Query 005877
Match_columns 672
No_of_seqs 474 out of 3296
Neff 9.6
Searched_HMMs 46136
Date Thu Mar 28 15:03:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005877.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005877hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1550 Extracellular protein 100.0 1.2E-36 2.6E-41 333.3 33.0 425 108-586 107-551 (552)
2 KOG4626 O-linked N-acetylgluco 100.0 5.2E-34 1.1E-38 290.2 33.3 410 105-580 61-492 (966)
3 KOG4626 O-linked N-acetylgluco 100.0 4.5E-34 9.7E-39 290.7 29.6 422 62-552 57-502 (966)
4 TIGR02917 PEP_TPR_lipo putativ 100.0 6.5E-27 1.4E-31 277.2 53.1 438 65-576 375-869 (899)
5 TIGR02917 PEP_TPR_lipo putativ 100.0 5.1E-27 1.1E-31 278.1 49.8 432 67-572 445-899 (899)
6 KOG1550 Extracellular protein 100.0 9.4E-28 2E-32 263.2 31.4 413 69-538 107-539 (552)
7 PRK11447 cellulose synthase su 100.0 5.7E-25 1.2E-29 263.8 49.3 328 217-577 276-670 (1157)
8 TIGR00990 3a0801s09 mitochondr 100.0 3.1E-24 6.8E-29 242.1 45.2 416 87-576 129-574 (615)
9 PRK11447 cellulose synthase su 100.0 3.9E-24 8.4E-29 256.6 48.6 399 105-572 282-739 (1157)
10 KOG2002 TPR-containing nuclear 99.9 9.2E-23 2E-27 219.4 42.6 476 63-592 209-729 (1018)
11 PRK09782 bacteriophage N4 rece 99.9 1.5E-22 3.2E-27 232.8 42.5 454 56-578 47-711 (987)
12 KOG2002 TPR-containing nuclear 99.9 1.3E-22 2.9E-27 218.1 37.4 437 68-578 251-750 (1018)
13 TIGR00990 3a0801s09 mitochondr 99.9 4.4E-21 9.6E-26 216.5 44.8 387 124-578 127-542 (615)
14 PRK10049 pgaA outer membrane p 99.9 1E-19 2.2E-24 209.4 46.4 382 105-581 28-464 (765)
15 PRK15174 Vi polysaccharide exp 99.9 1E-19 2.2E-24 205.0 41.2 307 105-454 55-382 (656)
16 PRK09782 bacteriophage N4 rece 99.9 2.7E-18 5.9E-23 197.8 52.7 430 87-578 46-677 (987)
17 PRK15174 Vi polysaccharide exp 99.9 3.2E-19 7E-24 201.0 42.7 306 141-537 55-381 (656)
18 PRK10049 pgaA outer membrane p 99.9 1.2E-17 2.6E-22 192.2 46.9 346 141-578 28-427 (765)
19 COG0790 FOG: TPR repeat, SEL1 99.9 2.2E-19 4.8E-24 183.8 26.0 204 221-426 52-271 (292)
20 COG0790 FOG: TPR repeat, SEL1 99.8 1.5E-18 3.3E-23 177.6 26.4 205 257-463 51-276 (292)
21 KOG2003 TPR repeat-containing 99.8 6.7E-18 1.5E-22 167.3 28.4 131 125-275 202-337 (840)
22 KOG0547 Translocase of outer m 99.8 8.7E-16 1.9E-20 154.4 36.4 368 105-537 128-566 (606)
23 PRK14574 hmsH outer membrane p 99.8 5.6E-15 1.2E-19 167.2 45.4 427 87-584 36-524 (822)
24 PRK11788 tetratricopeptide rep 99.8 2.1E-15 4.6E-20 161.3 35.6 288 241-572 34-346 (389)
25 PRK11788 tetratricopeptide rep 99.8 1.1E-15 2.4E-20 163.4 33.4 216 216-453 113-347 (389)
26 KOG0547 Translocase of outer m 99.8 4.9E-15 1.1E-19 149.1 34.5 383 127-574 118-567 (606)
27 KOG1155 Anaphase-promoting com 99.8 9.9E-15 2.1E-19 146.1 36.4 306 216-574 170-496 (559)
28 PLN03218 maturation of RBCL 1; 99.8 1.6E-13 3.5E-18 159.6 51.8 408 105-574 383-842 (1060)
29 PLN03081 pentatricopeptide (PP 99.8 4.5E-15 9.7E-20 170.3 37.9 303 105-454 100-421 (697)
30 PLN03081 pentatricopeptide (PP 99.7 1.5E-14 3.2E-19 166.0 41.8 402 105-574 136-558 (697)
31 KOG2003 TPR repeat-containing 99.7 3.8E-15 8.2E-20 147.9 31.3 400 105-549 214-703 (840)
32 PLN03218 maturation of RBCL 1; 99.7 7.9E-13 1.7E-17 154.0 52.2 373 141-578 383-788 (1060)
33 KOG1173 Anaphase-promoting com 99.7 1.6E-13 3.4E-18 141.0 38.8 428 105-579 29-524 (611)
34 PLN03077 Protein ECB2; Provisi 99.7 1.7E-13 3.7E-18 161.1 42.9 428 66-573 235-720 (857)
35 KOG1155 Anaphase-promoting com 99.7 9.7E-14 2.1E-18 139.1 33.9 343 123-536 163-535 (559)
36 KOG1126 DNA-binding cell divis 99.7 5.8E-15 1.3E-19 154.6 26.0 292 243-579 318-626 (638)
37 KOG1126 DNA-binding cell divis 99.7 5.5E-15 1.2E-19 154.7 25.7 294 125-459 318-626 (638)
38 PLN03077 Protein ECB2; Provisi 99.7 1E-12 2.2E-17 154.6 43.5 77 485-571 537-616 (857)
39 KOG1129 TPR repeat-containing 99.6 2.1E-14 4.6E-19 137.6 21.0 231 314-581 222-466 (478)
40 PRK14574 hmsH outer membrane p 99.6 1.1E-11 2.5E-16 140.6 46.8 396 118-578 28-484 (822)
41 KOG1173 Anaphase-promoting com 99.6 1.7E-12 3.6E-17 133.6 31.8 408 83-552 47-535 (611)
42 PRK11189 lipoprotein NlpI; Pro 99.6 9.7E-13 2.1E-17 134.2 26.1 225 335-590 41-282 (296)
43 PRK12370 invasion protein regu 99.6 1.9E-12 4E-17 144.0 30.2 243 141-456 274-538 (553)
44 PRK12370 invasion protein regu 99.6 1.2E-12 2.6E-17 145.5 28.7 173 261-452 318-501 (553)
45 KOG2076 RNA polymerase III tra 99.6 6.2E-12 1.3E-16 136.0 32.5 305 105-451 152-510 (895)
46 PF13429 TPR_15: Tetratricopep 99.5 5.2E-14 1.1E-18 143.1 13.4 250 127-419 11-275 (280)
47 TIGR00540 hemY_coli hemY prote 99.5 2.7E-11 5.8E-16 129.8 34.7 283 216-573 90-399 (409)
48 KOG1129 TPR repeat-containing 99.5 1.6E-13 3.4E-18 131.6 15.3 222 128-423 227-460 (478)
49 PF13429 TPR_15: Tetratricopep 99.5 5E-14 1.1E-18 143.2 12.5 247 283-572 12-276 (280)
50 PRK10747 putative protoheme IX 99.5 1.8E-10 4E-15 122.7 35.9 286 217-574 91-391 (398)
51 TIGR02521 type_IV_pilW type IV 99.5 1.1E-11 2.5E-16 121.5 24.9 191 352-574 31-233 (234)
52 TIGR00540 hemY_coli hemY prote 99.5 6.5E-11 1.4E-15 126.8 32.4 285 128-453 88-399 (409)
53 PRK10747 putative protoheme IX 99.5 1.6E-10 3.5E-15 123.1 35.1 212 217-452 160-389 (398)
54 PRK11189 lipoprotein NlpI; Pro 99.5 1.8E-11 4E-16 124.8 26.4 213 262-538 41-266 (296)
55 KOG1130 Predicted G-alpha GTPa 99.5 5.8E-13 1.3E-17 131.4 14.2 245 296-573 30-344 (639)
56 KOG4014 Uncharacterized conser 99.5 4E-12 8.6E-17 112.1 17.1 178 240-421 32-233 (248)
57 TIGR02521 type_IV_pilW type IV 99.5 3.2E-11 7E-16 118.3 25.9 190 241-452 30-231 (234)
58 KOG2076 RNA polymerase III tra 99.4 1.2E-09 2.7E-14 118.5 37.7 275 216-533 179-508 (895)
59 KOG1840 Kinesin light chain [C 99.4 2.5E-11 5.3E-16 129.0 24.1 133 126-311 201-353 (508)
60 KOG4162 Predicted calmodulin-b 99.4 6.3E-10 1.4E-14 118.8 33.9 365 161-578 324-788 (799)
61 KOG4014 Uncharacterized conser 99.4 5.3E-12 1.1E-16 111.3 15.1 199 277-574 32-234 (248)
62 KOG0548 Molecular co-chaperone 99.4 4.9E-10 1.1E-14 115.3 31.3 230 279-551 224-471 (539)
63 KOG1840 Kinesin light chain [C 99.4 1.7E-10 3.7E-15 122.7 28.0 225 280-535 200-477 (508)
64 KOG1127 TPR repeat-containing 99.4 6.9E-09 1.5E-13 113.4 39.2 180 105-311 471-658 (1238)
65 COG2956 Predicted N-acetylgluc 99.4 4.5E-10 9.8E-15 108.4 26.8 266 88-398 38-325 (389)
66 KOG1130 Predicted G-alpha GTPa 99.4 7.8E-12 1.7E-16 123.5 15.0 252 105-419 30-342 (639)
67 KOG1125 TPR repeat-containing 99.4 4.5E-11 9.8E-16 123.8 20.4 94 88-192 288-385 (579)
68 KOG0548 Molecular co-chaperone 99.4 2.2E-09 4.7E-14 110.6 32.3 396 105-578 15-460 (539)
69 COG3063 PilF Tfp pilus assembl 99.3 2.6E-10 5.6E-15 105.4 21.5 183 242-446 35-229 (250)
70 KOG1125 TPR repeat-containing 99.3 7.2E-11 1.6E-15 122.3 19.6 222 215-453 290-527 (579)
71 KOG4162 Predicted calmodulin-b 99.3 6.1E-09 1.3E-13 111.4 31.8 382 105-537 336-783 (799)
72 COG3063 PilF Tfp pilus assembl 99.3 2.7E-10 6E-15 105.2 18.8 159 389-575 36-204 (250)
73 KOG0495 HAT repeat protein [RN 99.3 1.5E-07 3.2E-12 98.9 40.2 314 218-577 558-884 (913)
74 COG2956 Predicted N-acetylgluc 99.3 1.3E-08 2.8E-13 98.5 29.6 216 217-454 42-279 (389)
75 KOG1174 Anaphase-promoting com 99.2 3.4E-07 7.4E-12 91.4 37.5 381 122-578 95-505 (564)
76 KOG0624 dsRNA-activated protei 99.2 2.4E-08 5.1E-13 97.2 28.6 319 122-538 36-371 (504)
77 KOG0624 dsRNA-activated protei 99.2 7.2E-08 1.6E-12 93.9 31.5 314 85-454 38-371 (504)
78 KOG1127 TPR repeat-containing 99.2 5.3E-08 1.2E-12 106.6 33.4 440 69-572 474-995 (1238)
79 PLN02789 farnesyltranstransfer 99.2 1.7E-08 3.6E-13 103.0 27.0 244 296-576 33-305 (320)
80 cd05804 StaR_like StaR_like; a 99.1 1.8E-07 4E-12 98.6 33.6 305 120-460 2-347 (355)
81 KOG0495 HAT repeat protein [RN 99.1 1.7E-06 3.7E-11 91.2 38.6 396 143-578 421-851 (913)
82 cd05804 StaR_like StaR_like; a 99.1 2.9E-07 6.3E-12 97.1 33.4 302 238-574 2-337 (355)
83 TIGR03302 OM_YfiO outer membra 99.1 1.9E-08 4E-13 99.5 21.8 176 84-310 32-230 (235)
84 TIGR03302 OM_YfiO outer membra 99.1 2E-08 4.4E-13 99.2 21.2 175 351-575 32-234 (235)
85 KOG3617 WD40 and TPR repeat-co 99.0 3E-06 6.5E-11 91.2 37.2 224 105-383 741-994 (1416)
86 KOG1174 Anaphase-promoting com 99.0 2.2E-07 4.8E-12 92.7 26.9 261 157-454 229-501 (564)
87 PRK04841 transcriptional regul 99.0 1.1E-06 2.3E-11 104.9 36.1 350 165-577 346-764 (903)
88 KOG3785 Uncharacterized conser 99.0 1.2E-06 2.6E-11 85.9 28.2 392 105-567 35-451 (557)
89 KOG1156 N-terminal acetyltrans 99.0 3.9E-06 8.5E-11 88.7 33.9 356 82-502 38-469 (700)
90 COG3071 HemY Uncharacterized e 99.0 2E-06 4.4E-11 86.1 30.2 279 102-419 94-388 (400)
91 PLN02789 farnesyltranstransfer 99.0 7.3E-07 1.6E-11 91.1 28.0 246 105-424 33-305 (320)
92 KOG2376 Signal recognition par 98.9 3.8E-06 8.3E-11 87.9 32.3 435 60-568 19-515 (652)
93 PRK15359 type III secretion sy 98.9 5.6E-08 1.2E-12 87.6 15.9 117 412-549 13-135 (144)
94 PRK04841 transcriptional regul 98.9 2.4E-06 5.2E-11 102.0 34.5 280 216-537 415-760 (903)
95 KOG1156 N-terminal acetyltrans 98.9 2E-05 4.4E-10 83.5 35.4 400 86-580 8-442 (700)
96 COG3071 HemY Uncharacterized e 98.8 1.5E-05 3.2E-10 80.1 31.4 242 296-573 131-390 (400)
97 KOG0550 Molecular chaperone (D 98.8 4.1E-07 8.8E-12 91.1 19.5 259 141-454 62-351 (486)
98 KOG2376 Signal recognition par 98.8 0.00011 2.5E-09 77.2 37.8 410 102-577 22-491 (652)
99 PRK10370 formate-dependent nit 98.8 2.6E-07 5.6E-12 88.0 17.2 120 405-577 52-177 (198)
100 PRK15359 type III secretion sy 98.8 1.9E-07 4.2E-12 84.1 15.5 117 341-466 14-136 (144)
101 PF12569 NARP1: NMDA receptor- 98.8 1.8E-05 3.8E-10 85.8 32.0 223 216-454 44-292 (517)
102 KOG3785 Uncharacterized conser 98.8 3.4E-05 7.4E-10 75.9 29.9 401 63-534 32-454 (557)
103 KOG0550 Molecular chaperone (D 98.7 3.5E-06 7.6E-11 84.5 23.4 254 105-386 62-351 (486)
104 PRK14720 transcript cleavage f 98.7 1.8E-06 3.8E-11 97.7 23.8 213 120-400 27-269 (906)
105 KOG1128 Uncharacterized conser 98.7 6.2E-07 1.3E-11 95.9 18.6 210 213-454 401-617 (777)
106 KOG4340 Uncharacterized conser 98.7 5.3E-06 1.2E-10 79.6 23.0 295 105-447 23-333 (459)
107 PF14938 SNAP: Soluble NSF att 98.7 4.9E-07 1.1E-11 91.6 17.1 202 174-426 29-271 (282)
108 PRK10370 formate-dependent nit 98.7 3.7E-07 8E-12 87.0 15.0 116 105-277 52-174 (198)
109 PRK14720 transcript cleavage f 98.7 3.2E-06 7E-11 95.7 24.1 230 238-551 27-268 (906)
110 KOG4340 Uncharacterized conser 98.7 3.2E-05 6.9E-10 74.4 26.0 283 65-400 22-322 (459)
111 KOG2047 mRNA splicing factor [ 98.7 0.00022 4.7E-09 75.7 34.1 372 161-577 249-692 (835)
112 TIGR02552 LcrH_SycD type III s 98.7 5.3E-07 1.1E-11 80.5 13.5 86 486-579 31-120 (135)
113 KOG1128 Uncharacterized conser 98.6 1.6E-06 3.4E-11 92.9 16.8 213 160-422 398-617 (777)
114 PF12569 NARP1: NMDA receptor- 98.6 0.00025 5.5E-09 77.0 33.3 250 215-498 9-288 (517)
115 PF14938 SNAP: Soluble NSF att 98.5 2.7E-06 5.8E-11 86.2 16.4 163 261-453 29-225 (282)
116 KOG3617 WD40 and TPR repeat-co 98.5 0.00016 3.5E-09 78.4 28.1 259 126-450 860-1171(1416)
117 PRK15179 Vi polysaccharide bio 98.5 1.3E-05 2.8E-10 90.1 21.1 128 386-537 84-217 (694)
118 PF13414 TPR_11: TPR repeat; P 98.5 4.8E-07 1.1E-11 70.2 7.0 65 503-575 2-69 (69)
119 TIGR02552 LcrH_SycD type III s 98.5 3.4E-06 7.4E-11 75.2 13.2 105 342-454 5-115 (135)
120 PRK15179 Vi polysaccharide bio 98.5 6.7E-06 1.5E-10 92.4 18.3 130 122-312 84-217 (694)
121 COG5010 TadD Flp pilus assembl 98.4 2.8E-05 6E-10 74.1 18.1 154 386-568 65-226 (257)
122 PRK15363 pathogenicity island 98.4 2.7E-06 5.9E-11 75.6 10.5 96 84-190 34-133 (157)
123 COG5010 TadD Flp pilus assembl 98.4 1E-05 2.3E-10 77.0 15.0 155 351-534 66-228 (257)
124 PRK15363 pathogenicity island 98.4 1E-05 2.2E-10 72.0 13.8 94 316-422 36-133 (157)
125 KOG3060 Uncharacterized conser 98.3 5.7E-05 1.2E-09 71.4 17.4 151 141-313 65-221 (289)
126 KOG1941 Acetylcholine receptor 98.3 0.0014 3E-08 65.2 27.2 219 280-535 84-358 (518)
127 PRK10866 outer membrane biogen 98.2 0.00016 3.6E-09 71.1 20.7 173 85-308 32-237 (243)
128 PF13414 TPR_11: TPR repeat; P 98.2 2.7E-06 5.8E-11 65.9 6.5 64 123-190 2-68 (69)
129 PRK02603 photosystem I assembl 98.2 3.8E-05 8.2E-10 71.7 15.4 89 351-447 34-129 (172)
130 PF04733 Coatomer_E: Coatomer 98.2 2.4E-05 5.1E-10 79.0 14.9 246 296-579 14-271 (290)
131 KOG1915 Cell cycle control pro 98.2 0.012 2.5E-07 60.9 43.4 417 103-577 84-540 (677)
132 KOG1915 Cell cycle control pro 98.2 0.013 2.8E-07 60.5 39.1 378 141-574 86-501 (677)
133 PF12688 TPR_5: Tetratrico pep 98.2 5.7E-05 1.2E-09 65.0 13.2 93 352-452 1-103 (120)
134 KOG2047 mRNA splicing factor [ 98.1 0.019 4.1E-07 61.5 34.9 371 127-540 251-690 (835)
135 PF04733 Coatomer_E: Coatomer 98.1 2.7E-05 5.9E-10 78.6 13.0 215 215-451 40-263 (290)
136 PRK02603 photosystem I assembl 98.1 9.1E-05 2E-09 69.1 15.5 79 277-364 33-118 (172)
137 COG4783 Putative Zn-dependent 98.1 0.00012 2.7E-09 75.6 17.0 147 84-255 271-421 (484)
138 CHL00033 ycf3 photosystem I as 98.1 8.6E-05 1.9E-09 69.0 14.9 93 335-435 14-117 (168)
139 PF09976 TPR_21: Tetratricopep 98.1 0.0001 2.3E-09 66.5 14.8 50 405-454 24-78 (145)
140 TIGR02795 tol_pal_ybgF tol-pal 98.1 4E-05 8.8E-10 66.3 11.7 98 457-578 3-110 (119)
141 KOG1941 Acetylcholine receptor 98.1 0.00094 2E-08 66.3 21.7 251 296-576 19-323 (518)
142 PF13432 TPR_16: Tetratricopep 98.1 1.1E-05 2.4E-10 61.6 6.8 62 508-577 1-64 (65)
143 TIGR02795 tol_pal_ybgF tol-pal 98.1 6.7E-05 1.5E-09 64.9 12.5 93 353-453 3-105 (119)
144 PF09976 TPR_21: Tetratricopep 98.1 6.1E-05 1.3E-09 68.0 12.4 110 334-451 25-145 (145)
145 PLN03088 SGT1, suppressor of 98.1 6.3E-05 1.4E-09 78.7 14.1 104 428-551 6-115 (356)
146 CHL00033 ycf3 photosystem I as 98.0 0.0001 2.2E-09 68.4 13.9 94 262-364 14-118 (168)
147 PLN03088 SGT1, suppressor of 98.0 9.5E-05 2.1E-09 77.4 15.0 94 369-466 15-114 (356)
148 PF12895 Apc3: Anaphase-promot 98.0 1.7E-05 3.8E-10 64.1 6.8 78 105-186 2-84 (84)
149 COG4783 Putative Zn-dependent 98.0 0.001 2.2E-08 69.0 20.9 149 156-349 302-454 (484)
150 KOG0553 TPR repeat-containing 98.0 9.4E-05 2E-09 72.0 12.7 105 359-471 88-198 (304)
151 PRK10866 outer membrane biogen 98.0 0.0014 2.9E-08 64.6 21.0 170 388-569 32-237 (243)
152 cd00189 TPR Tetratricopeptide 98.0 8.4E-05 1.8E-09 60.5 10.8 94 459-576 3-100 (100)
153 KOG3060 Uncharacterized conser 98.0 0.0015 3.2E-08 62.1 19.7 72 500-576 150-223 (289)
154 KOG1586 Protein required for f 98.0 0.00081 1.8E-08 62.9 17.4 190 228-454 3-225 (288)
155 cd00189 TPR Tetratricopeptide 98.0 9.7E-05 2.1E-09 60.1 10.7 90 355-452 3-96 (100)
156 PF13432 TPR_16: Tetratricopep 98.0 2.2E-05 4.8E-10 59.9 6.2 61 128-192 1-63 (65)
157 PF12688 TPR_5: Tetratrico pep 97.9 0.00016 3.6E-09 62.1 11.8 58 390-451 3-65 (120)
158 KOG3616 Selective LIM binding 97.9 0.011 2.3E-07 63.9 26.9 317 105-454 745-1109(1636)
159 PF12895 Apc3: Anaphase-promot 97.9 3.6E-05 7.8E-10 62.2 7.0 75 370-449 3-83 (84)
160 PF13525 YfiO: Outer membrane 97.9 0.0013 2.7E-08 63.1 18.8 153 278-443 4-197 (203)
161 PF13525 YfiO: Outer membrane 97.9 0.0014 2.9E-08 62.9 18.9 168 351-563 4-197 (203)
162 PRK10803 tol-pal system protei 97.9 0.00015 3.1E-09 72.0 12.4 86 485-578 156-251 (263)
163 KOG0553 TPR repeat-containing 97.9 0.00028 6E-09 68.8 13.4 102 429-550 86-193 (304)
164 PRK11906 transcriptional regul 97.9 0.00076 1.7E-08 70.3 17.3 161 283-452 259-435 (458)
165 PRK10153 DNA-binding transcrip 97.8 0.00061 1.3E-08 74.5 17.2 124 439-578 357-487 (517)
166 PRK10803 tol-pal system protei 97.8 0.00016 3.4E-09 71.8 11.5 99 84-192 141-249 (263)
167 PF13424 TPR_12: Tetratricopep 97.8 5.6E-05 1.2E-09 60.0 6.1 62 504-573 5-75 (78)
168 KOG2471 TPR repeat-containing 97.7 0.014 2.9E-07 60.6 23.2 111 240-364 238-381 (696)
169 PRK11906 transcriptional regul 97.7 0.0017 3.7E-08 67.8 16.9 133 440-590 274-415 (458)
170 PRK15331 chaperone protein Sic 97.7 0.00078 1.7E-08 60.4 12.2 92 426-537 39-134 (165)
171 COG4785 NlpI Lipoprotein NlpI, 97.7 0.0052 1.1E-07 57.0 17.5 202 353-585 66-278 (297)
172 PRK15331 chaperone protein Sic 97.7 0.0016 3.5E-08 58.4 14.0 80 333-420 50-133 (165)
173 PF13424 TPR_12: Tetratricopep 97.7 0.00015 3.3E-09 57.5 6.8 59 317-384 7-74 (78)
174 PRK10153 DNA-binding transcrip 97.6 0.0023 4.9E-08 70.1 17.5 135 281-424 341-485 (517)
175 KOG0543 FKBP-type peptidyl-pro 97.6 0.0012 2.6E-08 67.1 13.9 77 388-468 257-337 (397)
176 COG4235 Cytochrome c biogenesi 97.6 0.0016 3.4E-08 64.0 14.3 103 156-312 152-256 (287)
177 COG0457 NrfG FOG: TPR repeat [ 97.6 0.042 9.1E-07 52.6 24.7 210 335-576 38-268 (291)
178 KOG1586 Protein required for f 97.6 0.044 9.5E-07 51.7 22.3 154 265-450 3-180 (288)
179 KOG3081 Vesicle coat complex C 97.6 0.031 6.7E-07 53.8 21.7 226 220-467 18-252 (299)
180 smart00671 SEL1 Sel1-like repe 97.5 0.00015 3.3E-09 47.7 4.4 34 541-574 2-35 (36)
181 PLN03098 LPA1 LOW PSII ACCUMUL 97.5 0.00034 7.5E-09 72.7 8.6 68 499-574 70-142 (453)
182 COG4235 Cytochrome c biogenesi 97.5 0.002 4.4E-08 63.2 13.5 112 108-276 138-256 (287)
183 KOG0543 FKBP-type peptidyl-pro 97.5 0.00094 2E-08 67.9 11.3 120 429-588 213-334 (397)
184 COG4785 NlpI Lipoprotein NlpI, 97.4 0.018 4E-07 53.5 17.6 38 154-191 93-130 (297)
185 COG1729 Uncharacterized protei 97.4 0.0017 3.7E-08 63.0 11.5 80 369-452 154-243 (262)
186 KOG3616 Selective LIM binding 97.4 0.32 6.9E-06 53.1 32.7 318 216-576 667-1027(1636)
187 smart00671 SEL1 Sel1-like repe 97.4 0.00033 7.1E-09 46.1 4.4 36 504-539 1-36 (36)
188 COG1729 Uncharacterized protei 97.3 0.0022 4.8E-08 62.2 11.3 86 485-578 154-249 (262)
189 COG0457 NrfG FOG: TPR repeat [ 97.3 0.14 3.1E-06 48.7 24.8 211 224-456 37-268 (291)
190 KOG4555 TPR repeat-containing 97.3 0.0046 1E-07 52.5 11.5 93 359-459 50-150 (175)
191 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.00073 1.6E-08 70.3 8.2 67 119-189 70-141 (453)
192 PF08238 Sel1: Sel1 repeat; I 97.3 0.00031 6.7E-09 47.2 3.6 35 540-574 1-38 (39)
193 PF08238 Sel1: Sel1 repeat; I 97.2 0.00048 1E-08 46.2 4.0 36 504-539 1-39 (39)
194 PF09295 ChAPs: ChAPs (Chs5p-A 97.1 0.0088 1.9E-07 62.7 13.8 110 105-235 182-293 (395)
195 PF09295 ChAPs: ChAPs (Chs5p-A 97.1 0.029 6.3E-07 58.9 17.3 95 222-326 181-279 (395)
196 PF14559 TPR_19: Tetratricopep 97.0 0.0013 2.9E-08 50.4 5.3 49 141-189 4-54 (68)
197 KOG3081 Vesicle coat complex C 97.0 0.36 7.8E-06 46.8 25.6 247 296-578 21-276 (299)
198 KOG1070 rRNA processing protei 97.0 0.21 4.5E-06 58.6 24.2 175 333-538 1471-1664(1710)
199 KOG4555 TPR repeat-containing 97.0 0.0097 2.1E-07 50.6 10.3 98 141-250 56-155 (175)
200 PF13371 TPR_9: Tetratricopept 96.9 0.0025 5.5E-08 49.6 6.4 60 511-578 2-63 (73)
201 PF13371 TPR_9: Tetratricopept 96.9 0.0024 5.3E-08 49.7 5.7 57 131-191 2-60 (73)
202 PF14559 TPR_19: Tetratricopep 96.8 0.0036 7.9E-08 47.9 6.4 60 105-168 4-67 (68)
203 PF00515 TPR_1: Tetratricopept 96.8 0.0025 5.4E-08 41.2 4.3 33 540-576 1-33 (34)
204 KOG2471 TPR repeat-containing 96.7 0.27 5.8E-06 51.4 20.1 145 106-254 220-381 (696)
205 PF07719 TPR_2: Tetratricopept 96.7 0.0034 7.3E-08 40.4 4.5 33 540-576 1-33 (34)
206 COG4105 ComL DNA uptake lipopr 96.6 0.47 1E-05 45.9 19.8 155 141-364 47-216 (254)
207 KOG1585 Protein required for f 96.5 0.59 1.3E-05 44.7 19.4 42 520-566 202-249 (308)
208 PF10300 DUF3808: Protein of u 96.4 0.13 2.9E-06 55.9 17.4 152 293-452 198-375 (468)
209 KOG1585 Protein required for f 96.4 0.33 7.2E-06 46.3 17.2 56 129-188 36-99 (308)
210 KOG1070 rRNA processing protei 96.4 1.1 2.4E-05 53.0 24.3 201 157-422 1455-1664(1710)
211 PF13512 TPR_18: Tetratricopep 96.4 0.081 1.7E-06 46.6 12.2 95 351-453 9-128 (142)
212 COG4700 Uncharacterized protei 96.3 0.29 6.3E-06 44.7 15.6 62 124-189 89-153 (251)
213 PF10300 DUF3808: Protein of u 96.2 0.3 6.5E-06 53.2 18.4 163 367-575 199-378 (468)
214 PF13428 TPR_14: Tetratricopep 96.2 0.012 2.6E-07 40.6 4.9 41 124-168 1-43 (44)
215 COG4105 ComL DNA uptake lipopr 96.1 1.3 2.9E-05 42.9 19.7 170 241-445 33-225 (254)
216 PF13428 TPR_14: Tetratricopep 96.0 0.013 2.7E-07 40.5 4.4 40 505-548 2-43 (44)
217 PF13512 TPR_18: Tetratricopep 96.0 0.2 4.4E-06 44.1 12.8 109 387-500 9-127 (142)
218 COG4700 Uncharacterized protei 96.0 0.62 1.3E-05 42.6 15.8 117 427-567 92-216 (251)
219 PF00515 TPR_1: Tetratricopept 96.0 0.012 2.5E-07 37.9 3.8 32 160-191 1-32 (34)
220 PF13431 TPR_17: Tetratricopep 96.0 0.0069 1.5E-07 39.1 2.6 30 151-180 2-33 (34)
221 PF07719 TPR_2: Tetratricopept 95.8 0.014 3.1E-07 37.4 3.7 32 160-191 1-32 (34)
222 PF13176 TPR_7: Tetratricopept 95.7 0.021 4.6E-07 37.4 4.4 29 162-190 1-29 (36)
223 PF13181 TPR_8: Tetratricopept 95.7 0.016 3.5E-07 37.2 3.6 32 541-576 2-33 (34)
224 PF13431 TPR_17: Tetratricopep 95.5 0.014 3E-07 37.7 2.8 30 531-564 2-33 (34)
225 PF13281 DUF4071: Domain of un 95.5 1.9 4.1E-05 44.8 19.6 175 389-579 142-340 (374)
226 KOG2796 Uncharacterized conser 95.4 2.9 6.3E-05 40.6 19.3 153 227-401 166-336 (366)
227 PF13176 TPR_7: Tetratricopept 95.2 0.03 6.4E-07 36.7 3.7 28 542-573 1-28 (36)
228 PF09986 DUF2225: Uncharacteri 95.0 0.2 4.4E-06 48.1 10.3 89 485-581 90-202 (214)
229 PF06552 TOM20_plant: Plant sp 94.9 0.29 6.2E-06 44.7 10.1 100 336-435 7-123 (186)
230 PF13174 TPR_6: Tetratricopept 94.7 0.043 9.4E-07 34.8 3.3 32 541-576 1-32 (33)
231 PF04184 ST7: ST7 protein; In 94.6 1.7 3.7E-05 46.1 16.3 163 92-277 171-376 (539)
232 PF13181 TPR_8: Tetratricopept 94.6 0.076 1.6E-06 34.0 4.3 31 161-191 2-32 (34)
233 PF13174 TPR_6: Tetratricopept 94.5 0.04 8.7E-07 34.9 2.8 31 161-191 1-31 (33)
234 PF04184 ST7: ST7 protein; In 94.5 2.3 5E-05 45.1 16.9 109 315-432 259-386 (539)
235 PF08631 SPO22: Meiosis protei 94.4 6.2 0.00014 39.7 23.0 116 333-453 6-150 (278)
236 KOG2300 Uncharacterized conser 94.2 8.9 0.00019 40.6 34.7 406 126-574 9-515 (629)
237 KOG4234 TPR repeat-containing 94.2 0.47 1E-05 43.9 9.8 103 427-578 98-202 (271)
238 PF06552 TOM20_plant: Plant sp 94.1 0.32 6.8E-06 44.5 8.5 84 108-192 7-112 (186)
239 COG2976 Uncharacterized protei 94.0 0.81 1.8E-05 42.3 11.0 95 356-458 93-193 (207)
240 KOG4234 TPR repeat-containing 93.9 0.81 1.8E-05 42.4 10.7 81 369-453 108-197 (271)
241 KOG2796 Uncharacterized conser 93.8 3.9 8.5E-05 39.7 15.5 42 335-380 192-236 (366)
242 PF13281 DUF4071: Domain of un 93.8 10 0.00022 39.6 19.8 27 428-454 309-335 (374)
243 COG2976 Uncharacterized protei 93.7 1.2 2.6E-05 41.3 11.5 90 428-537 93-188 (207)
244 KOG0545 Aryl-hydrocarbon recep 93.7 1.6 3.6E-05 41.7 12.6 126 425-586 179-306 (329)
245 PF09986 DUF2225: Uncharacteri 93.3 0.67 1.5E-05 44.5 9.9 49 258-310 88-145 (214)
246 KOG4648 Uncharacterized conser 93.2 0.32 6.9E-06 48.5 7.5 93 319-424 101-197 (536)
247 KOG2053 Mitochondrial inherita 93.2 19 0.00042 41.1 27.5 85 104-192 21-109 (932)
248 COG3898 Uncharacterized membra 92.1 16 0.00035 37.7 26.1 177 105-311 97-291 (531)
249 KOG4642 Chaperone-dependent E3 91.8 1.5 3.2E-05 41.9 9.7 87 482-576 20-110 (284)
250 COG4649 Uncharacterized protei 91.7 10 0.00022 34.6 14.2 131 141-288 71-209 (221)
251 KOG4648 Uncharacterized conser 91.6 0.48 1E-05 47.4 6.5 91 356-454 101-195 (536)
252 COG4649 Uncharacterized protei 91.1 12 0.00026 34.2 15.1 114 222-349 70-196 (221)
253 KOG3824 Huntingtin interacting 90.7 0.53 1.1E-05 46.4 5.8 79 85-167 109-191 (472)
254 PF13374 TPR_10: Tetratricopep 90.6 0.58 1.3E-05 31.2 4.5 32 161-192 3-34 (42)
255 smart00028 TPR Tetratricopepti 90.3 0.39 8.5E-06 29.2 3.3 30 542-575 3-32 (34)
256 PF13374 TPR_10: Tetratricopep 89.4 0.65 1.4E-05 31.0 4.0 28 505-536 3-30 (42)
257 PF03704 BTAD: Bacterial trans 89.2 2.6 5.6E-05 37.7 8.9 66 126-195 64-131 (146)
258 PF05843 Suf: Suppressor of fo 89.0 10 0.00023 38.2 14.1 110 336-453 17-136 (280)
259 PF05843 Suf: Suppressor of fo 88.8 11 0.00025 37.9 14.2 128 281-424 3-139 (280)
260 PF03704 BTAD: Bacterial trans 88.5 11 0.00023 33.6 12.5 60 388-451 62-123 (146)
261 PF11207 DUF2989: Protein of u 87.9 3.3 7.1E-05 38.8 8.5 70 372-446 122-200 (203)
262 COG3118 Thioredoxin domain-con 87.7 11 0.00023 37.7 12.3 81 105-189 147-265 (304)
263 PF11207 DUF2989: Protein of u 87.7 4.5 9.7E-05 38.0 9.3 71 225-305 121-200 (203)
264 PF10345 Cohesin_load: Cohesin 87.5 57 0.0012 37.1 35.7 131 85-236 59-205 (608)
265 KOG2300 Uncharacterized conser 87.4 44 0.00095 35.7 36.4 370 87-536 48-513 (629)
266 smart00028 TPR Tetratricopepti 87.3 0.53 1.1E-05 28.6 2.3 29 161-189 2-30 (34)
267 PF08631 SPO22: Meiosis protei 86.6 38 0.00082 34.1 28.2 133 141-312 6-150 (278)
268 KOG4642 Chaperone-dependent E3 85.7 2.9 6.3E-05 40.0 7.0 82 105-190 23-108 (284)
269 PF02259 FAT: FAT domain; Int 85.5 48 0.001 34.3 22.2 62 241-311 145-212 (352)
270 PF04053 Coatomer_WDAD: Coatom 85.0 16 0.00035 39.3 13.4 84 157-272 344-427 (443)
271 KOG3364 Membrane protein invol 84.5 6.7 0.00015 34.1 8.0 71 503-578 31-105 (149)
272 PF14853 Fis1_TPR_C: Fis1 C-te 84.5 2 4.3E-05 30.8 4.2 34 541-578 2-35 (53)
273 PF10602 RPN7: 26S proteasome 84.4 10 0.00023 35.2 10.3 93 351-451 35-140 (177)
274 COG4976 Predicted methyltransf 84.3 2.2 4.7E-05 40.6 5.5 55 520-578 7-63 (287)
275 KOG3824 Huntingtin interacting 82.9 17 0.00037 36.2 11.1 55 520-578 128-184 (472)
276 KOG3783 Uncharacterized conser 82.6 78 0.0017 34.4 21.0 228 313-579 266-526 (546)
277 KOG3364 Membrane protein invol 82.5 7.7 0.00017 33.8 7.6 71 455-542 31-107 (149)
278 KOG0551 Hsp90 co-chaperone CNS 81.3 6.4 0.00014 39.7 7.7 77 335-419 96-180 (390)
279 KOG2053 Mitochondrial inherita 81.2 1.1E+02 0.0024 35.3 27.9 114 173-307 22-138 (932)
280 TIGR03504 FimV_Cterm FimV C-te 81.1 7.7 0.00017 26.6 5.8 32 428-459 3-34 (44)
281 KOG2041 WD40 repeat protein [G 79.9 1.1E+02 0.0024 34.4 20.7 58 108-172 679-736 (1189)
282 PF07721 TPR_4: Tetratricopept 79.8 2.2 4.7E-05 25.4 2.6 24 161-184 2-25 (26)
283 KOG4507 Uncharacterized conser 79.5 3.3 7.1E-05 44.6 5.4 100 430-549 613-719 (886)
284 KOG4507 Uncharacterized conser 79.2 7.4 0.00016 42.1 7.8 118 231-361 593-719 (886)
285 KOG0545 Aryl-hydrocarbon recep 79.0 23 0.00049 34.3 10.1 112 160-276 178-293 (329)
286 KOG0551 Hsp90 co-chaperone CNS 78.7 9.2 0.0002 38.6 7.8 87 285-384 87-181 (390)
287 COG3118 Thioredoxin domain-con 78.4 77 0.0017 31.8 16.8 113 405-537 147-265 (304)
288 PF10602 RPN7: 26S proteasome 76.8 26 0.00056 32.5 10.1 91 279-382 36-139 (177)
289 PF12862 Apc5: Anaphase-promot 76.2 10 0.00022 30.9 6.5 66 520-589 10-86 (94)
290 KOG2041 WD40 repeat protein [G 75.7 1.4E+02 0.0031 33.5 21.9 46 105-154 773-822 (1189)
291 KOG2610 Uncharacterized conser 75.6 99 0.0021 31.5 16.0 120 217-346 110-235 (491)
292 PF14853 Fis1_TPR_C: Fis1 C-te 75.4 4.7 0.0001 28.9 3.7 32 161-192 2-33 (53)
293 PF07721 TPR_4: Tetratricopept 75.2 4.5 9.7E-05 24.0 3.0 24 425-448 2-25 (26)
294 PF14561 TPR_20: Tetratricopep 70.8 36 0.00079 27.5 8.3 64 118-185 16-83 (90)
295 cd02680 MIT_calpain7_2 MIT: do 70.0 7.7 0.00017 30.1 4.0 34 407-453 2-35 (75)
296 PF02259 FAT: FAT domain; Int 69.5 1.4E+02 0.0031 30.7 26.2 63 277-348 144-212 (352)
297 PF07720 TPR_3: Tetratricopept 69.5 10 0.00023 24.7 3.9 28 161-188 2-31 (36)
298 COG3898 Uncharacterized membra 69.4 1.5E+02 0.0033 31.0 30.8 149 405-574 242-393 (531)
299 KOG4279 Serine/threonine prote 69.1 1E+02 0.0022 34.8 13.4 133 404-578 255-400 (1226)
300 PF12862 Apc5: Anaphase-promot 69.0 23 0.0005 28.8 7.0 51 141-191 11-72 (94)
301 cd02680 MIT_calpain7_2 MIT: do 68.7 8.5 0.00018 29.9 4.0 34 262-312 2-35 (75)
302 PF07720 TPR_3: Tetratricopept 67.9 15 0.00032 24.0 4.4 29 542-574 3-33 (36)
303 PF04910 Tcf25: Transcriptiona 67.6 1.7E+02 0.0036 30.8 18.4 65 105-191 7-71 (360)
304 KOG2610 Uncharacterized conser 65.4 1.7E+02 0.0036 30.0 13.7 143 405-571 116-274 (491)
305 PF04053 Coatomer_WDAD: Coatom 65.3 2.1E+02 0.0045 31.0 16.7 96 350-465 319-414 (443)
306 PF12968 DUF3856: Domain of Un 65.3 76 0.0017 27.1 9.0 28 426-453 102-129 (144)
307 PF10345 Cohesin_load: Cohesin 64.8 2.5E+02 0.0055 31.9 34.7 280 241-568 58-428 (608)
308 KOG0376 Serine-threonine phosp 64.7 8.6 0.00019 40.7 4.4 49 406-454 18-68 (476)
309 TIGR03504 FimV_Cterm FimV C-te 63.9 9.7 0.00021 26.1 3.1 26 163-188 2-27 (44)
310 COG2909 MalT ATP-dependent tra 63.3 2.9E+02 0.0064 32.2 20.5 49 141-189 471-526 (894)
311 PF10516 SHNi-TPR: SHNi-TPR; 63.3 13 0.00029 24.5 3.5 30 161-190 2-31 (38)
312 PF14561 TPR_20: Tetratricopep 62.7 14 0.0003 30.0 4.4 36 155-190 17-52 (90)
313 cd02681 MIT_calpain7_1 MIT: do 62.2 19 0.00042 28.0 4.9 32 409-453 4-35 (76)
314 KOG4814 Uncharacterized conser 62.0 46 0.00099 36.8 9.1 78 334-419 368-455 (872)
315 PF12968 DUF3856: Domain of Un 61.7 1E+02 0.0022 26.4 10.7 45 405-449 22-80 (144)
316 KOG4814 Uncharacterized conser 61.7 64 0.0014 35.7 10.1 78 369-450 367-454 (872)
317 PF04910 Tcf25: Transcriptiona 60.9 2.2E+02 0.0047 29.9 16.6 151 276-453 37-222 (360)
318 cd02683 MIT_1 MIT: domain cont 60.8 20 0.00044 28.0 4.8 33 408-453 3-35 (77)
319 cd02681 MIT_calpain7_1 MIT: do 60.2 12 0.00026 29.2 3.4 16 557-572 19-34 (76)
320 KOG1308 Hsp70-interacting prot 60.1 4.7 0.0001 40.8 1.4 86 369-458 127-216 (377)
321 PF04212 MIT: MIT (microtubule 59.2 26 0.00055 26.6 5.1 21 433-453 14-34 (69)
322 PF09613 HrpB1_HrpK: Bacterial 59.2 62 0.0013 29.3 8.2 68 106-177 24-95 (160)
323 KOG2114 Vacuolar assembly/sort 58.7 1.5E+02 0.0033 34.0 12.7 156 161-348 369-549 (933)
324 KOG0687 26S proteasome regulat 58.4 37 0.00079 34.3 7.1 96 241-349 103-210 (393)
325 PF10373 EST1_DNA_bind: Est1 D 57.5 31 0.00066 34.5 7.0 58 411-468 1-62 (278)
326 PF10373 EST1_DNA_bind: Est1 D 57.2 1E+02 0.0022 30.6 10.8 58 491-552 1-62 (278)
327 PHA02537 M terminase endonucle 56.9 1.9E+02 0.0042 28.0 12.3 31 556-586 190-220 (230)
328 KOG1839 Uncharacterized protei 56.4 70 0.0015 38.6 10.1 118 109-238 955-1085(1236)
329 PF10952 DUF2753: Protein of u 55.8 41 0.00089 28.8 6.0 29 163-191 4-32 (140)
330 PF10516 SHNi-TPR: SHNi-TPR; 55.7 25 0.00054 23.2 3.8 29 425-453 2-30 (38)
331 PF04190 DUF410: Protein of un 54.5 2E+02 0.0044 28.5 12.0 46 485-534 70-116 (260)
332 cd02682 MIT_AAA_Arch MIT: doma 54.0 33 0.00071 26.7 4.8 22 432-453 14-35 (75)
333 PF04781 DUF627: Protein of un 53.4 1E+02 0.0022 26.1 7.9 38 218-255 4-46 (111)
334 PF14852 Fis1_TPR_N: Fis1 N-te 52.6 42 0.00091 21.7 4.4 31 457-500 2-32 (35)
335 PF09205 DUF1955: Domain of un 52.0 1.7E+02 0.0036 25.8 10.5 58 405-462 99-158 (161)
336 KOG1308 Hsp70-interacting prot 51.0 7.7 0.00017 39.3 1.2 86 485-578 127-216 (377)
337 cd02683 MIT_1 MIT: domain cont 49.9 35 0.00077 26.7 4.6 16 175-190 2-17 (77)
338 KOG3783 Uncharacterized conser 49.1 4E+02 0.0086 29.3 18.1 230 157-422 264-521 (546)
339 cd02684 MIT_2 MIT: domain cont 48.2 30 0.00065 26.9 3.9 33 408-453 3-35 (75)
340 KOG0376 Serine-threonine phosp 47.1 17 0.00036 38.7 3.0 84 105-192 17-104 (476)
341 PF04212 MIT: MIT (microtubule 46.4 48 0.001 25.1 4.8 16 222-237 17-32 (69)
342 KOG0687 26S proteasome regulat 46.1 73 0.0016 32.3 7.0 95 279-384 104-209 (393)
343 KOG1914 mRNA cleavage and poly 46.1 4.5E+02 0.0097 29.0 34.0 66 119-189 15-82 (656)
344 KOG4279 Serine/threonine prote 45.2 1.4E+02 0.0031 33.8 9.6 70 257-326 253-331 (1226)
345 KOG1464 COP9 signalosome, subu 43.7 3.4E+02 0.0073 26.9 14.8 64 521-587 204-274 (440)
346 PF13041 PPR_2: PPR repeat fam 42.0 73 0.0016 22.0 4.9 29 426-454 5-33 (50)
347 cd02678 MIT_VPS4 MIT: domain c 41.7 36 0.00079 26.4 3.5 16 557-572 19-34 (75)
348 PF10952 DUF2753: Protein of u 41.6 98 0.0021 26.6 6.1 58 427-500 4-78 (140)
349 COG4976 Predicted methyltransf 41.2 34 0.00074 32.8 3.8 52 141-192 8-61 (287)
350 cd02684 MIT_2 MIT: domain cont 41.0 44 0.00095 26.0 3.9 33 262-311 2-34 (75)
351 cd02679 MIT_spastin MIT: domai 40.2 60 0.0013 25.5 4.5 34 406-452 3-36 (79)
352 PF10579 Rapsyn_N: Rapsyn N-te 39.8 99 0.0022 24.3 5.5 44 405-448 19-67 (80)
353 cd02678 MIT_VPS4 MIT: domain c 39.5 72 0.0016 24.7 4.9 20 434-453 16-35 (75)
354 COG3629 DnrI DNA-binding trans 39.4 4E+02 0.0087 26.8 11.2 81 105-189 134-216 (280)
355 PF12739 TRAPPC-Trs85: ER-Golg 39.1 5.1E+02 0.011 27.7 18.3 30 159-188 206-236 (414)
356 cd02682 MIT_AAA_Arch MIT: doma 39.0 49 0.0011 25.7 3.8 28 165-192 11-38 (75)
357 cd02677 MIT_SNX15 MIT: domain 38.2 48 0.001 25.8 3.6 32 409-453 4-35 (75)
358 PF01535 PPR: PPR repeat; Int 37.3 60 0.0013 19.3 3.5 27 428-454 4-30 (31)
359 PF12854 PPR_1: PPR repeat 36.8 74 0.0016 20.1 3.8 26 424-449 7-32 (34)
360 KOG1463 26S proteasome regulat 36.6 5E+02 0.011 26.8 13.9 183 165-400 133-330 (411)
361 smart00745 MIT Microtubule Int 36.5 84 0.0018 24.3 4.9 20 434-453 18-37 (77)
362 COG3629 DnrI DNA-binding trans 35.7 3E+02 0.0065 27.7 9.6 80 296-384 134-215 (280)
363 KOG0985 Vesicle coat protein c 35.3 8.7E+02 0.019 29.2 36.8 377 83-550 1102-1588(1666)
364 TIGR03778 VPDSG_CTERM VPDSG-CT 35.0 66 0.0014 19.2 2.9 21 626-646 5-25 (26)
365 KOG1839 Uncharacterized protei 34.7 3E+02 0.0065 33.5 10.8 119 217-349 939-1086(1236)
366 COG5159 RPN6 26S proteasome re 34.4 4.9E+02 0.011 26.1 25.6 46 503-551 282-327 (421)
367 PF09613 HrpB1_HrpK: Bacterial 34.1 3.6E+02 0.0079 24.5 14.3 65 520-588 22-88 (160)
368 KOG2114 Vacuolar assembly/sort 33.6 7.2E+02 0.016 29.0 12.9 27 427-453 371-397 (933)
369 cd02677 MIT_SNX15 MIT: domain 33.0 55 0.0012 25.5 3.2 31 525-572 4-34 (75)
370 cd02656 MIT MIT: domain contai 33.0 59 0.0013 25.1 3.5 16 557-572 19-34 (75)
371 COG2909 MalT ATP-dependent tra 32.4 8.9E+02 0.019 28.5 25.3 61 508-572 622-687 (894)
372 PRK13184 pknD serine/threonine 32.3 9.6E+02 0.021 28.8 25.9 307 216-569 481-896 (932)
373 COG5187 RPN7 26S proteasome re 32.3 4.4E+02 0.0096 26.5 9.8 108 336-451 98-219 (412)
374 TIGR00756 PPR pentatricopeptid 32.2 99 0.0022 18.7 4.0 27 428-454 4-30 (35)
375 KOG1497 COP9 signalosome, subu 32.0 2.4E+02 0.0053 28.7 8.1 87 461-567 108-207 (399)
376 cd02656 MIT MIT: domain contai 31.4 1.2E+02 0.0025 23.4 4.9 20 434-453 16-35 (75)
377 KOG0890 Protein kinase of the 30.8 3.7E+02 0.008 35.1 11.1 161 124-289 1670-1846(2382)
378 PF12753 Nro1: Nuclear pore co 30.7 80 0.0017 33.0 4.8 55 485-539 331-393 (404)
379 PF13041 PPR_2: PPR repeat fam 30.1 1E+02 0.0022 21.2 4.1 31 159-189 2-32 (50)
380 KOG3024 Uncharacterized conser 30.1 5.8E+02 0.013 25.6 13.5 30 276-309 124-153 (312)
381 PF12753 Nro1: Nuclear pore co 29.7 1.4E+02 0.0029 31.4 6.3 48 407-454 333-392 (404)
382 TIGR02561 HrpB1_HrpK type III 27.9 2.9E+02 0.0062 24.8 7.1 69 105-177 23-95 (153)
383 PF09670 Cas_Cas02710: CRISPR- 27.6 7.4E+02 0.016 26.2 11.7 51 296-349 144-198 (379)
384 PF04781 DUF627: Protein of un 27.4 3.8E+02 0.0083 22.7 11.0 43 527-573 63-107 (111)
385 PRK10941 hypothetical protein; 27.4 5.1E+02 0.011 25.9 9.8 66 507-580 184-251 (269)
386 cd02679 MIT_spastin MIT: domai 26.7 1E+02 0.0023 24.2 3.8 16 141-156 21-36 (79)
387 PF07589 VPEP: PEP-CTERM motif 26.2 1E+02 0.0022 18.2 2.8 18 627-644 6-23 (25)
388 KOG1538 Uncharacterized conser 25.9 1E+03 0.022 27.0 15.7 105 122-250 630-740 (1081)
389 PF10579 Rapsyn_N: Rapsyn N-te 25.7 3.4E+02 0.0073 21.4 6.9 57 427-496 9-67 (80)
390 PF04190 DUF410: Protein of un 25.6 6.7E+02 0.014 24.8 16.8 65 241-309 48-116 (260)
391 COG4259 Uncharacterized protei 24.9 1.7E+02 0.0038 24.1 4.7 42 263-308 53-97 (121)
392 PF05053 Menin: Menin; InterP 24.5 4.5E+02 0.0097 29.1 9.1 71 455-536 276-346 (618)
393 KOG2581 26S proteasome regulat 24.1 8.8E+02 0.019 25.8 11.8 126 391-535 128-274 (493)
394 PF13812 PPR_3: Pentatricopept 23.8 1.8E+02 0.0038 17.6 4.3 28 427-454 4-31 (34)
395 TIGR02561 HrpB1_HrpK type III 23.6 3.6E+02 0.0079 24.2 7.0 62 487-552 25-90 (153)
396 PRK10941 hypothetical protein; 23.0 3.8E+02 0.0083 26.7 8.0 59 391-453 184-244 (269)
397 COG4259 Uncharacterized protei 22.7 2.3E+02 0.0051 23.4 5.1 27 423-449 71-97 (121)
398 TIGR02595 PEP_exosort PEP-CTER 22.5 1.1E+02 0.0025 18.2 2.6 18 627-644 5-22 (26)
399 PF09205 DUF1955: Domain of un 22.1 5.5E+02 0.012 22.7 15.0 41 277-321 118-158 (161)
400 KOG3024 Uncharacterized conser 21.9 4.4E+02 0.0094 26.4 7.8 48 485-536 106-155 (312)
401 TIGR03042 PS_II_psbQ_bact phot 21.5 15 0.00033 32.4 -1.9 16 141-156 117-132 (142)
402 PF08311 Mad3_BUB1_I: Mad3/BUB 21.3 5.4E+02 0.012 22.2 8.4 41 410-450 81-125 (126)
403 KOG2063 Vacuolar assembly/sort 21.2 1.4E+03 0.031 27.1 14.5 244 216-546 510-776 (877)
404 KOG0276 Vesicle coat complex C 20.6 1.2E+03 0.027 26.2 12.0 149 64-272 597-746 (794)
405 smart00745 MIT Microtubule Int 20.6 1.3E+02 0.0027 23.3 3.3 16 141-156 21-36 (77)
406 PF11817 Foie-gras_1: Foie gra 20.5 4.8E+02 0.01 25.6 8.2 74 109-186 162-244 (247)
407 KOG1538 Uncharacterized conser 20.5 1.3E+03 0.028 26.3 19.2 45 405-450 786-830 (1081)
408 KOG1464 COP9 signalosome, subu 20.5 8.6E+02 0.019 24.2 17.2 103 426-537 147-260 (440)
409 PF08139 LPAM_1: Prokaryotic m 20.2 62 0.0014 19.2 1.1 18 1-18 1-18 (25)
No 1
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-36 Score=333.25 Aligned_cols=425 Identities=41% Similarity=0.592 Sum_probs=351.6
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhcCCc-ccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcc-----CCHHHHHH
Q 005877 108 MEEATSEVESAAMEGDPHARSVLGFLYGMGMM-RERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQ-----DMHDKAVK 181 (672)
Q Consensus 108 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~G~g-~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~~-----~~~~~A~~ 181 (672)
+..+...++.+...+++.++..++..+..|.+ +..+..++...|...+.+++..+.+.++..+... .+++.++.
T Consensus 107 ~~~~~~~~~~~~~sg~~~a~~~l~~~~~~~~~~~~~~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~ 186 (552)
T KOG1550|consen 107 IEFAVEEYELAAKSGNPKAHRNLGFKYLSGLSGVTSSQAKALVHYELSALGSNSPSSMRLGFSYLHGLGGVRRSEEKALS 186 (552)
T ss_pred ccccchhhhcccccCCHHHHHHHHHhhhhhcCCCCccHhhcchhhhccccCCCCcchhhhhhhhhccCCCccchhhHhhh
Confidence 36888889888999999999999999999987 8899999999999998889999999999999874 45777777
Q ss_pred -HHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 005877 182 -LYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLR 260 (672)
Q Consensus 182 -~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~ 260 (672)
.|+.+........... ..+.++.. .+...+ .+..
T Consensus 187 ~~~~~~~s~~~~~~~~~------------------------------------------~~~~~~~~--~~~~~~-~~~~ 221 (552)
T KOG1550|consen 187 KHYNKAASSTSSDATFS------------------------------------------LGPNAQRL--QLSLEG-EGNE 221 (552)
T ss_pred hhhhhccCccccccccC------------------------------------------CCcchhhh--hccccc-cCcc
Confidence 7766544221110000 01111111 222222 1222
Q ss_pred cC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHcC
Q 005877 261 RD----RTKALMWFSKAADKGEPQSMEFLGEIYARG-AGVERNYTKALEWLTHAAR-------QQLYSAYNGIGYLYVKG 328 (672)
Q Consensus 261 ~~----~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g-~g~~~~~~~A~~~~~~a~~-------~~~~~a~~~Lg~~y~~g 328 (672)
.+ ...|+++|+.+++.|+..+++.+|.+|..| .|+.+|.++|+.||+.+++ .+++.+++.+|.+|..|
T Consensus 222 ~~~~~~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 222 RNESGELSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQG 301 (552)
T ss_pred cccchhhhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcC
Confidence 22 566777777777777777777777777777 7777777777777777766 78899999999999998
Q ss_pred CCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCH
Q 005877 329 YGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNL 408 (672)
Q Consensus 329 ~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~ 408 (672)
.++..-|+++|+.+|.++++.+++++++.||.+|..|. ..+|..+|.+||..|++.|+..|+++++.||..|.|++.++
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~-~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGT-KERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCC-ccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCH
Confidence 87765589999999999999999999999999999986 45899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHh
Q 005877 409 HMATALYKLVAERGPWSSLSRWALESYLK-GDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAER 487 (672)
Q Consensus 409 ~~A~~~~~~a~~~~~~~a~~~lg~~~~~~-g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~ 487 (672)
.+|..||+++++.+++.+.+.++..+... +.+..+...+....+.|++.++.+.+++.+.... .+...+ ...+
T Consensus 381 ~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~---~~~~~~---~~~~ 454 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKGNPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEE---DLFSRG---VIST 454 (552)
T ss_pred HHHHHHHHHHHHccChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccc---cccccc---cccc
Confidence 99999999999999999888887765433 8999999999999999999999999999887421 111111 1447
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 005877 488 HQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYY 567 (672)
Q Consensus 488 ~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 567 (672)
...+...|.++..++++.+.+.||++|++|.|+.+|+.+|..+|.+|.+++ ++++++||+||++|.|+++ .+.|++||
T Consensus 455 ~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~-~~~~~nlg~~~e~g~g~~~-~~~a~~~~ 532 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG-AQALFNLGYMHEHGEGIKV-LHLAKRYY 532 (552)
T ss_pred hhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh-hHHHhhhhhHHhcCcCcch-hHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999 9999999999999999999 99999999
Q ss_pred HHHHhcCCCCcchhHHHHH
Q 005877 568 DQALEVDPAAKLPVTLALT 586 (672)
Q Consensus 568 ~~A~~~~~~~~~~~~~~~~ 586 (672)
+++.+.++++.+|+.+.+.
T Consensus 533 ~~~~~~~~~~~~~~~~~~~ 551 (552)
T KOG1550|consen 533 DQASEEDSRAYLPVKLALL 551 (552)
T ss_pred HHHHhcCchhhhHHHHHhh
Confidence 9999999999998877653
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=5.2e-34 Score=290.20 Aligned_cols=410 Identities=18% Similarity=0.153 Sum_probs=353.2
Q ss_pred hhhHHHHHHHHHH--HHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCHHHHH
Q 005877 105 VRVMEEATSEVES--AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAV 180 (672)
Q Consensus 105 ~~~~~~A~~~~~~--a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~~~~~~~A~ 180 (672)
.+||++|.+.... ..++.+.+....++.+|.+ .++.++....-..+++. .-.+++.++|.++...|+.+.|+
T Consensus 61 ~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q----~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al 136 (966)
T KOG4626|consen 61 GGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQ----GSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDAL 136 (966)
T ss_pred ccCHHHHHHHHhHhhccCCCcccceeeehhhhhc----ccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHH
Confidence 5889999998888 4556777888888888888 66777777777777764 44688889999999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCC
Q 005877 181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG--NAGAMYKIGLFYYFGLRG 258 (672)
Q Consensus 181 ~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~--~~~a~~~Lg~~y~~~~~~ 258 (672)
.+|+.++++.++. .++..+++..+...|+.+.|.+.|..+...+ ...+...+|.++-..
T Consensus 137 ~~y~~aiel~p~f----------------ida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~--- 197 (966)
T KOG4626|consen 137 ALYRAAIELKPKF----------------IDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAE--- 197 (966)
T ss_pred HHHHHHHhcCchh----------------hHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhh---
Confidence 9999998876542 2456678888999999999999999886654 678888999998776
Q ss_pred cccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcC
Q 005877 259 LRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKK 334 (672)
Q Consensus 259 ~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~ 334 (672)
+...+|...|.||++ +..+.++.+||-.+.. +|+...|+..|++|++. +.+.++.+||.+|.. .+
T Consensus 198 --Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~----~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke-----~~ 266 (966)
T KOG4626|consen 198 --GRLEEAKACYLKAIETQPCFAIAWSNLGCVFNA----QGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKE-----AR 266 (966)
T ss_pred --cccchhHHHHHHHHhhCCceeeeehhcchHHhh----cchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHH-----Hh
Confidence 489999999999987 4678889999999988 99999999999999875 488999999999975 45
Q ss_pred CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHH
Q 005877 335 NYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHM 410 (672)
Q Consensus 335 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~ 410 (672)
.++.|+.+|.+|+.. +++.++-|||.+|.. +|+.+-|+..|+++++ +..++|+.|||..+.. .|+..+
T Consensus 267 ~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYye----qG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd----~G~V~e 338 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNLRPNHAVAHGNLACIYYE----QGLLDLAIDTYKRALELQPNFPDAYNNLANALKD----KGSVTE 338 (966)
T ss_pred cchHHHHHHHHHHhcCCcchhhccceEEEEec----cccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh----ccchHH
Confidence 899999999999876 588999999999999 8999999999999977 4578999999999988 899999
Q ss_pred HHHHHHHHHHcC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchH
Q 005877 411 ATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAE 486 (672)
Q Consensus 411 A~~~~~~a~~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~ 486 (672)
|+.+|.+++... +++++++||.++.+.|.+++|...|+++++- +...+++|||.+|.. ++
T Consensus 339 a~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq----------------qg 402 (966)
T KOG4626|consen 339 AVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQ----------------QG 402 (966)
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHh----------------cc
Confidence 999999999887 5789999999999999999999999999765 578889999999988 88
Q ss_pred hHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHH
Q 005877 487 RHQCAHSLWWQASEQ--GNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHL 562 (672)
Q Consensus 487 ~~~~A~~~~~~a~~~--~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~ 562 (672)
++++|+..|+.++.- .-++++.|+|..|- .++|.+.|+++|.+|+.. --++|..|||.+|.. .|+..+
T Consensus 403 nl~~Ai~~YkealrI~P~fAda~~NmGnt~k----e~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kD----sGni~~ 474 (966)
T KOG4626|consen 403 NLDDAIMCYKEALRIKPTFADALSNMGNTYK----EMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKD----SGNIPE 474 (966)
T ss_pred cHHHHHHHHHHHHhcCchHHHHHHhcchHHH----HhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhc----cCCcHH
Confidence 999999999987554 45899999999999 899999999999999875 468899999999987 899999
Q ss_pred HHHHHHHHHhcCCCCcch
Q 005877 563 AKRYYDQALEVDPAAKLP 580 (672)
Q Consensus 563 A~~~~~~A~~~~~~~~~~ 580 (672)
|+.-|+.|+.++||..-.
T Consensus 475 AI~sY~~aLklkPDfpdA 492 (966)
T KOG4626|consen 475 AIQSYRTALKLKPDFPDA 492 (966)
T ss_pred HHHHHHHHHccCCCCchh
Confidence 999999999999987533
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-34 Score=290.68 Aligned_cols=422 Identities=17% Similarity=0.125 Sum_probs=365.1
Q ss_pred cccccCCCCCCcccccCC--CCCCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhC--CChHHHHHHHHHhhcC
Q 005877 62 MTEENLDPGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAME--GDPHARSVLGFLYGMG 137 (672)
Q Consensus 62 ~~~~~~~~~~a~~~~~~~--~~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~G 137 (672)
+....+||.+|++.-... -++.+.+.+..++..+.. -.++++..+.-..+... .-.+++.++|.+|..
T Consensus 57 ~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q-------~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke- 128 (966)
T KOG4626|consen 57 RLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQ-------GSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE- 128 (966)
T ss_pred HHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhc-------ccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH-
Confidence 345667888888655444 234444444444544442 35566776666665554 458899999999999
Q ss_pred CcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhh
Q 005877 138 MMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEEN 215 (672)
Q Consensus 138 ~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (672)
.++...|+.+|+.+++ +.+++++.+||.++..+|+.+.|...|.+++..+|..++ +..+
T Consensus 129 ---rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~c----------------a~s~ 189 (966)
T KOG4626|consen 129 ---RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYC----------------ARSD 189 (966)
T ss_pred ---hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhh----------------hhcc
Confidence 9999999999999997 688999999999999999999999999999998765443 2345
Q ss_pred hhHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 005877 216 KGALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYAR 291 (672)
Q Consensus 216 ~~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~ 291 (672)
+|.+...+|+..+|...|.++++. .-+-++.+||-++... ++...|+.+|++|++. ..+.|+++||.+|..
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~-----Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke 264 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQ-----GEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKE 264 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhc-----chHHHHHHHHHHhhcCCCcchHHHhhHHHHHHH
Confidence 888999999999999999999766 5788999999999877 4999999999999874 689999999999999
Q ss_pred CCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCC
Q 005877 292 GAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIG 367 (672)
Q Consensus 292 g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g 367 (672)
...++.|+..|.+|+.. +++.++.+||.+|.. +|+.+.|+..|+++++. ..++|+.|||..+..
T Consensus 265 ----~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYye-----qG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd--- 332 (966)
T KOG4626|consen 265 ----ARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYE-----QGLLDLAIDTYKRALELQPNFPDAYNNLANALKD--- 332 (966)
T ss_pred ----HhcchHHHHHHHHHHhcCCcchhhccceEEEEec-----cccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh---
Confidence 99999999999999865 588899999999974 88999999999999887 489999999999999
Q ss_pred chhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHH
Q 005877 368 VKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKA 443 (672)
Q Consensus 368 ~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A 443 (672)
.|+..+|..+|.+|+. ..++++++|||.+|.+ .+.++.|..+|+++++..| ..+..+||.+|-.+|++++|
T Consensus 333 -~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E----~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~A 407 (966)
T KOG4626|consen 333 -KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE----QGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDA 407 (966)
T ss_pred -ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHH
Confidence 8999999999999987 5699999999999999 9999999999999999886 56799999999999999999
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC--HHHHHHHHHHHHhCCC
Q 005877 444 FLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN--EHAALLIGDAYYYGRG 519 (672)
Q Consensus 444 ~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~lG~~y~~g~g 519 (672)
+..|++|+.. ....+++|+|..|.. .++...|+++|.+|+.-++ ++|..|||.+|.
T Consensus 408 i~~YkealrI~P~fAda~~NmGnt~ke----------------~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k---- 467 (966)
T KOG4626|consen 408 IMCYKEALRIKPTFADALSNMGNTYKE----------------MGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK---- 467 (966)
T ss_pred HHHHHHHHhcCchHHHHHHhcchHHHH----------------hhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh----
Confidence 9999999765 477889999999988 8899999999999988776 889999999999
Q ss_pred CCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHc
Q 005877 520 TQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEH 552 (672)
Q Consensus 520 ~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~ 552 (672)
..|+..+|+..|+.|++ ++.|+|.-||..++.-
T Consensus 468 DsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 468 DSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred ccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHH
Confidence 78999999999999987 4889999999887643
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=6.5e-27 Score=277.19 Aligned_cols=438 Identities=17% Similarity=0.145 Sum_probs=227.5
Q ss_pred ccCCCCCCcccccCCC--CCCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh----------------------
Q 005877 65 ENLDPGSWSPVFEPSI--DPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAM---------------------- 120 (672)
Q Consensus 65 ~~~~~~~a~~~~~~~~--~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~---------------------- 120 (672)
..+++++|...|+++. ++.++...+.++..++. .+++++|+..++++..
T Consensus 375 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 447 (899)
T TIGR02917 375 ALGDFEKAAEYLAKATELDPENAAARTQLGISKLS-------QGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQF 447 (899)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-------CCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCH
Confidence 3456666666666552 24444455555555442 3455555555555332
Q ss_pred --------------CCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 005877 121 --------------EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYA 184 (672)
Q Consensus 121 --------------~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~ 184 (672)
++++..+..+|.+|.. .+++++|+.+|+++.. +++..+++.+|.++...|++++|+.+|+
T Consensus 448 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 523 (899)
T TIGR02917 448 DKALAAAKKLEKKQPDNASLHNLLGAIYLG----KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFE 523 (899)
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHh----CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2344444555555544 4455555555555443 3444555555555555555555555555
Q ss_pred HHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccC
Q 005877 185 ELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRD 262 (672)
Q Consensus 185 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~ 262 (672)
++++..+.. ..+...++.++...|++++|+.+++++... ++....+.++.+|... ++
T Consensus 524 ~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~ 582 (899)
T TIGR02917 524 KVLTIDPKN----------------LRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGK-----GQ 582 (899)
T ss_pred HHHHhCcCc----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHC-----CC
Confidence 544432211 011223444455555555555555554332 3445555555555544 25
Q ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHH
Q 005877 263 RTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTK 338 (672)
Q Consensus 263 ~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~ 338 (672)
+++|+.+++++++ +.++.++..+|.+|.. .+++++|+..|+++++. .++.++..+|.+|.. .+++++
T Consensus 583 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~ 653 (899)
T TIGR02917 583 LKKALAILNEAADAAPDSPEAWLMLGRAQLA----AGDLNKAVSSFKKLLALQPDSALALLLLADAYAV-----MKNYAK 653 (899)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-----cCCHHH
Confidence 5555555555544 2345555555555555 55555555555555543 244555555555543 345555
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHH
Q 005877 339 AKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATAL 414 (672)
Q Consensus 339 A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~ 414 (672)
|+.+|+++++. ++..++..++.++.. .+++++|+..++...+. .++..+..+|.++.. .+++++|+.+
T Consensus 654 A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~ 725 (899)
T TIGR02917 654 AITSLKRALELKPDNTEAQIGLAQLLLA----AKRTESAKKIAKSLQKQHPKAALGFELEGDLYLR----QKDYPAAIQA 725 (899)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHH----CCCHHHHHHH
Confidence 55555555543 244555555555555 55555555555555442 234455555555554 5556666666
Q ss_pred HHHHHHcCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHH
Q 005877 415 YKLVAERGP-WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCA 491 (672)
Q Consensus 415 ~~~a~~~~~-~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A 491 (672)
|+++++..+ ......++..+...|++++|+..++++++. +++.+.+++|.++.. .++.++|
T Consensus 726 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----------------~g~~~~A 789 (899)
T TIGR02917 726 YRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLA----------------QKDYDKA 789 (899)
T ss_pred HHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----------------CcCHHHH
Confidence 666555542 234455555555566666666666555433 345555555555554 4455666
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 005877 492 HSLWWQASEQ--GNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYY 567 (672)
Q Consensus 492 ~~~~~~a~~~--~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 567 (672)
+.+|+++++. .++.++.++|+++. ..++ .+|+.+++++++. +++..+.++|.++.. .+++++|+++|
T Consensus 790 ~~~~~~~~~~~p~~~~~~~~l~~~~~----~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~ 860 (899)
T TIGR02917 790 IKHYRTVVKKAPDNAVVLNNLAWLYL----ELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE----KGEADRALPLL 860 (899)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH----hcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH----cCCHHHHHHHH
Confidence 6666654333 33555556666665 4445 5566666665442 455555666666554 55666666666
Q ss_pred HHHHhcCCC
Q 005877 568 DQALEVDPA 576 (672)
Q Consensus 568 ~~A~~~~~~ 576 (672)
+++++.+|.
T Consensus 861 ~~a~~~~~~ 869 (899)
T TIGR02917 861 RKAVNIAPE 869 (899)
T ss_pred HHHHhhCCC
Confidence 666666554
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=5.1e-27 Score=278.08 Aligned_cols=432 Identities=18% Similarity=0.114 Sum_probs=369.6
Q ss_pred CCCCCCcccccCCC--CCCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccC
Q 005877 67 LDPGSWSPVFEPSI--DPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRER 142 (672)
Q Consensus 67 ~~~~~a~~~~~~~~--~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~ 142 (672)
+++++|...+++.. .++++...+.+|..+.. .+++++|+..|+++. +++++.+.+.+|.++.. .+
T Consensus 445 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g 513 (899)
T TIGR02917 445 GQFDKALAAAKKLEKKQPDNASLHNLLGAIYLG-------KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQ----EG 513 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHh-------CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----CC
Confidence 34444444444442 24455566666666553 589999999999954 56889999999999998 89
Q ss_pred CHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhh
Q 005877 143 NKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALR 220 (672)
Q Consensus 143 d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 220 (672)
++++|..+|++++. +++..++..++.++...|++++|+.+++++++..+... .....++..+
T Consensus 514 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------~~~~~l~~~~ 577 (899)
T TIGR02917 514 NPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEI----------------EPALALAQYY 577 (899)
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch----------------hHHHHHHHHH
Confidence 99999999999976 67899999999999999999999999999987643221 2234578889
Q ss_pred hccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCc
Q 005877 221 KSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVE 296 (672)
Q Consensus 221 ~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~ 296 (672)
...|++++|+..++++.+. .++.++..+|.+|... +++++|+.+|+++++ +.++.++..+|.+|.. .
T Consensus 578 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 648 (899)
T TIGR02917 578 LGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAA-----GDLNKAVSSFKKLLALQPDSALALLLLADAYAV----M 648 (899)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----c
Confidence 9999999999999998765 5899999999999988 499999999999987 4678999999999999 9
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcH
Q 005877 297 RNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDV 372 (672)
Q Consensus 297 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~ 372 (672)
+++++|+.+|+++++. ++..++..++.++.. .+++++|+.++++..+. .++..+..+|.++.. .+++
T Consensus 649 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~ 719 (899)
T TIGR02917 649 KNYAKAITSLKRALELKPDNTEAQIGLAQLLLA-----AKRTESAKKIAKSLQKQHPKAALGFELEGDLYLR----QKDY 719 (899)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHH----CCCH
Confidence 9999999999999875 478899999999986 57999999999999876 477888999999999 8999
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005877 373 KLACKYFLVAANAG-HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSR 449 (672)
Q Consensus 373 ~~A~~~~~~A~~~~-~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~ 449 (672)
++|+.+|+++++.. ......+++.++.. .+++++|+..++++++..| +.++..+|..+...|++++|+.+|++
T Consensus 720 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 795 (899)
T TIGR02917 720 PAAIQAYRKALKRAPSSQNAIKLHRALLA----SGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRT 795 (899)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 99999999998754 34778889999987 8999999999999998874 56788999999999999999999999
Q ss_pred HHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhCCCCCCCHH
Q 005877 450 MAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE--QGNEHAALLIGDAYYYGRGTQRDYE 525 (672)
Q Consensus 450 a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lG~~y~~g~g~~~d~~ 525 (672)
+++. .++.++.++++++.. .++ .+|+.+++++.+ ++++..+.++|.++. ..++++
T Consensus 796 ~~~~~p~~~~~~~~l~~~~~~----------------~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~ 854 (899)
T TIGR02917 796 VVKKAPDNAVVLNNLAWLYLE----------------LKD-PRALEYAEKALKLAPNIPAILDTLGWLLV----EKGEAD 854 (899)
T ss_pred HHHhCCCCHHHHHHHHHHHHh----------------cCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHH----HcCCHH
Confidence 9766 478889999999987 556 779999998755 467888899999999 899999
Q ss_pred HHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Q 005877 526 RAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALE 572 (672)
Q Consensus 526 ~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 572 (672)
+|+.+|+++++. .++.+.++++.+|.. .|+.++|++.++++++
T Consensus 855 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 855 RALPLLRKAVNIAPEAAAIRYHLALALLA----TGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHhC
Confidence 999999999874 689999999999988 8999999999999863
No 6
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=9.4e-28 Score=263.18 Aligned_cols=413 Identities=28% Similarity=0.342 Sum_probs=345.2
Q ss_pred CCCCcccccCCCCCCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCc-ccCCHHHH
Q 005877 69 PGSWSPVFEPSIDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMM-RERNKGKA 147 (672)
Q Consensus 69 ~~~a~~~~~~~~~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~G~g-~~~d~~~A 147 (672)
...+...++.+.+.+++.+...++..+...- .+...+..++...|.....+++......++..|..|.+ +..+.+.|
T Consensus 107 ~~~~~~~~~~~~~sg~~~a~~~l~~~~~~~~--~~~~~~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a 184 (552)
T KOG1550|consen 107 IEFAVEEYELAAKSGNPKAHRNLGFKYLSGL--SGVTSSQAKALVHYELSALGSNSPSSMRLGFSYLHGLGGVRRSEEKA 184 (552)
T ss_pred ccccchhhhcccccCCHHHHHHHHHhhhhhc--CCCCccHhhcchhhhccccCCCCcchhhhhhhhhccCCCccchhhHh
Confidence 3456666777777778888888888877431 22567888999999999888999999999999999987 89999999
Q ss_pred HH-HHHHHHhCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCCh
Q 005877 148 FL-YHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGED 226 (672)
Q Consensus 148 ~~-~~~~A~~~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~ 226 (672)
.. .+..++..........+|..-... ... ..+.+......++.
T Consensus 185 ~~~~~~~~~s~~~~~~~~~~~~~~~~~-----------~~~-------------------------~~~~~~~~~~~~~~ 228 (552)
T KOG1550|consen 185 LSKHYNKAASSTSSDATFSLGPNAQRL-----------QLS-------------------------LEGEGNERNESGEL 228 (552)
T ss_pred hhhhhhhccCccccccccCCCcchhhh-----------hcc-------------------------ccccCcccccchhh
Confidence 99 999998877666665555211110 000 00011111122356
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHcCCCCcC-C
Q 005877 227 DEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD-------KGEPQSMEFLGEIYARGAGVER-N 298 (672)
Q Consensus 227 ~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~-------~~~~~a~~~Lg~~y~~g~g~~~-~ 298 (672)
.+|+.+++.+++.|+..+++.+|.+|+.|..|+.+|.++|+.||+.+++ .+++.+++.+|.+|..|.++.. |
T Consensus 229 ~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d 308 (552)
T KOG1550|consen 229 SEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKID 308 (552)
T ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcccc
Confidence 7899999999999999999999999999988999999999999999998 7899999999999999999888 9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHH
Q 005877 299 YTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKY 378 (672)
Q Consensus 299 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 378 (672)
+++|+.+|.++++.+++.+++.||.+|..|. ..+ |+.+|.+||..|++.|+..|+++++.||..|.|+..+..+|..|
T Consensus 309 ~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~-~~~-d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~ 386 (552)
T KOG1550|consen 309 YEKALKLYTKAAELGNPDAQYLLGVLYETGT-KER-DYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAY 386 (552)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHcCC-ccc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHH
Confidence 9999999999999999999999999999986 234 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc----------CCHHHHHHHHH
Q 005877 379 FLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLK----------GDVGKAFLLYS 448 (672)
Q Consensus 379 ~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~----------g~~~~A~~~~~ 448 (672)
|+++++.+++.+.+.++.+++.|. +..+.+...+....+.+...+..+...+.... .+.+.++..+.
T Consensus 387 ~k~aA~~g~~~A~~~~~~~~~~g~---~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (552)
T KOG1550|consen 387 YKKAAEKGNPSAAYLLGAFYEYGV---GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYS 463 (552)
T ss_pred HHHHHHccChhhHHHHHHHHHHcc---ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHH
Confidence 999999999999999999999975 77777777777777777655544443332222 26789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHH
Q 005877 449 RMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAA 528 (672)
Q Consensus 449 ~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~ 528 (672)
++..+|+..+...++.+|... .....++++|..+|.++.+++ +.++++||++|..|.|.++ +..|.
