----CCCE
T ss_pred hCCccceEEEcCCeec------CC-CCCcchh
Confidence 12444677775 354 88 7999883
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=98.98 E-value=3.4e-10 Score=95.20 Aligned_cols=90 Identities=11% Similarity=0.029 Sum_probs=58.4
Q ss_pred ecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEEcChhH-------HHHHHHHcChhhhhcC
Q 005874 555 DRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVVASQPA-------VEEWAAKQGIVGKNAR 624 (672)
Q Consensus 555 gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~~~~~-------~~~~~~~~~~~~~~~~ 624 (672)
||.||+|++ +|.+|+|.+||+++.+||+|.++++++.+++ +.++++|++ ++. ..+..... ...+.+.
T Consensus 1 GR~~D~Iiv-~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i-~~~l~~~ 77 (109)
T 3gxs_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREI-TRQLKDE 77 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHH-HHHHHHH
T ss_pred CCccCEEEE-CCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHH-HHHHHHh
Confidence 799999998 5999999999999999999998877664432 458888887 331 11111111 0222222
Q ss_pred CCCCcceeEEEEee--cCCCCCCCccccccccChH
Q 005874 625 LDKFEIPAKIKLLS--YPWTSEAGLVTAALKIKRE 657 (672)
Q Consensus 625 L~~~~~p~~i~~~~--~~~~~~~~~~t~~gKi~R~ 657 (672)
+..+..|.+++ .+| +| +||++|.
T Consensus 78 ---~~~~~~v~~v~~~~lP------rt-sGKi~R~ 102 (109)
T 3gxs_A 78 ---ILVTPRVKLVPKGALP------KS-EGKAVRV 102 (109)
T ss_dssp ---HSSCCEEEEECTTCSC------CC----CCCE
T ss_pred ---hCCceEEEEECCCCcc------CC-CCceEEE
Confidence 23334788887 555 99 9999884
No 39
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.64 E-value=2.3e-07 Score=100.17 Aligned_cols=148 Identities=18% Similarity=0.240 Sum_probs=91.7
Q ss_pred cCCc---eEEEEEcCCCCCHHHHHHHHHHh-CCcee-cccCcccccccccccCCCCCCCCccCC-CcCC-eEEEEEecCC
Q 005874 418 LGGR---IRFILSGGAPLSADTQRFINICL-GAPIG-QGYGLTETCAGGTFSEVDDSSVGRVGA-PLPC-SFIKLIDWPE 490 (672)
Q Consensus 418 ~~~~---lr~i~~gG~~l~~~~~~~~~~~~-~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~~-~~v~i~d~~~ 490 (672)
+.++ +..++.||. ......++..+ +.+++ .+|++||+... ++.......+..+. .+|+ .-+..++.++
T Consensus 300 lWPnlk~l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~g--i~~~p~~~p~~~~~~L~p~~~ffEFIP~~~ 374 (609)
T 4b2g_A 300 IWPNTKYLDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECYFG--LNLNPMSKPSEVSYTIMPNMAYFEFLPHEH 374 (609)
T ss_dssp HSTTCCEEEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCEEE--ECSCTTSCGGGCCEEECTTSCEEEEEEGGG
T ss_pred hCCCCcEEEEEccCCh---HHHHHHHHHHcCCCccccCcccccceeee--eecCCCCCcccCceeecCCcEEEEEEeccc
Confidence 3466 445555663 33345555544 67776 99999996432 22211111122222 1222 4455555333
Q ss_pred C------Cc------ccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEcc----CceEEEE
Q 005874 491 G------GY------LTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHA----DGCLEII 554 (672)
Q Consensus 491 ~------~~------~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~----dG~l~i~ 554 (672)
. .. +...+.|+.+||.|+.. .|.| -|++||+.++.. ..++.|+
T Consensus 375 ~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~---~GL~------------------RYr~GD~v~v~~f~~~~p~i~~~ 433 (609)
T 4b2g_A 375 SSIPLSRDSPPRLVDLAHVEVGKEYELVITTY---AGLY------------------RYRVGDILRVTGFHNSAPQFHFV 433 (609)
T ss_dssp TTSCCCSSSCCCCEEGGGCCTTCEEEEEEECT---TSCC------------------SEEEEEEEEEEEEETTEEEEEEE
T ss_pred cccccccCCCCccccHhHcCCCCeEEEehhhh---hhhh------------------heecCCEEEEeecCCCCcEEEEE
Confidence 2 10 12356889999999754 3444 399999999973 4689999
Q ss_pred ecCCCeEecCCceeeccHHHHHHHhc-C-----cc--cceEEEEec
Q 005874 555 DRKKDIVKLQHGEYVSLGKVEAALIV-S-----PY--VDNIMMHAD 592 (672)
Q Consensus 555 gR~~d~ik~~~G~~v~p~~iE~~l~~-~-----~~--V~~~~V~g~ 592 (672)
||.++++.+ .|+++++.+||+++.+ + .+ |.|-.++.+
T Consensus 434 gR~~~~l~~-~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d 478 (609)
T 4b2g_A 434 RRKNVLLSI-DSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFAD 478 (609)
T ss_dssp EETTCCBCS-SSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEE
T ss_pred EecCCeEEc-cccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecC
Confidence 999999997 5999999999999952 2 22 556665554
No 40
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.58 E-value=3.1e-07 Score=98.98 Aligned_cols=136 Identities=18% Similarity=0.217 Sum_probs=87.7
Q ss_pred cCCc---eEEEEEcCCCCCHHHHHHHHHHh-CCcee-cccCcccccccccccCCCCCCCCccCCC-cCC-eEEEEEecCC
Q 005874 418 LGGR---IRFILSGGAPLSADTQRFINICL-GAPIG-QGYGLTETCAGGTFSEVDDSSVGRVGAP-LPC-SFIKLIDWPE 490 (672)
Q Consensus 418 ~~~~---lr~i~~gG~~l~~~~~~~~~~~~-~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~~G~p-~~~-~~v~i~d~~~ 490 (672)
+.++ +..+++||. ......++..+ +.+++ .+|++||+... ++..........|.. +|+ +-+..++.++
T Consensus 295 lWPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~g--i~~~p~~~~~~~~~~L~~~~~ffEFip~~~ 369 (581)
T 4eql_A 295 LWPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETTFG--INLDPLCKPEDVSYTFMPNMSYFEFIPMDG 369 (581)
T ss_dssp HSTTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCEEE--ECSCTTSCGGGCCEEECTTSSEEEEEECST
T ss_pred hCCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccceee--eccCCCCCcccCceeecCCcEEEEEEeccc
Confidence 4457 556666773 33345555554 67777 99999996322 222111111223322 222 4455665333
Q ss_pred CC-----cccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEcc----CceEEEEecCCCeE
Q 005874 491 GG-----YLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHA----DGCLEIIDRKKDIV 561 (672)
Q Consensus 491 ~~-----~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~----dG~l~i~gR~~d~i 561 (672)
.+ .+...+.|+.+||.++..+ |.| -|++||+.++.. ..++.|+||.++++
T Consensus 370 ~~~~~~v~l~eVe~G~~YelViTt~~---GL~------------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l 428 (581)
T 4eql_A 370 GDKNDVVDLEDVKLGCTYEPVVTNFA---GLY------------------RMRVGDIVLVTGFYNNAPQFKFVRRENVVL 428 (581)
T ss_dssp TCCSSCEEGGGCCTTCEEEEEEECSS---SCC------------------SEECCEEEEEEEEETTEEEEEEEEETTEEE
T ss_pred cCCCcEeCHHHcCCCceEEEEEeecc---cee------------------eEEcCCEEEEcccCCCCcEEEEEEecCCEE
Confidence 21 1223568899999998753 322 499999999975 45899999999999
Q ss_pred ecCCceeeccHHHHHHHhc
Q 005874 562 KLQHGEYVSLGKVEAALIV 580 (672)
Q Consensus 562 k~~~G~~v~p~~iE~~l~~ 580 (672)
.+ .|+++++++||+++.+
T Consensus 429 ~~-~Gekl~~~~v~~al~~ 446 (581)
T 4eql_A 429 SI-DSDKTNEEDLFKAVSQ 446 (581)
T ss_dssp CS-SSCCEEHHHHHHHHHH
T ss_pred Ee-eeeECCHHHHHHHHHH
Confidence 98 5999999999999963
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.45 E-value=1.4e-06 Score=93.62 Aligned_cols=162 Identities=16% Similarity=0.131 Sum_probs=96.2
Q ss_pred HcCCceEEE--EEcCCCCCHHHHHHHHHHh-CCcee-cccCcccccccccccCCCCCCCCccCC-CcCC-eEEEEEecCC
Q 005874 417 ILGGRIRFI--LSGGAPLSADTQRFINICL-GAPIG-QGYGLTETCAGGTFSEVDDSSVGRVGA-PLPC-SFIKLIDWPE 490 (672)
Q Consensus 417 ~~~~~lr~i--~~gG~~l~~~~~~~~~~~~-~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~~-~~v~i~d~~~ 490 (672)
.+.++++.| +.+|.. ......++..+ +.+++ .+|++||+... ++.......+..+. .+|+ .-+..++.++
T Consensus 299 ~lWPnl~~i~~~~~G~~--~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~g--i~~~p~~~~~~~~~~L~p~~~ffEFiP~~~ 374 (581)
T 4epl_A 299 ALFPNAKYVYGIMTGSM--EPYVPKLRHYAGDLPLVSHDYGSSEGWIA--ANVTPRLSPEEATFAVIPNLGYFEFLPVSE 374 (581)
T ss_dssp HHCTTCCCEEEECSGGG--GGGHHHHHHHHTTSCEEECCEEETTEEEE--ECCCTTSCTTTCCEEECTTSCEEEEEEC--
T ss_pred HhCCCCceEEEEeCCCh--HHHHHHHHHHcCCCccccCceeccceeee--eecCCCCCccccceeecCCcEEEEEEeccc
Confidence 455788532 334422 22345555555 67777 99999996432 22222222222222 2233 3344454322
Q ss_pred CC-------cccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEccC----ceEEEEecCCC
Q 005874 491 GG-------YLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHAD----GCLEIIDRKKD 559 (672)
Q Consensus 491 ~~-------~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~d----G~l~i~gR~~d 559 (672)
.+ .+...+.|+.+||.++..+ |.| -|++||+.++..- .++.|+||.++
T Consensus 375 ~~~~~~~~v~l~eve~G~~YelviTt~~---GL~------------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~ 433 (581)
T 4epl_A 375 TGEGEEKPVGLTQVKIGEEYEVVITNYA---GLY------------------RYRLGDVVKVIGFYNNTPQLKFICRRNL 433 (581)
T ss_dssp -----CCCEEGGGCCTTCEEEEEEESTT---SCS------------------SEEEEEEEEEEEEETTEEEEEEEEETTC
T ss_pred ccCCCCceeeHHHcCCCCeEEEEEeecc---cee------------------eEEcCCEEEEecccCCCcEEEEEeecCC
Confidence 21 1223578899999998653 322 4999999998642 57999999999
Q ss_pred eEecCCceeeccHHHHHHHhc------Cc--ccceEEEEecCCC--CeEEEEEEc
Q 005874 560 IVKLQHGEYVSLGKVEAALIV------SP--YVDNIMMHADPFH--SYCVALVVA 604 (672)
Q Consensus 560 ~ik~~~G~~v~p~~iE~~l~~------~~--~V~~~~V~g~~~~--~~~va~v~~ 604 (672)
++.+. |+++++.+||+++.+ .. .|.|-.++.+... .+-+.+...
