BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005877
(672 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XM6|A Chain A, Crystal Structure Of The Protein Corresponding To Locus
C5321 From Cft073 E.Coli Strain
Length = 490
Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 102/342 (29%), Positives = 179/342 (52%), Gaps = 22/342 (6%)
Query: 237 AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVE 296
A++G A Y +GL Y G G+ +D +A++W+ KAA KG PQ+ + LG +Y G GV+
Sbjct: 70 AEQGYTPAEYVLGLRYMNG-EGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVK 128
Query: 297 RNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHY 356
+ ++++W AA Q S +G Y +G GV ++Y A+E++ KAA+
Sbjct: 129 VDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGV-TRDYVMAREWYSKAAEQGNVWSCN 187
Query: 357 NLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYK 416
LG MY +G+GV+R+ ++ +++ +A +G + LA M++ G+G+ ++ + L+
Sbjct: 188 QLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFS 247
Query: 417 LVAERGPWSSLSRWALESYL-KGDVG-----KAFLLYSRMAELGYEVAQSNAAWILDKYG 470
AE+G +S++++ L L +G G KA Y + AE G Q A + DK
Sbjct: 248 QSAEQG--NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGA 305
Query: 471 EGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEA 530
EG A+ + A S + +++EQG+ A +G A Y+ G++ ++++A E
Sbjct: 306 EGV-----------AKNREQAISWYTKSAEQGDATAQANLG-AIYFRLGSEEEHKKAVEW 353
Query: 531 YMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALE 572
+ A ++ A FNLG G+G+ D A + +A E
Sbjct: 354 FRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/324 (29%), Positives = 150/324 (46%), Gaps = 40/324 (12%)
Query: 237 AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVE 296
A KG A +G+ Y+ G G++ D+ +++ WF AA++G + +G+ Y G GV
Sbjct: 106 ALKGLPQAQQNLGVMYHEG-NGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVT 164
Query: 297 RNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHY 356
R+Y A EW + AA Q + N +GY+Y +G GVE+ + A+ Y + A +E G
Sbjct: 165 RDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDEL-GQL 223
Query: 357 NLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYK 416
+L MYY GIGV +D + F +A G+ A ++L + G+ K A Y+
Sbjct: 224 HLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYR 283
Query: 417 LVAERGPWSSLSRWALESYLKGDVG------KAFLLYSRMAELGYEVAQSNAAWILDKYG 470
AE+G S + Y KG G +A Y++ AE G AQ+N I + G
Sbjct: 284 KSAEQGN-SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLG 342
Query: 471 E--------------------------GSMCMGESGFCTDAERHQCAHSLWW-QASEQGN 503
G+ + G D ++ ++W +A+EQG
Sbjct: 343 SEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQ----AAIWMRKAAEQGL 398
Query: 504 EHAALLIGDAYYYGRGTQRDYERA 527
A + +G+ YYYG G +RDY +A
Sbjct: 399 SAAQVQLGEIYYYGLGVERDYVQA 422
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 86/327 (26%), Positives = 147/327 (44%), Gaps = 30/327 (9%)
Query: 116 ESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDM 175
+ AA++G P A+ LG +Y G + +K ++ + AAE G + ++ Y D
Sbjct: 103 KKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDG 162
Query: 176 HDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGA----LRKSRGEDDEAFQ 231
+ + E A + + + G E N RKS DE Q
Sbjct: 163 VTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQ 222
Query: 232 ----------------------ILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMW 269
+ A++GN+ A +++G GL G ++ KAL W
Sbjct: 223 LHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGA-KEPLKALEW 281
Query: 270 FSKAADKGEPQSMEFLGEIYARGA-GVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKG 328
+ K+A++G +L +Y +GA GV +N +A+ W T +A Q +A +G +Y +
Sbjct: 282 YRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFR- 340