T Consensus 464 ~a~~~g~~~a~~~lgd~y~~g------------~g~~~d~~~a~~~y~~a~~~~-~~~~~nlg~~~e~g~g~~~-~~~a~ 529 (552)
T KOG1550|consen 464 RAAAQGNADAILKLGDYYYYG------------LGTGRDPEKAAAQYARASEQG-AQALFNLGYMHEHGEGIKV-LHLAK 529 (552)
T ss_pred HHHhccCHHHHhhhcceeeec------------CCCCCChHHHHHHHHHHHHhh-hHHHhhhhhHHhcCcCcch-hHHHH
Confidence 999999999999999988652 112557999999999999999 9999999999999999999 99999
Q ss_pred HHHHHHHhcC
Q 005877 529 EAYMHARSQS 538 (672)
Q Consensus 529 ~~~~~A~~~~ 538 (672)
++|.++.+.+
T Consensus 530 ~~~~~~~~~~ 539 (552)
T KOG1550|consen 530 RYYDQASEED 539 (552)
T ss_pred HHHHHHHhcC
Confidence 9999998854
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=5.7e-25 Score=263.82 Aligned_cols=328 Identities=18% Similarity=0.179 Sum_probs=215.5
Q ss_pred hHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcC--CHH------------
Q 005877 217 GALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG--EPQ------------ 280 (672)
Q Consensus 217 ~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~--~~~------------ 280 (672)
+..+...|++++|+..|+++... +++.+++.||.+|... +++++|+.+|+++++.. ++.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~-----g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQ-----GDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 44455566666666666665443 4666666666666665 36666666666666531 111
Q ss_pred --HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHH
Q 005877 281 --SMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGG 354 (672)
Q Consensus 281 --a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a 354 (672)
....+|.++.. .+++++|+..|+++++. +++.++..||.+|.. .|++++|+.+|+++++. +++.+
T Consensus 351 ~~~~~~~g~~~~~----~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~-----~g~~~eA~~~y~~aL~~~p~~~~a 421 (1157)
T PRK11447 351 YWLLIQQGDAALK----ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMA-----RKDYAAAERYYQQALRMDPGNTNA 421 (1157)
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHhCCCCHHH
Confidence 11234555555 66666666666666654 355666666666664 45666666666666654 35566
Q ss_pred HHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC
Q 005877 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANAG-----------HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP 423 (672)
Q Consensus 355 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----------~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 423 (672)
+..++.+|.. ++.++|+.++++..... ....+..+|.++.. .+++++|+.+|+++++..|
T Consensus 422 ~~~L~~l~~~-----~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~----~g~~~eA~~~~~~Al~~~P 492 (1157)
T PRK11447 422 VRGLANLYRQ-----QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN----QGKWAQAAELQRQRLALDP 492 (1157)
T ss_pred HHHHHHHHHh-----cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCC
Confidence 6666666643 24556665554321110 11233445566655 7899999999999998875
Q ss_pred --hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCC-----c-ccCC---------------
Q 005877 424 --WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGS-----M-CMGE--------------- 478 (672)
Q Consensus 424 --~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~-----~-~~~~--------------- 478 (672)
+.+++.+|.++...|++++|+..++++++. +++.+.+.++.++...+... + .+..
T Consensus 493 ~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~ 572 (1157)
T PRK11447 493 GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQ 572 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHh
Confidence 456788999999999999999999999664 57777777776654422100 0 0000
Q ss_pred -------CCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHH
Q 005877 479 -------SGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYM 549 (672)
Q Consensus 479 -------~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~ 549 (672)
.......++.++|+.+++ ..+.++..++.+|.+|. ..+++++|+.+|+++++ ++++.++.+||.+
T Consensus 573 ~~~~l~~a~~l~~~G~~~eA~~~l~--~~p~~~~~~~~La~~~~----~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~ 646 (1157)
T PRK11447 573 SDQVLETANRLRDSGKEAEAEALLR--QQPPSTRIDLTLADWAQ----QRGDYAAARAAYQRVLTREPGNADARLGLIEV 646 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHH--hCCCCchHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 000011234555555555 35677888899999999 88999999999999976 4789999999999
Q ss_pred HHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877 550 HEHGQGLPLDLHLAKRYYDQALEVDPAA 577 (672)
Q Consensus 550 y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 577 (672)
|.. .+++++|++.++++++..|+.
T Consensus 647 ~~~----~g~~~eA~~~l~~ll~~~p~~ 670 (1157)
T PRK11447 647 DIA----QGDLAAARAQLAKLPATANDS 670 (1157)
T ss_pred HHH----CCCHHHHHHHHHHHhccCCCC
Confidence 987 789999999999999887764
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.95 E-value=3.1e-24 Score=242.08 Aligned_cols=416 Identities=13% Similarity=0.002 Sum_probs=295.2
Q ss_pred chHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhC-CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHH
Q 005877 87 GSYYITISKMMSAVTNGDVRVMEEATSEVESAAME-GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSK 163 (672)
Q Consensus 87 a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~ 163 (672)
.+..+|..++. .+++++|+..|++++.. .++..+.++|.+|.. .+++++|+..++++++ +++..++
T Consensus 129 ~~k~~G~~~~~-------~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~----l~~~~~Ai~~~~~al~l~p~~~~a~ 197 (615)
T TIGR00990 129 KLKEKGNKAYR-------NKDFNKAIKLYSKAIECKPDPVYYSNRAACHNA----LGDWEKVVEDTTAALELDPDYSKAL 197 (615)
T ss_pred HHHHHHHHHHH-------cCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----hCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 34556666553 68999999999997654 457888999999998 8999999999999987 5788999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHc--CC
Q 005877 164 MAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK--GN 241 (672)
Q Consensus 164 ~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~--~~ 241 (672)
+.+|.+|...|++++|+..|..+....+... . ...... ...-...+........+. .+
T Consensus 198 ~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~---------~----------~~~~~~-~~~l~~~a~~~~~~~l~~~~~~ 257 (615)
T TIGR00990 198 NRRANAYDGLGKYADALLDLTASCIIDGFRN---------E----------QSAQAV-ERLLKKFAESKAKEILETKPEN 257 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc---------H----------HHHHHH-HHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999977654321000 0 000000 000001222222222222 23
Q ss_pred HHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-----C
Q 005877 242 AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-----L 314 (672)
Q Consensus 242 ~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~ 314 (672)
..+...+|..+... ....+..-+....+ .....++..+|..+... ...+++++|+.+|+++++.+ .
T Consensus 258 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~-~~~~~y~~A~~~~~~al~~~~~~~~~ 330 (615)
T TIGR00990 258 LPSVTFVGNYLQSF------RPKPRPAGLEDSNELDEETGNGQLQLGLKSPES-KADESYEEAARAFEKALDLGKLGEKE 330 (615)
T ss_pred CCCHHHHHHHHHHc------cCCcchhhhhcccccccccccchHHHHHHHHHh-hhhhhHHHHHHHHHHHHhcCCCChhh
Confidence 33444555544221 11111122222222 12233445555443221 12568889999999988753 4
Q ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHH
Q 005877 315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKA 390 (672)
Q Consensus 315 ~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a 390 (672)
..++..+|.++.. .|++++|+.+|+++++. +++.+++.+|.++.. .+++++|+..|+++++. .++.+
T Consensus 331 a~a~~~lg~~~~~-----~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~ 401 (615)
T TIGR00990 331 AIALNLRGTFKCL-----KGKHLEALADLSKSIELDPRVTQSYIKRASMNLE----LGDPDKAEEDFDKALKLNSEDPDI 401 (615)
T ss_pred HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHH
Confidence 5678888888875 56899999999998876 367788899998888 88999999999988774 46888
Q ss_pred HHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 005877 391 FYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWIL 466 (672)
Q Consensus 391 ~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l 466 (672)
++.+|.++.. .+++++|+.+|+++++..| ..++..+|.+++..|++++|+..|+++++. .++.+++++|.++
T Consensus 402 ~~~lg~~~~~----~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~ 477 (615)
T TIGR00990 402 YYHRAQLHFI----KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELL 477 (615)
T ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 8999988887 8899999999999988875 456778888999999999999999998664 4678888888888
Q ss_pred HHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC--HH------HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-
Q 005877 467 DKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN--EH------AALLIGDAYYYGRGTQRDYERAAEAYMHARSQ- 537 (672)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~------a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~- 537 (672)
.. .+++++|+..|+++++..+ .. .+++.+..++. ..+++++|+.+++++++.
T Consensus 478 ~~----------------~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~---~~~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 478 LD----------------QNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ---WKQDFIEAENLCEKALIID 538 (615)
T ss_pred HH----------------ccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHhcC
Confidence 77 6788999999998776542 11 22333334441 468999999999999764
Q ss_pred -CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877 538 -SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA 576 (672)
Q Consensus 538 -~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 576 (672)
++..++..||.+|.. .|++++|+++|++|+++.+.
T Consensus 539 p~~~~a~~~la~~~~~----~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 539 PECDIAVATMAQLLLQ----QGDVDEALKLFERAAELART 574 (615)
T ss_pred CCcHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHhcc
Confidence 677889999999987 89999999999999998764
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=3.9e-24 Score=256.63 Aligned_cols=399 Identities=14% Similarity=0.082 Sum_probs=325.0
Q ss_pred hhhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHH--------------HHHHH
Q 005877 105 VRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQ--------------SKMAV 166 (672)
Q Consensus 105 ~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~--------------a~~~L 166 (672)
.+++++|+..|+++. +++++++++.||.+|.. .+++++|+.+|+++++ +++.. ....+
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~----~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQ----QGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 588999999999954 46889999999999998 8999999999999987 33321 22456
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHH--cCCHHH
Q 005877 167 AYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ--KGNAGA 244 (672)
Q Consensus 167 g~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~--~~~~~a 244 (672)
|.++...|++++|+..|+++++..|... .+...++.++..+|++++|++.|+++.+ +++..+
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~----------------~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a 421 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNTDS----------------YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNA 421 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 8888899999999999999998754321 2345689999999999999999999865 468889
Q ss_pred HHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-
Q 005877 245 MYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-----------GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ- 312 (672)
Q Consensus 245 ~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~- 312 (672)
+..++.+|..+ ++++|+.++++.... -....+..+|.++.. .+++++|+.+|+++++.
T Consensus 422 ~~~L~~l~~~~------~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~----~g~~~eA~~~~~~Al~~~ 491 (1157)
T PRK11447 422 VRGLANLYRQQ------SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN----QGKWAQAAELQRQRLALD 491 (1157)
T ss_pred HHHHHHHHHhc------CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH----CCCHHHHHHHHHHHHHhC
Confidence 99999998654 789999888764321 113456678899988 89999999999999875
Q ss_pred -CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCC--
Q 005877 313 -QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGH-- 387 (672)
Q Consensus 313 -~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~-- 387 (672)
+++.+++.+|.+|.. .|++++|+..|+++++. +++.+++.+|..+.. .++.++|+.+++++.....
T Consensus 492 P~~~~~~~~LA~~~~~-----~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~----~~~~~~Al~~l~~l~~~~~~~ 562 (1157)
T PRK11447 492 PGSVWLTYRLAQDLRQ-----AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSG----SDRDRAALAHLNTLPRAQWNS 562 (1157)
T ss_pred CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHhCCchhcCh
Confidence 578899999999986 67999999999999875 588999999988877 8899999999987533211
Q ss_pred ----------HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCC
Q 005877 388 ----------QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAE--LGY 455 (672)
Q Consensus 388 ----------~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~g~ 455 (672)
......++..+.. .++.++|+.+++. ...++.....+|..+...|++++|+..|+++++ +++
T Consensus 563 ~~~~l~~~l~~~~~l~~a~~l~~----~G~~~eA~~~l~~--~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~ 636 (1157)
T PRK11447 563 NIQELAQRLQSDQVLETANRLRD----SGKEAEAEALLRQ--QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGN 636 (1157)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHH----CCCHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 1223456666766 8899999999882 233566788999999999999999999999975 468
Q ss_pred HHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 005877 456 EVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ--GNEHAALLIGDAYYYGRGTQRDYERAAEAYMH 533 (672)
Q Consensus 456 ~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~ 533 (672)
+.++.+++.+|.. .+++++|+..++++.+. +++.++..+|.++. ..+++++|+++|++
T Consensus 637 ~~a~~~la~~~~~----------------~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~----~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 637 ADARLGLIEVDIA----------------QGDLAAARAQLAKLPATANDSLNTQRRVALAWA----ALGDTAAAQRTFNR 696 (1157)
T ss_pred HHHHHHHHHHHHH----------------CCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH----hCCCHHHHHHHHHH
Confidence 9999999999988 77899999999987654 67888999999999 88999999999999
Q ss_pred HHhcC--------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Q 005877 534 ARSQS--------NAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALE 572 (672)
Q Consensus 534 A~~~~--------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 572 (672)
+++.. ++..+..+|.++.. .|+.++|+.+|++|+.
T Consensus 697 al~~~~~~~~~~~~a~~~~~~a~~~~~----~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 697 LIPQAKSQPPSMESALVLRDAARFEAQ----TGQPQQALETYKDAMV 739 (1157)
T ss_pred HhhhCccCCcchhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence 98742 22456677999887 8999999999999986
No 10
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.94 E-value=9.2e-23 Score=219.40 Aligned_cols=476 Identities=16% Similarity=0.132 Sum_probs=364.9
Q ss_pred ccccCCCCCCcccccCC--CCCCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHH--HhCCChHHHHHHHHHhhcCC
Q 005877 63 TEENLDPGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGM 138 (672)
Q Consensus 63 ~~~~~~~~~a~~~~~~~--~~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a--~~~~~~~a~~~Lg~~y~~G~ 138 (672)
....++.+.|+..|+++ ++|.+.+++..+|...+.. .+...+..++..+.++ .++.||.+...|+..|..
T Consensus 209 f~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~----~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf-- 282 (1018)
T KOG2002|consen 209 FWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNF----NDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYF-- 282 (1018)
T ss_pred HHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHc----cchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh--
Confidence 34445566677667666 5566777777777766643 4567889999999995 456889999999999988
Q ss_pred cccCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCch
Q 005877 139 MRERNKGKAFLYHHFAAEGG-----NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAE 213 (672)
Q Consensus 139 g~~~d~~~A~~~~~~A~~~~-----~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 213 (672)
.+|+..+..+..-++... ..++++.+|..|..+||+++|..||.+++..++..+.. +.
T Consensus 283 --K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l---------------~~ 345 (1018)
T KOG2002|consen 283 --KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL---------------PL 345 (1018)
T ss_pred --cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc---------------cc
Confidence 899999999998887642 34778999999999999999999999988765443211 23
Q ss_pred hhhhHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 005877 214 ENKGALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIY 289 (672)
Q Consensus 214 ~~~~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y 289 (672)
..+|.++...|+.+.++.+|++.... ++.+.+..||.+|.... ..+...++|..+..++.+. .+..++..++.+|
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~-~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA-KKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh-hhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 45788999999999999999997554 79999999999997652 2233568899999998875 5889999999999
Q ss_pred HcCCCCcCCHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC----CCH------
Q 005877 290 ARGAGVERNYTKALEWLTHAARQ-------QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EEA------ 352 (672)
Q Consensus 290 ~~g~g~~~~~~~A~~~~~~a~~~-------~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----~~~------ 352 (672)
. .+|...++..|.+|++. -.++.++++|..++. .|++.+|...|.+|... .+.
T Consensus 425 e-----~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~-----~g~~~~A~~~f~~A~~~~~~~~n~de~~~~ 494 (1018)
T KOG2002|consen 425 E-----QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFR-----LGNIEKALEHFKSALGKLLEVANKDEGKST 494 (1018)
T ss_pred H-----hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH-----hcChHHHHHHHHHHhhhhhhhcCccccccc
Confidence 8 47777788888888742 267889999999986 57999999999998654 222
Q ss_pred --HHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC--ChhH
Q 005877 353 --GGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSS 426 (672)
Q Consensus 353 --~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a 426 (672)
...||||.++.. ..+++.|.+.|+..++ ++..+++.+||.+-.. +.+..+|..+++.+++.+ ++++
T Consensus 495 ~lt~~YNlarl~E~----l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~----k~~~~ea~~~lk~~l~~d~~np~a 566 (1018)
T KOG2002|consen 495 NLTLKYNLARLLEE----LHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARD----KNNLYEASLLLKDALNIDSSNPNA 566 (1018)
T ss_pred hhHHHHHHHHHHHh----hhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHh----ccCcHHHHHHHHHHHhcccCCcHH
Confidence 247999999998 8999999999999887 5678899999866665 789999999999998876 6888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC
Q 005877 427 LSRWALESYLKGDVGKAFLLYSRMAEL----GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (672)
Q Consensus 427 ~~~lg~~~~~~g~~~~A~~~~~~a~~~----g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (672)
...+|..+..+.++..|-.-|+..++. .+.-+...||.++..... -.........+.+++|+++|.+++..+
T Consensus 567 rsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~----~~~rn~ek~kk~~~KAlq~y~kvL~~d 642 (1018)
T KOG2002|consen 567 RSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH----NPSRNPEKEKKHQEKALQLYGKVLRND 642 (1018)
T ss_pred HHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc----ccccChHHHHHHHHHHHHHHHHHHhcC
Confidence 889999888888888888877776544 345556666665544111 011111233567899999999887776
Q ss_pred C--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhc-CCCC
Q 005877 503 N--EHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEV-DPAA 577 (672)
Q Consensus 503 ~--~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~ 577 (672)
+ .-|-+-+|.++. ..+++..|+..|.+..+. ..+..+.|||.+|.. .|++..|++.|+.++.. .+..
T Consensus 643 pkN~yAANGIgiVLA----~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e----~~qy~~AIqmYe~~lkkf~~~~ 714 (1018)
T KOG2002|consen 643 PKNMYAANGIGIVLA----EKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVE----QGQYRLAIQMYENCLKKFYKKN 714 (1018)
T ss_pred cchhhhccchhhhhh----hccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHH----HHHHHHHHHHHHHHHHHhcccC
Confidence 5 445568888888 788999999999887664 467888899998876 78899999999998876 4444
Q ss_pred cchhHHHHHHHHHHH
Q 005877 578 KLPVTLALTSLWIRK 592 (672)
Q Consensus 578 ~~~~~~~~~~~~~~~ 592 (672)
...+..-|++.|.+.
T Consensus 715 ~~~vl~~Lara~y~~ 729 (1018)
T KOG2002|consen 715 RSEVLHYLARAWYEA 729 (1018)
T ss_pred CHHHHHHHHHHHHHh
Confidence 455555566666654
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=1.5e-22 Score=232.80 Aligned_cols=454 Identities=13% Similarity=0.036 Sum_probs=290.7
Q ss_pred cCCCCccccccCCCCCCcccccCC--CCCCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh--CCChHHHHHHH
Q 005877 56 FGDSESMTEENLDPGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAM--EGDPHARSVLG 131 (672)
Q Consensus 56 ~~~~~~~~~~~~~~~~a~~~~~~~--~~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg 131 (672)
++..+......+++.+|+..|+++ ++|+++.+.+.++..++. .|++++|+.++++++. ++|...+..|+
T Consensus 47 ~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~-------~g~~~~A~~~~~kAv~ldP~n~~~~~~La 119 (987)
T PRK09782 47 RLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRH-------FGHDDRARLLLEDQLKRHPGDARLERSLA 119 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 344455566668888888888888 567777778777777774 5788888888888554 46666666665
Q ss_pred HHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHH--------HhccCCHHHHHHHHHHHHHHHHhhhhccCCCC
Q 005877 132 FLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYT--------YLRQDMHDKAVKLYAELAEIAVNSFLISKDSP 201 (672)
Q Consensus 132 ~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~--------y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~ 201 (672)
.+ +++++|+..|++.+. +++.++++.++.. |.+.+...++++ .+.... .|
T Consensus 120 ~i--------~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~----------~~ 179 (987)
T PRK09782 120 AI--------PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAA----------SP 179 (987)
T ss_pred Hh--------ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCC----------CC
Confidence 55 477888888888776 6888888888887 666655555555 222110 00
Q ss_pred cccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHhc-CC--------C------------
Q 005877 202 VIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG--NAGAMYKIGLFYYFG-LR--------G------------ 258 (672)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~--~~~a~~~Lg~~y~~~-~~--------~------------ 258 (672)
....+ ...+..+|..++++++|++.++++.+.+ +......|+.+|... +. .
T Consensus 180 ~~~vL------~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~al 253 (987)
T PRK09782 180 EGKTL------RTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITY 253 (987)
T ss_pred CcHHH------HHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHH
Confidence 11111 1124666777777777777777776653 566666666666652 10 0
Q ss_pred -----cccCHHHHHHHHHHH--HH--------------------------------------------------------
Q 005877 259 -----LRRDRTKALMWFSKA--AD-------------------------------------------------------- 275 (672)
Q Consensus 259 -----~~~~~~~A~~~~~~a--~~-------------------------------------------------------- 275 (672)
-.++.++|.+++++- +.
T Consensus 254 a~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (987)
T PRK09782 254 ATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQ 333 (987)
T ss_pred HHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 012444444444430 00
Q ss_pred ---------------------------------------cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH-cC--
Q 005877 276 ---------------------------------------KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR-QQ-- 313 (672)
Q Consensus 276 ---------------------------------------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~-- 313 (672)
++++.+...++..... .|+.++|..+|+++.. .+
T Consensus 334 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 409 (987)
T PRK09782 334 KLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQ----NGQSREAADLLLQRYPFQGDA 409 (987)
T ss_pred HHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cccHHHHHHHHHHhcCCCccc
Confidence 0011111111111111 4566666666666654 11
Q ss_pred --CHHHHHHHHHHHHcCCCC----------------------------------------------------------Cc
Q 005877 314 --LYSAYNGIGYLYVKGYGV----------------------------------------------------------EK 333 (672)
Q Consensus 314 --~~~a~~~Lg~~y~~g~g~----------------------------------------------------------~~ 333 (672)
.......|+.+|...... ..
T Consensus 410 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~ 489 (987)
T PRK09782 410 RLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD 489 (987)
T ss_pred ccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Confidence 111222444444321000 00
Q ss_pred CCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCccCCHHHH
Q 005877 334 KNYTKAKEYFEKAADNE-EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-GHQKAFYQLAKMFHTGVGLKKNLHMA 411 (672)
Q Consensus 334 ~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~L~~~y~~g~g~~~~~~~A 411 (672)
+++.+|+..|.+++... +......+|..+.. .+++++|+..|+++... .....++.+|.++.. .++.++|
T Consensus 490 ~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~----~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~----~Gd~~eA 561 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQ----VEDYATALAAWQKISLHDMSNEDLLAAANTAQA----AGNGAAR 561 (987)
T ss_pred CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHH----CCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHH----CCCHHHH
Confidence 23444555455444332 11122223333344 56777777777776543 234456677777766 7788888
Q ss_pred HHHHHHHHHcCChh--HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhH
Q 005877 412 TALYKLVAERGPWS--SLSRWALESYLKGDVGKAFLLYSRMAELG-YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERH 488 (672)
Q Consensus 412 ~~~~~~a~~~~~~~--a~~~lg~~~~~~g~~~~A~~~~~~a~~~g-~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~ 488 (672)
+.+|+++++..+.. ....++......|++++|+..|+++++.. +..++.++|.++.+ .+++
T Consensus 562 ~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~----------------lG~~ 625 (987)
T PRK09782 562 DRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQ----------------RHNV 625 (987)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----------------CCCH
Confidence 88888888776432 33344555556699999999999997653 47788899999888 7789
Q ss_pred HHHHHHHHHHH--hCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHH
Q 005877 489 QCAHSLWWQAS--EQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAK 564 (672)
Q Consensus 489 ~~A~~~~~~a~--~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 564 (672)
++|+..+++++ .++++.+++++|.++. ..+++++|+.+|++|++ ++++.++++||.++.. .|++++|+
T Consensus 626 deA~~~l~~AL~l~Pd~~~a~~nLG~aL~----~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~----lGd~~eA~ 697 (987)
T PRK09782 626 PAAVSDLRAALELEPNNSNYQAALGYALW----DSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR----LDDMAATQ 697 (987)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHH
Confidence 99999999865 4567899999999999 78999999999999977 5799999999999987 89999999
Q ss_pred HHHHHHHhcCCCCc
Q 005877 565 RYYDQALEVDPAAK 578 (672)
Q Consensus 565 ~~~~~A~~~~~~~~ 578 (672)
.+|++|++++|+..
T Consensus 698 ~~l~~Al~l~P~~a 711 (987)
T PRK09782 698 HYARLVIDDIDNQA 711 (987)
T ss_pred HHHHHHHhcCCCCc
Confidence 99999999998763
No 12
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.3e-22 Score=218.15 Aligned_cols=437 Identities=16% Similarity=0.137 Sum_probs=359.7
Q ss_pred CCCCCcccccCC--CCCCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhC-----CChHHHHHHHHHhhcCCcc
Q 005877 68 DPGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAME-----GDPHARSVLGFLYGMGMMR 140 (672)
Q Consensus 68 ~~~~a~~~~~~~--~~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~G~g~ 140 (672)
.+..+...+..+ .++.+|.++..++..++. .+|++.+..+..-+... --++..|.+|..|..
T Consensus 251 s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf-------K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha---- 319 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKENNENPVALNHLANHFYF-------KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHA---- 319 (1018)
T ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh-------cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh----
Confidence 344444444444 668889999999988775 69999999999986554 236789999999999
Q ss_pred cCCHHHHHHHHHHHHhC--CC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhh
Q 005877 141 ERNKGKAFLYHHFAAEG--GN-IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKG 217 (672)
Q Consensus 141 ~~d~~~A~~~~~~A~~~--~~-~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 217 (672)
.||+++|..||.++... ++ .-+++.||.+|+..|+++.|+.+|+++.+..|+.+ .+..-+|
T Consensus 320 ~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~----------------etm~iLG 383 (1018)
T KOG2002|consen 320 QGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNY----------------ETMKILG 383 (1018)
T ss_pred hccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchH----------------HHHHHHH
Confidence 99999999999999873 44 78999999999999999999999999999876644 2233467
Q ss_pred HhhhccC----ChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH-------cCCHHHHHH
Q 005877 218 ALRKSRG----EDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD-------KGEPQSMEF 284 (672)
Q Consensus 218 ~~~~~~g----~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~-------~~~~~a~~~ 284 (672)
.+|...+ .-++|...+.+.... .+.++++.|+.+|..+ |+..++..|.+|++ .--++..++
T Consensus 384 ~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~------d~~~sL~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 384 CLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT------DPWASLDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred hHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc------ChHHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 7776654 567899999988766 5999999999999887 88888999999985 235789999
Q ss_pred HHHHHHcCCCCcCCHHHHHHHHHHHHHc----C--------CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--C
Q 005877 285 LGEIYARGAGVERNYTKALEWLTHAARQ----Q--------LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--E 350 (672)
Q Consensus 285 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~--------~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~ 350 (672)
+|..+.. .|++++|...|..|... . +....++|+.+... .++++.|.+.|+..++. +
T Consensus 458 vaslhf~----~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~-----l~~~~~A~e~Yk~Ilkehp~ 528 (1018)
T KOG2002|consen 458 VASLHFR----LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEE-----LHDTEVAEEMYKSILKEHPG 528 (1018)
T ss_pred HHHHHHH----hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHh-----hhhhhHHHHHHHHHHHHCch
Confidence 9999998 99999999999999754 1 22348999999985 56999999999999875 6
Q ss_pred CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC----Ch
Q 005877 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----PW 424 (672)
Q Consensus 351 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~ 424 (672)
..+++..||.+-.. ..+..+|..+++.+++. .+++++..+|.+|.. ..+...|..-|+.....- ++
T Consensus 529 YId~ylRl~~ma~~----k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~----k~~~~~a~k~f~~i~~~~~~~~D~ 600 (1018)
T KOG2002|consen 529 YIDAYLRLGCMARD----KNNLYEASLLLKDALNIDSSNPNARSLLGNLHLK----KSEWKPAKKKFETILKKTSTKTDA 600 (1018)
T ss_pred hHHHHHHhhHHHHh----ccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHh----hhhhcccccHHHHHHhhhccCCch
Confidence 89999999988777 88999999999999885 489999999999987 777888888777665543 34
Q ss_pred hHHHHHHHHHHh------------cCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHH
Q 005877 425 SSLSRWALESYL------------KGDVGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQC 490 (672)
Q Consensus 425 ~a~~~lg~~~~~------------~g~~~~A~~~~~~a~~~g--~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~ 490 (672)
-++..||+.+.. .+.+++|+..|.+++..+ |..|-+-+|.++.. .+++.+
T Consensus 601 YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~----------------kg~~~~ 664 (1018)
T KOG2002|consen 601 YSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAE----------------KGRFSE 664 (1018)
T ss_pred hHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhh----------------ccCchH
Confidence 456677876553 235678888888887765 66677778888877 788999
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHcCCCCCCCHHHHH
Q 005877 491 AHSLWWQASEQ--GNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ----SNAQAMFNLGYMHEHGQGLPLDLHLAK 564 (672)
Q Consensus 491 A~~~~~~a~~~--~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 564 (672)
|+..|.+..+. ..+++|+|||.||. ..+.|..|++.|+..++. +++..+..||..|.. .+.+.+|+
T Consensus 665 A~dIFsqVrEa~~~~~dv~lNlah~~~----e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~----~~~~~eak 736 (1018)
T KOG2002|consen 665 ARDIFSQVREATSDFEDVWLNLAHCYV----EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYE----AGKLQEAK 736 (1018)
T ss_pred HHHHHHHHHHHHhhCCceeeeHHHHHH----HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH----hhhHHHHH
Confidence 99999976554 56899999999999 899999999999999874 689999999999887 67799999
Q ss_pred HHHHHHHhcCCCCc
Q 005877 565 RYYDQALEVDPAAK 578 (672)
Q Consensus 565 ~~~~~A~~~~~~~~ 578 (672)
++..+|+.+.|...
T Consensus 737 ~~ll~a~~~~p~~~ 750 (1018)
T KOG2002|consen 737 EALLKARHLAPSNT 750 (1018)
T ss_pred HHHHHHHHhCCccc
Confidence 99999999988764
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=4.4e-21 Score=216.50 Aligned_cols=387 Identities=14% Similarity=0.043 Sum_probs=285.0
Q ss_pred hHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCc
Q 005877 124 PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG-GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPV 202 (672)
Q Consensus 124 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~-~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~ 202 (672)
+..+..+|..|.. .+++++|+.+|++++.. .++..+.++|.+|...|++++|+..++++++..|..
T Consensus 127 a~~~k~~G~~~~~----~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~--------- 193 (615)
T TIGR00990 127 AAKLKEKGNKAYR----NKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDY--------- 193 (615)
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC---------
Confidence 4467788999998 99999999999999983 357889999999999999999999999999865432
Q ss_pred ccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CC
Q 005877 203 IEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG--NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GE 278 (672)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~--~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~ 278 (672)
..+...++.++..+|++++|+..|..+...+ +......+...++ ...+......+++. .+
T Consensus 194 -------~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~~a~~~~~~~l~~~~~~ 257 (615)
T TIGR00990 194 -------SKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLL---------KKFAESKAKEILETKPEN 257 (615)
T ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH---------HHHHHHHHHHHHhcCCCC
Confidence 1344568888899999999998887665442 1111111111111 12233333444332 23
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC-----C
Q 005877 279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-----E 351 (672)
Q Consensus 279 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~-----~ 351 (672)
..+...+|..+... ....+..-+....+. ....++..+|..+... ...+++++|+.+|+++++.+ .
T Consensus 258 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~--~~~~~y~~A~~~~~~al~~~~~~~~~ 330 (615)
T TIGR00990 258 LPSVTFVGNYLQSF-----RPKPRPAGLEDSNELDEETGNGQLQLGLKSPES--KADESYEEAARAFEKALDLGKLGEKE 330 (615)
T ss_pred CCCHHHHHHHHHHc-----cCCcchhhhhcccccccccccchHHHHHHHHHh--hhhhhHHHHHHHHHHHHhcCCCChhh
Confidence 33444555554321 111111222222221 1223445555544321 02358999999999999763 5
Q ss_pred HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC--ChhHH
Q 005877 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSL 427 (672)
Q Consensus 352 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~ 427 (672)
+.+++.+|.++.. .+++++|+.+|+++++. ....++..+|.++.. .+++++|+.+|+++++.. ++.++
T Consensus 331 a~a~~~lg~~~~~----~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~ 402 (615)
T TIGR00990 331 AIALNLRGTFKCL----KGKHLEALADLSKSIELDPRVTQSYIKRASMNLE----LGDPDKAEEDFDKALKLNSEDPDIY 402 (615)
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 6789999999999 99999999999999875 467899999999987 899999999999999987 46789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh--CCC
Q 005877 428 SRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE--QGN 503 (672)
Q Consensus 428 ~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~ 503 (672)
+.+|.+++..|++++|+..|+++++. ++..++.++|.++.+ .+++++|+..++++++ +.+
T Consensus 403 ~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~----------------~g~~~eA~~~~~~al~~~P~~ 466 (615)
T TIGR00990 403 YHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK----------------EGSIASSMATFRRCKKNFPEA 466 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH----------------CCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999766 478889999999988 7789999999998765 466
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC--CHH------HHHHHHHH-HHcCCCCCCCHHHHHHHHHHHHhcC
Q 005877 504 EHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQS--NAQ------AMFNLGYM-HEHGQGLPLDLHLAKRYYDQALEVD 574 (672)
Q Consensus 504 ~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~------a~~~Lg~~-y~~g~g~~~d~~~A~~~~~~A~~~~ 574 (672)
+.+++.+|.++. ..+++++|+..|++|++.. +.. .+.+.+.. +.. .+++++|.+++++|++++
T Consensus 467 ~~~~~~lg~~~~----~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~----~~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 467 PDVYNYYGELLL----DQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW----KQDFIEAENLCEKALIID 538 (615)
T ss_pred hHHHHHHHHHHH----HccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHhcC
Confidence 899999999999 8899999999999998752 211 22233333 332 589999999999999999
Q ss_pred CCCc
Q 005877 575 PAAK 578 (672)
Q Consensus 575 ~~~~ 578 (672)
|+..
T Consensus 539 p~~~ 542 (615)
T TIGR00990 539 PECD 542 (615)
T ss_pred CCcH
Confidence 8764
No 14
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=1e-19 Score=209.35 Aligned_cols=382 Identities=11% Similarity=0.020 Sum_probs=281.4
Q ss_pred hhhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHH
Q 005877 105 VRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAV 180 (672)
Q Consensus 105 ~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~ 180 (672)
.|+.++|+..+++.. ++..+.++..+|.++.. .+++++|+.+|++++. ++++.+...++.++...+++++|+
T Consensus 28 ~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~ 103 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRN----LKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEAL 103 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 577788888888854 44556668888888887 7888888888888765 577888888888888888888888
Q ss_pred HHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 005877 181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLR 260 (672)
Q Consensus 181 ~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~ 260 (672)
..++++++. .++++. ++.+|.++...
T Consensus 104 ~~l~~~l~~------------------------------------------------~P~~~~-~~~la~~l~~~----- 129 (765)
T PRK10049 104 VKAKQLVSG------------------------------------------------APDKAN-LLALAYVYKRA----- 129 (765)
T ss_pred HHHHHHHHh------------------------------------------------CCCCHH-HHHHHHHHHHC-----
Confidence 888877663 334566 67777777666
Q ss_pred cCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCCCC
Q 005877 261 RDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQL------YSAYNGIGYLYVKGYGVE 332 (672)
Q Consensus 261 ~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~y~~g~g~~ 332 (672)
+++++|+..|+++++ ++++.++..+|.++.. .+..++|+..++++.+..+ ......+..++.......
T Consensus 130 g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~----~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~ 205 (765)
T PRK10049 130 GRHWDELRAMTQALPRAPQTQQYPTEYVQALRN----NRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSE 205 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccCh
Confidence 377777777777766 3567777777777776 6677777777766554110 011112222222100011
Q ss_pred cCCH---HHHHHHHHHHHhC--CCHH-------HHHH-HHHHHHcCCCchhcHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 005877 333 KKNY---TKAKEYFEKAADN--EEAG-------GHYN-LGVMYYKGIGVKRDVKLACKYFLVAANAG---HQKAFYQLAK 396 (672)
Q Consensus 333 ~~~~---~~A~~~~~~a~~~--~~~~-------a~~~-Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~L~~ 396 (672)
.+.+ ++|+..++++++. .+|. +... +|.++ . .+++++|+..|+++++.+ +..+...+|.
T Consensus 206 ~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll-~----~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~ 280 (765)
T PRK10049 206 KERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL-A----RDRYKDVISEYQRLKAEGQIIPPWAQRWVAS 280 (765)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH-H----hhhHHHHHHHHHHhhccCCCCCHHHHHHHHH
Confidence 2234 7788888888754 2222 2222 55554 4 578999999999988765 4456677888
Q ss_pred HHHcCCCccCCHHHHHHHHHHHHHcCCh------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----------------
Q 005877 397 MFHTGVGLKKNLHMATALYKLVAERGPW------SSLSRWALESYLKGDVGKAFLLYSRMAELG---------------- 454 (672)
Q Consensus 397 ~y~~g~g~~~~~~~A~~~~~~a~~~~~~------~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g---------------- 454 (672)
+|.. .+++++|+.+|+++++..+. .....++..+...|++++|+.+++++.+..
T Consensus 281 ~yl~----~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~ 356 (765)
T PRK10049 281 AYLK----LHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPND 356 (765)
T ss_pred HHHh----cCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCc
Confidence 8887 89999999999998876642 346667778889999999999999987653
Q ss_pred -CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 005877 455 -YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS--EQGNEHAALLIGDAYYYGRGTQRDYERAAEAY 531 (672)
Q Consensus 455 -~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~ 531 (672)
...++..++.++.. .+++++|+..+++++ .++++.+++.+|.++. ..+++++|++.+
T Consensus 357 ~~~~a~~~~a~~l~~----------------~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~----~~g~~~~A~~~l 416 (765)
T PRK10049 357 DWLQGQSLLSQVAKY----------------SNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ----ARGWPRAAENEL 416 (765)
T ss_pred hHHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH----hcCCHHHHHHHH
Confidence 13466778888877 778999999999754 5678999999999999 899999999999
Q ss_pred HHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcchh
Q 005877 532 MHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPV 581 (672)
Q Consensus 532 ~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~ 581 (672)
+++++ ++++...+.+|.++.. .+++++|...++++++..|+.....
T Consensus 417 ~~al~l~Pd~~~l~~~~a~~al~----~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 417 KKAEVLEPRNINLEVEQAWTALD----LQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHhhCCCChHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99977 4789999999999887 8899999999999999999976544
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=1e-19 Score=205.00 Aligned_cols=307 Identities=8% Similarity=-0.073 Sum_probs=252.1
Q ss_pred hhhHHHHHHHHHH--HHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHH
Q 005877 105 VRVMEEATSEVES--AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAV 180 (672)
Q Consensus 105 ~~~~~~A~~~~~~--a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~ 180 (672)
.|++++|...++. +..+.++++++.||.+... .+++++|+..|++++. ++++.++..+|.++...|++++|+
T Consensus 55 ~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~----~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai 130 (656)
T PRK15174 55 KDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLA----SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVA 130 (656)
T ss_pred cCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhh----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 5888999999988 5567889999999988887 8899999999999876 788999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCC
Q 005877 181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRG 258 (672)
Q Consensus 181 ~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~--~~~~~a~~~Lg~~y~~~~~~ 258 (672)
..|+++++..|... .....++.++...|++++|+..+++... ++++.++..++. ++..
T Consensus 131 ~~l~~Al~l~P~~~----------------~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~~--- 190 (656)
T PRK15174 131 DLAEQAWLAFSGNS----------------QIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLS-FLNK--- 190 (656)
T ss_pred HHHHHHHHhCCCcH----------------HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHc---
Confidence 99999988654321 2344578888899999999999987644 367777766654 4444
Q ss_pred cccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCc
Q 005877 259 LRRDRTKALMWFSKAADKG---EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEK 333 (672)
Q Consensus 259 ~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~ 333 (672)
+++++|+..++++++.. .......++.++.. .+++++|+..|+++++. +++.++..+|.+|.. .
T Consensus 191 --g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~----~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~-----~ 259 (656)
T PRK15174 191 --SRLPEDHDLARALLPFFALERQESAGLAVDTLCA----VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQ-----S 259 (656)
T ss_pred --CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----c
Confidence 49999999999987753 33444566788887 89999999999999875 478889999999985 4
Q ss_pred CCHHH----HHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCcc
Q 005877 334 KNYTK----AKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLK 405 (672)
Q Consensus 334 ~~~~~----A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~ 405 (672)
|++++ |+.+|+++++. +++.++..+|.++.. .+++++|+.+++++++. .++.+..++|.++.. .
T Consensus 260 G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~----~ 331 (656)
T PRK15174 260 GRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR----TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQ----V 331 (656)
T ss_pred CCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----C
Confidence 56664 89999999876 578899999999999 89999999999999874 577889999999987 8
Q ss_pred CCHHHHHHHHHHHHHcCChh--HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877 406 KNLHMATALYKLVAERGPWS--SLSRWALESYLKGDVGKAFLLYSRMAELG 454 (672)
Q Consensus 406 ~~~~~A~~~~~~a~~~~~~~--a~~~lg~~~~~~g~~~~A~~~~~~a~~~g 454 (672)
+++++|+..|+++++..|.. ....+|..+...|++++|+..|+++++..
T Consensus 332 G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 332 GQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999999999999887544 45556888899999999999999997663
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.89 E-value=2.7e-18 Score=197.77 Aligned_cols=430 Identities=11% Similarity=-0.003 Sum_probs=258.0
Q ss_pred chHHHHHHHHHHHhcCCChhhHHHHHHHHHH--HHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHH
Q 005877 87 GSYYITISKMMSAVTNGDVRVMEEATSEVES--AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQS 162 (672)
Q Consensus 87 a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~--a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a 162 (672)
.+|..|..... .||+++|+..|++ ..+|+++.+++.|+.+|.. .+++++|+.+.+++++ ++|...
T Consensus 46 ~~f~~a~~~~~-------~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~----~g~~~~A~~~~~kAv~ldP~n~~~ 114 (987)
T PRK09782 46 PRLDKALKAQK-------NNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRH----FGHDDRARLLLEDQLKRHPGDARL 114 (987)
T ss_pred HHHHHHHHHHh-------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCcccHHH
Confidence 35555555552 5999999999999 4677999999999999999 9999999999999997 577888
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHh--------hhccCChHHHHHHHH
Q 005877 163 KMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGAL--------RKSRGEDDEAFQILE 234 (672)
Q Consensus 163 ~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~g~~~~Ai~~~~ 234 (672)
+..|+.+ +++++|+.+|+++++..|..- .+...++.. |.+.++..++++ .
T Consensus 115 ~~~La~i----~~~~kA~~~ye~l~~~~P~n~----------------~~~~~la~~~~~~~~l~y~q~eqAl~AL~--l 172 (987)
T PRK09782 115 ERSLAAI----PVEVKSVTTVEELLAQQKACD----------------AVPTLRCRSEVGQNALRLAQLPVARAQLN--D 172 (987)
T ss_pred HHHHHHh----ccChhHHHHHHHHHHhCCCCh----------------hHHHHHHHHhhccchhhhhhHHHHHHHHH--H
Confidence 8888777 899999999999999765421 222234444 555566666666 3
Q ss_pred HHHHc-CCHH-HHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCC----------------
Q 005877 235 YQAQK-GNAG-AMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAG---------------- 294 (672)
Q Consensus 235 ~aa~~-~~~~-a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g---------------- 294 (672)
+...+ +++. ..+.++.+|... +|+++|++.+++.++. .+......||.+|....+
T Consensus 173 r~~~~~~~~~vL~L~~~rlY~~l-----~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~ 247 (987)
T PRK09782 173 ATFAASPEGKTLRTDLLQRAIYL-----KQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDP 247 (987)
T ss_pred hhhCCCCCcHHHHHHHHHHHHHH-----hCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCH
Confidence 33333 3454 455559999888 5999999999998774 345555556655554100
Q ss_pred -----------CcCCHHHHHHHHHHHHH-----cCCHHHHHHHHH-----------------------------------
Q 005877 295 -----------VERNYTKALEWLTHAAR-----QQLYSAYNGIGY----------------------------------- 323 (672)
Q Consensus 295 -----------~~~~~~~A~~~~~~a~~-----~~~~~a~~~Lg~----------------------------------- 323 (672)
-.++.++|.+++++--. .++..-++.++.
T Consensus 248 ~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (987)
T PRK09782 248 QSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEG 327 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhcc
Confidence 04445555544443100 000000111110
Q ss_pred ----------------------------------------HHHcCCC------------CCcCCHHHHHHHHHHHHhC-C
Q 005877 324 ----------------------------------------LYVKGYG------------VEKKNYTKAKEYFEKAADN-E 350 (672)
Q Consensus 324 ----------------------------------------~y~~g~g------------~~~~~~~~A~~~~~~a~~~-~ 350 (672)
+|....+ +..|+.++|..+|+++.+. +
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~ 407 (987)
T PRK09782 328 QYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQG 407 (987)
T ss_pred HHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCc
Confidence 1111000 1235777777777777652 1
Q ss_pred C----HHHHHHHHHHHHcCCC-----------c----------hhcH---HHHHHHHHHHHH--cC--CHHHHHHHHHHH
Q 005877 351 E----AGGHYNLGVMYYKGIG-----------V----------KRDV---KLACKYFLVAAN--AG--HQKAFYQLAKMF 398 (672)
Q Consensus 351 ~----~~a~~~Lg~~y~~g~g-----------~----------~~~~---~~A~~~~~~A~~--~~--~~~a~~~L~~~y 398 (672)
+ ......|+.+|..... . .++. ..+...+.+++. ++ ++.+++++|.++
T Consensus 408 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l 487 (987)
T PRK09782 408 DARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCY 487 (987)
T ss_pred ccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHH
Confidence 1 1122245544443211 0 0111 111222222221 12 445555555555
Q ss_pred HcCC----------------------------CccCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005877 399 HTGV----------------------------GLKKNLHMATALYKLVAERGP-WSSLSRWALESYLKGDVGKAFLLYSR 449 (672)
Q Consensus 399 ~~g~----------------------------g~~~~~~~A~~~~~~a~~~~~-~~a~~~lg~~~~~~g~~~~A~~~~~~ 449 (672)
..|. ...+++++|+..|+++....+ ....+.+|..+...|++++|..+|++
T Consensus 488 ~~~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 488 RDTLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred HhCCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4200 003444444444444433321 12334444444445555555555555
Q ss_pred HHHcC--CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhCCCCCCCHHH
Q 005877 450 MAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG-NEHAALLIGDAYYYGRGTQRDYER 526 (672)
Q Consensus 450 a~~~g--~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lG~~y~~g~g~~~d~~~ 526 (672)
+++.+ +......++..+.. .+++++|+..++++++.. ++.+++++|.++. ..+++++
T Consensus 568 AL~l~P~~~~l~~~La~~l~~----------------~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~----~lG~~de 627 (987)
T PRK09782 568 AEQRGLGDNALYWWLHAQRYI----------------PGQPELALNDLTRSLNIAPSANAYVARATIYR----QRHNVPA 627 (987)
T ss_pred HHhcCCccHHHHHHHHHHHHh----------------CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH----HCCCHHH
Confidence 44432 11111111111111 378899999999887643 3788889999999 8899999
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877 527 AAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK 578 (672)
Q Consensus 527 A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 578 (672)
|+.+|+++++ ++++.++++||.++.. .|++++|+..|++|++.+|+..
T Consensus 628 A~~~l~~AL~l~Pd~~~a~~nLG~aL~~----~G~~eeAi~~l~~AL~l~P~~~ 677 (987)
T PRK09782 628 AVSDLRAALELEPNNSNYQAALGYALWD----SGDIAQSREMLERAHKGLPDDP 677 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999876 4789999999998877 7899999999999999998754
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=3.2e-19 Score=200.98 Aligned_cols=306 Identities=8% Similarity=-0.045 Sum_probs=227.5
Q ss_pred cCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhH
Q 005877 141 ERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGA 218 (672)
Q Consensus 141 ~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 218 (672)
.++.++|...++..+. +++++++..||.+....|++++|+..|+++++.
T Consensus 55 ~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~----------------------------- 105 (656)
T PRK15174 55 KDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV----------------------------- 105 (656)
T ss_pred cCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh-----------------------------
Confidence 7899999999988765 789999999999999999999999999998763
Q ss_pred hhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCc
Q 005877 219 LRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVE 296 (672)
Q Consensus 219 ~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~ 296 (672)
+++++.++..+|.++... +++++|+..|+++++ ++++.++..+|.++.. .
T Consensus 106 -------------------~P~~~~a~~~la~~l~~~-----g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~----~ 157 (656)
T PRK15174 106 -------------------NVCQPEDVLLVASVLLKS-----KQYATVADLAEQAWLAFSGNSQIFALHLRTLVL----M 157 (656)
T ss_pred -------------------CCCChHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----C
Confidence 455677777778877776 378888888888776 4677777788888777 7
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCchhc
Q 005877 297 RNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE---EAGGHYNLGVMYYKGIGVKRD 371 (672)
Q Consensus 297 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 371 (672)
+++++|+..+++.+.. +++.++..++. +.. +|++++|+..++++++.. .......++.++.. .++
T Consensus 158 g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~-----~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~----~g~ 227 (656)
T PRK15174 158 DKELQAISLARTQAQEVPPRGDMIATCLS-FLN-----KSRLPEDHDLARALLPFFALERQESAGLAVDTLCA----VGK 227 (656)
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHH-----cCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH----CCC
Confidence 8888888877776543 45555555443 332 457888888887776653 23333455666766 778
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHH----HHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHH
Q 005877 372 VKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHM----ATALYKLVAERGP--WSSLSRWALESYLKGDVGKA 443 (672)
Q Consensus 372 ~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~----A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A 443 (672)
+++|+..|+++++. +++.+++++|.++.. .+++++ |+.+|+++++..| +.++..+|.++...|++++|
T Consensus 228 ~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~----~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA 303 (656)
T PRK15174 228 YQEAIQTGESALARGLDGAALRRSLGLAYYQ----SGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKA 303 (656)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 88888888887764 467777788887776 666664 7888888877764 44677788888888888888
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhCCC
Q 005877 444 FLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ--GNEHAALLIGDAYYYGRG 519 (672)
Q Consensus 444 ~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lG~~y~~g~g 519 (672)
+..++++++. +++.++.++|.++.. .+++++|+..++++... +++.....+|.++.
T Consensus 304 ~~~l~~al~l~P~~~~a~~~La~~l~~----------------~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~---- 363 (656)
T PRK15174 304 IPLLQQSLATHPDLPYVRAMYARALRQ----------------VGQYTAASDEFVQLAREKGVTSKWNRYAAAALL---- 363 (656)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH----------------CCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH----
Confidence 8888888554 467777788888776 66788888888876644 34455566788888
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 005877 520 TQRDYERAAEAYMHARSQ 537 (672)
Q Consensus 520 ~~~d~~~A~~~~~~A~~~ 537 (672)
..+++++|+.+|+++++.
T Consensus 364 ~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 364 QAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HCCCHHHHHHHHHHHHHh
Confidence 788999999999998775
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=1.2e-17 Score=192.22 Aligned_cols=346 Identities=12% Similarity=0.007 Sum_probs=269.6
Q ss_pred cCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhH
Q 005877 141 ERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGA 218 (672)
Q Consensus 141 ~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 218 (672)
.++.++|+..|.++.. +....++..+|.++...+++++|+..|+++++
T Consensus 28 ~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~------------------------------ 77 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALS------------------------------ 77 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------------------
Confidence 7788888888888764 45556688888888888888888888887765
Q ss_pred hhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCc
Q 005877 219 LRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVE 296 (672)
Q Consensus 219 ~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~ 296 (672)
.+++++.+...++.++... +++++|+..++++++ ++++. +..+|.++.. .
T Consensus 78 ------------------~~P~~~~a~~~la~~l~~~-----g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~----~ 129 (765)
T PRK10049 78 ------------------LEPQNDDYQRGLILTLADA-----GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR----A 129 (765)
T ss_pred ------------------hCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH----C
Confidence 3456888999999999888 499999999999987 46788 9999999999 9
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCC------HHHHHHHHHHHH-cCCC
Q 005877 297 RNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE------AGGHYNLGVMYY-KGIG 367 (672)
Q Consensus 297 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~y~-~g~g 367 (672)
+++++|+..|+++++. +++.++..++.++.. .+..++|+..++++....+ ......+..++. .+..
T Consensus 130 g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~-----~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~ 204 (765)
T PRK10049 130 GRHWDELRAMTQALPRAPQTQQYPTEYVQALRN-----NRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRS 204 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----CCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccC
Confidence 9999999999999975 588888999999875 4588899999987765211 012222222222 1111
Q ss_pred chhcH---HHHHHHHHHHHHc--CCHH-------HHH-HHHHHHHcCCCccCCHHHHHHHHHHHHHcC---ChhHHHHHH
Q 005877 368 VKRDV---KLACKYFLVAANA--GHQK-------AFY-QLAKMFHTGVGLKKNLHMATALYKLVAERG---PWSSLSRWA 431 (672)
Q Consensus 368 ~~~~~---~~A~~~~~~A~~~--~~~~-------a~~-~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 431 (672)
..+++ ++|+..|+++++. .++. +.. .++.++. .+++++|+..|+++++.+ |..+...+|
T Consensus 205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~-----~g~~~eA~~~~~~ll~~~~~~P~~a~~~la 279 (765)
T PRK10049 205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA-----RDRYKDVISEYQRLKAEGQIIPPWAQRWVA 279 (765)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHhhccCCCCCHHHHHHHH
Confidence 23344 7899999998853 2221 212 2555554 589999999999999886 344666789
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC--
Q 005877 432 LESYLKGDVGKAFLLYSRMAELGY------EVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN-- 503 (672)
Q Consensus 432 ~~~~~~g~~~~A~~~~~~a~~~g~------~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-- 503 (672)
.++...|++++|+.+|+++++... ......+++++.. .+++++|+.+++++.+..+
T Consensus 280 ~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~----------------~g~~~eA~~~l~~~~~~~P~~ 343 (765)
T PRK10049 280 SAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE----------------SENYPGALTVTAHTINNSPPF 343 (765)
T ss_pred HHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh----------------cccHHHHHHHHHHHhhcCCce
Confidence 999999999999999999976542 2456667776655 7899999999998766432
Q ss_pred ---------------HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Q 005877 504 ---------------EHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRY 566 (672)
Q Consensus 504 ---------------~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 566 (672)
..++..+|.++. ..+++++|+..+++++. ++++..+.++|.++.. .+++++|++.
T Consensus 344 ~~~~~~~~~~p~~~~~~a~~~~a~~l~----~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~----~g~~~~A~~~ 415 (765)
T PRK10049 344 LRLYGSPTSIPNDDWLQGQSLLSQVAK----YSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQA----RGWPRAAENE 415 (765)
T ss_pred EeecCCCCCCCCchHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Confidence 356789999999 88999999999999876 5889999999999987 8999999999
Q ss_pred HHHHHhcCCCCc
Q 005877 567 YDQALEVDPAAK 578 (672)
Q Consensus 567 ~~~A~~~~~~~~ 578 (672)
+++|++++|+..
T Consensus 416 l~~al~l~Pd~~ 427 (765)
T PRK10049 416 LKKAEVLEPRNI 427 (765)
T ss_pred HHHHHhhCCCCh
Confidence 999999999864
No 19
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=99.85 E-value=2.2e-19 Score=183.76 Aligned_cols=204 Identities=33% Similarity=0.475 Sum_probs=175.3
Q ss_pred hccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHH
Q 005877 221 KSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYT 300 (672)
Q Consensus 221 ~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~ 300 (672)
...+++..++.++++++..+++.+++.++.+|..+ .++++|.++|++||+++++.|++.+++.||.+|..|.||..|..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g-~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~ 130 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELGDAAALALLGQMYGAG-KGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLV 130 (292)
T ss_pred cccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhc-cCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHH
Confidence 35668888999999988888889999999999888 68889999999999999999999999999999999988889999
Q ss_pred HHHHHHHHHHHcCCHHH---HHHHHHHHHcC---CCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHH
Q 005877 301 KALEWLTHAARQQLYSA---YNGIGYLYVKG---YGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKL 374 (672)
Q Consensus 301 ~A~~~~~~a~~~~~~~a---~~~Lg~~y~~g---~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~ 374 (672)
+|..||++|++.|++.+ ++.||.+|..| .++.. +...|+.+|.++.+.++++++++||.+|..|.|+..|+.+
T Consensus 131 ~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~-~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~ 209 (292)
T COG0790 131 KALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAY-DDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKK 209 (292)
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccH-HHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHH
Confidence 99999999999998888 89999999988 66655 6678999999999999999999999999999889999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCccC----------CHHHHHHHHHHHHHcCChhH
Q 005877 375 ACKYFLVAANAGHQKAFYQLAKMFHTGVGLKK----------NLHMATALYKLVAERGPWSS 426 (672)
Q Consensus 375 A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~----------~~~~A~~~~~~a~~~~~~~a 426 (672)
|+.||++|++.++..+.++++.++..|.++.+ +..+|..++.++.+.++..+
T Consensus 210 A~~wy~~Aa~~g~~~a~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 271 (292)
T COG0790 210 AFRWYKKAAEQGDGAACYNLGLMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNA 271 (292)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhH
Confidence 99999999998888889999988888877655 77777777777776665443
No 20
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=99.83 E-value=1.5e-18 Score=177.58 Aligned_cols=205 Identities=33% Similarity=0.519 Sum_probs=191.4
Q ss_pred CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCH
Q 005877 257 RGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNY 336 (672)
Q Consensus 257 ~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~ 336 (672)
...+.++..|..+++++...+++.+...++.+|..|.|+..|.++|+.||+.+++.+++.+++.||.+|..|.|+.+ |.
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~-d~ 129 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPL-DL 129 (292)
T ss_pred ccccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCccc-CH
Confidence 34667999999999999999999999999999999999999999999999999999999999999999999999877 99
Q ss_pred HHHHHHHHHHHhCCCHHH---HHHHHHHHHcC---CCchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHH
Q 005877 337 TKAKEYFEKAADNEEAGG---HYNLGVMYYKG---IGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHM 410 (672)
Q Consensus 337 ~~A~~~~~~a~~~~~~~a---~~~Lg~~y~~g---~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~ 410 (672)
.+|..||++|++.|++.+ ++.+|.+|..| .++..+..+|+.+|.++...+++.++++||.+|..|.|+.+|..+
T Consensus 130 ~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~ 209 (292)
T COG0790 130 VKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKK 209 (292)
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHH
Confidence 999999999999999999 99999999999 778888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 005877 411 ATALYKLVAERGPWSSLSRWALESYLKG---------------DVGKAFLLYSRMAELGYEVAQSNAA 463 (672)
Q Consensus 411 A~~~~~~a~~~~~~~a~~~lg~~~~~~g---------------~~~~A~~~~~~a~~~g~~~a~~nla 463 (672)
|..||+++++.++..+.+.++ .++..| +..+|..++.++...+...+...+-
T Consensus 210 A~~wy~~Aa~~g~~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 210 AFRWYKKAAEQGDGAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred HHHHHHHHHHCCCHHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 999999999999988889999 666555 8899999999999999887765443
No 21
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=6.7e-18 Score=167.28 Aligned_cols=131 Identities=18% Similarity=0.118 Sum_probs=104.0
Q ss_pred HHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCC
Q 005877 125 HARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG----GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDS 200 (672)
Q Consensus 125 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~ 200 (672)
..+++|+.-|.. ..-+.+|+.-|+-.+.. +.-...+++|.+|++..++.+|+++|+.++++.|+.
T Consensus 202 svl~nlaqqy~~----ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsi------- 270 (840)
T KOG2003|consen 202 SVLFNLAQQYEA----NDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSI------- 270 (840)
T ss_pred HHHHHHHHHhhh----hHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhcccc-------
Confidence 567788888876 66788999999887762 344567899999999999999999999999875432
Q ss_pred CcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH
Q 005877 201 PVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK-GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD 275 (672)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~-~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~ 275 (672)
...+|+ .+..|+|..+.+.|+|++||..|+...+. .+..+-++|-.+++.. +|-++-.+.|++.+.
T Consensus 271 --nk~~ri--kil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i-----~d~ekmkeaf~kli~ 337 (840)
T KOG2003|consen 271 --NKDMRI--KILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAI-----GDAEKMKEAFQKLID 337 (840)
T ss_pred --chhhHH--HHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheec-----CcHHHHHHHHHHHhc
Confidence 111222 34567888899999999999999998777 4888889999998877 488888888888764
No 22
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=8.7e-16 Score=154.39 Aligned_cols=368 Identities=16% Similarity=0.083 Sum_probs=263.0
Q ss_pred hhhHHHHHHHHHHHHhC--CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHH
Q 005877 105 VRVMEEATSEVESAAME--GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAV 180 (672)
Q Consensus 105 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~ 180 (672)
.++|++|+++|.++++. +.|..+.+++-+|.. .+|.++-++-..+|++ +.+..+++.-+..+...|++++|+
T Consensus 128 ~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~----lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal 203 (606)
T KOG0547|consen 128 NKKYDEAIKYYTQAIELCPDEPIFYSNRAACYES----LGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEAL 203 (606)
T ss_pred cccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHH----HhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHH
Confidence 57899999999998876 448899999999999 9999999999999988 678999999999999999999986
Q ss_pred HHHH------------------HHHHHHH----hhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHH--
Q 005877 181 KLYA------------------ELAEIAV----NSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQ-- 236 (672)
Q Consensus 181 ~~y~------------------~a~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~a-- 236 (672)
.-.. ++++... +........|...+.. -|..|-..
T Consensus 204 ~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~---------------------fi~syf~sF~ 262 (606)
T KOG0547|consen 204 FDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSAT---------------------FIASYFGSFH 262 (606)
T ss_pred HhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHH---------------------HHHHHHhhcc
Confidence 5332 1111100 0000000111111100 01111100
Q ss_pred ----------HHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc------CC---------HHHHHHHHHHHHc
Q 005877 237 ----------AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK------GE---------PQSMEFLGEIYAR 291 (672)
Q Consensus 237 ----------a~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~------~~---------~~a~~~Lg~~y~~ 291 (672)
.+.++....-.+-.++ .+.+..|.+|.+.+.+.... -+ +.++..-|..+.-
T Consensus 263 ~~~~~~~~~~~~ksDa~l~~~l~~l~----~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL 338 (606)
T KOG0547|consen 263 ADPKPLFDNKSDKSDAALAEALEALE----KGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFL 338 (606)
T ss_pred ccccccccCCCccchhhHHHHHHHHH----hhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhh
Confidence 0111222222222222 23445788888888877652 12 4566666666665
Q ss_pred CCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Q 005877 292 GAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIG 367 (672)
Q Consensus 292 g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g 367 (672)
.||+-.|..-|.++++.. +...+..++.+|.. +.+.++-...|.+|.+.+ +++.+++-|++++-
T Consensus 339 ----~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d-----~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~fl--- 406 (606)
T KOG0547|consen 339 ----KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYAD-----ENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFL--- 406 (606)
T ss_pred ----cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhh-----hhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHH---
Confidence 899999999999999875 44558899999986 558899999999998875 99999999999999
Q ss_pred chhcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHH
Q 005877 368 VKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKA 443 (672)
Q Consensus 368 ~~~~~~~A~~~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A 443 (672)
.+++++|+.-|+++++.. +..++..++.+... +..++.+...|+.+.++-| ++.+...|.++..++++++|
T Consensus 407 -L~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr----~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A 481 (606)
T KOG0547|consen 407 -LQQYEEAIADFQKAISLDPENAYAYIQLCCALYR----QHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKA 481 (606)
T ss_pred -HHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHH
Confidence 999999999999998876 45566666666555 7799999999999999986 67788889999999999999
Q ss_pred HHHHHHHHHcCCH--------HHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC--HHHHHHHHHH
Q 005877 444 FLLYSRMAELGYE--------VAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN--EHAALLIGDA 513 (672)
Q Consensus 444 ~~~~~~a~~~g~~--------~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~lG~~ 513 (672)
++.|.+|++.... ....+-|.+..+ -.+++..|+.++++|++.++ ..|...||.+
T Consensus 482 ~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q---------------wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~ 546 (606)
T KOG0547|consen 482 VKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ---------------WKEDINQAENLLRKAIELDPKCEQAYETLAQF 546 (606)
T ss_pred HHHHHHHHhhccccccccccchhhhhhhHhhhc---------------hhhhHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 9999999877533 222233333222 14677788888888777665 5667778877
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHhc
Q 005877 514 YYYGRGTQRDYERAAEAYMHARSQ 537 (672)
Q Consensus 514 y~~g~g~~~d~~~A~~~~~~A~~~ 537 (672)
-. .+++.++|+++|++++..
T Consensus 547 ~l----Q~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 547 EL----QRGKIDEAIELFEKSAQL 566 (606)
T ss_pred HH----HHhhHHHHHHHHHHHHHH
Confidence 77 777888888888877653
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=5.6e-15 Score=167.23 Aligned_cols=427 Identities=12% Similarity=0.026 Sum_probs=291.6
Q ss_pred chHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhCCCHHHHH
Q 005877 87 GSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKM 164 (672)
Q Consensus 87 a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~ 164 (672)
..|..++.... .|+++.|+..|+++. ++.++.+.+.+..++.. .++.++|+.++++++.+.+..+..
T Consensus 36 ~~y~~aii~~r-------~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~----~G~~~~A~~~~eka~~p~n~~~~~ 104 (822)
T PRK14574 36 TQYDSLIIRAR-------AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGW----AGRDQEVIDVYERYQSSMNISSRG 104 (822)
T ss_pred HHHHHHHHHHh-------CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHH----cCCcHHHHHHHHHhccCCCCCHHH
Confidence 46666666653 577888888888844 44554444467677666 678888888888888765544444
Q ss_pred H--HHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCH
Q 005877 165 A--VAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNA 242 (672)
Q Consensus 165 ~--Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~ 242 (672)
. +|.+|...|++++|++.|+++++..|.+. .+...++..+...++.++|++.++++.... +
T Consensus 105 llalA~ly~~~gdyd~Aiely~kaL~~dP~n~----------------~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d-p 167 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSSLKKDPTNP----------------DLISGMIMTQADAGRGGVVLKQATELAERD-P 167 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHhhcCCHHHHHHHHHHhcccC-c
Confidence 4 47788888888888888888887665431 112235566777788888888888865553 1
Q ss_pred HHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--------
Q 005877 243 GAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-------- 312 (672)
Q Consensus 243 ~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------- 312 (672)
.....++.+|+.. + .++..+|++.|+++++. ++...+..+-..... .+-...|.+..++--+.
T Consensus 168 ~~~~~l~layL~~--~-~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~----~~~~~~a~~l~~~~p~~f~~~~~~~ 240 (822)
T PRK14574 168 TVQNYMTLSYLNR--A-TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQR----NRIVEPALRLAKENPNLVSAEHYRQ 240 (822)
T ss_pred chHHHHHHHHHHH--h-cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHhCccccCHHHHHH
Confidence 1222255555542 1 23565699999998874 677777777777766 56666666655542211
Q ss_pred ---CCHHHHHHHHHHHHcCCCCCcCC---HHHHHHHHHHHHhC--CCHHHHH--------HHHHHHHcCCCchhcHHHHH
Q 005877 313 ---QLYSAYNGIGYLYVKGYGVEKKN---YTKAKEYFEKAADN--EEAGGHY--------NLGVMYYKGIGVKRDVKLAC 376 (672)
Q Consensus 313 ---~~~~a~~~Lg~~y~~g~g~~~~~---~~~A~~~~~~a~~~--~~~~a~~--------~Lg~~y~~g~g~~~~~~~A~ 376 (672)
+.+.-..+.+.+... ..... .+.|+.-+++.... ..|.++- .++.+. . .+++.+++
T Consensus 241 l~~~~~a~~vr~a~~~~~---~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~-~----r~r~~~vi 312 (822)
T PRK14574 241 LERDAAAEQVRMAVLPTR---SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL-V----RHQTADLI 312 (822)
T ss_pred HHHHHHHHHHhhcccccc---cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH-H----hhhHHHHH
Confidence 001111111211110 00111 23445555554432 2232211 222222 3 57899999
Q ss_pred HHHHHHHHcC---CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC------hhH--HHHHHHHHHhcCCHHHHHH
Q 005877 377 KYFLVAANAG---HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP------WSS--LSRWALESYLKGDVGKAFL 445 (672)
Q Consensus 377 ~~~~~A~~~~---~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~------~~a--~~~lg~~~~~~g~~~~A~~ 445 (672)
+.|+..-..+ ++-+....|..|.. .+..++|+.+|+.++...+ ... ...|...+...+++++|..
T Consensus 313 ~~y~~l~~~~~~~P~y~~~a~adayl~----~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~ 388 (822)
T PRK14574 313 KEYEAMEAEGYKMPDYARRWAASAYID----RRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQ 388 (822)
T ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHh----cCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHH
Confidence 9999887555 67788999999998 9999999999999977541 122 3567788899999999999
Q ss_pred HHHHHHHcC-----------------CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHH--HhCCCHHH
Q 005877 446 LYSRMAELG-----------------YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQA--SEQGNEHA 506 (672)
Q Consensus 446 ~~~~a~~~g-----------------~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a--~~~~~~~a 506 (672)
++++..+.- +..++..++.++.. .+++.+|.+.+++. ..|+|+..
T Consensus 389 ~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~----------------~gdl~~Ae~~le~l~~~aP~n~~l 452 (822)
T PRK14574 389 FAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA----------------LNDLPTAQKKLEDLSSTAPANQNL 452 (822)
T ss_pred HHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHhCCCCHHH
Confidence 999997621 33555566666655 67899999999964 55688999
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcchhHHH
Q 005877 507 ALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPVTLA 584 (672)
Q Consensus 507 ~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~~~ 584 (672)
+..+|.++. ..+.+.+|.++++.+.. +.+..+.+.+|..+.. .+++.+|....++.++..|+..-...+.
T Consensus 453 ~~~~A~v~~----~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~----l~e~~~A~~~~~~l~~~~Pe~~~~~~l~ 524 (822)
T PRK14574 453 RIALASIYL----ARDLPRKAEQELKAVESLAPRSLILERAQAETAMA----LQEWHQMELLTDDVISRSPEDIPSQELD 524 (822)
T ss_pred HHHHHHHHH----hcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHh----hhhHHHHHHHHHHHHhhCCCchhHHHHH
Confidence 999999999 89999999999988644 5778899999999887 8999999999999999999987544333
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.76 E-value=2.1e-15 Score=161.30 Aligned_cols=288 Identities=16% Similarity=0.119 Sum_probs=211.0
Q ss_pred CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC----
Q 005877 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQL---- 314 (672)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---- 314 (672)
.....+.+|..+... +++++|+..|+++++. +++.++..+|.++.. .+++++|+..++++++.+.
T Consensus 34 ~~~~~y~~g~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~ 104 (389)
T PRK11788 34 RLSRDYFKGLNFLLN-----EQPDKAIDLFIEMLKVDPETVELHLALGNLFRR----RGEVDRAIRIHQNLLSRPDLTRE 104 (389)
T ss_pred hccHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCcHHHHHHHHHHHhcCCCCCHH
Confidence 445566667777666 4888899999988874 567788888888888 8889999998888877542
Q ss_pred --HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCC---
Q 005877 315 --YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGH--- 387 (672)
Q Consensus 315 --~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~--- 387 (672)
..++..||.+|.. .|++++|+.+|+++.+. .+..++..++.++.. .+++++|++.|+++++.+.
T Consensus 105 ~~~~~~~~La~~~~~-----~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~ 175 (389)
T PRK11788 105 QRLLALQELGQDYLK-----AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQ----EKDWQKAIDVAERLEKLGGDSL 175 (389)
T ss_pred HHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH----hchHHHHHHHHHHHHHhcCCcc
Confidence 2467788888875 56899999999988875 356788888888888 8899999999988877542
Q ss_pred ----HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---HHH
Q 005877 388 ----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELGY---EVA 458 (672)
Q Consensus 388 ----~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~---~~a 458 (672)
...+..+|.++.. .+++++|+.+|+++++..+ ..++..+|..+...|++++|+.+++++.+.+. ..+
T Consensus 176 ~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 176 RVEIAHFYCELAQQALA----RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV 251 (389)
T ss_pred hHHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH
Confidence 1244567777776 7899999999999887763 45677888889999999999999999886542 244
Q ss_pred HHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 005877 459 QSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG-NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ 537 (672)
Q Consensus 459 ~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~ 537 (672)
...++.+|.. .+++++|+..++++.+.. +......+|.++. ..+++++|+.+++++++.
T Consensus 252 ~~~l~~~~~~----------------~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~----~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 252 LPKLMECYQA----------------LGDEAEGLEFLRRALEEYPGADLLLALAQLLE----EQEGPEAAQALLREQLRR 311 (389)
T ss_pred HHHHHHHHHH----------------cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHH----HhCCHHHHHHHHHHHHHh
Confidence 5677777766 668888999888765532 2344578999998 889999999999999875
Q ss_pred C-CHHHHHH-HHHHHHcCCCCCCCHHHHHHHHHHHHh
Q 005877 538 S-NAQAMFN-LGYMHEHGQGLPLDLHLAKRYYDQALE 572 (672)
Q Consensus 538 ~-~~~a~~~-Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 572 (672)
. +...+.. ++.....+ -.++..+|+..+++.++
T Consensus 312 ~P~~~~~~~l~~~~~~~~--~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 312 HPSLRGFHRLLDYHLAEA--EEGRAKESLLLLRDLVG 346 (389)
T ss_pred CcCHHHHHHHHHHhhhcc--CCccchhHHHHHHHHHH
Confidence 2 2223332 33322111 03456666666665543
No 25
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.76 E-value=1.1e-15 Score=163.41 Aligned_cols=216 Identities=18% Similarity=0.110 Sum_probs=144.8
Q ss_pred hhHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCC-------HHHHHHHH
Q 005877 216 KGALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE-------PQSMEFLG 286 (672)
Q Consensus 216 ~~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~-------~~a~~~Lg 286 (672)
++.++...|++++|+..|+++.+. .+..++..++.++... +++++|++.++++++.+. ...+..+|
T Consensus 113 La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 113 LGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQE-----KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHh-----chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 344444444444444444444332 3556777777777766 478888888887766421 22445677
Q ss_pred HHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCC---HHHHHHHHHH
Q 005877 287 EIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE---AGGHYNLGVM 361 (672)
Q Consensus 287 ~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~ 361 (672)
.++.. .+++++|+.+|+++++. ++..+...+|.+|.. .|++++|+++|+++.+.+. ..++..++.+
T Consensus 188 ~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~ 258 (389)
T PRK11788 188 QQALA----RGDLDAARALLKKALAADPQCVRASILLGDLALA-----QGDYAAAIEALERVEEQDPEYLSEVLPKLMEC 258 (389)
T ss_pred HHHHh----CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHH
Confidence 77777 78888888888888764 356677788888875 5688888888888876532 3456778888
Q ss_pred HHcCCCchhcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHH-HHHHHHHh---
Q 005877 362 YYKGIGVKRDVKLACKYFLVAANAG-HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLS-RWALESYL--- 436 (672)
Q Consensus 362 y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~-~lg~~~~~--- 436 (672)
|.. .+++++|+..++++.+.. +......++.++.. .+++++|+.+++++++..|..... .+......
T Consensus 259 ~~~----~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~----~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~ 330 (389)
T PRK11788 259 YQA----LGDEAEGLEFLRRALEEYPGADLLLALAQLLEE----QEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAE 330 (389)
T ss_pred HHH----cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccC
Confidence 887 788888888888887643 23344777888776 788888888888888876544322 22222222
Q ss_pred cCCHHHHHHHHHHHHHc
Q 005877 437 KGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 437 ~g~~~~A~~~~~~a~~~ 453 (672)
.|+..+++..+++.++.
T Consensus 331 ~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 331 EGRAKESLLLLRDLVGE 347 (389)
T ss_pred CccchhHHHHHHHHHHH
Confidence 45788888888877654
No 26
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=4.9e-15 Score=149.06 Aligned_cols=383 Identities=15% Similarity=0.055 Sum_probs=275.8
Q ss_pred HHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCccc
Q 005877 127 RSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIE 204 (672)
Q Consensus 127 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~ 204 (672)
+-..|.-+.. .+.|++|+.||.+|++ ++.+--+.+.+-+|...|++++-++.-.++++..|+..
T Consensus 118 lK~~GN~~f~----~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~---------- 183 (606)
T KOG0547|consen 118 LKTKGNKFFR----NKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYV---------- 183 (606)
T ss_pred HHhhhhhhhh----cccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHH----------
Confidence 3355666665 8899999999999998 45588899999999999999999999999998766422
Q ss_pred chhcccCchhhhhHhhhccCChHHHHHHHHHHHHc-C--CHHHHHHHHHHHHhcCCCcccCHHHHHHHHH----------
Q 005877 205 PIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK-G--NAGAMYKIGLFYYFGLRGLRRDRTKALMWFS---------- 271 (672)
Q Consensus 205 ~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~-~--~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~---------- 271 (672)
.+....+..+..+|++++|+.-..-.+-. | +......+-+.+-.. -..++-+-|+
T Consensus 184 ------KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~------a~~ka~e~~k~nr~p~lPS~ 251 (606)
T KOG0547|consen 184 ------KALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQ------AMKKAKEKLKENRPPVLPSA 251 (606)
T ss_pred ------HHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHH------HHHHHHHhhcccCCCCCCcH
Confidence 12233555666777777776544432211 1 222211111111111 1111111111
Q ss_pred -------HHHH------------cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC------C---------HHH
Q 005877 272 -------KAAD------------KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ------L---------YSA 317 (672)
Q Consensus 272 -------~a~~------------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~------~---------~~a 317 (672)
.... .++..-...+-.++.. ....|.+|...+.+..... + +.+
T Consensus 252 ~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~---~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~a 328 (606)
T KOG0547|consen 252 TFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKG---LEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEA 328 (606)
T ss_pred HHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhh---CchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHH
Confidence 1100 0111112222222221 2456888888888776432 1 344
Q ss_pred HHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHH
Q 005877 318 YNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQ 393 (672)
Q Consensus 318 ~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~ 393 (672)
+..-|..++ ..||...|..-|..++..+ ++..+..+|.+|.+ ..+..+-.+.|.+|.+. .+++.++.
T Consensus 329 l~~~gtF~f-----L~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d----~~~~~~~~~~F~~A~~ldp~n~dvYyH 399 (606)
T KOG0547|consen 329 LLLRGTFHF-----LKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYAD----ENQSEKMWKDFNKAEDLDPENPDVYYH 399 (606)
T ss_pred HHHhhhhhh-----hcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhh----hhccHHHHHHHHHHHhcCCCCCchhHh
Confidence 555555555 3679999999999999886 34448899999999 99999999999999875 47899999
Q ss_pred HHHHHHcCCCccCCHHHHHHHHHHHHHcCChh--HHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHh
Q 005877 394 LAKMFHTGVGLKKNLHMATALYKLVAERGPWS--SLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKY 469 (672)
Q Consensus 394 L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~--a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~ 469 (672)
-|.++.- .+++++|+.-|++++...|.. ++..++...|+.+.++++...|+.+.+. ..+++.+-.|.+|..
T Consensus 400 RgQm~fl----L~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD- 474 (606)
T KOG0547|consen 400 RGQMRFL----LQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD- 474 (606)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh-
Confidence 9999986 899999999999999999755 5788999999999999999999999775 577788888888765
Q ss_pred CCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CC
Q 005877 470 GEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN--------EHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SN 539 (672)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--------~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~ 539 (672)
++++++|++.|.++++..+ +-.+++=|.+... ..+|+.+|++.+++|++. ..
T Consensus 475 ---------------qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q---wk~d~~~a~~Ll~KA~e~Dpkc 536 (606)
T KOG0547|consen 475 ---------------QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ---WKEDINQAENLLRKAIELDPKC 536 (606)
T ss_pred ---------------HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc---hhhhHHHHHHHHHHHHccCchH
Confidence 8899999999999977654 3445555555553 358999999999999886 45
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcC
Q 005877 540 AQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVD 574 (672)
Q Consensus 540 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 574 (672)
-.|.-.||.+-.. .++.++|+++|++++.+-
T Consensus 537 e~A~~tlaq~~lQ----~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 537 EQAYETLAQFELQ----RGKIDEAIELFEKSAQLA 567 (606)
T ss_pred HHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHH
Confidence 6899999999876 789999999999998764
No 27
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=9.9e-15 Score=146.10 Aligned_cols=306 Identities=17% Similarity=0.153 Sum_probs=227.7
Q ss_pred hhHhhhccCChHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC
Q 005877 216 KGALRKSRGEDDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGA 293 (672)
Q Consensus 216 ~~~~~~~~g~~~~Ai~~~~~aa~--~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~ 293 (672)
.|.++...|..++|+..+...+. +-+=.|+..|+.+.- +.+.+-..-.......+...-+.++.+|..
T Consensus 170 ~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit--------~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e-- 239 (559)
T KOG1155|consen 170 YGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELIT--------DIEILSILVVGLPSDMHWMKKFFLKKAYQE-- 239 (559)
T ss_pred HHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhc--------hHHHHHHHHhcCcccchHHHHHHHHHHHHH--
Confidence 56777788888888888888777 457788888887752 222222111111112344555667777776
Q ss_pred CCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHcC
Q 005877 294 GVERNYTKALEWLTHAARQQ---LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-----EAGGHYNLGVMYYKG 365 (672)
Q Consensus 294 g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g 365 (672)
....++++.-++.-+..| +.......|.+... +.|+++|+..|+...+++ +.+.+.|+ +|..
T Consensus 240 --l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~-----~rDfD~a~s~Feei~knDPYRl~dmdlySN~--LYv~- 309 (559)
T KOG1155|consen 240 --LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYN-----QRDFDQAESVFEEIRKNDPYRLDDMDLYSNV--LYVK- 309 (559)
T ss_pred --HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHhcCCCcchhHHHHhHH--HHHH-
Confidence 566777777777666665 34445566666664 459999999999988773 33333332 3322
Q ss_pred CCchhcHHHHHHHHHH-HH--HcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCH
Q 005877 366 IGVKRDVKLACKYFLV-AA--NAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDV 440 (672)
Q Consensus 366 ~g~~~~~~~A~~~~~~-A~--~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~ 440 (672)
.+ ...+.++-. .. ..-.++...-+|..|.- .++.++|+.||++|++.+| ..++..+|..|.++++.
T Consensus 310 ----~~-~skLs~LA~~v~~idKyR~ETCCiIaNYYSl----r~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt 380 (559)
T KOG1155|consen 310 ----ND-KSKLSYLAQNVSNIDKYRPETCCIIANYYSL----RSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNT 380 (559)
T ss_pred ----hh-hHHHHHHHHHHHHhccCCccceeeehhHHHH----HHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhccc
Confidence 12 222333322 22 23356777777877776 8999999999999999986 45788899999999999
Q ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHH--HhCCCHHHHHHHHHHHHh
Q 005877 441 GKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQA--SEQGNEHAALLIGDAYYY 516 (672)
Q Consensus 441 ~~A~~~~~~a~~~g--~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a--~~~~~~~a~~~lG~~y~~ 516 (672)
..|+..|+.|++.. +-.|++-||..|.- .+.+.=|+-+|++| .+|.|+..+..||.||.
T Consensus 381 ~AAi~sYRrAvdi~p~DyRAWYGLGQaYei----------------m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~- 443 (559)
T KOG1155|consen 381 HAAIESYRRAVDINPRDYRAWYGLGQAYEI----------------MKMHFYALYYFQKALELKPNDSRLWVALGECYE- 443 (559)
T ss_pred HHHHHHHHHHHhcCchhHHHHhhhhHHHHH----------------hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHH-
Confidence 99999999998886 77899999999988 67788899999987 45678889999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcC
Q 005877 517 GRGTQRDYERAAEAYMHARSQSNA--QAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVD 574 (672)
Q Consensus 517 g~g~~~d~~~A~~~~~~A~~~~~~--~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 574 (672)
+..+.++|+++|++|+..++. .+++.||.+|++ .+|..+|..+|++-++..
T Consensus 444 ---kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~----l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 444 ---KLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEE----LKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred ---HhccHHHHHHHHHHHHhccccchHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHH
Confidence 899999999999999987765 899999999998 899999999999999853
No 28
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.75 E-value=1.6e-13 Score=159.62 Aligned_cols=408 Identities=13% Similarity=0.044 Sum_probs=314.8
Q ss_pred hhhHHHHHHHHHHHHhCCC----hHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCHHHHH
Q 005877 105 VRVMEEATSEVESAAMEGD----PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAV 180 (672)
Q Consensus 105 ~~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~~~~~~~A~ 180 (672)
.|++++|++.|++....+. .-.+..+-..+.. .+....|..+++.... -+...+..|-..+...++.++|.