T Consensus 434 ~l~~~-Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~hyv~~wE~ 487 (581)
T 4epl_A 434 ILSIN-IDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGHYAIFWEI 487 (581)
T ss_dssp CBCSS-SCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSCEEEEEEEE
T ss_pred eEEee-eeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCCcEEEEEee
Confidence 99985 999999999999953 22 3566666664322 344444553
No 42
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=92.68 E-value=1.4 Score=46.09 Aligned_cols=112 Identities=13% Similarity=-0.014 Sum_probs=86.0
Q ss_pred CCcc--EEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCC--HHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhc
Q 005874 101 LGEY--EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTR--AEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNE 176 (672)
Q Consensus 101 ~~~~--~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns--~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~ 176 (672)
+|.. ..+|.+.+...+..++..+...|+.+++++..+++-+ ...+...++++..|++++++... .++.+...+++
T Consensus 104 TG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~ 182 (443)
T 2y4o_A 104 TGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRD 182 (443)
T ss_dssp SSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHH
T ss_pred CCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHH
Confidence 4543 4679999988888888888788999999999998853 44455678888999999887664 78899999999
Q ss_pred ccceEEEECccchHHHHhhhc------CCCCccEEEEecCCCc
Q 005874 177 TEVTTVICGSKELKKLVDLSG------QLDTVKHVICMDANIP 213 (672)
Q Consensus 177 ~~~~~vi~~~~~~~~l~~~~~------~~~~l~~ii~~~~~~~ 213 (672)
.+++++++.+..+..+.+... ..+.++.+++..+..+
T Consensus 183 ~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~ 225 (443)
T 2y4o_A 183 FEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWT 225 (443)
T ss_dssp HCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCC
T ss_pred hCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCC
Confidence 999999999987766655321 1357777777665543
No 43
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=91.97 E-value=1.7 Score=45.39 Aligned_cols=109 Identities=11% Similarity=0.015 Sum_probs=84.7
Q ss_pred cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCC--CHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceE
Q 005874 104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADT--RAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTT 181 (672)
Q Consensus 104 ~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~n--s~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 181 (672)
...+|.+.+...+..++..+...|+.++|++..+++- ....+...++++..|++++++... .++.+...+++.++++
T Consensus 107 ~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~ 185 (437)
T 2y27_A 107 VVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGGG-QTEKQVQLIQDFRPDI 185 (437)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCSC-CHHHHHHHHHHHCCSE
T ss_pred EEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHhCCCE
Confidence 3568999998888888888878899999999999885 344455678889999999877654 7889999999999999
Q ss_pred EEECccchHHHHhhhc--C----CCCccEEEEecCCCc
Q 005874 182 VICGSKELKKLVDLSG--Q----LDTVKHVICMDANIP 213 (672)
Q Consensus 182 vi~~~~~~~~l~~~~~--~----~~~l~~ii~~~~~~~ 213 (672)
+++.+..+..+.+... . .+.++.+++..+..+
T Consensus 186 l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~ 223 (437)
T 2y27_A 186 IMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWT 223 (437)
T ss_dssp EEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCC
T ss_pred EEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCC
Confidence 9999988776655421 1 356777777665543
No 44
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=91.61 E-value=1.5 Score=45.80 Aligned_cols=109 Identities=11% Similarity=-0.058 Sum_probs=86.0
Q ss_pred cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCC--CHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceE
Q 005874 104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADT--RAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTT 181 (672)
Q Consensus 104 ~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~n--s~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 181 (672)
...+|.+.+...+..++..+...|+.+++++..+++- ....+..+++++..|+++++.++. .++.+...+++.++++
T Consensus 103 ~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~i~~~~~t~ 181 (436)
T 3qov_A 103 VIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG-NSKRQIKFISDFKTTA 181 (436)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHTCCE
T ss_pred EEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHHCCCE
Confidence 3568999999989888888888899999999999874 345556678889999998887654 6788999999999999
Q ss_pred EEECccchHHHHhhhc------CCCCccEEEEecCCCc
Q 005874 182 VICGSKELKKLVDLSG------QLDTVKHVICMDANIP 213 (672)
Q Consensus 182 vi~~~~~~~~l~~~~~------~~~~l~~ii~~~~~~~ 213 (672)
++..+..+..+.+... .++.++.+++..+..+
T Consensus 182 ~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~ 219 (436)
T 3qov_A 182 LHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHT 219 (436)
T ss_dssp EECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCC
T ss_pred EEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCC
Confidence 9999987776655421 1457888887665543
No 45
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=81.23 E-value=24 Score=37.13 Aligned_cols=103 Identities=11% Similarity=0.094 Sum_probs=76.5
Q ss_pred EEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCC-HHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEE
Q 005874 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTR-AEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVI 183 (672)
Q Consensus 105 ~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns-~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 183 (672)
..+|.+.+...+..+.. ..++.+++++..++|-. .--+..+++++..|++++..+. ..++.+...+++.+++.++
T Consensus 181 v~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~ 256 (501)
T 3ipl_A 181 VPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDK-FNAEQILTMIKNERITHIS 256 (501)
T ss_dssp EEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS-CCHHHHHHHHHHSCCCEEE
T ss_pred EEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCCC-CCHHHHHHHHHHcCCcEEE
Confidence 46798888777666543 34889999999988865 3333446778889999887764 6789999999999999999
Q ss_pred ECccchHHHHhhhcC-CCCccEEEEecCC
Q 005874 184 CGSKELKKLVDLSGQ-LDTVKHVICMDAN 211 (672)
Q Consensus 184 ~~~~~~~~l~~~~~~-~~~l~~ii~~~~~ 211 (672)
+....+..+.+.... ...++.+++..+.
T Consensus 257 ~~P~~~~~l~~~~~~~~~~lr~i~~gG~~ 285 (501)
T 3ipl_A 257 LVPQTLNWLMQQGLHEPYNLQKILLGGAK 285 (501)
T ss_dssp ECHHHHHHHHHHTCCSCTTCCEEEECSSC
T ss_pred chHHHHHHHHhcCCCCcCcccEEEEeCCC
Confidence 999888777665422 2267777665544
No 46
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=80.93 E-value=14 Score=39.73 Aligned_cols=107 Identities=15% Similarity=0.062 Sum_probs=77.7
Q ss_pred cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH--HHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceE
Q 005874 104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAE--WFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTT 181 (672)
Q Consensus 104 ~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e--~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 181 (672)
-..+|.+.+...+......+...++.+++++..++|-+.. +...+++++ .|++.+.++ ...++.+...+++.+++.
T Consensus 209 gv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 286 (548)
T 2d1s_A 209 GVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTS 286 (548)
T ss_dssp CEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEE
T ss_pred EEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcE
Confidence 3578999887776665544333588899999988886533 333456777 999988775 467899999999999999
Q ss_pred EEECccchHHHHhhh----cCCCCccEEEEecCCC
Q 005874 182 VICGSKELKKLVDLS----GQLDTVKHVICMDANI 212 (672)
Q Consensus 182 vi~~~~~~~~l~~~~----~~~~~l~~ii~~~~~~ 212 (672)
++..+..+..+.+.. ..++.++.+++..+..
T Consensus 287 ~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l 321 (548)
T 2d1s_A 287 VILVPTLFAILNKSELLNKYDLSNLVEIASGGAPL 321 (548)
T ss_dssp EEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCC
T ss_pred EEecHHHHHHHHhCcccccccccceeEEEEcCccC
Confidence 999998877776532 2356777777755543
No 47
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=78.70 E-value=33 Score=36.46 Aligned_cols=106 Identities=9% Similarity=-0.063 Sum_probs=78.6
Q ss_pred cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH--HH-HHHHHHhCCcEEEecCCCCCHHHHHHHHhcccce
Q 005874 104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEW--FV-ALQGCFRRNVTVVTIYASLGEEALCYSLNETEVT 180 (672)
Q Consensus 104 ~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e~--~~-~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~ 180 (672)
-..+|.+.+...+...... .++.+++++...+|-+..+ .. .+++++..|++++..+ ...++.+...+++.+++
T Consensus 199 gV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t 274 (539)
T 1mdb_A 199 LIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP-SPSPDDAFPLIEREKVT 274 (539)
T ss_dssp EEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SSSHHHHHHHHHHHTCS
T ss_pred EEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECC-CCCHHHHHHHHHHcCCe
Confidence 3568998887776655443 3788999999988865333 32 4788899999988765 46788999999999999
Q ss_pred EEEECccchHHHHhhh----cCCCCccEEEEecCCCc
Q 005874 181 TVICGSKELKKLVDLS----GQLDTVKHVICMDANIP 213 (672)
Q Consensus 181 ~vi~~~~~~~~l~~~~----~~~~~l~~ii~~~~~~~ 213 (672)
.++.....+..+.+.. ..+++++.+++..+..+
T Consensus 275 ~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~ 311 (539)
T 1mdb_A 275 ITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFS 311 (539)
T ss_dssp EEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCC
T ss_pred EEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCC
Confidence 9999988776665432 34577888887665543
No 48
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=74.26 E-value=13 Score=37.34 Aligned_cols=88 Identities=10% Similarity=0.004 Sum_probs=64.6
Q ss_pred EEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCC--HHHHHHHHHHHhCCcEEEecCCCCCHH--------------
Q 005874 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTR--AEWFVALQGCFRRNVTVVTIYASLGEE-------------- 168 (672)
Q Consensus 105 ~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns--~e~~~~~lA~~~~G~~~vpl~~~~~~~-------------- 168 (672)
..+|.+.+...+..++..+...|+.+++++..++|-+ ..-+...+++...|+.+++.. ..+.