Query: 329 YGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQ 388
G E++ + KA E+F KAA E +NLG +G GVK+D + A + AA G
Sbjct: 341 LGSEEE-HKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLS 399
Query: 389 KAFYQLAKMFHTGVGLKKNLHMATALY 415
A QL ++++ G+G++++ A A +
Sbjct: 400 AAQVQLGEIYYYGLGVERDYVQAWAWF 426
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 137/275 (49%), Gaps = 28/275 (10%)
Query: 118 AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTY-----LR 172
AA +G+ + + LG++Y G+ ERN + ++ +A G+ ++ +A Y +
Sbjct: 177 AAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVT 236
Query: 173 QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGAL---RKSRGEDDEA 229
QD V L+++ AE NS + ++E + GA+E AL RKS
Sbjct: 237 QDYTQSRV-LFSQSAEQG-NSIAQFRLGYILE--QGLAGAKEPLKALEWYRKS------- 285
Query: 230 FQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIY 289
A++GN+ Y + Y G G+ ++R +A+ W++K+A++G+ + LG IY
Sbjct: 286 -------AEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIY 338
Query: 290 ARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN 349
R G E + KA+EW AA + +A +G ++G GV KK+ +A + KAA+
Sbjct: 339 FR-LGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGV-KKDEQQAAIWMRKAAEQ 396
Query: 350 EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN 384
+ LG +YY G+GV+RD A +F A+
Sbjct: 397 GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAST 431
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 105/226 (46%), Gaps = 29/226 (12%)
Query: 118 AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHD 177
+A +G+ A+ LG++ G+ + KA ++ +AE GN + +A+ Y D
Sbjct: 249 SAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLY------D 302
Query: 178 KAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEY-- 235
K + A+ E A++ + S + A+ N GA+ G ++E + +E+
Sbjct: 303 KGAEGVAKNREQAISWYTKSAEQG-------DATAQANLGAIYFRLGSEEEHKKAVEWFR 355
Query: 236 -QAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAG 294
A KG A + +G G +G+++D +A +W KAA++G + LGEIY G G
Sbjct: 356 KAAAKGEKAAQFNLGNALLQG-KGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLG 414
Query: 295 VERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAK 340
VER+Y +A W A+ + +G E +N T+ K
Sbjct: 415 VERDYVQAWAWFDTASTNDM------------NLFGTENRNITEKK 448
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 497 QASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGL 556
+A+EQG A ++G Y G G +DY +A Y A + QA NLG M+ G G+
Sbjct: 68 RAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGV 127
Query: 557 PLDLHLAKRYYDQALE 572
+D + +++ A E
Sbjct: 128 KVDKAESVKWFRLAAE 143
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%)
Query: 497 QASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGL 556
Q +E G A L +G Y+ G T +D +A + + A Q A + LG + +G+G+
Sbjct: 32 QKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGV 91
Query: 557 PLDLHLAKRYYDQA 570
P D A +Y +A
Sbjct: 92 PQDYAQAVIWYKKA 105
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 38/199 (19%), Positives = 77/199 (38%), Gaps = 50/199 (25%)
Query: 76 FEPSIDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYG 135
+ S + G +G YY+ + + G + E+A S +A +GD A++ LG +Y
Sbjct: 282 YRKSAEQGNSDGQYYL--AHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIY- 338
Query: 136 MGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFL 195
+ ++ H KAV+ + + A +
Sbjct: 339 --------------------------------FRLGSEEEHKKAVEWFRKAAAKGEKAAQ 366
Query: 196 ISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFG 255
+ + +++ + ++ +RK+ A++G + A ++G YY+G
Sbjct: 367 FNLGNALLQGKGVKKDEQQAAIWMRKA--------------AEQGLSAAQVQLGEIYYYG 412
Query: 256 LRGLRRDRTKALMWFSKAA 274
L G+ RD +A WF A+
Sbjct: 413 L-GVERDYVQAWAWFDTAS 430