T Consensus 383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~----~g~~~eAl~lf~~M~~-pd~~Tyn~LL~a~~k~g~~e~A~ 457 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKK----QRAVKEAFRFAKLIRN-PTLSTFNMLMSVCASSQDIDGAL 457 (1060)
T ss_pred CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH----CCCHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCcCHHHHH
Confidence 5889999999999766653 1222233344544 6789999998887665 56778888888899999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCC
Q 005877 181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG---NAGAMYKIGLFYYFGLR 257 (672)
Q Consensus 181 ~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~---~~~a~~~Lg~~y~~~~~ 257 (672)
..|+++.+.+.. | +..+...+-..+.+.|+.++|.+.|+++.+.| |...+..|...|...
T Consensus 458 ~lf~~M~~~Gl~--------p-------D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~-- 520 (1060)
T PLN03218 458 RVLRLVQEAGLK--------A-------DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA-- 520 (1060)
T ss_pred HHHHHHHHcCCC--------C-------CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC--
Confidence 999998764311 0 11122345667889999999999999998875 778888898888887
Q ss_pred CcccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHcCC
Q 005877 258 GLRRDRTKALMWFSKAADKG---EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-----QLYSAYNGIGYLYVKGY 329 (672)
Q Consensus 258 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~ 329 (672)
+++++|++.|++..+.+ +...+..|-..|.. .++.++|.+.|++..+. .+...++.|-..|..
T Consensus 521 ---G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k----~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k-- 591 (1060)
T PLN03218 521 ---GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ----SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN-- 591 (1060)
T ss_pred ---cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH--
Confidence 49999999999987754 67888888888988 89999999999998752 366677777777875
Q ss_pred CCCcCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCC
Q 005877 330 GVEKKNYTKAKEYFEKAADNE---EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG---HQKAFYQLAKMFHTGVG 403 (672)
Q Consensus 330 g~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~L~~~y~~g~g 403 (672)
.|++++|.+.|++..+.+ ++..+..+...|.+ .+++++|.+.|.+..+.| +...+..+...|..
T Consensus 592 ---~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k----~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k--- 661 (1060)
T PLN03218 592 ---AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ----KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH--- 661 (1060)
T ss_pred ---CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---
Confidence 579999999999998876 56788888899988 899999999999998865 45667777777766
Q ss_pred ccCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCcccC
Q 005877 404 LKKNLHMATALYKLVAERG---PWSSLSRWALESYLKGDVGKAFLLYSRMAELG---YEVAQSNAAWILDKYGEGSMCMG 477 (672)
Q Consensus 404 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g---~~~a~~nla~~l~~~~~~~~~~~ 477 (672)
.++.++|..++++..+.+ +...+..+...|.+.|++++|...|++..+.| +...++.+...|.+
T Consensus 662 -~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k--------- 731 (1060)
T PLN03218 662 -AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE--------- 731 (1060)
T ss_pred -CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---------
Confidence 899999999999999887 34578888999999999999999999987765 56677777777776
Q ss_pred CCCCCCchHhHHHHHHHHHHHHhCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC---CHHHHHHH-HHH-
Q 005877 478 ESGFCTDAERHQCAHSLWWQASEQG---NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQS---NAQAMFNL-GYM- 549 (672)
Q Consensus 478 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~---~~~a~~~L-g~~- 549 (672)
.++.++|++++++..+.+ +...+..+-..+. ..+++++|.+.+.+..+.+ +......| |.+
T Consensus 732 -------~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~----k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 732 -------GNQLPKALEVLSEMKRLGLCPNTITYSILLVASE----RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred -------CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 778999999999766554 4556667777777 7899999999999998753 33322222 211
Q ss_pred --HHc-------------C--CCCCCCHHHHHHHHHHHHhcC
Q 005877 550 --HEH-------------G--QGLPLDLHLAKRYYDQALEVD 574 (672)
Q Consensus 550 --y~~-------------g--~g~~~d~~~A~~~~~~A~~~~ 574 (672)
|.. | .........|+.+|++.++.+
T Consensus 801 ~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~G 842 (1060)
T PLN03218 801 RRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAG 842 (1060)
T ss_pred HHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCC
Confidence 111 0 001233578999999999876
No 29
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.75 E-value=4.5e-15 Score=170.31 Aligned_cols=303 Identities=12% Similarity=-0.002 Sum_probs=156.3
Q ss_pred hhhHHHHHHHHHHHHhCC----ChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhccCCHH
Q 005877 105 VRVMEEATSEVESAAMEG----DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGG---NIQSKMAVAYTYLRQDMHD 177 (672)
Q Consensus 105 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~~~~~~ 177 (672)
.+++++|+..|+.....+ +...+..+-..+.. .++.+.|...+......| ++..+..|...|.+.|+.+
T Consensus 100 ~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~----~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~ 175 (697)
T PLN03081 100 CGRHREALELFEILEAGCPFTLPASTYDALVEACIA----LKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLI 175 (697)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHH
Confidence 466777777777754322 34555555555555 567777777777666532 4566677777777777777
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHh
Q 005877 178 KAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG---NAGAMYKIGLFYYF 254 (672)
Q Consensus 178 ~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~---~~~a~~~Lg~~y~~ 254 (672)
+|.+.|++..+. +..+...+-..+.+.|++++|++.|+++.+.| +...+..+-..+..
T Consensus 176 ~A~~lf~~m~~~-------------------~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 236 (697)
T PLN03081 176 DARRLFDEMPER-------------------NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236 (697)
T ss_pred HHHHHHhcCCCC-------------------CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc
Confidence 777777764220 11223345555667777777777777766554 23333333333332
Q ss_pred cCCCcccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC
Q 005877 255 GLRGLRRDRTKALMWFSKAADKG---EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGV 331 (672)
Q Consensus 255 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~ 331 (672)
. ++...+.+++....+.| +...+..|-.+|.+ .++.++|.+.|++..+ .+..+++.|...|..
T Consensus 237 ~-----~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k----~g~~~~A~~vf~~m~~-~~~vt~n~li~~y~~---- 302 (697)
T PLN03081 237 L-----GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSK----CGDIEDARCVFDGMPE-KTTVAWNSMLAGYAL---- 302 (697)
T ss_pred C-----CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHH----CCCHHHHHHHHHhCCC-CChhHHHHHHHHHHh----
Confidence 2 24455555544444432 33444444555554 4555555555544322 234445555444443
Q ss_pred CcCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCcc
Q 005877 332 EKKNYTKAKEYFEKAADNE---EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG---HQKAFYQLAKMFHTGVGLK 405 (672)
Q Consensus 332 ~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~L~~~y~~g~g~~ 405 (672)
.|+.++|++.|++..+.+ +...+..+...+.+ .+++++|.+.+....+.| +...+..|..+|.. .
T Consensus 303 -~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k----~ 373 (697)
T PLN03081 303 -HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR----LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK----W 373 (697)
T ss_pred -CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH----C
Confidence 335555555555544433 33344444444444 445555555555544433 22334444444444 4
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877 406 KNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (672)
Q Consensus 406 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g 454 (672)
|+.++|...|++..+ .+..++..+...|...|+.++|+..|++..+.|
T Consensus 374 G~~~~A~~vf~~m~~-~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g 421 (697)
T PLN03081 374 GRMEDARNVFDRMPR-KNLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421 (697)
T ss_pred CCHHHHHHHHHhCCC-CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 455555555544432 123334444444555555555555555544443
No 30
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.75 E-value=1.5e-14 Score=165.99 Aligned_cols=402 Identities=10% Similarity=-0.031 Sum_probs=327.7
Q ss_pred hhhHHHHHHHHHHHHhC---CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCHHHHHH
Q 005877 105 VRVMEEATSEVESAAME---GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVK 181 (672)
Q Consensus 105 ~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~~~~~~~A~~ 181 (672)
.++++.|.+++...... .++..+..|...|.. .++.++|...|.+..++ +..++..|...|.+.|++++|+.
T Consensus 136 ~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k----~g~~~~A~~lf~~m~~~-~~~t~n~li~~~~~~g~~~~A~~ 210 (697)
T PLN03081 136 LKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVK----CGMLIDARRLFDEMPER-NLASWGTIIGGLVDAGNYREAFA 210 (697)
T ss_pred CCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhc----CCCHHHHHHHHhcCCCC-CeeeHHHHHHHHHHCcCHHHHHH
Confidence 56788899998886554 357778888888888 89999999999987654 66788999999999999999999
Q ss_pred HHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCC
Q 005877 182 LYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG---NAGAMYKIGLFYYFGLRG 258 (672)
Q Consensus 182 ~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~---~~~a~~~Lg~~y~~~~~~ 258 (672)
.|++..+.+.. | ...+...+-..+...|..+.+.+++..+.+.| +...+..|...|...
T Consensus 211 lf~~M~~~g~~--------p-------~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~--- 272 (697)
T PLN03081 211 LFREMWEDGSD--------A-------EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC--- 272 (697)
T ss_pred HHHHHHHhCCC--------C-------ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHC---
Confidence 99998764311 1 11122234455677899999999998888776 677788888999887
Q ss_pred cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCC
Q 005877 259 LRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ---LYSAYNGIGYLYVKGYGVEKKN 335 (672)
Q Consensus 259 ~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~ 335 (672)
++.++|.+.|++.. ..+..++..|...|.. .++.++|+..|++..+.| +...+..+...+.. .++
T Consensus 273 --g~~~~A~~vf~~m~-~~~~vt~n~li~~y~~----~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~-----~g~ 340 (697)
T PLN03081 273 --GDIEDARCVFDGMP-EKTTVAWNSMLAGYAL----HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR-----LAL 340 (697)
T ss_pred --CCHHHHHHHHHhCC-CCChhHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-----ccc
Confidence 49999999998764 4578889999999998 899999999999988765 66778888887875 569
Q ss_pred HHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHH
Q 005877 336 YTKAKEYFEKAADNE---EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMAT 412 (672)
Q Consensus 336 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~ 412 (672)
.++|.+.+....+.+ +...+..|..+|.+ .|+.++|.+.|++..+. +..+++.+...|.. .++.++|+
T Consensus 341 ~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k----~G~~~~A~~vf~~m~~~-d~~t~n~lI~~y~~----~G~~~~A~ 411 (697)
T PLN03081 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSK----WGRMEDARNVFDRMPRK-NLISWNALIAGYGN----HGRGTKAV 411 (697)
T ss_pred hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH----CCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHH----cCCHHHHH
Confidence 999999999999876 56788899999999 89999999999987654 56778888877776 89999999
Q ss_pred HHHHHHHHcC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHHhCCCCcccCCCCCCCch
Q 005877 413 ALYKLVAERG---PWSSLSRWALESYLKGDVGKAFLLYSRMAEL-G---YEVAQSNAAWILDKYGEGSMCMGESGFCTDA 485 (672)
Q Consensus 413 ~~~~~a~~~~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~-g---~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~ 485 (672)
++|++..+.+ +..++..+...+...|+.++|..+|+...+. | +...++.+..+|.+ .
T Consensus 412 ~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r----------------~ 475 (697)
T PLN03081 412 EMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR----------------E 475 (697)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh----------------c
Confidence 9999998877 2345677777889999999999999999764 4 23345556667666 7
Q ss_pred HhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHH
Q 005877 486 ERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLA 563 (672)
Q Consensus 486 ~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A 563 (672)
+++++|.+++++.-...+...+..|-..+. ..++++.|...+++..+. ++...+..|..+|.. .|+.++|
T Consensus 476 G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~----~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~----~G~~~~A 547 (697)
T PLN03081 476 GLLDEAYAMIRRAPFKPTVNMWAALLTACR----IHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNS----SGRQAEA 547 (697)
T ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHH----HcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHh----CCCHHHH
Confidence 789999999998655567777888888888 789999999999998764 566778888999887 8999999
Q ss_pred HHHHHHHHhcC
Q 005877 564 KRYYDQALEVD 574 (672)
Q Consensus 564 ~~~~~~A~~~~ 574 (672)
.+.+++..+.+
T Consensus 548 ~~v~~~m~~~g 558 (697)
T PLN03081 548 AKVVETLKRKG 558 (697)
T ss_pred HHHHHHHHHcC
Confidence 99999988775
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=3.8e-15 Score=147.94 Aligned_cols=400 Identities=15% Similarity=0.118 Sum_probs=277.3
Q ss_pred hhhHHHHHHHHHHHHh----CCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC-------CCHHHHHHHHHHHhcc
Q 005877 105 VRVMEEATSEVESAAM----EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG-------GNIQSKMAVAYTYLRQ 173 (672)
Q Consensus 105 ~~~~~~A~~~~~~a~~----~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~-------~~~~a~~~Lg~~y~~~ 173 (672)
..-+.+|+..|+-.+. ++......++|.+|.. .+++.+|+++|+-|+++ -.+..+.++|..+.+.
T Consensus 214 ndm~~ealntyeiivknkmf~nag~lkmnigni~~k----kr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~ 289 (840)
T KOG2003|consen 214 NDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFK----KREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQA 289 (840)
T ss_pred hHHHHHHhhhhhhhhcccccCCCceeeeeecceeee----hhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEec
Confidence 4456788888877443 2445566788888888 88888888888888773 1346677788888888
Q ss_pred CCHHHHHHHHHHHHHHHHhhh----------hc--------------c-CCCCccc-chhcccCchhhh----------h
Q 005877 174 DMHDKAVKLYAELAEIAVNSF----------LI--------------S-KDSPVIE-PIRIHNGAEENK----------G 217 (672)
Q Consensus 174 ~~~~~A~~~y~~a~~~~~~~~----------~~--------------~-~~~~~~~-~~~l~~~~~~~~----------~ 217 (672)
|.|+.||..|+.+++..|+-. .. . |.-+.-. .+.-.+....++ -
T Consensus 290 gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk 369 (840)
T KOG2003|consen 290 GQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLK 369 (840)
T ss_pred ccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHH
Confidence 888888888887777655311 00 0 0000000 000011111000 0
Q ss_pred Hh-hhccCChHHHHHHHHHHHHc--------------------CCHH----HHHHHHHHHHhcCCCcccCHHHHHHHHHH
Q 005877 218 AL-RKSRGEDDEAFQILEYQAQK--------------------GNAG----AMYKIGLFYYFGLRGLRRDRTKALMWFSK 272 (672)
Q Consensus 218 ~~-~~~~g~~~~Ai~~~~~aa~~--------------------~~~~----a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~ 272 (672)
.+ .....+-+++|..--+.+.+ .+++ .-.+-+.-|+.. +|++.|++.++-
T Consensus 370 ~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~-----~d~~~aieilkv 444 (840)
T KOG2003|consen 370 NMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKN-----GDIEGAIEILKV 444 (840)
T ss_pred HHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhc-----cCHHHHHHHHHH
Confidence 00 11122334444433332211 0111 112223445555 499999999887
Q ss_pred HHHcCC---HHHHHHHHHHHH-cCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Q 005877 273 AADKGE---PQSMEFLGEIYA-RGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKA 346 (672)
Q Consensus 273 a~~~~~---~~a~~~Lg~~y~-~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a 346 (672)
.-++++ +.+..+|..++. .| -.++..|-.|-..++..+ ++.++.+-|.+-+. .||+++|.++|+.|
T Consensus 445 ~~~kdnk~~saaa~nl~~l~flqg---gk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~-----ngd~dka~~~ykea 516 (840)
T KOG2003|consen 445 FEKKDNKTASAAANNLCALRFLQG---GKDFADAQQYADIALNIDRYNAAALTNKGNIAFA-----NGDLDKAAEFYKEA 516 (840)
T ss_pred HHhccchhhHHHhhhhHHHHHHhc---ccchhHHHHHHHHHhcccccCHHHhhcCCceeee-----cCcHHHHHHHHHHH
Confidence 655543 334556655544 33 468899999999998765 88899998887764 57999999999999
Q ss_pred HhCC--CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHH--HHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC
Q 005877 347 ADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVA--ANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG 422 (672)
Q Consensus 347 ~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A--~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~ 422 (672)
+..+ -.++.+++|..+.. .++.++|+++|.+. +-.++.+.++.++.+|+. ..|..+|++||.++...-
T Consensus 517 l~ndasc~ealfniglt~e~----~~~ldeald~f~klh~il~nn~evl~qianiye~----led~aqaie~~~q~~sli 588 (840)
T KOG2003|consen 517 LNNDASCTEALFNIGLTAEA----LGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL----LEDPAQAIELLMQANSLI 588 (840)
T ss_pred HcCchHHHHHHHHhcccHHH----hcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----hhCHHHHHHHHHHhcccC
Confidence 9876 47899999999999 99999999999884 567899999999999997 899999999999997765
Q ss_pred --ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHH
Q 005877 423 --PWSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQA 498 (672)
Q Consensus 423 --~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 498 (672)
+|..+..||..|-+.||..+|+.++-.+..- -+.+..-+||-.|.. ..-.++|+.+++++
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyid----------------tqf~ekai~y~eka 652 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID----------------TQFSEKAINYFEKA 652 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHh----------------hHHHHHHHHHHHHH
Confidence 5678899999999999999999998777443 355555566665544 55689999999997
Q ss_pred HhCCC--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHH
Q 005877 499 SEQGN--EHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYM 549 (672)
Q Consensus 499 ~~~~~--~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~ 549 (672)
+-..+ ..-...++.|+. ..|+|++|...|+..-. +.+.+.+-.|-.+
T Consensus 653 aliqp~~~kwqlmiasc~r----rsgnyqka~d~yk~~hrkfpedldclkflvri 703 (840)
T KOG2003|consen 653 ALIQPNQSKWQLMIASCFR----RSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRI 703 (840)
T ss_pred HhcCccHHHHHHHHHHHHH----hcccHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 55443 444568899999 89999999999998754 3666666665544
No 32
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.73 E-value=7.9e-13 Score=153.98 Aligned_cols=373 Identities=13% Similarity=0.036 Sum_probs=303.1
Q ss_pred cCCHHHHHHHHHHHHhCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhh
Q 005877 141 ERNKGKAFLYHHFAAEGGN----IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENK 216 (672)
Q Consensus 141 ~~d~~~A~~~~~~A~~~~~----~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 216 (672)
.++.++|...++.....|. ......+-..+...+..++|+.+++.... | +..+...+
T Consensus 383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~------------p-------d~~Tyn~L 443 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN------------P-------TLSTFNML 443 (1060)
T ss_pred CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC------------C-------CHHHHHHH
Confidence 6789999999998877653 22333455567778999999998876532 1 11122234
Q ss_pred hHhhhccCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Q 005877 217 GALRKSRGEDDEAFQILEYQAQKG---NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG---EPQSMEFLGEIYA 290 (672)
Q Consensus 217 ~~~~~~~g~~~~Ai~~~~~aa~~~---~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~ 290 (672)
-..+...|+.++|...++++.+.| +...+..|-..|... ++.++|.+.|++..+.| +...+..|-..|.
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~-----G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS-----GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-----cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 556778899999999999998876 678888888888877 49999999999998764 6788899999999
Q ss_pred cCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHH
Q 005877 291 RGAGVERNYTKALEWLTHAARQQ---LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-----EEAGGHYNLGVMY 362 (672)
Q Consensus 291 ~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y 362 (672)
+ .+++++|+..|++..+.+ +...++.|-..|.. .++.++|.+.|.+..+. .+...+..|-.+|
T Consensus 519 k----~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k-----~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay 589 (1060)
T PLN03218 519 R----AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ-----SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589 (1060)
T ss_pred H----CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 8 899999999999998765 67788888888875 56999999999998752 2566788888888
Q ss_pred HcCCCchhcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHh
Q 005877 363 YKGIGVKRDVKLACKYFLVAANAG---HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG---PWSSLSRWALESYL 436 (672)
Q Consensus 363 ~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 436 (672)
.+ .+++++|.+.|++..+.+ +...+..+...|.. .++.++|+.+|++..+.+ +...+..+...+..
T Consensus 590 ~k----~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k----~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k 661 (1060)
T PLN03218 590 AN----AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ----KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH 661 (1060)
T ss_pred HH----CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 88 899999999999998876 45777778877876 899999999999999887 33467788888999
Q ss_pred cCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhC---CCHHHHHHH
Q 005877 437 KGDVGKAFLLYSRMAELG---YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ---GNEHAALLI 510 (672)
Q Consensus 437 ~g~~~~A~~~~~~a~~~g---~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~l 510 (672)
.|++++|...++++.+.| +....+.+...|.+ .+++++|+++|+...+. .+...++.|
T Consensus 662 ~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k----------------~G~~eeA~~lf~eM~~~g~~PdvvtyN~L 725 (1060)
T PLN03218 662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN----------------AKNWKKALELYEDIKSIKLRPTVSTMNAL 725 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----------------CCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 999999999999999887 56777788888877 77899999999976553 357778899
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877 511 GDAYYYGRGTQRDYERAAEAYMHARSQ---SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK 578 (672)
Q Consensus 511 G~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 578 (672)
-..|. ..+++++|.+.|++..+. .+...+..|-..+.+ .++.++|.++++++.+.+....
T Consensus 726 I~gy~----k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k----~G~le~A~~l~~~M~k~Gi~pd 788 (1060)
T PLN03218 726 ITALC----EGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER----KDDADVGLDLLSQAKEDGIKPN 788 (1060)
T ss_pred HHHHH----HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHcCCCCC
Confidence 99998 889999999999997764 366667777666665 8899999999999998864433
No 33
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.6e-13 Score=140.98 Aligned_cols=428 Identities=16% Similarity=0.108 Sum_probs=308.5
Q ss_pred hhhHHHHHHHHHHHHhC-CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHH-HhCCCHHHHHHHHHHHhccCCHHHHHHH
Q 005877 105 VRVMEEATSEVESAAME-GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFA-AEGGNIQSKMAVAYTYLRQDMHDKAVKL 182 (672)
Q Consensus 105 ~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A-~~~~~~~a~~~Lg~~y~~~~~~~~A~~~ 182 (672)
...|.-|.-+-++.+.. ++|.-.+.+|.+|.. .+++.+|....+.- .+..+....+.++.++...++++.|...
T Consensus 29 q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~----~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~v 104 (611)
T KOG1173|consen 29 QHRYKTALFWADKVAGLTNDPADIYWLAQVLYL----GRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLV 104 (611)
T ss_pred HHhhhHHHHHHHHHHhccCChHHHHHHHHHHHh----hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999994443 889999999999988 77888888777654 3467788899999999999999999888
Q ss_pred HHHHHHHHHhhhhccCC--CCcc------c--chhcccCchhhhhHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHH
Q 005877 183 YAELAEIAVNSFLISKD--SPVI------E--PIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGL 250 (672)
Q Consensus 183 y~~a~~~~~~~~~~~~~--~~~~------~--~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~ 250 (672)
..+. .+....+...+. ...+ + ...+...+-.-.|.+|....+.++|-..|.++... ..-++...|-.
T Consensus 105 l~~~-~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs 183 (611)
T KOG1173|consen 105 LGRG-HVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVS 183 (611)
T ss_pred hccc-chhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 7744 221111110000 0000 0 01111122234677788888899999999987544 35555554433
Q ss_pred HHHhcC-------CC-----ccc-CHHHHHHHHHHHH-H------------------cCCHHHHHHHHHHHHcCCCCcCC
Q 005877 251 FYYFGL-------RG-----LRR-DRTKALMWFSKAA-D------------------KGEPQSMEFLGEIYARGAGVERN 298 (672)
Q Consensus 251 ~y~~~~-------~~-----~~~-~~~~A~~~~~~a~-~------------------~~~~~a~~~Lg~~y~~g~g~~~~ 298 (672)
..+-.. .+ +.+ +.+.-...|+--. + ..++......+..+.. ..+
T Consensus 184 ~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~----~c~ 259 (611)
T KOG1173|consen 184 AHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYY----GCR 259 (611)
T ss_pred HHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHH----cCh
Confidence 332221 00 001 1111122222110 0 1345666677777777 788
Q ss_pred HHHHHHHHHHHHHcC--CHH-HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHH
Q 005877 299 YTKALEWLTHAARQQ--LYS-AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVK 373 (672)
Q Consensus 299 ~~~A~~~~~~a~~~~--~~~-a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~ 373 (672)
+.+-.+..+..++.. ++. --..||-++.. ++..+=...-.+.++. ..+-+++.+|..|.. .+.+.
T Consensus 260 f~~c~kit~~lle~dpfh~~~~~~~ia~l~el------~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~----i~k~s 329 (611)
T KOG1173|consen 260 FKECLKITEELLEKDPFHLPCLPLHIACLYEL------GKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLM----IGKYS 329 (611)
T ss_pred HHHHHHHhHHHHhhCCCCcchHHHHHHHHHHh------cccchHHHHHHHHHHhCCCCCcchhhHHHHHHH----hcCcH
Confidence 999999999888864 333 34578866654 3433333333444443 578899999999999 89999
Q ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005877 374 LACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSR 449 (672)
Q Consensus 374 ~A~~~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~ 449 (672)
+|..+|.||...+ ...+|..+|..+.. .+..++|+..|..|.+.-+ -...+.+|..|...++++-|-.+|.+
T Consensus 330 eARry~SKat~lD~~fgpaWl~fghsfa~----e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 330 EARRYFSKATTLDPTFGPAWLAFGHSFAG----EGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred HHHHHHHHHhhcCccccHHHHHHhHHhhh----cchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999998765 56888888888876 9999999999999998754 45788899999999999999999999
Q ss_pred HHH--cCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhC----CC-----HHHHHHHHHHHHhCC
Q 005877 450 MAE--LGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ----GN-----EHAALLIGDAYYYGR 518 (672)
Q Consensus 450 a~~--~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----~~-----~~a~~~lG~~y~~g~ 518 (672)
|.. +.++...+.+|.+... .+.+.+|+.+|+.++.. .+ ...+.+||.+|.
T Consensus 406 A~ai~P~Dplv~~Elgvvay~----------------~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R--- 466 (611)
T KOG1173|consen 406 ALAIAPSDPLVLHELGVVAYT----------------YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR--- 466 (611)
T ss_pred HHhcCCCcchhhhhhhheeeh----------------HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH---
Confidence 954 4688888888887766 77899999999977522 22 344789999999
Q ss_pred CCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcc
Q 005877 519 GTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKL 579 (672)
Q Consensus 519 g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~ 579 (672)
..+.+.+|+.+|++|+.. .++..+-.+|++|.. .|++++|+.+|.||+-++|+...
T Consensus 467 -kl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~l----lgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 467 -KLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHL----LGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred -HHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH----hcChHHHHHHHHHHHhcCCccHH
Confidence 899999999999999774 789999999999987 99999999999999999999743
No 34
>PLN03077 Protein ECB2; Provisional
Probab=99.70 E-value=1.7e-13 Score=161.06 Aligned_cols=428 Identities=13% Similarity=0.014 Sum_probs=266.1
Q ss_pred cCCCCCCcccccCCCCCCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhCC---ChHHHHHHHHHhhcCCcccC
Q 005877 66 NLDPGSWSPVFEPSIDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEG---DPHARSVLGFLYGMGMMRER 142 (672)
Q Consensus 66 ~~~~~~a~~~~~~~~~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~G~g~~~ 142 (672)
.++++.|..+|++...++ .-.+..+-..+. ..+++++|+..|++....| +...+..+-..+.. .+
T Consensus 235 ~g~~~~A~~lf~~m~~~d-~~s~n~li~~~~-------~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~----~g 302 (857)
T PLN03077 235 CGDVVSARLVFDRMPRRD-CISWNAMISGYF-------ENGECLEGLELFFTMRELSVDPDLMTITSVISACEL----LG 302 (857)
T ss_pred CCCHHHHHHHHhcCCCCC-cchhHHHHHHHH-------hCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cC
Confidence 456777777777765443 222222222222 2578899999999865543 33344444444444 77
Q ss_pred CHHHHHHHHHHHHhCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHh
Q 005877 143 NKGKAFLYHHFAAEGG---NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGAL 219 (672)
Q Consensus 143 d~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 219 (672)
+.+.|.+.+....+.| +...+..|...|.+.|+.++|.+.|++.... +..++..+...
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-------------------d~~s~n~li~~ 363 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK-------------------DAVSWTAMISG 363 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCC-------------------CeeeHHHHHHH
Confidence 8888888888888754 6788888999999999999999998875321 11234456677
Q ss_pred hhccCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCC
Q 005877 220 RKSRGEDDEAFQILEYQAQKG---NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG---EPQSMEFLGEIYARGA 293 (672)
Q Consensus 220 ~~~~g~~~~Ai~~~~~aa~~~---~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~ 293 (672)
+.+.|++++|++.|+++.+.| +...+..+-..+... ++.++|.+.+..+.+.| +...+..|-.+|.+
T Consensus 364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~-----g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k-- 436 (857)
T PLN03077 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL-----GDLDVGVKLHELAERKGLISYVVVANALIEMYSK-- 436 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhcc-----chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH--
Confidence 888899999999999876664 344444444455444 48889999998888865 46677888888888
Q ss_pred CCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--CHHHHHH--------------
Q 005877 294 GVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYN-------------- 357 (672)
Q Consensus 294 g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~~~a~~~-------------- 357 (672)
.++.++|.+.|++..+. +..+++.+-..|.. .++.++|+.+|++..+.- +...+..
T Consensus 437 --~g~~~~A~~vf~~m~~~-d~vs~~~mi~~~~~-----~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~ 508 (857)
T PLN03077 437 --CKCIDKALEVFHNIPEK-DVISWTSIIAGLRL-----NNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCG 508 (857)
T ss_pred --cCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHH-----CCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHh
Confidence 88899999988876543 45567777666664 458888888888876532 2222222
Q ss_pred ---------------------HHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHH
Q 005877 358 ---------------------LGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYK 416 (672)
Q Consensus 358 ---------------------Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~ 416 (672)
|-.+|.+ .|+.++|...|... ..+..++..+...|.. .|+.++|+.+|+
T Consensus 509 ~~i~~~~~~~g~~~~~~~~naLi~~y~k----~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~----~G~~~~A~~lf~ 578 (857)
T PLN03077 509 KEIHAHVLRTGIGFDGFLPNALLDLYVR----CGRMNYAWNQFNSH--EKDVVSWNILLTGYVA----HGKGSMAVELFN 578 (857)
T ss_pred HHHHHHHHHhCCCccceechHHHHHHHH----cCCHHHHHHHHHhc--CCChhhHHHHHHHHHH----cCCHHHHHHHHH
Confidence 2234444 55666666666654 3455555555555554 566666666666
Q ss_pred HHHHcC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHH-HcC---CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHH
Q 005877 417 LVAERG---PWSSLSRWALESYLKGDVGKAFLLYSRMA-ELG---YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQ 489 (672)
Q Consensus 417 ~a~~~~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~-~~g---~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~ 489 (672)
+..+.+ +..++..+-..+...|+.++|..+|+... +.| +......+..+|.+ .++++
T Consensus 579 ~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r----------------~G~~~ 642 (857)
T PLN03077 579 RMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR----------------AGKLT 642 (857)
T ss_pred HHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh----------------CCCHH
Confidence 666554 12234444455566666666666666665 333 22334445555554 55666
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 005877 490 CAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYY 567 (672)
Q Consensus 490 ~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 567 (672)
+|.+++++..-..++..+..|=..+. ..++.+.|....++..+ ++++..+..|+.+|.. .|+.++|.+..
T Consensus 643 eA~~~~~~m~~~pd~~~~~aLl~ac~----~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~----~g~~~~a~~vr 714 (857)
T PLN03077 643 EAYNFINKMPITPDPAVWGALLNACR----IHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD----AGKWDEVARVR 714 (857)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHH----HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH----CCChHHHHHHH
Confidence 66666665432333444444444444 45666666555555543 3556666666666655 56666666666
Q ss_pred HHHHhc
Q 005877 568 DQALEV 573 (672)
Q Consensus 568 ~~A~~~ 573 (672)
+...+.
T Consensus 715 ~~M~~~ 720 (857)
T PLN03077 715 KTMREN 720 (857)
T ss_pred HHHHHc
Confidence 666544
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=9.7e-14 Score=139.08 Aligned_cols=343 Identities=15% Similarity=0.088 Sum_probs=225.4
Q ss_pred ChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCC
Q 005877 123 DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDS 200 (672)
Q Consensus 123 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~ 200 (672)
++...|..|.++.. .+...+|+..+..++. |=+-.|+..|+.+.....+...-+ ...
T Consensus 163 D~fllYL~Gvv~k~----~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~-------~~l---------- 221 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKE----LGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILV-------VGL---------- 221 (559)
T ss_pred hhHHHHHHHHHHHh----hchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHH-------hcC----------
Confidence 34555566666655 5666666666666665 555566666655543211110000 000
Q ss_pred CcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcC
Q 005877 201 PVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG---NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG 277 (672)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~---~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~ 277 (672)
+.- ..--...-+..++....+.++++.-++..+..| ++-.....|.+.+.. +|+++|+..|+...+.+
T Consensus 222 ~~~----~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~-----rDfD~a~s~Feei~knD 292 (559)
T KOG1155|consen 222 PSD----MHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQ-----RDFDQAESVFEEIRKND 292 (559)
T ss_pred ccc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHhcC
Confidence 000 000001124445555567788888888887775 455556667777776 59999999999987752
Q ss_pred -----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC
Q 005877 278 -----EPQSMEFLGEIYARGAGVERNYTKALEWLTHAA---RQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN 349 (672)
Q Consensus 278 -----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~---~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~ 349 (672)
+-..+.+. +|. . +-...+.++-+-+ ++=.++.+.-+|..|.. +++.++|+.||++|++.
T Consensus 293 PYRl~dmdlySN~--LYv-----~-~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSl-----r~eHEKAv~YFkRALkL 359 (559)
T KOG1155|consen 293 PYRLDDMDLYSNV--LYV-----K-NDKSKLSYLAQNVSNIDKYRPETCCIIANYYSL-----RSEHEKAVMYFKRALKL 359 (559)
T ss_pred CCcchhHHHHhHH--HHH-----H-hhhHHHHHHHHHHHHhccCCccceeeehhHHHH-----HHhHHHHHHHHHHHHhc
Confidence 11221111 122 1 2223334433322 22356777777877774 45888888888888877
Q ss_pred C--CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChh
Q 005877 350 E--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS 425 (672)
Q Consensus 350 ~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~ 425 (672)
+ ...++.-+|.=|.. .++...|++.|++|++.+ +-.|||-||.+|.. .+-..=|+-||++|.+..|.+
T Consensus 360 Np~~~~aWTLmGHEyvE----mKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei----m~Mh~YaLyYfqkA~~~kPnD 431 (559)
T KOG1155|consen 360 NPKYLSAWTLMGHEYVE----MKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI----MKMHFYALYYFQKALELKPND 431 (559)
T ss_pred CcchhHHHHHhhHHHHH----hcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH----hcchHHHHHHHHHHHhcCCCc
Confidence 4 67788888888888 888888888888888755 55788888888886 777788888888888877654
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh-
Q 005877 426 --SLSRWALESYLKGDVGKAFLLYSRMAELGYE--VAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE- 500 (672)
Q Consensus 426 --a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~--~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~- 500 (672)
.+..||.+|.+.++.++|+..|..|+..|+. .++..||.++.+ .++.++|..+|++-++
T Consensus 432 sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~----------------l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 432 SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEE----------------LKDLNEAAQYYEKYVEV 495 (559)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHH----------------HHhHHHHHHHHHHHHHH
Confidence 4566788888888888888888888888765 788888888887 7778888888887544
Q ss_pred ------CC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 005877 501 ------QG--NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS 536 (672)
Q Consensus 501 ------~~--~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~ 536 (672)
.+ -..+...|+..+. ..+|+++|..|..++..
T Consensus 496 ~~~eg~~~~~t~ka~~fLA~~f~----k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 496 SELEGEIDDETIKARLFLAEYFK----KMKDFDEASYYATLVLK 535 (559)
T ss_pred HHhhcccchHHHHHHHHHHHHHH----hhcchHHHHHHHHHHhc
Confidence 12 2456677888888 88899988887776654
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=5.8e-15 Score=154.56 Aligned_cols=292 Identities=15% Similarity=0.126 Sum_probs=228.3
Q ss_pred HHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHHHH
Q 005877 243 GAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAY 318 (672)
Q Consensus 243 ~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~ 318 (672)
..+..+|..|... ..-+..+|+..|++.-. .+.......+|..|+. ..+|++|.++|+.+-+.. .....
T Consensus 318 ~llr~~~~~~~~~---s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFE----l~~Y~~a~~~F~~~r~~~p~rv~~m 390 (638)
T KOG1126|consen 318 ELLRGLGEGYRSL---SQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFE----LIEYDQAERIFSLVRRIEPYRVKGM 390 (638)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhccccccch
Confidence 3444455554432 12377899999999322 3566888999999999 999999999999987653 11111
Q ss_pred HHHHHHHHcCCCCCcCCHHHHHHHHHH-HHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--CHHHHHH
Q 005877 319 NGIGYLYVKGYGVEKKNYTKAKEYFEK-AADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQ 393 (672)
Q Consensus 319 ~~Lg~~y~~g~g~~~~~~~~A~~~~~~-a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~ 393 (672)
.-...+.-+ .+ -+-++.++-+ .++. ..|++|.-+|.||.- ++|++.|+++|++|++.+ ..-++.-
T Consensus 391 eiyST~LWH----Lq--~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL----Qkdh~~Aik~f~RAiQldp~faYayTL 460 (638)
T KOG1126|consen 391 EIYSTTLWH----LQ--DEVALSYLAQDLIDTDPNSPESWCALGNCFSL----QKDHDTAIKCFKRAIQLDPRFAYAYTL 460 (638)
T ss_pred hHHHHHHHH----HH--hhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh----hhHHHHHHHHHHHhhccCCccchhhhh
Confidence 112222211 12 2334444433 3333 589999999999998 899999999999999865 4566667
Q ss_pred HHHHHHcCCCccCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh
Q 005877 394 LAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRMAELG--YEVAQSNAAWILDKY 469 (672)
Q Consensus 394 L~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g--~~~a~~nla~~l~~~ 469 (672)
+|.=+.. ..++++|..+|++|+... +-.+++-+|.+|.++++++.|..+|++|++.+ +..-...++.++.+
T Consensus 461 lGhE~~~----~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~- 535 (638)
T KOG1126|consen 461 LGHESIA----TEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ- 535 (638)
T ss_pred cCChhhh----hHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH-
Confidence 7755544 889999999999999887 46799999999999999999999999998776 66667788999888
Q ss_pred CCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHH
Q 005877 470 GEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFN 545 (672)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~ 545 (672)
.++.++|+.++++|+..+ ++...|..|.+++ ..+++++|...+++-.+ +++...++-
T Consensus 536 ---------------~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~----~~~~~~eal~~LEeLk~~vP~es~v~~l 596 (638)
T KOG1126|consen 536 ---------------LKRKDKALQLYEKAIHLDPKNPLCKYHRASILF----SLGRYVEALQELEELKELVPQESSVFAL 596 (638)
T ss_pred ---------------hhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH----hhcchHHHHHHHHHHHHhCcchHHHHHH
Confidence 788999999999997654 6888899999999 89999999999998655 688999999
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcc
Q 005877 546 LGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKL 579 (672)
Q Consensus 546 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~ 579 (672)
||.+|.. .|+.+.|+..|--|.+++|...-
T Consensus 597 lgki~k~----~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 597 LGKIYKR----LGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHH----HccchHHHHhhHHHhcCCCccch
Confidence 9999987 89999999999999999988654
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=5.5e-15 Score=154.75 Aligned_cols=294 Identities=17% Similarity=0.164 Sum_probs=230.4
Q ss_pred HHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCc
Q 005877 125 HARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPV 202 (672)
Q Consensus 125 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~ 202 (672)
+.+..+|..|..- ..-+..+|+..|.+.-. .+-...+..+|..|....+|++|.++|+.+-+..|-
T Consensus 318 ~llr~~~~~~~~~--s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~---------- 385 (638)
T KOG1126|consen 318 ELLRGLGEGYRSL--SQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY---------- 385 (638)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----------
Confidence 3444555555430 03356789999998433 355688888999999999999999999988765432
Q ss_pred ccchhcccCchhhhhHhhhccCChHHHHHHHHH-HH--HcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--C
Q 005877 203 IEPIRIHNGAEENKGALRKSRGEDDEAFQILEY-QA--QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--G 277 (672)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~-aa--~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~ 277 (672)
++. ++...--.+|.-+ .+-++.++-+ .+ ++..|+++..+|.+|.-+ +|++.|++.|++|+.. +
T Consensus 386 ----rv~-~meiyST~LWHLq--~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQ-----kdh~~Aik~f~RAiQldp~ 453 (638)
T KOG1126|consen 386 ----RVK-GMEIYSTTLWHLQ--DEVALSYLAQDLIDTDPNSPESWCALGNCFSLQ-----KDHDTAIKCFKRAIQLDPR 453 (638)
T ss_pred ----ccc-chhHHHHHHHHHH--hhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhh-----hHHHHHHHHHHHhhccCCc
Confidence 110 0000001111111 1112222222 23 446899999999999766 6999999999999874 6
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--CHH
Q 005877 278 EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAG 353 (672)
Q Consensus 278 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~~~ 353 (672)
.+.++..+|.=+.. ..++++|..+|++|+..+ +-.|++.||.+|.. ++.++.|.-+|++|++.+ +..
T Consensus 454 faYayTLlGhE~~~----~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K-----qek~e~Ae~~fqkA~~INP~nsv 524 (638)
T KOG1126|consen 454 FAYAYTLLGHESIA----TEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK-----QEKLEFAEFHFQKAVEINPSNSV 524 (638)
T ss_pred cchhhhhcCChhhh----hHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec-----cchhhHHHHHHHhhhcCCccchh
Confidence 79999999998887 899999999999999764 78899999999996 679999999999999986 777
Q ss_pred HHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChh--HHHH
Q 005877 354 GHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS--SLSR 429 (672)
Q Consensus 354 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~--a~~~ 429 (672)
....+|.++.. .|+.++|+.+|++|+.. .++...+.-+.++.. .+++++|+..+++..+.-|.+ .++.
T Consensus 525 i~~~~g~~~~~----~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~----~~~~~eal~~LEeLk~~vP~es~v~~l 596 (638)
T KOG1126|consen 525 ILCHIGRIQHQ----LKRKDKALQLYEKAIHLDPKNPLCKYHRASILFS----LGRYVEALQELEELKELVPQESSVFAL 596 (638)
T ss_pred HHhhhhHHHHH----hhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHh----hcchHHHHHHHHHHHHhCcchHHHHHH
Confidence 88899999999 99999999999999875 488899999999987 899999999999999888654 5888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCHHHH
Q 005877 430 WALESYLKGDVGKAFLLYSRMAELGYEVAQ 459 (672)
Q Consensus 430 lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~ 459 (672)
+|.+|-+.|+.+.|+..|--|.+.+..-++
T Consensus 597 lgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 597 LGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 999999999999999999999888755554
No 38
>PLN03077 Protein ECB2; Provisional
Probab=99.67 E-value=1e-12 Score=154.62 Aligned_cols=77 Identities=9% Similarity=0.055 Sum_probs=37.4
Q ss_pred hHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHcCCCCCCCHH
Q 005877 485 AERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQS---NAQAMFNLGYMHEHGQGLPLDLH 561 (672)
Q Consensus 485 ~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~ 561 (672)
.++.++|...|+.. ..+..+++.+...|. ..|+.++|++.|++-.+.+ +...+..|-..+.+ .|+.+
T Consensus 537 ~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~----~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~----~g~v~ 606 (857)
T PLN03077 537 CGRMNYAWNQFNSH--EKDVVSWNILLTGYV----AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR----SGMVT 606 (857)
T ss_pred cCCHHHHHHHHHhc--CCChhhHHHHHHHHH----HcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhh----cChHH
Confidence 34455555555544 344555555555555 5555566666555544421 22222222222332 45555
Q ss_pred HHHHHHHHHH
Q 005877 562 LAKRYYDQAL 571 (672)
Q Consensus 562 ~A~~~~~~A~ 571 (672)
+|.++|+...
T Consensus 607 ea~~~f~~M~ 616 (857)
T PLN03077 607 QGLEYFHSME 616 (857)
T ss_pred HHHHHHHHHH
Confidence 5555555555
No 39
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=2.1e-14 Score=137.56 Aligned_cols=231 Identities=15% Similarity=0.122 Sum_probs=199.9
Q ss_pred CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHH
Q 005877 314 LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKA 390 (672)
Q Consensus 314 ~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a 390 (672)
+..-...+|.+|+. .|-+.+|.+.++.++++ ..++.+..|..+|.. .++...|+..|...++. ++..-
T Consensus 222 dwwWk~Q~gkCylr-----Lgm~r~AekqlqssL~q~~~~dTfllLskvY~r----idQP~~AL~~~~~gld~fP~~VT~ 292 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLR-----LGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQR----IDQPERALLVIGEGLDSFPFDVTY 292 (478)
T ss_pred hHHHHHHHHHHHHH-----hcChhhhHHHHHHHhhcCCchhHHHHHHHHHHH----hccHHHHHHHHhhhhhcCCchhhh
Confidence 44556789999996 56889999999999887 589999999999999 89999999999999885 45566
Q ss_pred HHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHH
Q 005877 391 FYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG--YEVAQSNAAWIL 466 (672)
Q Consensus 391 ~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g--~~~a~~nla~~l 466 (672)
..-.+++++. .++.+.|+++|+.+++..+ .++..-+|..|+..++++.|+.+|++.+++| +++-..|+|.+.
T Consensus 293 l~g~ARi~ea----m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC 368 (478)
T KOG1129|consen 293 LLGQARIHEA----MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCC 368 (478)
T ss_pred hhhhHHHHHH----HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHH
Confidence 6677788987 8999999999999999884 5678888888999999999999999999998 788888999876
Q ss_pred HHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhC---C--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CC
Q 005877 467 DKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ---G--NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SN 539 (672)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~--~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~ 539 (672)
.. .++++-++..+++|... . -+|.|||||.+.. ..||+.-|.++|+.|+.. +|
T Consensus 369 ~y----------------aqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV----~iGD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 369 LY----------------AQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAV----TIGDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred Hh----------------hcchhhhHHHHHHHHhhccCcchhhhhhhccceeEE----eccchHHHHHHHHHHhccCcch
Confidence 55 66889999999987432 2 2889999999998 889999999999999874 78
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcchh
Q 005877 540 AQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPV 581 (672)
Q Consensus 540 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~ 581 (672)
.++++|||.+-.. .||.+.|+.++..|....|+...+.
T Consensus 429 ~ealnNLavL~~r----~G~i~~Arsll~~A~s~~P~m~E~~ 466 (478)
T KOG1129|consen 429 GEALNNLAVLAAR----SGDILGARSLLNAAKSVMPDMAEVT 466 (478)
T ss_pred HHHHHhHHHHHhh----cCchHHHHHHHHHhhhhCccccccc
Confidence 9999999998665 8999999999999999999876543
No 40
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.65 E-value=1.1e-11 Score=140.61 Aligned_cols=396 Identities=10% Similarity=-0.019 Sum_probs=277.7
Q ss_pred HHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhh
Q 005877 118 AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFL 195 (672)
Q Consensus 118 a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~ 195 (672)
.+.++.+...+.-+.+... .||++.|+..|+++.+ +.++.+...+..++...|+.++|+.++++++...+.
T Consensus 28 ~~~p~~~~~~y~~aii~~r----~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~--- 100 (822)
T PRK14574 28 VVNPAMADTQYDSLIIRAR----AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNI--- 100 (822)
T ss_pred ccCccchhHHHHHHHHHHh----CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCC---
Confidence 4456778889999999888 9999999999999987 566556668999999999999999999998731110
Q ss_pred ccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHH
Q 005877 196 ISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKA 273 (672)
Q Consensus 196 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a 273 (672)
.. .....++.++...|++++|++.|+++.+. +++.++..|+.+|... ++.++|++.++++
T Consensus 101 -------~~------~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~-----~q~~eAl~~l~~l 162 (822)
T PRK14574 101 -------SS------RGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADA-----GRGGVVLKQATEL 162 (822)
T ss_pred -------CH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhc-----CCHHHHHHHHHHh
Confidence 00 11112466888999999999999998666 6899999888888877 5999999999998
Q ss_pred HHcC-CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC
Q 005877 274 ADKG-EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE 350 (672)
Q Consensus 274 ~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~ 350 (672)
+... ....+..++.++.. .++..+|+..|+++++. ++......+-..... .+-...|.+..++--+.-
T Consensus 163 ~~~dp~~~~~l~layL~~~----~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~-----~~~~~~a~~l~~~~p~~f 233 (822)
T PRK14574 163 AERDPTVQNYMTLSYLNRA----TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQR-----NRIVEPALRLAKENPNLV 233 (822)
T ss_pred cccCcchHHHHHHHHHHHh----cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCcHHHHHHHHhCcccc
Confidence 7752 22222444555544 56776799999999976 467776666666553 234555665554322111
Q ss_pred CHH-----------HHHHHHHHHHcCCCchh---cHHHHHHHHHHHHHc--CCHH--HH------HHHHHHHHcCCCccC
Q 005877 351 EAG-----------GHYNLGVMYYKGIGVKR---DVKLACKYFLVAANA--GHQK--AF------YQLAKMFHTGVGLKK 406 (672)
Q Consensus 351 ~~~-----------a~~~Lg~~y~~g~g~~~---~~~~A~~~~~~A~~~--~~~~--a~------~~L~~~y~~g~g~~~ 406 (672)
.+. -..+.+.+... .... -.+.|+.-+++.... ..|+ .. -.++.+.. .+
T Consensus 234 ~~~~~~~l~~~~~a~~vr~a~~~~~--~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~-----r~ 306 (822)
T PRK14574 234 SAEHYRQLERDAAAEQVRMAVLPTR--SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLV-----RH 306 (822)
T ss_pred CHHHHHHHHHHHHHHHHhhcccccc--cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHH-----hh
Confidence 111 11111111111 0011 234455555555441 1121 11 23333333 68
Q ss_pred CHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCCCcc
Q 005877 407 NLHMATALYKLVAERG---PWSSLSRWALESYLKGDVGKAFLLYSRMAELG--------YEVAQSNAAWILDKYGEGSMC 475 (672)
Q Consensus 407 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g--------~~~a~~nla~~l~~~~~~~~~ 475 (672)
++.+++..|+..-..+ |+-+....|..|...+.+++|+..|+.++... ....+.-|-+.|..
T Consensus 307 r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld------- 379 (822)
T PRK14574 307 QTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE------- 379 (822)
T ss_pred hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh-------
Confidence 9999999999987666 45577788999999999999999999997643 11222334444443
Q ss_pred cCCCCCCCchHhHHHHHHHHHHHHhCC-----------------CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--
Q 005877 476 MGESGFCTDAERHQCAHSLWWQASEQG-----------------NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS-- 536 (672)
Q Consensus 476 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-----------------~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~-- 536 (672)
.+++++|..+..+..+.. ..++...++.++. -.+|+.+|.+.+++.+.
T Consensus 380 ---------~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~----~~gdl~~Ae~~le~l~~~a 446 (822)
T PRK14574 380 ---------SEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV----ALNDLPTAQKKLEDLSSTA 446 (822)
T ss_pred ---------cccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC
Confidence 789999999998754411 1456667888887 67999999999999866
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877 537 QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK 578 (672)
Q Consensus 537 ~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 578 (672)
++|+..+..+|.++.. .+....|.++++.+..++|+..
T Consensus 447 P~n~~l~~~~A~v~~~----Rg~p~~A~~~~k~a~~l~P~~~ 484 (822)
T PRK14574 447 PANQNLRIALASIYLA----RDLPRKAEQELKAVESLAPRSL 484 (822)
T ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhCCccH
Confidence 5899999999999987 8999999999999999988864
No 41
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.7e-12 Score=133.57 Aligned_cols=408 Identities=16% Similarity=0.151 Sum_probs=290.4
Q ss_pred CCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHH-HHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHH-------
Q 005877 83 GAINGSYYITISKMMSAVTNGDVRVMEEATSEVES-AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFA------- 154 (672)
Q Consensus 83 ~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~-a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A------- 154 (672)
.+|...|-++.++.. .+++..|...... ..+..+..+.+..+.++.. .++.+.|.......
T Consensus 47 ~dp~d~~~~aq~l~~-------~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~----lk~~~~al~vl~~~~~~~~~f 115 (611)
T KOG1173|consen 47 NDPADIYWLAQVLYL-------GRQYERAAHLITTYKLEKRDIACRYLAAKCLVK----LKEWDQALLVLGRGHVETNPF 115 (611)
T ss_pred CChHHHHHHHHHHHh-------hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH----HHHHHHHHHHhcccchhhcch
Confidence 567778888888775 4788899888888 6666788888999998887 77777777666621
Q ss_pred -------Hh---C---C-------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhcc---CCCCcc---cchhc
Q 005877 155 -------AE---G---G-------NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLIS---KDSPVI---EPIRI 208 (672)
Q Consensus 155 -------~~---~---~-------~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~---~~~~~~---~~~~l 208 (672)
.. . + ....++.-|.+|..+++.++|...|.+++..+...+..- ..+..+ +...+
T Consensus 116 ~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~l 195 (611)
T KOG1173|consen 116 SYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFEL 195 (611)
T ss_pred hhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHH
Confidence 11 0 0 112334456677778999999999999987765433210 000000 00111
Q ss_pred ccCchhhhhHhhhccCChHHHHHHHHH-------------------HHH-cCCHHHHHHHHHHHHhcCCCcccCHHHHHH
Q 005877 209 HNGAEENKGALRKSRGEDDEAFQILEY-------------------QAQ-KGNAGAMYKIGLFYYFGLRGLRRDRTKALM 268 (672)
Q Consensus 209 ~~~~~~~~~~~~~~~g~~~~Ai~~~~~-------------------aa~-~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~ 268 (672)
... +... ...+...+-++.+=+ ... ..+++.....+..++.+. ++.+-.+
T Consensus 196 l~~----l~~a-~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c-----~f~~c~k 265 (611)
T KOG1173|consen 196 LES----LDLA-MLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGC-----RFKECLK 265 (611)
T ss_pred Hhc----ccHH-hhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcC-----hHHHHHH
Confidence 000 0000 011111111111111 111 137788888888888884 8999888
Q ss_pred HHHHHHHcC---CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHcCCCCCcCCHHHHH
Q 005877 269 WFSKAADKG---EPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR-----QQLYSAYNGIGYLYVKGYGVEKKNYTKAK 340 (672)
Q Consensus 269 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-----~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~ 340 (672)
......+.+ .+-.-..+|.++.. ++. .++|.-+.+ +..+.+++.+|..|.. .+++.+|.
T Consensus 266 it~~lle~dpfh~~~~~~~ia~l~el-----~~~---n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~-----i~k~seAR 332 (611)
T KOG1173|consen 266 ITEELLEKDPFHLPCLPLHIACLYEL-----GKS---NKLFLLSHKLVDLYPSKALSWFAVGCYYLM-----IGKYSEAR 332 (611)
T ss_pred HhHHHHhhCCCCcchHHHHHHHHHHh-----ccc---chHHHHHHHHHHhCCCCCcchhhHHHHHHH-----hcCcHHHH
Confidence 888888753 34455778877765 322 334444432 2467788999998885 46899999
Q ss_pred HHHHHHHhCC--CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHH
Q 005877 341 EYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYK 416 (672)
Q Consensus 341 ~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~ 416 (672)
.||.++...+ ..+++...|..|.. ++..++|+..|..|.+ .|.-.-...+|.=|.. .++.+.|..+|.
T Consensus 333 ry~SKat~lD~~fgpaWl~fghsfa~----e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~----t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 333 RYFSKATTLDPTFGPAWLAFGHSFAG----EGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR----TNNLKLAEKFFK 404 (611)
T ss_pred HHHHHHhhcCccccHHHHHHhHHhhh----cchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH----hccHHHHHHHHH
Confidence 9999998876 67888999999987 8999999999999988 4555556788887776 899999999999
Q ss_pred HHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-----CHHHHHHHHHHHHHhCCCCcccCCCCCCCch
Q 005877 417 LVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL----G-----YEVAQSNAAWILDKYGEGSMCMGESGFCTDA 485 (672)
Q Consensus 417 ~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~----g-----~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~ 485 (672)
+|....| |-.+..+|.+.|..+.+.+|..+|+.+++. + ..+-++|||.++.+ .
T Consensus 405 ~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk----------------l 468 (611)
T KOG1173|consen 405 QALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK----------------L 468 (611)
T ss_pred HHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH----------------H
Confidence 9999885 556788999999999999999999999732 2 33458999999998 8
Q ss_pred HhHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHc
Q 005877 486 ERHQCAHSLWWQASE--QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEH 552 (672)
Q Consensus 486 ~~~~~A~~~~~~a~~--~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~ 552 (672)
+.+++|+.++++++. +.+++++-.+|.+|. ..|++++|+.+|.+|+- +++..+---|+.+.+.
T Consensus 469 ~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~----llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLSPKDASTHASIGYIYH----LLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred hhHHHHHHHHHHHHHcCCCchhHHHHHHHHHH----HhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 899999999998765 467888899999999 99999999999999965 4565555555655443
No 42
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.57 E-value=9.7e-13 Score=134.19 Aligned_cols=225 Identities=16% Similarity=0.047 Sum_probs=147.9
Q ss_pred CHHHHHHHHHHHHhC------CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccC
Q 005877 335 NYTKAKEYFEKAADN------EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKK 406 (672)
Q Consensus 335 ~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~ 406 (672)
..+.++..+.++++. +.+..++.+|.+|.. .|++++|+..|+++++. +++.+++++|.++.. .+
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~----~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~----~g 112 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDS----LGLRALARNDFSQALALRPDMADAYNYLGIYLTQ----AG 112 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----CC
Confidence 445666666666642 235667777887777 77788888888877764 467777888877776 77
Q ss_pred CHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHhCCCCcccCCCCCCC
Q 005877 407 NLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAW-ILDKYGEGSMCMGESGFCT 483 (672)
Q Consensus 407 ~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~-~l~~~~~~~~~~~~~~~~~ 483 (672)
++++|+..|+++++..| ..++.++|.+++..|++++|+..++++++.........+.. +...
T Consensus 113 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~--------------- 177 (296)
T PRK11189 113 NFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAES--------------- 177 (296)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHc---------------
Confidence 88888888888877764 45677778877778888888888888876653322211111 1111
Q ss_pred chHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH----h--cCCHHHHHHHHHHHHcCCCCC
Q 005877 484 DAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHAR----S--QSNAQAMFNLGYMHEHGQGLP 557 (672)
Q Consensus 484 ~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~----~--~~~~~a~~~Lg~~y~~g~g~~ 557 (672)
.+++++|+..+++++...+++.+. .+.++..- ...+..++.+.+.++. + ...++++++||.+|.. .
T Consensus 178 -~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~l--g~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~----~ 249 (296)
T PRK11189 178 -KLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYL--GKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLS----L 249 (296)
T ss_pred -cCCHHHHHHHHHHHHhhCCccccH-HHHHHHHc--cCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH----C
Confidence 346788888887766554444433 24433310 1122233444444332 2 2456899999999998 8
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchhHHHHHHHHH
Q 005877 558 LDLHLAKRYYDQALEVDPAAKLPVTLALTSLWI 590 (672)
Q Consensus 558 ~d~~~A~~~~~~A~~~~~~~~~~~~~~~~~~~~ 590 (672)
|++++|+.+|++|++.+|...+....+++.+..
T Consensus 250 g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~ 282 (296)
T PRK11189 250 GDLDEAAALFKLALANNVYNFVEHRYALLELAL 282 (296)
T ss_pred CCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 999999999999999998777666566555543
No 43
>PRK12370 invasion protein regulator; Provisional
Probab=99.57 E-value=1.9e-12 Score=143.97 Aligned_cols=243 Identities=13% Similarity=-0.003 Sum_probs=137.0
Q ss_pred cCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhc---------cCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcc
Q 005877 141 ERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLR---------QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIH 209 (672)
Q Consensus 141 ~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~---------~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~ 209 (672)
..+.++|+.+|++|++ ++++.++..||.+|.. .+++++|+..++++++
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~--------------------- 332 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE--------------------- 332 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh---------------------
Confidence 4455666666666654 4566666666665542 2346666666666654
Q ss_pred cCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHH
Q 005877 210 NGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGE 287 (672)
Q Consensus 210 ~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~ 287 (672)
.+++++.++..+|.++... +++++|+..|+++++ ++++.+++.+|.
T Consensus 333 ---------------------------ldP~~~~a~~~lg~~~~~~-----g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 380 (553)
T PRK12370 333 ---------------------------LDHNNPQALGLLGLINTIH-----SEYIVGSLLFKQANLLSPISADIKYYYGW 380 (553)
T ss_pred ---------------------------cCCCCHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 2344566666666666555 366666666666655 345666666666
Q ss_pred HHHcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC---CCHHHHHHHHHHH
Q 005877 288 IYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN---EEAGGHYNLGVMY 362 (672)
Q Consensus 288 ~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y 362 (672)
++.. .|++++|+.+++++++.+ ++.+...++.++.. .+++++|+.+++++++. +++.++.++|.+|
T Consensus 381 ~l~~----~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~-----~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l 451 (553)
T PRK12370 381 NLFM----AGQLEEALQTINECLKLDPTRAAAGITKLWITYY-----HTGIDDAIRLGDELRSQHLQDNPILLSMQVMFL 451 (553)
T ss_pred HHHH----CCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-----ccCHHHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence 6666 666666666666666543 33333333333332 24666676666666543 3555666666666
Q ss_pred HcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcC
Q 005877 363 YKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKG 438 (672)
Q Consensus 363 ~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~g 438 (672)
.. .|++++|...+++.... .+..+...++..|.. .+ ++|...+++..+.. .+........++--.|
T Consensus 452 ~~----~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g 521 (553)
T PRK12370 452 SL----KGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ----NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHG 521 (553)
T ss_pred Hh----CCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc----cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHh
Confidence 66 66677777766665432 234455555555543 23 35555555544332 1112223555566667
Q ss_pred CHHHHHHHHHHHHHcCCH
Q 005877 439 DVGKAFLLYSRMAELGYE 456 (672)
Q Consensus 439 ~~~~A~~~~~~a~~~g~~ 456 (672)
+.+.+..| +++.+.++.
T Consensus 522 ~~~~~~~~-~~~~~~~~~ 538 (553)
T PRK12370 522 EAIAEKMW-NKFKNEDNI 538 (553)
T ss_pred hhHHHHHH-HHhhccchH
Confidence 77777777 666655543
No 44
>PRK12370 invasion protein regulator; Provisional
Probab=99.57 E-value=1.2e-12 Score=145.47 Aligned_cols=173 Identities=13% Similarity=0.061 Sum_probs=142.9
Q ss_pred cCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCH
Q 005877 261 RDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNY 336 (672)
Q Consensus 261 ~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~ 336 (672)
+++++|+..++++++ ++++.++..+|.++.. .+++++|+..|+++++. +++.+++.+|.++.. .|++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~----~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-----~G~~ 388 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTI----HSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM-----AGQL 388 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----CCCH
Confidence 579999999999987 4789999999999998 89999999999999876 478899999999986 6799
Q ss_pred HHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHcCCCccCCHHHH
Q 005877 337 TKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA---GHQKAFYQLAKMFHTGVGLKKNLHMA 411 (672)
Q Consensus 337 ~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~---~~~~a~~~L~~~y~~g~g~~~~~~~A 411 (672)
++|+.+++++++.+ ++.+.+.++.++.. .+++++|+.+++++++. +++.++.++|.++.. .|++++|
T Consensus 389 ~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~----~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~----~G~~~eA 460 (553)
T PRK12370 389 EEALQTINECLKLDPTRAAAGITKLWITYY----HTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSL----KGKHELA 460 (553)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHh----ccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHh----CCCHHHH
Confidence 99999999999874 55566666666666 67899999999998763 467888999999987 8999999
Q ss_pred HHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005877 412 TALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (672)
Q Consensus 412 ~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 452 (672)
...+++.....+ ..+...++..+...|+ +|...+++..+
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~ 501 (553)
T PRK12370 461 RKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLE 501 (553)
T ss_pred HHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence 999999776654 3456667777777774 66666666543
No 45
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.57 E-value=6.2e-12 Score=135.97 Aligned_cols=305 Identities=15% Similarity=0.134 Sum_probs=237.5
Q ss_pred hhhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHH
Q 005877 105 VRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAV 180 (672)
Q Consensus 105 ~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~ 180 (672)
.|++++|..++.+.+ ++.++.+++.||.+|.. .||..++...+..|+. +++.+-+..++..-.++|+++.|+
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEq----rGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQ----RGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH----cccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 699999999999955 55789999999999999 9999999999999987 688899999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCC-------HHHHHHHHHHHH
Q 005877 181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGN-------AGAMYKIGLFYY 253 (672)
Q Consensus 181 ~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~-------~~a~~~Lg~~y~ 253 (672)
-+|.+|++..|..+. .......++.+.|+...|...|.++..... .+.-...+..+.
T Consensus 228 ~cy~rAI~~~p~n~~----------------~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 228 YCYSRAIQANPSNWE----------------LIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHHHHhcCCcchH----------------HHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 999999998765431 223477888999999999999999877643 222333355555
Q ss_pred hcCCCcccCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH------------------
Q 005877 254 FGLRGLRRDRTKALMWFSKAADKGE----PQSMEFLGEIYARGAGVERNYTKALEWLTHAAR------------------ 311 (672)
Q Consensus 254 ~~~~~~~~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------------------ 311 (672)
.. .+.+.|++.++.++..+. -.-+..++.+|.. ...+++|......-..
T Consensus 292 ~~-----~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~----~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~ 362 (895)
T KOG2076|consen 292 TH-----NERERAAKALEGALSKEKDEASLEDLNILAELFLK----NKQSDKALMKIVDDRNRESEKDDSEWDTDERRRE 362 (895)
T ss_pred Hh-----hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH----hHHHHHhhHHHHHHhccccCCChhhhhhhhhccc
Confidence 54 366999999999988422 2345566777766 6677777766655443
Q ss_pred -------cC-----CHHH-HHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHcCCCchhcHHHH
Q 005877 312 -------QQ-----LYSA-YNGIGYLYVKGYGVEKKNYTKAKEYFEKAAD---NEEAGGHYNLGVMYYKGIGVKRDVKLA 375 (672)
Q Consensus 312 -------~~-----~~~a-~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~---~~~~~a~~~Lg~~y~~g~g~~~~~~~A 375 (672)
.+ +... ...++.+.+. ..+..+++..|..--. .++++-++.++..|.+ .+.+.+|
T Consensus 363 ~~~~~~~~~~~~s~~l~v~rl~icL~~L~-----~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~----~~~~~~A 433 (895)
T KOG2076|consen 363 EPNALCEVGKELSYDLRVIRLMICLVHLK-----ERELLEALLHFLVEDNVWVSDDVDLYLDLADALTN----IGKYKEA 433 (895)
T ss_pred cccccccCCCCCCccchhHhHhhhhhccc-----ccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHh----cccHHHH
Confidence 01 1122 4445555543 2355555555433221 2467889999999999 9999999
Q ss_pred HHHHHHHHHc---CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005877 376 CKYFLVAANA---GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRM 450 (672)
Q Consensus 376 ~~~~~~A~~~---~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a 450 (672)
+.+|...... +....|+.+|.||.. .+.+++|+.+|++++...| .++...|+.++...|++++|.+.++..
T Consensus 434 l~~l~~i~~~~~~~~~~vw~~~a~c~~~----l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 434 LRLLSPITNREGYQNAFVWYKLARCYME----LGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHHHHHHhcCccccchhhhHHHHHHHHH----HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 9999998874 356789999999998 9999999999999998875 578999999999999999999999885
Q ss_pred H
Q 005877 451 A 451 (672)
Q Consensus 451 ~ 451 (672)
.
T Consensus 510 ~ 510 (895)
T KOG2076|consen 510 I 510 (895)
T ss_pred c
Confidence 4
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.54 E-value=5.2e-14 Score=143.10 Aligned_cols=250 Identities=18% Similarity=0.131 Sum_probs=64.7
Q ss_pred HHHHHHHhhcCCcccCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCc
Q 005877 127 RSVLGFLYGMGMMRERNKGKAFLYHHFAAE----GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPV 202 (672)
Q Consensus 127 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~----~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~ 202 (672)
.+.++.++.. .+++++|+..+++.+. ++++..+..+|.+....+++++|+..|++++..++...
T Consensus 11 ~l~~A~~~~~----~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~-------- 78 (280)
T PF13429_consen 11 ALRLARLLYQ----RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANP-------- 78 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccc----cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--------
Confidence 3455666666 7777777777755432 35666777777777777777777777777765432210
Q ss_pred ccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc----C
Q 005877 203 IEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK-GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----G 277 (672)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~-~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----~ 277 (672)
.....+..+ ...+++++|+.++++.-+. +++.....+..++... ++++++...++++... .
T Consensus 79 --------~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~~~~~~l~~~~~~~~~~~ 144 (280)
T PF13429_consen 79 --------QDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRL-----GDYDEAEELLEKLEELPAAPD 144 (280)
T ss_dssp ------------------------------------------------H-HHHT-----T-HHHHHHHHHHHHH-T---T
T ss_pred --------ccccccccc-cccccccccccccccccccccccchhhHHHHHHHHH-----hHHHHHHHHHHHHHhccCCCC
Confidence 011112222 3445555555555544332 3444444444555444 3555555555554331 3
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHH
Q 005877 278 EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAG 353 (672)
Q Consensus 278 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~ 353 (672)
++..+..+|.++.. .|+.++|+..|+++++. +++.+...++.++.. .|+++++...++...+. .++.
T Consensus 145 ~~~~~~~~a~~~~~----~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~-----~~~~~~~~~~l~~~~~~~~~~~~ 215 (280)
T PF13429_consen 145 SARFWLALAEIYEQ----LGDPDKALRDYRKALELDPDDPDARNALAWLLID-----MGDYDEAREALKRLLKAAPDDPD 215 (280)
T ss_dssp -HHHHHHHHHHHHH----CCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHH-HTSCC
T ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----CCChHHHHHHHHHHHHHCcCHHH
Confidence 44555555555555 55556666666665543 345555555555542 34555544444443332 3444
Q ss_pred HHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHH
Q 005877 354 GHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVA 419 (672)
Q Consensus 354 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~ 419 (672)
.+..+|.+|.. .+++++|+.+|+++.+ ++++..+..+|.++.. .|+.++|..+++++.
T Consensus 216 ~~~~la~~~~~----lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~----~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 216 LWDALAAAYLQ----LGRYEEALEYLEKALKLNPDDPLWLLAYADALEQ----AGRKDEALRLRRQAL 275 (280)
T ss_dssp HCHHHHHHHHH----HT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------------------
T ss_pred HHHHHHHHhcc----cccccccccccccccccccccccccccccccccc----ccccccccccccccc
Confidence 45555555555 5555555555555544 3345555555555554 555555555555443
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.54 E-value=2.7e-11 Score=129.76 Aligned_cols=283 Identities=11% Similarity=0.024 Sum_probs=162.5
Q ss_pred hhHhhhccCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-CCH--HHHHHHHHHHH
Q 005877 216 KGALRKSRGEDDEAFQILEYQAQKG--NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-GEP--QSMEFLGEIYA 290 (672)
Q Consensus 216 ~~~~~~~~g~~~~Ai~~~~~aa~~~--~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-~~~--~a~~~Lg~~y~ 290 (672)
.|.+....|+++.|.+.+.++.+.. ....+...|.+.... +++++|.++|+++.+. +++ .+....+.++.
T Consensus 90 ~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~-----g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l 164 (409)
T TIGR00540 90 EALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQR-----GDEARANQHLEEAAELAGNDNILVEIARTRILL 164 (409)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH
Confidence 3455556777777777777766552 344455556666655 3777777777776653 222 23334466666
Q ss_pred cCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--CHHHHH----HHHHHH
Q 005877 291 RGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHY----NLGVMY 362 (672)
Q Consensus 291 ~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~~~a~~----~Lg~~y 362 (672)
. .+++++|...+++..+. +++.++..++.+|.. .+|+++|++.+.+..+.+ ++.... ....-.
T Consensus 165 ~----~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~-----~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 165 A----QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIR-----SGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGL 235 (409)
T ss_pred H----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 6 67777777777776654 366667777777764 457777777777666552 111111 111111
Q ss_pred HcCCCchhcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 005877 363 YKGIGVKRDVKLACKYFLVAANA------GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYL 436 (672)
Q Consensus 363 ~~g~g~~~~~~~A~~~~~~A~~~------~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 436 (672)
.. .+..+++.+.+.++.+. .++.....++..+.. .+++++|...++++++..|.+.
T Consensus 236 l~----~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~----~g~~~~A~~~l~~~l~~~pd~~---------- 297 (409)
T TIGR00540 236 LD----EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLID----CDDHDSAQEIIFDGLKKLGDDR---------- 297 (409)
T ss_pred HH----HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCCcc----------
Confidence 11 11222222233332221 234444444444444 4445555555555444433221
Q ss_pred cCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHH--hCCCH--HHHHHHH
Q 005877 437 KGDVGKAFLLYSRMAELGYEVAQ-SNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS--EQGNE--HAALLIG 511 (672)
Q Consensus 437 ~g~~~~A~~~~~~a~~~g~~~a~-~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~--~a~~~lG 511 (672)
... ..+-.+. ..+.++..++++.++++. .++++ .....+|
T Consensus 298 --------------------~~~~~~l~~~~---------------~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg 342 (409)
T TIGR00540 298 --------------------AISLPLCLPIP---------------RLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALG 342 (409)
T ss_pred --------------------cchhHHHHHhh---------------hcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 000 0000000 001234455666666543 45677 6677999
Q ss_pred HHHHhCCCCCCCHHHHHHHHHH--HHh-cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhc
Q 005877 512 DAYYYGRGTQRDYERAAEAYMH--ARS-QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEV 573 (672)
Q Consensus 512 ~~y~~g~g~~~d~~~A~~~~~~--A~~-~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 573 (672)
++++ ..+++++|.++|++ +.+ ..++....+||.++.. .|+.++|.++|++++..
T Consensus 343 ~l~~----~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~----~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 343 QLLM----KHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ----AGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHH----HcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 9999 89999999999995 555 3566667799999988 89999999999998664
No 48
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=1.6e-13 Score=131.65 Aligned_cols=222 Identities=16% Similarity=0.117 Sum_probs=166.7
Q ss_pred HHHHHHhhcCCcccCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccch
Q 005877 128 SVLGFLYGMGMMRERNKGKAFLYHHFAAE-GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPI 206 (672)
Q Consensus 128 ~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~-~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~ 206 (672)
..+|.+|.. .+-+.+|.+.++.+.. ..+++....|..+|.+.+.++.|+..|.+.++..
T Consensus 227 ~Q~gkCylr----Lgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f---------------- 286 (478)
T KOG1129|consen 227 QQMGKCYLR----LGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF---------------- 286 (478)
T ss_pred HHHHHHHHH----hcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC----------------
Confidence 467777777 6777777777777776 3677777777777777777777777777765522
Q ss_pred hcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHH
Q 005877 207 RIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEF 284 (672)
Q Consensus 207 ~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~ 284 (672)
+++.......++++... ++++.|.++|+.+++. .+.++.-.
T Consensus 287 --------------------------------P~~VT~l~g~ARi~eam-----~~~~~a~~lYk~vlk~~~~nvEaiAc 329 (478)
T KOG1129|consen 287 --------------------------------PFDVTYLLGQARIHEAM-----EQQEDALQLYKLVLKLHPINVEAIAC 329 (478)
T ss_pred --------------------------------CchhhhhhhhHHHHHHH-----HhHHHHHHHHHHHHhcCCccceeeee
Confidence 34566666677777666 4888888888888775 45666666
Q ss_pred HHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC-----CCHHHHHH
Q 005877 285 LGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-----EEAGGHYN 357 (672)
Q Consensus 285 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~-----~~~~a~~~ 357 (672)
+|.-|.. .++++-|+.||++.++.| +++...++|.+++.+ +.++-++..|++|... .-++.+||
T Consensus 330 ia~~yfY----~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ya-----qQ~D~~L~sf~RAlstat~~~~aaDvWYN 400 (478)
T KOG1129|consen 330 IAVGYFY----DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYA-----QQIDLVLPSFQRALSTATQPGQAADVWYN 400 (478)
T ss_pred eeecccc----CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhh-----cchhhhHHHHHHHHhhccCcchhhhhhhc
Confidence 7777776 778888888888888876 778888888888862 3788888888888654 24678888
Q ss_pred HHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC
Q 005877 358 LGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP 423 (672)
Q Consensus 358 Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 423 (672)
||.+... .||+..|..+|+.++.. .|.++++|||.+-.. .|+.+.|..++..+....|
T Consensus 401 lg~vaV~----iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r----~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 401 LGFVAVT----IGDFNLAKRCFRLALTSDAQHGEALNNLAVLAAR----SGDILGARSLLNAAKSVMP 460 (478)
T ss_pred cceeEEe----ccchHHHHHHHHHHhccCcchHHHHHhHHHHHhh----cCchHHHHHHHHHhhhhCc
Confidence 8888777 78888888888888764 477888888887776 7888888888887766554
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.53 E-value=5e-14 Score=143.20 Aligned_cols=247 Identities=20% Similarity=0.132 Sum_probs=92.6
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--CHHHHH
Q 005877 283 EFLGEIYARGAGVERNYTKALEWLTHAARQ----QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHY 356 (672)
Q Consensus 283 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~~~a~~ 356 (672)
+.++.++.. .+++++|++.+++.+.. +++..+..+|.+... .+++++|+..|++.+..+ ++..+.
T Consensus 12 l~~A~~~~~----~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~-----~~~~~~A~~ay~~l~~~~~~~~~~~~ 82 (280)
T PF13429_consen 12 LRLARLLYQ----RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWS-----LGDYDEAIEAYEKLLASDKANPQDYE 82 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccc----cccccccccccccccccccccccccccccccccccc-----cccccccccccccccccccccccccc
Confidence 355666666 77778888877654432 345555556666553 457778888888777654 455555
Q ss_pred HHHHHHHcCCCchhcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC----ChhHHHHHH
Q 005877 357 NLGVMYYKGIGVKRDVKLACKYFLVAANAG-HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----PWSSLSRWA 431 (672)
Q Consensus 357 ~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg 431 (672)
.++.+ .. .+++++|+..++++.+.. ++..+.....++.. .++++++...++++.+.. ++..+..+|
T Consensus 83 ~l~~l-~~----~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a 153 (280)
T PF13429_consen 83 RLIQL-LQ----DGDPEEALKLAEKAYERDGDPRYLLSALQLYYR----LGDYDEAEELLEKLEELPAAPDSARFWLALA 153 (280)
T ss_dssp ----------------------------------------H-HHH----TT-HHHHHHHHHHHHH-T---T-HHHHHHHH
T ss_pred ccccc-cc----cccccccccccccccccccccchhhHHHHHHHH----HhHHHHHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 66666 34 577888888777775533 44444444555555 678888888888866543 334566778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHH---HHHhCCCHHH
Q 005877 432 LESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWW---QASEQGNEHA 506 (672)
Q Consensus 432 ~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~---~a~~~~~~~a 506 (672)
.++...|+.++|+..|+++++. +++.+...+++++.. .++.+++...++ +.. +.++..
T Consensus 154 ~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~----------------~~~~~~~~~~l~~~~~~~-~~~~~~ 216 (280)
T PF13429_consen 154 EIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLID----------------MGDYDEAREALKRLLKAA-PDDPDL 216 (280)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT----------------TCHHHHHHHHHHHHHHH--HTSCCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----------------CCChHHHHHHHHHHHHHC-cCHHHH
Confidence 8888888888888888888554 567778888888765 455665544444 333 456667
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Q 005877 507 ALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALE 572 (672)
Q Consensus 507 ~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 572 (672)
+..+|.+|. ..+++++|+.+|+++.+ ++|+..+.++|.++.. .|+.++|.++++++.+
T Consensus 217 ~~~la~~~~----~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~----~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 217 WDALAAAYL----QLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQ----AGRKDEALRLRRQALR 276 (280)
T ss_dssp CHHHHHHHH----HHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------------
T ss_pred HHHHHHHhc----ccccccccccccccccccccccccccccccccccc----cccccccccccccccc
Confidence 778899998 78899999999999877 4789999999999887 8899999999888865
No 50
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.49 E-value=1.8e-10 Score=122.72 Aligned_cols=286 Identities=10% Similarity=0.029 Sum_probs=165.4
Q ss_pred hHhhhccCChHHHHHHHHHHHHcC-CHHHHHHHHHHH-HhcCCCcccCHHHHHHHHHHHHHcC--CHHHH-HHHHHHHHc
Q 005877 217 GALRKSRGEDDEAFQILEYQAQKG-NAGAMYKIGLFY-YFGLRGLRRDRTKALMWFSKAADKG--EPQSM-EFLGEIYAR 291 (672)
Q Consensus 217 ~~~~~~~g~~~~Ai~~~~~aa~~~-~~~a~~~Lg~~y-~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~-~~Lg~~y~~ 291 (672)
|.+....|++++|.+.+.+..+.. +|..++.++-.. ... +++++|.++|+++.+.. +..+. ...+.++..
T Consensus 91 gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~-----g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 91 ALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQR-----GDEARANQHLERAAELADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 344445677777777777665542 444444443333 333 37777777777776632 22222 233667766
Q ss_pred CCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCC--HHHHHH-HHHHHHcCC
Q 005877 292 GAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE--AGGHYN-LGVMYYKGI 366 (672)
Q Consensus 292 g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~--~~a~~~-Lg~~y~~g~ 366 (672)
.+++++|+..+++..+. +++.++..++.+|.. .|++++|+..+.+..+... +..... .+..|
T Consensus 166 ----~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~-----~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~---- 232 (398)
T PRK10747 166 ----RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR-----TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAW---- 232 (398)
T ss_pred ----CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH----
Confidence 77777777777776654 366777777777764 4577777777766655431 111110 00111
Q ss_pred CchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHH--cCChhHHHHHHHHHHhcCCHHHHH
Q 005877 367 GVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAE--RGPWSSLSRWALESYLKGDVGKAF 444 (672)
Q Consensus 367 g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~g~~~~A~ 444 (672)
..+...... ..+-+....+++...+ ..++.....++..+...|+.++|.