T Consensus 109 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~~ 186 (369)
T 3hgu_A 109 VVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTATV 186 (369)
T ss_dssp EEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHHH
T ss_pred EEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhhh
Confidence 4578888888888777777778999999999998862 333444555688898666543 3344
Q ss_pred ---------HHHHHHhcccceEEEECccchHHHHh
Q 005874 169 ---------ALCYSLNETEVTTVICGSKELKKLVD 194 (672)
Q Consensus 169 ---------~l~~~l~~~~~~~vi~~~~~~~~l~~ 194 (672)
.+...+++.+++++++....+..+.+
T Consensus 187 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~ 221 (369)
T 3hgu_A 187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLK 221 (369)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHh
Confidence 66679999999999999877665543
No 49
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=74.18 E-value=35 Score=36.05 Aligned_cols=104 Identities=13% Similarity=0.066 Sum_probs=75.8
Q ss_pred EEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHH--HHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEE
Q 005874 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWF--VALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTV 182 (672)
Q Consensus 105 ~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e~~--~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 182 (672)
..+|.+.+...+..++.. .++.+++++...+|-....- ..+++++ .|++.+... ...++.+...+++.+++.+
T Consensus 188 V~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~ 262 (517)
T 3r44_A 188 VVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISMP-QFDATKVWSLIVEERVCIG 262 (517)
T ss_dssp EEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEECS-SCCHHHHHHHHHHTTCCEE
T ss_pred eeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEeC-CCCHHHHHHHHHHhCCeEE
Confidence 468898887777666544 38899999999888664332 2344555 888887764 5788999999999999999
Q ss_pred EECccchHHHHhh----hcCCCCccEEEEecCCCc
Q 005874 183 ICGSKELKKLVDL----SGQLDTVKHVICMDANIP 213 (672)
Q Consensus 183 i~~~~~~~~l~~~----~~~~~~l~~ii~~~~~~~ 213 (672)
++....+..+.+. ...++.++.+++..+..+
T Consensus 263 ~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~ 297 (517)
T 3r44_A 263 GAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMP 297 (517)
T ss_dssp EECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCC
T ss_pred EeHHHHHHHHHhCcccccCCCCcccEEEECCCCCC
Confidence 9999877666543 234567888877665543
No 50
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=73.01 E-value=51 Score=35.06 Aligned_cols=106 Identities=11% Similarity=0.025 Sum_probs=78.5
Q ss_pred cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHH---HHHHHHhCCcEEEecCCCCCHHHHHHHHhcccce
Q 005874 104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFV---ALQGCFRRNVTVVTIYASLGEEALCYSLNETEVT 180 (672)
Q Consensus 104 ~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e~~~---~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~ 180 (672)
-..+|.+.+...+...+.. .++.+++++..++|-+..+-. .+++++..|++++.... ..+..+...+++.+++
T Consensus 208 gv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t 283 (544)
T 3o83_A 208 LIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPN-PEPLNCFSIIQRHQVN 283 (544)
T ss_dssp EEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSS-CCHHHHHHHHHHHTCC
T ss_pred eEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCC-CCHHHHHHHHHHHCCC
Confidence 3568998888777666543 488999999999886544332 47888899998887654 5788889999999999
Q ss_pred EEEECccchHHHHhhhc----CCCCccEEEEecCCCc
Q 005874 181 TVICGSKELKKLVDLSG----QLDTVKHVICMDANIP 213 (672)
Q Consensus 181 ~vi~~~~~~~~l~~~~~----~~~~l~~ii~~~~~~~ 213 (672)
.++.....+..+.+... .++.++.+++..+..+
T Consensus 284 ~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~ 320 (544)
T 3o83_A 284 MASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFP 320 (544)
T ss_dssp EEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCC
T ss_pred EEEechHHHHHHHhchhhccccCCcceEEEEcCCCCC
Confidence 99999987766655432 3467888877665543
No 51
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=71.77 E-value=22 Score=37.44 Aligned_cols=104 Identities=16% Similarity=0.184 Sum_probs=76.4
Q ss_pred EEeeHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEcCCCHHH--HHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccce
Q 005874 105 EWLTYGQAFETICNFASGLAQLGH--KKEERVAIFADTRAEW--FVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVT 180 (672)
Q Consensus 105 ~~~Ty~el~~~a~~la~~L~~~g~--~~g~~V~i~~~ns~e~--~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~ 180 (672)
..+|.+.+...+..++. ..++ .+++++...+|-.... ...+++++..|++++..+. ..++.+...+++.+++
T Consensus 171 V~~sh~~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t 246 (504)
T 1t5h_X 171 AIIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEE-FRPVDALQLVQQEQVT 246 (504)
T ss_dssp EEEEGGGHHHHHHHHHH---TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSS-CCHHHHHHHHHHHTCC
T ss_pred EEecHHHHHHHHHHHHH---hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCC-CCHHHHHHHHHHhCCe
Confidence 46788888766665543 3467 7788988888865433 2457888999999887765 6788999999999999
Q ss_pred EEEECccchHHHHhhh-c-----CCCCccEEEEecCCC
Q 005874 181 TVICGSKELKKLVDLS-G-----QLDTVKHVICMDANI 212 (672)
Q Consensus 181 ~vi~~~~~~~~l~~~~-~-----~~~~l~~ii~~~~~~ 212 (672)
.++..+..+..+.+.. . .+++++.+++..+..
T Consensus 247 ~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l 284 (504)
T 1t5h_X 247 SLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATM 284 (504)
T ss_dssp EEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTC
T ss_pred EEEeChHHHHHHHhhhccccccccCccccEEEEcCCcC
Confidence 9999998887776543 1 346777777755543
No 52
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=71.53 E-value=26 Score=34.99 Aligned_cols=120 Identities=14% Similarity=0.112 Sum_probs=80.5
Q ss_pred cCCCCceEEeeccccccccccCCcccccccCCcc--EEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCC-HHHHHH
Q 005874 71 HGDKYLLGTRQLISRETEVADNGRSFEKLHLGEY--EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTR-AEWFVA 147 (672)
Q Consensus 71 ~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns-~e~~~~ 147 (672)
++|.+|++..- .|. +|.. ..+|.+.+...+..++.. .++.++|++..++|-+ ..-+..
T Consensus 35 ~~d~~a~Il~T----------SGT------TG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~gl~~ 95 (358)
T 4gs5_A 35 LGGAREFVLHT----------SGS------TGMPKPITVTRAQLAASAAMTGKA---LSLGPGTRALVCLNVGYIAGLMM 95 (358)
T ss_dssp HHTCSEEEEEE----------ECT------TSSEEEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHH
T ss_pred CCCCCEEEEEC----------Ccc------cccCcEEEEeHHHHHHHHHHHHHH---hCCCCCCEEEEECChHHHHHHHH
Confidence 56778876532 454 4433 468999888777665543 4889999999988865 333445
Q ss_pred HHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhh---cCCCCccEEEEecCCC
Q 005874 148 LQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLS---GQLDTVKHVICMDANI 212 (672)
Q Consensus 148 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~---~~~~~l~~ii~~~~~~ 212 (672)
++..+..|+..+...+...+ ...+++.+++.+...+..+..+.+.. ..+++++.+++-.+..
T Consensus 96 ~~~~l~~g~~~~~~~~~~~~---~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG~~l 160 (358)
T 4gs5_A 96 LVRGMELDWELTVTEPTANP---LAGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLGGAPV 160 (358)
T ss_dssp HHHHHHHTCEEEEECCCSCT---TTTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEECSSCC
T ss_pred HHHHHHhCcEEEecCccccH---HHHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEcccCC
Confidence 56667778877777665432 45678899999999888776665432 2345677777755543
No 53
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=71.11 E-value=40 Score=35.51 Aligned_cols=105 Identities=7% Similarity=-0.032 Sum_probs=76.7
Q ss_pred EEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH-HHHHHHHHHhCCcEEEecCCC--CCHHHHHHHHhcccceE
Q 005874 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAE-WFVALQGCFRRNVTVVTIYAS--LGEEALCYSLNETEVTT 181 (672)
Q Consensus 105 ~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e-~~~~~lA~~~~G~~~vpl~~~--~~~~~l~~~l~~~~~~~ 181 (672)
..+|.+.+...+..++. ..++.+++++..++|-+.. .+..+++++..|++++.+... ..++.+...+++.+++.
T Consensus 161 V~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~ 237 (511)
T 3e7w_A 161 VQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNV 237 (511)
T ss_dssp EEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSE
T ss_pred EEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcE
Confidence 46888888776665543 3578899999999886633 344578889999998877653 56788999999999999
Q ss_pred EEECccchHHHHhhh----cCCCCccEEEEecCCC
Q 005874 182 VICGSKELKKLVDLS----GQLDTVKHVICMDANI 212 (672)
Q Consensus 182 vi~~~~~~~~l~~~~----~~~~~l~~ii~~~~~~ 212 (672)
++..+..+..+.... ..++.++.+++..+..
T Consensus 238 ~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l 272 (511)
T 3e7w_A 238 WTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVL 272 (511)
T ss_dssp EEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCC
T ss_pred EEecHHHHHHHHhccccccccCCcccEEEEecCCC
Confidence 999988776665432 2345677777655443
No 54
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=70.00 E-value=27 Score=36.92 Aligned_cols=105 Identities=10% Similarity=-0.017 Sum_probs=76.8
Q ss_pred EEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCH-HHHHHHHHHHhCCcEEEecCCC--CCHHHHHHHHhcccceE
Q 005874 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRA-EWFVALQGCFRRNVTVVTIYAS--LGEEALCYSLNETEVTT 181 (672)
Q Consensus 105 ~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~-e~~~~~lA~~~~G~~~vpl~~~--~~~~~l~~~l~~~~~~~ 181 (672)
..+|.+.+...+..... ..++.+++++..++|-+. -.+..+++++..|++.+.++.. ..++.+...+++.+++.
T Consensus 162 v~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~ 238 (512)
T 3fce_A 162 VQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQV 238 (512)
T ss_dssp EEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCE
T ss_pred EEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcE
Confidence 46788888776655443 358899999999988653 2345678889999998887653 56788999999999999
Q ss_pred EEECccchHHHHhhh----cCCCCccEEEEecCCC
Q 005874 182 VICGSKELKKLVDLS----GQLDTVKHVICMDANI 212 (672)
Q Consensus 182 vi~~~~~~~~l~~~~----~~~~~l~~ii~~~~~~ 212 (672)
++..+.....+.... ..++.++.+++..+..