>pdb|1OUV|A Chain A, Helicobacter Cysteine Rich Protein C (Hcpc)
Length = 273
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 113/243 (46%), Gaps = 44/243 (18%)
Query: 332 EKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAF 391
++K++T+AK+YFEKA D +E G +NLGV+YY+G GV++++K A ++ A + +
Sbjct: 18 KEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGC 77
Query: 392 YQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMA 451
+ L ++++G G+ +N + KA YS+
Sbjct: 78 HLLGNLYYSGQGVSQNTN--------------------------------KALQYYSKAC 105
Query: 452 ELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIG 511
+L Y ++ I Y +G + D ++ A + +A + + ++G
Sbjct: 106 DLKYAEGCASLGGI---YHDGKVVT------RDFKK---AVEYFTKACDLNDGDGCTILG 153
Query: 512 DAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQAL 571
Y GRGT +D ++A +Y A ++ FN G M+ HG+G + A Y +A
Sbjct: 154 SLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKAC 213
Query: 572 EVD 574
E++
Sbjct: 214 ELE 216
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 86/182 (47%), Gaps = 3/182 (1%)
Query: 239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERN 298
K N+G + +G+ YY G +G+ ++ KA +++KA D LG +Y G GV +N
Sbjct: 36 KENSGC-FNLGVLYYQG-QGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQN 93
Query: 299 YTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNL 358
KAL++ + A + +G +Y G V +++ KA EYF KA D + G L
Sbjct: 94 TNKALQYYSKACDLKYAEGCASLGGIYHDGK-VVTRDFKKAVEYFTKACDLNDGDGCTIL 152
Query: 359 GVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLV 418
G +Y G G +D+K A + A + + M+H G G KN A A Y
Sbjct: 153 GSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKA 212
Query: 419 AE 420
E
Sbjct: 213 CE 214
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 76/155 (49%), Gaps = 1/155 (0%)
Query: 261 RDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNG 320
+D T+A +F KA D E LG +Y +G GVE+N KA + A + +
Sbjct: 20 KDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHL 79
Query: 321 IGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFL 380
+G LY G GV +N KA +Y+ KA D + A G +LG +Y+ G V RD K A +YF
Sbjct: 80 LGNLYYSGQGVS-QNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFT 138
Query: 381 VAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALY 415
A + L ++ G G K+L A A Y
Sbjct: 139 KACDLNDGDGCTILGSLYDAGRGTPKDLKKALASY 173
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 2/169 (1%)
Query: 248 IGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLT 307
+G YY G +G+ ++ KAL ++SKA D + LG IY G V R++ KA+E+ T
Sbjct: 80 LGNLYYSG-QGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFT 138
Query: 308 HAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIG 367
A +G LY G G K + KA ++KA D +++ G +N G MY+ G G
Sbjct: 139 KACDLNDGDGCTILGSLYDAGRGTPK-DLKKALASYDKACDLKDSPGCFNAGNMYHHGEG 197
Query: 368 VKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYK 416
++ K A + A + + L M + G G+ +N A +K
Sbjct: 198 ATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFK 246
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 109/262 (41%), Gaps = 45/262 (17%)
Query: 296 ERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGH 355
E+++T+A ++ A + S +G LY +G GVE KN KA ++ KA D + G
Sbjct: 19 EKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVE-KNLKKAASFYAKACDLNYSNGC 77
Query: 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALY 415
+ LG +YY G GV ++ A +Y+ A + + + L ++H G
Sbjct: 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDG-------------- 123
Query: 416 KLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMC 475
K+V D KA +++ +L + IL GS+
Sbjct: 124 KVVTR------------------DFKKAVEYFTKACDLN----DGDGCTIL-----GSLY 156