T Consensus 233 -------------------------~~l~~~~~~----~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 233 -------------------------IGLMDQAMA----DQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred -------------------------HHHHHHHHH----hcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 000000000 1122222222222211 123444555555555566666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHH--HhCCCHHHHHHHHHHHHhCCCCCC
Q 005877 445 LLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQA--SEQGNEHAALLIGDAYYYGRGTQR 522 (672)
Q Consensus 445 ~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a--~~~~~~~a~~~lG~~y~~g~g~~~ 522 (672)
..++++++..... .+..++... ..++.+++++..++. ..++++..++.+|.++. ..+
T Consensus 284 ~~L~~~l~~~~~~---~l~~l~~~l--------------~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~----~~~ 342 (398)
T PRK10747 284 QIILDGLKRQYDE---RLVLLIPRL--------------KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLM----KHG 342 (398)
T ss_pred HHHHHHHhcCCCH---HHHHHHhhc--------------cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH----HCC
Confidence 6666665532111 112222110 023556666666643 45677888999999999 899
Q ss_pred CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcC
Q 005877 523 DYERAAEAYMHARSQ-SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVD 574 (672)
Q Consensus 523 d~~~A~~~~~~A~~~-~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 574 (672)
++++|.++|+++++. .+...+..|+.+++. .|+.++|.++|++++.+-
T Consensus 343 ~~~~A~~~le~al~~~P~~~~~~~La~~~~~----~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 343 EWQEASLAFRAALKQRPDAYDYAWLADALDR----LHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhh
Confidence 999999999999886 556666789999998 899999999999998763
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.49 E-value=1.1e-11 Score=121.54 Aligned_cols=191 Identities=17% Similarity=0.149 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHH
Q 005877 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL 427 (672)
Q Consensus 352 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~ 427 (672)
+.+++++|.++.. .+++++|+.+++++++. .+..++..+|.++.. .+++++|+.+|+++++..+ ...+
T Consensus 31 ~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~ 102 (234)
T TIGR02521 31 AKIRVQLALGYLE----QGDLEVAKENLDKALEHDPDDYLAYLALALYYQQ----LGELEKAEDSFRRALTLNPNNGDVL 102 (234)
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHH
Confidence 3445555555555 55555555555555442 234455555555554 5555555555555555442 2344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh--C
Q 005877 428 SRWALESYLKGDVGKAFLLYSRMAEL----GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE--Q 501 (672)
Q Consensus 428 ~~lg~~~~~~g~~~~A~~~~~~a~~~----g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~ 501 (672)
..+|..+...|++++|+.+++++++. .......++|.++.. .+++++|..+++++.. +
T Consensus 103 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------~g~~~~A~~~~~~~~~~~~ 166 (234)
T TIGR02521 103 NNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK----------------AGDFDKAEKYLTRALQIDP 166 (234)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHhCc
Confidence 55555555555555555555555442 123344455555544 4455566666665443 3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcC
Q 005877 502 GNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVD 574 (672)
Q Consensus 502 ~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 574 (672)
+++.+++.+|.+++ ..+++++|..+++++++. .++..+..++.++.. .++.++|..+.+.+....
T Consensus 167 ~~~~~~~~la~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 167 QRPESLLELAELYY----LRGQYKDARAYLERYQQTYNQTAESLWLGIRIARA----LGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred CChHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhhC
Confidence 44667788888888 788899999988888763 567777777777765 788888888887766543
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.48 E-value=6.5e-11 Score=126.79 Aligned_cols=285 Identities=13% Similarity=-0.008 Sum_probs=201.0
Q ss_pred HHHHHHhhcCCcccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccc
Q 005877 128 SVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEP 205 (672)
Q Consensus 128 ~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~ 205 (672)
..-|.+-.. .+|++.|.+...++.+. +...++...|.+....|++++|..+++++.+..+... .
T Consensus 88 ~~~glla~~----~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~-------l--- 153 (409)
T TIGR00540 88 TEEALLKLA----EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN-------I--- 153 (409)
T ss_pred HHHHHHHHh----CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc-------h---
Confidence 445555555 88999999998888773 4456677778888888999999999988876432210 0
Q ss_pred hhcccCchhhhhHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcC--CHHH
Q 005877 206 IRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG--EPQS 281 (672)
Q Consensus 206 ~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a 281 (672)
......+.++...|++++|...++...+. .++.+...++.++... +|+++|.+.+++..+.+ ++..
T Consensus 154 -----~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~-----~d~~~a~~~l~~l~k~~~~~~~~ 223 (409)
T TIGR00540 154 -----LVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRS-----GAWQALDDIIDNMAKAGLFDDEE 223 (409)
T ss_pred -----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHcCCCCHHH
Confidence 01112466777888999999998887554 6899999999999988 49999999999988753 2222
Q ss_pred HH----HHHHHHHcCCCCcCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC-
Q 005877 282 ME----FLGEIYARGAGVERNYTKALEWLTHAARQ------QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE- 350 (672)
Q Consensus 282 ~~----~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~- 350 (672)
.. ....-... .+..+++...+.++.+. +++.....++..+.. .|++++|.+.++++++..
T Consensus 224 ~~~l~~~a~~~~l~----~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~-----~g~~~~A~~~l~~~l~~~p 294 (409)
T TIGR00540 224 FADLEQKAEIGLLD----EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLID-----CDDHDSAQEIIFDGLKKLG 294 (409)
T ss_pred HHHHHHHHHHHHHH----HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHH-----CCChHHHHHHHHHHHhhCC
Confidence 21 11111111 22333344455544432 377888888888875 579999999999998863
Q ss_pred -CHHH--HHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCH--HHHHHHHHHHHcCCCccCCHHHHHHHHHH--HHHc
Q 005877 351 -EAGG--HYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQ--KAFYQLAKMFHTGVGLKKNLHMATALYKL--VAER 421 (672)
Q Consensus 351 -~~~a--~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~--~a~~~L~~~y~~g~g~~~~~~~A~~~~~~--a~~~ 421 (672)
+... .......... .++..++.+.++++.+. +++ .....+|.++.. .+++++|.++|++ +.+.
T Consensus 295 d~~~~~~~~l~~~~~l~----~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~----~~~~~~A~~~le~a~a~~~ 366 (409)
T TIGR00540 295 DDRAISLPLCLPIPRLK----PEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK----HGEFIEAADAFKNVAACKE 366 (409)
T ss_pred CcccchhHHHHHhhhcC----CCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH----cccHHHHHHHHHHhHHhhc
Confidence 2221 1222233333 56788899999888764 567 667789999987 8999999999994 6555
Q ss_pred CC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 422 GP-WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 422 ~~-~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
.| +..+..+|.++...|+.++|..+|++++.+
T Consensus 367 ~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 367 QLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 53 455778999999999999999999998664
No 53
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.48 E-value=1.6e-10 Score=123.13 Aligned_cols=212 Identities=8% Similarity=0.009 Sum_probs=119.5
Q ss_pred hHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcC--CHH--------HHHH
Q 005877 217 GALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG--EPQ--------SMEF 284 (672)
Q Consensus 217 ~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~--~~~--------a~~~ 284 (672)
+.++...|++++|+..+++..+. +++.+...++.+|... +|+++|++.+.+..+.. ++. ++..
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~-----gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~ 234 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT-----GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIG 234 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 34445555555555555554333 4667777777777666 37777776666665532 111 1111
Q ss_pred HHHHHHcCCCCcCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC-CHHHHHHHHHH
Q 005877 285 LGEIYARGAGVERNYTKALEWLTHAA--RQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-EAGGHYNLGVM 361 (672)
Q Consensus 285 Lg~~y~~g~g~~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~ 361 (672)
+...... ..+.+...++++... ..+++.+...++..+.. .|+.++|...++++.+.. ++......+.+
T Consensus 235 l~~~~~~----~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~-----~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l 305 (398)
T PRK10747 235 LMDQAMA----DQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIE-----CDDHDTAQQIILDGLKRQYDERLVLLIPRL 305 (398)
T ss_pred HHHHHHH----hcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHhcCCCHHHHHHHhhc
Confidence 1111111 122233333333221 13466666677776664 457777777777776643 33222222222
Q ss_pred HHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChh-HHHHHHHHHHhcC
Q 005877 362 YYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS-SLSRWALESYLKG 438 (672)
Q Consensus 362 y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~-a~~~lg~~~~~~g 438 (672)
. .++.+++++..++..+ ++++.....+|.++.. .+++++|.++|+++++..|.. .+..++.++...|
T Consensus 306 --~----~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~----~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g 375 (398)
T PRK10747 306 --K----TNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMK----HGEWQEASLAFRAALKQRPDAYDYAWLADALDRLH 375 (398)
T ss_pred --c----CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Confidence 2 3566777777766655 3456667777777776 677777777777777776543 3466777777777
Q ss_pred CHHHHHHHHHHHHH
Q 005877 439 DVGKAFLLYSRMAE 452 (672)
Q Consensus 439 ~~~~A~~~~~~a~~ 452 (672)
+.++|..+|++++.
T Consensus 376 ~~~~A~~~~~~~l~ 389 (398)
T PRK10747 376 KPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHh
Confidence 77777777777654
No 54
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.48 E-value=1.8e-11 Score=124.81 Aligned_cols=213 Identities=16% Similarity=0.147 Sum_probs=139.4
Q ss_pred CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCc
Q 005877 262 DRTKALMWFSKAADK------GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEK 333 (672)
Q Consensus 262 ~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~ 333 (672)
..+.++..+.+.+.. +.+..++.+|.+|.. .+++++|+..|+++++. +++.+++.+|.++.. .
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~----~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~-----~ 111 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDS----LGLRALARNDFSQALALRPDMADAYNYLGIYLTQ-----A 111 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----C
Confidence 445666666666642 235667888888887 78888888888888765 477788888888875 5
Q ss_pred CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHH-HHHcCCCccCCHHH
Q 005877 334 KNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAK-MFHTGVGLKKNLHM 410 (672)
Q Consensus 334 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~-~y~~g~g~~~~~~~ 410 (672)
|++++|+..|+++++. +++.++.++|.++.. .+++++|++.|+++++..+......+.. +... .++.++
T Consensus 112 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~----~~~~~~ 183 (296)
T PRK11189 112 GNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY----GGRYELAQDDLLAFYQDDPNDPYRALWLYLAES----KLDPKQ 183 (296)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHc----cCCHHH
Confidence 6888888888888765 467788888888877 7788888888888877553332222211 2222 567788
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHH
Q 005877 411 ATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQC 490 (672)
Q Consensus 411 A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~ 490 (672)
|+..+++++...++..+. .+...+..|+..++ ..++.+.+.
T Consensus 184 A~~~l~~~~~~~~~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~------------------------------------- 224 (296)
T PRK11189 184 AKENLKQRYEKLDKEQWG-WNIVEFYLGKISEE-TLMERLKAG------------------------------------- 224 (296)
T ss_pred HHHHHHHHHhhCCccccH-HHHHHHHccCCCHH-HHHHHHHhc-------------------------------------
Confidence 888887766554433222 34444445544332 122222111
Q ss_pred HHHHHHHH--HhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 005877 491 AHSLWWQA--SEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQS 538 (672)
Q Consensus 491 A~~~~~~a--~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~ 538 (672)
++.+ ..+..+++++++|.+|. ..+++++|+.+|++|++.+
T Consensus 225 ----~~~~~~l~~~~~ea~~~Lg~~~~----~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 225 ----ATDNTELAERLCETYFYLAKYYL----SLGDLDEAAALFKLALANN 266 (296)
T ss_pred ----CCCcHHHHHHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHhC
Confidence 0000 12335678999999999 8999999999999998864
No 55
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.47 E-value=5.8e-13 Score=131.39 Aligned_cols=245 Identities=20% Similarity=0.219 Sum_probs=176.8
Q ss_pred cCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH--------hCCCHHHHHHHHHH
Q 005877 296 ERNYTKALEWLTHAARQQL------YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAA--------DNEEAGGHYNLGVM 361 (672)
Q Consensus 296 ~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~--------~~~~~~a~~~Lg~~ 361 (672)
.+++...+.+|+.|++-|- ...+..||..|+. .+||++|++|..--+ +.|.+.+.-|||..
T Consensus 30 ~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfy-----L~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 30 MGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFY-----LKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred ccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhh-----HhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 6777777777777777651 2235567777765 347888887754321 12567777788887
Q ss_pred HHcCCCchhcHHHHHHHHHHHH----HcC----CHHHHHHHHHHHHcC-C--C-------------ccCCHHHHHHHHHH
Q 005877 362 YYKGIGVKRDVKLACKYFLVAA----NAG----HQKAFYQLAKMFHTG-V--G-------------LKKNLHMATALYKL 417 (672)
Q Consensus 362 y~~g~g~~~~~~~A~~~~~~A~----~~~----~~~a~~~L~~~y~~g-~--g-------------~~~~~~~A~~~~~~ 417 (672)
+.- .|.+++|+.+..+-+ +.| ...|+|+||.+|..- . | +...++.|+++|..
T Consensus 105 lKv----~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~e 180 (639)
T KOG1130|consen 105 LKV----KGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYME 180 (639)
T ss_pred hhh----hcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHH
Confidence 766 788888887776643 233 457888888887541 1 1 23345677777777
Q ss_pred HHHcC----C----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHHhCCCCcccCCCCC
Q 005877 418 VAERG----P----WSSLSRWALESYLKGDVGKAFLLYSRMAEL----GY----EVAQSNAAWILDKYGEGSMCMGESGF 481 (672)
Q Consensus 418 a~~~~----~----~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~----g~----~~a~~nla~~l~~~~~~~~~~~~~~~ 481 (672)
-++.. + -.++-+||..||..|||+.|+...+.=++. |+ -.|+.|+|.++.-
T Consensus 181 NL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif------------- 247 (639)
T KOG1130|consen 181 NLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF------------- 247 (639)
T ss_pred HHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh-------------
Confidence 65543 2 235778999999999999999987765433 43 3567788887765
Q ss_pred CCchHhHHHHHHHHHH----HHhCCC----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH----hc----CCHHHHHH
Q 005877 482 CTDAERHQCAHSLWWQ----ASEQGN----EHAALLIGDAYYYGRGTQRDYERAAEAYMHAR----SQ----SNAQAMFN 545 (672)
Q Consensus 482 ~~~~~~~~~A~~~~~~----a~~~~~----~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~----~~----~~~~a~~~ 545 (672)
.++++.|+++|++ |++.++ +.+.|.||..|. ..+++++||.|+.+=+ +. +...+.+.
T Consensus 248 ---lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtyt----ll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwS 320 (639)
T KOG1130|consen 248 ---LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYT----LLKEVQKAITYHQRHLAIAQELEDRIGELRACWS 320 (639)
T ss_pred ---hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 6688999999985 567776 677899999999 8899999999998832 22 67899999
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHhc
Q 005877 546 LGYMHEHGQGLPLDLHLAKRYYDQALEV 573 (672)
Q Consensus 546 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 573 (672)
||..|-. .++.++|+.|.++.++.
T Consensus 321 Lgna~~a----lg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 321 LGNAFNA----LGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHh----hhhHHHHHHHHHHHHHH
Confidence 9999876 78999999988887654
No 56
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=99.46 E-value=4e-12 Score=112.10 Aligned_cols=178 Identities=22% Similarity=0.326 Sum_probs=156.6
Q ss_pred CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCC-CcCCHHHHHHHHHHHHHcCCHHH
Q 005877 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-GEPQSMEFLGEIYARGAG-VERNYTKALEWLTHAARQQLYSA 317 (672)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g-~~~~~~~A~~~~~~a~~~~~~~a 317 (672)
..|++...||..+ .|+.+|+++|...|++-.+. +.+.+.+.+|..+..|.| ..++...|+++|+.+.+.+++.+
T Consensus 32 K~Pe~C~lLgdYl----Egi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~~~a 107 (248)
T KOG4014|consen 32 KRPESCQLLGDYL----EGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANIPQA 107 (248)
T ss_pred CCchHHHHHHHHH----HHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCCHHH
Confidence 5789999999877 46788999999999988774 689999999999998854 67899999999999999999999
Q ss_pred HHHHHHHHHcCCCCCcC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC----------C----------chhcHHHH
Q 005877 318 YNGIGYLYVKGYGVEKK--NYTKAKEYFEKAADNEEAGGHYNLGVMYYKGI----------G----------VKRDVKLA 375 (672)
Q Consensus 318 ~~~Lg~~y~~g~g~~~~--~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~----------g----------~~~~~~~A 375 (672)
...+|.+...|.-.... |..+|.+|+.+|.+.++..+.++|..+|+.|. | +.+|.++|
T Consensus 108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka 187 (248)
T KOG4014|consen 108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKA 187 (248)
T ss_pred HhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHH
Confidence 99999999887443333 58899999999999999999999999999872 2 23799999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHc
Q 005877 376 CKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER 421 (672)
Q Consensus 376 ~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~ 421 (672)
.++--+|.+.+++.+--|+.+||..|-|+.+|.++|..|=.+|.+.
T Consensus 188 ~qfa~kACel~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 188 LQFAIKACELDIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred HHHHHHHHhcCChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888764
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.46 E-value=3.2e-11 Score=118.29 Aligned_cols=190 Identities=20% Similarity=0.152 Sum_probs=160.0
Q ss_pred CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHH
Q 005877 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYS 316 (672)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~ 316 (672)
.+.+++.+|.++... +++++|+++++++++. .++.++..+|.+|.. .+++++|+.+|+++++. .+..
T Consensus 30 ~~~~~~~la~~~~~~-----~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~ 100 (234)
T TIGR02521 30 AAKIRVQLALGYLEQ-----GDLEVAKENLDKALEHDPDDYLAYLALALYYQQ----LGELEKAEDSFRRALTLNPNNGD 100 (234)
T ss_pred HHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHH
Confidence 467888899999887 4999999999998874 578889999999998 89999999999999875 4677
Q ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHH
Q 005877 317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKA 390 (672)
Q Consensus 317 a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a 390 (672)
+...+|.++.. .|++++|+.+|+++++. .....++++|.++.. .+++++|..+|.++++. +++.+
T Consensus 101 ~~~~~~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 171 (234)
T TIGR02521 101 VLNNYGTFLCQ-----QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK----AGDFDKAEKYLTRALQIDPQRPES 171 (234)
T ss_pred HHHHHHHHHHH-----cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCChHH
Confidence 88899999985 57999999999999874 356788899999988 89999999999999875 35778
Q ss_pred HHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005877 391 FYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (672)
Q Consensus 391 ~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 452 (672)
+..++.++.. .+++++|+.+++++++..+ +..+..++..+...|+.++|..+.+....
T Consensus 172 ~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 172 LLELAELYYL----RGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 8999999987 8999999999999988753 44566778888889999999988776544
No 58
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.44 E-value=1.2e-09 Score=118.49 Aligned_cols=275 Identities=14% Similarity=0.114 Sum_probs=136.4
Q ss_pred hhHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 005877 216 KGALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYAR 291 (672)
Q Consensus 216 ~~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~ 291 (672)
+|.+|..+|+.+++...+-.++.. ++.+-+..++....+. +++++|+-+|.+|++. .+....+.-..+|.+
T Consensus 179 L~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~-----~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~ 253 (895)
T KOG2076|consen 179 LGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL-----GNINQARYCYSRAIQANPSNWELIYERSSLYQK 253 (895)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc-----ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 444444444444444444443332 4555566666655555 2566666666666553 344555555556655
Q ss_pred CCCCcCCHHHHHHHHHHHHHcCCH------HH-HHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC----CHHHHHHHHH
Q 005877 292 GAGVERNYTKALEWLTHAARQQLY------SA-YNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE----EAGGHYNLGV 360 (672)
Q Consensus 292 g~g~~~~~~~A~~~~~~a~~~~~~------~a-~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~ 360 (672)
.|+...|+.-|.+.+....+ .. .......+.. .++.+.|++.++.+...+ .-+-.+-++.
T Consensus 254 ----~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~-----~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ae 324 (895)
T KOG2076|consen 254 ----TGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT-----HNERERAAKALEGALSKEKDEASLEDLNILAE 324 (895)
T ss_pred ----hChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHhhccccccccHHHHHHH
Confidence 56666666666666554321 11 1111222221 123355666655555421 1122334444
Q ss_pred HHHcCCCchhcHHHHHHHHHHHHH-------------------------cC-----CHHHHHHHHHHHHcCCCccCCHHH
Q 005877 361 MYYKGIGVKRDVKLACKYFLVAAN-------------------------AG-----HQKAFYQLAKMFHTGVGLKKNLHM 410 (672)
Q Consensus 361 ~y~~g~g~~~~~~~A~~~~~~A~~-------------------------~~-----~~~a~~~L~~~y~~g~g~~~~~~~ 410 (672)
+++. ...++++......-.. .+ +... ..+..++.. .+..+.
T Consensus 325 l~l~----~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~----L~~~e~ 395 (895)
T KOG2076|consen 325 LFLK----NKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVH----LKEREL 395 (895)
T ss_pred HHHH----hHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhc----ccccch
Confidence 4444 4444444444333221 00 0011 122222221 223333
Q ss_pred HHHHHHHHHHcC-----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCcccCCCCCC
Q 005877 411 ATALYKLVAERG-----PWSSLSRWALESYLKGDVGKAFLLYSRMAEL---GYEVAQSNAAWILDKYGEGSMCMGESGFC 482 (672)
Q Consensus 411 A~~~~~~a~~~~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~---g~~~a~~nla~~l~~~~~~~~~~~~~~~~ 482 (672)
.........+.. .++-+..++.++...|++..|+.+|...... ++...+..+|.+|..
T Consensus 396 ~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~-------------- 461 (895)
T KOG2076|consen 396 LEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME-------------- 461 (895)
T ss_pred HHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH--------------
Confidence 333333333333 2344666666777777777777777666543 244556666666665
Q ss_pred CchHhHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 005877 483 TDAERHQCAHSLWWQAS--EQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMH 533 (672)
Q Consensus 483 ~~~~~~~~A~~~~~~a~--~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~ 533 (672)
.+.+++|+..|++++ .+++.++.++|+.+|. ..|+.++|.+.+++
T Consensus 462 --l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~----~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 462 --LGEYEEAIEFYEKVLILAPDNLDARITLASLYQ----QLGNHEKALETLEQ 508 (895)
T ss_pred --HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHH----hcCCHHHHHHHHhc
Confidence 566677777777654 3455777777777777 66777777766666
No 59
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.43 E-value=2.5e-11 Score=129.04 Aligned_cols=133 Identities=20% Similarity=0.210 Sum_probs=83.7
Q ss_pred HHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC-------CCH---HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhh
Q 005877 126 ARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG-------GNI---QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFL 195 (672)
Q Consensus 126 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~-------~~~---~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~ 195 (672)
+...|+.+|.. .+++++|+.+++.|++. .++ ..+..+|.+|...+++++|+..|++++++....+.
T Consensus 201 ~~~~La~~y~~----~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G 276 (508)
T KOG1840|consen 201 TLRNLAEMYAV----QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG 276 (508)
T ss_pred HHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 44456666666 67777777777776653 232 33334677777777777777777776665433221
Q ss_pred ccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH
Q 005877 196 ISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD 275 (672)
Q Consensus 196 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~ 275 (672)
. . ++.-+..+.+|+.+|... +++++|..++++|++
T Consensus 277 ~--~--------------------------------------h~~va~~l~nLa~ly~~~-----GKf~EA~~~~e~Al~ 311 (508)
T KOG1840|consen 277 E--D--------------------------------------HPAVAATLNNLAVLYYKQ-----GKFAEAEEYCERALE 311 (508)
T ss_pred C--C--------------------------------------CHHHHHHHHHHHHHHhcc-----CChHHHHHHHHHHHH
Confidence 1 0 011245678888888777 488888888888876
Q ss_pred c-------C---CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH
Q 005877 276 K-------G---EPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR 311 (672)
Q Consensus 276 ~-------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 311 (672)
. . -+..+..++.++.. .+.+++|+.+++++++
T Consensus 312 I~~~~~~~~~~~v~~~l~~~~~~~~~----~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 312 IYEKLLGASHPEVAAQLSELAAILQS----MNEYEEAKKLLQKALK 353 (508)
T ss_pred HHHHhhccChHHHHHHHHHHHHHHHH----hcchhHHHHHHHHHHH
Confidence 2 1 23455666666766 7777777777777664
No 60
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.43 E-value=6.3e-10 Score=118.80 Aligned_cols=365 Identities=15% Similarity=0.113 Sum_probs=261.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHc-
Q 005877 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK- 239 (672)
Q Consensus 161 ~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~- 239 (672)
..+-.|......-|+++.+.+.|++++...... .+.+..++..+..-|...+|+..++.....
T Consensus 324 ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~----------------~e~w~~~als~saag~~s~Av~ll~~~~~~~ 387 (799)
T KOG4162|consen 324 AIFDHLTFALSRCGQFEVLAEQFEQALPFSFGE----------------HERWYQLALSYSAAGSDSKAVNLLRESLKKS 387 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh----------------HHHHHHHHHHHHHhccchHHHHHHHhhcccc
Confidence 334445555666788888888888876533221 123445777788888899999999987543
Q ss_pred ---CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-----C--CHHHHHHHHHHHHcCCCC-------cCCHHHH
Q 005877 240 ---GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-----G--EPQSMEFLGEIYARGAGV-------ERNYTKA 302 (672)
Q Consensus 240 ---~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-----~--~~~a~~~Lg~~y~~g~g~-------~~~~~~A 302 (672)
.++..+.....++.... +..+++++|-.++++. + .+.++..+|..|..-... ..-..++
T Consensus 388 ~~ps~~s~~Lmasklc~e~l----~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ks 463 (799)
T KOG4162|consen 388 EQPSDISVLLMASKLCIERL----KLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKS 463 (799)
T ss_pred cCCCcchHHHHHHHHHHhch----hhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHH
Confidence 46788888888887653 7899999999999983 1 478888899888542211 1235678
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHcCCCchhcHHHHHH
Q 005877 303 LEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN---EEAGGHYNLGVMYYKGIGVKRDVKLACK 377 (672)
Q Consensus 303 ~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 377 (672)
+..++++++. .|+.+.+.++.-|.. +++.+.|.++.+++++. +++.++..|+.+... .+++..|+.
T Consensus 464 lqale~av~~d~~dp~~if~lalq~A~-----~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa----~kr~~~Al~ 534 (799)
T KOG4162|consen 464 LQALEEAVQFDPTDPLVIFYLALQYAE-----QRQLTSALDYAREALALNRGDSAKAWHLLALVLSA----QKRLKEALD 534 (799)
T ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHH-----HHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhh----hhhhHHHHH
Confidence 8888888765 489999999999974 56999999999999887 478999999999988 899999998
Q ss_pred HHHHHHHc-CC-----------------HH-----HHHHHHH---------HHHcC--------C-CccCCHHHHHHHHH
Q 005877 378 YFLVAANA-GH-----------------QK-----AFYQLAK---------MFHTG--------V-GLKKNLHMATALYK 416 (672)
Q Consensus 378 ~~~~A~~~-~~-----------------~~-----a~~~L~~---------~y~~g--------~-g~~~~~~~A~~~~~ 416 (672)
...-+++- ++ .+ ....|+. ...+| . ....+..+|++-++
T Consensus 535 vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr 614 (799)
T KOG4162|consen 535 VVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSR 614 (799)
T ss_pred HHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhH
Confidence 88887652 22 00 0001110 00011 1 12335555555555
Q ss_pred HHHHc--------C-------------Chh-------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHH--HHHHHHHH
Q 005877 417 LVAER--------G-------------PWS-------SLSRWALESYLKGDVGKAFLLYSRMAELGYEVA--QSNAAWIL 466 (672)
Q Consensus 417 ~a~~~--------~-------------~~~-------a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a--~~nla~~l 466 (672)
++... + +.. .+...+..+...++.++|..++.++....+..+ ++-.|.++
T Consensus 615 ~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~ 694 (799)
T KOG4162|consen 615 YLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLL 694 (799)
T ss_pred HHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHH
Confidence 44211 1 111 123446667778899999999999977764443 34455665
Q ss_pred HHhCCCCcccCCCCCCCchHhHHHHHHHHHH--HHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHH--HHHHHHhc--CCH
Q 005877 467 DKYGEGSMCMGESGFCTDAERHQCAHSLWWQ--ASEQGNEHAALLIGDAYYYGRGTQRDYERAAE--AYMHARSQ--SNA 540 (672)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~--a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~--~~~~A~~~--~~~ 540 (672)
.. .+.+.+|.+.|.- +++|+++.++..+|.++. ..|+..-|.. .++.|++. .++
T Consensus 695 ~~----------------~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll----e~G~~~la~~~~~L~dalr~dp~n~ 754 (799)
T KOG4162|consen 695 EV----------------KGQLEEAKEAFLVALALDPDHVPSMTALAELLL----ELGSPRLAEKRSLLSDALRLDPLNH 754 (799)
T ss_pred HH----------------HHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH----HhCCcchHHHHHHHHHHHhhCCCCH
Confidence 55 7789999999985 578889999999999999 4455555555 99999874 689
Q ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877 541 QAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK 578 (672)
Q Consensus 541 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 578 (672)
++++.||.++.. .||.+.|.++|+-|+++.+...
T Consensus 755 eaW~~LG~v~k~----~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 755 EAWYYLGEVFKK----LGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHHHHH----ccchHHHHHHHHHHHhhccCCC
Confidence 999999999988 9999999999999999986654
No 61
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=99.42 E-value=5.3e-12 Score=111.35 Aligned_cols=199 Identities=22% Similarity=0.313 Sum_probs=158.3
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHH
Q 005877 277 GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGH 355 (672)
Q Consensus 277 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~ 355 (672)
..|++...||....- +++|+++|.+.|+.-.+. +.+.+.+.+|..++.|.|...++...|+.+|+.+.+.+++.+.
T Consensus 32 K~Pe~C~lLgdYlEg---i~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~~~aC 108 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEG---IQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANIPQAC 108 (248)
T ss_pred CCchHHHHHHHHHHH---HHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCCHHHH
Confidence 568999999987764 589999999999988865 5899999999999999887778999999999999999999999
Q ss_pred HHHHHHHHcCCC---chhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 005877 356 YNLGVMYYKGIG---VKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWAL 432 (672)
Q Consensus 356 ~~Lg~~y~~g~g---~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 432 (672)
.++|.++..|.- ..-|..+|.+++.+|.+.++..+-++|..+|..|. +++.. ..|+
T Consensus 109 ~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~~aCf~LS~m~~~g~------~k~~t-------~ap~-------- 167 (248)
T KOG4014|consen 109 RYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDGEACFLLSTMYMGGK------EKFKT-------NAPG-------- 167 (248)
T ss_pred hhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCchHHHHHHHHHhccc------hhhcc-------cCCC--------
Confidence 999999988743 33468899999999999999999999999998641 11000 0000
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHH
Q 005877 433 ESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGD 512 (672)
Q Consensus 433 ~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~ 512 (672)
.+.+.+. +.
T Consensus 168 ----------------------------------------------~g~p~~~-------------------------~~ 176 (248)
T KOG4014|consen 168 ----------------------------------------------EGKPLDR-------------------------AE 176 (248)
T ss_pred ----------------------------------------------CCCCcch-------------------------hh
Confidence 0111100 11
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcC
Q 005877 513 AYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVD 574 (672)
Q Consensus 513 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 574 (672)
.+. ..+|.++|.++-.+|.+++++.+--|+..||..|.||++|.++|..|=++|.++.
T Consensus 177 ~~~----~~kDMdka~qfa~kACel~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~ 234 (248)
T KOG4014|consen 177 LGS----LSKDMDKALQFAIKACELDIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM 234 (248)
T ss_pred hhh----hhHhHHHHHHHHHHHHhcCChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence 112 4578999999999999999999999999999999999999999999999888753
No 62
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=4.9e-10 Score=115.31 Aligned_cols=230 Identities=23% Similarity=0.189 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC-------
Q 005877 279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE------- 350 (672)
Q Consensus 279 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~------- 350 (672)
+...-.||..... ..+++.|++.|.++++.. +..-+.+.+-+|+. .+.+.+.+..-..+++.+
T Consensus 224 a~~ek~lgnaayk----kk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e-----~~~~~~c~~~c~~a~E~gre~rad~ 294 (539)
T KOG0548|consen 224 AHKEKELGNAAYK----KKDFETAIQHYAKALELATDITYLNNIAAVYLE-----RGKYAECIELCEKAVEVGRELRADY 294 (539)
T ss_pred hhHHHHHHHHHHH----hhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHh-----ccHHHHhhcchHHHHHHhHHHHHHH
Confidence 3455678888777 889999999999998775 33446677777774 557777777777777664
Q ss_pred --CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChh--H
Q 005877 351 --EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS--S 426 (672)
Q Consensus 351 --~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~--a 426 (672)
.+.+...+|..|.. .++++.++.+|++++...-. ..+... .++.++++...+..+-.++.. .
T Consensus 295 klIak~~~r~g~a~~k----~~~~~~ai~~~~kaLte~Rt------~~~ls~----lk~~Ek~~k~~e~~a~~~pe~A~e 360 (539)
T KOG0548|consen 295 KLIAKALARLGNAYTK----REDYEGAIKYYQKALTEHRT------PDLLSK----LKEAEKALKEAERKAYINPEKAEE 360 (539)
T ss_pred HHHHHHHHHhhhhhhh----HHhHHHHHHHHHHHhhhhcC------HHHHHH----HHHHHHHHHHHHHHHhhChhHHHH
Confidence 23344456667766 78999999999997664321 222222 455666666666665555533 3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC--
Q 005877 427 LSRWALESYLKGDVGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG-- 502 (672)
Q Consensus 427 ~~~lg~~~~~~g~~~~A~~~~~~a~~~g--~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-- 502 (672)
...-|..++..|||.+|+..|.+|+... ++....|.|.+|.+ .+.+.+|++--+++++.+
T Consensus 361 ~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~k----------------L~~~~~aL~Da~~~ieL~p~ 424 (539)
T KOG0548|consen 361 EREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLK----------------LGEYPEALKDAKKCIELDPN 424 (539)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH----------------HhhHHHHHHHHHHHHhcCch
Confidence 4556899999999999999999998765 77778899999888 667788888877776664
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 005877 503 NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHE 551 (672)
Q Consensus 503 ~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~ 551 (672)
...++++=|.+++ .+++|++|.+.|+++++. .+..+...+..+++
T Consensus 425 ~~kgy~RKg~al~----~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 425 FIKAYLRKGAALR----AMKEYDKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 4678888899999 889999999999999886 45566666666665
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.40 E-value=1.7e-10 Score=122.66 Aligned_cols=225 Identities=20% Similarity=0.196 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-------CCH---HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC
Q 005877 280 QSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-------QLY---SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN 349 (672)
Q Consensus 280 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~~---~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~ 349 (672)
.+...|+.+|.. ++++++|+.+++++++. .++ ..+..+|.+|.. ++++++|+..|++|+..
T Consensus 200 ~~~~~La~~y~~----~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~-----~~k~~eAv~ly~~AL~i 270 (508)
T KOG1840|consen 200 RTLRNLAEMYAV----QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRS-----LGKYDEAVNLYEEALTI 270 (508)
T ss_pred HHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHH-----hccHHHHHHHHHHHHHH
Confidence 566779999998 99999999999999875 333 335569999986 67999999999999864
Q ss_pred -------C---CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHHcCCCccCCHH
Q 005877 350 -------E---EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-------GH---QKAFYQLAKMFHTGVGLKKNLH 409 (672)
Q Consensus 350 -------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-------~~---~~a~~~L~~~y~~g~g~~~~~~ 409 (672)
. .+..+.+|+.+|.. .+++++|..++++|++. .+ ...+.+++.++.. .+.++
T Consensus 271 ~e~~~G~~h~~va~~l~nLa~ly~~----~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~----~~~~E 342 (508)
T KOG1840|consen 271 REEVFGEDHPAVAATLNNLAVLYYK----QGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQS----MNEYE 342 (508)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhc----cCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH----hcchh
Confidence 2 25678899999988 89999999999999762 12 3456788888887 89999
Q ss_pred HHHHHHHHHHHcC-------C---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHh
Q 005877 410 MATALYKLVAERG-------P---WSSLSRWALESYLKGDVGKAFLLYSRMAELG----------YEVAQSNAAWILDKY 469 (672)
Q Consensus 410 ~A~~~~~~a~~~~-------~---~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g----------~~~a~~nla~~l~~~ 469 (672)
+|+.+|+++++.- + +....++|..|+..|++++|..+|++|+..- .....+++|-.+.+.
T Consensus 343 ea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~ 422 (508)
T KOG1840|consen 343 EAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEEL 422 (508)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHh
Confidence 9999999987652 2 2357899999999999999999999997652 245566777776551
Q ss_pred CCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHH---HHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 005877 470 GEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHA---ALLIGDAYYYGRGTQRDYERAAEAYMHAR 535 (672)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a---~~~lG~~y~~g~g~~~d~~~A~~~~~~A~ 535 (672)
. .+.....-+.+++.+. ++.-+++++. +-+|+-+|. .+|+++.|+++.++++
T Consensus 423 k---------~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~----~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 423 K---------KYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYR----AQGNYEAAEELEEKVL 477 (508)
T ss_pred c---------ccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHH----HcccHHHHHHHHHHHH
Confidence 1 1111122344444444 5555554333 337777777 6777777777666654
No 64
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.39 E-value=6.9e-09 Score=113.37 Aligned_cols=180 Identities=16% Similarity=0.030 Sum_probs=147.5
Q ss_pred hhhHHHHHHHHHHHHhC--CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHH
Q 005877 105 VRVMEEATSEVESAAME--GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAV 180 (672)
Q Consensus 105 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~ 180 (672)
.++.+.|+..|-+++.. ..+.++..||.+|.. --|..+|..+|.+|-+ .++..+--.++..|.+..+.+.|.
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd----~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~ 546 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRD----SDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAF 546 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHH
Confidence 46678999999997665 568899999999998 5599999999999987 567788888999999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCC
Q 005877 181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQA--QKGNAGAMYKIGLFYYFGLRG 258 (672)
Q Consensus 181 ~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa--~~~~~~a~~~Lg~~y~~~~~~ 258 (672)
...-++.+..+... ....+...|..|...++..+|+..|+.+. ++.|.++...||.+|...|
T Consensus 547 ~I~l~~~qka~a~~--------------~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sG-- 610 (1238)
T KOG1127|consen 547 EICLRAAQKAPAFA--------------CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESG-- 610 (1238)
T ss_pred HHHHHHhhhchHHH--------------HHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcC--
Confidence 88666555443321 11223347888889999999999999985 4569999999999999884
Q ss_pred cccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH
Q 005877 259 LRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR 311 (672)
Q Consensus 259 ~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 311 (672)
.+..|++.|.||.. +.+..+.+..+.+--. .|.|++|+..+...+.
T Consensus 611 ---ry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd----~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 611 ---RYSHALKVFTKASLLRPLSKYGRFKEAVMECD----NGKYKEALDALGLIIY 658 (1238)
T ss_pred ---ceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH----hhhHHHHHHHHHHHHH
Confidence 99999999999876 4677888889998888 8999999999888764
No 65
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=4.5e-10 Score=108.38 Aligned_cols=266 Identities=15% Similarity=0.175 Sum_probs=181.2
Q ss_pred hHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh--CCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC-CC-----
Q 005877 88 SYYITISKMMSAVTNGDVRVMEEATSEVESAAM--EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG-GN----- 159 (672)
Q Consensus 88 ~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~-~~----- 159 (672)
-|..|+..+. .++.++|+..|...++ ++..+++..||.+|.. .|..++|+..++-..+. +-
T Consensus 38 ~Yv~GlNfLL-------s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRs----RGEvDRAIRiHQ~L~~spdlT~~qr 106 (389)
T COG2956 38 DYVKGLNFLL-------SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRS----RGEVDRAIRIHQTLLESPDLTFEQR 106 (389)
T ss_pred HHHhHHHHHh-------hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHh----cchHHHHHHHHHHHhcCCCCchHHH
Confidence 4667777775 4677899999999554 4668999999999999 99999999999998874 32
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHc
Q 005877 160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK 239 (672)
Q Consensus 160 ~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~ 239 (672)
.-++..||.=|+..|-+|.|...|..+++... ..+++...+-.+|....+.++||+.-++....
T Consensus 107 ~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e----------------fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~ 170 (389)
T COG2956 107 LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE----------------FAEGALQQLLNIYQATREWEKAIDVAERLVKL 170 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh----------------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 36788899999999999999999998876431 12344556777788888888888888877666
Q ss_pred CCHHH-------HHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH
Q 005877 240 GNAGA-------MYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAA 310 (672)
Q Consensus 240 ~~~~a-------~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 310 (672)
+.-.. +..|+..+... .|.++|+.++++|+. +....+-..+|.+... .|++++|++.++.+.
T Consensus 171 ~~q~~~~eIAqfyCELAq~~~~~-----~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~----~g~y~~AV~~~e~v~ 241 (389)
T COG2956 171 GGQTYRVEIAQFYCELAQQALAS-----SDVDRARELLKKALQADKKCVRASIILGRVELA----KGDYQKAVEALERVL 241 (389)
T ss_pred CCccchhHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHhhCccceehhhhhhHHHHh----ccchHHHHHHHHHHH
Confidence 54333 33444444433 477777788877765 3566777777777777 777777777777777
Q ss_pred HcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc-
Q 005877 311 RQQ---LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA- 385 (672)
Q Consensus 311 ~~~---~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~- 385 (672)
+++ -++....|-.+|.. .|+.++.+.++.++.+.. .+++-..+..+-.. ..-.+.|..+..+-++.
T Consensus 242 eQn~~yl~evl~~L~~~Y~~-----lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~----~~G~~~Aq~~l~~Ql~r~ 312 (389)
T COG2956 242 EQNPEYLSEVLEMLYECYAQ-----LGKPAEGLNFLRRAMETNTGADAELMLADLIEL----QEGIDAAQAYLTRQLRRK 312 (389)
T ss_pred HhChHHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHccCCccHHHHHHHHHHH----hhChHHHHHHHHHHHhhC
Confidence 765 34456666667764 457777777777776653 44555555555544 33344444444443333
Q ss_pred CCHHHHHHHHHHH
Q 005877 386 GHQKAFYQLAKMF 398 (672)
Q Consensus 386 ~~~~a~~~L~~~y 398 (672)
......+.|-...
T Consensus 313 Pt~~gf~rl~~~~ 325 (389)
T COG2956 313 PTMRGFHRLMDYH 325 (389)
T ss_pred CcHHHHHHHHHhh
Confidence 2344444444433
No 66
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.38 E-value=7.8e-12 Score=123.53 Aligned_cols=252 Identities=19% Similarity=0.208 Sum_probs=167.1
Q ss_pred hhhHHHHHHHHHHHHhCCC------hHHHHHHHHHhhcCCcccCCHHHHHHHHHHHH--------hCCCHHHHHHHHHHH
Q 005877 105 VRVMEEATSEVESAAMEGD------PHARSVLGFLYGMGMMRERNKGKAFLYHHFAA--------EGGNIQSKMAVAYTY 170 (672)
Q Consensus 105 ~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~--------~~~~~~a~~~Lg~~y 170 (672)
.+++...+.+|+.+.+-|- +..+..||..|.. .+||++|++|++-=+ ..|...+.-+||..+
T Consensus 30 ~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfy----L~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 30 MGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFY----LKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred ccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhh----HhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 5788888888888877653 3456678888887 888999988876422 136667777888888
Q ss_pred hccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 005877 171 LRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGL 250 (672)
Q Consensus 171 ~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~ 250 (672)
.-.|.+++|+.+..+-++.... ++ -..+...++|+||.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~are-----------------------Lg-------------------Drv~e~RAlYNlgn 143 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARE-----------------------LG-------------------DRVLESRALYNLGN 143 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHH-----------------------Hh-------------------HHHhhhHHHhhhhh
Confidence 8888888888777765543210 00 11246789999999
Q ss_pred HHHhcCCC---------------cccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHH
Q 005877 251 FYYFGLRG---------------LRRDRTKALMWFSKAADK----GE----PQSMEFLGEIYARGAGVERNYTKALEWLT 307 (672)
Q Consensus 251 ~y~~~~~~---------------~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 307 (672)
+|...+.. +...++.|.++|..-++. |+ ..++.+||..|.- .||++.|+...+
T Consensus 144 vYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYl----LGdf~~ai~~H~ 219 (639)
T KOG1130|consen 144 VYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYL----LGDFDQAIHFHK 219 (639)
T ss_pred hhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeee----eccHHHHHHHHH
Confidence 99877521 122455666677665542 33 3566777777776 889999988877
Q ss_pred HHHHc----CC----HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH----hCC----CHHHHHHHHHHHHcCCCchhc
Q 005877 308 HAARQ----QL----YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAA----DNE----EAGGHYNLGVMYYKGIGVKRD 371 (672)
Q Consensus 308 ~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~----~~~----~~~a~~~Lg~~y~~g~g~~~~ 371 (672)
.-++. |+ -.++.+||.+|.. .++++.|+++|++.+ +.+ .+.++|.||..|.- .++
T Consensus 220 ~RL~ia~efGDrAaeRRA~sNlgN~hif-----lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl----l~e 290 (639)
T KOG1130|consen 220 LRLEIAQEFGDRAAERRAHSNLGNCHIF-----LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL----LKE 290 (639)
T ss_pred HHHHHHHHhhhHHHHHHhhcccchhhhh-----hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH----HHH
Confidence 65432 33 2356778888875 568888888888764 333 35667788888877 678
Q ss_pred HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHH
Q 005877 372 VKLACKYFLVAAN--------AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVA 419 (672)
Q Consensus 372 ~~~A~~~~~~A~~--------~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~ 419 (672)
+++|+.|+.+-+. .|...+.+.||..|.. .++.++|+.+.++.+
T Consensus 291 ~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a----lg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 291 VQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA----LGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh----hhhHHHHHHHHHHHH
Confidence 8888888776422 2344555666655554 555555555555543
No 67
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.37 E-value=4.5e-11 Score=123.81 Aligned_cols=94 Identities=19% Similarity=0.197 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh--CCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHH
Q 005877 88 SYYITISKMMSAVTNGDVRVMEEATSEVESAAM--EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSK 163 (672)
Q Consensus 88 ~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~ 163 (672)
=|..|..+|. .|++.+|+-.|+.++. |++.+|+-.||..... ..+...|+..++++.+ ++|.+++
T Consensus 288 Pf~eG~~lm~-------nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaE----NE~E~~ai~AL~rcl~LdP~NleaL 356 (579)
T KOG1125|consen 288 PFKEGCNLMK-------NGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAE----NENEQNAISALRRCLELDPTNLEAL 356 (579)
T ss_pred hHHHHHHHHh-------cCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhh----ccchHHHHHHHHHHHhcCCccHHHH
Confidence 4778888885 5889999999999764 5899999999999988 8889999999999987 7999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHh
Q 005877 164 MAVAYTYLRQDMHDKAVKLYAELAEIAVN 192 (672)
Q Consensus 164 ~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~ 192 (672)
+.||..|...+.-..|++++.+=+...++
T Consensus 357 maLAVSytNeg~q~~Al~~L~~Wi~~~p~ 385 (579)
T KOG1125|consen 357 MALAVSYTNEGLQNQALKMLDKWIRNKPK 385 (579)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999988776544
No 68
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.2e-09 Score=110.62 Aligned_cols=396 Identities=15% Similarity=0.054 Sum_probs=239.8
Q ss_pred hhhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHH
Q 005877 105 VRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAV 180 (672)
Q Consensus 105 ~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~ 180 (672)
.+||+.|+..|..++ +++|.--+.+-.-.|.. .+++.+|+.--.+.++ +.=+.++..+|..+.-.|++++|+
T Consensus 15 ~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~----~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYAS----LGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred cccHHHHHHHHHHHHccCCCccchhcchHHHHHH----HhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHH
Confidence 688999999999965 45666666677777777 8889999888888877 456788999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 005877 181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLR 260 (672)
Q Consensus 181 ~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~ 260 (672)
.-|.+-++..+++... ..++...+ ..++. +-+.+ ..|..+-.|...=.....-..
T Consensus 91 ~ay~~GL~~d~~n~~L----------------~~gl~~a~--~~~~~-~~~~~------~~p~~~~~l~~~p~t~~~~~~ 145 (539)
T KOG0548|consen 91 LAYSEGLEKDPSNKQL----------------KTGLAQAY--LEDYA-ADQLF------TKPYFHEKLANLPLTNYSLSD 145 (539)
T ss_pred HHHHHHhhcCCchHHH----------------HHhHHHhh--hHHHH-hhhhc------cCcHHHHHhhcChhhhhhhcc
Confidence 9999988876543211 11122222 00000 00000 122222222111000000000
Q ss_pred cCHHHHHHHHHH---HHH--cCCHHHHHHHHHHHHcCCC-------------------------CcCCHHHHHHHHHHHH
Q 005877 261 RDRTKALMWFSK---AAD--KGEPQSMEFLGEIYARGAG-------------------------VERNYTKALEWLTHAA 310 (672)
Q Consensus 261 ~~~~~A~~~~~~---a~~--~~~~~a~~~Lg~~y~~g~g-------------------------~~~~~~~A~~~~~~a~ 310 (672)
.++.+-++.+++ .+. ..++..+-.+|.+...+.+ ...|..+-.+
T Consensus 146 ~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~------ 219 (539)
T KOG0548|consen 146 PAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERR------ 219 (539)
T ss_pred HHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHH------
Confidence 011111111111 010 1244445555544332111 0001111001
Q ss_pred HcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCC-H
Q 005877 311 RQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGH-Q 388 (672)
Q Consensus 311 ~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~-~ 388 (672)
..-.......||..... +.++..|++.|.++++.+ +..-+.+.+-.|.. .+.+.+.+....++++.|- .
T Consensus 220 ~k~~a~~ek~lgnaayk-----kk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e----~~~~~~c~~~c~~a~E~gre~ 290 (539)
T KOG0548|consen 220 VKEKAHKEKELGNAAYK-----KKDFETAIQHYAKALELATDITYLNNIAAVYLE----RGKYAECIELCEKAVEVGREL 290 (539)
T ss_pred HHHhhhHHHHHHHHHHH-----hhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHh----ccHHHHhhcchHHHHHHhHHH
Confidence 11123345567776654 448889999999888775 33445677888887 7888888888888877652 1
Q ss_pred --------HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHH-
Q 005877 389 --------KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQ- 459 (672)
Q Consensus 389 --------~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~- 459 (672)
.+.-.+|..|.. .++++.|+.+|++++..... ..+.....+.+++....+..+-.+...+.
T Consensus 291 rad~klIak~~~r~g~a~~k----~~~~~~ai~~~~kaLte~Rt------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e 360 (539)
T KOG0548|consen 291 RADYKLIAKALARLGNAYTK----REDYEGAIKYYQKALTEHRT------PDLLSKLKEAEKALKEAERKAYINPEKAEE 360 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhh----HHhHHHHHHHHHHHhhhhcC------HHHHHHHHHHHHHHHHHHHHHhhChhHHHH
Confidence 122233334443 68888888888887765421 22223334455555555554444333221
Q ss_pred -HHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 005877 460 -SNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN--EHAALLIGDAYYYGRGTQRDYERAAEAYMHARS 536 (672)
Q Consensus 460 -~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~ 536 (672)
.+-|.-+.+ .+++.+|+..|.+++..++ +..+.|.+.||. ..+++..|+...+++++
T Consensus 361 ~r~kGne~Fk----------------~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~----kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 361 EREKGNEAFK----------------KGDYPEAVKHYTEAIKRDPEDARLYSNRAACYL----KLGEYPEALKDAKKCIE 420 (539)
T ss_pred HHHHHHHHHh----------------ccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH----HHhhHHHHHHHHHHHHh
Confidence 122333333 6789999999999988765 555669999999 89999999999999988
Q ss_pred c--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877 537 Q--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK 578 (672)
Q Consensus 537 ~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 578 (672)
. ....++..=|.++.. .+++++|.+.|+++++.+|...
T Consensus 421 L~p~~~kgy~RKg~al~~----mk~ydkAleay~eale~dp~~~ 460 (539)
T KOG0548|consen 421 LDPNFIKAYLRKGAALRA----MKEYDKALEAYQEALELDPSNA 460 (539)
T ss_pred cCchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCchhH
Confidence 6 567888888999887 8999999999999999998754
No 69
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.34 E-value=2.6e-10 Score=105.40 Aligned_cols=183 Identities=19% Similarity=0.113 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHH
Q 005877 242 AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSA 317 (672)
Q Consensus 242 ~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a 317 (672)
..+.+.||.-|+..+ |+..|..-+++|++. .+..++..++.+|.. .|+.+.|.+.|++|+.. ++.+.
T Consensus 35 a~arlqLal~YL~~g-----d~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~----~Ge~~~A~e~YrkAlsl~p~~GdV 105 (250)
T COG3063 35 AKARLQLALGYLQQG-----DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQK----LGENDLADESYRKALSLAPNNGDV 105 (250)
T ss_pred HHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCChhhHHHHHHHHHhcCCCccch
Confidence 467889999999994 999999999999874 688999999999999 99999999999999875 58889
Q ss_pred HHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHH
Q 005877 318 YNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAF 391 (672)
Q Consensus 318 ~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~ 391 (672)
+++.|..... +|.+++|..+|++|+.. ..++++.|+|.|-++ .|+++.|.++|+++++. ..+.+.
T Consensus 106 LNNYG~FLC~-----qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~----~gq~~~A~~~l~raL~~dp~~~~~~ 176 (250)
T COG3063 106 LNNYGAFLCA-----QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALK----AGQFDQAEEYLKRALELDPQFPPAL 176 (250)
T ss_pred hhhhhHHHHh-----CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh----cCCchhHHHHHHHHHHhCcCCChHH
Confidence 9999988875 67999999999999987 367899999999999 99999999999999885 467888
Q ss_pred HHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhH-HHHHHH-HHHhcCCHHHHHHH
Q 005877 392 YQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSS-LSRWAL-ESYLKGDVGKAFLL 446 (672)
Q Consensus 392 ~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a-~~~lg~-~~~~~g~~~~A~~~ 446 (672)
..++..+.. .+++..|..++++....++..+ -.+||. +--..||-+.+-.|
T Consensus 177 l~~a~~~~~----~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 177 LELARLHYK----AGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHHHHh----cccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHH
Confidence 889988887 8999999999999988886543 334444 23345555555444
No 70
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=7.2e-11 Score=122.31 Aligned_cols=222 Identities=15% Similarity=0.120 Sum_probs=181.0
Q ss_pred hhhHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Q 005877 215 NKGALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYA 290 (672)
Q Consensus 215 ~~~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~ 290 (672)
..|..+++.|+..+|+-.|+.++.+ ++.+++..||.+.... .+-..|+..++++++ +++-.++..||..|.
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaEN-----E~E~~ai~AL~rcl~LdP~NleaLmaLAVSyt 364 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAEN-----ENEQNAISALRRCLELDPTNLEALMALAVSYT 364 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhc-----cchHHHHHHHHHHHhcCCccHHHHHHHHHHHh
Confidence 4688889999999999999999877 5999999999999888 488999999999987 479999999999999
Q ss_pred cCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC---C-CCcCCHHHHHHHHHHHHhC----CCHHHHHHHHHHH
Q 005877 291 RGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGY---G-VEKKNYTKAKEYFEKAADN----EEAGGHYNLGVMY 362 (672)
Q Consensus 291 ~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~---g-~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y 362 (672)
+ ++.-.+|++.+.+-+....+..+......-.... + ........-.++|-.++.. .+++.+.-||.+|
T Consensus 365 N----eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 365 N----EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLY 440 (579)
T ss_pred h----hhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence 9 9999999999999877543333221110000000 0 0111233444566666553 4899999999999
Q ss_pred HcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcC
Q 005877 363 YKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKG 438 (672)
Q Consensus 363 ~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g 438 (672)
.- .+++++|+++|+.|++ +.+...|++||-.+.+ .....+|++.|.+|++..| ..+.+++|..+..+|
T Consensus 441 ~l----s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN----~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG 512 (579)
T KOG1125|consen 441 NL----SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN----GNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLG 512 (579)
T ss_pred hc----chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC----CcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhh
Confidence 98 9999999999999987 5678899999999998 5889999999999999875 578999999999999
Q ss_pred CHHHHHHHHHHHHHc
Q 005877 439 DVGKAFLLYSRMAEL 453 (672)
Q Consensus 439 ~~~~A~~~~~~a~~~ 453 (672)
.|++|..+|-.|+.+
T Consensus 513 ~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 513 AYKEAVKHLLEALSM 527 (579)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999999999876
No 71
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.30 E-value=6.1e-09 Score=111.40 Aligned_cols=382 Identities=16% Similarity=0.081 Sum_probs=263.9
Q ss_pred hhhHHHHHHHHHHHHhC--CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh----CCCHHHHHHHHHH-HhccCCHH
Q 005877 105 VRVMEEATSEVESAAME--GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE----GGNIQSKMAVAYT-YLRQDMHD 177 (672)
Q Consensus 105 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~----~~~~~a~~~Lg~~-y~~~~~~~ 177 (672)
-|+++.+.+.|+++..- +..+-++.++..|.. .+...+|+..++.... +.++..++..+.+ +.+.+..+
T Consensus 336 ~g~f~~lae~fE~~~~~~~~~~e~w~~~als~sa----ag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~e 411 (799)
T KOG4162|consen 336 CGQFEVLAEQFEQALPFSFGEHERWYQLALSYSA----AGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVE 411 (799)
T ss_pred HHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHH----hccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhh
Confidence 47888899999985443 677888889998887 6778999999998875 3455555555554 45689999
Q ss_pred HHHHHHHHHHHHHH--hhhhccCCCCcccchhcccCchhhhhHhhh-----------ccCChHHHHHHHHHHHHc--CCH
Q 005877 178 KAVKLYAELAEIAV--NSFLISKDSPVIEPIRIHNGAEENKGALRK-----------SRGEDDEAFQILEYQAQK--GNA 242 (672)
Q Consensus 178 ~A~~~y~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----------~~g~~~~Ai~~~~~aa~~--~~~ 242 (672)
+++.|-.++++... ..... ....+ -+|..|. +.-...++++.+++++.. .|+
T Consensus 412 egldYA~kai~~~~~~~~~l~-------~~~~l------~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 412 EGLDYAQKAISLLGGQRSHLK-------PRGYL------FLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred hHHHHHHHHHHHhhhhhhhhh-------hhHHH------HHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 99999999998431 11111 00011 1121111 111335788999998655 599
Q ss_pred HHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHH
Q 005877 243 GAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK---GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYN 319 (672)
Q Consensus 243 ~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~ 319 (672)
.+.+.|+.-|-.. ++.+.|.++.+++++. .++.++..|+.+... ++++..|+.....+++.--..-..
T Consensus 479 ~~if~lalq~A~~-----R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa----~kr~~~Al~vvd~al~E~~~N~~l 549 (799)
T KOG4162|consen 479 LVIFYLALQYAEQ-----RQLTSALDYAREALALNRGDSAKAWHLLALVLSA----QKRLKEALDVVDAALEEFGDNHVL 549 (799)
T ss_pred hHHHHHHHHHHHH-----HhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhh----hhhhHHHHHHHHHHHHHhhhhhhh
Confidence 9999999998776 6999999999999886 579999999999998 999999999999998641111111
Q ss_pred HHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc----CC-CchhcHHHHHHHHHHHHH--------
Q 005877 320 GIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYK----GI-GVKRDVKLACKYFLVAAN-------- 384 (672)
Q Consensus 320 ~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~----g~-g~~~~~~~A~~~~~~A~~-------- 384 (672)
.-|.+...- .-+|.++|+......+.. ..+.++-.++..-.. |. -...+..+|++.++++..
T Consensus 550 ~~~~~~i~~---~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~ 626 (799)
T KOG4162|consen 550 MDGKIHIEL---TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKS 626 (799)
T ss_pred chhhhhhhh---hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhh
Confidence 122222210 124788888776665543 112222222211111 11 123455556555555432
Q ss_pred -------------cCCH-------HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHH
Q 005877 385 -------------AGHQ-------KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGK 442 (672)
Q Consensus 385 -------------~~~~-------~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~ 442 (672)
+++. ..+.-.+..+.. .++.++|..++.++....+ +..++..|..+..+|+.++
T Consensus 627 ~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~----~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 627 AGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLL----SGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred cccccccCcccccCCCCchHHHHHHHHHHHHHHHHh----cCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHH
Confidence 1111 223345555665 7888999999999988886 4568888999999999999
Q ss_pred HHHHHHHH--HHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhCC
Q 005877 443 AFLLYSRM--AELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE--QGNEHAALLIGDAYYYGR 518 (672)
Q Consensus 443 A~~~~~~a--~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lG~~y~~g~ 518 (672)
|...|..| ++++++.....+|-++.+.|.. +......++..+++ +.++++|+.||.++.
T Consensus 703 A~~af~~Al~ldP~hv~s~~Ala~~lle~G~~--------------~la~~~~~L~dalr~dp~n~eaW~~LG~v~k--- 765 (799)
T KOG4162|consen 703 AKEAFLVALALDPDHVPSMTALAELLLELGSP--------------RLAEKRSLLSDALRLDPLNHEAWYYLGEVFK--- 765 (799)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCc--------------chHHHHHHHHHHHhhCCCCHHHHHHHHHHHH---
Confidence 99999999 5678999999999999885532 33444447776654 557999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 005877 519 GTQRDYERAAEAYMHARSQ 537 (672)
Q Consensus 519 g~~~d~~~A~~~~~~A~~~ 537 (672)
..||.++|.++|.-|++.
T Consensus 766 -~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 766 -KLGDSKQAAECFQAALQL 783 (799)
T ss_pred -HccchHHHHHHHHHHHhh
Confidence 999999999999999875
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.30 E-value=2.7e-10 Score=105.24 Aligned_cols=159 Identities=18% Similarity=0.072 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 005877 389 KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW--SSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAW 464 (672)
Q Consensus 389 ~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~ 464 (672)
.+...||.-|.. .+|+..|..-+++|++.+|. .++.-++.+|...|+.+.|.+.|++|+.. ++...++|+|+
T Consensus 36 ~arlqLal~YL~----~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~ 111 (250)
T COG3063 36 KARLQLALGYLQ----QGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhH
Confidence 455667777776 78888888888888877753 45666677777888888888888888554 57788888888
Q ss_pred HHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC----CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--C
Q 005877 465 ILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG----NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--S 538 (672)
Q Consensus 465 ~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~ 538 (672)
.|.. ++++++|..+|++|+... .++++-|+|+|-. +.++.++|.++|+++++. +
T Consensus 112 FLC~----------------qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal----~~gq~~~A~~~l~raL~~dp~ 171 (250)
T COG3063 112 FLCA----------------QGRPEEAMQQFERALADPAYGEPSDTLENLGLCAL----KAGQFDQAEEYLKRALELDPQ 171 (250)
T ss_pred HHHh----------------CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHh----hcCCchhHHHHHHHHHHhCcC
Confidence 8877 667888888888887653 4788889999999 899999999999999874 7
Q ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCC
Q 005877 539 NAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDP 575 (672)
Q Consensus 539 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 575 (672)
++.+.-.++.++.. .+|+..|..++++-....+
T Consensus 172 ~~~~~l~~a~~~~~----~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 172 FPPALLELARLHYK----AGDYAPARLYLERYQQRGG 204 (250)
T ss_pred CChHHHHHHHHHHh----cccchHHHHHHHHHHhccc
Confidence 88888999999877 8999999999999887765
No 73
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.28 E-value=1.5e-07 Score=98.91 Aligned_cols=314 Identities=14% Similarity=0.083 Sum_probs=216.2
Q ss_pred HhhhccCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCC
Q 005877 218 ALRKSRGEDDEAFQILEYQAQKG--NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGA 293 (672)
Q Consensus 218 ~~~~~~g~~~~Ai~~~~~aa~~~--~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~ 293 (672)
......|..++-..+|+++...- .+..++..+..+... +|...|...+.++.+. ++-...+.--.+-..
T Consensus 558 ~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~a-----gdv~~ar~il~~af~~~pnseeiwlaavKle~e-- 630 (913)
T KOG0495|consen 558 MFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKA-----GDVPAARVILDQAFEANPNSEEIWLAAVKLEFE-- 630 (913)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhc-----CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhc--
Confidence 33445677777788888887662 444455555555544 4888888888888774 333333333333333
Q ss_pred CCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchh
Q 005877 294 GVERNYTKALEWLTHAARQ-QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKR 370 (672)
Q Consensus 294 g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~ 370 (672)
...++.|..+|.++... |....++.-..+... +++.++|+.+++++++. +....+..+|+++.+ .+
T Consensus 631 --n~e~eraR~llakar~~sgTeRv~mKs~~~er~-----ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~----~~ 699 (913)
T KOG0495|consen 631 --NDELERARDLLAKARSISGTERVWMKSANLERY-----LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQ----ME 699 (913)
T ss_pred --cccHHHHHHHHHHHhccCCcchhhHHHhHHHHH-----hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHH----HH
Confidence 67889999999998765 344455555544443 56889999999999886 578888999999999 99
Q ss_pred cHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHH--HhcCCHHHHHHH
Q 005877 371 DVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALES--YLKGDVGKAFLL 446 (672)
Q Consensus 371 ~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~--~~~g~~~~A~~~ 446 (672)
+.+.|...|....+ ++.+..+..|+.+-+. .++..+|...++++.-.+|.++.+++..+- .+.|+.++|...
T Consensus 700 ~ie~aR~aY~~G~k~cP~~ipLWllLakleEk----~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 700 NIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK----DGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHhccccCCCCchHHHHHHHHHHH----hcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 99999999988877 4677888888888887 778999999999999888888877777664 467899999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHH
Q 005877 447 YSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYER 526 (672)
Q Consensus 447 ~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~ 526 (672)
..+|++.=...+......+... ...++-.+++..+++ -.+|+..+..+|.+++ ..+.+++
T Consensus 776 makALQecp~sg~LWaEaI~le--------------~~~~rkTks~DALkk--ce~dphVllaia~lfw----~e~k~~k 835 (913)
T KOG0495|consen 776 MAKALQECPSSGLLWAEAIWLE--------------PRPQRKTKSIDALKK--CEHDPHVLLAIAKLFW----SEKKIEK 835 (913)
T ss_pred HHHHHHhCCccchhHHHHHHhc--------------cCcccchHHHHHHHh--ccCCchhHHHHHHHHH----HHHHHHH
Confidence 9998876433332222222111 001222233333332 2467888889999999 8899999
Q ss_pred HHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877 527 AAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA 577 (672)
Q Consensus 527 A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 577 (672)
|.+||.+|++. ++.+++-.+=..+.. -|.-+.-.+.+++.....|..
T Consensus 836 ar~Wf~Ravk~d~d~GD~wa~fykfel~----hG~eed~kev~~~c~~~EP~h 884 (913)
T KOG0495|consen 836 AREWFERAVKKDPDNGDAWAWFYKFELR----HGTEEDQKEVLKKCETAEPTH 884 (913)
T ss_pred HHHHHHHHHccCCccchHHHHHHHHHHH----hCCHHHHHHHHHHHhccCCCC
Confidence 99999999874 455554433333322 355666677888887777764
No 74
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.27 E-value=1.3e-08 Score=98.45 Aligned_cols=216 Identities=16% Similarity=0.109 Sum_probs=165.2
Q ss_pred hHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCC------HHHHHHHHHH
Q 005877 217 GALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE------PQSMEFLGEI 288 (672)
Q Consensus 217 ~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~ 288 (672)
|.-+.-..+.++|++.|...++. ...++.+.||.+|-.- +..++||...+..++..+ ..+...||.=
T Consensus 42 GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsR-----GEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 42 GLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSR-----GEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhc-----chHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 33344556788899999888765 3678889999998776 488999998888777532 4677888888
Q ss_pred HHcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCC-------HHHHHHHH
Q 005877 289 YARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE-------AGGHYNLG 359 (672)
Q Consensus 289 y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~-------~~a~~~Lg 359 (672)
|.. .|-++.|...|...++.+ -..|+-.|-.+|.. + .++++|++.-++.+..+. +.-+..|+
T Consensus 117 ym~----aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~----t-reW~KAId~A~~L~k~~~q~~~~eIAqfyCELA 187 (389)
T COG2956 117 YMA----AGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQA----T-REWEKAIDVAERLVKLGGQTYRVEIAQFYCELA 187 (389)
T ss_pred HHH----hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHH----h-hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Confidence 888 888899999998888755 34577888888875 3 488999998888877642 34445666
Q ss_pred HHHHcCCCchhcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC---hhHHHHHHHHH
Q 005877 360 VMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP---WSSLSRWALES 434 (672)
Q Consensus 360 ~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~~ 434 (672)
..+.. ..|.++|+.++++|++-+ ...+-..+|.++.. +|++.+|++.++.+++.++ +...-.|-.+|
T Consensus 188 q~~~~----~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~----~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y 259 (389)
T COG2956 188 QQALA----SSDVDRARELLKKALQADKKCVRASIILGRVELA----KGDYQKAVEALERVLEQNPEYLSEVLEMLYECY 259 (389)
T ss_pred HHHhh----hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh----ccchHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 66666 778888888888887744 56777788888886 8888888888888888876 34566777778
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 005877 435 YLKGDVGKAFLLYSRMAELG 454 (672)
Q Consensus 435 ~~~g~~~~A~~~~~~a~~~g 454 (672)
...|+.++...++.++.+..
T Consensus 260 ~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 260 AQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHhCCHHHHHHHHHHHHHcc
Confidence 88888888888888887654
No 75
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=3.4e-07 Score=91.41 Aligned_cols=381 Identities=13% Similarity=0.075 Sum_probs=234.9
Q ss_pred CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCC
Q 005877 122 GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE-GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDS 200 (672)
Q Consensus 122 ~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~-~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~ 200 (672)
++..-.+..+.+|.. .++.++|+........ ...+..-+.++..+...++..++.--|.+++..-|-....
T Consensus 95 ~~~e~~r~~aecy~~----~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~---- 166 (564)
T KOG1174|consen 95 GDAEQRRRAAECYRQ----IGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQV---- 166 (564)
T ss_pred ccHHHHHHHHHHHHH----HccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHH----
Confidence 445555666666666 5566666655554433 3556667778888887777777777777766543211000
Q ss_pred CcccchhcccCchhhhhHhhhccCChHHHHHHHHHH--------HHcC-CHHHH--HHHHHHHHhcCCCcccCHHHHHHH
Q 005877 201 PVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQ--------AQKG-NAGAM--YKIGLFYYFGLRGLRRDRTKALMW 269 (672)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~a--------a~~~-~~~a~--~~Lg~~y~~~~~~~~~~~~~A~~~ 269 (672)
-.+.+ +..+.-++.. ..+. +-... ..++.++. .+...|...
T Consensus 167 --------------i~~ll-------~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~-------~~hs~a~~t 218 (564)
T KOG1174|consen 167 --------------IEALL-------ELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFN-------FKHSDASQT 218 (564)
T ss_pred --------------HHHHH-------HHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHh-------cccchhhhH
Confidence 00000 0000000000 0001 11111 11222221 133334333
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHH--HHH
Q 005877 270 FSKAAD----KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTK--AKE 341 (672)
Q Consensus 270 ~~~a~~----~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~--A~~ 341 (672)
+--+-+ .++...+..+|.++.. .||+.+|+--|+++.-. ....++-..|++... .|+++. ++-
T Consensus 219 ~l~le~~~~lr~NvhLl~~lak~~~~----~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~-----eg~~e~~~~L~ 289 (564)
T KOG1174|consen 219 FLMLHDNTTLRCNEHLMMALGKCLYY----NGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQ-----EGGCEQDSALM 289 (564)
T ss_pred HHHHHhhccCCccHHHHHHHhhhhhh----hcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHh-----ccCHhhHHHHH
Confidence 332222 3667777777888777 77888888888776543 355566666666553 234433 333
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHH
Q 005877 342 YFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVA 419 (672)
Q Consensus 342 ~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~ 419 (672)
.+--++......-++--|..... .+++..|+.+-+|+++.+ +.+++..-|.++.. .+..++|+-.|+.|.
T Consensus 290 ~~Lf~~~~~ta~~wfV~~~~l~~----~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~----~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 290 DYLFAKVKYTASHWFVHAQLLYD----EKKFERALNFVEKCIDSEPRNHEALILKGRLLIA----LERHTQAVIAFRTAQ 361 (564)
T ss_pred HHHHhhhhcchhhhhhhhhhhhh----hhhHHHHHHHHHHHhccCcccchHHHhccHHHHh----ccchHHHHHHHHHHH
Confidence 33333333344444444555555 678888888888887754 66777777777776 788888888888887
Q ss_pred HcCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHH-HHHHHhCCCCcccCCCCCCCchHhHHHHHHH
Q 005877 420 ERGPW--SSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAA-WILDKYGEGSMCMGESGFCTDAERHQCAHSL 494 (672)
Q Consensus 420 ~~~~~--~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla-~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 494 (672)
...|- ..+-.|-..|...|.+.+|...-..+... .+..++.-+| .+ ...+..--++|.++
T Consensus 362 ~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V---------------~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 362 MLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLV---------------LFPDPRMREKAKKF 426 (564)
T ss_pred hcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhccee---------------eccCchhHHHHHHH
Confidence 77653 45666666777888888887777666443 2333333222 11 12234456899999
Q ss_pred HHHHHhC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 005877 495 WWQASEQ--GNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ-SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQAL 571 (672)
Q Consensus 495 ~~~a~~~--~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 571 (672)
++++..+ +...|.+.++.++. .++.+..++..+++++.. .+..-+..||.++.. ...+++|.++|.+|+
T Consensus 427 ~ek~L~~~P~Y~~AV~~~AEL~~----~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A----~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 427 AEKSLKINPIYTPAVNLIAELCQ----VEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRA----QNEPQKAMEYYYKAL 498 (564)
T ss_pred HHhhhccCCccHHHHHHHHHHHH----hhCccchHHHHHHHHHhhccccHHHHHHHHHHHH----hhhHHHHHHHHHHHH
Confidence 9987654 56888999999999 899999999999999875 667778899999876 788999999999999
Q ss_pred hcCCCCc
Q 005877 572 EVDPAAK 578 (672)
Q Consensus 572 ~~~~~~~ 578 (672)
.++|.+.
T Consensus 499 r~dP~~~ 505 (564)
T KOG1174|consen 499 RQDPKSK 505 (564)
T ss_pred hcCccch
Confidence 9999875
No 76
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.22 E-value=2.4e-08 Score=97.17 Aligned_cols=319 Identities=16% Similarity=0.114 Sum_probs=178.3
Q ss_pred CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCC
Q 005877 122 GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKD 199 (672)
Q Consensus 122 ~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~ 199 (672)
.+..-++.||.-+.. .+.+..|+..|..|++ +++-.+.+.-|.+|+..|.-.-|+.-+.+++++.|.-.
T Consensus 36 advekhlElGk~lla----~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~----- 106 (504)
T KOG0624|consen 36 ADVEKHLELGKELLA----RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFM----- 106 (504)
T ss_pred HHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHH-----
Confidence 345567788887776 7788899999998887 46778888889999998888888888888887543211
Q ss_pred CCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHH
Q 005877 200 SPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG-----NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAA 274 (672)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~-----~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~ 274 (672)
.+..+.|.+.+++|.++.|+.-|++..+.. ..+++-.|+.+-... ..
T Consensus 107 -----------~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~------------~l----- 158 (504)
T KOG0624|consen 107 -----------AARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHW------------VL----- 158 (504)
T ss_pred -----------HHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHH------------HH-----
Confidence 222245555556666666655555544332 122222222211100 00
Q ss_pred HcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--C
Q 005877 275 DKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--E 350 (672)
Q Consensus 275 ~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~ 350 (672)
.....-+.. .||...|+.+....++.. ++..+..-+.+|.. .+++.+|+.-++.+.+. +
T Consensus 159 --------~~ql~s~~~----~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~-----~~e~k~AI~Dlk~askLs~D 221 (504)
T KOG0624|consen 159 --------VQQLKSASG----SGDCQNAIEMITHLLEIQPWDASLRQARAKCYIA-----EGEPKKAIHDLKQASKLSQD 221 (504)
T ss_pred --------HHHHHHHhc----CCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHh-----cCcHHHHHHHHHHHHhcccc
Confidence 000001111 456666666666666654 22233334455543 34666666666666443 4
Q ss_pred CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHH--HHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHH
Q 005877 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQK--AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLS 428 (672)
Q Consensus 351 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~--a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~ 428 (672)
+.+.+|.+..++.. .+|.+.++...+..++.++.. .+- .|.. .+...+.++-.+++++
T Consensus 222 nTe~~ykis~L~Y~----vgd~~~sL~~iRECLKldpdHK~Cf~----~YKk----lkKv~K~les~e~~ie-------- 281 (504)
T KOG0624|consen 222 NTEGHYKISQLLYT----VGDAENSLKEIRECLKLDPDHKLCFP----FYKK----LKKVVKSLESAEQAIE-------- 281 (504)
T ss_pred chHHHHHHHHHHHh----hhhHHHHHHHHHHHHccCcchhhHHH----HHHH----HHHHHHHHHHHHHHHh--------
Confidence 66666666666666 666666666655555543221 110 1111 2223333333333333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhC--CCH
Q 005877 429 RWALESYLKGDVGKAFLLYSRMAELGYEVAQSNA--AWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ--GNE 504 (672)
Q Consensus 429 ~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nl--a~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~ 504 (672)
.+++.++++-.++.++.........+ =.++ .......+++-+|+.--...++- +++
T Consensus 282 --------~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~------------c~C~~~d~~~~eAiqqC~evL~~d~~dv 341 (504)
T KOG0624|consen 282 --------EKHWTECLEAGEKVLKNEPEETMIRYNGFRVL------------CTCYREDEQFGEAIQQCKEVLDIDPDDV 341 (504)
T ss_pred --------hhhHHHHHHHHHHHHhcCCcccceeeeeehee------------eecccccCCHHHHHHHHHHHHhcCchHH
Confidence 45566666666666665544332111 0010 11122256778888877766544 456
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 005877 505 HAALLIGDAYYYGRGTQRDYERAAEAYMHARSQS 538 (672)
Q Consensus 505 ~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~ 538 (672)
+++..-+..|. ...+|+.|++-|++|.+.+
T Consensus 342 ~~l~dRAeA~l----~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 342 QVLCDRAEAYL----GDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHh----hhHHHHHHHHHHHHHHhcC
Confidence 67778888888 7788888888888887753
No 77
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.22 E-value=7.2e-08 Score=93.90 Aligned_cols=314 Identities=12% Similarity=0.064 Sum_probs=186.5
Q ss_pred cCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhC--CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCH
Q 005877 85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESAAME--GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNI 160 (672)
Q Consensus 85 ~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~ 160 (672)
..-.+.+|...+. .+.+..|+..|..+++. .+..+.|.-|..|.. .+.-.-|+.-+.+.++ ++..
T Consensus 38 vekhlElGk~lla-------~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLA----mGksk~al~Dl~rVlelKpDF~ 106 (504)
T KOG0624|consen 38 VEKHLELGKELLA-------RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLA----MGKSKAALQDLSRVLELKPDFM 106 (504)
T ss_pred HHHHHHHHHHHHH-------hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh----hcCCccchhhHHHHHhcCccHH
Confidence 4457788888775 58899999999998764 678899999999998 7778888888888876 6788
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccC--chhhhhHhhhccCChHHHHHHHHHHHH
Q 005877 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNG--AEENKGALRKSRGEDDEAFQILEYQAQ 238 (672)
Q Consensus 161 ~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~g~~~~Ai~~~~~aa~ 238 (672)
.|...-|.+++.+|.++.|..-|+.+++..++.-... ...+.+.+..+ .......-+...|+...||.+.....+
T Consensus 107 ~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~---eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 107 AARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVL---EAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred HHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhH---HHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 9999999999999999999999999988554321100 00000000000 001112223344555555555555544
Q ss_pred cC--CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-
Q 005877 239 KG--NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ- 313 (672)
Q Consensus 239 ~~--~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~- 313 (672)
.. ++..+-..+.+|... +++.+||.-++.+.+. ++.++++.+..++.. .+|.+.++...+..++.+
T Consensus 184 i~~Wda~l~~~Rakc~i~~-----~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~----vgd~~~sL~~iRECLKldp 254 (504)
T KOG0624|consen 184 IQPWDASLRQARAKCYIAE-----GEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT----VGDAENSLKEIRECLKLDP 254 (504)
T ss_pred cCcchhHHHHHHHHHHHhc-----CcHHHHHHHHHHHHhccccchHHHHHHHHHHHh----hhhHHHHHHHHHHHHccCc
Confidence 42 444444555555544 2555555555555442 445555555555555 555555555555554432
Q ss_pred -CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHH---
Q 005877 314 -LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQK--- 389 (672)
Q Consensus 314 -~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~--- 389 (672)
+-.++- .|-. .....+.++-.++++ . .+++.++++-.++.++..+..
T Consensus 255 dHK~Cf~----~YKk-----lkKv~K~les~e~~i----------------e----~~~~t~cle~ge~vlk~ep~~~~i 305 (504)
T KOG0624|consen 255 DHKLCFP----FYKK-----LKKVVKSLESAEQAI----------------E----EKHWTECLEAGEKVLKNEPEETMI 305 (504)
T ss_pred chhhHHH----HHHH-----HHHHHHHHHHHHHHH----------------h----hhhHHHHHHHHHHHHhcCCcccce
Confidence 111100 0000 001122222222221 1 345666666666666554432
Q ss_pred ---HHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877 390 ---AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (672)
Q Consensus 390 ---a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g 454 (672)
....+..|+.. .+++.+|+.-+.++++..+ .+++...+.+|.....|+.|+.-|++|.+.+
T Consensus 306 r~~~~r~~c~C~~~----d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 306 RYNGFRVLCTCYRE----DEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred eeeeeheeeecccc----cCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 22233445554 7778888888888887774 4566777777777778888888888887664
No 78
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.20 E-value=5.3e-08 Score=106.64 Aligned_cols=440 Identities=14% Similarity=0.018 Sum_probs=288.9
Q ss_pred CCCCcccccCC--CCCCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhC--CChHHHHHHHHHhhcCCcccCCH
Q 005877 69 PGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAME--GDPHARSVLGFLYGMGMMRERNK 144 (672)
Q Consensus 69 ~~~a~~~~~~~--~~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~G~g~~~d~ 144 (672)
...+...|-++ .++.-+.+.-.+|..+-- .-|...|.+.|.+|.+. ++..+.-.++..|.. ..+.
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd-------~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae----~~~w 542 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRD-------SDDMKRAKKCFDKAFELDATDAEAAAASADTYAE----ESTW 542 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhc----cccH
Confidence 33444444444 345455555566665442 34889999999997655 778888899999998 8899
Q ss_pred HHHHHHHHHHHhCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhh
Q 005877 145 GKAFLYHHFAAEGGN----IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALR 220 (672)
Q Consensus 145 ~~A~~~~~~A~~~~~----~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 220 (672)
+.|......+.+... ......+|..|...++.-+|+..++-++..+|+++ ..+..+|..|
T Consensus 543 e~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~----------------n~W~gLGeAY 606 (1238)
T KOG1127|consen 543 EEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDY----------------NLWLGLGEAY 606 (1238)
T ss_pred HHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhH----------------HHHHHHHHHH
Confidence 999988777665432 24445589999999999999999999998877765 3355689999
Q ss_pred hccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc---------CCHHHHHHHHHHH
Q 005877 221 KSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK---------GEPQSMEFLGEIY 289 (672)
Q Consensus 221 ~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~---------~~~~a~~~Lg~~y 289 (672)
...|.+.-|++.|.++... .+.-+.+..+.+--.. +.+.+|+..+...+.. |-++.+.+++..+
T Consensus 607 ~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~-----GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~ 681 (1238)
T KOG1127|consen 607 PESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN-----GKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDS 681 (1238)
T ss_pred HhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9999999999999988655 4777788888887766 4999999988887652 4556666666655
Q ss_pred HcCCCCcCCHHHHHHHHHHHHHc-------C---CHHHHH--------------------HHHHHH--HcCCCCCcCCH-
Q 005877 290 ARGAGVERNYTKALEWLTHAARQ-------Q---LYSAYN--------------------GIGYLY--VKGYGVEKKNY- 336 (672)
Q Consensus 290 ~~g~g~~~~~~~A~~~~~~a~~~-------~---~~~a~~--------------------~Lg~~y--~~g~g~~~~~~- 336 (672)
.- .+-+.+|..+++++++. . +.-.+. .++.+. ..+.++.+.+-
T Consensus 682 ~~----~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~ 757 (1238)
T KOG1127|consen 682 AI----TGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDL 757 (1238)
T ss_pred HH----HHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhH
Confidence 54 55566666666666542 1 111111 111111 12223323222
Q ss_pred -HHHHHHHHHHHhC-CCHHHHHHHHHHHHc-----CCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCC
Q 005877 337 -TKAKEYFEKAADN-EEAGGHYNLGVMYYK-----GIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKN 407 (672)
Q Consensus 337 -~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~-----g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~ 407 (672)
--+.+++-..+.. .++..++|||.-|.. |. +..+...|+.+++++++. ++...+..||.+ . ..++
T Consensus 758 l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~e-t~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl--s---g~gn 831 (1238)
T KOG1127|consen 758 LFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGE-TMKDACTAIRCCKKAVSLCANNEGLWNALGVL--S---GIGN 831 (1238)
T ss_pred HHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCC-cchhHHHHHHHHHHHHHHhhccHHHHHHHHHh--h---ccch
Confidence 3455555555443 468889999987765 22 244557999999999874 577788888877 3 2689
Q ss_pred HHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcccCCCCCCC
Q 005877 408 LHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCT 483 (672)
Q Consensus 408 ~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g--~~~a~~nla~~l~~~~~~~~~~~~~~~~~ 483 (672)
+.-|..+|-++....| ...++++|..+.+..|++.|-..+.++.... +..++.--|.+...