T Consensus 239 ~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l 273 (512)
T 3fce_A 239 WTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVL 273 (512)
T ss_dssp EEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCC
T ss_pred EEecHHHHHHHHhhccccchhCccccEEEEecCcC
Confidence 999988776554322 2345677777755543
No 55
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=68.15 E-value=74 Score=34.43 Aligned_cols=106 Identities=11% Similarity=-0.008 Sum_probs=77.6
Q ss_pred cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH--HHH-HHHHHHhCCcEEEecCCCCCHHHHHHHHhcccce
Q 005874 104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAE--WFV-ALQGCFRRNVTVVTIYASLGEEALCYSLNETEVT 180 (672)
Q Consensus 104 ~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e--~~~-~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~ 180 (672)
...+|.+.+...+...... .++.+++++..++|-+.. +.. .+++++..|++++.... ..+..+...+++.+++
T Consensus 201 gV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t 276 (617)
T 3rg2_A 201 LIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAAD-PSATLCFPLIEKHQVN 276 (617)
T ss_dssp EEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSS-CCHHHHHHHHHHTTCC
T ss_pred EeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCC-CCHHHHHHHHHHhCCc
Confidence 3568898887776665544 378899999999885533 332 47788888998887654 5678888899999999
Q ss_pred EEEECccchHHHHhhh------cCCCCccEEEEecCCCc
Q 005874 181 TVICGSKELKKLVDLS------GQLDTVKHVICMDANIP 213 (672)
Q Consensus 181 ~vi~~~~~~~~l~~~~------~~~~~l~~ii~~~~~~~ 213 (672)
.+......+..+.+.. ..++.++.+++..+..+
T Consensus 277 ~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~ 315 (617)
T 3rg2_A 277 VTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLS 315 (617)
T ss_dssp EEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCC
T ss_pred EEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCC
Confidence 9999998776665432 14567888887666543
No 56
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=68.01 E-value=29 Score=37.03 Aligned_cols=107 Identities=9% Similarity=-0.067 Sum_probs=75.3
Q ss_pred EEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH-HHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEE
Q 005874 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEW-FVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVI 183 (672)
Q Consensus 105 ~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e~-~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 183 (672)
..+|.+.+...+.... .....++.++|++...+|-.... +...++++..|++.+...+...++.+...+++.++++++
T Consensus 194 V~~sh~~l~~~~~~~~-~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~ 272 (541)
T 1v25_A 194 VVYSHRALVLHSLAAS-LVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTA 272 (541)
T ss_dssp EEEEHHHHHHHHHHTT-STTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEE
T ss_pred eeeehHHHHHHHhhhh-hcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEe
Confidence 4678887754433211 11234788999999888865332 234577788899988877667899999999999999999
Q ss_pred ECccchHHHHhhh----cCCCCccEEEEecCCC
Q 005874 184 CGSKELKKLVDLS----GQLDTVKHVICMDANI 212 (672)
Q Consensus 184 ~~~~~~~~l~~~~----~~~~~l~~ii~~~~~~ 212 (672)
..+..+..+.+.. ..++.++.+++..+..
T Consensus 273 ~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l 305 (541)
T 1v25_A 273 GVPTVWLALADYLESTGHRLKTLRRLVVGGSAA 305 (541)
T ss_dssp ECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCC
T ss_pred cchHHHHHHHhhhhccCCcchhccEEEECCCCC
Confidence 9988776665432 3457788887755543
No 57
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=67.53 E-value=35 Score=37.39 Aligned_cols=111 Identities=11% Similarity=0.048 Sum_probs=76.7
Q ss_pred CCcc--EEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH-H-HHHHHHHhCCcEEEecCCC---CCHHHHHHH
Q 005874 101 LGEY--EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEW-F-VALQGCFRRNVTVVTIYAS---LGEEALCYS 173 (672)
Q Consensus 101 ~~~~--~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e~-~-~~~lA~~~~G~~~vpl~~~---~~~~~l~~~ 173 (672)
+|.. ..+|.+.+...+.... -...+++++|++..+.+-+... . ..+++.+..|++.+..+.. ..++.+..+
T Consensus 268 TG~PKgV~~sh~~~~~~~~~~~--~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~ 345 (652)
T 1pg4_A 268 TGKPKGVLHTTGGYLVYAATTF--KYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQV 345 (652)
T ss_dssp SSSCEEEEEESHHHHHHHHHHH--HHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHH
T ss_pred CCCCceEEECchHHHHHHHHHH--HHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHH
Confidence 5544 3567776654432211 1235889999998888765332 2 4567899999999887642 467899999
Q ss_pred HhcccceEEEECccchHHHHhhhc------CCCCccEEEEecCCCc
Q 005874 174 LNETEVTTVICGSKELKKLVDLSG------QLDTVKHVICMDANIP 213 (672)
Q Consensus 174 l~~~~~~~vi~~~~~~~~l~~~~~------~~~~l~~ii~~~~~~~ 213 (672)
+++.+++++++.+..+..+.+... .+++++.+++..+..+
T Consensus 346 i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~ 391 (652)
T 1pg4_A 346 VDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPIN 391 (652)
T ss_dssp HHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCC
T ss_pred HHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCC
Confidence 999999999999988777765432 3567888887666543
No 58
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=65.85 E-value=52 Score=35.29 Aligned_cols=106 Identities=7% Similarity=0.086 Sum_probs=73.7
Q ss_pred EEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH--HHHHHHHHhCCcEEEecCC-CCCHHHHHHHHhcccceE
Q 005874 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEW--FVALQGCFRRNVTVVTIYA-SLGEEALCYSLNETEVTT 181 (672)
Q Consensus 105 ~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e~--~~~~lA~~~~G~~~vpl~~-~~~~~~l~~~l~~~~~~~ 181 (672)
..+|.+ +........ ....++.++|++..++|-+... ...+++++..|++.+.... ...++.+...+++.+++.
T Consensus 224 V~~sh~-~~~~~~~~~--~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~ 300 (570)
T 3c5e_A 224 AEHSYS-SLGLKAKMD--AGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKS 300 (570)
T ss_dssp EEEEHH-HHHHHHHHH--TTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCE
T ss_pred EEechH-HHHhhhhhh--hhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeE
Confidence 467887 433111111 1445889999999888866433 3356788888988877653 678899999999999999
Q ss_pred EEECccchHHHHhhh---cCCCCccEEEEecCCCc
Q 005874 182 VICGSKELKKLVDLS---GQLDTVKHVICMDANIP 213 (672)
Q Consensus 182 vi~~~~~~~~l~~~~---~~~~~l~~ii~~~~~~~ 213 (672)
++..+..+..+.+.. ..++.++.+++..+...
T Consensus 301 ~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe~l~ 335 (570)
T 3c5e_A 301 MMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLL 335 (570)
T ss_dssp EEECHHHHHHHHTSCTTTCCCTTCCEEEEESSCCC
T ss_pred EeccHHHHHHHHhccccccccccceEEEEcCCcCC
Confidence 999998877766531 13467777777665543
No 59
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=65.35 E-value=31 Score=36.65 Aligned_cols=112 Identities=10% Similarity=0.042 Sum_probs=79.4
Q ss_pred CCcc--EEeeHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEcCCCH--HHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHh
Q 005874 101 LGEY--EWLTYGQAFETICNFASGLA-QLGHKKEERVAIFADTRA--EWFVALQGCFRRNVTVVTIYASLGEEALCYSLN 175 (672)
Q Consensus 101 ~~~~--~~~Ty~el~~~a~~la~~L~-~~g~~~g~~V~i~~~ns~--e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~ 175 (672)
+|.. ..+|.+.+...+........ ..++.+++++...+|-.. .+...+++.+..|++++..+ ...++.+...++
T Consensus 190 TG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~ 268 (536)
T 3ni2_A 190 TGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMP-KFEIGSLLGLIE 268 (536)
T ss_dssp SSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECS-SCCHHHHHHHHH
T ss_pred cccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcC-CCCHHHHHHHHH
Confidence 4543 46888888766554433222 247888999999888653 33345678888899888765 467889999999
Q ss_pred cccceEEEECccchHHHHhhh----cCCCCccEEEEecCCCc
Q 005874 176 ETEVTTVICGSKELKKLVDLS----GQLDTVKHVICMDANIP 213 (672)
Q Consensus 176 ~~~~~~vi~~~~~~~~l~~~~----~~~~~l~~ii~~~~~~~ 213 (672)
+.+++.+++....+..+.+.. ..+++++.+++..+..+
T Consensus 269 ~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~ 310 (536)
T 3ni2_A 269 KYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLG 310 (536)
T ss_dssp HHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCC
T ss_pred HhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCC
Confidence 999999999988777665432 34567888887666543
No 60
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=64.24 E-value=39 Score=35.99 Aligned_cols=107 Identities=11% Similarity=0.058 Sum_probs=78.2
Q ss_pred EEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCH-HHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEE
Q 005874 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRA-EWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVI 183 (672)
Q Consensus 105 ~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~-e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 183 (672)
..+|.+.+...+......+...++.+++++..++|-+. --+...++++..|++++.+. ...++.+...+++.+++.++
T Consensus 208 V~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~ 286 (550)
T 3rix_A 208 VALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-RFEEELFLRSLQDYKIQSAL 286 (550)
T ss_dssp EEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCSEEE
T ss_pred hhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHcCCeEEE
Confidence 46888887766655544433357889999998888653 33445677888899888775 46788999999999999999
Q ss_pred ECccchHHHHhhh----cCCCCccEEEEecCCC
Q 005874 184 CGSKELKKLVDLS----GQLDTVKHVICMDANI 212 (672)
Q Consensus 184 ~~~~~~~~l~~~~----~~~~~l~~ii~~~~~~ 212 (672)
+....+..+.+.. ..+++++.+++..+..