Query: 476 MGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHAR 535
G D ++ A + + +A + + G+ Y++G G ++++ A Y A
Sbjct: 157 DAGRGTPKDLKK---ALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKAC 213
Query: 536 SQSNAQAMFNLGYMHEHGQGLP 557
N FNLG M +G+G+
Sbjct: 214 ELENGGGCFNLGAMQYNGEGVT 235
>pdb|1KLX|A Chain A, Helicobacter Pylori Cysteine Rich Protein B (Hcpb)
Length = 138
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Query: 259 LRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAY 318
+++D KA+ ++ KA + E + + + + N K ++L+ A +
Sbjct: 7 VKKDLKKAIQYYVKACELNE------MFGCLSLVSNSQINKQKLFQYLSKACELNSGNGC 60
Query: 319 NGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKY 378
+G Y G V KK+ KA +Y+ KA + G LG Y G GV ++ K A K
Sbjct: 61 RFLGDFYENGKYV-KKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKT 119
Query: 379 FLVAANAGHQKA 390
F A G + A
Sbjct: 120 FEKACRLGSEDA 131
Score = 32.7 bits (73), Expect = 0.65, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 35/88 (39%)
Query: 335 NYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQL 394
N K +Y KA + G LG Y G VK+D++ A +Y+ A Q L
Sbjct: 40 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLIL 99
Query: 395 AKMFHTGVGLKKNLHMATALYKLVAERG 422
+ G G+ KN A ++ G
Sbjct: 100 GYKQYAGKGVVKNEKQAVKTFEKACRLG 127
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 36/74 (48%)
Query: 497 QASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGL 556
+A E + + +GD Y G+ ++D +AA+ Y A ++ LGY G+G+
Sbjct: 50 KACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGV 109
Query: 557 PLDLHLAKRYYDQA 570
+ A + +++A
Sbjct: 110 VKNEKQAVKTFEKA 123
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 230 FQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIY 289
FQ L + + +G FY G + +++D KA ++SKA + LG
Sbjct: 45 FQYLSKACELNSGNGCRFLGDFYENG-KYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQ 103
Query: 290 ARGAGVERNYTKALEWLTHAAR 311
G GV +N +A++ A R
Sbjct: 104 YAGKGVVKNEKQAVKTFEKACR 125
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 510 IGDAYYYGRGTQRDYERAAEAYMHAR--SQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYY 567
+G+AYY Q DY++A E Y A +NA A +NLG + + QG D A YY
Sbjct: 15 LGNAYY----KQGDYQKAIEYYQKALELDPNNASAWYNLGNAY-YKQG---DYQKAIEYY 66
Query: 568 DQALEVDPAAKLPVTLALTSLWIRKNNA 595
+ALE+DP W R+ NA
Sbjct: 67 QKALELDPNN--------AKAWYRRGNA 86
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 10/75 (13%)
Query: 503 NEHAALLIGDAYYYGRGTQRDYERAAEAYMHAR--SQSNAQAMFNLGYMHEHGQGLPLDL 560
N A +G+AYY Q DY+ A E Y A +NA+A +NLG + + QG D
Sbjct: 42 NAEAWYNLGNAYY----KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY-YKQG---DY 93
Query: 561 HLAKRYYDQALEVDP 575
A YY +ALE+DP
Sbjct: 94 DEAIEYYQKALELDP 108
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 10/68 (14%)
Query: 510 IGDAYYYGRGTQRDYERAAEAYMHAR--SQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYY 567
+G+AYY Q DY+ A E Y A +NA+A +NLG + + QG D A YY
Sbjct: 15 LGNAYY----KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY-YKQG---DYDEAIEYY 66
Query: 568 DQALEVDP 575
+ALE+DP
Sbjct: 67 QKALELDP 74
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 10/68 (14%)
Query: 510 IGDAYYYGRGTQRDYERAAEAYMHAR--SQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYY 567
+G+AYY Q DY+ A E Y A +NA+A +NLG + + QG D A YY
Sbjct: 15 LGNAYY----KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY-YKQG---DYDEAIEYY 66
Query: 568 DQALEVDP 575
+ALE+DP
Sbjct: 67 QKALELDP 74
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 15/124 (12%)
Query: 510 IGDAYYYGRGTQRDYERAAEAYMHAR--SQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYY 567
+G+AYY Q DY+ A E Y A +A+A +NLG + + QG D A YY