T Consensus 832 va~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~ea--------------- 896 (1238)
T KOG1127|consen 832 VACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEA--------------- 896 (1238)
T ss_pred hhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHH---------------
Confidence 9999999999877765 4568899999999999999999999885554 44444444444444
Q ss_pred chHhHHHHHHHHHHHH--hCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH------Hh------cCCHHHHHHH
Q 005877 484 DAERHQCAHSLWWQAS--EQG---NEHAALLIGDAYYYGRGTQRDYERAAEAYMHA------RS------QSNAQAMFNL 546 (672)
Q Consensus 484 ~~~~~~~A~~~~~~a~--~~~---~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A------~~------~~~~~a~~~L 546 (672)
.++..++..++..+- ..+ -+...|.+......- ..||++.-+..-++. ++ ++...|+.-.
T Consensus 897 -vG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~--~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~ 973 (1238)
T KOG1127|consen 897 -VGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHL--QNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAAN 973 (1238)
T ss_pred -HHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHH--hccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHH
Confidence 556666666666521 111 133333333222211 455555555544442 11 2345667777
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHh
Q 005877 547 GYMHEHGQGLPLDLHLAKRYYDQALE 572 (672)
Q Consensus 547 g~~y~~g~g~~~d~~~A~~~~~~A~~ 572 (672)
|...++ .+.+..|.+.+.+.+.
T Consensus 974 gstlEh----L~ey~~a~ela~Rlig 995 (1238)
T KOG1127|consen 974 GSTLEH----LEEYRAALELATRLIG 995 (1238)
T ss_pred HhHHHH----HHHHHHHHHHHHHHHH
Confidence 777776 6666666666665543
No 79
>PLN02789 farnesyltranstransferase
Probab=99.18 E-value=1.7e-08 Score=103.01 Aligned_cols=244 Identities=9% Similarity=0.031 Sum_probs=170.1
Q ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchh-cH
Q 005877 296 ERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKR-DV 372 (672)
Q Consensus 296 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~-~~ 372 (672)
.+++.+|+.+|+..+.. .+..++|+..+.++++. ++..++...|.++.. .+ ++
T Consensus 33 ~~~~~~a~~~~ra~l~~--------------------~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~----L~~~l 88 (320)
T PLN02789 33 TPEFREAMDYFRAVYAS--------------------DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEA----LDADL 88 (320)
T ss_pred CHHHHHHHHHHHHHHHc--------------------CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHH----cchhH
Confidence 35666666666665543 23567777787777765 366777777777766 44 57
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCC--HHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHH
Q 005877 373 KLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKN--LHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLL 446 (672)
Q Consensus 373 ~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~--~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~ 446 (672)
++++.++.++++. .+..++++.+.++.. .++ .++++.+++++++.++ ..++...+.++...|++++++.+
T Consensus 89 ~eeL~~~~~~i~~npknyqaW~~R~~~l~~----l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~ 164 (320)
T PLN02789 89 EEELDFAEDVAEDNPKNYQIWHHRRWLAEK----LGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEY 164 (320)
T ss_pred HHHHHHHHHHHHHCCcchHHhHHHHHHHHH----cCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHH
Confidence 8888888888764 456677777777654 333 3678888888888774 55778888888888889999999
Q ss_pred HHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhCCCCCC
Q 005877 447 YSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS--EQGNEHAALLIGDAYYYGRGTQR 522 (672)
Q Consensus 447 ~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lG~~y~~g~g~~~ 522 (672)
+.++++. .+..|+++.++++.+.+. + .+. ....++++.+..+++ .+.+..+++.++.++........
T Consensus 165 ~~~~I~~d~~N~sAW~~R~~vl~~~~~----l--~~~---~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~ 235 (320)
T PLN02789 165 CHQLLEEDVRNNSAWNQRYFVITRSPL----L--GGL---EAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALV 235 (320)
T ss_pred HHHHHHHCCCchhHHHHHHHHHHhccc----c--ccc---cccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccc
Confidence 9998775 488888888888766321 0 000 123456788887775 56789999999999985211235
Q ss_pred CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCC--------------CHHHHHHHHHHHHhcCCC
Q 005877 523 DYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPL--------------DLHLAKRYYDQALEVDPA 576 (672)
Q Consensus 523 d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~--------------d~~~A~~~~~~A~~~~~~ 576 (672)
...+|+....++... .++.|+..|+.+|..|....+ +.++|.+.++...+.+|.
T Consensus 236 ~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~i 305 (320)
T PLN02789 236 SDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPM 305 (320)
T ss_pred cchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcH
Confidence 566788888887663 688999999999987643221 456777777766444443
No 80
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.13 E-value=1.8e-07 Score=98.58 Aligned_cols=305 Identities=11% Similarity=0.064 Sum_probs=190.5
Q ss_pred hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhh
Q 005877 120 MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG-----GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSF 194 (672)
Q Consensus 120 ~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~-----~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~ 194 (672)
+|+.+.++..+|.+|.. .++.+.|...+.++... +..+.....+.++...|++++|+..++++++..|.+.
T Consensus 2 dp~~~~a~~~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~ 77 (355)
T cd05804 2 DPDFALGHAAAALLLLL----GGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL 77 (355)
T ss_pred CCccHHHHHHHHHHHHh----cCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 56778888888888877 66777777777776542 3345666778888888888888888888887654322
Q ss_pred hccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHH
Q 005877 195 LISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQA--QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSK 272 (672)
Q Consensus 195 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa--~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~ 272 (672)
.. ... ...........+..+.+.+.++... .++...+...+|.++... +++++|+..+++
T Consensus 78 ~a---------~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~-----G~~~~A~~~~~~ 139 (355)
T cd05804 78 LA---------LKL----HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEA-----GQYDRAEEAARR 139 (355)
T ss_pred HH---------HHH----hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHc-----CCHHHHHHHHHH
Confidence 00 000 0001111112344444444444311 123556777788888877 499999999999
Q ss_pred HHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC----C--HHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Q 005877 273 AADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ----L--YSAYNGIGYLYVKGYGVEKKNYTKAKEYFE 344 (672)
Q Consensus 273 a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~--~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~ 344 (672)
+++. .++.++..+|.+|.. .+++++|+.+++++++.. . ...+..++.++.. .|++++|+.+|+
T Consensus 140 al~~~p~~~~~~~~la~i~~~----~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~-----~G~~~~A~~~~~ 210 (355)
T cd05804 140 ALELNPDDAWAVHAVAHVLEM----QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE-----RGDYEAALAIYD 210 (355)
T ss_pred HHhhCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH-----CCCHHHHHHHHH
Confidence 9874 678889999999998 899999999999998752 1 1235578888885 679999999999
Q ss_pred HHHhCCC-HHHHH---HH----HHHHHcC-CCchhcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCCccCCHHHHHH
Q 005877 345 KAADNEE-AGGHY---NL----GVMYYKG-IGVKRDVKLACKYFLVAANAGH--QKAFYQLAKMFHTGVGLKKNLHMATA 413 (672)
Q Consensus 345 ~a~~~~~-~~a~~---~L----g~~y~~g-~g~~~~~~~A~~~~~~A~~~~~--~~a~~~L~~~y~~g~g~~~~~~~A~~ 413 (672)
++..... +.... .. -.....| .....+.+.......... .++ .......+.++.. .++.++|..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~----~~~~~~a~~ 285 (355)
T cd05804 211 THIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHF-PDHGLAFNDLHAALALAG----AGDKDALDK 285 (355)
T ss_pred HHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhc-CcccchHHHHHHHHHHhc----CCCHHHHHH
Confidence 9864432 11111 21 1122222 112222322222221110 111 1111234444444 778999999
Q ss_pred HHHHHHHcCC-----------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCHHHHH
Q 005877 414 LYKLVAERGP-----------WSSLSRWALESYLKGDVGKAFLLYSRMAEL----GYEVAQS 460 (672)
Q Consensus 414 ~~~~a~~~~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~----g~~~a~~ 460 (672)
.++....... .......+..++..|++++|+..+..++.. |-..+|.
T Consensus 286 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~aq~ 347 (355)
T cd05804 286 LLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSHAQR 347 (355)
T ss_pred HHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 8887644221 223556788899999999999999999654 4444543
No 81
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.12 E-value=1.7e-06 Score=91.16 Aligned_cols=396 Identities=13% Similarity=0.035 Sum_probs=268.3
Q ss_pred CHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhh-hhc------------cCCCCcccc--
Q 005877 143 NKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNS-FLI------------SKDSPVIEP-- 205 (672)
Q Consensus 143 d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~-~~~------------~~~~~~~~~-- 205 (672)
-|+.|...+.+|-+ +.++.....-+.+-...|+.+.-.+...+.+..-..+ ... ...+..+..
T Consensus 421 tYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQA 500 (913)
T KOG0495|consen 421 TYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQA 500 (913)
T ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHH
Confidence 45666666666655 4566666666666666677666665555544322110 000 001111110
Q ss_pred -----hhc------ccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHH
Q 005877 206 -----IRI------HNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAA 274 (672)
Q Consensus 206 -----~~l------~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~ 274 (672)
+.+ ...+..+-+....+.+..+-|...|..+..--...-.+.+.-.++.. ..+..+.-..+|++++
T Consensus 501 Ii~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek---~hgt~Esl~Allqkav 577 (913)
T KOG0495|consen 501 IIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEK---SHGTRESLEALLQKAV 577 (913)
T ss_pred HHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHH---hcCcHHHHHHHHHHHH
Confidence 011 01223345556677788888888888877664333233333333322 1246777788899998
Q ss_pred Hc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-CCC
Q 005877 275 DK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAAD-NEE 351 (672)
Q Consensus 275 ~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~-~~~ 351 (672)
.. .....+.+.+.-+.. .||...|...+.++++.+.-.--..|+.+-+.+ +...++.|..+|.++-. .+.
T Consensus 578 ~~~pkae~lwlM~ake~w~----agdv~~ar~il~~af~~~pnseeiwlaavKle~---en~e~eraR~llakar~~sgT 650 (913)
T KOG0495|consen 578 EQCPKAEILWLMYAKEKWK----AGDVPAARVILDQAFEANPNSEEIWLAAVKLEF---ENDELERARDLLAKARSISGT 650 (913)
T ss_pred HhCCcchhHHHHHHHHHHh----cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhh---ccccHHHHHHHHHHHhccCCc
Confidence 85 344455555666666 799999999999999864223333444444432 23488999999999955 467
Q ss_pred HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChh--HH
Q 005877 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS--SL 427 (672)
Q Consensus 352 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~--a~ 427 (672)
...++.-+.+-.- .++.++|+.+++.+++.- ....+..+|.+++. .++.+.|...|-...+..|-. .+
T Consensus 651 eRv~mKs~~~er~----ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~----~~~ie~aR~aY~~G~k~cP~~ipLW 722 (913)
T KOG0495|consen 651 ERVWMKSANLERY----LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQ----MENIEMAREAYLQGTKKCPNSIPLW 722 (913)
T ss_pred chhhHHHhHHHHH----hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHH----HHHHHHHHHHHHhccccCCCCchHH
Confidence 8888888777766 789999999999999854 56788899999998 999999999999998888654 45
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHH
Q 005877 428 SRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAA 507 (672)
Q Consensus 428 ~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~ 507 (672)
..++..-...|+..+|...++++.-.+...+...|+.+-..++ .++.+.|..+..+|++.-+....
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR--------------~gn~~~a~~lmakALQecp~sg~ 788 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELR--------------AGNKEQAELLMAKALQECPSSGL 788 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHH--------------cCCHHHHHHHHHHHHHhCCccch
Confidence 5566667778899999999999976666666666665544422 55788899999999988887777
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877 508 LLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK 578 (672)
Q Consensus 508 ~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 578 (672)
..--.+...+.+ +.-.+++..+++. .++|-.+...|.++.. .+.+++|++||.+|+..+|+..
T Consensus 789 LWaEaI~le~~~--~rkTks~DALkkc--e~dphVllaia~lfw~----e~k~~kar~Wf~Ravk~d~d~G 851 (913)
T KOG0495|consen 789 LWAEAIWLEPRP--QRKTKSIDALKKC--EHDPHVLLAIAKLFWS----EKKIEKAREWFERAVKKDPDNG 851 (913)
T ss_pred hHHHHHHhccCc--ccchHHHHHHHhc--cCCchhHHHHHHHHHH----HHHHHHHHHHHHHHHccCCccc
Confidence 777777776643 3444444444443 3678888888988765 7899999999999999999854
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.10 E-value=2.9e-07 Score=97.11 Aligned_cols=302 Identities=12% Similarity=-0.050 Sum_probs=197.2
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 005877 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-----GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ 312 (672)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 312 (672)
+++.+.++..+|.++... ++++.+...+.++.+. +..+..+..+.++.. .+++++|...++++++.
T Consensus 2 dp~~~~a~~~~a~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~----~g~~~~A~~~~~~~l~~ 72 (355)
T cd05804 2 DPDFALGHAAAALLLLLG-----GERPAAAAKAAAAAQALAARATERERAHVEALSAWI----AGDLPKALALLEQLLDD 72 (355)
T ss_pred CCccHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 567888999999888776 3777777777776653 345567777888887 89999999999999875
Q ss_pred C--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--
Q 005877 313 Q--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG-- 386 (672)
Q Consensus 313 ~--~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-- 386 (672)
. +..+... +..+.. .+...+....+...+...... +...+...+|.++.. .|++++|...++++++..
T Consensus 73 ~P~~~~a~~~-~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~----~G~~~~A~~~~~~al~~~p~ 146 (355)
T cd05804 73 YPRDLLALKL-HLGAFG-LGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEE----AGQYDRAEEAARRALELNPD 146 (355)
T ss_pred CCCcHHHHHH-hHHHHH-hcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC
Confidence 3 4444443 333321 111122444455544442222 345566788889998 899999999999998854
Q ss_pred CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hh----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----H
Q 005877 387 HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WS----SLSRWALESYLKGDVGKAFLLYSRMAELGY----E 456 (672)
Q Consensus 387 ~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~----a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~----~ 456 (672)
++.+...+|.++.. .+++++|+.+++++++..+ +. .+..++..+...|++++|+..|+++..... .
T Consensus 147 ~~~~~~~la~i~~~----~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~ 222 (355)
T cd05804 147 DAWAVHAVAHVLEM----QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPA 222 (355)
T ss_pred CcHHHHHHHHHHHH----cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChH
Confidence 66788999999987 8999999999999998753 22 345789999999999999999999864432 1
Q ss_pred HHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 005877 457 VAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN--EHAALLIGDAYYYGRGTQRDYERAAEAYMHA 534 (672)
Q Consensus 457 ~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A 534 (672)
....+.+..+..+.. .+......+++.......... ++. .......+.++. ..++.++|...++..
T Consensus 223 ~~~~~~~~~l~~~~~-------~g~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~a~~~~----~~~~~~~a~~~L~~l 290 (355)
T cd05804 223 LDLLDAASLLWRLEL-------AGHVDVGDRWEDLADYAAWHF-PDHGLAFNDLHAALALA----GAGDKDALDKLLAAL 290 (355)
T ss_pred HHHhhHHHHHHHHHh-------cCCCChHHHHHHHHHHHHhhc-CcccchHHHHHHHHHHh----cCCCHHHHHHHHHHH
Confidence 112133233322111 111111233333333322111 111 122235566665 678899999988775
Q ss_pred Hhc-------C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcC
Q 005877 535 RSQ-------S----NAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVD 574 (672)
Q Consensus 535 ~~~-------~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 574 (672)
... + ......-.++.+.. .||.+.|++.+..|+...
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~l~A~~~~~----~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 291 KGRASSADDNKQPARDVGLPLAEALYAFA----EGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHhccCchhhhHHhhhHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Confidence 431 1 13344555666555 789999999999998754
No 83
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.08 E-value=1.9e-08 Score=99.47 Aligned_cols=176 Identities=15% Similarity=0.096 Sum_probs=119.5
Q ss_pred CcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh--CCCh---HHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--
Q 005877 84 AINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAM--EGDP---HARSVLGFLYGMGMMRERNKGKAFLYHHFAAE-- 156 (672)
Q Consensus 84 ~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~--~~~~---~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~-- 156 (672)
.+..++.+|..++. .+++++|+..|++... ++++ .+++.+|.+|.. .+++++|+..|+++++
T Consensus 32 ~~~~~~~~g~~~~~-------~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~----~~~~~~A~~~~~~~l~~~ 100 (235)
T TIGR03302 32 PAEELYEEAKEALD-------SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK----SGDYAEAIAAADRFIRLH 100 (235)
T ss_pred CHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHC
Confidence 35678888888775 5899999999999544 4554 688999999999 9999999999999987
Q ss_pred CCCHH---HHHHHHHHHhcc--------CCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCC
Q 005877 157 GGNIQ---SKMAVAYTYLRQ--------DMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGE 225 (672)
Q Consensus 157 ~~~~~---a~~~Lg~~y~~~--------~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~ 225 (672)
++++. +++.+|.++... +++++|++.|+++++..|....
T Consensus 101 p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~------------------------------ 150 (235)
T TIGR03302 101 PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY------------------------------ 150 (235)
T ss_pred cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh------------------------------
Confidence 45554 789999999875 7888999999998875443110
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHcCCCCcCCHH
Q 005877 226 DDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-----GEPQSMEFLGEIYARGAGVERNYT 300 (672)
Q Consensus 226 ~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~ 300 (672)
..++...+.. .........+.+|.+|+.. +++.+|+..|+++++. ..+.+++.+|.+|.. .++++
T Consensus 151 ~~~a~~~~~~-~~~~~~~~~~~~a~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~----lg~~~ 220 (235)
T TIGR03302 151 APDAKKRMDY-LRNRLAGKELYVARFYLKR-----GAYVAAINRFETVVENYPDTPATEEALARLVEAYLK----LGLKD 220 (235)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHH----cCCHH
Confidence 0011111100 0001122334666666666 3777777777777653 124667777777776 67777
Q ss_pred HHHHHHHHHH
Q 005877 301 KALEWLTHAA 310 (672)
Q Consensus 301 ~A~~~~~~a~ 310 (672)
+|+.+++...
T Consensus 221 ~A~~~~~~l~ 230 (235)
T TIGR03302 221 LAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHHH
Confidence 7777666544
No 84
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.07 E-value=2e-08 Score=99.21 Aligned_cols=175 Identities=16% Similarity=0.079 Sum_probs=116.0
Q ss_pred CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--CH---HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--
Q 005877 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQ---KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-- 423 (672)
Q Consensus 351 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~---~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-- 423 (672)
.++.++.+|..+.. .+++++|+..|+++++.. ++ .+++.+|.++.. .+++++|+..|+++++..|
T Consensus 32 ~~~~~~~~g~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~----~~~~~~A~~~~~~~l~~~p~~ 103 (235)
T TIGR03302 32 PAEELYEEAKEALD----SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK----SGDYAEAIAAADRFIRLHPNH 103 (235)
T ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHCcCC
Confidence 45666667766666 667777777777666532 22 456667777666 6777777777777766653
Q ss_pred hh---HHHHHHHHHHhc--------CCHHHHHHHHHHHHHcC--CHHHH---HHHHHHHHHhCCCCcccCCCCCCCchHh
Q 005877 424 WS---SLSRWALESYLK--------GDVGKAFLLYSRMAELG--YEVAQ---SNAAWILDKYGEGSMCMGESGFCTDAER 487 (672)
Q Consensus 424 ~~---a~~~lg~~~~~~--------g~~~~A~~~~~~a~~~g--~~~a~---~nla~~l~~~~~~~~~~~~~~~~~~~~~ 487 (672)
+. +++.+|.+++.. |++++|+..|+++++.. +..+. ..++.+..
T Consensus 104 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~-------------------- 163 (235)
T TIGR03302 104 PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN-------------------- 163 (235)
T ss_pred CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH--------------------
Confidence 22 456666666654 67777888887776553 22221 11111110
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHcCCCCCCCHHH
Q 005877 488 HQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ-----SNAQAMFNLGYMHEHGQGLPLDLHL 562 (672)
Q Consensus 488 ~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~-----~~~~a~~~Lg~~y~~g~g~~~d~~~ 562 (672)
........+|.+|+ ..+++.+|+..|+++++. ..+++++.+|..|.. .|++++
T Consensus 164 --------------~~~~~~~~~a~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~----lg~~~~ 221 (235)
T TIGR03302 164 --------------RLAGKELYVARFYL----KRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLK----LGLKDL 221 (235)
T ss_pred --------------HHHHHHHHHHHHHH----HcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHH----cCCHHH
Confidence 01123457888898 889999999999999874 236899999999988 899999
Q ss_pred HHHHHHHHHhcCC
Q 005877 563 AKRYYDQALEVDP 575 (672)
Q Consensus 563 A~~~~~~A~~~~~ 575 (672)
|..+++......|
T Consensus 222 A~~~~~~l~~~~~ 234 (235)
T TIGR03302 222 AQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHhhCC
Confidence 9999887765544
No 85
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=3e-06 Score=91.25 Aligned_cols=224 Identities=20% Similarity=0.218 Sum_probs=142.1
Q ss_pred hhhHHHHHHHHHHHHhCCChHHHHHHHHHhhcCC--c----ccCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCH
Q 005877 105 VRVMEEATSEVESAAMEGDPHARSVLGFLYGMGM--M----RERN--KGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMH 176 (672)
Q Consensus 105 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~G~--g----~~~d--~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~~~~~ 176 (672)
.|+.+.|++-.+-. .....+-+++.+--... . ..|. ..+....+++|.+.++ +--...|.+-...|..
T Consensus 741 iG~MD~AfksI~~I---kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMl 816 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFI---KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGML 816 (1416)
T ss_pred eccHHHHHHHHHHH---hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhH
Confidence 57778877766541 11234445555443300 0 0111 2334455666666554 4455667777888999
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005877 177 DKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGL 256 (672)
Q Consensus 177 ~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~ 256 (672)
++|...|.+.-.-+ -+..+|...|..++|++.-+.--.----..+++.+.-+...
T Consensus 817 EeA~~lYr~ckR~D------------------------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear- 871 (1416)
T KOG3617|consen 817 EEALILYRQCKRYD------------------------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR- 871 (1416)
T ss_pred HHHHHHHHHHHHHH------------------------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh-
Confidence 99999999875422 25667888899999988766433223445677777766555
Q ss_pred CCcccCHHHHHHHHHHHHH----------------------cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC
Q 005877 257 RGLRRDRTKALMWFSKAAD----------------------KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQL 314 (672)
Q Consensus 257 ~~~~~~~~~A~~~~~~a~~----------------------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 314 (672)
+|.+.|+++|+|+=. ..++..+...|..... .|+.+.|+.+|..|-+
T Consensus 872 ----~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES----~GemdaAl~~Y~~A~D--- 940 (1416)
T KOG3617|consen 872 ----RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLES----VGEMDAALSFYSSAKD--- 940 (1416)
T ss_pred ----ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhc----ccchHHHHHHHHHhhh---
Confidence 589999999998611 1345555666666666 6777777777776543
Q ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHH
Q 005877 315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAA 383 (672)
Q Consensus 315 ~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~ 383 (672)
++.+-.+.-. +|+.++|-..-+ +.++-.|.|.||.+|.+ .+++.+|+.+|.+|-
T Consensus 941 ---~fs~VrI~C~-----qGk~~kAa~iA~---esgd~AAcYhlaR~YEn----~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ---YFSMVRIKCI-----QGKTDKAARIAE---ESGDKAACYHLARMYEN----DGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ---hhhheeeEee-----ccCchHHHHHHH---hcccHHHHHHHHHHhhh----hHHHHHHHHHHHHHH
Confidence 1222222221 456666655433 45888999999999999 899999999999874
No 86
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.2e-07 Score=92.71 Aligned_cols=261 Identities=14% Similarity=0.092 Sum_probs=205.4
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHH
Q 005877 157 GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQ 236 (672)
Q Consensus 157 ~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~a 236 (672)
++|..-+..+|.++...|++++|+-.|+++.-.++... . ...--+.+....|+++.--.+....
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i---------~-------~MD~Ya~LL~~eg~~e~~~~L~~~L 292 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNV---------E-------AMDLYAVLLGQEGGCEQDSALMDYL 292 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhh---------h-------hHHHHHHHHHhccCHhhHHHHHHHH
Confidence 58999999999999999999999999999876554311 1 1112455566777777655555444
Q ss_pred --HHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 005877 237 --AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ 312 (672)
Q Consensus 237 --a~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 312 (672)
.......-++--|...+.. ++++.|+.+-+|+++. .+..++..-|.+... .++.++|+-.|+.|...
T Consensus 293 f~~~~~ta~~wfV~~~~l~~~-----K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~----~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 293 FAKVKYTASHWFVHAQLLYDE-----KKFERALNFVEKCIDSEPRNHEALILKGRLLIA----LERHTQAVIAFRTAQML 363 (564)
T ss_pred Hhhhhcchhhhhhhhhhhhhh-----hhHHHHHHHHHHHhccCcccchHHHhccHHHHh----ccchHHHHHHHHHHHhc
Confidence 3333444444445554444 6999999999999985 578899999999999 99999999999999765
Q ss_pred --CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHH-HHHHcCCCchhcHHHHHHHHHHHHH--c
Q 005877 313 --QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLG-VMYYKGIGVKRDVKLACKYFLVAAN--A 385 (672)
Q Consensus 313 --~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg-~~y~~g~g~~~~~~~A~~~~~~A~~--~ 385 (672)
-+..++..|-.+|+. .+.+.+|...-..+... .++.+...+| .++... ..-.++|.+++++++. +
T Consensus 364 ap~rL~~Y~GL~hsYLA-----~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~d---p~~rEKAKkf~ek~L~~~P 435 (564)
T KOG1174|consen 364 APYRLEIYRGLFHSYLA-----QKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPD---PRMREKAKKFAEKSLKINP 435 (564)
T ss_pred chhhHHHHHHHHHHHHh-----hchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccC---chhHHHHHHHHHhhhccCC
Confidence 367788889899985 56899999888888764 5788888887 444332 5667899999999987 4
Q ss_pred CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877 386 GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-WSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (672)
Q Consensus 386 ~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g 454 (672)
+...|-..++.++.. .+.++.++.++++.+...+ ...+..||.++...+.+.+|+.+|..|+.++
T Consensus 436 ~Y~~AV~~~AEL~~~----Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 436 IYTPAVNLIAELCQV----EGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred ccHHHHHHHHHHHHh----hCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 567888999998886 8999999999999988774 4567889999999999999999999998875
No 87
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.00 E-value=1.1e-06 Score=104.94 Aligned_cols=350 Identities=13% Similarity=0.028 Sum_probs=236.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHH---HHcCC
Q 005877 165 AVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQ---AQKGN 241 (672)
Q Consensus 165 ~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~a---a~~~~ 241 (672)
..+..+...|++.+|+.++..+-+.... .......+......|+.+.+..+++.. ...++
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~d~~~~-----------------~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~ 408 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAGDAQLL-----------------RDILLQHGWSLFNQGELSLLEECLNALPWEVLLEN 408 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCHHHH-----------------HHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcC
Confidence 3445566667777777666554221100 001112334445567777766666553 23356
Q ss_pred HHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc----C-------CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH
Q 005877 242 AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----G-------EPQSMEFLGEIYARGAGVERNYTKALEWLTHAA 310 (672)
Q Consensus 242 ~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----~-------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 310 (672)
+......+.++... +++++|..++..+.+. + .......+|.++.. .+++++|..++++++
T Consensus 409 ~~l~~~~a~~~~~~-----g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al 479 (903)
T PRK04841 409 PRLVLLQAWLAQSQ-----HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN----DGDPEEAERLAELAL 479 (903)
T ss_pred cchHHHHHHHHHHC-----CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHH
Confidence 66667777777666 4999999999887642 1 12344566777777 899999999999998
Q ss_pred Hc---CC----HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCchhcHHHH
Q 005877 311 RQ---QL----YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVKRDVKLA 375 (672)
Q Consensus 311 ~~---~~----~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~~~~A 375 (672)
+. ++ ..+...+|.++.. .|++++|..+++++.+. +. ..+..++|.++.. .|++++|
T Consensus 480 ~~~~~~~~~~~~~a~~~lg~~~~~-----~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~----~G~~~~A 550 (903)
T PRK04841 480 AELPLTWYYSRIVATSVLGEVHHC-----KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA----QGFLQAA 550 (903)
T ss_pred hcCCCccHHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH----CCCHHHH
Confidence 63 12 2355678888764 67999999999999753 22 3466788999988 8999999
Q ss_pred HHHHHHHHHc----CC------HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC----C---hhHHHHHHHHHHhcC
Q 005877 376 CKYFLVAANA----GH------QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----P---WSSLSRWALESYLKG 438 (672)
Q Consensus 376 ~~~~~~A~~~----~~------~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~----~---~~a~~~lg~~~~~~g 438 (672)
..+++++.+. +. ......+|.++.. .+++++|...++++++.. + ..++..++.++...|
T Consensus 551 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G 626 (903)
T PRK04841 551 YETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE----WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARG 626 (903)
T ss_pred HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH----hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcC
Confidence 9999998762 11 2234567777776 799999999999987642 1 234566788899999
Q ss_pred CHHHHHHHHHHHHHcC----C-HHHHH---HHH-HHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC--H---
Q 005877 439 DVGKAFLLYSRMAELG----Y-EVAQS---NAA-WILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN--E--- 504 (672)
Q Consensus 439 ~~~~A~~~~~~a~~~g----~-~~a~~---nla-~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~--- 504 (672)
++++|...+.++.... . ..... .+. ..+.. .++.+.|..++........ .
T Consensus 627 ~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~g~~~~A~~~l~~~~~~~~~~~~~~ 690 (903)
T PRK04841 627 DLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM----------------TGDKEAAANWLRQAPKPEFANNHFL 690 (903)
T ss_pred CHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH----------------CCCHHHHHHHHHhcCCCCCccchhH
Confidence 9999999999985531 1 11111 111 11111 3466777777765443321 1
Q ss_pred -HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc----C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCC
Q 005877 505 -HAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ----S----NAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDP 575 (672)
Q Consensus 505 -~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~----~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 575 (672)
.....+|.++. ..+++++|...++++++. + ...++..+|..+.. .|+.++|..++.+|+++..
T Consensus 691 ~~~~~~~a~~~~----~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~----~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 691 QGQWRNIARAQI----LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQ----QGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhC
Confidence 12457888888 789999999999998763 2 24578888998877 8999999999999999864
Q ss_pred CC
Q 005877 576 AA 577 (672)
Q Consensus 576 ~~ 577 (672)
..
T Consensus 763 ~~ 764 (903)
T PRK04841 763 RT 764 (903)
T ss_pred cc
Confidence 43
No 88
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=1.2e-06 Score=85.89 Aligned_cols=392 Identities=12% Similarity=0.012 Sum_probs=237.7
Q ss_pred hhhHHHHHHHHHHHHhCC---ChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhCCCH--HHHHHHHHHHhccCCHHHH
Q 005877 105 VRVMEEATSEVESAAMEG---DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNI--QSKMAVAYTYLRQDMHDKA 179 (672)
Q Consensus 105 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~--~a~~~Lg~~y~~~~~~~~A 179 (672)
.+||..|+.+++-..+.+ ......-+|.+|.. .+||++|...|+.+.+.+++ +...+|+.++.-.|.|.+|
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~fh----LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFH----LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHh----hccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence 789999999999866553 34677789999998 99999999999999987655 5567899999999999998
Q ss_pred HHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 005877 180 VKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGL 259 (672)
Q Consensus 180 ~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~ 259 (672)
...-.++.+ .|... |+ +-.+-.+.++.++-..+-+..- +..+-++.|+.+.+..
T Consensus 111 ~~~~~ka~k-----------~pL~~--RL-------lfhlahklndEk~~~~fh~~Lq--D~~EdqLSLAsvhYmR---- 164 (557)
T KOG3785|consen 111 KSIAEKAPK-----------TPLCI--RL-------LFHLAHKLNDEKRILTFHSSLQ--DTLEDQLSLASVHYMR---- 164 (557)
T ss_pred HHHHhhCCC-----------ChHHH--HH-------HHHHHHHhCcHHHHHHHHHHHh--hhHHHHHhHHHHHHHH----
Confidence 766555422 11111 11 1222335555555444433332 2336677777776655
Q ss_pred ccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCC
Q 005877 260 RRDRTKALMWFSKAADKG--EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKN 335 (672)
Q Consensus 260 ~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~ 335 (672)
..|++|++.|++.+..+ ....-.+++.+|.. ..-++-+-+.+.--+.+ +.+.+.+..+-..++-. +
T Consensus 165 -~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyK----lDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~-----n 234 (557)
T KOG3785|consen 165 -MHYQEAIDVYKRVLQDNPEYIALNVYMALCYYK----LDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLI-----N 234 (557)
T ss_pred -HHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHh----cchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhh-----c
Confidence 38999999999987642 23345678888887 77777777766666654 35556554444333311 2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHH
Q 005877 336 YTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALY 415 (672)
Q Consensus 336 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~ 415 (672)
-..|.+-.+..++..+.. +-....+..+..-+-++-+-|++.+--.. ..-|+|..+|...|.+ ++|..+|+.+.
T Consensus 235 gr~ae~E~k~ladN~~~~-~~f~~~l~rHNLVvFrngEgALqVLP~L~-~~IPEARlNL~iYyL~----q~dVqeA~~L~ 308 (557)
T KOG3785|consen 235 GRTAEDEKKELADNIDQE-YPFIEYLCRHNLVVFRNGEGALQVLPSLM-KHIPEARLNLIIYYLN----QNDVQEAISLC 308 (557)
T ss_pred cchhHHHHHHHHhccccc-chhHHHHHHcCeEEEeCCccHHHhchHHH-hhChHhhhhheeeecc----cccHHHHHHHH
Confidence 233444444444443211 11122222222222334444544433222 2357899999999988 89999999987
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCHHH-------HHHHHHHH----HHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCc
Q 005877 416 KLVAERGPWSSLSRWALESYLKGDVGK-------AFLLYSRM----AELGYEVAQSNAAWILDKYGEGSMCMGESGFCTD 484 (672)
Q Consensus 416 ~~a~~~~~~~a~~~lg~~~~~~g~~~~-------A~~~~~~a----~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~ 484 (672)
+..--. .|.-+.-.|.+....|+-.. |...|+.. .+.+-....-..|..+.-
T Consensus 309 Kdl~Pt-tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL---------------- 371 (557)
T KOG3785|consen 309 KDLDPT-TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFL---------------- 371 (557)
T ss_pred hhcCCC-ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHH----------------
Confidence 643211 23334445666655554333 33333332 111111111112221111
Q ss_pred hHhHHHHHHHHH--HHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHcCCCCCCC
Q 005877 485 AERHQCAHSLWW--QASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ---SNAQAMFNLGYMHEHGQGLPLD 559 (672)
Q Consensus 485 ~~~~~~A~~~~~--~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~a~~~Lg~~y~~g~g~~~d 559 (672)
..++++-+.++. ++---+|.+..++++..+. ..|+|.+|.+.|-+...+ +.....-.|+.+|-+ .+.
T Consensus 372 ~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~----atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~----nkk 443 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKL----ATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIR----NKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHH----HhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHh----cCC
Confidence 345666666665 3445567778889999999 889999999999887543 445566778889876 667
Q ss_pred HHHHHHHH
Q 005877 560 LHLAKRYY 567 (672)
Q Consensus 560 ~~~A~~~~ 567 (672)
.+.|-..+
T Consensus 444 P~lAW~~~ 451 (557)
T KOG3785|consen 444 PQLAWDMM 451 (557)
T ss_pred chHHHHHH
Confidence 77765444
No 89
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.97 E-value=3.9e-06 Score=88.74 Aligned_cols=356 Identities=13% Similarity=0.062 Sum_probs=214.7
Q ss_pred CCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--C
Q 005877 82 PGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--G 157 (672)
Q Consensus 82 ~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~ 157 (672)
+..++.+-..|+..-. .|+-++|....+.+. ++...-+++.+|.++.. .++|++|++||+.|.. +
T Consensus 38 ~eHgeslAmkGL~L~~-------lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~----dK~Y~eaiKcy~nAl~~~~ 106 (700)
T KOG1156|consen 38 PEHGESLAMKGLTLNC-------LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS----DKKYDEAIKCYRNALKIEK 106 (700)
T ss_pred CccchhHHhccchhhc-------ccchHHHHHHHHHHhccCcccchhHHHHHHHHhh----hhhHHHHHHHHHHHHhcCC
Confidence 3345555555555332 577889999998854 45778899999999998 9999999999999976 6
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHH
Q 005877 158 GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQA 237 (672)
Q Consensus 158 ~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa 237 (672)
+|...+..|+.+-.+.++++.....-.+.++..+.... -+...+..+.-.|++..|+.+++...
T Consensus 107 dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra----------------~w~~~Avs~~L~g~y~~A~~il~ef~ 170 (700)
T KOG1156|consen 107 DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRA----------------SWIGFAVAQHLLGEYKMALEILEEFE 170 (700)
T ss_pred CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999998888777777766543210 01123444556778888877776643
Q ss_pred HcC----------CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHH
Q 005877 238 QKG----------NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEW 305 (672)
Q Consensus 238 ~~~----------~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 305 (672)
... ...+......+.... +.+++|.+.+.+--.. +.-.....-+.++.. .+++++|+..
T Consensus 171 ~t~~~~~s~~~~e~se~~Ly~n~i~~E~-----g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~k----l~~lEeA~~~ 241 (700)
T KOG1156|consen 171 KTQNTSPSKEDYEHSELLLYQNQILIEA-----GSLQKALEHLLDNEKQIVDKLAFEETKADLLMK----LGQLEEAVKV 241 (700)
T ss_pred HhhccCCCHHHHHHHHHHHHHHHHHHHc-----ccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHH----HhhHHhHHHH
Confidence 332 122333333344433 2456666655543221 112223344566776 7888888888
Q ss_pred HHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHH-HHHHHH----------------------------------Hh
Q 005877 306 LTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAK-EYFEKA----------------------------------AD 348 (672)
Q Consensus 306 ~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~~A~-~~~~~a----------------------------------~~ 348 (672)
|...+..+ +..-+..+-.++.. .+ +.-+++ ..|... ++
T Consensus 242 y~~Ll~rnPdn~~Yy~~l~~~lgk----~~-d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~ 316 (700)
T KOG1156|consen 242 YRRLLERNPDNLDYYEGLEKALGK----IK-DMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLS 316 (700)
T ss_pred HHHHHhhCchhHHHHHHHHHHHHH----Hh-hhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhh
Confidence 88887764 21111122222210 01 333333 333333 33
Q ss_pred CCCHHHHHHHHHHHHcCCCchhc---HHHHHHHHHHHHHc------------CCH----HHHHHHHHHHHcCCCccCCHH
Q 005877 349 NEEAGGHYNLGVMYYKGIGVKRD---VKLACKYFLVAANA------------GHQ----KAFYQLAKMFHTGVGLKKNLH 409 (672)
Q Consensus 349 ~~~~~a~~~Lg~~y~~g~g~~~~---~~~A~~~~~~A~~~------------~~~----~a~~~L~~~y~~g~g~~~~~~ 409 (672)
.|-|.....+-.+|.. ... .++-+.-|...+.. ..| ...+.++..|.. .++++
T Consensus 317 Kg~p~vf~dl~SLyk~----p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~----~g~~~ 388 (700)
T KOG1156|consen 317 KGVPSVFKDLRSLYKD----PEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDK----LGDYE 388 (700)
T ss_pred cCCCchhhhhHHHHhc----hhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHH----cccHH
Confidence 3334444444444433 110 01111111111111 123 334555655655 89999
Q ss_pred HHHHHHHHHHHcCChh--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCcccCCCCCCCch
Q 005877 410 MATALYKLVAERGPWS--SLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSN--AAWILDKYGEGSMCMGESGFCTDA 485 (672)
Q Consensus 410 ~A~~~~~~a~~~~~~~--a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~n--la~~l~~~~~~~~~~~~~~~~~~~ 485 (672)
.|..|...|+...|.. -+..-|.++...|+++.|..++..+-+.+.+.-..| -|...-+ .
T Consensus 389 ~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLr----------------A 452 (700)
T KOG1156|consen 389 VALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLR----------------A 452 (700)
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHH----------------c
Confidence 9999999999888754 466678889999999999999999999987665544 4444333 5
Q ss_pred HhHHHHHHHHHHHHhCC
Q 005877 486 ERHQCAHSLWWQASEQG 502 (672)
Q Consensus 486 ~~~~~A~~~~~~a~~~~ 502 (672)
++.++|.+...+--..|
T Consensus 453 n~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 453 NEIEEAEEVLSKFTREG 469 (700)
T ss_pred cccHHHHHHHHHhhhcc
Confidence 66777877766543333
No 90
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.96 E-value=2e-06 Score=86.08 Aligned_cols=279 Identities=15% Similarity=0.058 Sum_probs=160.7
Q ss_pred CCChhhHHHHHHHHHHHHhC-CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC-CC--HHHHHHHHHHHhccCCHH
Q 005877 102 NGDVRVMEEATSEVESAAME-GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG-GN--IQSKMAVAYTYLRQDMHD 177 (672)
Q Consensus 102 ~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~-~~--~~a~~~Lg~~y~~~~~~~ 177 (672)
.-..|||.+|.+...++++- ..|...+.+|---.. ..+|.++|-.|..++++. |+ .......+.+....+|++
T Consensus 94 ~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~---qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~ 170 (400)
T COG3071 94 KLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQ---QRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYP 170 (400)
T ss_pred HHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHH---hcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCch
Confidence 33479999999999996666 446655555543333 278999999999999985 43 356677788888899999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcC---CHHHHHHHHHHHH-
Q 005877 178 KAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG---NAGAMYKIGLFYY- 253 (672)
Q Consensus 178 ~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~---~~~a~~~Lg~~y~- 253 (672)
.|..-..++.++.+.. .+.+++ ...+|...|+++....++.+..+.+ ++++.-.--..+.
T Consensus 171 aA~~~v~~ll~~~pr~---------~~vlrL-------a~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~g 234 (400)
T COG3071 171 AARENVDQLLEMTPRH---------PEVLRL-------ALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEG 234 (400)
T ss_pred hHHHHHHHHHHhCcCC---------hHHHHH-------HHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence 9998888888765431 111222 4556778888888888888776664 3332111111111
Q ss_pred --hcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcC
Q 005877 254 --FGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-LYSAYNGIGYLYVKG 328 (672)
Q Consensus 254 --~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g 328 (672)
+.. .-..+.+.-..|.+.--. ..+|.....++.-+.. .++.++|.++.+.+++.. ++.-...++.+-
T Consensus 235 lL~q~-~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~----l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~--- 306 (400)
T COG3071 235 LLQQA-RDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIR----LGDHDEAQEIIEDALKRQWDPRLCRLIPRLR--- 306 (400)
T ss_pred HHHHH-hccccchHHHHHHHhccHHhhcChhHHHHHHHHHHH----cCChHHHHHHHHHHHHhccChhHHHHHhhcC---
Confidence 000 000111111122222111 2445555555555555 666666666666666654 333111122111
Q ss_pred CCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCcc
Q 005877 329 YGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG-HQKAFYQLAKMFHTGVGLK 405 (672)
Q Consensus 329 ~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~L~~~y~~g~g~~ 405 (672)
.+|+.+=++..++.+.. ++|..+..||.++.+ .+.+.+|..+|+.|+... +...+..+|..+.. .
T Consensus 307 ----~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k----~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~----~ 374 (400)
T COG3071 307 ----PGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK----NKLWGKASEALEAALKLRPSASDYAELADALDQ----L 374 (400)
T ss_pred ----CCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH----hhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH----c
Confidence 23555555555555443 355666666666666 666666666666665543 44555566666665 5
Q ss_pred CCHHHHHHHHHHHH
Q 005877 406 KNLHMATALYKLVA 419 (672)
Q Consensus 406 ~~~~~A~~~~~~a~ 419 (672)
++..+|...+++++
T Consensus 375 g~~~~A~~~r~e~L 388 (400)
T COG3071 375 GEPEEAEQVRREAL 388 (400)
T ss_pred CChHHHHHHHHHHH
Confidence 66666666665554
No 91
>PLN02789 farnesyltranstransferase
Probab=98.96 E-value=7.3e-07 Score=91.09 Aligned_cols=246 Identities=12% Similarity=0.021 Sum_probs=154.5
Q ss_pred hhhHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccC-CHHHHHH
Q 005877 105 VRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQD-MHDKAVK 181 (672)
Q Consensus 105 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~-~~~~A~~ 181 (672)
..+|.+|..+|+..... .+..++|+..+.+++. +++..+....+.++...+ ++++++.
T Consensus 33 ~~~~~~a~~~~ra~l~~-------------------~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~ 93 (320)
T PLN02789 33 TPEFREAMDYFRAVYAS-------------------DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELD 93 (320)
T ss_pred CHHHHHHHHHHHHHHHc-------------------CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHH
Confidence 46677777777664332 4567788888888876 678888888888888776 5788888
Q ss_pred HHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc
Q 005877 182 LYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRR 261 (672)
Q Consensus 182 ~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~ 261 (672)
++++++...+ .+..++...+.++...+ ..
T Consensus 94 ~~~~~i~~np------------------------------------------------knyqaW~~R~~~l~~l~---~~ 122 (320)
T PLN02789 94 FAEDVAEDNP------------------------------------------------KNYQIWHHRRWLAEKLG---PD 122 (320)
T ss_pred HHHHHHHHCC------------------------------------------------cchHHhHHHHHHHHHcC---ch
Confidence 8888776443 34445555555544331 01
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcC--CCCCcCC
Q 005877 262 DRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKG--YGVEKKN 335 (672)
Q Consensus 262 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g--~g~~~~~ 335 (672)
..++++.+++++++. .+..++...|.++.. .+++++++.++.++++. .+..+++..|.+.... .+.....
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~----l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRT----LGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccccc
Confidence 135566777776653 466777777777776 67777777777777764 3666777777665431 0111113
Q ss_pred HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCc-------
Q 005877 336 YTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGL------- 404 (672)
Q Consensus 336 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~------- 404 (672)
.+.++++..++++. ++..+++.++.++...........+|++.+.++.+. ..+.++..|+.+|..+...
T Consensus 199 ~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~ 278 (320)
T PLN02789 199 RDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDT 278 (320)
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhh
Confidence 45677777777765 477777777777765211224455577777776553 3567777788777764321
Q ss_pred -------cCCHHHHHHHHHHHHHcCCh
Q 005877 405 -------KKNLHMATALYKLVAERGPW 424 (672)
Q Consensus 405 -------~~~~~~A~~~~~~a~~~~~~ 424 (672)
..+.++|..+|+...+.+|.
T Consensus 279 ~~~~~~~~~~~~~a~~~~~~l~~~d~i 305 (320)
T PLN02789 279 VDTLAEELSDSTLAQAVCSELEVADPM 305 (320)
T ss_pred hhccccccccHHHHHHHHHHHHhhCcH
Confidence 12446677777766443443
No 92
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=3.8e-06 Score=87.88 Aligned_cols=435 Identities=12% Similarity=0.012 Sum_probs=261.3
Q ss_pred CccccccCCCCCCcccccCCCC--CCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHH--HHhCCChHHHHHHHHHhh
Q 005877 60 ESMTEENLDPGSWSPVFEPSID--PGAINGSYYITISKMMSAVTNGDVRVMEEATSEVES--AAMEGDPHARSVLGFLYG 135 (672)
Q Consensus 60 ~~~~~~~~~~~~a~~~~~~~~~--~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~--a~~~~~~~a~~~Lg~~y~ 135 (672)
..+....+++++|.+...+.+. |+++.+.+-.-++.+. ...|++|+...++ +...++... +.-+.|..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq-------~~ky~~ALk~ikk~~~~~~~~~~~-fEKAYc~Y 90 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQ-------LDKYEDALKLIKKNGALLVINSFF-FEKAYCEY 90 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhh-------hhHHHHHHHHHHhcchhhhcchhh-HHHHHHHH
Confidence 3445556777777766666533 5667777666666553 5789999977777 333344333 67777777
Q ss_pred cCCcccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhh
Q 005877 136 MGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEEN 215 (672)
Q Consensus 136 ~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (672)
. .+..++|+..++ ..+..+...+-.-|.++.+.++|++|++.|+.+++........ ..+ .+
T Consensus 91 r----lnk~Dealk~~~-~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~--------~~r------~n 151 (652)
T KOG2376|consen 91 R----LNKLDEALKTLK-GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE--------ERR------AN 151 (652)
T ss_pred H----cccHHHHHHHHh-cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH--------HHH------HH
Confidence 6 888999999998 6666677788888999999999999999999987643221100 000 00
Q ss_pred hhHhhhccCChHHHHHHHHHH--HHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-------C---------
Q 005877 216 KGALRKSRGEDDEAFQILEYQ--AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-------G--------- 277 (672)
Q Consensus 216 ~~~~~~~~g~~~~Ai~~~~~a--a~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-------~--------- 277 (672)
+-.+ +--..+ ++.+.. ...+.-+.+|+.+-++... +++.+|++.+++|.+. +
T Consensus 152 l~a~----~a~l~~-~~~q~v~~v~e~syel~yN~Ac~~i~~-----gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~ 221 (652)
T KOG2376|consen 152 LLAV----AAALQV-QLLQSVPEVPEDSYELLYNTACILIEN-----GKYNQAIELLEKALRICREKLEDEDTNEEEIEE 221 (652)
T ss_pred HHHH----HHhhhH-HHHHhccCCCcchHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHHhhcccccchhhHHH
Confidence 1000 000000 111111 1124678889999999888 4999999999999431 1
Q ss_pred -CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCCCCcCCHH--HHHHHHHHH--
Q 005877 278 -EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQL------YSAYNGIGYLYVKGYGVEKKNYT--KAKEYFEKA-- 346 (672)
Q Consensus 278 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~y~~g~g~~~~~~~--~A~~~~~~a-- 346 (672)
-......|+.++.. .|+.++|...|...+..+. +.+.++|-.+-.. + ++. .++..++.-
T Consensus 222 el~~IrvQlayVlQ~----~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d-----~-~~~d~~~l~~k~~~~~ 291 (652)
T KOG2376|consen 222 ELNPIRVQLAYVLQL----QGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKD-----Q-NYFDGDLLKSKKSQVF 291 (652)
T ss_pred HHHHHHHHHHHHHHH----hcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccc-----c-ccCchHHHHHHHHHHH
Confidence 13466788888888 9999999999999887652 2334455443321 1 111 122222211
Q ss_pred ----------HhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHH--HHHHHHHHcCCCccCCHHHHH
Q 005877 347 ----------ADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAF--YQLAKMFHTGVGLKKNLHMAT 412 (672)
Q Consensus 347 ----------~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~--~~L~~~y~~g~g~~~~~~~A~ 412 (672)
....-...+.|.+.+-+. .+.-+.+. +..+.. ..+... .-+-..+.. ....+.+|+
T Consensus 292 ~l~~~~l~~Ls~~qk~~i~~N~~lL~l~----tnk~~q~r---~~~a~lp~~~p~~~~~~ll~~~t~~---~~~~~~ka~ 361 (652)
T KOG2376|consen 292 KLAEFLLSKLSKKQKQAIYRNNALLALF----TNKMDQVR---ELSASLPGMSPESLFPILLQEATKV---REKKHKKAI 361 (652)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHH---HHHHhCCccCchHHHHHHHHHHHHH---HHHHHhhhH
Confidence 111223334455544433 22222222 222221 122211 112222221 122478899
Q ss_pred HHHHHHHHcCChh---HHHHHHHHHHhcCCHHHHHHHHH--------HHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCC
Q 005877 413 ALYKLVAERGPWS---SLSRWALESYLKGDVGKAFLLYS--------RMAELGYEVAQSNAAWILDKYGEGSMCMGESGF 481 (672)
Q Consensus 413 ~~~~~a~~~~~~~---a~~~lg~~~~~~g~~~~A~~~~~--------~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~ 481 (672)
+++....+..+.. ..+.++......|+++.|++.+. ...+.++.++..-+...+.. +..+.
T Consensus 362 e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~--------~~~~~ 433 (652)
T KOG2376|consen 362 ELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYY--------KIKDN 433 (652)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHH--------hccCC
Confidence 9999988887655 56677778889999999999999 55566666665544433322 11222
Q ss_pred CCchHhHHHHHHHHHHHHhCCC-H-HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCC
Q 005877 482 CTDAERHQCAHSLWWQASEQGN-E-HAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLP 557 (672)
Q Consensus 482 ~~~~~~~~~A~~~~~~a~~~~~-~-~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~ 557 (672)
.....-+++|+.||+....... - ..+-.++..-. ..|+-++|...+++-++. ++.+.+..|-..|. .
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~l----r~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~-----~ 504 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKL----RHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYA-----R 504 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHH----hcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHH-----h
Confidence 3345568899999996433222 2 22234444444 458999999999999884 67777777776665 3
Q ss_pred CCHHHHHHHHH
Q 005877 558 LDLHLAKRYYD 568 (672)
Q Consensus 558 ~d~~~A~~~~~ 568 (672)
-|.++|..+=+
T Consensus 505 ~d~eka~~l~k 515 (652)
T KOG2376|consen 505 LDPEKAESLSK 515 (652)
T ss_pred cCHHHHHHHhh
Confidence 57777776644
No 93
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.91 E-value=5.6e-08 Score=87.64 Aligned_cols=117 Identities=15% Similarity=0.019 Sum_probs=66.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHH
Q 005877 412 TALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQ 489 (672)
Q Consensus 412 ~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~ 489 (672)
..+|+++++..|.. ...+|..+...|++++|+..|++++.. .+..++.++|.++.. .++++
T Consensus 13 ~~~~~~al~~~p~~-~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~----------------~g~~~ 75 (144)
T PRK15359 13 EDILKQLLSVDPET-VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM----------------LKEYT 75 (144)
T ss_pred HHHHHHHHHcCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----------------HhhHH
Confidence 35666666666543 445677777777777777777776544 344555555555544 44555
Q ss_pred HHHHHHHHHHh--CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHH
Q 005877 490 CAHSLWWQASE--QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYM 549 (672)
Q Consensus 490 ~A~~~~~~a~~--~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~ 549 (672)
+|+..|++++. ++++.+++++|.++. ..|++++|+..|++|++ ++++.+..++|..
T Consensus 76 ~A~~~y~~Al~l~p~~~~a~~~lg~~l~----~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 76 TAINFYGHALMLDASHPEPVYQTGVCLK----MMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 55555554433 344555556666555 55566666666666544 2455555555543
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.91 E-value=2.4e-06 Score=101.96 Aligned_cols=280 Identities=13% Similarity=0.018 Sum_probs=181.7
Q ss_pred hhHhhhccCChHHHHHHHHHHHHc----C-------CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc---CC---
Q 005877 216 KGALRKSRGEDDEAFQILEYQAQK----G-------NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK---GE--- 278 (672)
Q Consensus 216 ~~~~~~~~g~~~~Ai~~~~~aa~~----~-------~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~---~~--- 278 (672)
.+.+....|++++|...++.+.+. + .......+|.++... +++++|..++++++.. ++
T Consensus 415 ~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~ 489 (903)
T PRK04841 415 QAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND-----GDPEEAERLAELALAELPLTWYYS 489 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHhcCCCccHHH
Confidence 344555666777777766665321 0 123344456666555 4888888888887762 12
Q ss_pred -HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC
Q 005877 279 -PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ----QL----YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN 349 (672)
Q Consensus 279 -~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~ 349 (672)
..+...+|.++.. .+++++|..+++++++. +. ..+...+|.++.. .|+++.|..+++++.+.
T Consensus 490 ~~~a~~~lg~~~~~----~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~-----~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 490 RIVATSVLGEVHHC----KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA-----QGFLQAAYETQEKAFQL 560 (903)
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHH
Confidence 2355677777777 88888888888888743 21 2355677777764 57888888888887653
Q ss_pred ----CC------HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc----C---CHHHHHHHHHHHHcCCCccCCHHHHH
Q 005877 350 ----EE------AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----G---HQKAFYQLAKMFHTGVGLKKNLHMAT 412 (672)
Q Consensus 350 ----~~------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~---~~~a~~~L~~~y~~g~g~~~~~~~A~ 412 (672)
+. ......+|.++.. .|++++|...+.+++.. + ...++..++.++.. .++++.|.
T Consensus 561 ~~~~~~~~~~~~~~~~~~la~~~~~----~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~G~~~~A~ 632 (903)
T PRK04841 561 IEEQHLEQLPMHEFLLRIRAQLLWE----WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA----RGDLDNAR 632 (903)
T ss_pred HHHhccccccHHHHHHHHHHHHHHH----hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH----cCCHHHHH
Confidence 11 2234566777777 78888888888887652 1 23455567777776 78888888
Q ss_pred HHHHHHHHcCC-----hhHHH---H-HHHHHHhcCCHHHHHHHHHHHHHcCC--H----HHHHHHHHHHHHhCCCCcccC
Q 005877 413 ALYKLVAERGP-----WSSLS---R-WALESYLKGDVGKAFLLYSRMAELGY--E----VAQSNAAWILDKYGEGSMCMG 477 (672)
Q Consensus 413 ~~~~~a~~~~~-----~~a~~---~-lg~~~~~~g~~~~A~~~~~~a~~~g~--~----~a~~nla~~l~~~~~~~~~~~ 477 (672)
..+.++..... ..... . ....+...|+.++|..++........ . ....+++.++..
T Consensus 633 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~--------- 703 (903)
T PRK04841 633 RYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL--------- 703 (903)
T ss_pred HHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH---------
Confidence 88888855321 11111 1 12334457888888888766543221 1 113456666655
Q ss_pred CCCCCCchHhHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 005877 478 ESGFCTDAERHQCAHSLWWQASEQ----GN----EHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ 537 (672)
Q Consensus 478 ~~~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~ 537 (672)
.+++++|...++++... +. ..++..+|.++. ..++.++|..++++|++.
T Consensus 704 -------~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~----~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 704 -------LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW----QQGRKSEAQRVLLEALKL 760 (903)
T ss_pred -------cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHH
Confidence 55778888888876442 22 346778999999 899999999999999875
No 95
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.88 E-value=2e-05 Score=83.47 Aligned_cols=400 Identities=15% Similarity=0.093 Sum_probs=218.6
Q ss_pred CchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHH
Q 005877 86 NGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQ 161 (672)
Q Consensus 86 ~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~ 161 (672)
.++|..++..+. .+.|.+.++..++.. .+.+++...+.|..... .++-++|..+...++. ....-
T Consensus 8 ~~lF~~~lk~yE-------~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~----lg~~~ea~~~vr~glr~d~~S~v 76 (700)
T KOG1156|consen 8 NALFRRALKCYE-------TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNC----LGKKEEAYELVRLGLRNDLKSHV 76 (700)
T ss_pred HHHHHHHHHHHH-------HHHHHhHHHHHHHHHHhCCccchhHHhccchhhc----ccchHHHHHHHHHHhccCcccch
Confidence 456666666553 578888888888844 35788999999988776 8899999999999887 45667
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCC
Q 005877 162 SKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGN 241 (672)
Q Consensus 162 a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~ 241 (672)
.+..+|.++...++|++|+++|+.|+...++ |
T Consensus 77 CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d------------------------------------------------N 108 (700)
T KOG1156|consen 77 CWHVLGLLQRSDKKYDEAIKCYRNALKIEKD------------------------------------------------N 108 (700)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC------------------------------------------------c
Confidence 8888999999999999999999999875433 3
Q ss_pred HHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC----CH
Q 005877 242 AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ----LY 315 (672)
Q Consensus 242 ~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~ 315 (672)
...+..|+.+-.+. +|++-....=.+.++ ++.-..+..++..+.- .+++..|....+...+.. ++
T Consensus 109 ~qilrDlslLQ~Qm-----Rd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L----~g~y~~A~~il~ef~~t~~~~~s~ 179 (700)
T KOG1156|consen 109 LQILRDLSLLQIQM-----RDYEGYLETRNQLLQLRPSQRASWIGFAVAQHL----LGEYKMALEILEEFEKTQNTSPSK 179 (700)
T ss_pred HHHHHHHHHHHHHH-----HhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhccCCCH
Confidence 33333333333332 233332222222222 1222222333333333 445555544444333221 11
Q ss_pred HHH-HHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHH
Q 005877 316 SAY-NGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFY 392 (672)
Q Consensus 316 ~a~-~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~ 392 (672)
.-+ .....+|....-.+.+..++|++.+..--.. +.-.....-|.+++. .+++++|+..|...+..++....+
T Consensus 180 ~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~k----l~~lEeA~~~y~~Ll~rnPdn~~Y 255 (700)
T KOG1156|consen 180 EDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMK----LGQLEEAVKVYRRLLERNPDNLDY 255 (700)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHH----HhhHHhHHHHHHHHHhhCchhHHH
Confidence 111 1111122111001123455555554432211 112222334667777 888999999999888877655545
Q ss_pred HHHHHHHcCCCccCCHHHHH-HHHHHHHHcCCh-hHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHh
Q 005877 393 QLAKMFHTGVGLKKNLHMAT-ALYKLVAERGPW-SSLSRWALESYLKGDVGKAF-LLYSRMAELGYEVAQSNAAWILDKY 469 (672)
Q Consensus 393 ~L~~~y~~g~g~~~~~~~A~-~~~~~a~~~~~~-~a~~~lg~~~~~~g~~~~A~-~~~~~a~~~g~~~a~~nla~~l~~~ 469 (672)
+.+..-..| .-.+.-+++ ..|....+.-+- ....+++.....-.++.... .++..-++.|-+..-.++-.+|..
T Consensus 256 y~~l~~~lg--k~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~- 332 (700)
T KOG1156|consen 256 YEGLEKALG--KIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKD- 332 (700)
T ss_pred HHHHHHHHH--HHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhc-
Confidence 444332221 134555555 666655554432 22333333333223333333 334444566655555555444432
Q ss_pred CCCCcccCCCCCCCchHhHHHHHHHHHHHH------------hCCCHHH----HHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 005877 470 GEGSMCMGESGFCTDAERHQCAHSLWWQAS------------EQGNEHA----ALLIGDAYYYGRGTQRDYERAAEAYMH 533 (672)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~------------~~~~~~a----~~~lG~~y~~g~g~~~d~~~A~~~~~~ 533 (672)
+....=.++=+..|.... ++.+|.+ ++.++.-|. ..++++.|..|+..
T Consensus 333 ------------p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D----~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 333 ------------PEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYD----KLGDYEVALEYIDL 396 (700)
T ss_pred ------------hhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHH----HcccHHHHHHHHHH
Confidence 000001111111222111 1123332 235666666 78999999999999
Q ss_pred HHhcCC--HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcC-CCCcch
Q 005877 534 ARSQSN--AQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVD-PAAKLP 580 (672)
Q Consensus 534 A~~~~~--~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~-~~~~~~ 580 (672)
|++.-. ++-+..=|.|+.| .|+++.|..|.+.|.++| +|..+.
T Consensus 397 AIdHTPTliEly~~KaRI~kH----~G~l~eAa~~l~ea~elD~aDR~IN 442 (700)
T KOG1156|consen 397 AIDHTPTLIELYLVKARIFKH----AGLLDEAAAWLDEAQELDTADRAIN 442 (700)
T ss_pred HhccCchHHHHHHHHHHHHHh----cCChHHHHHHHHHHHhccchhHHHH
Confidence 987532 3333344678877 889999999999999997 555543
No 96
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.84 E-value=1.5e-05 Score=80.09 Aligned_cols=242 Identities=12% Similarity=0.010 Sum_probs=141.5
Q ss_pred cCCHHHHHHHHHHHHHc-CCHHHHHH--HHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCchh
Q 005877 296 ERNYTKALEWLTHAARQ-QLYSAYNG--IGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKR 370 (672)
Q Consensus 296 ~~~~~~A~~~~~~a~~~-~~~~a~~~--Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~ 370 (672)
.+|++.+-.|+.++.+. ++..-... ...+... ++|+..|..-..++.++. ++.+..-.-.+|.. .|
T Consensus 131 rgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~-----~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~----~g 201 (400)
T COG3071 131 RGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN-----RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIR----LG 201 (400)
T ss_pred cccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh-----CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHH----hc
Confidence 45555555555555554 22222222 2222222 345555555555555543 45555555555555 55
Q ss_pred cHHHHHHHHHHHHHcC---CHHH-----HHHHHHHHHcCCCccCCHHHHHHHHHHHH--HcCChhHHHHHHHHHHhcCCH
Q 005877 371 DVKLACKYFLVAANAG---HQKA-----FYQLAKMFHTGVGLKKNLHMATALYKLVA--ERGPWSSLSRWALESYLKGDV 440 (672)
Q Consensus 371 ~~~~A~~~~~~A~~~~---~~~a-----~~~L~~~y~~g~g~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~~~~~g~~ 440 (672)
++........+..+.+ +++. +-+.|.+-..+ ..++.+.=..+.+..- .+.++.....++.-+...|++
T Consensus 202 ~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~--~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~ 279 (400)
T COG3071 202 AWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR--DDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDH 279 (400)
T ss_pred cHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh--ccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCCh
Confidence 5555555555544422 2211 11222221110 0111111222444331 223466666777778889999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhCC
Q 005877 441 GKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS--EQGNEHAALLIGDAYYYGR 518 (672)
Q Consensus 441 ~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lG~~y~~g~ 518 (672)
++|.++.+.+++.+...- +-..+... . .++...=++..++.+ .++++..+.+||.+++
T Consensus 280 ~~A~~~i~~~Lk~~~D~~---L~~~~~~l-----------~---~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~--- 339 (400)
T COG3071 280 DEAQEIIEDALKRQWDPR---LCRLIPRL-----------R---PGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLAL--- 339 (400)
T ss_pred HHHHHHHHHHHHhccChh---HHHHHhhc-----------C---CCCchHHHHHHHHHHHhCCCChhHHHHHHHHHH---
Confidence 999999999988764433 23333221 1 222333333333322 4566889999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhc
Q 005877 519 GTQRDYERAAEAYMHARSQ-SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEV 573 (672)
Q Consensus 519 g~~~d~~~A~~~~~~A~~~-~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 573 (672)
+.+.+.+|..+++.|++. .+......||..++. .++..+|-+.++.++-+
T Consensus 340 -k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~----~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 340 -KNKLWGKASEALEAALKLRPSASDYAELADALDQ----LGEPEEAEQVRREALLL 390 (400)
T ss_pred -HhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH----cCChHHHHHHHHHHHHH
Confidence 999999999999999886 677888999999998 89999999999999855
No 97
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=4.1e-07 Score=91.07 Aligned_cols=259 Identities=17% Similarity=0.047 Sum_probs=156.5
Q ss_pred cCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhH
Q 005877 141 ERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGA 218 (672)
Q Consensus 141 ~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 218 (672)
.++|..|+..|..|++ +++...+.+-+..++..++++.|...+++.++..+... ......+.
T Consensus 62 ~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~----------------k~~~r~~~ 125 (486)
T KOG0550|consen 62 QKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFS----------------KGQLREGQ 125 (486)
T ss_pred HhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCcc----------------ccccchhh
Confidence 6677777777777776 46666777777777777777777666665544221100 00111222
Q ss_pred hhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHcCC
Q 005877 219 LRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE-----PQSMEFLGEIYARGA 293 (672)
Q Consensus 219 ~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~-----~~a~~~Lg~~y~~g~ 293 (672)
.+...++..+|.+.++ +..++ ....|+..+++.+.... ..+...-+.++..
T Consensus 126 c~~a~~~~i~A~~~~~------~~~~~----------------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~-- 181 (486)
T KOG0550|consen 126 CHLALSDLIEAEEKLK------SKQAY----------------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAF-- 181 (486)
T ss_pred hhhhhHHHHHHHHHhh------hhhhh----------------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhh--
Confidence 2233333333333332 11110 12223333333333221 2334444555555
Q ss_pred CCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCH--------------HHHHH
Q 005877 294 GVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEA--------------GGHYN 357 (672)
Q Consensus 294 g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~--------------~a~~~ 357 (672)
.+++..|...--..++.+ +.++++.=|.++.. ..+.++|+..|++++..+-. ..+-.
T Consensus 182 --~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy-----~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 182 --LGDYDEAQSEAIDILKLDATNAEALYVRGLCLYY-----NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred --cccchhHHHHHHHHHhcccchhHHHHhccccccc-----ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHh
Confidence 677777766655555443 56666666665554 34777888888888766411 11223
Q ss_pred HHHHHHcCCCchhcHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHH
Q 005877 358 LGVMYYKGIGVKRDVKLACKYFLVAANAGH------QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSR 429 (672)
Q Consensus 358 Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~------~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~ 429 (672)
-|....+ .|++.+|.+.|..|+..++ ...+.+.+.+... .++.++|+.-.+.+++.++ ..++..
T Consensus 255 ~gN~~fk----~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~r----Lgrl~eaisdc~~Al~iD~syikall~ 326 (486)
T KOG0550|consen 255 RGNDAFK----NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIR----LGRLREAISDCNEALKIDSSYIKALLR 326 (486)
T ss_pred hhhhHhh----ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcc----cCCchhhhhhhhhhhhcCHHHHHHHHH
Confidence 3444455 7899999999999987542 3455666666665 8899999999999998885 467888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877 430 WALESYLKGDVGKAFLLYSRMAELG 454 (672)
Q Consensus 430 lg~~~~~~g~~~~A~~~~~~a~~~g 454 (672)
.|.++...+++++|+..|+++.+..
T Consensus 327 ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 327 RANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999997764
No 98
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=0.00011 Score=77.20 Aligned_cols=410 Identities=14% Similarity=0.052 Sum_probs=229.8
Q ss_pred CCChhhHHHHHHHHHHHHh--CCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhccCCHH
Q 005877 102 NGDVRVMEEATSEVESAAM--EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAA--EGGNIQSKMAVAYTYLRQDMHD 177 (672)
Q Consensus 102 ~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~--~~~~~~a~~~Lg~~y~~~~~~~ 177 (672)
.+..++|++|++...+... ++++++..--=.+... ...|++|+..-++-- ..++.- .+.-++|.++.+..+
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq----~~ky~~ALk~ikk~~~~~~~~~~-~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQ----LDKYEDALKLIKKNGALLVINSF-FFEKAYCEYRLNKLD 96 (652)
T ss_pred hccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhh----hhHHHHHHHHHHhcchhhhcchh-hHHHHHHHHHcccHH
Confidence 4557899999999999544 4667776543333333 557888885554421 222222 278899999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCC--HHHHHHHHHHHHhc
Q 005877 178 KAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGN--AGAMYKIGLFYYFG 255 (672)
Q Consensus 178 ~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~--~~a~~~Lg~~y~~~ 255 (672)
+|++.++-+ + +....+..-.+.+.+++|+|++|+..|+..++.+. .+.......+-..
T Consensus 97 ealk~~~~~-~------------------~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~- 156 (652)
T KOG2376|consen 97 EALKTLKGL-D------------------RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA- 156 (652)
T ss_pred HHHHHHhcc-c------------------ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-
Confidence 999999822 1 11112333467888999999999999999987753 3332222221110
Q ss_pred CCCcccCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-------C----------CH
Q 005877 256 LRGLRRDRTKALMWFSKAAD---KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-------Q----------LY 315 (672)
Q Consensus 256 ~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~----------~~ 315 (672)
- .....+. +.+. .+.-...|+.+-++.. .++|.+|++.+++|... + ..
T Consensus 157 ------a-~l~~~~~-q~v~~v~e~syel~yN~Ac~~i~----~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~ 224 (652)
T KOG2376|consen 157 ------A-ALQVQLL-QSVPEVPEDSYELLYNTACILIE----NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELN 224 (652)
T ss_pred ------H-hhhHHHH-HhccCCCcchHHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHH
Confidence 0 0011122 2222 2456788999999998 99999999999999421 1 11
Q ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCH------HHHHHHHHHHHcCCCch---------hcHHHHHHHHH
Q 005877 316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEA------GGHYNLGVMYYKGIGVK---------RDVKLACKYFL 380 (672)
Q Consensus 316 ~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~------~a~~~Lg~~y~~g~g~~---------~~~~~A~~~~~ 380 (672)
.....|+.++.. .|+..+|...|...+..+.+ .+.+||-.+-....-.. ....-+..+..
T Consensus 225 ~IrvQlayVlQ~-----~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~ 299 (652)
T KOG2376|consen 225 PIRVQLAYVLQL-----QGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLS 299 (652)
T ss_pred HHHHHHHHHHHH-----hcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHH
Confidence 235567777775 67999999999998876432 23444443321100000 01111111222
Q ss_pred HHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCHH-
Q 005877 381 VAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSS--LSRWALESYLKGDVGKAFLLYSRMAELGYEV- 457 (672)
Q Consensus 381 ~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a--~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~- 457 (672)
+.........+.|.+.+-+. .+..+.+.+.....-...|... .............+.+|..++....+.....
T Consensus 300 ~Ls~~qk~~i~~N~~lL~l~----tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s 375 (652)
T KOG2376|consen 300 KLSKKQKQAIYRNNALLALF----TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKS 375 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchh
Confidence 22222223334444444332 2233333332222222222211 1122222333336888888888887765333
Q ss_pred --HHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHH--------HHHhCCCHHHHHHHHHHHHhCCCCC----CC
Q 005877 458 --AQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWW--------QASEQGNEHAALLIGDAYYYGRGTQ----RD 523 (672)
Q Consensus 458 --a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~--------~a~~~~~~~a~~~lG~~y~~g~g~~----~d 523 (672)
...-.+.+... .++++.|++.+. ...+..+..+.+..+..++++.+.. .-
T Consensus 376 ~~v~L~~aQl~is----------------~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~v 439 (652)
T KOG2376|consen 376 KVVLLLRAQLKIS----------------QGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAV 439 (652)
T ss_pred HHHHHHHHHHHHh----------------cCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHH
Confidence 33333333333 678888998888 4445555555564444444433211 12
Q ss_pred HHHHHHHHHHHHhcC-CHHHH-HHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877 524 YERAAEAYMHARSQS-NAQAM-FNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA 577 (672)
Q Consensus 524 ~~~A~~~~~~A~~~~-~~~a~-~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 577 (672)
+++|+.||+...... .-..+ ..++..... -|+.++|...+++-++.+|..
T Consensus 440 l~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr----~G~~~ea~s~leel~k~n~~d 491 (652)
T KOG2376|consen 440 LDSAIKWWRKQQTGSIALLSLMREAAEFKLR----HGNEEEASSLLEELVKFNPND 491 (652)
T ss_pred HHHHHHHHHHhcccchHHHhHHHHHhHHHHh----cCchHHHHHHHHHHHHhCCch
Confidence 567777777764322 11222 223333333 389999999999999987654
No 99
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.80 E-value=2.6e-07 Score=88.00 Aligned_cols=120 Identities=13% Similarity=0.136 Sum_probs=86.3
Q ss_pred cCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCC
Q 005877 405 KKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFC 482 (672)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~ 482 (672)
.++.++++..++++++.+| ..++..+|.++...|++++|+..|+++++.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l----------------------------- 102 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL----------------------------- 102 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----------------------------
Confidence 4556666666666666553 445666666666666666666666665543
Q ss_pred CchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCC
Q 005877 483 TDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRD--YERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPL 558 (672)
Q Consensus 483 ~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d--~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~ 558 (672)
.+++++.++.+|.+++. ..++ +++|.+.++++++. +++.++++||..+.. .|
T Consensus 103 -----------------~P~~~~~~~~lA~aL~~---~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~----~g 158 (198)
T PRK10370 103 -----------------RGENAELYAALATVLYY---QAGQHMTPQTREMIDKALALDANEVTALMLLASDAFM----QA 158 (198)
T ss_pred -----------------CCCCHHHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH----cC
Confidence 35567777778876421 3344 68999999999774 789999999999987 89
Q ss_pred CHHHHHHHHHHHHhcCCCC
Q 005877 559 DLHLAKRYYDQALEVDPAA 577 (672)
Q Consensus 559 d~~~A~~~~~~A~~~~~~~ 577 (672)
|+++|+.+|+++++++|..
T Consensus 159 ~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 159 DYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred CHHHHHHHHHHHHhhCCCC
Confidence 9999999999999997664
No 100
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.80 E-value=1.9e-07 Score=84.10 Aligned_cols=117 Identities=13% Similarity=0.039 Sum_probs=67.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHH
Q 005877 341 EYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLV 418 (672)
Q Consensus 341 ~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a 418 (672)
.+|+++++.+ |...+.+|..+.. .|++++|+.+|++++.. .+..+++.+|.++.. .+++++|+..|+++
T Consensus 14 ~~~~~al~~~-p~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~y~~A 84 (144)
T PRK15359 14 DILKQLLSVD-PETVYASGYASWQ----EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM----LKEYTTAINFYGHA 84 (144)
T ss_pred HHHHHHHHcC-HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----HhhHHHHHHHHHHH
Confidence 4555555544 2234455666655 56666666666666553 345666666666655 56666666666666
Q ss_pred HHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 005877 419 AERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWIL 466 (672)
Q Consensus 419 ~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l 466 (672)
++..| +.+++++|.++...|++++|+..|+++++. +++....+.+.+.
T Consensus 85 l~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 85 LMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 65553 445666666666666666666666666443 3555555555443
No 101
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.77 E-value=1.8e-05 Score=85.84 Aligned_cols=223 Identities=17% Similarity=0.103 Sum_probs=113.1
Q ss_pred hhHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcC
Q 005877 216 KGALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG-EPQSMEFLGEIYARG 292 (672)
Q Consensus 216 ~~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g 292 (672)
.+.++.++|+.++|...|+..++. .+...+..|..+..........+.+.-.+.|++....- ...+...+...+..|
T Consensus 44 rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g 123 (517)
T PF12569_consen 44 RAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEG 123 (517)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCH
Confidence 444455555555555555554444 24444444444441111001124555666666554321 112222333333331
Q ss_pred CCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh---C------------CCH----H
Q 005877 293 AGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAAD---N------------EEA----G 353 (672)
Q Consensus 293 ~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~---~------------~~~----~ 353 (672)
..--+.+..|+...+..|.|.....|-.+|.. .....-..+.+..-.. . ..| -
T Consensus 124 ---~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d-----~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw 195 (517)
T PF12569_consen 124 ---DEFKERLDEYLRPQLRKGVPSLFSNLKPLYKD-----PEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLW 195 (517)
T ss_pred ---HHHHHHHHHHHHHHHhcCCchHHHHHHHHHcC-----hhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHH
Confidence 12234556667777777777777777777742 1011111111111110 0 011 2
Q ss_pred HHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHH--
Q 005877 354 GHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSR-- 429 (672)
Q Consensus 354 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~-- 429 (672)
+++.|++.|.. .|++++|+++..+|++.. .++.+..-|.++.+ .|++.+|..+++.|-+.+..+-+.+
T Consensus 196 ~~~~lAqhyd~----~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh----~G~~~~Aa~~~~~Ar~LD~~DRyiNsK 267 (517)
T PF12569_consen 196 TLYFLAQHYDY----LGDYEKALEYIDKAIEHTPTLVELYMTKARILKH----AGDLKEAAEAMDEARELDLADRYINSK 267 (517)
T ss_pred HHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhCChhhHHHHHH
Confidence 34566666666 667777777777776643 45666666777766 6777777777777766665543332
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877 430 WALESYLKGDVGKAFLLYSRMAELG 454 (672)
Q Consensus 430 lg~~~~~~g~~~~A~~~~~~a~~~g 454 (672)
.+..+.+.|+.++|..........+
T Consensus 268 ~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 268 CAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 3444556666666666666554443
No 102
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=3.4e-05 Score=75.90 Aligned_cols=401 Identities=13% Similarity=0.026 Sum_probs=247.0
Q ss_pred ccccCCCCCCcccccCCCCCCCcCc-hHH--HHHHHHHHHhcCCChhhHHHHHHHHHHHHhCCC--hHHHHHHHHHhhcC
Q 005877 63 TEENLDPGSWSPVFEPSIDPGAING-SYY--ITISKMMSAVTNGDVRVMEEATSEVESAAMEGD--PHARSVLGFLYGMG 137 (672)
Q Consensus 63 ~~~~~~~~~a~~~~~~~~~~~~~~a-~~~--~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~y~~G 137 (672)
.....||..|+..++...+.+..+- ... +|.+++ ..|||++|+..|+-..+.++ .+...+|+-++..
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~f-------hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~Fy- 103 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYF-------HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFY- 103 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHH-------hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHH-
Confidence 3446799999999998887765443 333 333433 38999999999999776644 5667889999988
Q ss_pred CcccCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhh
Q 005877 138 MMRERNKGKAFLYHHFAAE-GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENK 216 (672)
Q Consensus 138 ~g~~~d~~~A~~~~~~A~~-~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 216 (672)
.+.|.+|...-.++.+ +=...-++.|+..+ +|-++-. .|..-+... .+-...+
T Consensus 104 ---Lg~Y~eA~~~~~ka~k~pL~~RLlfhlahkl---ndEk~~~-~fh~~LqD~-------------------~EdqLSL 157 (557)
T KOG3785|consen 104 ---LGQYIEAKSIAEKAPKTPLCIRLLFHLAHKL---NDEKRIL-TFHSSLQDT-------------------LEDQLSL 157 (557)
T ss_pred ---HHHHHHHHHHHhhCCCChHHHHHHHHHHHHh---CcHHHHH-HHHHHHhhh-------------------HHHHHhH
Confidence 8899999888777655 22335555555544 4433333 333222210 0112347
Q ss_pred hHhhhccCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcC
Q 005877 217 GALRKSRGEDDEAFQILEYQAQKG--NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARG 292 (672)
Q Consensus 217 ~~~~~~~g~~~~Ai~~~~~aa~~~--~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g 292 (672)
+.+...+-.|++||+.|++....+ .......++.+|+... =++-+.+.+.-.+.+ +.+-|....+-...+
T Consensus 158 AsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlD-----Yydvsqevl~vYL~q~pdStiA~NLkacn~fR- 231 (557)
T KOG3785|consen 158 ASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLD-----YYDVSQEVLKVYLRQFPDSTIAKNLKACNLFR- 231 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcc-----hhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhh-
Confidence 778888889999999999975442 4556678899998872 345555555555553 556666655555444
Q ss_pred CCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcH
Q 005877 293 AGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDV 372 (672)
Q Consensus 293 ~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~ 372 (672)
.=+-..|..-.+..++.++.+ +-....+..+..-+-+ +-+.|++.+--.+ .-.|+|..||...|++ ++|.