T Consensus 287 ~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l 319 (550)
T 3rix_A 287 LVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPL 319 (550)
T ss_dssp ECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCC
T ss_pred eCcHHHHHHHhCccccccCcccccEEEEecCCC
Confidence 9998877665532 2356788887766543
No 61
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=63.45 E-value=74 Score=33.35 Aligned_cols=99 Identities=10% Similarity=0.054 Sum_probs=68.2
Q ss_pred EEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH--HHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEE
Q 005874 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEW--FVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTV 182 (672)
Q Consensus 105 ~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e~--~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 182 (672)
..+|.+.+...+..+.. ..++.+++++..++|-...+ ...+.+++..|..+++. ...++.+...+++.+++++
T Consensus 178 V~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~--~~~~~~~~~~i~~~~~t~~ 252 (509)
T 3ivr_A 178 ALISQGNLLIAQSSLVD---AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAA--KFDPAQAARDIEAHKVTVM 252 (509)
T ss_dssp EEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS--SCCHHHHHHHHHHHTCCEE
T ss_pred EEEehHHHHHHHHHHHH---hhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEec--ccCHHHHHHHHHHHCCcEE
Confidence 46888888777666554 34889999999998865332 23333455555555544 6788999999999999999
Q ss_pred EECccchHHHHhhh--cCCCCccEEEEe
Q 005874 183 ICGSKELKKLVDLS--GQLDTVKHVICM 208 (672)
Q Consensus 183 i~~~~~~~~l~~~~--~~~~~l~~ii~~ 208 (672)
+.....+..+.+.. ..++.++.++..
T Consensus 253 ~~~p~~~~~l~~~~~~~~l~~lr~~~~~ 280 (509)
T 3ivr_A 253 AEFAPMLGNILDQAAPAQLASLRAVTGL 280 (509)
T ss_dssp EEETTHHHHHHHHCCGGGGTTCCEEEEE
T ss_pred EecHHHHHHHHhcccccchhhhheeccc
Confidence 99888777665542 234556655543
No 62
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=62.63 E-value=71 Score=33.91 Aligned_cols=104 Identities=13% Similarity=-0.029 Sum_probs=77.0
Q ss_pred EEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH-HHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEE
Q 005874 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEW-FVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVI 183 (672)
Q Consensus 105 ~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e~-~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 183 (672)
..+|.+.+...+..++.. .++.+++++..++|-.... +..+++++..|++++.+. ...++.+...+++.+++.++
T Consensus 198 V~~sh~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~ 273 (549)
T 3g7s_A 198 VMLTHFNLAANALQLAVA---TGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG-MFNQEMLAENIEKYKGTFSW 273 (549)
T ss_dssp EEEEHHHHHHHHHHHHHH---HCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEES-SCCHHHHHHHHHHTTCCEEE
T ss_pred EEEcHHHHHHHHHHHHHH---cCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcC-CCCHHHHHHHHHHhCCeEEE
Confidence 468999888887776654 3788999999888865332 333667778898888765 56789999999999999999
Q ss_pred ECccchHHHHhhh------cCCCCccEEEEecCCC
Q 005874 184 CGSKELKKLVDLS------GQLDTVKHVICMDANI 212 (672)
Q Consensus 184 ~~~~~~~~l~~~~------~~~~~l~~ii~~~~~~ 212 (672)
+....+..+.+.. ..++.++.+++-.+..
T Consensus 274 ~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l 308 (549)
T 3g7s_A 274 AVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPV 308 (549)
T ss_dssp ECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCC
T ss_pred eCCHHHHHHHhhhhhhcccCCccceeEEEeCCccC
Confidence 9998877665542 2345677777765543
No 63
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=62.62 E-value=39 Score=37.09 Aligned_cols=110 Identities=10% Similarity=0.016 Sum_probs=73.6
Q ss_pred CCccE--EeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH-H-HHHHHHHhCCcEEEecCCC---CCHHHHHHH
Q 005874 101 LGEYE--WLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEW-F-VALQGCFRRNVTVVTIYAS---LGEEALCYS 173 (672)
Q Consensus 101 ~~~~~--~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e~-~-~~~lA~~~~G~~~vpl~~~---~~~~~l~~~ 173 (672)
+|..+ .+|.+.+...+.... -...++.++|++....+-+-.. . ..+++.+..|++.+..+.. ..++.+..+
T Consensus 274 TG~PKgV~~sh~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~ 351 (663)
T 1ry2_A 274 TGAPKGVQHSTAGYLLGALLTM--RYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDI 351 (663)
T ss_dssp SSSCEEEEECSHHHHHHHHHHH--HHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHH
T ss_pred CCCCceEEEchhHHHHHHHHHH--HHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHH
Confidence 55443 456666544332211 1235889999988877755322 2 4567889999998877642 467899999
Q ss_pred HhcccceEEEECccchHHHHhhhc------CCCCccEEEEecCCC
Q 005874 174 LNETEVTTVICGSKELKKLVDLSG------QLDTVKHVICMDANI 212 (672)
Q Consensus 174 l~~~~~~~vi~~~~~~~~l~~~~~------~~~~l~~ii~~~~~~ 212 (672)
+++.+++++++.+..+..+.+... .+++++.+++..+..
T Consensus 352 i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l 396 (663)
T 1ry2_A 352 IDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPI 396 (663)
T ss_dssp HHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCC
T ss_pred HHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCC
Confidence 999999999999887776654322 345677777765543
No 64
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=61.84 E-value=50 Score=35.44 Aligned_cols=106 Identities=4% Similarity=-0.055 Sum_probs=77.2
Q ss_pred cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH--HHHHHHHHhCCcEEEecCCCC---CHHHHHHHHhccc
Q 005874 104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEW--FVALQGCFRRNVTVVTIYASL---GEEALCYSLNETE 178 (672)
Q Consensus 104 ~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e~--~~~~lA~~~~G~~~vpl~~~~---~~~~l~~~l~~~~ 178 (672)
-..+|.+.+...+..+.. ..++.+++++..++|-...+ ...+++++..|++++...+.. .++.+...+++.+
T Consensus 184 gV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~ 260 (590)
T 3kxw_A 184 GVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYK 260 (590)
T ss_dssp EEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHT
T ss_pred EEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhC
Confidence 356899988887776654 34889999999999876443 334788889999988876542 5778889999999
Q ss_pred ceEEEECccchHHHHhhh-------cCCCCccEEEEecCCC
Q 005874 179 VTTVICGSKELKKLVDLS-------GQLDTVKHVICMDANI 212 (672)
Q Consensus 179 ~~~vi~~~~~~~~l~~~~-------~~~~~l~~ii~~~~~~ 212 (672)
++.+.+.......+.+.. ..+++++.+++..+..
T Consensus 261 ~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l 301 (590)
T 3kxw_A 261 ATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPV 301 (590)
T ss_dssp CSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCC
T ss_pred CeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCC
Confidence 999998877666554431 2346777777755543
No 65
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=59.43 E-value=47 Score=36.14 Aligned_cols=105 Identities=13% Similarity=0.070 Sum_probs=76.6
Q ss_pred EEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH-HHHHHHHHHhCCcEEEecC-CCCCHHHHHHHHhcccceEE
Q 005874 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAE-WFVALQGCFRRNVTVVTIY-ASLGEEALCYSLNETEVTTV 182 (672)
Q Consensus 105 ~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e-~~~~~lA~~~~G~~~vpl~-~~~~~~~l~~~l~~~~~~~v 182 (672)
..+|.+.+...+. .....++.+++++..+++-+.+ .+..+++++..|++++..+ ....++.+...+++.+++.+
T Consensus 182 V~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~ 257 (620)
T 4dg8_A 182 IACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSA 257 (620)
T ss_dssp EEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEE
T ss_pred EEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEE
Confidence 4678877654332 2233588999999999886633 3445788889999887764 35678999999999999999
Q ss_pred EECccchHHHHhhh-cCCCCccEEEEecCCCc
Q 005874 183 ICGSKELKKLVDLS-GQLDTVKHVICMDANIP 213 (672)
Q Consensus 183 i~~~~~~~~l~~~~-~~~~~l~~ii~~~~~~~ 213 (672)
+.....+..+.+.. ..+++++.+++-.+..+
T Consensus 258 ~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe~l~ 289 (620)
T 4dg8_A 258 WLTASLFNTLVDLDPDCLGGLRQLLTGGDILS 289 (620)
T ss_dssp EEEHHHHHHHHHHCGGGGTTCSEEEEESSCCC
T ss_pred EccHHHHHHHHhcChhhCCCccEEEEEeCcCC
Confidence 99988777665532 44677888888776544
No 66
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=58.28 E-value=41 Score=35.95 Aligned_cols=108 Identities=9% Similarity=-0.083 Sum_probs=78.0
Q ss_pred EEeeHHHHHHHHHHHHHHHH-----hcCCCCCCEEEEEcCCCHH-HHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhccc
Q 005874 105 EWLTYGQAFETICNFASGLA-----QLGHKKEERVAIFADTRAE-WFVALQGCFRRNVTVVTIYASLGEEALCYSLNETE 178 (672)
Q Consensus 105 ~~~Ty~el~~~a~~la~~L~-----~~g~~~g~~V~i~~~ns~e-~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~ 178 (672)
..+|.+.+...+..++..+. ...+...+++..+.+.... .+..++.++..|+..+........+.+...+++.+
T Consensus 193 V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~ 272 (562)
T 3ite_A 193 VRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELG 272 (562)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTT
T ss_pred EEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcC
Confidence 46899999888887777654 2356778888877776543 34446778889998887655444567788999999
Q ss_pred ceEEEECccchHHHHhhhcCCCCccEEEEecCCC
Q 005874 179 VTTVICGSKELKKLVDLSGQLDTVKHVICMDANI 212 (672)
Q Consensus 179 ~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~ 212 (672)
++.++.....+..+......+++++.+++..+..