Sbjct: 7 LGNAYY----KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY-YKQG---DYDEAIEYY 58
Query: 568 DQALEVDPAAKLPVTLALTSLWIRKNNADSFLVRLIDALPEVYPR-VEAWVE--NVFMEE 624
+ALE+DP + L + + ++ + D + AL E+ PR EAW N + ++
Sbjct: 59 QKALELDPRS-AEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELDPRSAEAWYNLGNAYYKQ 116
Query: 625 GNVT 628
G+
Sbjct: 117 GDYD 120
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 64/143 (44%), Gaps = 22/143 (15%)
Query: 435 YLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSL 494
Y +GD +A Y + EL +S AW Y G+ + + E +Q A L
Sbjct: 12 YKQGDYDEAIEYYQKALELD---PRSAEAW----YNLGNAYYKQGDYDEAIEYYQKALEL 64
Query: 495 WWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHAR--SQSNAQAMFNLGYMHEH 552
+ + A +G+AYY Q DY+ A E Y A +A+A +NLG + +
Sbjct: 65 -----DPRSAEAWYNLGNAYY----KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY-Y 114
Query: 553 GQGLPLDLHLAKRYYDQALEVDP 575
QG D A YY +ALE+DP
Sbjct: 115 KQG---DYDEAIEYYQKALELDP 134
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 14/125 (11%)
Query: 335 NYTKAKEYFEKAA--DNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVA--ANAGHQKA 390
+Y +A EY++KA D A YNLG YYK + D A +Y+ A + +A
Sbjct: 16 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPRSAEA 71
Query: 391 FYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALES--YLKGDVGKAFLLYS 448
+Y L ++ + + A Y+ E P S+ + + L + Y +GD +A Y
Sbjct: 72 WYNLGNAYYK----QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127
Query: 449 RMAEL 453
+ EL
Sbjct: 128 KALEL 132
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 10/76 (13%)
Query: 502 GNEHAALLIGDAYYYGRGTQRDYERAAEAYMHAR--SQSNAQAMFNLGYMHEHGQGLPLD 559
G+ A +G+AYY Q DY+ A E Y A +A+A +NLG + + QG D
Sbjct: 1 GSAEAWYNLGNAYY----KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY-YKQG---D 52
Query: 560 LHLAKRYYDQALEVDP 575
A YY +ALE+DP
Sbjct: 53 YDEAIEYYQKALELDP 68
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 517 GRGTQ-RDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDP 575
GRG++ DYE+AAEA+ A ++ A+ + + + L+ LA +YD+ALE+D
Sbjct: 31 GRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALA--FYDKALELDS 88
Query: 576 AA 577
+A
Sbjct: 89 SA 90
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 17/110 (15%)
Query: 262 DRTKALMWFSKAADKGEPQSMEFL--GEIYARGAGVERN---YTKALEWLTHAARQQLYS 316
D KA F+KA ++ + ++ ++ + + +ER Y KALE + AA +
Sbjct: 38 DYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAA-----T 92
Query: 317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKA--ADNEEAGGHYNLGVMYYK 364
AY G G +YV K+ Y +AK+ FEKA A E Y LG + K
Sbjct: 93 AYYGAGNVYVV-----KEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK 137
>pdb|3E4B|A Chain A, Crystal Structure Of Algk From Pseudomonas Fluorescens
Wcs374r
pdb|3E4B|B Chain B, Crystal Structure Of Algk From Pseudomonas Fluorescens
Wcs374r
pdb|3E4B|C Chain C, Crystal Structure Of Algk From Pseudomonas Fluorescens
Wcs374r
pdb|3E4B|D Chain D, Crystal Structure Of Algk From Pseudomonas Fluorescens
Wcs374r
Length = 452
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 248 IGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLT 307
+G YY G + + D A F KA + E + +LG+IY RG + KAL+ L
Sbjct: 289 LGKLYYEG-KWVPADAKAAEAHFEKAVGR-EVAADYYLGQIYRRGYLGKVYPQKALDHLL 346
Query: 308 HAARQQLYSAYNGIGYLYVKGYGVE 332
AAR SA I L+ +G G +
Sbjct: 347 TAARNGQNSADFAIAQLFSQGKGTK 371
>pdb|3UW3|A Chain A, Crystal Structure Of An Aspartate-Semialdehyde
Dehydrogenase From Burkholderia Thailandensis
pdb|3UW3|B Chain B, Crystal Structure Of An Aspartate-Semialdehyde
Dehydrogenase From Burkholderia Thailandensis
Length = 377
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 8/125 (6%)