T Consensus 232 ---l~ngr~ae~E~k~ladN~~~~-~~f~~~l~rHNLVvFr-ngEgALqVLP~L~-~~IPEARlNL~iYyL~----q~dV 301 (557)
T KOG3785|consen 232 ---LINGRTAEDEKKELADNIDQE-YPFIEYLCRHNLVVFR-NGEGALQVLPSLM-KHIPEARLNLIIYYLN----QNDV 301 (557)
T ss_pred ---hhccchhHHHHHHHHhccccc-chhHHHHHHcCeEEEe-CCccHHHhchHHH-hhChHhhhhheeeecc----cccH
Confidence 223334444445444443211 2223334444333323 5556666554333 3479999999999999 9999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHc---CCCccCCHHHHHHHHHHHHHcC----ChhHHHHHHHHHHhcCCHHHHHH
Q 005877 373 KLACKYFLVAANAGHQKAFYQLAKMFHT---GVGLKKNLHMATALYKLVAERG----PWSSLSRWALESYLKGDVGKAFL 445 (672)
Q Consensus 373 ~~A~~~~~~A~~~~~~~a~~~L~~~y~~---g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~g~~~~A~~ 445 (672)
++|+...+. +++..|.-+.--|.++.. ..|.....+-|...|+.+-+.+ ....--.++..++...++++-+.
T Consensus 302 qeA~~L~Kd-l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~ 380 (557)
T KOG3785|consen 302 QEAISLCKD-LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLT 380 (557)
T ss_pred HHHHHHHhh-cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 999987765 333344333333333221 1244556677777777664332 22233445555666667777776
Q ss_pred HHHHHH--HcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC-HHHH--HHHHHHHHhCCCC
Q 005877 446 LYSRMA--ELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN-EHAA--LLIGDAYYYGRGT 520 (672)
Q Consensus 446 ~~~~a~--~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~a~--~~lG~~y~~g~g~ 520 (672)
++...- =.++..-..|+|....- .+++.+|.+++-+...++. .+.. ..|+.||. .
T Consensus 381 YlnSi~sYF~NdD~Fn~N~AQAk~a----------------tgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi----~ 440 (557)
T KOG3785|consen 381 YLNSIESYFTNDDDFNLNLAQAKLA----------------TGNYVEAEELFIRISGPEIKNKILYKSMLARCYI----R 440 (557)
T ss_pred HHHHHHHHhcCcchhhhHHHHHHHH----------------hcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHH----h
Confidence 665432 12566667788877665 5678889888887655542 2222 38999999 7
Q ss_pred CCCHHHHHHHHHHH
Q 005877 521 QRDYERAAEAYMHA 534 (672)
Q Consensus 521 ~~d~~~A~~~~~~A 534 (672)
.+.++.|-..+-+-
T Consensus 441 nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 441 NKKPQLAWDMMLKT 454 (557)
T ss_pred cCCchHHHHHHHhc
Confidence 88888887776553
No 103
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=3.5e-06 Score=84.54 Aligned_cols=254 Identities=15% Similarity=0.017 Sum_probs=187.6
Q ss_pred hhhHHHHHHHHHHHHhC--CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHH
Q 005877 105 VRVMEEATSEVESAAME--GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAV 180 (672)
Q Consensus 105 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~ 180 (672)
..+|.+|+..|..|++. .++..+..-+..|.. .+++++|..-.++.++ +|....+...+.++...++..+|-
T Consensus 62 ~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~----~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 62 QKTYGNALKNYTFAIDMCPDNASYYSNRAATLMM----LGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred HhhHHHHHHHHHHHHHhCccchhhhchhHHHHHH----HHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHH
Confidence 57889999999998765 677788888888877 7889999998888876 578889999999999988888887
Q ss_pred HHHHHHH-----HHHHhh---hhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHH
Q 005877 181 KLYAELA-----EIAVNS---FLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGL 250 (672)
Q Consensus 181 ~~y~~a~-----~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~ 250 (672)
..|+..- ...+.. .......|..- .....+..++...+++++|+..--...+. .+.++.+.-|.
T Consensus 138 ~~~~~~~~~~~anal~~~~~~~~s~s~~pac~------~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~ 211 (486)
T KOG0550|consen 138 EKLKSKQAYKAANALPTLEKLAPSHSREPACF------KAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGL 211 (486)
T ss_pred HHhhhhhhhHHhhhhhhhhcccccccCCchhh------HHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccc
Confidence 6666211 100000 00000001001 11223566777889999888776665444 58999999999
Q ss_pred HHHhcCCCcccCHHHHHHHHHHHHHcCCH--------------HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC---
Q 005877 251 FYYFGLRGLRRDRTKALMWFSKAADKGEP--------------QSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--- 313 (672)
Q Consensus 251 ~y~~~~~~~~~~~~~A~~~~~~a~~~~~~--------------~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 313 (672)
+++..+ +.++|+..|++++..+-. ...-.-|....+ .|++.+|.+.|..++..+
T Consensus 212 ~~yy~~-----~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk----~G~y~~A~E~Yteal~idP~n 282 (486)
T KOG0550|consen 212 CLYYND-----NADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK----NGNYRKAYECYTEALNIDPSN 282 (486)
T ss_pred cccccc-----chHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh----ccchhHHHHHHHHhhcCCccc
Confidence 998884 999999999999985421 222333444455 799999999999999753
Q ss_pred ---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC
Q 005877 314 ---LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG 386 (672)
Q Consensus 314 ---~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 386 (672)
++..+.+.+.+... .|+..+|+.--..++..+ ...++..-|.||+. .+++++|++.|+++.+..
T Consensus 283 ~~~naklY~nra~v~~r-----Lgrl~eaisdc~~Al~iD~syikall~ra~c~l~----le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 283 KKTNAKLYGNRALVNIR-----LGRLREAISDCNEALKIDSSYIKALLRRANCHLA----LEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred cchhHHHHHHhHhhhcc-----cCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhc
Confidence 44456666666654 568999999999999886 57788899999999 999999999999998854
No 104
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.74 E-value=1.8e-06 Score=97.73 Aligned_cols=213 Identities=15% Similarity=0.077 Sum_probs=158.9
Q ss_pred hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhcc
Q 005877 120 MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLIS 197 (672)
Q Consensus 120 ~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~ 197 (672)
++++..++..|..+|.. .+++++|+..++.+.+ ++.+..++.+|.++.+.+++.++.-. .+++..
T Consensus 27 ~p~n~~a~~~Li~~~~~----~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~------- 93 (906)
T PRK14720 27 SLSKFKELDDLIDAYKS----ENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSF------- 93 (906)
T ss_pred CcchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhc-------
Confidence 45788999999999977 8899999999998776 68889999999999999888777655 443321
Q ss_pred CCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHH-HHHc-CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH
Q 005877 198 KDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEY-QAQK-GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD 275 (672)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~-aa~~-~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~ 275 (672)
....++ .+++++-. ..+- .+..|++.||.+|-.. ++.++|+..|+++++
T Consensus 94 -----------------------~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~-----g~~~ka~~~yer~L~ 144 (906)
T PRK14720 94 -----------------------SQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKL-----NENKKLKGVWERLVK 144 (906)
T ss_pred -----------------------ccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHc-----CChHHHHHHHHHHHh
Confidence 122233 44444443 3333 3667999999999877 499999999999987
Q ss_pred --cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC---
Q 005877 276 --KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--- 350 (672)
Q Consensus 276 --~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--- 350 (672)
+.++.++.++|..|.. . |.++|+.++.+|++. +.. .+.+.++.+++++.++.+
T Consensus 145 ~D~~n~~aLNn~AY~~ae----~-dL~KA~~m~~KAV~~------------~i~-----~kq~~~~~e~W~k~~~~~~~d 202 (906)
T PRK14720 145 ADRDNPEIVKKLATSYEE----E-DKEKAITYLKKAIYR------------FIK-----KKQYVGIEEIWSKLVHYNSDD 202 (906)
T ss_pred cCcccHHHHHHHHHHHHH----h-hHHHHHHHHHHHHHH------------HHh-----hhcchHHHHHHHHHHhcCccc
Confidence 4789999999999998 7 999999999999875 211 124555555555555432
Q ss_pred -------------------CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHc
Q 005877 351 -------------------EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHT 400 (672)
Q Consensus 351 -------------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L~~~y~~ 400 (672)
..+.+.-|=..|.. .+++++++.+++++++.. +..+.+.|+.+|..
T Consensus 203 ~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~----~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 203 FDFFLRIERKVLGHREFTRLVGLLEDLYEPYKA----LEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred chHHHHHHHHHHhhhccchhHHHHHHHHHHHhh----hhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 22333344466777 789999999999998854 66788888888764
No 105
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.73 E-value=6.2e-07 Score=95.88 Aligned_cols=210 Identities=20% Similarity=0.239 Sum_probs=174.8
Q ss_pred hhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHc
Q 005877 213 EENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD-KGEPQSMEFLGEIYAR 291 (672)
Q Consensus 213 ~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~Lg~~y~~ 291 (672)
...++.++...|-...|+.++++. ...-....+|... ++..+|.....+-++ +.++..+-.||++..+
T Consensus 401 q~~laell~slGitksAl~I~Erl------emw~~vi~CY~~l-----g~~~kaeei~~q~lek~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERL------EMWDPVILCYLLL-----GQHGKAEEINRQELEKDPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhH------HHHHHHHHHHHHh-----cccchHHHHHHHHhcCCCcchhHHHhhhhccC
Confidence 345788889999999999999973 4445555666665 388899998888888 6789999999999988
Q ss_pred CCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCch
Q 005877 292 GAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVK 369 (672)
Q Consensus 292 g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~ 369 (672)
+.-+++|.++.+.-- ..|+..+|..... .++++++.+.|+.+.+++ ....+|.+|.+..+ .
T Consensus 470 ----~s~yEkawElsn~~s----arA~r~~~~~~~~-----~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALq----l 532 (777)
T KOG1128|consen 470 ----PSLYEKAWELSNYIS----ARAQRSLALLILS-----NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQ----L 532 (777)
T ss_pred ----hHHHHHHHHHhhhhh----HHHHHhhcccccc-----chhHHHHHHHHHHHhhcCccchhHHHhccHHHHH----H
Confidence 777888888776543 3366667765543 459999999999998875 78999999999999 9
Q ss_pred hcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcCCHHHHHH
Q 005877 370 RDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFL 445 (672)
Q Consensus 370 ~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~g~~~~A~~ 445 (672)
++++.|.+.|...+. +++.++++||+..|.. .++-.+|...+++|++-+ +|...-+.-.+....|.+++|++
T Consensus 533 ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~----~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~ 608 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR----LKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIK 608 (777)
T ss_pred hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH----HhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHH
Confidence 999999999999875 6799999999999997 899999999999998766 77777777777888999999999
Q ss_pred HHHHHHHcC
Q 005877 446 LYSRMAELG 454 (672)
Q Consensus 446 ~~~~a~~~g 454 (672)
.|.+.+++.
T Consensus 609 A~~rll~~~ 617 (777)
T KOG1128|consen 609 AYHRLLDLR 617 (777)
T ss_pred HHHHHHHhh
Confidence 999987663
No 106
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=5.3e-06 Score=79.64 Aligned_cols=295 Identities=14% Similarity=0.074 Sum_probs=190.3
Q ss_pred hhhHHHHHHHHHHHHh--CCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCHHHHH
Q 005877 105 VRVMEEATSEVESAAM--EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAV 180 (672)
Q Consensus 105 ~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~~~~~~~A~ 180 (672)
..+|..|++.+..-.+ +.+-.+...||.+|.. .+++..|..+|++.... ......+.-+....+.+.+..|+
T Consensus 23 d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~----~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSPRSRAGLSLLGYCYYR----LQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 5678888888887443 3467788899999988 88999999999987663 44455555566677778888887
Q ss_pred HHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 005877 181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLR 260 (672)
Q Consensus 181 ~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~ 260 (672)
.....+.+... +.+....-.+.+..+.+++..+..+.++....++++...+.|-+.+..
T Consensus 99 rV~~~~~D~~~----------------L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyke----- 157 (459)
T KOG4340|consen 99 RVAFLLLDNPA----------------LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKE----- 157 (459)
T ss_pred HHHHHhcCCHH----------------HHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeecc-----
Confidence 77665543210 000111124566777888888888888887778888888888888777
Q ss_pred cCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCC-CcC
Q 005877 261 RDRTKALMWFSKAADKG--EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ---LYSAYNGIGYLYVKGYGV-EKK 334 (672)
Q Consensus 261 ~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~-~~~ 334 (672)
++++.|++-|+.|.+-+ +|...++++.+..+ .+++..|+++....++.| +|+ .++|+.-. |..+ ..|
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniALaHy~----~~qyasALk~iSEIieRG~r~HPE--lgIGm~te-giDvrsvg 230 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLALAHYS----SRQYASALKHISEIIERGIRQHPE--LGIGMTTE-GIDVRSVG 230 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh----hhhHHHHHHHHHHHHHhhhhcCCc--cCccceec-cCchhccc
Confidence 48999999999888753 67777888888887 888999998888888765 222 23333221 1000 001
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHH----HHcCCHHHHHHHHHHHHcCCCccCCHHH
Q 005877 335 NYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVA----ANAGHQKAFYQLAKMFHTGVGLKKNLHM 410 (672)
Q Consensus 335 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A----~~~~~~~a~~~L~~~y~~g~g~~~~~~~ 410 (672)
|. +.. .+.+..++.+.-+-++.+ .+|++.|.+.+... -+.-+|....|++.+-.+ +++..
T Consensus 231 Nt---~~l----h~Sal~eAfNLKaAIeyq----~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~-----~~p~~ 294 (459)
T KOG4340|consen 231 NT---LVL----HQSALVEAFNLKAAIEYQ----LRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMD-----ARPTE 294 (459)
T ss_pred ch---HHH----HHHHHHHHhhhhhhhhhh----cccHHHHHHHhhcCCCcccccCCchhhhHHHHhccc-----CCccc
Confidence 11 111 111223444444556666 77887776655432 112267778888877654 44444
Q ss_pred HHHHHHHHHHcC--ChhHHHHHHHHHHhcCCHHHHHHHH
Q 005877 411 ATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLY 447 (672)
Q Consensus 411 A~~~~~~a~~~~--~~~a~~~lg~~~~~~g~~~~A~~~~ 447 (672)
..+-++-.++.. |++...++-.+|.+..=++-|...+
T Consensus 295 g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 295 GFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVL 333 (459)
T ss_pred cHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHH
Confidence 444455555555 5677888888888766555555544
No 107
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.72 E-value=4.9e-07 Score=91.64 Aligned_cols=202 Identities=23% Similarity=0.260 Sum_probs=131.6
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHc----CC----HHHH
Q 005877 174 DMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK----GN----AGAM 245 (672)
Q Consensus 174 ~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~----~~----~~a~ 245 (672)
.++++|...|+++.. .+...+++++|.+.|.++++. ++ ..++
T Consensus 29 ~~~e~Aa~~y~~Aa~------------------------------~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~ 78 (282)
T PF14938_consen 29 PDYEEAADLYEKAAN------------------------------CFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAY 78 (282)
T ss_dssp HHHHHHHHHHHHHHH------------------------------HHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHH------------------------------HHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 478889999988754 455678889999999987543 32 3556
Q ss_pred HHHHHHHHhcCCCcccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCc-CCHHHHHHHHHHHHHc----
Q 005877 246 YKIGLFYYFGLRGLRRDRTKALMWFSKAADK----GE----PQSMEFLGEIYARGAGVE-RNYTKALEWLTHAARQ---- 312 (672)
Q Consensus 246 ~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~-~~~~~A~~~~~~a~~~---- 312 (672)
...+.+|... ++++|+++|++|++. |. +..+..+|.+|.. . +++++|+++|++|++.
T Consensus 79 ~~Aa~~~k~~------~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~----~~~d~e~Ai~~Y~~A~~~y~~e 148 (282)
T PF14938_consen 79 EEAANCYKKG------DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEE----QLGDYEKAIEYYQKAAELYEQE 148 (282)
T ss_dssp HHHHHHHHHT------THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC----TT--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhh------CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHC
Confidence 6677777655 888999999998863 44 4677888888887 6 7899999999988863
Q ss_pred CC----HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--------CH-HHHHHHHHHHHcCCCchhcHHHHHHHH
Q 005877 313 QL----YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--------EA-GGHYNLGVMYYKGIGVKRDVKLACKYF 379 (672)
Q Consensus 313 ~~----~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--------~~-~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 379 (672)
+. ..+...++.++.. .++|++|++.|++.+... .+ ..++..+.+++. .+|...|.+.|
T Consensus 149 ~~~~~a~~~~~~~A~l~~~-----l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~----~~D~v~A~~~~ 219 (282)
T PF14938_consen 149 GSPHSAAECLLKAADLYAR-----LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA----MGDYVAARKAL 219 (282)
T ss_dssp T-HHHHHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH----TT-HHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH----cCCHHHHHHHH
Confidence 22 3346677777775 458888888888887641 11 234566777777 77888888888
Q ss_pred HHHHHcC-----CH--HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhH
Q 005877 380 LVAANAG-----HQ--KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSS 426 (672)
Q Consensus 380 ~~A~~~~-----~~--~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a 426 (672)
++..+.. .. .....|-..+..| -...+++|+.-|.+..+.++|..
T Consensus 220 ~~~~~~~~~F~~s~E~~~~~~l~~A~~~~--D~e~f~~av~~~d~~~~ld~w~~ 271 (282)
T PF14938_consen 220 ERYCSQDPSFASSREYKFLEDLLEAYEEG--DVEAFTEAVAEYDSISRLDNWKT 271 (282)
T ss_dssp HHHGTTSTTSTTSHHHHHHHHHHHHHHTT---CCCHHHHCHHHTTSS---HHHH
T ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHHHhC--CHHHHHHHHHHHcccCccHHHHH
Confidence 8876432 22 2333444445443 45667777777776666666554
No 108
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.71 E-value=3.7e-07 Score=86.96 Aligned_cols=116 Identities=15% Similarity=0.163 Sum_probs=96.0
Q ss_pred hhhHHHHHHHHHH--HHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHH-hccCC--HH
Q 005877 105 VRVMEEATSEVES--AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTY-LRQDM--HD 177 (672)
Q Consensus 105 ~~~~~~A~~~~~~--a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y-~~~~~--~~ 177 (672)
.++.++++..+++ ..+++++++++.||.+|.. .+++++|+..|+++.. ++++..+..+|.++ ...|+ ++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~----~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLW----RNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 4566788888888 4557899999999999998 9999999999999987 68899999999964 66666 58
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005877 178 KAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLR 257 (672)
Q Consensus 178 ~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~ 257 (672)
+|+..++++++. +++++.+++.||..++..
T Consensus 128 ~A~~~l~~al~~------------------------------------------------dP~~~~al~~LA~~~~~~-- 157 (198)
T PRK10370 128 QTREMIDKALAL------------------------------------------------DANEVTALMLLASDAFMQ-- 157 (198)
T ss_pred HHHHHHHHHHHh------------------------------------------------CCCChhHHHHHHHHHHHc--
Confidence 899888888763 456788888888888887
Q ss_pred CcccCHHHHHHHHHHHHHcC
Q 005877 258 GLRRDRTKALMWFSKAADKG 277 (672)
Q Consensus 258 ~~~~~~~~A~~~~~~a~~~~ 277 (672)
+++++|+.+++++++..
T Consensus 158 ---g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 158 ---ADYAQAIELWQKVLDLN 174 (198)
T ss_pred ---CCHHHHHHHHHHHHhhC
Confidence 48889999888888753
No 109
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.69 E-value=3.2e-06 Score=95.66 Aligned_cols=230 Identities=11% Similarity=-0.015 Sum_probs=142.3
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCH
Q 005877 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLY 315 (672)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~ 315 (672)
++++..++..|...|. ..+++++|++..+.+++ ++....++.+|.++.. .+++..+.-.
T Consensus 27 ~p~n~~a~~~Li~~~~-----~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q----~~~~~~~~lv---------- 87 (906)
T PRK14720 27 SLSKFKELDDLIDAYK-----SENLTDEAKDICEEHLKEHKKSISALYISGILSLS----RRPLNDSNLL---------- 87 (906)
T ss_pred CcchHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHh----hcchhhhhhh----------
Confidence 4456677777777652 34677777777776665 3566777777777666 4443322221
Q ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHH-HHHhC-CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHH
Q 005877 316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFE-KAADN-EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAF 391 (672)
Q Consensus 316 ~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~-~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~ 391 (672)
.++.+... ..++ .+++++- ...+. ++..|++.||.||.+ .++.++|...|+++++. .++.++
T Consensus 88 ----~~l~~~~~-----~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk----~g~~~ka~~~yer~L~~D~~n~~aL 153 (906)
T PRK14720 88 ----NLIDSFSQ-----NLKW-AIVEHICDKILLYGENKLALRTLAEAYAK----LNENKKLKGVWERLVKADRDNPEIV 153 (906)
T ss_pred ----hhhhhccc-----ccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCcccHHHH
Confidence 22222221 2244 4444444 33343 355688899999988 88999999999998874 478888
Q ss_pred HHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005877 392 YQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGE 471 (672)
Q Consensus 392 ~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~ 471 (672)
+++|..|.. . |.++|+.++++|++. +...+++.++..++++.++........
T Consensus 154 Nn~AY~~ae----~-dL~KA~~m~~KAV~~------------~i~~kq~~~~~e~W~k~~~~~~~d~d~----------- 205 (906)
T PRK14720 154 KKLATSYEE----E-DKEKAITYLKKAIYR------------FIKKKQYVGIEEIWSKLVHYNSDDFDF----------- 205 (906)
T ss_pred HHHHHHHHH----h-hHHHHHHHHHHHHHH------------HHhhhcchHHHHHHHHHHhcCcccchH-----------
Confidence 999988887 5 899999999988875 555667888888888877664332211
Q ss_pred CCcccCCCCCCCchHhHHHHHHHHHHHH---h-CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHH
Q 005877 472 GSMCMGESGFCTDAERHQCAHSLWWQAS---E-QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFN 545 (672)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~---~-~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~ 545 (672)
=..+.++-. . ..-.+.+.-|=.+|. ..+|+++++..++.+++. .|..+.+.
T Consensus 206 -------------------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~----~~~~~~~~i~iLK~iL~~~~~n~~a~~~ 262 (906)
T PRK14720 206 -------------------FLRIERKVLGHREFTRLVGLLEDLYEPYK----ALEDWDEVIYILKKILEHDNKNNKAREE 262 (906)
T ss_pred -------------------HHHHHHHHHhhhccchhHHHHHHHHHHHh----hhhhhhHHHHHHHHHHhcCCcchhhHHH
Confidence 000111100 0 011333444445555 567777777777777663 45666777
Q ss_pred HHHHHH
Q 005877 546 LGYMHE 551 (672)
Q Consensus 546 Lg~~y~ 551 (672)
|..+|.
T Consensus 263 l~~~y~ 268 (906)
T PRK14720 263 LIRFYK 268 (906)
T ss_pred HHHHHH
Confidence 777765
No 110
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=3.2e-05 Score=74.45 Aligned_cols=283 Identities=16% Similarity=0.126 Sum_probs=167.2
Q ss_pred ccCCCCCCcccccCCCC--CCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhCCChHHHHHH--HH-HhhcCCc
Q 005877 65 ENLDPGSWSPVFEPSID--PGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVL--GF-LYGMGMM 139 (672)
Q Consensus 65 ~~~~~~~a~~~~~~~~~--~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~L--g~-~y~~G~g 139 (672)
....|..++.++.-... +.+..++..+|.+++. ..+|..|...|++....-...++|.+ +. +|.
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~-------~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~---- 90 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYR-------LQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK---- 90 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH----
Confidence 34466666666655533 4345567778887774 88999999999997766544555443 22 333
Q ss_pred ccCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhh
Q 005877 140 RERNKGKAFLYHHFAAEGGN--IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKG 217 (672)
Q Consensus 140 ~~~d~~~A~~~~~~A~~~~~--~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 217 (672)
..-+..|+.......+..+ ....-.-+.+....+|+..+....++.... -......+.|
T Consensus 91 -A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e------------------n~Ad~~in~g 151 (459)
T KOG4340|consen 91 -ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE------------------NEADGQINLG 151 (459)
T ss_pred -hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC------------------Cccchhccch
Confidence 4567777776665544322 123333344555566666665555543210 0113345788
Q ss_pred HhhhccCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcC
Q 005877 218 ALRKSRGEDDEAFQILEYQAQKG--NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG---EPQSMEFLGEIYARG 292 (672)
Q Consensus 218 ~~~~~~g~~~~Ai~~~~~aa~~~--~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g 292 (672)
-+..+.|+++.|++-|+.+.+-+ +|..-++++.++++. +++..|+++....++.| +|+ +.+|..- .|
T Consensus 152 CllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~-----~qyasALk~iSEIieRG~r~HPE--lgIGm~t-eg 223 (459)
T KOG4340|consen 152 CLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSS-----RQYASALKHISEIIERGIRQHPE--LGIGMTT-EG 223 (459)
T ss_pred heeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhh-----hhHHHHHHHHHHHHHhhhhcCCc--cCcccee-cc
Confidence 89999999999999999998774 889999999999988 59999999999988864 332 1222211 11
Q ss_pred CCC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH----HhCCCHHHHHHHHHHHHcCC
Q 005877 293 AGV--ERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKA----ADNEEAGGHYNLGVMYYKGI 366 (672)
Q Consensus 293 ~g~--~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a----~~~~~~~a~~~Lg~~y~~g~ 366 (672)
..+ -+|. ....+.+..++.+.-..++.. .+|++.|.+.+... -..-+|....|++.+-..|.
T Consensus 224 iDvrsvgNt-------~~lh~Sal~eAfNLKaAIeyq-----~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~ 291 (459)
T KOG4340|consen 224 IDVRSVGNT-------LVLHQSALVEAFNLKAAIEYQ-----LRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDAR 291 (459)
T ss_pred Cchhcccch-------HHHHHHHHHHHhhhhhhhhhh-----cccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCC
Confidence 110 1111 111122234455555555554 45877777665432 11237788888888776643
Q ss_pred CchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 005877 367 GVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHT 400 (672)
Q Consensus 367 g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~ 400 (672)
-+.+--+ +.++ .-..+-+++..-||=.+|-+
T Consensus 292 p~~g~~K--LqFL-L~~nPfP~ETFANlLllyCK 322 (459)
T KOG4340|consen 292 PTEGFEK--LQFL-LQQNPFPPETFANLLLLYCK 322 (459)
T ss_pred ccccHHH--HHHH-HhcCCCChHHHHHHHHHHhh
Confidence 2222111 1111 11234466777777766654
No 111
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.65 E-value=0.00022 Score=75.72 Aligned_cols=372 Identities=12% Similarity=0.135 Sum_probs=226.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh--hhhccCCCCcccc-hhcccC-chhhhhHhhhc------cCChHHHH
Q 005877 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVN--SFLISKDSPVIEP-IRIHNG-AEENKGALRKS------RGEDDEAF 230 (672)
Q Consensus 161 ~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~--~~~~~~~~~~~~~-~~l~~~-~~~~~~~~~~~------~g~~~~Ai 230 (672)
.-...||..|.+.|.+++|...|++++..... +|.. +... .+.-+. ....++..-.. .-+.+-..
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~-----ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~ 323 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQ-----IFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHM 323 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHH-----HHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHH
Confidence 34567899999999999999999999875432 1110 0000 000000 00001100000 11223344
Q ss_pred HHHHHHHHcC--------------CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-------CCH-HHHHHHHHH
Q 005877 231 QILEYQAQKG--------------NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-------GEP-QSMEFLGEI 288 (672)
Q Consensus 231 ~~~~~aa~~~--------------~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-------~~~-~a~~~Lg~~ 288 (672)
..|+..++.. +..-....-.++ +++..+-+..|..|+.. |.+ .....+|.+
T Consensus 324 a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~-------e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~fakl 396 (835)
T KOG2047|consen 324 ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY-------EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKL 396 (835)
T ss_pred HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhh-------cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHH
Confidence 4555544332 222222222222 24788899999999874 333 467889999
Q ss_pred HHcCCCCcCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC------------
Q 005877 289 YARGAGVERNYTKALEWLTHAARQQL------YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE------------ 350 (672)
Q Consensus 289 y~~g~g~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~------------ 350 (672)
|.+ .++.+.|...|++|.+-+. +..+..-|.+-+. ..+++.|+++.++|...-
T Consensus 397 Ye~----~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElr-----h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 397 YEN----NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELR-----HENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred HHh----cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 999 9999999999999997642 3445666666664 459999999999997541
Q ss_pred --------CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHH
Q 005877 351 --------EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAE 420 (672)
Q Consensus 351 --------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~ 420 (672)
....+..++.+-.. .|-++.-...|.+.++. -.|..-.|.|..+++ .+-+++|...|++.+.
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs----~gtfestk~vYdriidLriaTPqii~NyAmfLEe----h~yfeesFk~YErgI~ 539 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEES----LGTFESTKAVYDRIIDLRIATPQIIINYAMFLEE----HKYFEESFKAYERGIS 539 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hHHHHHHHHHHHcCCc
Confidence 12223334444444 55666667777777664 367778889988887 7888999999999988
Q ss_pred cCChh-------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHH
Q 005877 421 RGPWS-------SLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHS 493 (672)
Q Consensus 421 ~~~~~-------a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~ 493 (672)
.-+|. .+......-|.....+.|...|++|++.-.+..--.+=.+|.++.+ +-|-...|++
T Consensus 540 LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEE------------e~GLar~ams 607 (835)
T KOG2047|consen 540 LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEE------------EHGLARHAMS 607 (835)
T ss_pred cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH------------HhhHHHHHHH
Confidence 87543 3333344455556899999999999994343332223233333211 1345678999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-CCHHH---HHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 005877 494 LWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ-SNAQA---MFNLGYMHEHGQGLPLDLHLAKRYYDQ 569 (672)
Q Consensus 494 ~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~a---~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 569 (672)
.|++|...-+....+.+=.+|.......=-...-...|++|++. .+..+ ....+.+= ...|..+.|...|.-
T Consensus 608 iyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlE----tklGEidRARaIya~ 683 (835)
T KOG2047|consen 608 IYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLE----TKLGEIDRARAIYAH 683 (835)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHh----hhhhhHHHHHHHHHh
Confidence 99998877776666655555542100000122345678888773 22222 22233332 237899999999999
Q ss_pred HHhc-CCCC
Q 005877 570 ALEV-DPAA 577 (672)
Q Consensus 570 A~~~-~~~~ 577 (672)
+.+. +|-.
T Consensus 684 ~sq~~dPr~ 692 (835)
T KOG2047|consen 684 GSQICDPRV 692 (835)
T ss_pred hhhcCCCcC
Confidence 9988 4443
No 112
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.65 E-value=5.3e-07 Score=80.51 Aligned_cols=86 Identities=19% Similarity=0.127 Sum_probs=65.8
Q ss_pred HhHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHH
Q 005877 486 ERHQCAHSLWWQAS--EQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLH 561 (672)
Q Consensus 486 ~~~~~A~~~~~~a~--~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~ 561 (672)
+++++|+.++++++ .+.++.+++++|.++. ..+++++|+.+++++++. .++..++++|.+|.. .|+++
T Consensus 31 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~----~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~ 102 (135)
T TIGR02552 31 GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQ----MLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA----LGEPE 102 (135)
T ss_pred ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----cCCHH
Confidence 34444444444332 3456778888888888 778999999999998764 678889999999887 78999
Q ss_pred HHHHHHHHHHhcCCCCcc
Q 005877 562 LAKRYYDQALEVDPAAKL 579 (672)
Q Consensus 562 ~A~~~~~~A~~~~~~~~~ 579 (672)
+|+.+|+++++.+|+...
T Consensus 103 ~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 103 SALKALDLAIEICGENPE 120 (135)
T ss_pred HHHHHHHHHHHhccccch
Confidence 999999999999887653
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.59 E-value=1.6e-06 Score=92.89 Aligned_cols=213 Identities=13% Similarity=0.086 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHH-
Q 005877 160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ- 238 (672)
Q Consensus 160 ~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~- 238 (672)
......++.++...|-...|+..|++.-. ..++...|...|+..+|..+..+.++
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erlem------------------------w~~vi~CY~~lg~~~kaeei~~q~lek 453 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERLEM------------------------WDPVILCYLLLGQHGKAEEINRQELEK 453 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhHHH------------------------HHHHHHHHHHhcccchHHHHHHHHhcC
Confidence 35667788999999999999999998743 23466778889999999999999888
Q ss_pred cCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHH
Q 005877 239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYS 316 (672)
Q Consensus 239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~ 316 (672)
+.++..+..||.+..+. --+++|.++.+. -+..|...+|..... .++++++.+.++.+++.+ ...
T Consensus 454 ~~d~~lyc~LGDv~~d~-----s~yEkawElsn~----~sarA~r~~~~~~~~----~~~fs~~~~hle~sl~~nplq~~ 520 (777)
T KOG1128|consen 454 DPDPRLYCLLGDVLHDP-----SLYEKAWELSNY----ISARAQRSLALLILS----NKDFSEADKHLERSLEINPLQLG 520 (777)
T ss_pred CCcchhHHHhhhhccCh-----HHHHHHHHHhhh----hhHHHHHhhcccccc----chhHHHHHHHHHHHhhcCccchh
Confidence 46899999999987544 234444444432 345678888887777 799999999999999875 678
Q ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHH
Q 005877 317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFY 392 (672)
Q Consensus 317 a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~ 392 (672)
.++.+|.+... -++++.|.++|.+.+.. ++..++.||...|.. .++..+|...++.|++- +++..+-
T Consensus 521 ~wf~~G~~ALq-----lek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~----~~~k~ra~~~l~EAlKcn~~~w~iWE 591 (777)
T KOG1128|consen 521 TWFGLGCAALQ-----LEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR----LKKKKRAFRKLKEALKCNYQHWQIWE 591 (777)
T ss_pred HHHhccHHHHH-----HhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH----HhhhHHHHHHHHHHhhcCCCCCeeee
Confidence 89999999986 45999999999999765 799999999999999 99999999999999885 4667666
Q ss_pred HHHHHHHcCCCccCCHHHHHHHHHHHHHcC
Q 005877 393 QLAKMFHTGVGLKKNLHMATALYKLVAERG 422 (672)
Q Consensus 393 ~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~ 422 (672)
|.-.+... .++++.|++.|++.++..
T Consensus 592 Nymlvsvd----vge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 592 NYMLVSVD----VGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred chhhhhhh----cccHHHHHHHHHHHHHhh
Confidence 66666666 899999999999988764
No 114
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.56 E-value=0.00025 Score=76.98 Aligned_cols=250 Identities=16% Similarity=0.104 Sum_probs=168.0
Q ss_pred hhhHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHH
Q 005877 215 NKGALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG--EPQSMEFLGEIYA 290 (672)
Q Consensus 215 ~~~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~ 290 (672)
....+....|++++|++.++..... +....+-..|.+++..+ ++++|...|+..++.+ +..-+..|..+..
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg-----~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLG-----RKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 4567778899999999999886655 46777888899999884 9999999999999854 4444444444441
Q ss_pred cCCC-CcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCCcCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHcCCC
Q 005877 291 RGAG-VERNYTKALEWLTHAARQQ-LYSAYNGIGYLYVKGYGVEKKNYT-KAKEYFEKAADNEEAGGHYNLGVMYYKGIG 367 (672)
Q Consensus 291 ~g~g-~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~-~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g 367 (672)
-..+ ...+.+.-...|+...+.- ...+...+......| .++. .+..|....+..|.|....+|-.+|..
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g-----~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d--- 155 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEG-----DEFKERLDEYLRPQLRKGVPSLFSNLKPLYKD--- 155 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCH-----HHHHHHHHHHHHHHHhcCCchHHHHHHHHHcC---
Confidence 1111 1235677777777655432 233344455444432 2444 455577888888999999999999875
Q ss_pred chhcHHHHHHHHHH---HHHc------------CCH----HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhH
Q 005877 368 VKRDVKLACKYFLV---AANA------------GHQ----KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSS 426 (672)
Q Consensus 368 ~~~~~~~A~~~~~~---A~~~------------~~~----~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a 426 (672)
.....-....++. .++. .++ .+++.|+..|.. .+++++|+++.+++++..| ++.
T Consensus 156 -~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~----~g~~~~Al~~Id~aI~htPt~~el 230 (517)
T PF12569_consen 156 -PEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY----LGDYEKALEYIDKAIEHTPTLVEL 230 (517)
T ss_pred -hhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCcHHH
Confidence 3332222222222 2211 111 466888888877 8999999999999999986 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHH
Q 005877 427 LSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSN--AAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQA 498 (672)
Q Consensus 427 ~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~n--la~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 498 (672)
+...|.++-..|++.+|..+++.|-.++...-..| .+..+-+ .++.++|.+....-
T Consensus 231 y~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR----------------a~~~e~A~~~~~~F 288 (517)
T PF12569_consen 231 YMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR----------------AGRIEEAEKTASLF 288 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH----------------CCCHHHHHHHHHhh
Confidence 88889999999999999999999977764433322 3444433 55677777666643
No 115
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.53 E-value=2.7e-06 Score=86.23 Aligned_cols=163 Identities=23% Similarity=0.252 Sum_probs=121.5
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCC
Q 005877 261 RDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ----QL----YSAYNGIGYLYVKGYGVE 332 (672)
Q Consensus 261 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~ 332 (672)
.|++.|...|++|. ..|.. .+++++|...|.++++. ++ ..++...+.+|..
T Consensus 29 ~~~e~Aa~~y~~Aa------------~~fk~----~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~----- 87 (282)
T PF14938_consen 29 PDYEEAADLYEKAA------------NCFKL----AKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK----- 87 (282)
T ss_dssp HHHHHHHHHHHHHH------------HHHHH----TT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-----
T ss_pred CCHHHHHHHHHHHH------------HHHHH----HhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----
Confidence 48889999998874 45666 78888888888888742 22 3356677888875
Q ss_pred cCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCch-hcHHHHHHHHHHHHHc----CC----HHHHHHHH
Q 005877 333 KKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVK-RDVKLACKYFLVAANA----GH----QKAFYQLA 395 (672)
Q Consensus 333 ~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~-~~~~~A~~~~~~A~~~----~~----~~a~~~L~ 395 (672)
.++++|+.+|++|++. |+ +..+.++|.+|.. . +++++|+++|++|++. +. .....++|
T Consensus 88 -~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~----~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A 162 (282)
T PF14938_consen 88 -GDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEE----QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAA 162 (282)
T ss_dssp -TTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC----TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred -hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHH
Confidence 3899999999999864 44 5678899999998 7 8999999999999873 22 35677889
Q ss_pred HHHHcCCCccCCHHHHHHHHHHHHHcC---C---h---hHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 396 KMFHTGVGLKKNLHMATALYKLVAERG---P---W---SSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 396 ~~y~~g~g~~~~~~~A~~~~~~a~~~~---~---~---~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
.++.. .+++++|+..|++++... + . ..++..+.++...||+..|...+++..+.
T Consensus 163 ~l~~~----l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 163 DLYAR----LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHH----TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHH----hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99887 899999999999998753 1 1 13456777888899999999999887654
No 116
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.48 E-value=0.00016 Score=78.39 Aligned_cols=259 Identities=14% Similarity=0.130 Sum_probs=151.2
Q ss_pred HHHHHHHHhhcCCcccCCHHHHHHHHHHHHh----------------------CCCHHHHHHHHHHHhccCCHHHHHHHH
Q 005877 126 ARSVLGFLYGMGMMRERNKGKAFLYHHFAAE----------------------GGNIQSKMAVAYTYLRQDMHDKAVKLY 183 (672)
Q Consensus 126 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~----------------------~~~~~a~~~Lg~~y~~~~~~~~A~~~y 183 (672)
.+|+.+.-... .+|.+.|++||+|+-. ..++..+.--|......|+.+.|+.+|
T Consensus 860 Tyy~yA~~Lea----r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y 935 (1416)
T KOG3617|consen 860 TYYNYAKYLEA----RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFY 935 (1416)
T ss_pred hHHHHHHHHHh----hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHH
Confidence 34444444444 7889999999998721 123333444566666789999999999
Q ss_pred HHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCH
Q 005877 184 AELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDR 263 (672)
Q Consensus 184 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~ 263 (672)
..+-+- ..+-.+...+|+.++|-.+- -+.||..|.|.||+.|... ++.
T Consensus 936 ~~A~D~------------------------fs~VrI~C~qGk~~kAa~iA---~esgd~AAcYhlaR~YEn~-----g~v 983 (1416)
T KOG3617|consen 936 SSAKDY------------------------FSMVRIKCIQGKTDKAARIA---EESGDKAACYHLARMYEND-----GDV 983 (1416)
T ss_pred HHhhhh------------------------hhheeeEeeccCchHHHHHH---HhcccHHHHHHHHHHhhhh-----HHH
Confidence 887552 22445566788888887653 3458999999999999887 499
Q ss_pred HHHHHHHHHHHHc----------CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCc
Q 005877 264 TKALMWFSKAADK----------GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEK 333 (672)
Q Consensus 264 ~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~ 333 (672)
.+|+.+|.+|-.. +-..-+.+|+.+-. +.|.-.|..||+..- .+..-+.+..+ ..
T Consensus 984 ~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~-----~~d~v~aArYyEe~g------~~~~~AVmLYH----kA 1048 (1416)
T KOG3617|consen 984 VKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSG-----GSDLVSAARYYEELG------GYAHKAVMLYH----KA 1048 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcC-----chhHHHHHHHHHHcc------hhhhHHHHHHH----hh
Confidence 9999999987431 22333344443322 455566666666421 01111111111 01
Q ss_pred CCHHH------------HHHHHHHHHhC-CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 005877 334 KNYTK------------AKEYFEKAADN-EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHT 400 (672)
Q Consensus 334 ~~~~~------------A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~ 400 (672)
|-+.+ |+++.-+=++. .+|.....-+..+.. ..+|++|+.++-++-+.. -.|+.+...
T Consensus 1049 Gm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~----~~qyekAV~lL~~ar~~~-----~AlqlC~~~ 1119 (1416)
T KOG3617|consen 1049 GMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFEN----NQQYEKAVNLLCLAREFS-----GALQLCKNR 1119 (1416)
T ss_pred cchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHH-----HHHHHHhcC
Confidence 22333 33333332333 377777888888888 788999988877664321 123334333
Q ss_pred CCCccCCHHHHHHHHHHH-HHc-C-C-----hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005877 401 GVGLKKNLHMATALYKLV-AER-G-P-----WSSLSRWALESYLKGDVGKAFLLYSRM 450 (672)
Q Consensus 401 g~g~~~~~~~A~~~~~~a-~~~-~-~-----~~a~~~lg~~~~~~g~~~~A~~~~~~a 450 (672)
+.-+...+ -+.. ... + + ...+-.+|....++|+|..|-+-|.+|
T Consensus 1120 nv~vtee~------aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1120 NVRVTEEF------AELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred CCchhHHH------HHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 22111111 0110 000 1 1 124566788888899988888877766
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.47 E-value=1.3e-05 Score=90.10 Aligned_cols=128 Identities=9% Similarity=-0.048 Sum_probs=105.4
Q ss_pred CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHH
Q 005877 386 GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSN 461 (672)
Q Consensus 386 ~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~n 461 (672)
.+++++.+||.+... .+.+++|..+++.+++..| ..+...++.++.+.+.+++|+..++++++. .+..+++.
T Consensus 84 ~~~~~~~~La~i~~~----~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 84 HTELFQVLVARALEA----AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred ccHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 457888888888887 8888888888888888875 456778888888888888888888888654 57888888
Q ss_pred HHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 005877 462 AAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ--GNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ 537 (672)
Q Consensus 462 la~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~ 537 (672)
+|.++.. .+++++|+.+|++++.+ +++.+++.+|.++. ..|+.++|...|++|++.
T Consensus 160 ~a~~l~~----------------~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~----~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 160 EAKSWDE----------------IGQSEQADACFERLSRQHPEFENGYVGWAQSLT----RRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHH----------------hcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHh
Confidence 8888887 77888888888887754 45788899999998 889999999999998775
No 118
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.47 E-value=4.8e-07 Score=70.15 Aligned_cols=65 Identities=35% Similarity=0.496 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHhcCC
Q 005877 503 NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPL-DLHLAKRYYDQALEVDP 575 (672)
Q Consensus 503 ~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~~~~ 575 (672)
++.+++.+|.+++ ..+++++|+.+|++|++. +++.+++++|.+|.. .+ ++++|++++++|++++|
T Consensus 2 ~a~~~~~~g~~~~----~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~----~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYF----QQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK----LGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHH----HTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH----TTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hCccHHHHHHHHHHHHHcCc
Confidence 5788999999999 899999999999999874 789999999999987 77 79999999999999987
No 119
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.46 E-value=3.4e-06 Score=75.23 Aligned_cols=105 Identities=18% Similarity=0.115 Sum_probs=63.6
Q ss_pred HHHHHHhCC--CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHH
Q 005877 342 YFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKL 417 (672)
Q Consensus 342 ~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~ 417 (672)
.|+++++.+ ++.+.+.+|..+.. .+++++|..+|+++++. .++.+++++|.++.. .+++++|+.++++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~ 76 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQ----QGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM----LKEYEEAIDAYAL 76 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 344444442 45556666666666 66666666666666552 345666666666665 5666666666666
Q ss_pred HHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877 418 VAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (672)
Q Consensus 418 a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g 454 (672)
+++..+ +..++.+|.++...|++++|+.+|+++++.+
T Consensus 77 ~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 77 AAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 665553 4456666666666666666666666665554
No 120
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.45 E-value=6.7e-06 Score=92.38 Aligned_cols=130 Identities=6% Similarity=-0.095 Sum_probs=85.3
Q ss_pred CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCC
Q 005877 122 GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKD 199 (672)
Q Consensus 122 ~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~ 199 (672)
.+++++.+||.+-.. .+.+++|..+++.+.+ +++..+...++.++.+.+.+++|+..++++++..
T Consensus 84 ~~~~~~~~La~i~~~----~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--------- 150 (694)
T PRK15179 84 HTELFQVLVARALEA----AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--------- 150 (694)
T ss_pred ccHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC---------
Confidence 457777777777776 7777777777777765 6777777777777777777777777777776643
Q ss_pred CCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--C
Q 005877 200 SPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--G 277 (672)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~ 277 (672)
+.++.+++.+|.++...+ ++++|+..|++++.. +
T Consensus 151 ---------------------------------------p~~~~~~~~~a~~l~~~g-----~~~~A~~~y~~~~~~~p~ 186 (694)
T PRK15179 151 ---------------------------------------SSSAREILLEAKSWDEIG-----QSEQADACFERLSRQHPE 186 (694)
T ss_pred ---------------------------------------CCCHHHHHHHHHHHHHhc-----chHHHHHHHHHHHhcCCC
Confidence 345566666666665552 666666666666542 3
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 005877 278 EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ 312 (672)
Q Consensus 278 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 312 (672)
++.++..+|..+.. .|+.++|...|+++++.
T Consensus 187 ~~~~~~~~a~~l~~----~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 187 FENGYVGWAQSLTR----RGALWRARDVLQAGLDA 217 (694)
T ss_pred cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 45566666666665 56666666666666543
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.40 E-value=2.8e-05 Score=74.13 Aligned_cols=154 Identities=20% Similarity=0.142 Sum_probs=107.6
Q ss_pred CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhH--HHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHH
Q 005877 386 GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSS--LSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSN 461 (672)
Q Consensus 386 ~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a--~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~n 461 (672)
++... .+++..+.. .++-+.+..+..+++...+.+. ..-+|......|++..|+..+.++... .+..+++-
T Consensus 65 ~d~~i-~~~a~a~~~----~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 65 EDLSI-AKLATALYL----RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred chHHH-HHHHHHHHh----cccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 34444 555555544 5666667777776665554443 333777777778888888888887544 46777777
Q ss_pred HHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--
Q 005877 462 AAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE--QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ-- 537 (672)
Q Consensus 462 la~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~-- 537 (672)
+|.+|++ .++.+.|..-|.++.+ ++++.+..|||..|+ ..+|++.|..++..+...
T Consensus 140 lgaaldq----------------~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~----L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 140 LGAALDQ----------------LGRFDEARRAYRQALELAPNEPSIANNLGMSLL----LRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHH----------------ccChhHHHHHHHHHHHhccCCchhhhhHHHHHH----HcCCHHHHHHHHHHHHhCCC
Confidence 7777777 5567777777776544 466778888888888 888999999888888664
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 005877 538 SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYD 568 (672)
Q Consensus 538 ~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 568 (672)
.+.....||+.+. +..||+..|...-.
T Consensus 200 ad~~v~~NLAl~~----~~~g~~~~A~~i~~ 226 (257)
T COG5010 200 ADSRVRQNLALVV----GLQGDFREAEDIAV 226 (257)
T ss_pred CchHHHHHHHHHH----hhcCChHHHHhhcc
Confidence 4777888888884 34888888876543
No 122
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.39 E-value=2.7e-06 Score=75.56 Aligned_cols=96 Identities=21% Similarity=0.086 Sum_probs=85.6
Q ss_pred CcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHH--HHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCC
Q 005877 84 AINGSYYITISKMMSAVTNGDVRVMEEATSEVES--AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGN 159 (672)
Q Consensus 84 ~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~--a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~ 159 (672)
.-+..|..|...+. .|++++|.+.|+- ..++.++..++.||.++.. .+++.+|+..|.+|.. +++
T Consensus 34 ~l~~lY~~A~~ly~-------~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~----~g~~~~AI~aY~~A~~L~~dd 102 (157)
T PRK15363 34 PLNTLYRYAMQLME-------VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA----QKHWGEAIYAYGRAAQIKIDA 102 (157)
T ss_pred HHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCCC
Confidence 34557777777664 6999999999999 5677899999999999999 9999999999999976 799
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 005877 160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIA 190 (672)
Q Consensus 160 ~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~ 190 (672)
+.+.+++|.+++..|+.+.|.+.|+.++...
T Consensus 103 p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 103 PQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998753
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.39 E-value=1e-05 Score=76.99 Aligned_cols=155 Identities=15% Similarity=0.069 Sum_probs=93.7
Q ss_pred CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC--ChhH
Q 005877 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSS 426 (672)
Q Consensus 351 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a 426 (672)
+..+ .++...+.. .|+-+.+..+..+++... +.....-+|..... .+++..|+..+++++... +|.+
T Consensus 66 d~~i-~~~a~a~~~----~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~----~g~~~~A~~~~rkA~~l~p~d~~~ 136 (257)
T COG5010 66 DLSI-AKLATALYL----RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIR----NGNFGEAVSVLRKAARLAPTDWEA 136 (257)
T ss_pred hHHH-HHHHHHHHh----cccccchHHHHhhhhccCcccHHHHHHHHHHHHH----hcchHHHHHHHHHHhccCCCChhh
Confidence 3444 445544444 455555555555543322 22333335555554 677777777777776665 3556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC-
Q 005877 427 LSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN- 503 (672)
Q Consensus 427 ~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~- 503 (672)
+..+|.+|.+.|+++.|..-|.++++. +.+...+|+|+.+.- .++++.|..++..+.....
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L----------------~gd~~~A~~lll~a~l~~~a 200 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL----------------RGDLEDAETLLLPAYLSPAA 200 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH----------------cCCHHHHHHHHHHHHhCCCC
Confidence 666777777777777777777777444 566777777777665 5567777777776655544
Q ss_pred -HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 005877 504 -EHAALLIGDAYYYGRGTQRDYERAAEAYMHA 534 (672)
Q Consensus 504 -~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A 534 (672)
....-||+.+.- ..+|+..|...-.+-
T Consensus 201 d~~v~~NLAl~~~----~~g~~~~A~~i~~~e 228 (257)
T COG5010 201 DSRVRQNLALVVG----LQGDFREAEDIAVQE 228 (257)
T ss_pred chHHHHHHHHHHh----hcCChHHHHhhcccc
Confidence 334446666665 777887776655443
No 124
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.38 E-value=1e-05 Score=71.99 Aligned_cols=94 Identities=15% Similarity=0.098 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHH
Q 005877 316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAF 391 (672)
Q Consensus 316 ~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~ 391 (672)
+..+.+|..... .|++++|...|+..+..+ +++.+++||.++.. .+++.+|+..|.+|.. ++++.+.
T Consensus 36 ~~lY~~A~~ly~-----~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~----~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 36 NTLYRYAMQLME-----VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA----QKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HHHHHHHHHHHH-----CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCCCchHH
Confidence 344455544443 456666666666655443 55566666666666 6666666666666644 3456666
Q ss_pred HHHHHHHHcCCCccCCHHHHHHHHHHHHHcC
Q 005877 392 YQLAKMFHTGVGLKKNLHMATALYKLVAERG 422 (672)
Q Consensus 392 ~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~ 422 (672)
+++|.++.. .++.+.|...|+.++...
T Consensus 107 ~~ag~c~L~----lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 107 WAAAECYLA----CDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHHh
Confidence 666666665 566666666666665544
No 125
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=5.7e-05 Score=71.41 Aligned_cols=151 Identities=19% Similarity=0.147 Sum_probs=106.6
Q ss_pred cCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhH
Q 005877 141 ERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGA 218 (672)
Q Consensus 141 ~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 218 (672)
.+...-|..+++..-+ +|.......-|+.+...+++++|+++|+.+++.+|.+... .-.+-.
T Consensus 65 ~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~----------------~KRKlA 128 (289)
T KOG3060|consen 65 TGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVI----------------RKRKLA 128 (289)
T ss_pred hcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHH----------------HHHHHH
Confidence 5577888888888665 6888888888999999999999999999988765543221 112344
Q ss_pred hhhccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCC
Q 005877 219 LRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAG 294 (672)
Q Consensus 219 ~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g 294 (672)
+...+|+.-+||+.+..-.+. +|.+++..|+.+|+.- +++++|.-+|++.+- +-++..+..+|.++..-.|
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~-----~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSE-----GDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 555677777777777777666 6777777777777766 477777777777653 4566666777777655222
Q ss_pred CcCCHHHHHHHHHHHHHcC
Q 005877 295 VERNYTKALEWLTHAARQQ 313 (672)
Q Consensus 295 ~~~~~~~A~~~~~~a~~~~ 313 (672)
..|.+-|.++|.++++.+
T Consensus 204 -~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 204 -AENLELARKYYERALKLN 221 (289)
T ss_pred -HHHHHHHHHHHHHHHHhC
Confidence 456677777777777664
No 126
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.28 E-value=0.0014 Score=65.17 Aligned_cols=219 Identities=18% Similarity=0.140 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC---
Q 005877 280 QSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-------LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--- 349 (672)
Q Consensus 280 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-------~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--- 349 (672)
+++.+|+.-++. .-++.+++.|-+..+... -..+...+|..+.. .+-+++++++|++|...
T Consensus 84 ea~lnlar~~e~----l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlg-----ls~fq~~Lesfe~A~~~A~~ 154 (518)
T KOG1941|consen 84 EAYLNLARSNEK----LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLG-----LSVFQKALESFEKALRYAHN 154 (518)
T ss_pred HHHHHHHHHHHH----HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhh-----HHHHHHHHHHHHHHHHHhhc
Confidence 466677777766 667777777776665432 11233345555542 34678899999888753
Q ss_pred -CCH----HHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc------CCH------HHHHHHHHHHHcCCCccCCHHHHH
Q 005877 350 -EEA----GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA------GHQ------KAFYQLAKMFHTGVGLKKNLHMAT 412 (672)
Q Consensus 350 -~~~----~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~------~~~------~a~~~L~~~y~~g~g~~~~~~~A~ 412 (672)
+++ ..+..||.+|-. .+|+++|.-+..+|++. ++. .+++.++..+.. +|..-.|.
T Consensus 155 ~~D~~LElqvcv~Lgslf~~----l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~----~G~LgdA~ 226 (518)
T KOG1941|consen 155 NDDAMLELQVCVSLGSLFAQ----LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRL----LGRLGDAM 226 (518)
T ss_pred cCCceeeeehhhhHHHHHHH----HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHH----hcccccHH
Confidence 332 456788888888 89999999998888762 333 456677777765 77777788
Q ss_pred HHHHHHH----HcCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCCCCccc
Q 005877 413 ALYKLVA----ERGP----WSSLSRWALESYLKGDVGKAFLLYSRMA--------ELGYEVAQSNAAWILDKYGEGSMCM 476 (672)
Q Consensus 413 ~~~~~a~----~~~~----~~a~~~lg~~~~~~g~~~~A~~~~~~a~--------~~g~~~a~~nla~~l~~~~~~~~~~ 476 (672)
++.+++. +.|+ ...+.-+|.+|-..||.+.|+.-|+.|. .+|...++...|..+...
T Consensus 227 e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~------- 299 (518)
T KOG1941|consen 227 ECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETL------- 299 (518)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH-------
Confidence 8887764 4454 2346678999999999999999999983 234566666677766552
Q ss_pred CCCCCCCchHhHHH-----HHHHHHHH----HhCCC----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 005877 477 GESGFCTDAERHQC-----AHSLWWQA----SEQGN----EHAALLIGDAYYYGRGTQRDYERAAEAYMHAR 535 (672)
Q Consensus 477 ~~~~~~~~~~~~~~-----A~~~~~~a----~~~~~----~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~ 535 (672)
.-..+ |++.-++. ..-|. -..+..++.+|. .+|+-++=..++.+|-
T Consensus 300 ---------r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYr----s~gl~d~~~~h~~ra~ 358 (518)
T KOG1941|consen 300 ---------RLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYR----SKGLQDELRAHVVRAH 358 (518)
T ss_pred ---------HHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH----hccchhHHHHHHHHHH
Confidence 22222 55555543 33343 234568999997 5666666556666653
No 127
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.25 E-value=0.00016 Score=71.09 Aligned_cols=173 Identities=12% Similarity=0.004 Sum_probs=112.9
Q ss_pred cCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH--hCCChH---HHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--C
Q 005877 85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPH---ARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--G 157 (672)
Q Consensus 85 ~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~---a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~ 157 (672)
+...|..|...+. .+++++|+..|++.. .++.+. +.+.||.+|.. .+++++|+.++++.++ |
T Consensus 32 ~~~~Y~~A~~~~~-------~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~----~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 32 PSEIYATAQQKLQ-------DGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK----NADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred HHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCc
Confidence 5557888888774 599999999999954 445544 45899999999 9999999999999987 4
Q ss_pred C---CHHHHHHHHHHHhccC---------------C---HHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhh
Q 005877 158 G---NIQSKMAVAYTYLRQD---------------M---HDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENK 216 (672)
Q Consensus 158 ~---~~~a~~~Lg~~y~~~~---------------~---~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 216 (672)
+ .+.+++.+|.++...+ | ..+|+..|+++++..|.+-
T Consensus 101 ~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~---------------------- 158 (243)
T PRK10866 101 THPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ---------------------- 158 (243)
T ss_pred CCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh----------------------
Confidence 4 4578888998753322 2 3467788888877654321
Q ss_pred hHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHc
Q 005877 217 GALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-----GEPQSMEFLGEIYAR 291 (672)
Q Consensus 217 ~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~ 291 (672)
-..+|...+.. +...-+.--+.+|..|+.. +++.-|+.-++..++. ..+++++.++..|..
T Consensus 159 --------ya~~A~~rl~~-l~~~la~~e~~ia~~Y~~~-----~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~ 224 (243)
T PRK10866 159 --------YTTDATKRLVF-LKDRLAKYELSVAEYYTKR-----GAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQ 224 (243)
T ss_pred --------hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHc-----CchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence 00111111111 1111233344666777666 3777777777777763 345677777777766
Q ss_pred CCCCcCCHHHHHHHHHH
Q 005877 292 GAGVERNYTKALEWLTH 308 (672)
Q Consensus 292 g~g~~~~~~~A~~~~~~ 308 (672)
.|..++|..+...
T Consensus 225 ----lg~~~~a~~~~~~ 237 (243)
T PRK10866 225 ----LQLNAQADKVAKI 237 (243)
T ss_pred ----cCChHHHHHHHHH
Confidence 6666666655543
No 128
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.25 E-value=2.7e-06 Score=65.93 Aligned_cols=64 Identities=17% Similarity=0.259 Sum_probs=59.4
Q ss_pred ChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHH
Q 005877 123 DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQD-MHDKAVKLYAELAEIA 190 (672)
Q Consensus 123 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~-~~~~A~~~y~~a~~~~ 190 (672)
++..+..+|.++.. .+++++|+.+|+++++ ++++.+++.+|.+|...+ ++++|+..++++++++
T Consensus 2 ~a~~~~~~g~~~~~----~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQ----QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHH----TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 67889999999999 9999999999999987 788999999999999999 7999999999998864
No 129
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.25 E-value=3.8e-05 Score=71.66 Aligned_cols=89 Identities=17% Similarity=0.112 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--
Q 005877 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG-----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-- 423 (672)
Q Consensus 351 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-- 423 (672)
.+.+++++|..+.. .+++++|+.+|+++++.. ...+++++|.++.. .+++++|+.+|+++++..+
T Consensus 34 ~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 34 EAFVYYRDGMSAQA----DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS----NGEHDKALEYYHQALELNPKQ 105 (172)
T ss_pred hHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccc
Confidence 45556666666666 666666666666666432 13466666666665 6666666666666666543
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHH
Q 005877 424 WSSLSRWALESYLKGDVGKAFLLY 447 (672)
Q Consensus 424 ~~a~~~lg~~~~~~g~~~~A~~~~ 447 (672)
..++..+|.++...|+...+...+
T Consensus 106 ~~~~~~lg~~~~~~g~~~~a~~~~ 129 (172)
T PRK02603 106 PSALNNIAVIYHKRGEKAEEAGDQ 129 (172)
T ss_pred HHHHHHHHHHHHHcCChHhHhhCH
Confidence 344556666666666554444333
No 130
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.24 E-value=2.4e-05 Score=79.04 Aligned_cols=246 Identities=15% Similarity=0.050 Sum_probs=152.4
Q ss_pred cCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcH
Q 005877 296 ERNYTKALEWLTHAARQQL---YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDV 372 (672)
Q Consensus 296 ~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~ 372 (672)
.|+|.+++.-... ..... ......+.+.|.. .|.++..+.-..... .....+...++..+.. ..+.
T Consensus 14 ~G~Y~~~i~e~~~-~~~~~~~~~e~~~~~~Rs~iA-----lg~~~~vl~ei~~~~-~~~l~av~~la~y~~~----~~~~ 82 (290)
T PF04733_consen 14 LGNYQQCINEASL-KSFSPENKLERDFYQYRSYIA-----LGQYDSVLSEIKKSS-SPELQAVRLLAEYLSS----PSDK 82 (290)
T ss_dssp TT-HHHHCHHHHC-HTSTCHHHHHHHHHHHHHHHH-----TT-HHHHHHHS-TTS-SCCCHHHHHHHHHHCT----STTH
T ss_pred hhhHHHHHHHhhc-cCCCchhHHHHHHHHHHHHHH-----cCChhHHHHHhccCC-ChhHHHHHHHHHHHhC----ccch
Confidence 5777777765551 12222 2233444444443 345554443332211 2233455555555544 3455
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 005877 373 KLACKYFLVAANA----GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYS 448 (672)
Q Consensus 373 ~~A~~~~~~A~~~----~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~ 448 (672)
+.++.-++..+.. .++....-.|.++.. .+++++|+..+.+. ++.+...-...++...++++.|.+.++
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~----~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFH----EGDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCC----CCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHH----cCCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555443322 133444555566655 78888888887765 556666667777888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhCCCCCCCHHH
Q 005877 449 RMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ--GNEHAALLIGDAYYYGRGTQRDYER 526 (672)
Q Consensus 449 ~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lG~~y~~g~g~~~d~~~ 526 (672)
.+-+.+......+++-.+-.... | .+.+.+|...|+...+. .++..++.++.++. ..+++++
T Consensus 156 ~~~~~~eD~~l~qLa~awv~l~~-----g-------~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l----~~~~~~e 219 (290)
T PF04733_consen 156 NMQQIDEDSILTQLAEAWVNLAT-----G-------GEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHL----QLGHYEE 219 (290)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHH-----T-------TTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHH----HCT-HHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHh-----C-------chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH----HhCCHHH
Confidence 88777665555555544333111 1 23577888888876655 34677788999999 8999999
Q ss_pred HHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHhcCCCCcc
Q 005877 527 AAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDL-HLAKRYYDQALEVDPAAKL 579 (672)
Q Consensus 527 A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~-~~A~~~~~~A~~~~~~~~~ 579 (672)
|.+.+++|++. ++++++.|+..+..+ .|+. +.+.++..+....+|+...
T Consensus 220 Ae~~L~~al~~~~~~~d~LaNliv~~~~----~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 220 AEELLEEALEKDPNDPDTLANLIVCSLH----LGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHHHHCCC-CCHHHHHHHHHHHHHH----TT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHH----hCCChhHHHHHHHHHHHhCCCChH
Confidence 99999999774 789999999998776 4444 6677888888888887543
No 131
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=0.012 Score=60.86 Aligned_cols=417 Identities=12% Similarity=-0.001 Sum_probs=244.3
Q ss_pred CChhhHHHHHHHHHHHHhC--CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCHHH
Q 005877 103 GDVRVMEEATSEVESAAME--GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDK 178 (672)
Q Consensus 103 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~~~~~~~ 178 (672)
...+++..|...|++|.+. .+...+...+.+=.. .+....|...+.+|+.. .-....+..-++-...||...
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emk----nk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMK----NKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAG 159 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHh----hhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHH
Confidence 3457778888888887665 345555555555444 55667777777777763 323333333333344688888
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCC
Q 005877 179 AVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK-GNAGAMYKIGLFYYFGLR 257 (672)
Q Consensus 179 A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~-~~~~a~~~Lg~~y~~~~~ 257 (672)
|...|++-++-.|.. .+...--......++.+.|-.+|++-.-- .+...+...+..=...
T Consensus 160 aRqiferW~~w~P~e-----------------qaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~-- 220 (677)
T KOG1915|consen 160 ARQIFERWMEWEPDE-----------------QAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKH-- 220 (677)
T ss_pred HHHHHHHHHcCCCcH-----------------HHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhc--
Confidence 888887765532210 11111112233455667777777775443 3556666666665555
Q ss_pred CcccCHHHHHHHHHHHHHc-CCH----HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHcCC
Q 005877 258 GLRRDRTKALMWFSKAADK-GEP----QSMEFLGEIYARGAGVERNYTKALEWLTHAARQ---QLYSAYNGIGYLYVKGY 329 (672)
Q Consensus 258 ~~~~~~~~A~~~~~~a~~~-~~~----~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~ 329 (672)
++...|...|++|++. ++. ......+..=.. ++.++.|.-.|+-|++. +.+.-++.-=.......
T Consensus 221 ---g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~----qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqf 293 (677)
T KOG1915|consen 221 ---GNVALARSVYERAIEFLGDDEEAEILFVAFAEFEER----QKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQF 293 (677)
T ss_pred ---CcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHh
Confidence 4888888888888874 321 122223333333 67888888888888874 33333332222222222
Q ss_pred CCCcCCHHHHHH-----HHHHHHhCC--CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHH---------HHHH
Q 005877 330 GVEKKNYTKAKE-----YFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQK---------AFYQ 393 (672)
Q Consensus 330 g~~~~~~~~A~~-----~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~---------a~~~ 393 (672)
|... -.+.++. -|++-+..+ |.++++-+-.+-.. .|+.+.-.+.|++|+..-++. .+.+
T Consensus 294 Gd~~-gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~----~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLW 368 (677)
T KOG1915|consen 294 GDKE-GIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEES----VGDKDRIRETYERAIANVPPASEKRYWRRYIYLW 368 (677)
T ss_pred cchh-hhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHh----cCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHH
Confidence 2211 3344443 344444443 77888887777777 788999999999997654331 1122
Q ss_pred HHHHHHcCCCccCCHHHHHHHHHHHHHcCChh----H--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005877 394 LAKMFHTGVGLKKNLHMATALYKLVAERGPWS----S--LSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILD 467 (672)
Q Consensus 394 L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~----a--~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~ 467 (672)
+-.++..- -..+|.+.+...|+.+++.-|-. + +...+.......+...|...+-.|+-.-...- .--+++-.
T Consensus 369 inYalyeE-le~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIel 446 (677)
T KOG1915|consen 369 INYALYEE-LEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-LFKGYIEL 446 (677)
T ss_pred HHHHHHHH-HHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-HHHHHHHH
Confidence 22221110 13678899999999998865421 2 22233334455677888888777754422111 11122111
Q ss_pred HhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC---HHH
Q 005877 468 KYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN--EHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSN---AQA 542 (672)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~~---~~a 542 (672)
. ...+++++...+|++-++-++ -.++...|.+-. ..+|.++|...|+.|+.+.. |.-
T Consensus 447 E--------------lqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~----~LgdtdRaRaifelAi~qp~ldmpel 508 (677)
T KOG1915|consen 447 E--------------LQLREFDRCRKLYEKFLEFSPENCYAWSKYAELET----SLGDTDRARAIFELAISQPALDMPEL 508 (677)
T ss_pred H--------------HHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHH----HhhhHHHHHHHHHHHhcCcccccHHH
Confidence 1 115578888999998777665 445666676666 78999999999999998643 332
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877 543 MFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA 577 (672)
Q Consensus 543 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 577 (672)
+.. +++=. .--.+.+++|...|++-++..+-.
T Consensus 509 lwk-aYIdF--Ei~~~E~ekaR~LYerlL~rt~h~ 540 (677)
T KOG1915|consen 509 LWK-AYIDF--EIEEGEFEKARALYERLLDRTQHV 540 (677)
T ss_pred HHH-Hhhhh--hhhcchHHHHHHHHHHHHHhcccc
Confidence 222 22211 112688999999999998876553
No 132
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.17 E-value=0.013 Score=60.54 Aligned_cols=378 Identities=13% Similarity=0.045 Sum_probs=251.1
Q ss_pred cCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhH
Q 005877 141 ERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGA 218 (672)
Q Consensus 141 ~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 218 (672)
++++.+|...|++|++. .+....+..+.+-++.+...-|...+.+++.+-|.-- .....--.
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd----------------qlWyKY~y 149 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD----------------QLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH----------------HHHHHHHH
Confidence 78999999999999985 5677788888888888999999999999998755311 11111222
Q ss_pred hhhccCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCc
Q 005877 219 LRKSRGEDDEAFQILEYQAQKG-NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-GEPQSMEFLGEIYARGAGVE 296 (672)
Q Consensus 219 ~~~~~g~~~~Ai~~~~~aa~~~-~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~ 296 (672)
+...+|+..-|-+.|++-.+-. +..+....-..=+.- ++.+.|...|++-+-- .+...+...+..=.. -
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRy-----keieraR~IYerfV~~HP~v~~wikyarFE~k----~ 220 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRY-----KEIERARSIYERFVLVHPKVSNWIKYARFEEK----H 220 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh-----hHHHHHHHHHHHHheecccHHHHHHHHHHHHh----c
Confidence 3346788999999999987663 556665555444433 4889999999997643 334445555555555 6
Q ss_pred CCHHHHHHHHHHHHHc-CC--HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHcCCCchh
Q 005877 297 RNYTKALEWLTHAARQ-QL--YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN---EEAGGHYNLGVMYYKGIGVKR 370 (672)
Q Consensus 297 ~~~~~A~~~~~~a~~~-~~--~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~ 370 (672)
|+..-|...|++|++. ++ .....-.+...+. -.++.++.|.-.|+-|++. +.+.-.+.-=..+.+..|-..
T Consensus 221 g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fE---e~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~ 297 (677)
T KOG1915|consen 221 GNVALARSVYERAIEFLGDDEEAEILFVAFAEFE---ERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKE 297 (677)
T ss_pred CcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchh
Confidence 8899999999999874 22 1122222322221 0144888899999999875 444444433334444333233
Q ss_pred cHHHHHH-----HHHHHHHcC--CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhH---------HHHHHHHH
Q 005877 371 DVKLACK-----YFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSS---------LSRWALES 434 (672)
Q Consensus 371 ~~~~A~~-----~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a---------~~~lg~~~ 434 (672)
-.+.++. -|++-++.+ +-++++..-.+-+. .++.+.-.+.|++|+...||.. +.++-.++
T Consensus 298 gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~----~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYal 373 (677)
T KOG1915|consen 298 GIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEES----VGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYAL 373 (677)
T ss_pred hhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHh----cCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHH
Confidence 3344432 345544433 66888887777776 7999999999999998876532 33343343
Q ss_pred H---hcCCHHHHHHHHHHHHHcC----CHHH--HHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHH
Q 005877 435 Y---LKGDVGKAFLLYSRMAELG----YEVA--QSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEH 505 (672)
Q Consensus 435 ~---~~g~~~~A~~~~~~a~~~g----~~~a--~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 505 (672)
+ ...|.+.+...|+.+++.= ..-+ +.-+|...-+ +.++..|.+.+-.|+-.-+.+
T Consensus 374 yeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIR----------------q~~l~~ARkiLG~AIG~cPK~ 437 (677)
T KOG1915|consen 374 YEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIR----------------QLNLTGARKILGNAIGKCPKD 437 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHH----------------HcccHHHHHHHHHHhccCCch
Confidence 3 4579999999999998862 1222 2223333222 557778888887777666654
Q ss_pred HHH-HHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcC
Q 005877 506 AAL-LIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVD 574 (672)
Q Consensus 506 a~~-~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 574 (672)
-.+ ..-.+-. ..+++++....|++-++- .+..++...|.+-.. .||-+.|...|+.|+...
T Consensus 438 KlFk~YIelEl----qL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~----LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 438 KLFKGYIELEL----QLREFDRCRKLYEKFLEFSPENCYAWSKYAELETS----LGDTDRARAIFELAISQP 501 (677)
T ss_pred hHHHHHHHHHH----HHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHH----hhhHHHHHHHHHHHhcCc
Confidence 444 2222222 568999999999999884 566676666666444 899999999999999875
No 133
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.16 E-value=5.7e-05 Score=64.97 Aligned_cols=93 Identities=22% Similarity=0.101 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh--
Q 005877 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGH-----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW-- 424 (672)
Q Consensus 352 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~-----~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~-- 424 (672)
|.++|++|.++.. .|+.++|+.+|++++..|. ..++..+|..+.. .|++++|+.+++++++..|.
T Consensus 1 ~~~~~~~A~a~d~----~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~----LG~~deA~~~L~~~~~~~p~~~ 72 (120)
T PF12688_consen 1 PRALYELAWAHDS----LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN----LGRYDEALALLEEALEEFPDDE 72 (120)
T ss_pred CchHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCcc
Confidence 3578889999988 8999999999999988652 3577889988887 89999999999999877443
Q ss_pred ---hHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005877 425 ---SSLSRWALESYLKGDVGKAFLLYSRMAE 452 (672)
Q Consensus 425 ---~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 452 (672)
.....++..++..|++++|+.++..++.
T Consensus 73 ~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 73 LNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455678888999999999999988764
No 134
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.15 E-value=0.019 Score=61.53 Aligned_cols=371 Identities=13% Similarity=0.073 Sum_probs=224.2
Q ss_pred HHHHHHHhhcCCcccCCHHHHHHHHHHHHhC-----CCH---HHH--H-------HHHHHHhcc------CCHHHHHHHH
Q 005877 127 RSVLGFLYGMGMMRERNKGKAFLYHHFAAEG-----GNI---QSK--M-------AVAYTYLRQ------DMHDKAVKLY 183 (672)
Q Consensus 127 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~-----~~~---~a~--~-------~Lg~~y~~~------~~~~~A~~~y 183 (672)
+..|+..|.. .+.+++|...|++++.. +.. +++ + .++..-... -+.+-....|
T Consensus 251 w~SLAdYYIr----~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 251 WCSLADYYIR----SGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHH----hhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 4456666766 88999999999999763 111 111 1 111000011 1334445566
Q ss_pred HHHHHHHHhhhhccCCCCcccchhc---ccCchhhhhHhhhccCChHHHHHHHHHHHHcCCH--------HHHHHHHHHH
Q 005877 184 AELAEIAVNSFLISKDSPVIEPIRI---HNGAEENKGALRKSRGEDDEAFQILEYQAQKGNA--------GAMYKIGLFY 252 (672)
Q Consensus 184 ~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~--------~a~~~Lg~~y 252 (672)
+.+++..+-. ...+.+ ........-.+....|+..+-+..|..++..-+| .....+|.+|
T Consensus 327 e~lm~rr~~~---------lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklY 397 (835)
T KOG2047|consen 327 ESLMNRRPLL---------LNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLY 397 (835)
T ss_pred HHHHhccchH---------HHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHH
Confidence 6665543211 011111 1122233445566788899999999998766333 4677889999
Q ss_pred HhcCCCcccCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC----------CHH
Q 005877 253 YFGLRGLRRDRTKALMWFSKAADKGE------PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ----------LYS 316 (672)
Q Consensus 253 ~~~~~~~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----------~~~ 316 (672)
... ++.+.|...|+++.+-.. +..+...|.+=.+ .++++.|++..++|.... .-.
T Consensus 398 e~~-----~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElr----h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 398 ENN-----GDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELR----HENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred Hhc-----CcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHh----hhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 888 499999999999988532 5667777888777 889999999999987432 111
Q ss_pred HHHHHH------HHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCH
Q 005877 317 AYNGIG------YLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQ 388 (672)
Q Consensus 317 a~~~Lg------~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~ 388 (672)
++..|- .+|..- .-.-|-++.-...|.+.++. -.|..-.|.|..+.. ..-++++.+.|++.+..-.+
T Consensus 469 vQ~rlhrSlkiWs~y~Dl-eEs~gtfestk~vYdriidLriaTPqii~NyAmfLEe----h~yfeesFk~YErgI~LFk~ 543 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADL-EESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEE----HKYFEESFKAYERGISLFKW 543 (835)
T ss_pred HHHHHHHhHHHHHHHHHH-HHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hHHHHHHHHHHHcCCccCCC
Confidence 222221 122100 00013445555667777665 478888999999988 88899999999998886544
Q ss_pred HHHHHHHHHHHcCC---CccCCHHHHHHHHHHHHHcCChhH----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHH
Q 005877 389 KAFYQLAKMFHTGV---GLKKNLHMATALYKLVAERGPWSS----LSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSN 461 (672)
Q Consensus 389 ~a~~~L~~~y~~g~---g~~~~~~~A~~~~~~a~~~~~~~a----~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~n 461 (672)
+..+.+=..|..-. -.....+.|..+|+++++..|+.. +...+..-.+-|--..|++.|++|...-.+..+..
T Consensus 544 p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~ 623 (835)
T KOG2047|consen 544 PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLD 623 (835)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHH
Confidence 33333322222100 115678999999999999888653 22333333455888999999999976655444433
Q ss_pred HHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 005877 462 AAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN----EHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ 537 (672)
Q Consensus 462 la~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~ 537 (672)
+=.+|-+.-. ..-|++. -..+|++|++.-+ .....+.+++=- ..|..++|...|.-+.+.
T Consensus 624 myni~I~kaa-----e~yGv~~-------TR~iYekaIe~Lp~~~~r~mclrFAdlEt----klGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 624 MYNIYIKKAA-----EIYGVPR-------TREIYEKAIESLPDSKAREMCLRFADLET----KLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHHHHHHHH-----HHhCCcc-------cHHHHHHHHHhCChHHHHHHHHHHHHHhh----hhhhHHHHHHHHHhhhhc
Confidence 3333322000 0001122 2234555544422 233457777766 788999999999888776
Q ss_pred CCH
Q 005877 538 SNA 540 (672)
Q Consensus 538 ~~~ 540 (672)
.+|
T Consensus 688 ~dP 690 (835)
T KOG2047|consen 688 CDP 690 (835)
T ss_pred CCC
Confidence 544
No 135
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.15 E-value=2.7e-05 Score=78.57 Aligned_cols=215 Identities=13% Similarity=0.046 Sum_probs=148.4
Q ss_pred hhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc----CCHHHHHHHHHHHH
Q 005877 215 NKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----GEPQSMEFLGEIYA 290 (672)
Q Consensus 215 ~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~ 290 (672)
.+...+..+|+++..+....... .....+...++..+... .+.++++.-++..+.. .++......|.++.
T Consensus 40 ~~~Rs~iAlg~~~~vl~ei~~~~-~~~l~av~~la~y~~~~-----~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~ 113 (290)
T PF04733_consen 40 YQYRSYIALGQYDSVLSEIKKSS-SPELQAVRLLAEYLSSP-----SDKESALEELKELLADQAGESNEIVQLLAATILF 113 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHS-TTS-SCCCHHHHHHHHHHCTS-----TTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCChhHHHHHhccCC-ChhHHHHHHHHHHHhCc-----cchHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 35566778888887776665433 33455666676665432 3666777666654432 24556677778888
Q ss_pred cCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchh
Q 005877 291 RGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKR 370 (672)
Q Consensus 291 ~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~ 370 (672)
. .+++++|++.+.+. ++.++....-.+|+. .++++.|.+.++..-+.++.....+|+..|..-.....
T Consensus 114 ~----~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~-----~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 114 H----EGDYEEALKLLHKG---GSLELLALAVQILLK-----MNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp C----CCHHHHHHCCCTTT---TCHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTT
T ss_pred H----cCCHHHHHHHHHcc---CcccHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCch
Confidence 7 89999999988875 667777666777775 56899999999998888777777777766544111136
Q ss_pred cHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcCCH-HHHHH
Q 005877 371 DVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDV-GKAFL 445 (672)
Q Consensus 371 ~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~g~~-~~A~~ 445 (672)
.+.+|...|+...+. ..+..++.++.++.. .+++++|.+.++++++.+ +++++.++..+....|+. +.+.+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~----~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~ 257 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ----LGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAER 257 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH----CT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHH
Confidence 789999999997765 356777788888887 899999999999998776 466788888888888877 55555
Q ss_pred HHHHHH
Q 005877 446 LYSRMA 451 (672)
Q Consensus 446 ~~~~a~ 451 (672)
++.+..
T Consensus 258 ~l~qL~ 263 (290)
T PF04733_consen 258 YLSQLK 263 (290)
T ss_dssp HHHHCH
T ss_pred HHHHHH
Confidence 665543
No 136
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.14 E-value=9.1e-05 Score=69.11 Aligned_cols=79 Identities=23% Similarity=0.284 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--
Q 005877 277 GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-- 349 (672)
Q Consensus 277 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~-- 349 (672)
..+.+++.+|..|.. .+++++|+.+|+++++.. .+.++..+|.++.. .|++++|+.+++++++.
T Consensus 33 ~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~p 103 (172)
T PRK02603 33 KEAFVYYRDGMSAQA----DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS-----NGEHDKALEYYHQALELNP 103 (172)
T ss_pred hhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCc
Confidence 445666777777776 777777777777777532 13566777777764 45777777777777664
Q ss_pred CCHHHHHHHHHHHHc
Q 005877 350 EEAGGHYNLGVMYYK 364 (672)
Q Consensus 350 ~~~~a~~~Lg~~y~~ 364 (672)
+++.++..+|.+|..