T Consensus 273 ~t~~~~~P~~l~~~~~~~~~~~~lr~~~~gG~~l 306 (562)
T 3ite_A 273 VTHAGIVPSLLDQTGLVPEDAPHLVYLGVGGEKM 306 (562)
T ss_dssp CCEEEECHHHHHHHTCCGGGSTTCCEEEEESSCC
T ss_pred CCEEEcCHHHHhhcccCccccCceEEEEEecCCC
Confidence 9999999887665544445667888887766543
No 67
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=57.59 E-value=44 Score=35.80 Aligned_cols=105 Identities=12% Similarity=0.010 Sum_probs=76.7
Q ss_pred EEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCC-HHHHHHHHHHHhCCcEEEecCC-CCCHHHHHHHHhcccceEE
Q 005874 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTR-AEWFVALQGCFRRNVTVVTIYA-SLGEEALCYSLNETEVTTV 182 (672)
Q Consensus 105 ~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns-~e~~~~~lA~~~~G~~~vpl~~-~~~~~~l~~~l~~~~~~~v 182 (672)
..+|.+.+...+.. ....++.+++++..++|-+ .-....+++++..|++++.... ...+..+...+++.+++.+
T Consensus 232 V~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~ 307 (570)
T 4gr5_A 232 VMSPHRALTGTYLG----QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTML 307 (570)
T ss_dssp EEEEHHHHHHHHSS----CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEE
T ss_pred EEEecHHHHHHHHh----hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEE
Confidence 46888877433221 2234888999999998875 3345567888899998887754 4678899999999999999
Q ss_pred EECccchHHHHhh-hcCCCCccEEEEecCCCc
Q 005874 183 ICGSKELKKLVDL-SGQLDTVKHVICMDANIP 213 (672)
Q Consensus 183 i~~~~~~~~l~~~-~~~~~~l~~ii~~~~~~~ 213 (672)
......+..+.+. ...+++++.+++..+..+
T Consensus 308 ~~~P~~~~~l~~~~~~~~~~lr~~~~gG~~l~ 339 (570)
T 4gr5_A 308 QLSASLFNFLVDEVPEAFEGVRYAITGGEPAS 339 (570)
T ss_dssp EEEHHHHHHHHHHCGGGGTTCSEEEEESSCCC
T ss_pred EecHHHHHHHHhhchhhCCCceEEEEecccCC
Confidence 9998887766554 245677888887665543
No 68
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=55.12 E-value=46 Score=35.62 Aligned_cols=103 Identities=12% Similarity=0.097 Sum_probs=72.0
Q ss_pred EEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH-HHHHHHHHHhCCcEEEecCCC--CCHHHHHHHHhcccceE
Q 005874 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAE-WFVALQGCFRRNVTVVTIYAS--LGEEALCYSLNETEVTT 181 (672)
Q Consensus 105 ~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e-~~~~~lA~~~~G~~~vpl~~~--~~~~~l~~~l~~~~~~~ 181 (672)
..+|.+.+...+..++ ...++.++|++..+++-+.. .+..++.++..|++.+.+... ..+..+...+++.+++.
T Consensus 200 V~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~ 276 (563)
T 1amu_A 200 TMLEHKGISNLKVFFE---NSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITV 276 (563)
T ss_dssp EEEESHHHHHHHHHHH---HTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCE
T ss_pred EEEehHHHHHHHHHHH---HhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcE
Confidence 4678888765554433 34588999999988876533 334567788899988877543 46788999999999999
Q ss_pred EEECccchHHHHhhhcCCCCccEEEEecCCC
Q 005874 182 VICGSKELKKLVDLSGQLDTVKHVICMDANI 212 (672)
Q Consensus 182 vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~ 212 (672)
+.........+.. .....++.+++..+..
T Consensus 277 ~~~~P~~~~~l~~--~~~~~lr~~~~gG~~l 305 (563)
T 1amu_A 277 ITLPPTYVVHLDP--ERILSIQTLITAGSAT 305 (563)
T ss_dssp EEECHHHHTTSCT--TTCCSCSEEEEESSCC
T ss_pred EEeCHHHHHHHHh--cccccccEEEEEEecC
Confidence 9988765543322 2356777777765543
No 69
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=54.55 E-value=63 Score=34.68 Aligned_cols=88 Identities=13% Similarity=0.069 Sum_probs=65.3
Q ss_pred cCCCCCCEEEEEcCCCHH--HHHHHHHHHhCCcEEEecC-CCCCHHHHHHHHhcccceEEEECccchHHHHhhh---cCC
Q 005874 126 LGHKKEERVAIFADTRAE--WFVALQGCFRRNVTVVTIY-ASLGEEALCYSLNETEVTTVICGSKELKKLVDLS---GQL 199 (672)
Q Consensus 126 ~g~~~g~~V~i~~~ns~e--~~~~~lA~~~~G~~~vpl~-~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~---~~~ 199 (672)
.++.+++++....+.+.. ....+++.+..|++++..+ ....++.+...+++.+++.+++.+..+..+.... ..+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~l 340 (580)
T 3etc_A 261 QNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNF 340 (580)
T ss_dssp SCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---CC
T ss_pred hCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcccccCCC
Confidence 488899998888776533 2334678899999988775 5678899999999999999999988777665532 124
Q ss_pred CCccEEEEecCCCc
Q 005874 200 DTVKHVICMDANIP 213 (672)
Q Consensus 200 ~~l~~ii~~~~~~~ 213 (672)
+.++.+++..+..+
T Consensus 341 ~~lr~i~~gGe~l~ 354 (580)
T 3etc_A 341 STLKYAVVAGEPLN 354 (580)
T ss_dssp TTCCEEEECSSCCC
T ss_pred ccceEEEEccCCCC
Confidence 67787777665543
No 70
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=49.21 E-value=60 Score=32.07 Aligned_cols=67 Identities=6% Similarity=-0.079 Sum_probs=49.2
Q ss_pred HHHHhcC-CCCCCEEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECcc
Q 005874 121 SGLAQLG-HKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSK 187 (672)
Q Consensus 121 ~~L~~~g-~~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 187 (672)
....+.| +++|+.|.+....+=.-..+.++|...|..++.+-|...+..-...++..++++++++..
T Consensus 60 ~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 60 DKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 3344555 488888755566677777788888888998776666555556677889999999999864
No 71
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=46.84 E-value=1.1e+02 Score=32.01 Aligned_cols=85 Identities=12% Similarity=0.080 Sum_probs=64.2
Q ss_pred EEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCH--HHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEE
Q 005874 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRA--EWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTV 182 (672)
Q Consensus 105 ~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~--e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 182 (672)
..+|.+.+...+..+...+ ++.+++++...+|-.. .++..+++++..|++++... ...++.+...+ +.+++.+
T Consensus 173 V~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i-~~~~t~~ 247 (505)
T 3nyq_A 173 AVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG-RFSTEGAAREL-NDGATML 247 (505)
T ss_dssp EEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECS-SCCHHHHHHHH-TTTCCEE
T ss_pred EEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECC-CCChHHHHHHH-hhCCeEE
Confidence 4689998888877766554 7888999988887542 33445788889999988764 46677777777 6799999
Q ss_pred EECccchHHHHh
Q 005874 183 ICGSKELKKLVD 194 (672)
Q Consensus 183 i~~~~~~~~l~~ 194 (672)
+.....+..+.+
T Consensus 248 ~~~P~~~~~l~~ 259 (505)
T 3nyq_A 248 FGVPTMYHRIAE 259 (505)
T ss_dssp EECHHHHHHHHH
T ss_pred EehHHHHHHHHH
Confidence 999887766655
No 72
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=46.82 E-value=86 Score=23.26 Aligned_cols=61 Identities=8% Similarity=0.176 Sum_probs=40.8
Q ss_pred cHHHHHHHhcCcccceEEEEecCCCCeEEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEe
Q 005874 571 LGKVEAALIVSPYVDNIMMHADPFHSYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLL 637 (672)
Q Consensus 571 p~~iE~~l~~~~~V~~~~V~g~~~~~~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~ 637 (672)
..++++.+.+.|.|.+|..+..+ .++++-+.+++.+...+..... -..+|....-.-.++.
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~-~D~ll~v~~~d~~~l~~~i~~~-----l~~~~gV~~~~T~ivl 75 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGE-YDLIVKVETDTLKDLDQFITEK-----IRKMPEIQMTSTMIAI 75 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSS-CSEEEEEEESSHHHHHHHHHTT-----GGGCTTEEEEEEEEEE
T ss_pred HHHHHHHHhCCCCeeEEEEEccc-CCEEEEEEECCHHHHHHHHHHH-----hccCCCEeEEEEEEEE
Confidence 37899999999999999877654 4667777777777776655411 1456655544444433
No 73
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=46.50 E-value=71 Score=36.91 Aligned_cols=109 Identities=11% Similarity=0.028 Sum_probs=78.5
Q ss_pred cEEeeHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEcCCCH--HHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccce
Q 005874 104 YEWLTYGQAFETICNFASGLA-QLGHKKEERVAIFADTRA--EWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVT 180 (672)
Q Consensus 104 ~~~~Ty~el~~~a~~la~~L~-~~g~~~g~~V~i~~~ns~--e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~ 180 (672)
-..+|.+.+...+........ ..++.+++++..++|-.. .+...+++.+..|++.+..+ ...++.+...+++.+++
T Consensus 242 gV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t 320 (979)
T 3tsy_A 242 GVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMP-KFEINLLLELIQRCKVT 320 (979)
T ss_dssp BEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECS-SCCHHHHHHHHHHHTCC
T ss_pred EEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeC-CCCHHHHHHHHHHhCCe
Confidence 357899888776655433222 247888999998888653 33455678888899888765 46788999999999999
Q ss_pred EEEECccchHHHHhhh----cCCCCccEEEEecCCCc
Q 005874 181 TVICGSKELKKLVDLS----GQLDTVKHVICMDANIP 213 (672)
Q Consensus 181 ~vi~~~~~~~~l~~~~----~~~~~l~~ii~~~~~~~ 213 (672)
++...+..+..+.+.. ..++.++.+++-.+..+
T Consensus 321 ~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~ 357 (979)
T 3tsy_A 321 VAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLG 357 (979)
T ss_dssp EEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCC
T ss_pred EEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCC
Confidence 9999988776665432 23567888887666543
No 74
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=44.89 E-value=99 Score=32.86 Aligned_cols=107 Identities=7% Similarity=-0.057 Sum_probs=74.8
Q ss_pred cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH--HHHHHHHHHhCCcEEEecCCC---CCHHHHHHHHhccc
Q 005874 104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAE--WFVALQGCFRRNVTVVTIYAS---LGEEALCYSLNETE 178 (672)
Q Consensus 104 ~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e--~~~~~lA~~~~G~~~vpl~~~---~~~~~l~~~l~~~~ 178 (672)
-..+|.+.+...+..+... ..++.+++++..++|-... +...+++.+..|..++.+.+. ..+..+...+++.+
T Consensus 193 gV~~sh~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~ 270 (576)
T 3gqw_A 193 GVIITHREVMANLRAISHD--GIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNR 270 (576)
T ss_dssp CEEEEHHHHHHHHHHHHHT--TSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTT
T ss_pred eEEeeHHHHHHHHHHhhhc--ccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhC
Confidence 3578998887666554321 2588999999998886643 444567788889888776542 45678899999999
Q ss_pred ceEEEECccchHHHHhhh-------cCCCCccEEEEecCCC
Q 005874 179 VTTVICGSKELKKLVDLS-------GQLDTVKHVICMDANI 212 (672)
Q Consensus 179 ~~~vi~~~~~~~~l~~~~-------~~~~~l~~ii~~~~~~ 212 (672)
++.+++.......+.... ..++.++.+++..+..