Query: 83 GAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFL---YGMGMM 139
G +NG+ ++ SA+ + D RV+ + + G P A S++ ++ G GM
Sbjct: 183 GTLNGAVAAQLADPASAILDIDRRVLAAMNGDAMPTSQFGVPLAGSLIPWIDKDLGNGMS 242
Query: 140 RERNKGKA----FLYHHFAAEGGNIQ-SKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSF 194
RE KG A L E G++ + V +R +KL ++ +N
Sbjct: 243 REEWKGGAETNKILGKPAMGEPGSVPVDGLCVRIGAMRCHSQALTIKLKKDVPLDEINGI 302
Query: 195 LISKD 199
L S +
Sbjct: 303 LASAN 307
>pdb|2JGJ|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Methamidophos
Length = 535
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 246 YKIGLFYYFGLRGLRR--------DRTKALMWFSK--AADKGEPQSMEFLGEIYARGAGV 295
Y++G F + L G R D+ AL W + AA G+P S+ GE A A V
Sbjct: 148 YRVGTFGFLALPGSREAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGEXXAGAASV 207
>pdb|3DL7|B Chain B, Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun- Update
Length = 534
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 246 YKIGLFYYFGLRGLRR--------DRTKALMWFSK--AADKGEPQSMEFLGEIYARGAGV 295
Y++G F + L G R D+ AL W + AA G+P S+ GE A A V
Sbjct: 148 YRVGTFGFLALPGSREAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGEXXAGAASV 207
>pdb|2JGE|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Non-Aged Methamidophos
Length = 533
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 246 YKIGLFYYFGLRGLRR--------DRTKALMWFSK--AADKGEPQSMEFLGEIYARGAGV 295
Y++G F + L G R D+ AL W + AA G+P S+ GE A A V
Sbjct: 148 YRVGTFGFLALPGSREAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGEXXAGAASV 207
>pdb|3DL7|A Chain A, Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun- Update
Length = 538
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 246 YKIGLFYYFGLRGLRR--------DRTKALMWFSK--AADKGEPQSMEFLGEIYARGAGV 295
Y++G F + L G R D+ AL W + AA G+P S+ GE A A V
Sbjct: 151 YRVGTFGFLALPGSREAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGEXXAGAASV 210
>pdb|2JGE|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Non-Aged Methamidophos
pdb|2JGJ|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Methamidophos
Length = 536
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 246 YKIGLFYYFGLRGLRR--------DRTKALMWFSK--AADKGEPQSMEFLGEIYARGAGV 295
Y++G F + L G R D+ AL W + AA G+P S+ GE A A V
Sbjct: 151 YRVGTFGFLALPGSREAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGEXXAGAASV 210
>pdb|1U7N|A Chain A, Crystal Structure Of The Fatty AcidPHOSPHOLIPID SYNTHESIS
Protein Plsx From Enterococcus Faecalis V583
pdb|1U7N|B Chain B, Crystal Structure Of The Fatty AcidPHOSPHOLIPID SYNTHESIS
Protein Plsx From Enterococcus Faecalis V583
Length = 336
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 47/137 (34%), Gaps = 21/137 (15%)
Query: 154 AAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIA-------------VNSFLISKDS 200
A G N + +QD D +LY + AEI + + S D
Sbjct: 10 AXGGDNAPQAIVEGVXLAKQDFPDIEFQLYGKEAEIKKYITDEKNITIIHTDEKIASDDE 69
Query: 201 PVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLR 260
PV + IR A A GE D F GN GA+ GLF ++ +
Sbjct: 70 PV-KAIRRKKTASXVLAAQAVKNGEADAIFS-------AGNTGALLAAGLFIVGRIKNVE 121
Query: 261 RDRTKALMWFSKAADKG 277
R + + DKG
Sbjct: 122 RPGLXSTLPVXGEPDKG 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,928,962
Number of Sequences: 62578
Number of extensions: 827323
Number of successful extensions: 1703
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1622
Number of HSP's gapped (non-prelim): 59
length of query: 672
length of database: 14,973,337
effective HSP length: 105
effective length of query: 567
effective length of database: 8,402,647
effective search space: 4764300849
effective search space used: 4764300849
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)