T Consensus 104 ~~~~~~~~lg~~~~~ 118 (172)
T PRK02603 104 KQPSALNNIAVIYHK 118 (172)
T ss_pred ccHHHHHHHHHHHHH
Confidence 356666677777665
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.12 E-value=0.00012 Score=75.60 Aligned_cols=147 Identities=11% Similarity=-0.037 Sum_probs=93.3
Q ss_pred CcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHH
Q 005877 84 AINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQ 161 (672)
Q Consensus 84 ~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~ 161 (672)
.++.+...+......... .+ ..+..++-+..+++-+.++|..+..+.. .+++++|...+...+. ++|+.
T Consensus 271 ~~~~~~~~~r~~~~~~~~---~~--~~~~~~~~~~~~~~~~aa~YG~A~~~~~----~~~~d~A~~~l~~L~~~~P~N~~ 341 (484)
T COG4783 271 SPDFQLARARIRAKYEAL---PN--QQAADLLAKRSKRGGLAAQYGRALQTYL----AGQYDEALKLLQPLIAAQPDNPY 341 (484)
T ss_pred CccHHHHHHHHHHHhccc---cc--cchHHHHHHHhCccchHHHHHHHHHHHH----hcccchHHHHHHHHHHhCCCCHH
Confidence 344555555554333211 11 2334444444447888999999998887 8899999999988665 79999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHc--
Q 005877 162 SKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK-- 239 (672)
Q Consensus 162 a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~-- 239 (672)
.+-..+.++...++..+|++.+++++...|... ....+.+..+.+.|++++||.+++.....
T Consensus 342 ~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~----------------~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 342 YLELAGDILLEANKAKEAIERLKKALALDPNSP----------------LLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc----------------HHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 999999999999999999999999987543311 11123444455555555555555544322
Q ss_pred CCHHHHHHHHHHHHhc
Q 005877 240 GNAGAMYKIGLFYYFG 255 (672)
Q Consensus 240 ~~~~a~~~Lg~~y~~~ 255 (672)
.++..+..|++.|-..
T Consensus 406 ~dp~~w~~LAqay~~~ 421 (484)
T COG4783 406 EDPNGWDLLAQAYAEL 421 (484)
T ss_pred CCchHHHHHHHHHHHh
Confidence 3555555555555443
No 138
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.12 E-value=8.6e-05 Score=68.97 Aligned_cols=93 Identities=16% Similarity=0.167 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHhC----CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--C---CHHHHHHHHHHHHcCCCcc
Q 005877 335 NYTKAKEYFEKAADN----EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--G---HQKAFYQLAKMFHTGVGLK 405 (672)
Q Consensus 335 ~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~---~~~a~~~L~~~y~~g~g~~ 405 (672)
++..+..++...++. ..+.+++++|.++.. .+++++|+.+|++++.. + .+.+++++|.++.. .
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~----~ 85 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQS----EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS----N 85 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH----c
Confidence 445555555444322 134566777777777 67777777777777654 2 12467777777776 7
Q ss_pred CCHHHHHHHHHHHHHcCC--hhHHHHHHHHHH
Q 005877 406 KNLHMATALYKLVAERGP--WSSLSRWALESY 435 (672)
Q Consensus 406 ~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~ 435 (672)
+++++|+.+|+++++..+ ..++..+|.++.
T Consensus 86 g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 86 GEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 777777777777776653 344555666655
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.11 E-value=0.0001 Score=66.52 Aligned_cols=50 Identities=18% Similarity=0.093 Sum_probs=36.4
Q ss_pred cCCHHHHHHHHHHHHHcCCh-----hHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877 405 KKNLHMATALYKLVAERGPW-----SSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (672)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~~~-----~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g 454 (672)
.++..++...+++.++..+. .+.+.+|..++..|++++|...|+++++..
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~ 78 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA 78 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 56777777777777766543 245667778888888888888888887754
No 140
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.10 E-value=4e-05 Score=66.30 Aligned_cols=98 Identities=24% Similarity=0.283 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC--C---HHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 005877 457 VAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--N---EHAALLIGDAYYYGRGTQRDYERAAEAY 531 (672)
Q Consensus 457 ~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~---~~a~~~lG~~y~~g~g~~~d~~~A~~~~ 531 (672)
...+++|..+.+ .+++++|++.+++++... + +.+++.+|.+++ ..+++++|+.+|
T Consensus 3 ~~~~~~~~~~~~----------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~ 62 (119)
T TIGR02795 3 EAYYDAALLVLK----------------AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY----AQGKYADAAKAF 62 (119)
T ss_pred HHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH----hhccHHHHHHHH
Confidence 345666766666 778999999999886643 2 578999999999 899999999999
Q ss_pred HHHHhc--C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877 532 MHARSQ--S---NAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK 578 (672)
Q Consensus 532 ~~A~~~--~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 578 (672)
++++.. + .+.+++.+|.++.. .++.++|..+++++++..|++.
T Consensus 63 ~~~~~~~p~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 63 LAVVKKYPKSPKAPDALLKLGMSLQE----LGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHHCCCCCcccHHHHHHHHHHHH----hCChHHHHHHHHHHHHHCcCCh
Confidence 999863 3 36889999999987 8999999999999999998864
No 141
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.09 E-value=0.00094 Score=66.31 Aligned_cols=251 Identities=17% Similarity=0.082 Sum_probs=160.8
Q ss_pred cCCHHHHHHHHHHHHHc-CCHHHH-HHHHHHHHcCCCCCcCCHHHHHHHHH----HHHhCCC----HHHHHHHHHHHHcC
Q 005877 296 ERNYTKALEWLTHAARQ-QLYSAY-NGIGYLYVKGYGVEKKNYTKAKEYFE----KAADNEE----AGGHYNLGVMYYKG 365 (672)
Q Consensus 296 ~~~~~~A~~~~~~a~~~-~~~~a~-~~Lg~~y~~g~g~~~~~~~~A~~~~~----~a~~~~~----~~a~~~Lg~~y~~g 365 (672)
..++++|+....+.++. ++.... ..+|..-. .+-+.+.+++++.+-- .+.+.++ -.++.+|+..+..
T Consensus 19 s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~--a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~- 95 (518)
T KOG1941|consen 19 SNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVT--AHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK- 95 (518)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccchh--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 67788888877777754 222221 12222111 1112445555554432 2333333 4577888888888
Q ss_pred CCchhcHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC----h----hHHHHH
Q 005877 366 IGVKRDVKLACKYFLVAANAG-------HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP----W----SSLSRW 430 (672)
Q Consensus 366 ~g~~~~~~~A~~~~~~A~~~~-------~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~----~----~a~~~l 430 (672)
..++.+++.+-+-.+... ......-++..+.. .+-+++++++|++|.+..+ + .....|
T Consensus 96 ---l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlg----ls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~L 168 (518)
T KOG1941|consen 96 ---LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLG----LSVFQKALESFEKALRYAHNNDDAMLELQVCVSL 168 (518)
T ss_pred ---HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhh----HHHHHHHHHHHHHHHHHhhccCCceeeeehhhhH
Confidence 888888888877655421 12344456666654 7789999999999976542 1 357788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc------CC------HHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHH--
Q 005877 431 ALESYLKGDVGKAFLLYSRMAEL------GY------EVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWW-- 496 (672)
Q Consensus 431 g~~~~~~g~~~~A~~~~~~a~~~------g~------~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~-- 496 (672)
|..+-...|++||+.+..+|++. ++ ..+++.++..|... +++-.|.++-+
T Consensus 169 gslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~----------------G~LgdA~e~C~Ea 232 (518)
T KOG1941|consen 169 GSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLL----------------GRLGDAMECCEEA 232 (518)
T ss_pred HHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHh----------------cccccHHHHHHHH
Confidence 99999999999999999999765 22 23456677777663 33333443333
Q ss_pred --HHHhCCC----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHcCC-CCCCCHH
Q 005877 497 --QASEQGN----EHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--------QSNAQAMFNLGYMHEHGQ-GLPLDLH 561 (672)
Q Consensus 497 --~a~~~~~----~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--------~~~~~a~~~Lg~~y~~g~-g~~~d~~ 561 (672)
.++..|| +..+.-+|++|. ..+|.+.|..-|+.|.. ++..+++.-.+.+++.-. ...+.-=
T Consensus 233 ~klal~~Gdra~~arc~~~~aDIyR----~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~C 308 (518)
T KOG1941|consen 233 MKLALQHGDRALQARCLLCFADIYR----SRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNC 308 (518)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHH----hcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 4677777 445668999999 88999999999999853 234667777777765510 0011224
Q ss_pred HHHHHHHHHHhcCCC
Q 005877 562 LAKRYYDQALEVDPA 576 (672)
Q Consensus 562 ~A~~~~~~A~~~~~~ 576 (672)
.|+++-++++++-..
T Consensus 309 rale~n~r~levA~~ 323 (518)
T KOG1941|consen 309 RALEFNTRLLEVASS 323 (518)
T ss_pred chhHHHHHHHHHHHH
Confidence 599999999887543
No 142
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.09 E-value=1.1e-05 Score=61.63 Aligned_cols=62 Identities=34% Similarity=0.506 Sum_probs=55.4
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877 508 LLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA 577 (672)
Q Consensus 508 ~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 577 (672)
+.+|..++ ..+++++|+..|+++++. +++.+++.||.++.. .|++++|+.+|+++++.+|++
T Consensus 1 ~~~a~~~~----~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALY----QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ----QGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHH----HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHH----HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCC
Confidence 46788999 899999999999999985 689999999999988 899999999999999999874
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.07 E-value=6.7e-05 Score=64.89 Aligned_cols=93 Identities=17% Similarity=0.158 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--C---HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC----
Q 005877 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--H---QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP---- 423 (672)
Q Consensus 353 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~---~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~---- 423 (672)
+.++.+|..+.. .+++++|++.|+++++.. + +.+.+.+|.++.. .+++++|+.+|++++...|
T Consensus 3 ~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~ 74 (119)
T TIGR02795 3 EAYYDAALLVLK----AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA----QGKYADAAKAFLAVVKKYPKSPK 74 (119)
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHCCCCCc
Confidence 445555555555 556666666665555432 1 3455556666555 5566666666666555431
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 424 -WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 424 -~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
+.++..+|.++...|++++|+.+++++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 75 APDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred ccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 234555566666666666666666665544
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.07 E-value=6.1e-05 Score=68.02 Aligned_cols=110 Identities=17% Similarity=0.093 Sum_probs=81.7
Q ss_pred CCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHcCCC
Q 005877 334 KNYTKAKEYFEKAADNE--E---AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGH-----QKAFYQLAKMFHTGVG 403 (672)
Q Consensus 334 ~~~~~A~~~~~~a~~~~--~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~-----~~a~~~L~~~y~~g~g 403 (672)
++..++...+++.++.. . ..+.+.+|.++.. .+++++|...|+.++.... +.+..+|+.++..
T Consensus 25 ~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~----~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~--- 97 (145)
T PF09976_consen 25 GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE----QGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ--- 97 (145)
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH---
Confidence 46677766666666542 2 4566778888888 8889999999988887542 3577888888887
Q ss_pred ccCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005877 404 LKKNLHMATALYKLVAERG-PWSSLSRWALESYLKGDVGKAFLLYSRMA 451 (672)
Q Consensus 404 ~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 451 (672)
.+++++|+..++.+.... .+.....+|.++...|++++|+..|++|+
T Consensus 98 -~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 98 -QGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred -cCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 889999999987643222 23456678999999999999999998873
No 145
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.06 E-value=6.3e-05 Score=78.75 Aligned_cols=104 Identities=20% Similarity=0.106 Sum_probs=73.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh--CCC
Q 005877 428 SRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE--QGN 503 (672)
Q Consensus 428 ~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~ 503 (672)
...|...+..|++++|+..|.++++. ++..++.++|.++.. .+++++|+..++++++ +.+
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~----------------~g~~~eAl~~~~~Al~l~P~~ 69 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIK----------------LGNFTEAVADANKAIELDPSL 69 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHhCcCC
Confidence 34455666667777777777777544 356666666666665 5566677777766543 456
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 005877 504 EHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHE 551 (672)
Q Consensus 504 ~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~ 551 (672)
+.+++++|.+|+ ..+++++|+.+|+++++. +++.+...++.+..
T Consensus 70 ~~a~~~lg~~~~----~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 70 AKAYLRKGTACM----KLEEYQTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred HHHHHHHHHHHH----HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 778888888888 788899999999888764 67888777777743
No 146
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.05 E-value=0.0001 Score=68.45 Aligned_cols=94 Identities=20% Similarity=0.105 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--C---CHHHHHHHHHHHHcCCCCC
Q 005877 262 DRTKALMWFSKAADK----GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--Q---LYSAYNGIGYLYVKGYGVE 332 (672)
Q Consensus 262 ~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~---~~~a~~~Lg~~y~~g~g~~ 332 (672)
++..+..++.+.++. ....+++.+|.++.. .+++++|+.+|++++.. + .+.++.++|.+|..
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~----- 84 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQS----EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS----- 84 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH-----
Confidence 445555555444322 235667888888887 78888888888888755 2 23478888888886
Q ss_pred cCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc
Q 005877 333 KKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYK 364 (672)
Q Consensus 333 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~ 364 (672)
.+++++|+.+|++++.. ....++.++|.+|..
T Consensus 85 ~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~ 118 (168)
T CHL00033 85 NGEHTKALEYYFQALERNPFLPQALNNMAVICHY 118 (168)
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 56888888888888765 356777778877763
No 147
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.04 E-value=9.5e-05 Score=77.43 Aligned_cols=94 Identities=16% Similarity=0.016 Sum_probs=50.1
Q ss_pred hhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHH
Q 005877 369 KRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAF 444 (672)
Q Consensus 369 ~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~ 444 (672)
.+++++|+..|++|++. +++.+++++|.+|.. .+++++|+..++++++..+ +.+++++|.+++..|++++|+
T Consensus 15 ~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~----~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIK----LGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45555555555555543 244555555555554 5555555555555555542 334555555555556666666
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHH
Q 005877 445 LLYSRMAEL--GYEVAQSNAAWIL 466 (672)
Q Consensus 445 ~~~~~a~~~--g~~~a~~nla~~l 466 (672)
..|+++++. ++...+..++.+.
T Consensus 91 ~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 91 AALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHH
Confidence 666555443 3445554444443
No 148
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.00 E-value=1.7e-05 Score=64.06 Aligned_cols=78 Identities=14% Similarity=0.001 Sum_probs=64.1
Q ss_pred hhhHHHHHHHHHHHH--hCC--ChHHHHHHHHHhhcCCcccCCHHHHHHHHHHH-HhCCCHHHHHHHHHHHhccCCHHHH
Q 005877 105 VRVMEEATSEVESAA--MEG--DPHARSVLGFLYGMGMMRERNKGKAFLYHHFA-AEGGNIQSKMAVAYTYLRQDMHDKA 179 (672)
Q Consensus 105 ~~~~~~A~~~~~~a~--~~~--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A-~~~~~~~a~~~Lg~~y~~~~~~~~A 179 (672)
.+++++|+.+|++.. ++. ++..++.+|.+|.. .+++++|+.++++. ..+.++...+.+|.++...|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~----~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ----QGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH----TTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----CCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 478999999999943 443 46677888999999 99999999999982 2246788999999999999999999
Q ss_pred HHHHHHH
Q 005877 180 VKLYAEL 186 (672)
Q Consensus 180 ~~~y~~a 186 (672)
++.|+++
T Consensus 78 i~~l~~~ 84 (84)
T PF12895_consen 78 IKALEKA 84 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9999874
No 149
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.00 E-value=0.001 Score=68.99 Aligned_cols=149 Identities=16% Similarity=0.129 Sum_probs=116.3
Q ss_pred hCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHH
Q 005877 156 EGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEY 235 (672)
Q Consensus 156 ~~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~ 235 (672)
+++-..+++..+..+...+++++|++.++.++...|.+. ....-.+.++...++.++|++.+++
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~----------------~~~~~~~~i~~~~nk~~~A~e~~~k 365 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP----------------YYLELAGDILLEANKAKEAIERLKK 365 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCChHHHHHHHHH
Confidence 367888999999999999999999999999887654321 1123467888899999999999999
Q ss_pred HHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH
Q 005877 236 QAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR 311 (672)
Q Consensus 236 aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 311 (672)
+... +.+...+++|+.|+.++ ++.+|+..++.... +.++..+..|+..|.. .|+..+|..-+.
T Consensus 366 al~l~P~~~~l~~~~a~all~~g-----~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~----~g~~~~a~~A~A---- 432 (484)
T COG4783 366 ALALDPNSPLLQLNLAQALLKGG-----KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE----LGNRAEALLARA---- 432 (484)
T ss_pred HHhcCCCccHHHHHHHHHHHhcC-----ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH----hCchHHHHHHHH----
Confidence 8655 56888899999999884 88899999888876 4788899999999988 777666654443
Q ss_pred cCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC
Q 005877 312 QQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN 349 (672)
Q Consensus 312 ~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~ 349 (672)
..|.. .|++++|+..+.++-+.
T Consensus 433 -----------E~~~~-----~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 433 -----------EGYAL-----AGRLEQAIIFLMRASQQ 454 (484)
T ss_pred -----------HHHHh-----CCCHHHHHHHHHHHHHh
Confidence 33332 46888888888888665
No 150
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.99 E-value=9.4e-05 Score=71.95 Aligned_cols=105 Identities=19% Similarity=0.160 Sum_probs=80.4
Q ss_pred HHHHHcCCCchhcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHH
Q 005877 359 GVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALES 434 (672)
Q Consensus 359 g~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~ 434 (672)
|.-..+ .++|.+|+..|.+|++.. ++..+.+-+..|.. .+.++.|++-++.++..+| +.+|.+||.+|
T Consensus 88 GN~~m~----~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~----Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 88 GNKLMK----NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSK----LGEYEDAVKDCESALSIDPHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHH----hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH----hcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 444455 678888888888888865 56666677777877 8888888888888888885 56788889999
Q ss_pred HhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCC
Q 005877 435 YLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGE 471 (672)
Q Consensus 435 ~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~ 471 (672)
+.+|++++|+..|+++++. .++....||.+.-.++++
T Consensus 160 ~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 9899999999999999655 477777777666555433
No 151
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.98 E-value=0.0014 Score=64.64 Aligned_cols=170 Identities=11% Similarity=0.039 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CHH
Q 005877 388 QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-----WSSLSRWALESYLKGDVGKAFLLYSRMAELG-----YEV 457 (672)
Q Consensus 388 ~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g-----~~~ 457 (672)
+...+..|.-+.. .+++++|+..|++++...| ..+.+++|.+++..+++++|+.++++.++.. -+.
T Consensus 32 ~~~~Y~~A~~~~~----~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 32 PSEIYATAQQKLQ----DGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence 3444444444443 4555555555555555443 1233455555555555555555555554431 233
Q ss_pred HHHHHHHHHHHhCCCCc--ccCCCCCCCchHhHHHHHHHHHHHHhCCC-------------------HHHHHHHHHHHHh
Q 005877 458 AQSNAAWILDKYGEGSM--CMGESGFCTDAERHQCAHSLWWQASEQGN-------------------EHAALLIGDAYYY 516 (672)
Q Consensus 458 a~~nla~~l~~~~~~~~--~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-------------------~~a~~~lG~~y~~ 516 (672)
+++.+|.+....+.+++ +........++....+|+..++.-++.-+ +.--+.+|..|+
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~- 186 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYT- 186 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 44444444322111100 11111222334445666666665444321 112346788888
Q ss_pred CCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 005877 517 GRGTQRDYERAAEAYMHARSQ-----SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQ 569 (672)
Q Consensus 517 g~g~~~d~~~A~~~~~~A~~~-----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 569 (672)
..++|.-|+.-++..++. ..++|++.|+..|.. .|..++|..+...
T Consensus 187 ---~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~----lg~~~~a~~~~~~ 237 (243)
T PRK10866 187 ---KRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQ----LQLNAQADKVAKI 237 (243)
T ss_pred ---HcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH----cCChHHHHHHHHH
Confidence 789999999999999874 357899999999977 7788888877653
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.98 E-value=8.4e-05 Score=60.47 Aligned_cols=94 Identities=31% Similarity=0.318 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 005877 459 QSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS 536 (672)
Q Consensus 459 ~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~ 536 (672)
+.++|.++.. .+++++|+.+++++++.. +..+++.+|.++. ..+++++|+.+++++++
T Consensus 3 ~~~~a~~~~~----------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~ 62 (100)
T cd00189 3 LLNLGNLYYK----------------LGDYDEALEYYEKALELDPDNADAYYNLAAAYY----KLGKYEEALEDYEKALE 62 (100)
T ss_pred HHHHHHHHHH----------------HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 4566766665 778999999999887654 4678889999999 78999999999999987
Q ss_pred c--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877 537 Q--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA 576 (672)
Q Consensus 537 ~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 576 (672)
. .++.+++.+|.++.. .+++++|..+++++++.+|.
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 63 LDPDNAKAYYNLGLAYYK----LGKYEEALEAYEKALELDPN 100 (100)
T ss_pred CCCcchhHHHHHHHHHHH----HHhHHHHHHHHHHHHccCCC
Confidence 4 566789999999887 78999999999999988763
No 153
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.0015 Score=62.10 Aligned_cols=72 Identities=25% Similarity=0.355 Sum_probs=58.5
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877 500 EQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHAR--SQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA 576 (672)
Q Consensus 500 ~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~--~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 576 (672)
-.+|.++|..|+.+|. ..++|.+|.-||++-+ .+-++...-.||.+++. .|..-|+..|.+||.+|++++|.
T Consensus 150 F~~D~EAW~eLaeiY~----~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt-~gg~eN~~~arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 150 FMNDQEAWHELAEIYL----SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYT-QGGAENLELARKYYERALKLNPK 223 (289)
T ss_pred hcCcHHHHHHHHHHHH----hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHhChH
Confidence 4578888999999999 8899999999999974 45778888888887765 23367899999999999999883
No 154
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.00081 Score=62.91 Aligned_cols=190 Identities=22% Similarity=0.238 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHH
Q 005877 228 EAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLT 307 (672)
Q Consensus 228 ~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 307 (672)
++.++..++..+..+..-+. ++.| ...+++|.+.|.++.+ +|.- .+++..|=..|.
T Consensus 3 ~a~~l~k~AEkK~~~s~gF~----lfgg----~~k~eeAadl~~~Aan------------~ykl----aK~w~~AG~afl 58 (288)
T KOG1586|consen 3 DAVQLMKKAEKKLNGSGGFL----LFGG----SNKYEEAAELYERAAN------------MYKL----AKNWSAAGDAFL 58 (288)
T ss_pred cHHHHHHHHHHhcccCCccc----ccCC----CcchHHHHHHHHHHHH------------HHHH----HHhHHHHHHHHH
Confidence 34555555555544433332 2222 1489999999998854 4443 556666666666
Q ss_pred HHHHc----C----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCchhc
Q 005877 308 HAARQ----Q----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVKRD 371 (672)
Q Consensus 308 ~a~~~----~----~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~ 371 (672)
++++. + -...+...+.+|.. .++++|+.+++++++. |. +.-+..||.+|... ..|
T Consensus 59 kaA~~h~k~~skhDaat~YveA~~cykk------~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsd---l~d 129 (288)
T KOG1586|consen 59 KAADLHLKAGSKHDAATTYVEAANCYKK------VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESD---LQD 129 (288)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhhc------cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhh---HHH
Confidence 66542 1 34456677788864 4899999999999875 32 33456789999883 589
Q ss_pred HHHHHHHHHHHHHc--C-C-----HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC--Ch----h---HHHHHHHHH
Q 005877 372 VKLACKYFLVAANA--G-H-----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PW----S---SLSRWALES 434 (672)
Q Consensus 372 ~~~A~~~~~~A~~~--~-~-----~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~----~---a~~~lg~~~ 434 (672)
+++|+.+|++|.+- + . ...+...+..-. ..++|.+|+..|++++... +. . -++.-|..+
T Consensus 130 ~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa----~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLCh 205 (288)
T KOG1586|consen 130 FEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAA----QLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCH 205 (288)
T ss_pred HHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHh
Confidence 99999999999872 2 1 123333443333 3789999999999987654 21 1 234455666
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 005877 435 YLKGDVGKAFLLYSRMAELG 454 (672)
Q Consensus 435 ~~~g~~~~A~~~~~~a~~~g 454 (672)
.-..|.-.+...+++-.+..
T Consensus 206 l~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 206 LCKADEVNAQRALEKYQELD 225 (288)
T ss_pred HhcccHHHHHHHHHHHHhcC
Confidence 66666665555555554443
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.95 E-value=9.7e-05 Score=60.09 Aligned_cols=90 Identities=27% Similarity=0.357 Sum_probs=51.0
Q ss_pred HHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHH
Q 005877 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRW 430 (672)
Q Consensus 355 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l 430 (672)
++.+|.++.. .+++++|+.+++++++.. +..+++.+|.++.. .+++++|+.+++++++..+ ...+..+
T Consensus 3 ~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 74 (100)
T cd00189 3 LLNLGNLYYK----LGDYDEALEYYEKALELDPDNADAYYNLAAAYYK----LGKYEEALEDYEKALELDPDNAKAYYNL 74 (100)
T ss_pred HHHHHHHHHH----HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCCcchhHHHHH
Confidence 4555555555 556666666666655432 33455556666555 5566666666666655543 2345555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 005877 431 ALESYLKGDVGKAFLLYSRMAE 452 (672)
Q Consensus 431 g~~~~~~g~~~~A~~~~~~a~~ 452 (672)
|..+...|++++|..++.++.+
T Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 75 GLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHhHHHHHHHHHHHHc
Confidence 6666666666666666665544
No 156
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.95 E-value=2.2e-05 Score=59.88 Aligned_cols=61 Identities=15% Similarity=0.086 Sum_probs=52.3
Q ss_pred HHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Q 005877 128 SVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVN 192 (672)
Q Consensus 128 ~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~ 192 (672)
+.+|..+.. .+++++|+..|+++++ ++++.+++.+|.++...|++++|+.+|+++++..|.
T Consensus 1 ~~~a~~~~~----~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 1 YALARALYQ----QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHH----CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred ChHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 457888887 8999999999999987 578999999999999999999999999999886543
No 157
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.93 E-value=0.00016 Score=62.12 Aligned_cols=58 Identities=22% Similarity=0.194 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005877 390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-----WSSLSRWALESYLKGDVGKAFLLYSRMA 451 (672)
Q Consensus 390 a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 451 (672)
+.|++|.++.. .|+.++|+.+|+++++.+. ..++..+|..+...|++++|+..+++++
T Consensus 3 ~~~~~A~a~d~----~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 3 ALYELAWAHDS----LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred hHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555554 5555555555555555441 1234445555555555555555554443
No 158
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.91 E-value=0.011 Score=63.91 Aligned_cols=317 Identities=16% Similarity=0.084 Sum_probs=170.7
Q ss_pred hhhHHHHHHHHHHHHhCC-ChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 005877 105 VRVMEEATSEVESAAMEG-DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLY 183 (672)
Q Consensus 105 ~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~~~~~~~A~~~y 183 (672)
.+..++|+.+....-+.. -...+-.++.-|.+ .+|++.|.++|.++-...+. -.+|.+.|.++.|.+.-
T Consensus 745 akew~kai~ildniqdqk~~s~yy~~iadhyan----~~dfe~ae~lf~e~~~~~da------i~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKTASGYYGEIADHYAN----KGDFEIAEELFTEADLFKDA------IDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhhhhHhHHHHhhhhccccccchHHHHHhcc----chhHHHHHHHHHhcchhHHH------HHHHhccccHHHHHHHH
Confidence 467889999988755553 34456678888888 89999999999886443322 23455556666555443
Q ss_pred HHHHHHHHh--hhhccCCCCcccchhc-ccCchhhhhHhhhccCChHHHHHHHHHH---------HHcCC----HHHHHH
Q 005877 184 AELAEIAVN--SFLISKDSPVIEPIRI-HNGAEENKGALRKSRGEDDEAFQILEYQ---------AQKGN----AGAMYK 247 (672)
Q Consensus 184 ~~a~~~~~~--~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~g~~~~Ai~~~~~a---------a~~~~----~~a~~~ 247 (672)
.+....... .+... ...+ .-+....-..+|..-|.+++||+.|++- ...-+ .+....
T Consensus 815 ~e~~~~e~t~~~yiak-------aedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~ 887 (1636)
T KOG3616|consen 815 EECHGPEATISLYIAK-------AEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKH 887 (1636)
T ss_pred HHhcCchhHHHHHHHh-------HHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHH
Confidence 332110000 00000 0000 0011112233455667777777777762 22212 345556
Q ss_pred HHHHHHhcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC------CCCcCCHHHHHHHHHHHHHcC-CH--HHH
Q 005877 248 IGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARG------AGVERNYTKALEWLTHAARQQ-LY--SAY 318 (672)
Q Consensus 248 Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g------~g~~~~~~~A~~~~~~a~~~~-~~--~a~ 318 (672)
+|.-|... ++.+.|.+.|-++-+-..+.-+|.-..++... .| -.+.++-.. |-.+-..| ++ ..+
T Consensus 888 f~~e~e~~-----g~lkaae~~flea~d~kaavnmyk~s~lw~dayriakteg-g~n~~k~v~-flwaksiggdaavkll 960 (1636)
T KOG3616|consen 888 FAKELEAE-----GDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEG-GANAEKHVA-FLWAKSIGGDAAVKLL 960 (1636)
T ss_pred HHHHHHhc-----cChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccc-cccHHHHHH-HHHHHhhCcHHHHHHH
Confidence 67666555 58999988887763321111122222222110 00 011111111 11111112 22 234
Q ss_pred HHHHHHHHc-CCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCH--------H
Q 005877 319 NGIGYLYVK-GYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQ--------K 389 (672)
Q Consensus 319 ~~Lg~~y~~-g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~--------~ 389 (672)
+..|.+... ...-+.+.++-|.++-+-+++..-+..+..++..+.. .|.+++|-+.|-.|++.+.. .
T Consensus 961 nk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~led----egk~edaskhyveaiklntynitwcqavp 1036 (1636)
T KOG3616|consen 961 NKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLED----EGKFEDASKHYVEAIKLNTYNITWCQAVP 1036 (1636)
T ss_pred HhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhh----ccchhhhhHhhHHHhhcccccchhhhccc
Confidence 555554321 0112345788888888888888889999999999988 89999999999999886531 1
Q ss_pred HHHHHHHHHHcCCCccCCHHHHHHHHH---------HHHHcCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877 390 AFYQLAKMFHTGVGLKKNLHMATALYK---------LVAERGP----WSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (672)
Q Consensus 390 a~~~L~~~y~~g~g~~~~~~~A~~~~~---------~a~~~~~----~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g 454 (672)
+.+.+-.+-. -...++|+..|- ++++... ++.+...+......||+.+|...+.+|-.++
T Consensus 1037 srfd~e~ir~-----gnkpe~av~mfi~dndwa~aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fllrankp~ 1109 (1636)
T KOG3616|consen 1037 SRFDAEFIRA-----GNKPEEAVEMFIHDNDWAAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRANKPD 1109 (1636)
T ss_pred chhhHHHHHc-----CCChHHHHHHhhhcccHHHHHHHHHhhChhhhHHHHhhhhhccccccchhhhhhheeecCCCc
Confidence 2222222211 235566666653 2222222 2334444455567788888888877775554
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.90 E-value=3.6e-05 Score=62.19 Aligned_cols=75 Identities=15% Similarity=0.076 Sum_probs=34.7
Q ss_pred hcHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcCCHHHH
Q 005877 370 RDVKLACKYFLVAANAGH----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKA 443 (672)
Q Consensus 370 ~~~~~A~~~~~~A~~~~~----~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~g~~~~A 443 (672)
+++++|+.+|++.++..+ ...++++|.+|.. .+++++|+.++++ .+.+ ++...+.+|.+++..|++++|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~----~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ----QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH----TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 345555555555444221 2333444555554 5555555555554 2222 233444445555555555555
Q ss_pred HHHHHH
Q 005877 444 FLLYSR 449 (672)
Q Consensus 444 ~~~~~~ 449 (672)
+..|++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 555554
No 160
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.90 E-value=0.0013 Score=63.15 Aligned_cols=153 Identities=18% Similarity=0.194 Sum_probs=91.4
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC---
Q 005877 278 EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--- 349 (672)
Q Consensus 278 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--- 349 (672)
.+..++..|..... .|++.+|+..|++....- -+.+...+|..+.. .+++++|+..|++-++.
T Consensus 4 ~~~~lY~~a~~~~~----~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~-----~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 4 TAEALYQKALEALQ----QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK-----QGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp -HHHHHHHHHHHHH----CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHH-TT
T ss_pred CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHCCC
Confidence 34555666666666 667777777777666531 34566666666664 45677777777666654
Q ss_pred --CCHHHHHHHHHHHHcC-------CCchhcHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHcC
Q 005877 350 --EEAGGHYNLGVMYYKG-------IGVKRDVKLACKYFLVAANAGH-------------------QKAFYQLAKMFHTG 401 (672)
Q Consensus 350 --~~~~a~~~Lg~~y~~g-------~g~~~~~~~A~~~~~~A~~~~~-------------------~~a~~~L~~~y~~g 401 (672)
..+.+++.+|.++... ..-.....+|+..|+..++.-+ ..--+.+|..|..
T Consensus 75 ~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~- 153 (203)
T PF13525_consen 75 SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYK- 153 (203)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 2345666666665431 0113445567777777665221 1223456667776
Q ss_pred CCccCCHHHHHHHHHHHHHcCC-----hhHHHHHHHHHHhcCCHHHH
Q 005877 402 VGLKKNLHMATALYKLVAERGP-----WSSLSRWALESYLKGDVGKA 443 (672)
Q Consensus 402 ~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~lg~~~~~~g~~~~A 443 (672)
.+.+..|+..++.+++.-| ..++..++..+...|..+.|
T Consensus 154 ---~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 154 ---RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp ---TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred ---cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 7888899999999888764 34677788888888877644
No 161
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.89 E-value=0.0014 Score=62.93 Aligned_cols=168 Identities=17% Similarity=0.082 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--
Q 005877 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG-----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-- 423 (672)
Q Consensus 351 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-- 423 (672)
.+...+..|..++. .|++.+|+..|++..... -+.+.+.+|..+.. .+++++|+..+++.++..|
T Consensus 4 ~~~~lY~~a~~~~~----~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~----~~~y~~A~~~~~~fi~~yP~~ 75 (203)
T PF13525_consen 4 TAEALYQKALEALQ----QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK----QGDYEEAIAAYERFIKLYPNS 75 (203)
T ss_dssp -HHHHHHHHHHHHH----CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCC
Confidence 34455555665555 566666666666665421 24566666666665 5666666666666665543
Q ss_pred ---hhHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHH
Q 005877 424 ---WSSLSRWALESYLKG-----------DVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQ 489 (672)
Q Consensus 424 ---~~a~~~lg~~~~~~g-----------~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~ 489 (672)
+.+++.+|..++... ...+|+..|+..++.-.... -..
T Consensus 76 ~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~----------------------------y~~ 127 (203)
T PF13525_consen 76 PKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE----------------------------YAE 127 (203)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST----------------------------THH
T ss_pred cchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch----------------------------HHH
Confidence 224555555544321 22345555555544311000 011
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CC---HHHHHHHHHHHHcCCCCCCCHHHH
Q 005877 490 CAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SN---AQAMFNLGYMHEHGQGLPLDLHLA 563 (672)
Q Consensus 490 ~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~---~~a~~~Lg~~y~~g~g~~~d~~~A 563 (672)
+|...... +...-+.--+.+|..|+ ..+.+.-|+..++..++. +. .+++..|...|.+ .|+.+.|
T Consensus 128 ~A~~~l~~-l~~~la~~e~~ia~~Y~----~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~----l~~~~~a 197 (203)
T PF13525_consen 128 EAKKRLAE-LRNRLAEHELYIARFYY----KRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYK----LGLKQAA 197 (203)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHH----CTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH----TT-HHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHH----HcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH----hCChHHH
Confidence 11111110 00111223367899999 889999999999999884 32 5778888888876 5555533
No 162
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.89 E-value=0.00015 Score=72.04 Aligned_cols=86 Identities=21% Similarity=0.287 Sum_probs=75.5
Q ss_pred hHhHHHHHHHHHHHHhC--CC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--C---CHHHHHHHHHHHHcCC
Q 005877 485 AERHQCAHSLWWQASEQ--GN---EHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--S---NAQAMFNLGYMHEHGQ 554 (672)
Q Consensus 485 ~~~~~~A~~~~~~a~~~--~~---~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~---~~~a~~~Lg~~y~~g~ 554 (672)
.+++++|+..|+..++. ++ +++++.+|.+|+ ..+++++|+.+|++.++. + .+++++.+|.++..
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~----~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~-- 229 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNY----NKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD-- 229 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH--
Confidence 45899999999987654 44 689999999999 899999999999999863 3 58999999999986
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCc
Q 005877 555 GLPLDLHLAKRYYDQALEVDPAAK 578 (672)
Q Consensus 555 g~~~d~~~A~~~~~~A~~~~~~~~ 578 (672)
.+|.++|+..|++.++..|++.
T Consensus 230 --~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 230 --KGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred --cCCHHHHHHHHHHHHHHCcCCH
Confidence 7999999999999999998865
No 163
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.87 E-value=0.00028 Score=68.77 Aligned_cols=102 Identities=25% Similarity=0.102 Sum_probs=62.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC--H
Q 005877 429 RWALESYLKGDVGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN--E 504 (672)
Q Consensus 429 ~lg~~~~~~g~~~~A~~~~~~a~~~g--~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~ 504 (672)
.-|.-..+.++|.+|+..|.+|++.. +++-+.|-|-.|.+ .+.++.|++--+.++..++ .
T Consensus 86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~----------------Lg~~~~AVkDce~Al~iDp~ys 149 (304)
T KOG0553|consen 86 NEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSK----------------LGEYEDAVKDCESALSIDPHYS 149 (304)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH----------------hcchHHHHHHHHHHHhcChHHH
Confidence 34455555566666666666665543 44445555555555 4455556666555544443 5
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHH
Q 005877 505 HAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMH 550 (672)
Q Consensus 505 ~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y 550 (672)
.++.+||..|+ ..+++.+|++.|++|++. ++....-+|.+.-
T Consensus 150 kay~RLG~A~~----~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 150 KAYGRLGLAYL----ALGKYEEAIEAYKKALELDPDNESYKSNLKIAE 193 (304)
T ss_pred HHHHHHHHHHH----ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHH
Confidence 56777888887 778888888888888664 5666666666553
No 164
>PRK11906 transcriptional regulator; Provisional
Probab=97.86 E-value=0.00076 Score=70.27 Aligned_cols=161 Identities=12% Similarity=0.056 Sum_probs=122.3
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHH---Hc--CCHHHHHHHHHHHHcC----CCCCcCCHHHHHHHHHHHHhCC--C
Q 005877 283 EFLGEIYARGAGVERNYTKALEWLTHAA---RQ--QLYSAYNGIGYLYVKG----YGVEKKNYTKAKEYFEKAADNE--E 351 (672)
Q Consensus 283 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~---~~--~~~~a~~~Lg~~y~~g----~g~~~~~~~~A~~~~~~a~~~~--~ 351 (672)
+..|..... .+.+.+.+.|+.+|.+++ +. +.+.++..++.++... ......+..+|...-++|++.+ |
T Consensus 259 ylrg~~~~~-~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D 337 (458)
T PRK11906 259 MLAGKKELY-DFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD 337 (458)
T ss_pred HHHHHHHhh-ccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 444544432 223678899999999999 43 4688888888887643 3223457889999999999875 8
Q ss_pred HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChh---H
Q 005877 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS---S 426 (672)
Q Consensus 352 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~---a 426 (672)
+.++..+|.+... .++++.|..+|++|... +.+.+++..|.+... .|+.++|++..+++++.+|-. .
T Consensus 338 a~a~~~~g~~~~~----~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~----~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 338 GKILAIMGLITGL----SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH----NEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred HHHHHHHHHHHHh----hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCchhhHHH
Confidence 9999999998777 77899999999999774 578999999998887 899999999999999999854 3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005877 427 LSRWALESYLKGDVGKAFLLYSRMAE 452 (672)
Q Consensus 427 ~~~lg~~~~~~g~~~~A~~~~~~a~~ 452 (672)
...+-...|-..-.+.|+..|-+-.+
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 410 VIKECVDMYVPNPLKNNIKLYYKETE 435 (458)
T ss_pred HHHHHHHHHcCCchhhhHHHHhhccc
Confidence 44444434445567778877765443
No 165
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.83 E-value=0.00061 Score=74.49 Aligned_cols=124 Identities=15% Similarity=0.033 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh----CCCHHHHHHHHH
Q 005877 439 DVGKAFLLYSRMAE--LGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE----QGNEHAALLIGD 512 (672)
Q Consensus 439 ~~~~A~~~~~~a~~--~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lG~ 512 (672)
+..+|+.+|++|++ +++..++..+++++..... ....+..+..++....+++.. +.++.++..+|.
T Consensus 357 ~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~--------~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~ 428 (517)
T PRK10153 357 SLNKASDLLEEILKSEPDFTYAQAEKALADIVRHS--------QQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAV 428 (517)
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHh--------cCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHH
Confidence 36677777777754 4566666666665533110 001223456667777766433 345677888999
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877 513 AYYYGRGTQRDYERAAEAYMHARSQ-SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK 578 (672)
Q Consensus 513 ~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 578 (672)
++. ..+++++|...+++|++. .+..++..+|.+++. .|+.++|..+|++|+.++|...
T Consensus 429 ~~~----~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~----~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 429 QAL----VKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYEL----KGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHH----hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCc
Confidence 988 789999999999999886 468899999999987 8999999999999999999854
No 166
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.83 E-value=0.00016 Score=71.80 Aligned_cols=99 Identities=16% Similarity=0.143 Sum_probs=83.1
Q ss_pred CcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh--CCC---hHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--
Q 005877 84 AINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAM--EGD---PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE-- 156 (672)
Q Consensus 84 ~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~--~~~---~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~-- 156 (672)
+....|..+...+.. .+++++|+..|++... |++ +.+++.||.+|.. .+++++|+.+|++.+.
T Consensus 141 ~e~~~Y~~A~~l~~~------~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~----~g~~~~A~~~f~~vv~~y 210 (263)
T PRK10803 141 DANTDYNAAIALVQD------KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN----KGKKDDAAYYFASVVKNY 210 (263)
T ss_pred CHHHHHHHHHHHHHh------cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHC
Confidence 345677777776432 4889999999999554 455 6899999999999 9999999999999986
Q ss_pred CC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Q 005877 157 GG---NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVN 192 (672)
Q Consensus 157 ~~---~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~ 192 (672)
++ .+++++.+|.++...|++++|+.+|+++++..|.
T Consensus 211 P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 211 PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred CCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 44 5799999999999999999999999999886543
No 167
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.78 E-value=5.6e-05 Score=60.04 Aligned_cols=62 Identities=26% Similarity=0.306 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc----C-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhc
Q 005877 504 EHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ----S-----NAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEV 573 (672)
Q Consensus 504 ~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~----~-----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 573 (672)
+.++.++|.+|. ..+++++|+.+|++|++. + -+.+++++|.+|.. .||+++|++++++|+++
T Consensus 5 a~~~~~la~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYR----ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR----LGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHH----HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH----TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Confidence 457889999999 899999999999999753 2 25689999999988 89999999999999874
No 168
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.014 Score=60.56 Aligned_cols=111 Identities=17% Similarity=0.097 Sum_probs=76.5
Q ss_pred CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH---cC---C-----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 005877 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD---KG---E-----PQSMEFLGEIYARGAGVERNYTKALEWLTH 308 (672)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~---~~---~-----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 308 (672)
+.+.+.+.-.+.++-. +|+.+|.+.+...-- .| . -...++||-|+.. .+.|.-+..+|.+
T Consensus 238 ~s~~~l~LKsq~eY~~-----gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~----~~~y~~~~~~F~k 308 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAH-----GNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQ----LGCYQASSVLFLK 308 (696)
T ss_pred CCcHHHHHHHHHHHHh-----cchHHHHHHHHhcccccccCccccchhhhheeecCcceEeee----hhhHHHHHHHHHH
Confidence 5666666667766655 488888887765421 12 1 1233678888877 8888888888888
Q ss_pred HHHc--------------------CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc
Q 005877 309 AARQ--------------------QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYK 364 (672)
Q Consensus 309 a~~~--------------------~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~ 364 (672)
|+.. ...+..+++|..|++ .|.+-.|.++|.+++.. .+|..|..|+.+...
T Consensus 309 AL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh-----~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 309 ALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLH-----SGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHh-----cCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 8851 134567788888876 66888888888888775 578888888866543
No 169
>PRK11906 transcriptional regulator; Provisional
Probab=97.70 E-value=0.0017 Score=67.78 Aligned_cols=133 Identities=13% Similarity=0.057 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 005877 440 VGKAFLLYSRMA-----ELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ--GNEHAALLIGD 512 (672)
Q Consensus 440 ~~~A~~~~~~a~-----~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lG~ 512 (672)
.+.|+.+|.+|+ ++++..++..+|+++.... ..| ......+..+|...-++|++. .|+.++..+|.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~----~~g---~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~ 346 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLA----LHG---KSELELAAQKALELLDYVSDITTVDGKILAIMGL 346 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHH----Hhc---CCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 345555666665 3456777777777765520 111 222467888999999998776 46888899999
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHHHH
Q 005877 513 AYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPVTLALTSLWI 590 (672)
Q Consensus 513 ~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~~~~~~~~~ 590 (672)
++. -.++++.|..+|++|.. ++.+.+++..|++... .|+.+.|.+..++|++++|--.- ..+.++|+
T Consensus 347 ~~~----~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~----~G~~~~a~~~i~~alrLsP~~~~---~~~~~~~~ 415 (458)
T PRK11906 347 ITG----LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH----NEKIEEARICIDKSLQLEPRRRK---AVVIKECV 415 (458)
T ss_pred HHH----hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCchhhH---HHHHHHHH
Confidence 887 67889999999999976 5789999999999876 89999999999999999997543 33455555
No 170
>PRK15331 chaperone protein SicA; Provisional
Probab=97.68 E-value=0.00078 Score=60.40 Aligned_cols=92 Identities=15% Similarity=0.127 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHH--HhC
Q 005877 426 SLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQA--SEQ 501 (672)
Q Consensus 426 a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a--~~~ 501 (672)
..+..|..++..|++++|...|+-..-. .++.-...||-++.. ++++++|+..|..+ ...
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~----------------~k~y~~Ai~~Y~~A~~l~~ 102 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL----------------KKQFQKACDLYAVAFTLLK 102 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHccc
Confidence 4566677777777777777777765333 344444455555554 55666666666543 334
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 005877 502 GNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ 537 (672)
Q Consensus 502 ~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~ 537 (672)
+|+.+.+..|.||. ..++...|+.+|+.+++.
T Consensus 103 ~dp~p~f~agqC~l----~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 103 NDYRPVFFTGQCQL----LMRKAAKARQCFELVNER 134 (165)
T ss_pred CCCCccchHHHHHH----HhCCHHHHHHHHHHHHhC
Confidence 55666666666666 666666666666666653
No 171
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.67 E-value=0.0052 Score=56.98 Aligned_cols=202 Identities=17% Similarity=0.093 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChh--HHH
Q 005877 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS--SLS 428 (672)
Q Consensus 353 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~--a~~ 428 (672)
..++.-|.+|.+ .|=..-|..-|.+++. +.-+...+.||..+.. .+|++.|.+.|....|.+|.. +..
T Consensus 66 ~l~fERGvlYDS----lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~----a~~fdaa~eaFds~~ELDp~y~Ya~l 137 (297)
T COG4785 66 QLLFERGVLYDS----LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ----AGNFDAAYEAFDSVLELDPTYNYAHL 137 (297)
T ss_pred HHHHHhcchhhh----hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHh----cccchHHHHHhhhHhccCCcchHHHh
Confidence 344455777777 7777778888887755 5678999999998887 899999999999999998754 677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHH-
Q 005877 429 RWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAA- 507 (672)
Q Consensus 429 ~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~- 507 (672)
+.|..+|--|++.-|..-+.+--+.+....... -|+|-. +. .-+..+|..-+.+..+..+.+-|
T Consensus 138 NRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~-LWLYl~---------E~-----k~dP~~A~tnL~qR~~~~d~e~WG 202 (297)
T COG4785 138 NRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRS-LWLYLN---------EQ-----KLDPKQAKTNLKQRAEKSDKEQWG 202 (297)
T ss_pred ccceeeeecCchHhhHHHHHHHHhcCCCChHHH-HHHHHH---------Hh-----hCCHHHHHHHHHHHHHhccHhhhh
Confidence 889999999999999998888766553322222 244432 11 22566777666655555443332
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcchh
Q 005877 508 LLIGDAYYYGRGTQRDYERAAEAYMHARSQ------SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPV 581 (672)
Q Consensus 508 ~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~ 581 (672)
.++-..|. .+-..+.+.+-.+.-++. .-.++.+.||..|.. .|+.+.|...|+.|+..+--..+.-
T Consensus 203 ~~iV~~yL----gkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~----~G~~~~A~~LfKLaiannVynfVE~ 274 (297)
T COG4785 203 WNIVEFYL----GKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLS----LGDLDEATALFKLAVANNVYNFVEH 274 (297)
T ss_pred HHHHHHHH----hhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHhHHHHHHH
Confidence 23333333 122222222222221111 125778999999987 8999999999999988664444433
Q ss_pred HHHH
Q 005877 582 TLAL 585 (672)
Q Consensus 582 ~~~~ 585 (672)
-.++
T Consensus 275 RyA~ 278 (297)
T COG4785 275 RYAL 278 (297)
T ss_pred HHHH
Confidence 3333
No 172
>PRK15331 chaperone protein SicA; Provisional
Probab=97.67 E-value=0.0016 Score=58.40 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=42.8
Q ss_pred cCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCH
Q 005877 333 KKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNL 408 (672)
Q Consensus 333 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~ 408 (672)
+|++++|...|+-..-. .+++-++.||.++.. .+++++|+..|..|.. .+++...++.|.+|.. .++.
T Consensus 50 ~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~----~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~----l~~~ 121 (165)
T PRK15331 50 QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL----KKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL----MRKA 121 (165)
T ss_pred CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH----hCCH
Confidence 34555555555555433 244445555555555 5555555555555533 3345555555555554 5555
Q ss_pred HHHHHHHHHHHH
Q 005877 409 HMATALYKLVAE 420 (672)
Q Consensus 409 ~~A~~~~~~a~~ 420 (672)
++|...|+.+++
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 555555555555
No 173
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.66 E-value=0.00015 Score=57.54 Aligned_cols=59 Identities=36% Similarity=0.554 Sum_probs=29.6
Q ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC----C-----CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH
Q 005877 317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----E-----EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN 384 (672)
Q Consensus 317 a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 384 (672)
+++++|.+|.. .|++++|+.+|+++++. + .+.+++++|.+|.. .+++++|+++|+++++
T Consensus 7 ~~~~la~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRE-----LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR----LGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHH-----TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH----TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence 34455555543 34555555555555432 1 13345555555555 5556666666655543
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.62 E-value=0.0023 Score=70.11 Aligned_cols=135 Identities=13% Similarity=0.078 Sum_probs=87.8
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCC---cCCHHHHHHHHHHHHhC----CC
Q 005877 281 SMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVE---KKNYTKAKEYFEKAADN----EE 351 (672)
Q Consensus 281 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~---~~~~~~A~~~~~~a~~~----~~ 351 (672)
.++.-|.-|... +..++..+|+.+|++|++. +++.++-.++.+|....+.. ..+..++....+++... .+
T Consensus 341 ~~~lrg~~~~~~-~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~ 419 (517)
T PRK10153 341 TLFYQAHHYLNS-GDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVL 419 (517)
T ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCC
Confidence 334445444431 1245677888888888764 46777777766664321111 11344555666665442 35
Q ss_pred HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh
Q 005877 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG-HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW 424 (672)
Q Consensus 352 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~ 424 (672)
+.++.-+|.++.. .+++++|...|++|++.+ +..++..+|.++.. .|+.++|++.|++|...+|.
T Consensus 420 ~~~~~ala~~~~~----~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~----~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 420 PRIYEILAVQALV----KGKTDEAYQAINKAIDLEMSWLNYVLLGKVYEL----KGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCC
Confidence 6677777777776 778888888888887754 56777788888877 78888888888888877754
No 175
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0012 Score=67.14 Aligned_cols=77 Identities=17% Similarity=0.073 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHH--HcCCHHHHHHHH
Q 005877 388 QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRMA--ELGYEVAQSNAA 463 (672)
Q Consensus 388 ~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~--~~g~~~a~~nla 463 (672)
..++.||+.++.. .+++.+|+.+..++++.+ |..++++.|.++...|+++.|+..|++++ +++|..+...|.
T Consensus 257 ~~~~lNlA~c~lK----l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~ 332 (397)
T KOG0543|consen 257 LACHLNLAACYLK----LKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELI 332 (397)
T ss_pred HHHhhHHHHHHHh----hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 4567888888888 889999999999998887 45689999999999999999999999995 456777777777
Q ss_pred HHHHH
Q 005877 464 WILDK 468 (672)
Q Consensus 464 ~~l~~ 468 (672)
.+-.+
T Consensus 333 ~l~~k 337 (397)
T KOG0543|consen 333 KLKQK 337 (397)
T ss_pred HHHHH
Confidence 76554
No 176
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0016 Score=64.03 Aligned_cols=103 Identities=12% Similarity=0.124 Sum_probs=76.6
Q ss_pred hCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHH
Q 005877 156 EGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEY 235 (672)
Q Consensus 156 ~~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~ 235 (672)
+++|++.+..||.+|+..++++.|..-|.++.++
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL---------------------------------------------- 185 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL---------------------------------------------- 185 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh----------------------------------------------
Confidence 4677777888888888877777777777777652
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 005877 236 QAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ 312 (672)
Q Consensus 236 aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 312 (672)
.+.+++....+|.+++... -..+..++...|++++.. .+..+.+.||..++. ++++.+|+..++..++.
T Consensus 186 --~g~n~~~~~g~aeaL~~~a--~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe----~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 186 --AGDNPEILLGLAEALYYQA--GQQMTAKARALLRQALALDPANIRALSLLAFAAFE----QGDYAEAAAAWQMLLDL 256 (287)
T ss_pred --CCCCHHHHHHHHHHHHHhc--CCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----cccHHHHHHHHHHHHhc
Confidence 3457777788888777663 335777888888888764 567788888888887 88888888888877765
No 177
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.58 E-value=0.042 Score=52.59 Aligned_cols=210 Identities=24% Similarity=0.218 Sum_probs=126.1
Q ss_pred CHHHHHHHHHHHHhCCC----HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHcCCCccC
Q 005877 335 NYTKAKEYFEKAADNEE----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN----AGHQKAFYQLAKMFHTGVGLKK 406 (672)
Q Consensus 335 ~~~~A~~~~~~a~~~~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~----~~~~~a~~~L~~~y~~g~g~~~ 406 (672)
....+...+........ .......+..+.. .+++..+...+..... ......+..++..+.. .+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 109 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLK----LGRLEEALELLEKALELELLPNLAEALLNLGLLLEA----LG 109 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHH----cccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH----Hh
Confidence 33444444444443321 3455555555555 5556666666555543 2234455555555554 55
Q ss_pred CHHHHHHHHHHHHHcCCh--hHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhCCCCcccCC
Q 005877 407 NLHMATALYKLVAERGPW--SSLSRWAL-ESYLKGDVGKAFLLYSRMAELGY-----EVAQSNAAWILDKYGEGSMCMGE 478 (672)
Q Consensus 407 ~~~~A~~~~~~a~~~~~~--~a~~~lg~-~~~~~g~~~~A~~~~~~a~~~g~-----~~a~~nla~~l~~~~~~~~~~~~ 478 (672)
++.+++..++++....+. ......+. .+...|++++|...|.+++.... .......+..+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 179 (291)
T COG0457 110 KYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEA---------- 179 (291)
T ss_pred hHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH----------
Confidence 566666666666654422 23333333 56666777777777776655221 1112222222222
Q ss_pred CCCCCchHhHHHHHHHHHHHHhCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHcC
Q 005877 479 SGFCTDAERHQCAHSLWWQASEQG---NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSN--AQAMFNLGYMHEHG 553 (672)
Q Consensus 479 ~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~~--~~a~~~Lg~~y~~g 553 (672)
.++.++|+..+.++.... .......++..+. ..+++.+|+..+.++..... ......++..+..
T Consensus 180 ------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~- 248 (291)
T COG0457 180 ------LGRYEEALELLEKALKLNPDDDAEALLNLGLLYL----KLGKYEEALEYYEKALELDPDNAEALYNLALLLLE- 248 (291)
T ss_pred ------hcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHH----HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHH-
Confidence 446777777777665543 3467778888888 77789999999999987533 5677777877763
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCC
Q 005877 554 QGLPLDLHLAKRYYDQALEVDPA 576 (672)
Q Consensus 554 ~g~~~d~~~A~~~~~~A~~~~~~ 576 (672)
.++.+.+...+.+++...|.
T Consensus 249 ---~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 249 ---LGRYEEALEALEKALELDPD 268 (291)
T ss_pred ---cCCHHHHHHHHHHHHHhCcc
Confidence 55899999999999998887
No 178
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.044 Score=51.68 Aligned_cols=154 Identities=25% Similarity=0.231 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Q 005877 265 KALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFE 344 (672)
Q Consensus 265 ~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~ 344 (672)
+|.+..++|.++..+..-+. ...| .+.+++|.+.|.++... |.. .++++.|=..|.
T Consensus 3 ~a~~l~k~AEkK~~~s~gF~----lfgg---~~k~eeAadl~~~Aan~------------ykl-----aK~w~~AG~afl 58 (288)
T KOG1586|consen 3 DAVQLMKKAEKKLNGSGGFL----LFGG---SNKYEEAAELYERAANM------------YKL-----AKNWSAAGDAFL 58 (288)
T ss_pred cHHHHHHHHHHhcccCCccc----ccCC---CcchHHHHHHHHHHHHH------------HHH-----HHhHHHHHHHHH
Confidence 35566677766544332222 2222 45899999999987642 322 125555555555
Q ss_pred HHHhC--------CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCccCCH
Q 005877 345 KAADN--------EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH----QKAFYQLAKMFHTGVGLKKNL 408 (672)
Q Consensus 345 ~a~~~--------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~L~~~y~~g~g~~~~~ 408 (672)
++++. +-+..+..-+.+|.+ .|..+|+.+++++++. |. +.-...+|.+|+. -..|+
T Consensus 59 kaA~~h~k~~skhDaat~YveA~~cykk-----~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEs---dl~d~ 130 (288)
T KOG1586|consen 59 KAADLHLKAGSKHDAATTYVEAANCYKK-----VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYES---DLQDF 130 (288)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhhc-----cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhh---hHHHH
Confidence 55542 234455566777765 5999999999999873 31 2334577888887 24889
Q ss_pred HHHHHHHHHHHHcCC---hh-----HHHHHHHHHHhcCCHHHHHHHHHHH
Q 005877 409 HMATALYKLVAERGP---WS-----SLSRWALESYLKGDVGKAFLLYSRM 450 (672)
Q Consensus 409 ~~A~~~~~~a~~~~~---~~-----a~~~lg~~~~~~g~~~~A~~~~~~a 450 (672)
++|+.+|+++.+--. .. .+...+...-..++|.+|+..|++.
T Consensus 131 ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqv 180 (288)
T KOG1586|consen 131 EKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQV 180 (288)
T ss_pred HHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998887431 11 1222333333445555555555554
No 179
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.031 Score=53.83 Aligned_cols=226 Identities=13% Similarity=0.010 Sum_probs=145.7
Q ss_pred hhccCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCC
Q 005877 220 RKSRGEDDEAFQILEYQAQK-GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERN 298 (672)
Q Consensus 220 ~~~~g~~~~Ai~~~~~aa~~-~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~ 298 (672)
++..|+|..+|..-++.... +++.--..+.+.|+..| .+..-+.-.+.+- .....+...++..... +++
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg-----~~~~~~~eI~~~~-~~~lqAvr~~a~~~~~----e~~ 87 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALG-----QYQIVISEIKEGK-ATPLQAVRLLAEYLEL----ESN 87 (299)
T ss_pred HHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcc-----ccccccccccccc-CChHHHHHHHHHHhhC----cch
Confidence 45678899999888876555 77777778888887774 2222221111111 1223344455555554 555
Q ss_pred HHHHHHH-HHHHHHc---CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHH
Q 005877 299 YTKALEW-LTHAARQ---QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKL 374 (672)
Q Consensus 299 ~~~A~~~-~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~ 374 (672)
.+.-+.- ++..+.. .+...+..-+.+|.+ .+++++|++...+ .++-++...=-.++.+ ....+-
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~-----~~~~deAl~~~~~---~~~lE~~Al~VqI~lk----~~r~d~ 155 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMH-----DGDFDEALKALHL---GENLEAAALNVQILLK----MHRFDL 155 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhc-----CCChHHHHHHHhc---cchHHHHHHHHHHHHH----HHHHHH
Confidence 4444333 3333332 243455555667765 4699999998887 3344444444455666 678888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005877 375 ACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW--SSLSRWALESYLKGDVGKAFLLYSRMAE 452 (672)
Q Consensus 375 A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 452 (672)
|.+..++..+..+......||..+..-.+-...+..|.-+|+...+.-++ ..+...+.+....|++++|...++.|++
T Consensus 156 A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 156 AEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 88888888887776666667766554332344599999999999986644 4566677788899999999999999987
Q ss_pred c--CCHHHHHHHHHHHH
Q 005877 453 L--GYEVAQSNAAWILD 467 (672)
Q Consensus 453 ~--g~~~a~~nla~~l~ 467 (672)
. ++++.+.|+-.+-.
T Consensus 236 kd~~dpetL~Nliv~a~ 252 (299)
T KOG3081|consen 236 KDAKDPETLANLIVLAL 252 (299)
T ss_pred ccCCCHHHHHHHHHHHH
Confidence 6 47888887655433
No 180
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=97.54 E-value=0.00015 Score=47.68 Aligned_cols=34 Identities=44% Similarity=0.658 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcC
Q 005877 541 QAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVD 574 (672)
Q Consensus 541 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 574 (672)
.++++||.+|..|.|+++|..+|+.||++|.+.+
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELG 35 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHcc
Confidence 4666777777777777777777777777776654
No 181
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.50 E-value=0.00034 Score=72.68 Aligned_cols=68 Identities=15% Similarity=0.135 Sum_probs=61.5
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHH---HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhc
Q 005877 499 SEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQ---AMFNLGYMHEHGQGLPLDLHLAKRYYDQALEV 573 (672)
Q Consensus 499 ~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~---a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 573 (672)
.+++++.+++++|..|+ ..++|++|+.+|++|++. +++. +++|+|.+|.. .|+.++|+.++++|++.
T Consensus 70 ~dP~~a~a~~NLG~AL~----~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~----LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLF----SKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY----REEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 46788999999999999 899999999999999875 6664 49999999988 89999999999999997
Q ss_pred C
Q 005877 574 D 574 (672)
Q Consensus 574 ~ 574 (672)
+
T Consensus 142 s 142 (453)
T PLN03098 142 Y 142 (453)
T ss_pred c
Confidence 3
No 182
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.002 Score=63.24 Aligned_cols=112 Identities=21% Similarity=0.204 Sum_probs=88.6
Q ss_pred HHHHHHHHHH--HHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcc---CCHHHHH
Q 005877 108 MEEATSEVES--AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQ---DMHDKAV 180 (672)
Q Consensus 108 ~~~A~~~~~~--a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~---~~~~~A~ 180 (672)
.++-+.-++. ..+|+|++.+..||.+|.. .++...|...|.+|.+ ++|++.+..+|.++..+ .+..++.
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~----~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMA----LGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKAR 213 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 4455555555 5678999999999999999 9999999999999987 68999999999988763 3455666
Q ss_pred HHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 005877 181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLR 260 (672)
Q Consensus 181 ~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~ 260 (672)
..+++++.. ++.|+.+.+.||..++..
T Consensus 214 ~ll~~al~~------------------------------------------------D~~~iral~lLA~~afe~----- 240 (287)
T COG4235 214 ALLRQALAL------------------------------------------------DPANIRALSLLAFAAFEQ----- 240 (287)
T ss_pred HHHHHHHhc------------------------------------------------CCccHHHHHHHHHHHHHc-----
Confidence 666666552 446888888888888887
Q ss_pred cCHHHHHHHHHHHHHc
Q 005877 261 RDRTKALMWFSKAADK 276 (672)
Q Consensus 261 ~~~~~A~~~~~~a~~~ 276 (672)
+|+.+|+..++..++.
T Consensus 241 g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 241 GDYAEAAAAWQMLLDL 256 (287)
T ss_pred ccHHHHHHHHHHHHhc
Confidence 4888888888887774
No 183
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00094 Score=67.94 Aligned_cols=120 Identities=20% Similarity=0.243 Sum_probs=84.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHH
Q 005877 429 RWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAAL 508 (672)
Q Consensus 429 ~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~ 508 (672)
.-|..+++.|+|..|...|++|+..=.. . . ..+.+.-.++ ..--...+.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~-----------~----------~--~~~~ee~~~~--------~~~k~~~~l 261 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEY-----------R----------R--SFDEEEQKKA--------EALKLACHL 261 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhc-----------c----------c--cCCHHHHHHH--------HHHHHHHhh
Confidence 4577788899999999999888653100 0 0 0001111111 111123567
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcchhHHHHH
Q 005877 509 LIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPVTLALT 586 (672)
Q Consensus 509 ~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~~~~~ 586 (672)
||+.+|. +.++|.+|+++-.++++. +|..|+|.-|.++.. .++++.|+..|++|+++.|++. .+...+.
T Consensus 262 NlA~c~l----Kl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~----~~e~~~A~~df~ka~k~~P~Nk-a~~~el~ 332 (397)
T KOG0543|consen 262 NLAACYL----KLKEYKEAIESCNKVLELDPNNVKALYRRGQALLA----LGEYDLARDDFQKALKLEPSNK-AARAELI 332 (397)
T ss_pred HHHHHHH----hhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh----hccHHHHHHHHHHHHHhCCCcH-HHHHHHH
Confidence 9999999 889999999999999874 789999999999987 8899999999999999999874 3333444
Q ss_pred HH
Q 005877 587 SL 588 (672)
Q Consensus 587 ~~ 588 (672)
++
T Consensus 333 ~l 334 (397)
T KOG0543|consen 333 KL 334 (397)
T ss_pred HH
Confidence 33
No 184
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.42 E-value=0.018 Score=53.48 Aligned_cols=38 Identities=11% Similarity=0.017 Sum_probs=32.8
Q ss_pred HHhCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 005877 154 AAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAV 191 (672)
Q Consensus 154 A~~~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~ 191 (672)
|+.+..++..+.||..+...|+++.|.+.|+.+.+.+|
T Consensus 93 ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp 130 (297)
T COG4785 93 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 130 (297)
T ss_pred hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCC
Confidence 45688899999999999999999999999998887543
No 185
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.41 E-value=0.0017 Score=63.03 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=37.9
Q ss_pred hhcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC-----hhHHHHHHHHHHhcC
Q 005877 369 KRDVKLACKYFLVAANAG-----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-----WSSLSRWALESYLKG 438 (672)
Q Consensus 369 ~~~~~~A~~~~~~A~~~~-----~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~lg~~~~~~g 438 (672)
.+||..|..-|..-++.. .++|+||||.++.. +++|+.|...|..+++..| +++++.+|.+...+|
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~----qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~ 229 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA----QGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLG 229 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh----cccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhc
Confidence 344444444444444422 23445555555444 4555555555555444332 344555555555555
Q ss_pred CHHHHHHHHHHHHH
Q 005877 439 DVGKAFLLYSRMAE 452 (672)
Q Consensus 439 ~~~~A~~~~~~a~~ 452 (672)
+.++|-..|++.++
T Consensus 230 ~~d~A~atl~qv~k 243 (262)
T COG1729 230 NTDEACATLQQVIK 243 (262)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555554444
No 186
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.39 E-value=0.32 Score=53.14 Aligned_cols=318 Identities=18% Similarity=0.120 Sum_probs=143.4
Q ss_pred hhHhhhccCChHHHHHHHHHH---------HHcCCHHHHHHHHHH----HHhcCCCcccCHHHHHHHHHHHHHcCCHHHH
Q 005877 216 KGALRKSRGEDDEAFQILEYQ---------AQKGNAGAMYKIGLF----YYFGLRGLRRDRTKALMWFSKAADKGEPQSM 282 (672)
Q Consensus 216 ~~~~~~~~g~~~~Ai~~~~~a---------a~~~~~~a~~~Lg~~----y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~ 282 (672)
-|.++.+..++++|+++|++- +.-..|.-...|-.. +.+. ++++.|+..|-.+-..- .+.
T Consensus 667 agdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~-----~q~daainhfiea~~~~--kai 739 (1636)
T KOG3616|consen 667 AGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQI-----GQLDAAINHFIEANCLI--KAI 739 (1636)
T ss_pred hhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHH-----HhHHHHHHHHHHhhhHH--HHH
Confidence 345555566777777777652 222233333333222 2222 46777777776542110 000
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005877 283 EFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYN-GIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVM 361 (672)
Q Consensus 283 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~-~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~ 361 (672)
..-.. .+.+.+|+..+...-++.....++ .++.-|.. +++++-|.++|.++-...++ -.|
T Consensus 740 ----eaai~----akew~kai~ildniqdqk~~s~yy~~iadhyan-----~~dfe~ae~lf~e~~~~~da------i~m 800 (1636)
T KOG3616|consen 740 ----EAAIG----AKEWKKAISILDNIQDQKTASGYYGEIADHYAN-----KGDFEIAEELFTEADLFKDA------IDM 800 (1636)
T ss_pred ----HHHhh----hhhhhhhHhHHHHhhhhccccccchHHHHHhcc-----chhHHHHHHHHHhcchhHHH------HHH
Confidence 00001 455666666666554444333333 34444543 56777777777665332222 123
Q ss_pred HHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHH---HHcCC--------CccCCHHHHHHHHHHH---------HHc
Q 005877 362 YYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKM---FHTGV--------GLKKNLHMATALYKLV---------AER 421 (672)
Q Consensus 362 y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~---y~~g~--------g~~~~~~~A~~~~~~a---------~~~ 421 (672)
|-+ .+.+..|.+.-++.-.+....+ .+++.. -..|. -+-+..++|+..|++. ++.
T Consensus 801 y~k----~~kw~da~kla~e~~~~e~t~~-~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 801 YGK----AGKWEDAFKLAEECHGPEATIS-LYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred Hhc----cccHHHHHHHHHHhcCchhHHH-HHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHH
Confidence 333 4444444433333211111111 111111 01111 1366778888888775 222
Q ss_pred CCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCcccCCCCCCCchHhHHHHHHHHH
Q 005877 422 GPW----SSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDK-YGEGSMCMGESGFCTDAERHQCAHSLWW 496 (672)
Q Consensus 422 ~~~----~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 496 (672)
.++ +....+|..+...|+...|...|.+|-+-.-..-++.-.-+... ++. ....+| .+....-.-+|-
T Consensus 876 ~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayri---aktegg----~n~~k~v~flwa 948 (1636)
T KOG3616|consen 876 HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRI---AKTEGG----ANAEKHVAFLWA 948 (1636)
T ss_pred hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHH---Hhcccc----ccHHHHHHHHHH
Confidence 222 35667788888888888888888766332111111100000000 000 000000 000001111122
Q ss_pred HHHhCCC-HHHHHHHHHHHHhCC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Q 005877 497 QASEQGN-EHAALLIGDAYYYGR---GTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALE 572 (672)
Q Consensus 497 ~a~~~~~-~~a~~~lG~~y~~g~---g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 572 (672)
+++--+- ...++.+|.+-. |. -....++-|...-+.+++..-+.....|+..++. .|.++.|-+.|-.|+.
T Consensus 949 ksiggdaavkllnk~gll~~-~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~led----egk~edaskhyveaik 1023 (1636)
T KOG3616|consen 949 KSIGGDAAVKLLNKHGLLEA-AIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLED----EGKFEDASKHYVEAIK 1023 (1636)
T ss_pred HhhCcHHHHHHHHhhhhHHH-HhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhh----ccchhhhhHhhHHHhh
Confidence 2111110 111223333221 10 0123455555555556655556666677766665 7888888888888888
Q ss_pred cCCC
Q 005877 573 VDPA 576 (672)
Q Consensus 573 ~~~~ 576 (672)
++.-
T Consensus 1024 lnty 1027 (1636)
T KOG3616|consen 1024 LNTY 1027 (1636)
T ss_pred cccc
Confidence 7643
No 187
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=97.37 E-value=0.00033 Score=46.05 Aligned_cols=36 Identities=36% Similarity=0.579 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 005877 504 EHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSN 539 (672)
Q Consensus 504 ~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 539 (672)
+++++.||.+|..|.|+..|..+|+.||++|++.++
T Consensus 1 ~~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g~ 36 (36)
T smart00671 1 AEAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELGN 36 (36)
T ss_pred CHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHccC
Confidence 368899999999999999999999999999998764
No 188
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.33 E-value=0.0022 Score=62.24 Aligned_cols=86 Identities=19% Similarity=0.202 Sum_probs=75.7
Q ss_pred hHhHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHcCC
Q 005877 485 AERHQCAHSLWWQASEQGN-----EHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ-----SNAQAMFNLGYMHEHGQ 554 (672)
Q Consensus 485 ~~~~~~A~~~~~~a~~~~~-----~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~-----~~~~a~~~Lg~~y~~g~ 554 (672)
.+++..|..-|..-++..+ ++|+|+||.+++ .++|++.|...|...++. .-|++++.||.+...
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y----~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~-- 227 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLY----AQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR-- 227 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHH----hcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH--
Confidence 5678999999988777643 899999999999 999999999999999873 348999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCc
Q 005877 555 GLPLDLHLAKRYYDQALEVDPAAK 578 (672)
Q Consensus 555 g~~~d~~~A~~~~~~A~~~~~~~~ 578 (672)
.++.++|+..|++.++.-|.+.
T Consensus 228 --l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 228 --LGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred --hcCHHHHHHHHHHHHHHCCCCH
Confidence 8999999999999999888764
No 189
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.33 E-value=0.14 Score=48.73 Aligned_cols=211 Identities=22% Similarity=0.183 Sum_probs=156.9
Q ss_pred CChHHHHHHHHHHHHcCC----HHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHcCCCC
Q 005877 224 GEDDEAFQILEYQAQKGN----AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD----KGEPQSMEFLGEIYARGAGV 295 (672)
Q Consensus 224 g~~~~Ai~~~~~aa~~~~----~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~Lg~~y~~g~g~ 295 (672)
+....++..+........ .......+..+... +++..++..+..... ......+..+|..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 107 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKL-----GRLEEALELLEKALELELLPNLAEALLNLGLLLEA---- 107 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHc-----ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH----
Confidence 345556666666655542 57777888887776 488999998888864 4567788888888888
Q ss_pred cCCHHHHHHHHHHHHHcC--CHHHHHHHHH-HHHcCCCCCcCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHcCCC
Q 005877 296 ERNYTKALEWLTHAARQQ--LYSAYNGIGY-LYVKGYGVEKKNYTKAKEYFEKAADNE-----EAGGHYNLGVMYYKGIG 367 (672)
Q Consensus 296 ~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~-~y~~g~g~~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g 367 (672)
.+++..++..+.++.... ........+. ++.. .+++++|..+|+++.... .......++..+..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 179 (291)
T COG0457 108 LGKYEEALELLEKALALDPDPDLAEALLALGALYE-----LGDYEEALELYEKALELDPELNELAEALLALGALLEA--- 179 (291)
T ss_pred HhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH---
Confidence 888999999999998743 3233333443 4543 569999999999997732 33445555555555
Q ss_pred chhcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh--hHHHHHHHHHHhcCCHHH
Q 005877 368 VKRDVKLACKYFLVAANAG---HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW--SSLSRWALESYLKGDVGK 442 (672)
Q Consensus 368 ~~~~~~~A~~~~~~A~~~~---~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~~~~~g~~~~ 442 (672)
.+++++++..+.++.... .......++..+.. .+++++|+..+..+.+..+. .....++..+...+++++
T Consensus 180 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (291)
T COG0457 180 -LGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK----LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEE 254 (291)
T ss_pred -hcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH----cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHH
Confidence 779999999999998754 35778888888887 77899999999999988864 567777777777778999
Q ss_pred HHHHHHHHHHcCCH
Q 005877 443 AFLLYSRMAELGYE 456 (672)
Q Consensus 443 A~~~~~~a~~~g~~ 456 (672)
+...+.++......
T Consensus 255 ~~~~~~~~~~~~~~ 268 (291)
T COG0457 255 ALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHhCcc
Confidence 99999998776544
No 190
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.31 E-value=0.0046 Score=52.48 Aligned_cols=93 Identities=17% Similarity=0.092 Sum_probs=73.0
Q ss_pred HHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh------hHHHHH
Q 005877 359 GVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW------SSLSRW 430 (672)
Q Consensus 359 g~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~------~a~~~l 430 (672)
|.+... .++.+.|++.|.+++. +..+.+++|-+..+.- +++.++|+.-+.++++...+ .++...
T Consensus 50 ~valaE----~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL----q~~~e~ALdDLn~AleLag~~trtacqa~vQR 121 (175)
T KOG4555|consen 50 AIALAE----AGDLDGALELFGQALCLAPERASAYNNRAQALRL----QGDDEEALDDLNKALELAGDQTRTACQAFVQR 121 (175)
T ss_pred HHHHHh----ccchHHHHHHHHHHHHhcccchHhhccHHHHHHH----cCChHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 455555 6788888888888876 3567888888888876 78888888888888887632 367788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCHHHH
Q 005877 431 ALESYLKGDVGKAFLLYSRMAELGYEVAQ 459 (672)
Q Consensus 431 g~~~~~~g~~~~A~~~~~~a~~~g~~~a~ 459 (672)
|.+|-..|+.++|..-|+.|++.|.+.+.
T Consensus 122 g~lyRl~g~dd~AR~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 122 GLLYRLLGNDDAARADFEAAAQLGSKFAR 150 (175)
T ss_pred HHHHHHhCchHHHHHhHHHHHHhCCHHHH
Confidence 88888899999999999999998877664
No 191
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.30 E-value=0.00073 Score=70.33 Aligned_cols=67 Identities=13% Similarity=-0.058 Sum_probs=56.2
Q ss_pred HhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHH---HHHHHHHHhccCCHHHHHHHHHHHHHH
Q 005877 119 AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQS---KMAVAYTYLRQDMHDKAVKLYAELAEI 189 (672)
Q Consensus 119 ~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a---~~~Lg~~y~~~~~~~~A~~~y~~a~~~ 189 (672)
++++++.+++++|..|.. .+++++|+.+|++|++ +++.++ ++++|.+|..+|+.++|+.+++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~----lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFS----KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566788888888888888 8889999999998876 566644 899999999999999999999998885
No 192
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=97.29 E-value=0.00031 Score=47.16 Aligned_cols=35 Identities=43% Similarity=0.759 Sum_probs=22.1
Q ss_pred HHHHHHHH--HHHHcCC-CCCCCHHHHHHHHHHHHhcC
Q 005877 540 AQAMFNLG--YMHEHGQ-GLPLDLHLAKRYYDQALEVD 574 (672)
Q Consensus 540 ~~a~~~Lg--~~y~~g~-g~~~d~~~A~~~~~~A~~~~ 574 (672)
|.|+++|| .+|..|. |+++|.++|++||++|.+.+
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHcc
Confidence 45666666 6666665 56666666666666666554
No 193
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=97.21 E-value=0.00048 Score=46.20 Aligned_cols=36 Identities=36% Similarity=0.624 Sum_probs=32.4
Q ss_pred HHHHHHHH--HHHHhCC-CCCCCHHHHHHHHHHHHhcCC
Q 005877 504 EHAALLIG--DAYYYGR-GTQRDYERAAEAYMHARSQSN 539 (672)
Q Consensus 504 ~~a~~~lG--~~y~~g~-g~~~d~~~A~~~~~~A~~~~~ 539 (672)
+++++.|| .+|..|. |..+|+++|+.||++|++.+|
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g~ 39 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQGH 39 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT-
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHccC
Confidence 57899999 8889999 899999999999999998865
No 194
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.10 E-value=0.0088 Score=62.71 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=92.7
Q ss_pred hhhHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHH
Q 005877 105 VRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKL 182 (672)
Q Consensus 105 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~ 182 (672)
.++++.|+.++++..... |++...|+.+|.. .++..+|+....+++. +.+...+...+..+...++++.|++.
T Consensus 182 t~~~~~ai~lle~L~~~~-pev~~~LA~v~l~----~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~i 256 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERD-PEVAVLLARVYLL----MNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEI 256 (395)
T ss_pred cccHHHHHHHHHHHHhcC-CcHHHHHHHHHHh----cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 467999999999966544 7788899999987 7788999999999997 46788888899999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHH
Q 005877 183 YAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEY 235 (672)
Q Consensus 183 y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~ 235 (672)
.+++.+..|..+ ..+..++.+|...|++++|+..+..
T Consensus 257 Ak~av~lsP~~f----------------~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 257 AKKAVELSPSEF----------------ETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHhCchhH----------------HHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 999999877655 3456688888888888888877664
No 195
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.07 E-value=0.029 Score=58.88 Aligned_cols=95 Identities=16% Similarity=0.281 Sum_probs=42.4
Q ss_pred ccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCH
Q 005877 222 SRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNY 299 (672)
Q Consensus 222 ~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~ 299 (672)
..++++.|++.+++..... |+....|+.++... .+..+|++.+.+++.. .+...+...+..+.. .+++
T Consensus 181 ~t~~~~~ai~lle~L~~~~-pev~~~LA~v~l~~-----~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~----k~~~ 250 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERD-PEVAVLLARVYLLM-----NEEVEAIRLLNEALKENPQDSELLNLQAEFLLS----KKKY 250 (395)
T ss_pred hcccHHHHHHHHHHHHhcC-CcHHHHHHHHHHhc-----CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCH
Confidence 3344555555555543332 34444455555443 2444555555555442 233344444444444 4444
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 005877 300 TKALEWLTHAARQ--QLYSAYNGIGYLYV 326 (672)
Q Consensus 300 ~~A~~~~~~a~~~--~~~~a~~~Lg~~y~ 326 (672)
+.|+...+++++. .+..+++.|+.+|.
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi 279 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQLAECYI 279 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 4444444444432 23344444444444
No 196
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.03 E-value=0.0013 Score=50.38 Aligned_cols=49 Identities=22% Similarity=0.259 Sum_probs=33.8
Q ss_pred cCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 005877 141 ERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEI 189 (672)
Q Consensus 141 ~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~ 189 (672)
.+++++|+.+|++++. +++.++.+.||.+|...|++++|...++++...