T Consensus 271 ~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l 311 (576)
T 3gqw_A 271 GTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPI 311 (576)
T ss_dssp CCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCC
T ss_pred CeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccC
Confidence 999999887665543321 2356677777755543
No 75
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=42.31 E-value=65 Score=33.99 Aligned_cols=104 Identities=11% Similarity=-0.048 Sum_probs=70.7
Q ss_pred EEeeHHHH-HHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH--HHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceE
Q 005874 105 EWLTYGQA-FETICNFASGLAQLGHKKEERVAIFADTRAEW--FVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTT 181 (672)
Q Consensus 105 ~~~Ty~el-~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e~--~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 181 (672)
..+|.+.+ ...+... ....++.+++++...+|-...+ ...+++.+..|++.+.+.+...++.+...+++.+++.
T Consensus 201 v~~sh~~l~~~~~~~~---~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~ 277 (529)
T 2v7b_A 201 TVHTHANLYWTAELYA---KPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTV 277 (529)
T ss_dssp EEEEHHHHHHHHHHTC---CCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSE
T ss_pred EEEEhhHHHHHHHHHh---hhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEE
Confidence 46788876 3222111 1124788999999888876443 3345678889999988877778999999999999999
Q ss_pred EEECccchHHHHhhhcC----CCCccEEEEecCC
Q 005874 182 VICGSKELKKLVDLSGQ----LDTVKHVICMDAN 211 (672)
Q Consensus 182 vi~~~~~~~~l~~~~~~----~~~l~~ii~~~~~ 211 (672)
++.....+..+...... ...++.+++..+.
T Consensus 278 ~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~ 311 (529)
T 2v7b_A 278 FYGVPTLYANMLVSPNLPARADVAIRICTSAGEA 311 (529)
T ss_dssp EEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSC
T ss_pred EEecHHHHHHHHhCcccccccCCceEEEEEcCCC
Confidence 99998877666543211 1246666654443
No 76
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=37.04 E-value=1.2e+02 Score=31.23 Aligned_cols=105 Identities=5% Similarity=-0.059 Sum_probs=72.9
Q ss_pred cEEeeHHHHHHHHHHHHHHHHhcCCCC------CCEEEEEcCCCH--HHHHHHHHHHhCCcEEEecCCC---CCHHHHHH
Q 005874 104 YEWLTYGQAFETICNFASGLAQLGHKK------EERVAIFADTRA--EWFVALQGCFRRNVTVVTIYAS---LGEEALCY 172 (672)
Q Consensus 104 ~~~~Ty~el~~~a~~la~~L~~~g~~~------g~~V~i~~~ns~--e~~~~~lA~~~~G~~~vpl~~~---~~~~~l~~ 172 (672)
-..+|.+.+...+..+...+ ++.+ ++++..++|-.- .++..+++++..|++.+...+. ..++.+..
T Consensus 200 gV~~th~~l~~~~~~~~~~~---~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~ 276 (480)
T 3t5a_A 200 GVVMSHQNVRVNFEQLMSGY---FADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMH 276 (480)
T ss_dssp CEEEEHHHHHHHHHHHHHHH---CTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHH
T ss_pred EEEEeHHHHHHHHHHHHHHh---ccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHH
Confidence 35789999988877766655 3444 888888888663 4455678899999998887654 36788999
Q ss_pred HHhcccceEEEECccchHHHHhh--------hcCCCCccEEEEecCCC
Q 005874 173 SLNETEVTTVICGSKELKKLVDL--------SGQLDTVKHVICMDANI 212 (672)
Q Consensus 173 ~l~~~~~~~vi~~~~~~~~l~~~--------~~~~~~l~~ii~~~~~~ 212 (672)
.+++.+++ ++........+... ...+++++.+++-.+..
T Consensus 277 ~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l 323 (480)
T 3t5a_A 277 LMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERV 323 (480)
T ss_dssp HTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTC
T ss_pred HHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcC
Confidence 99999999 55555444333321 12356788877765543
No 77
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=36.66 E-value=2.7e+02 Score=28.93 Aligned_cols=107 Identities=5% Similarity=-0.065 Sum_probs=74.5
Q ss_pred cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH-HHHHHHHHHhCCcEEEecCCC--CCHHHHHHHHhcccce
Q 005874 104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAE-WFVALQGCFRRNVTVVTIYAS--LGEEALCYSLNETEVT 180 (672)
Q Consensus 104 ~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e-~~~~~lA~~~~G~~~vpl~~~--~~~~~l~~~l~~~~~~ 180 (672)
...+|.+.+...+..+.... ..++.+++++....+-+.. .+..+++++..|++.+.+... ..++.+...+.+.+++
T Consensus 162 gV~~sh~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t 240 (521)
T 3l8c_A 162 GVQISHDNLLSFTNWMIEDA-AFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVG 240 (521)
T ss_dssp EEEEEHHHHHHHHHHHHHCT-TTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCS
T ss_pred EEEEehHHHHHHHHHHhhcc-ccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCc
Confidence 35689988876655443221 2477888888888776533 345567788899988877654 3678899999999999
Q ss_pred EEEECccchHHHHhhh----cCCCCccEEEEecCC
Q 005874 181 TVICGSKELKKLVDLS----GQLDTVKHVICMDAN 211 (672)
Q Consensus 181 ~vi~~~~~~~~l~~~~----~~~~~l~~ii~~~~~ 211 (672)
.+.........+.... ..++.++.+++..+.
T Consensus 241 ~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~ 275 (521)
T 3l8c_A 241 IWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEE 275 (521)
T ss_dssp EEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSC
T ss_pred EEEeCCCHHHHHhhhhccccccCccceEEEEeccc
Confidence 9999988776554432 235667777765544
No 78
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=36.53 E-value=1.3e+02 Score=29.73 Aligned_cols=65 Identities=5% Similarity=-0.088 Sum_probs=50.9
Q ss_pred HHhcC-CCCCCEEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECcc
Q 005874 123 LAQLG-HKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSK 187 (672)
Q Consensus 123 L~~~g-~~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 187 (672)
+.+.| +++|.+..+....+=.-+.+.++|.+.|+.++.+-|...+..-...++..++++++++..
T Consensus 77 a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 77 AEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 33444 677877777777888888888999999998777766666666778899999999999754
No 79
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=32.39 E-value=2.1e+02 Score=29.71 Aligned_cols=102 Identities=8% Similarity=0.010 Sum_probs=71.0
Q ss_pred cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH--HHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceE
Q 005874 104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAE--WFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTT 181 (672)
Q Consensus 104 ~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e--~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 181 (672)
-..+|.+.+...+..+... .++.+++++...+|-... +....++++..|.+.+.+. ...++.+...++ ++++
T Consensus 172 gV~~sh~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~i~--~~t~ 245 (503)
T 4fuq_A 172 GAMLSHDNLASNSLTLVDY---WRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLP-KFDPDKILDLMA--RATV 245 (503)
T ss_dssp EEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECS-SCCHHHHHHHHT--TCCE
T ss_pred EEEEeHHHHHHHHHHHHHH---hCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcC-CCCHHHHHHHHh--hcCE
Confidence 3568998888777665544 478999999988885422 2344667777888887765 567888888887 7889
Q ss_pred EEECccchHHHHhhhc----CCCCccEEEEecCC
Q 005874 182 VICGSKELKKLVDLSG----QLDTVKHVICMDAN 211 (672)
Q Consensus 182 vi~~~~~~~~l~~~~~----~~~~l~~ii~~~~~ 211 (672)
++.....+..+.+... .++.++.+++..+.
T Consensus 246 ~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~ 279 (503)
T 4fuq_A 246 LMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAP 279 (503)
T ss_dssp EEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSC
T ss_pred EEEHHHHHHHHHhCCCccccchhhcEEEEECCCC
Confidence 9888877766655321 24567777665544
No 80
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=31.32 E-value=1.2e+02 Score=36.26 Aligned_cols=123 Identities=7% Similarity=0.050 Sum_probs=84.9
Q ss_pred cCCCCceEEeeccccccccccCCcccccccCCcc--EEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH-HHH
Q 005874 71 HGDKYLLGTRQLISRETEVADNGRSFEKLHLGEY--EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEW-FVA 147 (672)
Q Consensus 71 ~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e~-~~~ 147 (672)
.|+.+|++... .|. +|.. ..+|.+.+... .......++.+++++..+.+-+.+. +.-
T Consensus 605 ~~~~~ayiiyT----------SGS------TG~PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~ 664 (1304)
T 2vsq_A 605 DPNDPAYIMYT----------SGT------TGKPKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFD 664 (1304)
T ss_dssp CTTSEEEEEEE----------CCS------SSSCEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHH
T ss_pred CCCCeEEEEeC----------CCC------CCCCCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHH
Confidence 46777766532 454 4533 46788776532 1222334888999999888876543 445
Q ss_pred HHHHHhCCcEEEecCC--CCCHHHHHHHHhcccceEEEECccchHHHHhhh-cCCCCccEEEEecCCCc
Q 005874 148 LQGCFRRNVTVVTIYA--SLGEEALCYSLNETEVTTVICGSKELKKLVDLS-GQLDTVKHVICMDANIP 213 (672)
Q Consensus 148 ~lA~~~~G~~~vpl~~--~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~-~~~~~l~~ii~~~~~~~ 213 (672)
+++.+..|++++..++ ...++.+...+++.++++++.....+..+.+.. ..++.++.+++..+..+
T Consensus 665 ~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe~l~ 733 (1304)
T 2vsq_A 665 FYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGERAS 733 (1304)
T ss_dssp HHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHHHHTCSEEEEESSCCC
T ss_pred HHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhcCCCccEEEEecCCCC
Confidence 7788889998887765 367889999999999999999988777665432 22456888888776544
No 81
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=29.12 E-value=2e+02 Score=27.97 Aligned_cols=65 Identities=12% Similarity=-0.022 Sum_probs=45.3
Q ss_pred HHhcC-CCCCCEEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECcc
Q 005874 123 LAQLG-HKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSK 187 (672)
Q Consensus 123 L~~~g-~~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 187 (672)
+.+.| +++|....+....+=.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 57 a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 57 AEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 34555 456654444456666777777888899997776655544556667888999999999864
No 82
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=28.13 E-value=2e+02 Score=29.43 Aligned_cols=64 Identities=9% Similarity=-0.064 Sum_probs=47.6
Q ss_pred HHhcC-CCCCCEEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECc
Q 005874 123 LAQLG-HKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGS 186 (672)
Q Consensus 123 L~~~g-~~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~ 186 (672)
..+.| +++|....+....+=.-..+.++|.+.|..++.+-|...+..-...++..++++++++.
T Consensus 165 A~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 165 AEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 34556 46776555566667777778888999999877666655556667788999999999975
No 83
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=27.78 E-value=1.5e+02 Score=21.62 Aligned_cols=42 Identities=12% Similarity=0.078 Sum_probs=31.1
Q ss_pred HHHHHHHhcCcccceEEEEecCCCCeEEEEEEcChhHHHHHHH
Q 005874 572 GKVEAALIVSPYVDNIMMHADPFHSYCVALVVASQPAVEEWAA 614 (672)
Q Consensus 572 ~~iE~~l~~~~~V~~~~V~g~~~~~~~va~v~~~~~~~~~~~~ 614 (672)
.++++.+.++|.|.+|..+..+ .++++-+.+++.+...+...
T Consensus 16 ~~~~~~l~~~peV~~~~~vtG~-~d~l~~v~~~d~~~l~~~~~ 57 (83)
T 2zbc_A 16 DEVFERLKSMSEVTEVHVVYGV-YDIVVKVEADSMDKLKDFVT 57 (83)
T ss_dssp HHHHHHHTTCTTEEEEEECSSS-CSEEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHhCCCCeEEEEEEecc-CCEEEEEEECCHHHHHHHHH
Confidence 7889999999999999877654 45566666666666665543
No 84
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=27.47 E-value=2.4e+02 Score=27.49 Aligned_cols=77 Identities=12% Similarity=0.043 Sum_probs=52.1
Q ss_pred eeHHHHHHHHHHH--H-HHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEE
Q 005874 107 LTYGQAFETICNF--A-SGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVI 183 (672)
Q Consensus 107 ~Ty~el~~~a~~l--a-~~L~~~g~~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 183 (672)
+++.+........ | ..+...++++|++|+|...-+.-.+.+++|....|+.++.++.+ ++. ....++.+++.++
T Consensus 137 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r-~~~~~~~Ga~~~i 213 (348)
T 4eez_A 137 LDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDK-LNLAKKIGADVTI 213 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHH-HHHHHHTTCSEEE
T ss_pred CCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHH-hhhhhhcCCeEEE
Confidence 4666543332222 2 23445599999999999987788888888887778887777654 333 4566778888887
Q ss_pred ECc
Q 005874 184 CGS 186 (672)
Q Consensus 184 ~~~ 186 (672)
...
T Consensus 214 ~~~ 216 (348)
T 4eez_A 214 NSG 216 (348)
T ss_dssp EC-
T ss_pred eCC
Confidence 654
No 85
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=27.30 E-value=2.3e+02 Score=27.30 Aligned_cols=66 Identities=11% Similarity=0.016 Sum_probs=44.8
Q ss_pred HHHHhcCC-CCCCEEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECcc
Q 005874 121 SGLAQLGH-KKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSK 187 (672)
Q Consensus 121 ~~L~~~g~-~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 187 (672)
..+.+.|. ++|+.|.. ...+=.-..+.++|...|..++.+-|...+..-...++..++++++++..
T Consensus 56 ~~a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 56 QAAEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp HHHHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 33444554 56666554 55555666667778899998776655544455666788999999999863
No 86
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=24.42 E-value=4.2e+02 Score=26.05 Aligned_cols=52 Identities=12% Similarity=-0.005 Sum_probs=30.7
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHhCCcEEEecCC----------CCCHHHHHHHHhcccceEEE
Q 005874 128 HKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYA----------SLGEEALCYSLNETEVTTVI 183 (672)
Q Consensus 128 ~~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~----------~~~~~~l~~~l~~~~~~~vi 183 (672)
+++|+.|.+..+....+. -++...|+.+++++. ....+.+...++. +.++++
T Consensus 123 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~ 184 (407)
T 3nra_A 123 VARGDKVAIVQPDYFANR---KLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA-GARVFL 184 (407)
T ss_dssp CCTTCEEEEEESCCTHHH---HHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT-TCCEEE
T ss_pred CCCCCEEEEcCCcccchH---HHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh-CCcEEE
Confidence 457788887776655433 445556766554433 1356777777765 555544
No 87
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=24.17 E-value=2.3e+02 Score=27.81 Aligned_cols=64 Identities=9% Similarity=-0.080 Sum_probs=43.3
Q ss_pred HHhcCC-CCCCEEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECcc
Q 005874 123 LAQLGH-KKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSK 187 (672)
Q Consensus 123 L~~~g~-~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 187 (672)
+.+.|. ++|+.|.... .+=.-..+.++|...|..++.+-|...+..-...++..++++++++..
T Consensus 69 a~~~g~~~~g~~vv~aS-sGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 69 AIKDGRLKPGMEIIEST-SGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGK 133 (343)
T ss_dssp HHHHTSSCTTCEEEEEC-SSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 334453 6676665554 355555666777889987776655544555667888899999999864
No 88
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=23.89 E-value=2.1e+02 Score=28.02 Aligned_cols=60 Identities=12% Similarity=0.063 Sum_probs=34.7
Q ss_pred CCCCCCEEEEEcCCCH------HHHHHHHH-HHhCCcEEEecCCCC------------CHHHHHHHHhcccceEEEECc
Q 005874 127 GHKKEERVAIFADTRA------EWFVALQG-CFRRNVTVVTIYASL------------GEEALCYSLNETEVTTVICGS 186 (672)
Q Consensus 127 g~~~g~~V~i~~~ns~------e~~~~~lA-~~~~G~~~vpl~~~~------------~~~~l~~~l~~~~~~~vi~~~ 186 (672)
-+++||+|+|++|.+. +-+-...+ +-..|..++.-.... ..+++..++.+-++++|+|..
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 5789999999999862 22222222 234577766542211 123555566666666666654
No 89
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=23.84 E-value=2.4e+02 Score=27.02 Aligned_cols=65 Identities=8% Similarity=-0.030 Sum_probs=42.9
Q ss_pred HHHhcCC-CCCCEEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECcc
Q 005874 122 GLAQLGH-KKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSK 187 (672)
Q Consensus 122 ~L~~~g~-~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 187 (672)
.+.+.|. ++|+.|.. ...+=.-..+.++|...|..++.+-|...+..-...++..++++++++..
T Consensus 55 ~a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 55 AAEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 3444554 56665544 44455555666778889997776655444455566778999999999864
No 90
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=23.68 E-value=1.9e+02 Score=28.78 Aligned_cols=60 Identities=13% Similarity=-0.009 Sum_probs=39.9
Q ss_pred HHhcCCCCCCEEEEEcCCCHHHHHHHHHHHhCCcEEEecCC-----CCCHHHHHHHHhccc--ceEEEEC
Q 005874 123 LAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYA-----SLGEEALCYSLNETE--VTTVICG 185 (672)
Q Consensus 123 L~~~g~~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~-----~~~~~~l~~~l~~~~--~~~vi~~ 185 (672)
|...++++||.|.+-.+..... ..++...|+.++.++. ...++.+...+...+ .++|+..
T Consensus 70 l~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 70 IQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 4445788999998887765543 3456678987766543 247788888774334 6666643
No 91
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=22.98 E-value=1.2e+02 Score=29.82 Aligned_cols=60 Identities=8% Similarity=0.185 Sum_probs=36.8
Q ss_pred CCCCCCEEEEEcCCCH------HHHHHHHHHH-hCCcEEEecCCC------------CCHHHHHHHHhcccceEEEECc
Q 005874 127 GHKKEERVAIFADTRA------EWFVALQGCF-RRNVTVVTIYAS------------LGEEALCYSLNETEVTTVICGS 186 (672)
Q Consensus 127 g~~~g~~V~i~~~ns~------e~~~~~lA~~-~~G~~~vpl~~~------------~~~~~l~~~l~~~~~~~vi~~~ 186 (672)
-+++||+|+|++|.+. +-+-...+.+ ..|..++.-... ...+++..++.+-++++|+|..
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 5789999999999883 2232333333 468887753211 1123556666667777777764
No 92
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=22.35 E-value=3.4e+02 Score=25.94 Aligned_cols=65 Identities=8% Similarity=-0.028 Sum_probs=43.4
Q ss_pred HHHhcC-CCCCC--EEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECcc
Q 005874 122 GLAQLG-HKKEE--RVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSK 187 (672)
Q Consensus 122 ~L~~~g-~~~g~--~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 187 (672)
.+.+.| +++|+ .|.. ...+=.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 50 ~a~~~g~~~~g~~~~vv~-assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 50 DAEERGILRPGSGQVIVE-PTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp HHHHTTSCCTTSCCEEEE-SCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred HHHHcCCCCCCCccEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 334445 46666 4333 44555556666778899997776655544556667888899999999865
No 93
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=20.68 E-value=1.4e+02 Score=29.91 Aligned_cols=60 Identities=8% Similarity=0.129 Sum_probs=37.7
Q ss_pred CCCCCCEEEEEcCCCH------HHHHHHHHHH-hCCcEEEecCCCC------------CHHHHHHHHhcccceEEEECc
Q 005874 127 GHKKEERVAIFADTRA------EWFVALQGCF-RRNVTVVTIYASL------------GEEALCYSLNETEVTTVICGS 186 (672)
Q Consensus 127 g~~~g~~V~i~~~ns~------e~~~~~lA~~-~~G~~~vpl~~~~------------~~~~l~~~l~~~~~~~vi~~~ 186 (672)
-+++||+|+|++|.+. +-+-...+.+ ..|..++.-.... ..+.|..++.+-++++|+|..
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 6899999999999873 2222223333 4688877543211 223566666677778888754
No 94
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=20.36 E-value=3.3e+02 Score=26.41 Aligned_cols=64 Identities=3% Similarity=-0.072 Sum_probs=45.2
Q ss_pred HHhcC-CCCCCEEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECcc
Q 005874 123 LAQLG-HKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSK 187 (672)
Q Consensus 123 L~~~g-~~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 187 (672)
..+.| +++++.|... ..+=.-..+.++|.+.|+.++.+-|...+..-...++..+++++++...
T Consensus 64 a~~~g~l~~~~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 128 (325)
T 3dwg_A 64 AEADGLLRPGATILEP-TSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAE 128 (325)
T ss_dssp HHHTTCCCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECST
T ss_pred HHHcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 34445 4667776554 4566667777788888998776666555556677889999999999863
Done!