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4667777777777655 667777777777777777777777777766543
No 197
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.36 Score=46.75 Aligned_cols=247 Identities=13% Similarity=0.042 Sum_probs=147.0
Q ss_pred cCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHH
Q 005877 296 ERNYTKALEWLTHAARQ-QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKL 374 (672)
Q Consensus 296 ~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~ 374 (672)
.|+|.+++..-++.-.. +..+-...+...|+. .|.+..-+.-...+. .....+...++..... +++.++
T Consensus 21 ~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylA-----lg~~~~~~~eI~~~~-~~~lqAvr~~a~~~~~----e~~~~~ 90 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSSKTDVELDVYMYRAYLA-----LGQYQIVISEIKEGK-ATPLQAVRLLAEYLEL----ESNKKS 90 (299)
T ss_pred hhHHHHHHHHHHhhccccchhHHHHHHHHHHHH-----ccccccccccccccc-CChHHHHHHHHHHhhC----cchhHH
Confidence 57777777776665443 455555556666652 122211111111111 1112233334443333 333333
Q ss_pred HH-HHHHHHHHc---CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005877 375 AC-KYFLVAANA---GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRM 450 (672)
Q Consensus 375 A~-~~~~~A~~~---~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 450 (672)
-+ +.++..+.. .+......-+.+|.+ .++++.|....++ ..+.++...-..++.+..+.+-|....+++
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~----~~~~deAl~~~~~---~~~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMH----DGDFDEALKALHL---GENLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhc----CCChHHHHHHHhc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 223333222 122334444566666 6888888887776 234455555556667777888888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHHhCCCCCCCHHHHH
Q 005877 451 AELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYYYGRGTQRDYERAA 528 (672)
Q Consensus 451 ~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lG~~y~~g~g~~~d~~~A~ 528 (672)
.+.++......||..+-+.-.+ .+....|.-+|+.-.+.- .+..++..+.++. .++++++|.
T Consensus 164 q~ided~tLtQLA~awv~la~g------------gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l----~~~~~eeAe 227 (299)
T KOG3081|consen 164 QQIDEDATLTQLAQAWVKLATG------------GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHL----QLGRYEEAE 227 (299)
T ss_pred HccchHHHHHHHHHHHHHHhcc------------chhhhhHHHHHHHHhcccCCChHHHccHHHHHH----HhcCHHHHH
Confidence 8888887777788777663322 446888999998777643 3666778888888 889999999
Q ss_pred HHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877 529 EAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK 578 (672)
Q Consensus 529 ~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 578 (672)
..++.|+.. ++|+.+-|+=.+-.+ +-+|-+---++..+.....|+..
T Consensus 228 ~lL~eaL~kd~~dpetL~Nliv~a~~---~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 228 SLLEEALDKDAKDPETLANLIVLALH---LGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHH---hCCChHHHHHHHHHHHhcCCcch
Confidence 999999875 678998888766443 12343444455555555566543
No 198
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.01 E-value=0.21 Score=58.56 Aligned_cols=175 Identities=14% Similarity=-0.000 Sum_probs=131.3
Q ss_pred cCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHcC
Q 005877 333 KKNYTKAKEYFEKAADN----------EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGH-QKAFYQLAKMFHTG 401 (672)
Q Consensus 333 ~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~-~~a~~~L~~~y~~g 401 (672)
..+.++|.+.+++|+.. +.-.|+.||-.+|- .-+.-.+.|++|.+.-+ -..+..|..+|..
T Consensus 1471 lsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG-------~eesl~kVFeRAcqycd~~~V~~~L~~iy~k- 1542 (1710)
T KOG1070|consen 1471 LSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG-------TEESLKKVFERACQYCDAYTVHLKLLGIYEK- 1542 (1710)
T ss_pred hhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC-------cHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-
Confidence 45889999999999864 23345666666553 34566778889888765 4667788888887
Q ss_pred CCccCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCcc
Q 005877 402 VGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRMAELG----YEVAQSNAAWILDKYGEGSMC 475 (672)
Q Consensus 402 ~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g----~~~a~~nla~~l~~~~~~~~~ 475 (672)
...+++|.++|+..++.- ....+..++..+....+-+.|...+.+|++-- +.....-.|.+-.+
T Consensus 1543 ---~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk------- 1612 (1710)
T KOG1070|consen 1543 ---SEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK------- 1612 (1710)
T ss_pred ---hhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh-------
Confidence 788899999999988765 35567788888888888889999999997642 44444445666555
Q ss_pred cCCCCCCCchHhHHHHHHHHHH--HHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 005877 476 MGESGFCTDAERHQCAHSLWWQ--ASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQS 538 (672)
Q Consensus 476 ~~~~~~~~~~~~~~~A~~~~~~--a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~ 538 (672)
.++.+++..+|+- +..|.-.|.|.-+-++-. ..++.+.+...|++++..+
T Consensus 1613 ---------~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ei----k~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1613 ---------YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEI----KHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred ---------cCCchhhHHHHHHHHhhCccchhHHHHHHHHHH----ccCCHHHHHHHHHHHHhcC
Confidence 5567888888884 556667888888888777 7899999999999998763
No 199
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.99 E-value=0.0097 Score=50.58 Aligned_cols=98 Identities=20% Similarity=0.057 Sum_probs=65.3
Q ss_pred cCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhH
Q 005877 141 ERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGA 218 (672)
Q Consensus 141 ~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 218 (672)
.++.+.|++.|.+++. +.++.++.+-+..+.-+++.++|+.-++++++..... .+-.-.+..+.|.
T Consensus 56 ~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~------------trtacqa~vQRg~ 123 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ------------TRTACQAFVQRGL 123 (175)
T ss_pred ccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc------------chHHHHHHHHHHH
Confidence 5677788888888776 5777888888888888888888888888877753210 1111123345666
Q ss_pred hhhccCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 005877 219 LRKSRGEDDEAFQILEYQAQKGNAGAMYKIGL 250 (672)
Q Consensus 219 ~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~ 250 (672)
+|..+|+.++|-.-|+.++..|.+-+...|-.
T Consensus 124 lyRl~g~dd~AR~DFe~AA~LGS~FAr~QLV~ 155 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQLGSKFAREQLVE 155 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHhCCHHHHHHHHh
Confidence 77777777777777777777776666555443
No 200
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.94 E-value=0.0025 Score=49.61 Aligned_cols=60 Identities=22% Similarity=0.211 Sum_probs=53.0
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877 511 GDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK 578 (672)
Q Consensus 511 G~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 578 (672)
..+|. ..+|+++|+++++++++ ++++..++.+|.+|.. .|++++|++.++++++.+|+..
T Consensus 2 ~~~~~----~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~----~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 2 KQIYL----QQEDYEEALEVLERALELDPDDPELWLQRARCLFQ----LGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHH----hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH----hccHHHHHHHHHHHHHHCCCcH
Confidence 45677 78999999999999977 4788999999999988 8999999999999999999754
No 201
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.88 E-value=0.0024 Score=49.70 Aligned_cols=57 Identities=12% Similarity=0.042 Sum_probs=49.3
Q ss_pred HHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 005877 131 GFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAV 191 (672)
Q Consensus 131 g~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~ 191 (672)
..+|.. .+++++|+.++++++. ++++..+...|.++...|++++|+..++++++..|
T Consensus 2 ~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQ----QEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHh----CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 456776 8899999999999876 68889999999999999999999999999988654
No 202
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.85 E-value=0.0036 Score=47.90 Aligned_cols=60 Identities=20% Similarity=0.089 Sum_probs=50.4
Q ss_pred hhhHHHHHHHHHHH--HhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHH
Q 005877 105 VRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAY 168 (672)
Q Consensus 105 ~~~~~~A~~~~~~a--~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~ 168 (672)
.|++++|+..|+++ ..|+++++.+.+|.+|.. .+++++|...++++.. ++++..+..++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK----QGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH----TT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 58999999999994 567999999999999999 9999999999999887 455666666554
No 203
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.79 E-value=0.0025 Score=41.15 Aligned_cols=33 Identities=42% Similarity=0.575 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877 540 AQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA 576 (672)
Q Consensus 540 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 576 (672)
+.+++++|.+|.. .+++++|+.+|++|++++|+
T Consensus 1 a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQ----LGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHH----hCCchHHHHHHHHHHHHCcC
Confidence 4567888888876 78888888888888888775
No 204
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.72 E-value=0.27 Score=51.39 Aligned_cols=145 Identities=14% Similarity=0.059 Sum_probs=100.5
Q ss_pred hhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHH---hCC-C-------HHHHHHHHHHHhc
Q 005877 106 RVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAA---EGG-N-------IQSKMAVAYTYLR 172 (672)
Q Consensus 106 ~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~---~~~-~-------~~a~~~Lg~~y~~ 172 (672)
.+...+....+... ..+.+.+.+.-+..+.. .+|+.+|.+.+...- ++| . -....+||.++++
T Consensus 220 ~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~----~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~ 295 (696)
T KOG2471|consen 220 RNLKLAKREVKHVMNIAQDSSMALLLKSQLEYA----HGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQ 295 (696)
T ss_pred HHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHH----hcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeee
Confidence 44555555554432 33667788777877776 889999999887642 233 1 1344789999999
Q ss_pred cCCHHHHHHHHHHHHHHHHhhhhcc-CCCCccc-chhcccCchhhhhHhhhccCChHHHHHHHHHHHHc--CCHHHHHHH
Q 005877 173 QDMHDKAVKLYAELAEIAVNSFLIS-KDSPVIE-PIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK--GNAGAMYKI 248 (672)
Q Consensus 173 ~~~~~~A~~~y~~a~~~~~~~~~~~-~~~~~~~-~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~L 248 (672)
.+.|.-++.+|.+++.........+ .+.+... ..--.-++.+|.|..+...|++-.|.++|.++... .+|..++.|
T Consensus 296 ~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRl 375 (696)
T KOG2471|consen 296 LGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRL 375 (696)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 9999999999999997333222221 1111111 01112356778999999999999999999999887 599999999
Q ss_pred HHHHHh
Q 005877 249 GLFYYF 254 (672)
Q Consensus 249 g~~y~~ 254 (672)
+.+...
T Consensus 376 AEcCim 381 (696)
T KOG2471|consen 376 AECCIM 381 (696)
T ss_pred HHHHHH
Confidence 988753
No 205
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.70 E-value=0.0034 Score=40.43 Aligned_cols=33 Identities=33% Similarity=0.490 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877 540 AQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA 576 (672)
Q Consensus 540 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 576 (672)
|.+++.+|.+|.. .|++++|+++|++|++++|+
T Consensus 1 a~~~~~lg~~~~~----~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQ----LGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHCcC
Confidence 4567777877776 77888888888888877775
No 206
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.59 E-value=0.47 Score=45.94 Aligned_cols=155 Identities=21% Similarity=0.280 Sum_probs=88.8
Q ss_pred cCCHHHHHHHHHHHHh--CC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhh
Q 005877 141 ERNKGKAFLYHHFAAE--GG---NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEEN 215 (672)
Q Consensus 141 ~~d~~~A~~~~~~A~~--~~---~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (672)
.+++++|+.+|+.... ++ -..+++.++..+.+.++++.|+...++-+...|.
T Consensus 47 ~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~----------------------- 103 (254)
T COG4105 47 KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT----------------------- 103 (254)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC-----------------------
Confidence 4455555555555443 22 2477888888888889999998888887665432
Q ss_pred hhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHH---HHHHHHHHc--CCHHHHHHHHHHHH
Q 005877 216 KGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKAL---MWFSKAADK--GEPQSMEFLGEIYA 290 (672)
Q Consensus 216 ~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~---~~~~~a~~~--~~~~a~~~Lg~~y~ 290 (672)
.++-.-+++..|.+++.+...+.+|..-+. .-|+..+.. +...+
T Consensus 104 ----------------------~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya--------- 152 (254)
T COG4105 104 ----------------------HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYA--------- 152 (254)
T ss_pred ----------------------CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcch---------
Confidence 123345677778888888766667765544 444444442 22211
Q ss_pred cCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHc
Q 005877 291 RGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-----EEAGGHYNLGVMYYK 364 (672)
Q Consensus 291 ~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~ 364 (672)
.|-++=+.+++..+ +.--..+|..|.. .+.+.-|+..++..++. ...+++..+...|..
T Consensus 153 ------~dA~~~i~~~~d~L----A~~Em~IaryY~k-----r~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~ 216 (254)
T COG4105 153 ------PDAKARIVKLNDAL----AGHEMAIARYYLK-----RGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYA 216 (254)
T ss_pred ------hhHHHHHHHHHHHH----HHHHHHHHHHHHH-----hcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence 12222222222221 1122346666764 45777777777777765 234566666666666
No 207
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=0.59 Score=44.65 Aligned_cols=42 Identities=19% Similarity=0.242 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Q 005877 520 TQRDYERAAEAYMHARSQ------SNAQAMFNLGYMHEHGQGLPLDLHLAKRY 566 (672)
Q Consensus 520 ~~~d~~~A~~~~~~A~~~------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 566 (672)
...||..|..+|+..... .+..++-+|=..|. .+|.++....
T Consensus 202 ~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-----~gD~E~~~kv 249 (308)
T KOG1585|consen 202 YAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-----EGDIEEIKKV 249 (308)
T ss_pred hHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-----cCCHHHHHHH
Confidence 457999999999996542 35667777777776 5677776543
No 208
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.45 E-value=0.13 Score=55.86 Aligned_cols=152 Identities=16% Similarity=0.161 Sum_probs=104.6
Q ss_pred CCCcCCHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Q 005877 293 AGVERNYTKALEWLTHAARQQLYSA--------YNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMY 362 (672)
Q Consensus 293 ~g~~~~~~~A~~~~~~a~~~~~~~a--------~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y 362 (672)
.|..+|-+.+++.+.++.+.++..+ .+.++.....+......+.+.|.+.+....+. +.+--.+.-|.++
T Consensus 198 vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~ 277 (468)
T PF10300_consen 198 VGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLE 277 (468)
T ss_pred cCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3447888888888888877543221 12223333333200234777888888877663 4555567778888
Q ss_pred HcCCCchhcHHHHHHHHHHHHHcC------CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChh-H--HHHHHHH
Q 005877 363 YKGIGVKRDVKLACKYFLVAANAG------HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS-S--LSRWALE 433 (672)
Q Consensus 363 ~~g~g~~~~~~~A~~~~~~A~~~~------~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~-a--~~~lg~~ 433 (672)
.. .++.++|++.|+++.... +....+.++.++.. ..++++|..++.+..+.++|. + .+..|..
T Consensus 278 ~~----~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~----~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 278 RL----KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF----QHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HH----hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH----HchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 88 889999999999876522 34567788888876 899999999999999988774 2 4456777
Q ss_pred HHhcCCH-------HHHHHHHHHHHH
Q 005877 434 SYLKGDV-------GKAFLLYSRMAE 452 (672)
Q Consensus 434 ~~~~g~~-------~~A~~~~~~a~~ 452 (672)
+...|+. ++|..++.++-.
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 8888888 777777776643
No 209
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.43 E-value=0.33 Score=46.30 Aligned_cols=56 Identities=20% Similarity=0.105 Sum_probs=31.7
Q ss_pred HHHHHhhcCCcccCCHHHHHHHHHHHHhC-CCHHHHHHH-------HHHHhccCCHHHHHHHHHHHHH
Q 005877 129 VLGFLYGMGMMRERNKGKAFLYHHFAAEG-GNIQSKMAV-------AYTYLRQDMHDKAVKLYAELAE 188 (672)
Q Consensus 129 ~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~-~~~~a~~~L-------g~~y~~~~~~~~A~~~y~~a~~ 188 (672)
.-+..|.. .+++++|..++.+|++. .+..+++.- +.+......+.++..+|+++..
T Consensus 36 kAAvafRn----Ak~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~ 99 (308)
T KOG1585|consen 36 KAAVAFRN----AKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASE 99 (308)
T ss_pred HHHHHHHh----hccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33445666 77888888888888852 333333333 3333334555556666665543
No 210
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.39 E-value=1.1 Score=52.96 Aligned_cols=201 Identities=14% Similarity=0.084 Sum_probs=115.6
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHH
Q 005877 157 GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQ 236 (672)
Q Consensus 157 ~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~a 236 (672)
|+..-.++..-..+++..+.++|.+..++++.... + | + - .
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN--~------------R--E------------------e------e 1494 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTIN--F------------R--E------------------E------E 1494 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCC--c------------c--h------------------h------H
Confidence 55555555555566678899999999998876210 0 0 0 0 0
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--C
Q 005877 237 AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEP-QSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--Q 313 (672)
Q Consensus 237 a~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~-~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~ 313 (672)
-..+---|+++|=..| +.-+.-.+.|++|.+-.++ ..+..|..+|.. ...+++|.++|+..++. .
T Consensus 1495 EKLNiWiA~lNlEn~y--------G~eesl~kVFeRAcqycd~~~V~~~L~~iy~k----~ek~~~A~ell~~m~KKF~q 1562 (1710)
T KOG1070|consen 1495 EKLNIWIAYLNLENAY--------GTEESLKKVFERACQYCDAYTVHLKLLGIYEK----SEKNDEADELLRLMLKKFGQ 1562 (1710)
T ss_pred HHHHHHHHHHhHHHhh--------CcHHHHHHHHHHHHHhcchHHHHHHHHHHHHH----hhcchhHHHHHHHHHHHhcc
Confidence 0001223444444444 2445555667777665554 356666777766 66667777777776654 2
Q ss_pred CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--C
Q 005877 314 LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--H 387 (672)
Q Consensus 314 ~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~ 387 (672)
....+..++...+. +.+-+.|...+++|++- .+.+.....+++-++ .||.+.+...|+-.+... .
T Consensus 1563 ~~~vW~~y~~fLl~-----~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk----~GDaeRGRtlfEgll~ayPKR 1633 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLR-----QNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK----YGDAERGRTLFEGLLSAYPKR 1633 (1710)
T ss_pred hhhHHHHHHHHHhc-----ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh----cCCchhhHHHHHHHHhhCccc
Confidence 45556666666654 32345566666766653 355555556666666 667777777776655433 3
Q ss_pred HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC
Q 005877 388 QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG 422 (672)
Q Consensus 388 ~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~ 422 (672)
.+.|.-...+-.. .++.+.+..+|+++++.+
T Consensus 1634 tDlW~VYid~eik----~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1634 TDLWSVYIDMEIK----HGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hhHHHHHHHHHHc----cCCHHHHHHHHHHHHhcC
Confidence 3444444444443 567777777777777665
No 211
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.39 E-value=0.081 Score=46.56 Aligned_cols=95 Identities=16% Similarity=0.124 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh-
Q 005877 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG-----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW- 424 (672)
Q Consensus 351 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~- 424 (672)
.+..++.-|.-.++ .+++++|++.|+.....- ...+...|+..|.. .+++++|+..+++-++..|.
T Consensus 9 ~~~~ly~~a~~~l~----~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~----~~~y~~A~a~~~rFirLhP~h 80 (142)
T PF13512_consen 9 SPQELYQEAQEALQ----KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK----QGDYEEAIAAYDRFIRLHPTH 80 (142)
T ss_pred CHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCC
Confidence 45666777777777 788888888888876532 35788888888887 88899999999888888753
Q ss_pred ----hHHHHHHHHHHhcCC---------------HHHHHHHHHHHHHc
Q 005877 425 ----SSLSRWALESYLKGD---------------VGKAFLLYSRMAEL 453 (672)
Q Consensus 425 ----~a~~~lg~~~~~~g~---------------~~~A~~~~~~a~~~ 453 (672)
-+++..|..++...+ ..+|+..|++.++.
T Consensus 81 p~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 81 PNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred CCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 367778888777654 55666666666553
No 212
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.34 E-value=0.29 Score=44.68 Aligned_cols=62 Identities=15% Similarity=0.023 Sum_probs=52.0
Q ss_pred hHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 005877 124 PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG---GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEI 189 (672)
Q Consensus 124 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~---~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~ 189 (672)
....+.||..... .|++.+|...|++++.. +++..++.++......+++..|...++++.+.
T Consensus 89 vqnr~rLa~al~e----lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~ 153 (251)
T COG4700 89 VQNRYRLANALAE----LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY 153 (251)
T ss_pred HHHHHHHHHHHHH----hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Confidence 4456788888877 88999999999999884 78888888999999999999998888887653
No 213
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.20 E-value=0.3 Score=53.19 Aligned_cols=163 Identities=20% Similarity=0.180 Sum_probs=97.8
Q ss_pred CchhcHHHHHHHHHHHHHcCCH---H-----HHHHHHHHHHcCC-CccCCHHHHHHHHHHHHHcCChhH--HHHHHHHHH
Q 005877 367 GVKRDVKLACKYFLVAANAGHQ---K-----AFYQLAKMFHTGV-GLKKNLHMATALYKLVAERGPWSS--LSRWALESY 435 (672)
Q Consensus 367 g~~~~~~~A~~~~~~A~~~~~~---~-----a~~~L~~~y~~g~-g~~~~~~~A~~~~~~a~~~~~~~a--~~~lg~~~~ 435 (672)
|-.+|.+.+++.+.++.+.++. . ..|++.....-++ +...+.+.|...++...++-|..+ ++..|..+.
T Consensus 199 GF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~ 278 (468)
T PF10300_consen 199 GFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER 278 (468)
T ss_pred CcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3356777777777776664432 1 1222333233222 146788888888888888777665 445677888
Q ss_pred hcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005877 436 LKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYY 515 (672)
Q Consensus 436 ~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~ 515 (672)
..|+.++|+..|+++++.....-+. ..-..+.+||++.
T Consensus 279 ~~g~~~~Ai~~~~~a~~~q~~~~Ql------------------------------------------~~l~~~El~w~~~ 316 (468)
T PF10300_consen 279 LKGNLEEAIESFERAIESQSEWKQL------------------------------------------HHLCYFELAWCHM 316 (468)
T ss_pred HhcCHHHHHHHHHHhccchhhHHhH------------------------------------------HHHHHHHHHHHHH
Confidence 8899999999999887432111111 1123456777777
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHc-CCC--CCCCHHHHHHHHHHHHhcCC
Q 005877 516 YGRGTQRDYERAAEAYMHARSQSN---AQAMFNLGYMHEH-GQG--LPLDLHLAKRYYDQALEVDP 575 (672)
Q Consensus 516 ~g~g~~~d~~~A~~~~~~A~~~~~---~~a~~~Lg~~y~~-g~g--~~~d~~~A~~~~~~A~~~~~ 575 (672)
...|+++|.+++.+-.+.++ +...|-.|.++.. |.. .....++|.++++++-.+-.
T Consensus 317 ----~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 317 ----FQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred ----HHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 77888888888887776532 3344555666543 100 11222777788877766543
No 214
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.17 E-value=0.012 Score=40.59 Aligned_cols=41 Identities=20% Similarity=0.019 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHH
Q 005877 124 PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAY 168 (672)
Q Consensus 124 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~ 168 (672)
|++++.+|..|.. .|++++|+.+|+++++ ++|+.++..||.
T Consensus 1 p~~~~~la~~~~~----~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRR----LGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4567788888887 7888888888888776 678888777764
No 215
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.07 E-value=1.3 Score=42.91 Aligned_cols=170 Identities=18% Similarity=0.162 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc---
Q 005877 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-----GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--- 312 (672)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--- 312 (672)
.+.-+++-|..-++. +|+++|++.|++.... -...++..++..+.. .++++.|+...++-+..
T Consensus 33 p~~~LY~~g~~~L~~-----gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk----~~~y~~A~~~~drFi~lyP~ 103 (254)
T COG4105 33 PASELYNEGLTELQK-----GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK----NGEYDLALAYIDRFIRLYPT 103 (254)
T ss_pred CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCC
Confidence 455566666666666 3777777777766543 125677777777776 67777777777777653
Q ss_pred --CCHHHHHHHHHHHHcCCCCCcCCHHHH---HHHHHHHHhC--C---CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHH
Q 005877 313 --QLYSAYNGIGYLYVKGYGVEKKNYTKA---KEYFEKAADN--E---EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVA 382 (672)
Q Consensus 313 --~~~~a~~~Lg~~y~~g~g~~~~~~~~A---~~~~~~a~~~--~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 382 (672)
+-..+++..|..+..+......|..-+ +.-|+..++. + -+++...+- ++...
T Consensus 104 ~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~------------------~~~d~ 165 (254)
T COG4105 104 HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIV------------------KLNDA 165 (254)
T ss_pred CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHH------------------HHHHH
Confidence 234466667777766544333344333 3333333332 1 111111111 11110
Q ss_pred HHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC-----hhHHHHHHHHHHhcCCHHHHHH
Q 005877 383 ANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-----WSSLSRWALESYLKGDVGKAFL 445 (672)
Q Consensus 383 ~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~lg~~~~~~g~~~~A~~ 445 (672)
+ ..--..+|..|.. .+.+--|+..++.+++.-+ .+++..+...|+..|-.++|..
T Consensus 166 L----A~~Em~IaryY~k----r~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~ 225 (254)
T COG4105 166 L----AGHEMAIARYYLK----RGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKK 225 (254)
T ss_pred H----HHHHHHHHHHHHH----hcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHH
Confidence 0 1111234555555 5666666666666665531 3456666666666666665544
No 216
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.02 E-value=0.013 Score=40.50 Aligned_cols=40 Identities=20% Similarity=0.146 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHH
Q 005877 505 HAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGY 548 (672)
Q Consensus 505 ~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~ 548 (672)
.+++.+|..|. ..|++++|+++|+++++ ++++.++..||.
T Consensus 2 ~~~~~la~~~~----~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYR----RLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHH----HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 56778888888 78888888888888876 478888877764
No 217
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.01 E-value=0.2 Score=44.06 Aligned_cols=109 Identities=21% Similarity=0.118 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CH
Q 005877 387 HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-----WSSLSRWALESYLKGDVGKAFLLYSRMAELG-----YE 456 (672)
Q Consensus 387 ~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g-----~~ 456 (672)
.+..++.-|.-... .+++++|++.++....+-| ..+...++.+|+..+++++|+..+++-+++. -+
T Consensus 9 ~~~~ly~~a~~~l~----~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd 84 (142)
T PF13512_consen 9 SPQELYQEAQEALQ----KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD 84 (142)
T ss_pred CHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc
Confidence 56667777777776 8999999999999988875 4578999999999999999999999998875 23
Q ss_pred HHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh
Q 005877 457 VAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE 500 (672)
Q Consensus 457 ~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 500 (672)
-+++..|.+......+.+..-. +...++....+|+..|++.+.
T Consensus 85 Ya~Y~~gL~~~~~~~~~~~~~~-~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 85 YAYYMRGLSYYEQDEGSLQSFF-RSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred HHHHHHHHHHHHHhhhHHhhhc-ccccCcHHHHHHHHHHHHHHH
Confidence 4455555544432211110000 233344455555555555443
No 218
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.98 E-value=0.62 Score=42.65 Aligned_cols=117 Identities=19% Similarity=0.045 Sum_probs=69.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC-
Q 005877 427 LSRWALESYLKGDVGKAFLLYSRMAEL---GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG- 502 (672)
Q Consensus 427 ~~~lg~~~~~~g~~~~A~~~~~~a~~~---g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~- 502 (672)
.+.||....+.|++.+|...|++++.- +++..+..+|..... .++...|...+++.-+-.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa----------------~~~~A~a~~tLe~l~e~~p 155 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA----------------IQEFAAAQQTLEDLMEYNP 155 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh----------------hccHHHHHHHHHHHhhcCC
Confidence 344555555555555555555555332 233333333333322 334445555555433322
Q ss_pred ---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 005877 503 ---NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ-SNAQAMFNLGYMHEHGQGLPLDLHLAKRYY 567 (672)
Q Consensus 503 ---~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 567 (672)
.++.+..+|..|. ..+.+..|..-|+.++.- ..+++-...+.++.. +|...+|..-|
T Consensus 156 a~r~pd~~Ll~aR~la----a~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~----qgr~~ea~aq~ 216 (251)
T COG4700 156 AFRSPDGHLLFARTLA----AQGKYADAESAFEVAISYYPGPQARIYYAEMLAK----QGRLREANAQY 216 (251)
T ss_pred ccCCCCchHHHHHHHH----hcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHH----hcchhHHHHHH
Confidence 3677788888888 788999999999999885 667777777877766 55555555443
No 219
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.95 E-value=0.012 Score=37.95 Aligned_cols=32 Identities=13% Similarity=0.259 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 005877 160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAV 191 (672)
Q Consensus 160 ~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~ 191 (672)
+.+++.+|.+|...+++++|+.+|++++++.|
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 35778888888889999999999998888654
No 220
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.95 E-value=0.0069 Score=39.11 Aligned_cols=30 Identities=27% Similarity=0.234 Sum_probs=23.8
Q ss_pred HHHHHh--CCCHHHHHHHHHHHhccCCHHHHH
Q 005877 151 HHFAAE--GGNIQSKMAVAYTYLRQDMHDKAV 180 (672)
Q Consensus 151 ~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~ 180 (672)
|++|++ |+|+.++++||.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 566665 788888888888888888888875
No 221
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.80 E-value=0.014 Score=37.44 Aligned_cols=32 Identities=9% Similarity=0.205 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 005877 160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAV 191 (672)
Q Consensus 160 ~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~ 191 (672)
+.+++.+|.+|...|++++|+++|++++++.|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 35677888888888888888888888877644
No 222
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.74 E-value=0.021 Score=37.38 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=23.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 005877 162 SKMAVAYTYLRQDMHDKAVKLYAELAEIA 190 (672)
Q Consensus 162 a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~ 190 (672)
++..||.+|...|++++|+++|++++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 46789999999999999999999977543
No 223
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.67 E-value=0.016 Score=37.22 Aligned_cols=32 Identities=38% Similarity=0.637 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877 541 QAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA 576 (672)
Q Consensus 541 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 576 (672)
.+++.+|.+|.. .||+++|+++|+++++++|+
T Consensus 2 ~~~~~lg~~y~~----~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQ----LGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHH----TTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC
Confidence 467778888776 77888888888888877763
No 224
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.53 E-value=0.014 Score=37.71 Aligned_cols=30 Identities=30% Similarity=0.211 Sum_probs=16.9
Q ss_pred HHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHH
Q 005877 531 YMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAK 564 (672)
Q Consensus 531 ~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 564 (672)
|++|++ ++++.++++||.+|.. .||.++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~----~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLN----QGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHH----CcCHHhhc
Confidence 455544 3566666666666654 55555554
No 225
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.50 E-value=1.9 Score=44.83 Aligned_cols=175 Identities=13% Similarity=0.054 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC------ChhHHHHHHHHHHh---cCCHHHHHHHHHHHHHcC---CH
Q 005877 389 KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG------PWSSLSRWALESYL---KGDVGKAFLLYSRMAELG---YE 456 (672)
Q Consensus 389 ~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~---~g~~~~A~~~~~~a~~~g---~~ 456 (672)
+...++=..|.. -+|++.=+.+.+..-... .+...+.+|.++.+ .||.++|+..+..++... .+
T Consensus 142 div~~lllSyRd----iqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~ 217 (374)
T PF13281_consen 142 DIVINLLLSYRD----IQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP 217 (374)
T ss_pred hHHHHHHHHhhh----hhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence 344455556666 778888888877765442 34456778888887 889999999998865543 56
Q ss_pred HHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH--
Q 005877 457 VAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG-NEHAALLIGDAYYYGRGTQRDYERAAEAYMH-- 533 (672)
Q Consensus 457 ~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~-- 533 (672)
+...-+|.+|...... ....+.+.+++|+.+|+++-+.. +.-+-+|++.++. ..+.-.+...-.++
T Consensus 218 d~~gL~GRIyKD~~~~-------s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~----~~g~~~~~~~el~~i~ 286 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLE-------SNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLM----LAGHDFETSEELRKIG 286 (374)
T ss_pred HHHHHHHHHHHHHHHH-------cCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHH----HcCCcccchHHHHHHH
Confidence 6777788888763211 11234567999999999986665 2334457777666 33322211111111
Q ss_pred ------HHhc---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcc
Q 005877 534 ------ARSQ---SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKL 579 (672)
Q Consensus 534 ------A~~~---~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~ 579 (672)
..+. +....++..|...+-.. ..+|+++|.++++++..+.|....
T Consensus 287 ~~l~~llg~kg~~~~~~dYWd~ATl~Ea~v-L~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 287 VKLSSLLGRKGSLEKMQDYWDVATLLEASV-LAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHH-HcCCHHHHHHHHHHHhhcCCcchh
Confidence 1111 23344455555544322 278999999999999999887653
No 226
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.38 E-value=2.9 Score=40.58 Aligned_cols=153 Identities=13% Similarity=0.189 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCcCCHHHHH
Q 005877 227 DEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG---EPQSMEFLGEIYARGAGVERNYTKAL 303 (672)
Q Consensus 227 ~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 303 (672)
+.-++.+++-. ...++.+..+++-. +.+.-.+..+.+.++.+ +|.....||.+-.. .||.+.|.
T Consensus 166 ESsv~lW~KRl----~~Vmy~~~~~llG~-----kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ----~GD~k~a~ 232 (366)
T KOG2796|consen 166 ESSIRLWRKRL----GRVMYSMANCLLGM-----KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQ----IGDIKTAE 232 (366)
T ss_pred hhHHHHHHHHH----HHHHHHHHHHHhcc-----hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHh----cccHHHHH
Confidence 44455555432 34556666666544 58888888999888854 57788889999888 89999999
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCchhcHH
Q 005877 304 EWLTHAARQ--------QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVK 373 (672)
Q Consensus 304 ~~~~~a~~~--------~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~ 373 (672)
.+|++.-+. +......+.+.+|.- .+|+..|...|.+....+ ++.+-++-+.|.+- .++..
T Consensus 233 ~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg-----~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY----lg~l~ 303 (366)
T KOG2796|consen 233 KYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLG-----QNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY----LGKLK 303 (366)
T ss_pred HHHHHHHHHHhhhhccchhHHHHhhhhhheec-----ccchHHHHHHHhhccccCCCchhhhchHHHHHHH----HHHHH
Confidence 999965432 234455566666653 459999999998888775 56666777777776 78999
Q ss_pred HHHHHHHHHHHcCC-----HHHHHHHHHHHHcC
Q 005877 374 LACKYFLVAANAGH-----QKAFYQLAKMFHTG 401 (672)
Q Consensus 374 ~A~~~~~~A~~~~~-----~~a~~~L~~~y~~g 401 (672)
.|++..+.+.+..+ ....++|..||+-.
T Consensus 304 DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL~ 336 (366)
T KOG2796|consen 304 DALKQLEAMVQQDPRHYLHESVLFNLTTMYELE 336 (366)
T ss_pred HHHHHHHHHhccCCccchhhhHHHHHHHHHHHH
Confidence 99999999887543 33456688787753
No 227
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.21 E-value=0.03 Score=36.67 Aligned_cols=28 Identities=39% Similarity=0.535 Sum_probs=20.2
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhc
Q 005877 542 AMFNLGYMHEHGQGLPLDLHLAKRYYDQALEV 573 (672)
Q Consensus 542 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 573 (672)
++.+||.+|.. .||+++|+++|++++.+
T Consensus 1 al~~Lg~~~~~----~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQ----QGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHH----CT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 46778888877 78888888888886654
No 228
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.01 E-value=0.2 Score=48.05 Aligned_cols=89 Identities=19% Similarity=0.203 Sum_probs=63.5
Q ss_pred hHhHHHHHHHHHHHHh-----C-CC---HHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHhcC--------CH
Q 005877 485 AERHQCAHSLWWQASE-----Q-GN---EHAALLIGDAYYYGRGTQRD-------YERAAEAYMHARSQS--------NA 540 (672)
Q Consensus 485 ~~~~~~A~~~~~~a~~-----~-~~---~~a~~~lG~~y~~g~g~~~d-------~~~A~~~~~~A~~~~--------~~ 540 (672)
...+++|+..|..|+- . .+ +....+++|+|. ..+| +.+|.+.|++|.+.. ..
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR----~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYR----DLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh----ccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 3367788887776521 1 22 445669999999 6666 446666677765532 25
Q ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcchh
Q 005877 541 QAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPV 581 (672)
Q Consensus 541 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~ 581 (672)
..+|-+|.++.. .|++++|++||.+.+.....+.-+.
T Consensus 166 ~l~YLigeL~rr----lg~~~eA~~~fs~vi~~~~~s~~~~ 202 (214)
T PF09986_consen 166 TLLYLIGELNRR----LGNYDEAKRWFSRVIGSKKASKEPK 202 (214)
T ss_pred HHHHHHHHHHHH----hCCHHHHHHHHHHHHcCCCCCCcHH
Confidence 778889999887 8999999999999999876655333
No 229
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.88 E-value=0.29 Score=44.73 Aligned_cols=100 Identities=19% Similarity=0.178 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcC------CCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCC--
Q 005877 336 YTKAKEYFEKAADN--EEAGGHYNLGVMYYKG------IGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVG-- 403 (672)
Q Consensus 336 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g------~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g-- 403 (672)
++.|.+.++..... .+++++++-|..++.- .....-+++|+.-|+.|+. ++...+++++|..|..---
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 34566666655443 4677777777666541 0012345566666676655 4567888888888754110
Q ss_pred -----ccCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 005877 404 -----LKKNLHMATALYKLVAERGPWSSLSRWALESY 435 (672)
Q Consensus 404 -----~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~ 435 (672)
....+++|..+|++|.+..|.+..++.+....
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 12336778888888888888777766655443
No 230
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.65 E-value=0.043 Score=34.76 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877 541 QAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA 576 (672)
Q Consensus 541 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 576 (672)
+|++++|.+|.. .|+.++|++.|++.++.-|+
T Consensus 1 ~a~~~~a~~~~~----~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYK----LGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHH----HCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHH----ccCHHHHHHHHHHHHHHCcC
Confidence 366777777766 67777777777777776665
No 231
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.64 E-value=1.7 Score=46.13 Aligned_cols=163 Identities=16% Similarity=0.045 Sum_probs=105.3
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHHHh--CCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC------------
Q 005877 92 TISKMMSAVTNGDVRVMEEATSEVESAAM--EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG------------ 157 (672)
Q Consensus 92 a~~~l~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~------------ 157 (672)
+...|..+-+ .+|.++-++.-++|.+ ++.++|+..|+.--.. ...+|.++|+++++.
T Consensus 171 Aq~IMq~AWR---ERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~------Ti~Eae~l~rqAvkAgE~~lg~s~~~~ 241 (539)
T PF04184_consen 171 AQEIMQKAWR---ERNPQARIKAAKEALEINPDCADAYILLAEEEAS------TIVEAEELLRQAVKAGEASLGKSQFLQ 241 (539)
T ss_pred HHHHHHHHHh---cCCHHHHHHHHHHHHHhhhhhhHHHhhccccccc------CHHHHHHHHHHHHHHHHHhhchhhhhh
Confidence 3344444444 4566777777778654 4678999888875443 568888888887531
Q ss_pred --CC-------------HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhc
Q 005877 158 --GN-------------IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKS 222 (672)
Q Consensus 158 --~~-------------~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 222 (672)
|. +-+...||++..+.|..++|++.++.+++..+... +-++.+++-..+..
T Consensus 242 ~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~--------------~l~IrenLie~LLe 307 (539)
T PF04184_consen 242 HHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD--------------NLNIRENLIEALLE 307 (539)
T ss_pred cccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc--------------hhhHHHHHHHHHHh
Confidence 11 23456789999999999999999999987543211 22455678888889
Q ss_pred cCChHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcC-----------CCcccCHHHHHHHHHHHHHcC
Q 005877 223 RGEDDEAFQILEYQAQK---GNAGAMYKIGLFYYFGL-----------RGLRRDRTKALMWFSKAADKG 277 (672)
Q Consensus 223 ~g~~~~Ai~~~~~aa~~---~~~~a~~~Lg~~y~~~~-----------~~~~~~~~~A~~~~~~a~~~~ 277 (672)
.+.|.++...+.+--+. ..+...|.-+.+-.... +|.......|++...+|++.+
T Consensus 308 lq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefN 376 (539)
T PF04184_consen 308 LQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFN 376 (539)
T ss_pred cCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhC
Confidence 99999999888886443 34444554444433221 112222345677788887743
No 232
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.59 E-value=0.076 Score=33.98 Aligned_cols=31 Identities=10% Similarity=0.186 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 005877 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAV 191 (672)
Q Consensus 161 ~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~ 191 (672)
++++.+|.+|...|++++|+++|+++++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4678889999999999999999999888764
No 233
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.48 E-value=0.04 Score=34.93 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 005877 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAV 191 (672)
Q Consensus 161 ~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~ 191 (672)
++++.+|.+|...|++++|+..|+++++..|
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 4788899999999999999999999887644
No 234
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.48 E-value=2.3 Score=45.14 Aligned_cols=109 Identities=13% Similarity=0.010 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc---CC
Q 005877 315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA---GH 387 (672)
Q Consensus 315 ~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~---~~ 387 (672)
+.+...|+++... .|..++|++.|+..++. ++-..+++|-.+++. .+.+.++...+.+=-+. ..
T Consensus 259 ~y~KrRLAmCark-----lGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe----lq~Yad~q~lL~kYdDi~lpkS 329 (539)
T PF04184_consen 259 VYAKRRLAMCARK-----LGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE----LQAYADVQALLAKYDDISLPKS 329 (539)
T ss_pred hhhHHHHHHHHHH-----hCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh----cCCHHHHHHHHHHhccccCCch
Confidence 3455678888775 57889999999998864 345688888888888 88888888777774322 22
Q ss_pred HHHHHHHHHHHHcCCC------------ccCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 005877 388 QKAFYQLAKMFHTGVG------------LKKNLHMATALYKLVAERGPWSSLSRWAL 432 (672)
Q Consensus 388 ~~a~~~L~~~y~~g~g------------~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 432 (672)
+...|.-+.+-....+ ..-.-..|++...+|++.+|-..-+-|+.
T Consensus 330 Ati~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~ 386 (539)
T PF04184_consen 330 ATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEM 386 (539)
T ss_pred HHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhcc
Confidence 3333444443332221 11223457888999998887555444443
No 235
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.43 E-value=6.2 Score=39.75 Aligned_cols=116 Identities=19% Similarity=0.152 Sum_probs=58.6
Q ss_pred cCCHHHHHHHHHHHHhCC---C-------HHHHHHHHHHHHcCCCchh-cHHHHHHHHHHHHHc----CC----------
Q 005877 333 KKNYTKAKEYFEKAADNE---E-------AGGHYNLGVMYYKGIGVKR-DVKLACKYFLVAANA----GH---------- 387 (672)
Q Consensus 333 ~~~~~~A~~~~~~a~~~~---~-------~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~~A~~~----~~---------- 387 (672)
+||.+.|..++.|+-... + +..+|++|.-... .+ +++.|+.|+++|.+. +.
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~----~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLS----KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 346666666666654321 2 2334455554444 45 677777777766542 10
Q ss_pred --HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHH-hcCCHHHHHHHHHHHHHc
Q 005877 388 --QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG-PWSSLSRWALESY-LKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 388 --~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~ 453 (672)
......|+..|.. ++.....++|..+.+.+-... +....+.+..... ..++.+.+.+.+.+++..
T Consensus 82 lr~~iL~~La~~~l~-~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 82 LRLSILRLLANAYLE-WDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 1234455555543 233445556666666553332 3233333333322 246677777777666544
No 236
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.21 E-value=8.9 Score=40.62 Aligned_cols=406 Identities=13% Similarity=0.015 Sum_probs=222.7
Q ss_pred HHHHHHHHhhcCCcccCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHhhhhccCC
Q 005877 126 ARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGG-----NIQSKMAVAYTYLR-QDMHDKAVKLYAELAEIAVNSFLISKD 199 (672)
Q Consensus 126 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~~-----~~~a~~~Lg~~y~~-~~~~~~A~~~y~~a~~~~~~~~~~~~~ 199 (672)
+...++..+.. ..+.+..+++++.+-..... .+.....||.+.+. .+|.+-|...++++-.+...
T Consensus 9 aLlGlAe~~rt--~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~------- 79 (629)
T KOG2300|consen 9 ALLGLAEHFRT--SGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKS------- 79 (629)
T ss_pred HHHHHHHHHhh--cCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcc-------
Confidence 33444444444 12447888888887655422 23556677877654 78999999999998765421
Q ss_pred CCcccchhcccCchhhhhHhhhccC-ChHHHHHHHHHHHHc--CC----HHHHHHHHHHHHhcCCCcccCHHHHHHHHHH
Q 005877 200 SPVIEPIRIHNGAEENKGALRKSRG-EDDEAFQILEYQAQK--GN----AGAMYKIGLFYYFGLRGLRRDRTKALMWFSK 272 (672)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~~~~~~~g-~~~~Ai~~~~~aa~~--~~----~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~ 272 (672)
-|.. .+...++..-++.++.... .+..+-..++++++. +. -...+.|++++.-. +|+.-|++.+.-
T Consensus 80 ip~f--ydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~id-----kD~~sA~elLav 152 (629)
T KOG2300|consen 80 IPSF--YDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIID-----KDFPSALELLAV 152 (629)
T ss_pred cccH--HhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhh-----ccchhHHHHHhc
Confidence 1111 1333344445666666555 778888889988766 33 35677788887544 799999998654
Q ss_pred HHHcCCH------HHHHHH--HHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHH-------HHHHHHHHHHcCCCCCcCC
Q 005877 273 AADKGEP------QSMEFL--GEIYARGAGVERNYTKALEWLTHAARQ--QLYS-------AYNGIGYLYVKGYGVEKKN 335 (672)
Q Consensus 273 a~~~~~~------~a~~~L--g~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~-------a~~~Lg~~y~~g~g~~~~~ 335 (672)
....-++ ...+.+ +.+..... ...|.+++..--.+..+. +++. -+..+-..|..-.|-.+ .
T Consensus 153 ga~sAd~~~~~ylr~~ftls~~~ll~me~-d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~r-t 230 (629)
T KOG2300|consen 153 GAESADHICFPYLRMLFTLSMLMLLIMER-DDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVR-T 230 (629)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchh-h
Confidence 4332221 111111 11222200 123333444333333332 2222 12334444543222222 3
Q ss_pred HHHHHHHHHHHHhCCCH---------------HHHHH------HHHHHHcCC---CchhcHHHHHHHHHHHHHc------
Q 005877 336 YTKAKEYFEKAADNEEA---------------GGHYN------LGVMYYKGI---GVKRDVKLACKYFLVAANA------ 385 (672)
Q Consensus 336 ~~~A~~~~~~a~~~~~~---------------~a~~~------Lg~~y~~g~---g~~~~~~~A~~~~~~A~~~------ 385 (672)
...+++-+++.+....+ .-..+ -+.+|..-. -+.|=++++.++-.+++..
T Consensus 231 ~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq 310 (629)
T KOG2300|consen 231 VKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQ 310 (629)
T ss_pred hHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhccc
Confidence 44555555555543111 11100 111222100 1356677777777776542
Q ss_pred -C-CHHHHHHHHHHHHcCC----CccCCHHHHHHHHHHHHHcC---C---------hhHHHHHHHHHHhcCCHHHHHHHH
Q 005877 386 -G-HQKAFYQLAKMFHTGV----GLKKNLHMATALYKLVAERG---P---------WSSLSRWALESYLKGDVGKAFLLY 447 (672)
Q Consensus 386 -~-~~~a~~~L~~~y~~g~----g~~~~~~~A~~~~~~a~~~~---~---------~~a~~~lg~~~~~~g~~~~A~~~~ 447 (672)
. .......+-.+..+-+ -+.+++.+|++-...+.+.. | +....-+|.....-+-++.|...|
T Consensus 311 ~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf 390 (629)
T KOG2300|consen 311 ADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHF 390 (629)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHH
Confidence 1 1222222221111111 14789999998887776543 2 122444566666677888898888
Q ss_pred HHHHHcC-----CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC----------HHHHHHHHH
Q 005877 448 SRMAELG-----YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN----------EHAALLIGD 512 (672)
Q Consensus 448 ~~a~~~g-----~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~----------~~a~~~lG~ 512 (672)
..|.+.- ...+..|+|.+|-+.+. ..++-++++. +.+.+ +.+.|-.|.
T Consensus 391 ~~a~k~t~~~dl~a~~nlnlAi~YL~~~~-------------~ed~y~~ld~----i~p~nt~s~ssq~l~a~~~~v~gl 453 (629)
T KOG2300|consen 391 IEATKLTESIDLQAFCNLNLAISYLRIGD-------------AEDLYKALDL----IGPLNTNSLSSQRLEASILYVYGL 453 (629)
T ss_pred HHHHHhhhHHHHHHHHHHhHHHHHHHhcc-------------HHHHHHHHHh----cCCCCCCcchHHHHHHHHHHHHHH
Confidence 8886553 23456788988876222 3333333332 22221 345566677
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhcCCHHHH--------HHHHHHHHcCCCCCCCHHHHHHHHHHHHhcC
Q 005877 513 AYYYGRGTQRDYERAAEAYMHARSQSNAQAM--------FNLGYMHEHGQGLPLDLHLAKRYYDQALEVD 574 (672)
Q Consensus 513 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~a~--------~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 574 (672)
.-+ .++++.+|...+++.++..|++-. .-||.+.. +.||-.++..-.+-++.+.
T Consensus 454 faf----~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~l----slgn~~es~nmvrpamqlA 515 (629)
T KOG2300|consen 454 FAF----KQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFL----SLGNTVESRNMVRPAMQLA 515 (629)
T ss_pred HHH----HhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHH----HhcchHHHHhccchHHHHH
Confidence 667 789999999999999887655444 44454443 3788888888888887764
No 237
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.19 E-value=0.47 Score=43.87 Aligned_cols=103 Identities=20% Similarity=0.154 Sum_probs=70.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHH
Q 005877 427 LSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHA 506 (672)
Q Consensus 427 ~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a 506 (672)
+-.-|.-++..|+|++|..-|..|++.-.+...---+.+|
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly---------------------------------------- 137 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILY---------------------------------------- 137 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHH----------------------------------------
Confidence 3345677888999999999999988864332221111111
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877 507 ALLIGDAYYYGRGTQRDYERAAEAYMHARSQS--NAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK 578 (672)
Q Consensus 507 ~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 578 (672)
.+-|.+.. ..+..+.|+.--.+|++.+ .-.|+..-+..|++ .-.++.|++-|++.++.+|...
T Consensus 138 -~Nraaa~i----Kl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek----~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 138 -SNRAAALI----KLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK----MEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred -hhhHHHHH----HhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHhCcchH
Confidence 23344555 5667777888888887763 46677777888887 6778888888888888888754
No 238
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.07 E-value=0.32 Score=44.45 Aligned_cols=84 Identities=14% Similarity=0.099 Sum_probs=55.9
Q ss_pred HHHHHHHHHH--HHhCCChHHHHHHHHHhhcCCcccCC-------HHHHHHHHHHHHh--CCCHHHHHHHHHHHhcc---
Q 005877 108 MEEATSEVES--AAMEGDPHARSVLGFLYGMGMMRERN-------KGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQ--- 173 (672)
Q Consensus 108 ~~~A~~~~~~--a~~~~~~~a~~~Lg~~y~~G~g~~~d-------~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~--- 173 (672)
|+.|.+.++. ..+|.+++++++-|..+.. +..-+. +++|+.=|++|+. |+..+++..+|..|...
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLE-LAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLE-LAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH-HHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHH-HHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 5788888888 5677889999988877654 211222 3455555666544 78899999999999873
Q ss_pred --------CCHHHHHHHHHHHHHHHHh
Q 005877 174 --------DMHDKAVKLYAELAEIAVN 192 (672)
Q Consensus 174 --------~~~~~A~~~y~~a~~~~~~ 192 (672)
..+++|..+|+++.+..|.
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ 112 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPN 112 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2367777777777776654
No 239
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.01 E-value=0.81 Score=42.33 Aligned_cols=95 Identities=17% Similarity=0.036 Sum_probs=68.6
Q ss_pred HHHHHHHHcCCCchhcHHHHHHHHHHHHHcC-C----HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChh-HHHH
Q 005877 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANAG-H----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS-SLSR 429 (672)
Q Consensus 356 ~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~----~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~-a~~~ 429 (672)
..++..+.. .+++++|...++.++... + ..+-.+|+++... ++.+++|+..+....+.+... ..-.
T Consensus 93 L~lAk~~ve----~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q----~~k~D~AL~~L~t~~~~~w~~~~~el 164 (207)
T COG2976 93 LELAKAEVE----ANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ----QKKADAALKTLDTIKEESWAAIVAEL 164 (207)
T ss_pred HHHHHHHHh----hccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH----hhhHHHHHHHHhccccccHHHHHHHH
Confidence 345556666 778888888888776432 2 3566788888876 888999988887766554333 2445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCHHH
Q 005877 430 WALESYLKGDVGKAFLLYSRMAELGYEVA 458 (672)
Q Consensus 430 lg~~~~~~g~~~~A~~~~~~a~~~g~~~a 458 (672)
.|.++..+||.++|...|++|++.+...+
T Consensus 165 rGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 165 RGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred hhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 68899999999999999999988864333
No 240
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.87 E-value=0.81 Score=42.37 Aligned_cols=81 Identities=16% Similarity=0.049 Sum_probs=39.5
Q ss_pred hhcHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCC
Q 005877 369 KRDVKLACKYFLVAANAGHQ-------KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGD 439 (672)
Q Consensus 369 ~~~~~~A~~~~~~A~~~~~~-------~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~ 439 (672)
.|++.+|..-|..|++.-++ ..+.+-|.+... .+.++.|+.-+.++++.+| ..++.+.+.+|.+...
T Consensus 108 ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iK----l~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 108 NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIK----LRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHH----hhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 55556665555555554322 122233333333 4455555555555555553 2344445555555555
Q ss_pred HHHHHHHHHHHHHc
Q 005877 440 VGKAFLLYSRMAEL 453 (672)
Q Consensus 440 ~~~A~~~~~~a~~~ 453 (672)
++.|+.-|++.++.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555555444
No 241
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.79 E-value=3.9 Score=39.69 Aligned_cols=42 Identities=24% Similarity=0.286 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCchhcHHHHHHHHH
Q 005877 335 NYTKAKEYFEKAADNE---EAGGHYNLGVMYYKGIGVKRDVKLACKYFL 380 (672)
Q Consensus 335 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 380 (672)
.|.-+++.+.+.++.+ ++.....||.+-++ -||.+-|..+|+
T Consensus 192 Ey~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ----~GD~k~a~~yf~ 236 (366)
T KOG2796|consen 192 EYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQ----IGDIKTAEKYFQ 236 (366)
T ss_pred hhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHh----cccHHHHHHHHH
Confidence 5555555555555433 33344445555555 455555555555
No 242
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.75 E-value=10 Score=39.61 Aligned_cols=27 Identities=26% Similarity=0.198 Sum_probs=20.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877 428 SRWALESYLKGDVGKAFLLYSRMAELG 454 (672)
Q Consensus 428 ~~lg~~~~~~g~~~~A~~~~~~a~~~g 454 (672)
..++.+....||+++|+.+++++....
T Consensus 309 ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 309 ATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 344555667889999999999988774
No 243
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.69 E-value=1.2 Score=41.30 Aligned_cols=90 Identities=18% Similarity=0.077 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC
Q 005877 428 SRWALESYLKGDVGKAFLLYSRMAELGY-----EVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (672)
Q Consensus 428 ~~lg~~~~~~g~~~~A~~~~~~a~~~g~-----~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (672)
..++..+...+++++|...++.++..-- ..+-.+||.++.. .+.+++|+..+..-.+.+
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q----------------~~k~D~AL~~L~t~~~~~ 156 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ----------------QKKADAALKTLDTIKEES 156 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH----------------hhhHHHHHHHHhcccccc
Confidence 3445556666777777777766653321 1222234444433 444444444444332322
Q ss_pred CHH-HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 005877 503 NEH-AALLIGDAYYYGRGTQRDYERAAEAYMHARSQ 537 (672)
Q Consensus 503 ~~~-a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~ 537 (672)
... ..-.-|+++. ..+|-++|+.-|++|++.
T Consensus 157 w~~~~~elrGDill----~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 157 WAAIVAELRGDILL----AKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHhhhHHH----HcCchHHHHHHHHHHHHc
Confidence 211 2224566666 666666666666666655
No 244
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.67 E-value=1.6 Score=41.73 Aligned_cols=126 Identities=17% Similarity=0.089 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCH
Q 005877 425 SSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNE 504 (672)
Q Consensus 425 ~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 504 (672)
.++..-|+.+|..|+|.+|...|..|+-- .-||- + ...+.+. +|.+. +.-..
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~-----l~~L~--l------------kEkP~e~-------eW~eL--dk~~t 230 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIIC-----LRNLQ--L------------KEKPGEP-------EWLEL--DKMIT 230 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHH-----HHHHH--h------------ccCCCCh-------HHHHH--HHhhh
Confidence 35667788899999999999999888431 11110 0 0000000 11111 11123
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcchhH
Q 005877 505 HAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPVT 582 (672)
Q Consensus 505 ~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~ 582 (672)
.-+.|+..|+. ..++|-+++++-...+.. +|..|+|.-|..+.. ..|..+|..=+.++++++|...-.+.
T Consensus 231 pLllNy~QC~L----~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa----~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 231 PLLLNYCQCLL----KKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAA----VWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred HHHHhHHHHHh----hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh----hcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 34568899999 889999999998888764 789999999999987 67999999999999999998765555
Q ss_pred HHHH
Q 005877 583 LALT 586 (672)
Q Consensus 583 ~~~~ 586 (672)
..+-
T Consensus 303 rElr 306 (329)
T KOG0545|consen 303 RELR 306 (329)
T ss_pred HHHH
Confidence 4443
No 245
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.25 E-value=0.67 Score=44.51 Aligned_cols=49 Identities=14% Similarity=0.015 Sum_probs=31.5
Q ss_pred CcccCHHHHHHHHHHHHHc-----C----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH
Q 005877 258 GLRRDRTKALMWFSKAADK-----G----EPQSMEFLGEIYARGAGVERNYTKALEWLTHAA 310 (672)
Q Consensus 258 ~~~~~~~~A~~~~~~a~~~-----~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 310 (672)
+-.+++++|++.|..|+-. . -+.....++.+|.. .++.+....++++|+
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~----~~~~~~E~~fl~~Al 145 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRD----LGDEENEKRFLRKAL 145 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc----cCCHHHHHHHHHHHH
Confidence 3456888899888887642 1 14566777888887 677555444444444
No 246
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.19 E-value=0.32 Score=48.55 Aligned_cols=93 Identities=19% Similarity=0.131 Sum_probs=68.7
Q ss_pred HHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--CHHHHHHH
Q 005877 319 NGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQL 394 (672)
Q Consensus 319 ~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L 394 (672)
-.-|.-|+. +|.|++|+++|.+++... ++..+.|-+..|++ .+.+..|..-...|+..+ ...|+.+-
T Consensus 101 KE~GN~yFK-----QgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk----~K~FA~AE~DC~~AiaLd~~Y~KAYSRR 171 (536)
T KOG4648|consen 101 KERGNTYFK-----QGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK----QKSFAQAEEDCEAAIALDKLYVKAYSRR 171 (536)
T ss_pred HHhhhhhhh-----ccchhHHHHHhhhhhccCCCCccchhhHHHHHHH----HHHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence 344566664 678899999998887764 77788888888888 888888888888877655 34566666
Q ss_pred HHHHHcCCCccCCHHHHHHHHHHHHHcCCh
Q 005877 395 AKMFHTGVGLKKNLHMATALYKLVAERGPW 424 (672)
Q Consensus 395 ~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~ 424 (672)
+..-.. .+...+|..-++.+++..|.
T Consensus 172 ~~AR~~----Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 172 MQARES----LGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHH----HhhHHHHHHhHHHHHhhCcc
Confidence 655555 67777788888888777654
No 247
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=93.17 E-value=19 Score=41.13 Aligned_cols=85 Identities=13% Similarity=0.039 Sum_probs=66.1
Q ss_pred ChhhHHHHHHHHHHHHh--CCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHH
Q 005877 104 DVRVMEEATSEVESAAM--EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKA 179 (672)
Q Consensus 104 ~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A 179 (672)
+.+++.+|.+...+... |+.+.+...-|..... .+..++|..+++.... +.+...+-.+-.+|...+..++|
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r----~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFR----LGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH----hcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 36889999999999443 4556677777777777 7888899977776544 35677888899999999999999
Q ss_pred HHHHHHHHHHHHh
Q 005877 180 VKLYAELAEIAVN 192 (672)
Q Consensus 180 ~~~y~~a~~~~~~ 192 (672)
..+|+++....|+
T Consensus 97 ~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 97 VHLYERANQKYPS 109 (932)
T ss_pred HHHHHHHHhhCCc
Confidence 9999999876543
No 248
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=92.12 E-value=16 Score=37.70 Aligned_cols=177 Identities=16% Similarity=0.038 Sum_probs=87.9
Q ss_pred hhhHHHHHHHHHHHHhC--CChHHHHHH--HHHhhcCCcccCCHHHHHHHHHHHHhCCCHHH-HHHHHHHHhc---cCCH
Q 005877 105 VRVMEEATSEVESAAME--GDPHARSVL--GFLYGMGMMRERNKGKAFLYHHFAAEGGNIQS-KMAVAYTYLR---QDMH 176 (672)
Q Consensus 105 ~~~~~~A~~~~~~a~~~--~~~~a~~~L--g~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a-~~~Lg~~y~~---~~~~ 176 (672)
.||-..|.+.-.++... .+.+.+..| +..-.- .||++.|.+-|+-.++ +++. +..|--+|+. .|+.
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~----eG~~~~Ar~kfeAMl~--dPEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALL----EGDYEDARKKFEAMLD--DPETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHh----cCchHHHHHHHHHHhc--ChHHHHHhHHHHHHHHHhcccH
Confidence 45666666666664422 333333332 222222 6788888877775443 3322 2334344443 6888
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHH-----cC---CHHHHHHH
Q 005877 177 DKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ-----KG---NAGAMYKI 248 (672)
Q Consensus 177 ~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~-----~~---~~~a~~~L 248 (672)
+.|+.|-+++..+.+.- .++....-.-....|+.+.|+++.+..-. ++ -..+.+.-
T Consensus 171 eaAr~yAe~Aa~~Ap~l----------------~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLt 234 (531)
T COG3898 171 EAARHYAERAAEKAPQL----------------PWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLT 234 (531)
T ss_pred HHHHHHHHHHHhhccCC----------------chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Confidence 88888888877654320 11111222234567788888887776421 11 11222222
Q ss_pred HHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH
Q 005877 249 GLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR 311 (672)
Q Consensus 249 g~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 311 (672)
+..... +..|...|...-..+.+. +...+-..-+..+.. .++..|+-+.++.+=+
T Consensus 235 AkA~s~----ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~----d~~~rKg~~ilE~aWK 291 (531)
T COG3898 235 AKAMSL----LDADPASARDDALEANKLAPDLVPAAVVAARALFR----DGNLRKGSKILETAWK 291 (531)
T ss_pred HHHHHH----hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHh----ccchhhhhhHHHHHHh
Confidence 222111 112555555555555543 334444455555555 5666666666655544
No 249
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=91.79 E-value=1.5 Score=41.90 Aligned_cols=87 Identities=14% Similarity=0.020 Sum_probs=71.6
Q ss_pred CCchHhHHHHHHHHHHHHhCCCHH-HH-HHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCC
Q 005877 482 CTDAERHQCAHSLWWQASEQGNEH-AA-LLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLP 557 (672)
Q Consensus 482 ~~~~~~~~~A~~~~~~a~~~~~~~-a~-~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~ 557 (672)
+...+++..|+..|.+++-..+.. ++ -+-+.+|+ +.++++....--++|++. +...+.|.||..... .
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchl----k~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~----s 91 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHL----KLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ----S 91 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHH----HhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh----h
Confidence 444778999999999998877644 33 38999999 889999999999999885 678899999988766 7
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 005877 558 LDLHLAKRYYDQALEVDPA 576 (672)
Q Consensus 558 ~d~~~A~~~~~~A~~~~~~ 576 (672)
+.++.|+..+.+|..+...
T Consensus 92 ~~~~eaI~~Lqra~sl~r~ 110 (284)
T KOG4642|consen 92 KGYDEAIKVLQRAYSLLRE 110 (284)
T ss_pred ccccHHHHHHHHHHHHHhc
Confidence 8899999999999766433
No 250
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.68 E-value=10 Score=34.61 Aligned_cols=131 Identities=23% Similarity=0.247 Sum_probs=84.0
Q ss_pred cCCHHHHHHHHHHHHhCC---C-HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhh
Q 005877 141 ERNKGKAFLYHHFAAEGG---N-IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENK 216 (672)
Q Consensus 141 ~~d~~~A~~~~~~A~~~~---~-~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 216 (672)
.+..++|+.-|....+.| . .-+++..|.+..+.|+...|+.+|.++....+ .+...| +-+...-
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~----------~P~~~r--d~ARlra 138 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS----------IPQIGR--DLARLRA 138 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC----------Ccchhh--HHHHHHH
Confidence 345566666666555532 2 36778888888888888888888888765321 111110 1111123
Q ss_pred hHhhhccCChHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-CCHHHHHHHHHH
Q 005877 217 GALRKSRGEDDEAFQILEYQAQKGNA---GAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-GEPQSMEFLGEI 288 (672)
Q Consensus 217 ~~~~~~~g~~~~Ai~~~~~aa~~~~~---~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~ 288 (672)
+.+....|.|++.....+..+-.+++ .+.-.||..-+.. +|+.+|..||.+.++. +.|....+-+.+
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~ka-----gd~a~A~~~F~qia~Da~aprnirqRAq~ 209 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKA-----GDFAKAKSWFVQIANDAQAPRNIRQRAQI 209 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhc-----cchHHHHHHHHHHHccccCcHHHHHHHHH
Confidence 55566788888888888887777654 5677788877777 4999999999998764 344444444433
No 251
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.55 E-value=0.48 Score=47.35 Aligned_cols=91 Identities=14% Similarity=0.037 Sum_probs=76.2
Q ss_pred HHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC--ChhHHHHHH
Q 005877 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWA 431 (672)
Q Consensus 356 ~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 431 (672)
-.-|.-|++ +|.|++|+.+|.+++.. .++....|-+..|.. .+.+..|..-+..|+..+ ...+|.+.+
T Consensus 101 KE~GN~yFK----QgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk----~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 101 KERGNTYFK----QGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK----QKSFAQAEEDCEAAIALDKLYVKAYSRRM 172 (536)
T ss_pred HHhhhhhhh----ccchhHHHHHhhhhhccCCCCccchhhHHHHHHH----HHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 345778888 89999999999998764 367777788888887 788888888888887776 467899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 005877 432 LESYLKGDVGKAFLLYSRMAELG 454 (672)
Q Consensus 432 ~~~~~~g~~~~A~~~~~~a~~~g 454 (672)
.+....|+..+|-+-++.+++..
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALE 195 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhC
Confidence 99999999999999999997765
No 252
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.09 E-value=12 Score=34.15 Aligned_cols=114 Identities=18% Similarity=0.194 Sum_probs=63.3
Q ss_pred ccCChHHHHHHHHHHHHcC----CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcC-CH-----HHHHHHHHHHHc
Q 005877 222 SRGEDDEAFQILEYQAQKG----NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG-EP-----QSMEFLGEIYAR 291 (672)
Q Consensus 222 ~~g~~~~Ai~~~~~aa~~~----~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~-~~-----~a~~~Lg~~y~~ 291 (672)
+.+..++|+.-|....+.| ..-+.+..|.+..+. ++...|+..|..+.+.. .| .+...-+.++.+
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~k-----gdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQK-----GDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhc-----ccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc
Confidence 3445566666666665554 234566666666655 47777777777765531 22 233344444444
Q ss_pred CCCCcCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC
Q 005877 292 GAGVERNYTKALEWLTHAARQQL---YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN 349 (672)
Q Consensus 292 g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~ 349 (672)
.+.|+.-..-.+...-.++ ..+...||..-.. .|++.+|.++|.+.+..
T Consensus 145 ----~gsy~dV~srvepLa~d~n~mR~sArEALglAa~k-----agd~a~A~~~F~qia~D 196 (221)
T COG4649 145 ----NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYK-----AGDFAKAKSWFVQIAND 196 (221)
T ss_pred ----cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHh-----ccchHHHHHHHHHHHcc
Confidence 5556555554444433333 2345566665543 45777777777766553
No 253
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=90.71 E-value=0.53 Score=46.36 Aligned_cols=79 Identities=18% Similarity=0.044 Sum_probs=58.9
Q ss_pred cCchHHHHHHHHHHHhcCCChhhHHHHHHHHHH--HHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCH
Q 005877 85 INGSYYITISKMMSAVTNGDVRVMEEATSEVES--AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNI 160 (672)
Q Consensus 85 ~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~--a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~ 160 (672)
..+....++..+..+......|+.++|..+|+- +..+.+++++...|..-.. .++.-+|-.||.+|.. ++|.
T Consensus 109 ~pa~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~----~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 109 DPAKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREM----HNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred CchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh----hhhhHhhhhhhheeeeeCCCch
Confidence 344555666666666666667888899999988 4567889999888888777 6788888888888764 7888
Q ss_pred HHHHHHH
Q 005877 161 QSKMAVA 167 (672)
Q Consensus 161 ~a~~~Lg 167 (672)
+|+.+-+
T Consensus 185 eALvnR~ 191 (472)
T KOG3824|consen 185 EALVNRA 191 (472)
T ss_pred HHHhhhh
Confidence 8776544
No 254
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.57 E-value=0.58 Score=31.25 Aligned_cols=32 Identities=25% Similarity=0.251 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Q 005877 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVN 192 (672)
Q Consensus 161 ~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~ 192 (672)
.++.+||.+|...|++++|+.+++++++....
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 57788999999999999999999999886543
No 255
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=90.35 E-value=0.39 Score=29.23 Aligned_cols=30 Identities=43% Similarity=0.649 Sum_probs=17.5
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCC
Q 005877 542 AMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDP 575 (672)
Q Consensus 542 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 575 (672)
+++++|.+|.. .++++.|..+|+++++.+|
T Consensus 3 ~~~~~a~~~~~----~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLK----LGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHH----HhhHHHHHHHHHHHHccCC
Confidence 44555665554 5566666666666665544
No 256
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.41 E-value=0.65 Score=30.99 Aligned_cols=28 Identities=32% Similarity=0.300 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 005877 505 HAALLIGDAYYYGRGTQRDYERAAEAYMHARS 536 (672)
Q Consensus 505 ~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~ 536 (672)
.++.+||.+|. ..+++++|..+++++++
T Consensus 3 ~~~~~la~~~~----~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYR----AQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHH----HCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----hhhhcchhhHHHHHHHH
Confidence 34556666666 55666666666666543
No 257
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=89.15 E-value=2.6 Score=37.65 Aligned_cols=66 Identities=11% Similarity=-0.035 Sum_probs=52.4
Q ss_pred HHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhh
Q 005877 126 ARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFL 195 (672)
Q Consensus 126 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~ 195 (672)
+...++..+.. .+++++|+.++++++. +-+..++..|-.+|...|+...|+..|++..+.-.....
T Consensus 64 ~~~~l~~~~~~----~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg 131 (146)
T PF03704_consen 64 ALERLAEALLE----AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELG 131 (146)
T ss_dssp HHHHHHHHHHH----TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHh----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhC
Confidence 44556666666 8899999999999876 788999999999999999999999999998876554443
No 258
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=89.04 E-value=10 Score=38.18 Aligned_cols=110 Identities=18% Similarity=0.212 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhCC--CHHHHHHHHHH-HHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHH
Q 005877 336 YTKAKEYFEKAADNE--EAGGHYNLGVM-YYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHM 410 (672)
Q Consensus 336 ~~~A~~~~~~a~~~~--~~~a~~~Lg~~-y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~ 410 (672)
.+.|...|++|.+.+ ....+...|.+ |.. .+|.+.|.+.|+.+++. .+...+......+.. .+|.+.
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~----~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~----~~d~~~ 88 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYC----NKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK----LNDINN 88 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT----CS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH----TT-HHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----hCcHHH
Confidence 445555555554332 23444444444 222 23444455555555542 222222222223332 445555
Q ss_pred HHHHHHHHHHcCChh-----HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 411 ATALYKLVAERGPWS-----SLSRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 411 A~~~~~~a~~~~~~~-----a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
|..+|++++..-+.. .+......-..-|+.+.....++++.+.
T Consensus 89 aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 89 ARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 555555555443221 1222222233446666666666666544
No 259
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=88.84 E-value=11 Score=37.90 Aligned_cols=128 Identities=15% Similarity=0.109 Sum_probs=85.3
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHH
Q 005877 281 SMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHY 356 (672)
Q Consensus 281 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~ 356 (672)
++..+.....+ .+..+.|...|++|.+.+ ....+...+.+... ..+|.+.|...|+++++. .+.+.+.
T Consensus 3 v~i~~m~~~~r----~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~----~~~d~~~A~~Ife~glk~f~~~~~~~~ 74 (280)
T PF05843_consen 3 VWIQYMRFMRR----TEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY----CNKDPKRARKIFERGLKKFPSDPDFWL 74 (280)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH----TCS-HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHH----hCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 44555566666 778899999999998764 35566677777443 234777799999999886 5677777
Q ss_pred HHHHHHHcCCCchhcHHHHHHHHHHHHHcCC-H----HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh
Q 005877 357 NLGVMYYKGIGVKRDVKLACKYFLVAANAGH-Q----KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW 424 (672)
Q Consensus 357 ~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~-~----~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~ 424 (672)
.....+.. .+|.+.|...|++++..-. . ..+......-.. -||.+.....++++.+.-+.
T Consensus 75 ~Y~~~l~~----~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~----~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 75 EYLDFLIK----LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESK----YGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHHHHH----TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHH----hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhh
Confidence 77777777 7899999999999976422 1 223222222222 56888888888888776544
No 260
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=88.50 E-value=11 Score=33.56 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005877 388 QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW--SSLSRWALESYLKGDVGKAFLLYSRMA 451 (672)
Q Consensus 388 ~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~~~~~g~~~~A~~~~~~a~ 451 (672)
..+...++..+.. .+++++|+.++++++...|. .++..+-.++...|++.+|+..|++..
T Consensus 62 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 62 LDALERLAEALLE----AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4556677777776 89999999999999999864 467788889999999999999999874
No 261
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.85 E-value=3.3 Score=38.85 Aligned_cols=70 Identities=17% Similarity=0.101 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHH---cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC------ChhHHHHHHHHHHhcCCHHH
Q 005877 372 VKLACKYFLVAAN---AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG------PWSSLSRWALESYLKGDVGK 442 (672)
Q Consensus 372 ~~~A~~~~~~A~~---~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~~g~~~~ 442 (672)
-+.|..-|.++-. ...++.++.||..|. ..|.+||+.++-++++.. +++.+..|+.+++..|++++
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-----krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-----KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3566666666543 347888888888887 588899999998888765 35678888899999999988
Q ss_pred HHHH
Q 005877 443 AFLL 446 (672)
Q Consensus 443 A~~~ 446 (672)
|-.|
T Consensus 197 AYiw 200 (203)
T PF11207_consen 197 AYIW 200 (203)
T ss_pred hhhh
Confidence 8654
No 262
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.71 E-value=11 Score=37.65 Aligned_cols=81 Identities=16% Similarity=0.089 Sum_probs=53.0
Q ss_pred hhhHHHHHHHHHHH--HhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHH----------------------HH------
Q 005877 105 VRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHH----------------------FA------ 154 (672)
Q Consensus 105 ~~~~~~A~~~~~~a--~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~----------------------~A------ 154 (672)
.+++.+|...|..+ ..+.+.++...|+.+|.. .++.+.|...+. ++
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~----~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLA----AGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH----cCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 57777888888774 344667777888887776 455544333333 22
Q ss_pred --------HhCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 005877 155 --------AEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEI 189 (672)
Q Consensus 155 --------~~~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~ 189 (672)
.++++.++.+.||..+...|+++.|++.+-.+++.
T Consensus 223 ~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 223 QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 23567777777777777777777777776666554
No 263
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.70 E-value=4.5 Score=37.96 Aligned_cols=71 Identities=24% Similarity=0.402 Sum_probs=43.5
Q ss_pred ChHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHcCCCC
Q 005877 225 EDDEAFQILEYQAQK---GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK------GEPQSMEFLGEIYARGAGV 295 (672)
Q Consensus 225 ~~~~Ai~~~~~aa~~---~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~ 295 (672)
..++|...|.++... .+++.++.||..|... |.++|+..|-++++. -++..+..|+.+|..
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~kr------D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~---- 190 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYTKR------DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK---- 190 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHcc------CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH----
Confidence 445566666555433 3667777777766543 677777777776653 246666666666666
Q ss_pred cCCHHHHHHH
Q 005877 296 ERNYTKALEW 305 (672)
Q Consensus 296 ~~~~~~A~~~ 305 (672)
.+++++|--|
T Consensus 191 ~~~~e~AYiw 200 (203)
T PF11207_consen 191 LKNYEQAYIW 200 (203)
T ss_pred hcchhhhhhh
Confidence 6666666443
No 264
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.54 E-value=57 Score=37.07 Aligned_cols=131 Identities=15% Similarity=0.123 Sum_probs=81.0
Q ss_pred cCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhCC----C----hHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh
Q 005877 85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEG----D----PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE 156 (672)
Q Consensus 85 ~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~~----~----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 156 (672)
+...+.+|..++.. ..|++.|..+++++.... . -.+.+.|+.+|.. . +...|.....++++
T Consensus 59 a~~~l~la~iL~~e------T~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~----~-~~~~a~~~l~~~I~ 127 (608)
T PF10345_consen 59 ARVRLRLASILLEE------TENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFK----T-NPKAALKNLDKAIE 127 (608)
T ss_pred HHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh----c-CHHHHHHHHHHHHH
Confidence 44566777777754 578999999999964331 1 3466788888875 3 44449999999886
Q ss_pred C--C--C--HHHHHHHH--HHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHH
Q 005877 157 G--G--N--IQSKMAVA--YTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDE 228 (672)
Q Consensus 157 ~--~--~--~~a~~~Lg--~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~ 228 (672)
. + + ....+.+- ..+...+|+..|+..++.+....... ..+... + -.....+.+....+..++
T Consensus 128 ~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~-----~d~~~~---v--~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 128 DSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR-----GDPAVF---V--LASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc-----CCHHHH---H--HHHHHHHHHHhcCCCchh
Confidence 2 2 2 22333332 22323479999999999988754210 111110 0 011124556677788888
Q ss_pred HHHHHHHH
Q 005877 229 AFQILEYQ 236 (672)
Q Consensus 229 Ai~~~~~a 236 (672)
+++.++.+
T Consensus 198 ~~~~l~~~ 205 (608)
T PF10345_consen 198 VLELLQRA 205 (608)
T ss_pred HHHHHHHH
Confidence 88888876
No 265
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.42 E-value=44 Score=35.68 Aligned_cols=370 Identities=17% Similarity=0.110 Sum_probs=213.3
Q ss_pred chHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhC----CC-----hHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh-
Q 005877 87 GSYYITISKMMSAVTNGDVRVMEEATSEVESAAME----GD-----PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE- 156 (672)
Q Consensus 87 a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~----~~-----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~- 156 (672)
....+|...+.. .+|++.|...++++-.. ++ -.+...|+.+|.. ..+....|....++|++
T Consensus 48 t~LqLg~lL~~y------T~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~---~~~s~~~~KalLrkaiel 118 (629)
T KOG2300|consen 48 THLQLGALLLRY------TKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQ---LAQSFPPAKALLRKAIEL 118 (629)
T ss_pred HHHHHHHHHHHH------hccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHH---hcCCCchHHHHHHHHHHH
Confidence 345566665544 58899999999996432 22 3567788998876 13377788888999987
Q ss_pred -CCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHH
Q 005877 157 -GGNI----QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQ 231 (672)
Q Consensus 157 -~~~~----~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~ 231 (672)
.+.| .-.+.|+.++...+|+..|++.+.- +.. ..++.-...+++... ...+.+.....+..+...
T Consensus 119 sq~~p~wsckllfQLaql~~idkD~~sA~elLav----ga~----sAd~~~~~ylr~~ft--ls~~~ll~me~d~~dV~~ 188 (629)
T KOG2300|consen 119 SQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAV----GAE----SADHICFPYLRMLFT--LSMLMLLIMERDDYDVEK 188 (629)
T ss_pred hcCCchhhHHHHHHHHHHHhhhccchhHHHHHhc----ccc----ccchhhhHHHHHHHH--HHHHHHHHhCccHHHHHH
Confidence 4554 5678899999999999999887321 110 001111111111100 012222223334444444
Q ss_pred HHHH---HHHc--CCH-------HHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCC---------------HHHHH-
Q 005877 232 ILEY---QAQK--GNA-------GAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE---------------PQSME- 283 (672)
Q Consensus 232 ~~~~---aa~~--~~~-------~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~---------------~~a~~- 283 (672)
.+.. ..+. +|+ .-++.+-..|+.. .|..+-...+++-+++.+..+. +.-..
T Consensus 189 ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~-~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~w 267 (629)
T KOG2300|consen 189 LLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLL-PGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEW 267 (629)
T ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhc-ccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhh
Confidence 3333 3322 222 2344455555544 3444555566666666654211 10000
Q ss_pred -----HHHHHHHcCC---CCcCCHHHHHHHHHHHHHc-------C-CHHHHH--------HHHHHHHcCCCCCcCCHHHH
Q 005877 284 -----FLGEIYARGA---GVERNYTKALEWLTHAARQ-------Q-LYSAYN--------GIGYLYVKGYGVEKKNYTKA 339 (672)
Q Consensus 284 -----~Lg~~y~~g~---g~~~~~~~A~~~~~~a~~~-------~-~~~a~~--------~Lg~~y~~g~g~~~~~~~~A 339 (672)
.-+.+|..-. -+.|-+++|.++-.+++.+ + ...... .+..+-. ..+++.+|
T Consensus 268 lpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~l-----v~~~~~~a 342 (629)
T KOG2300|consen 268 LPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRL-----VRGDYVEA 342 (629)
T ss_pred ccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHH-----HhCCHHHH
Confidence 0111221110 1356778888887777743 1 222222 2222222 24688888
Q ss_pred HHHHHHHHhC------------CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHcCC
Q 005877 340 KEYFEKAADN------------EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGH-----QKAFYQLAKMFHTGV 402 (672)
Q Consensus 340 ~~~~~~a~~~------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~-----~~a~~~L~~~y~~g~ 402 (672)
++-...+.+- ..+..++-+|..... -+-++.|...|..|.+.-+ ..+..++|..|..
T Consensus 343 l~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~s----v~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~-- 416 (629)
T KOG2300|consen 343 LEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHS----VNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLR-- 416 (629)
T ss_pred HHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhh----cchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHH--
Confidence 8766655431 345667778876666 7789999999999987543 3455688888986
Q ss_pred CccCCHHHHHHHHHHHHHcCCh------------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005877 403 GLKKNLHMATALYKLVAERGPW------------SSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYG 470 (672)
Q Consensus 403 g~~~~~~~A~~~~~~a~~~~~~------------~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~ 470 (672)
.++ +..+|+-.-..+++ ..++-.|...+.++++.+|...+.+.+++.+.+..+.+-
T Consensus 417 --~~~---~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~------- 484 (629)
T KOG2300|consen 417 --IGD---AEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLT------- 484 (629)
T ss_pred --hcc---HHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHH-------
Confidence 333 33444433333332 235556777778889999999888888877665554432
Q ss_pred CCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 005877 471 EGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS 536 (672)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~ 536 (672)
+-.+.-||.+.. +.+|-.++.+..+-++.
T Consensus 485 ---------------------------------a~~LvLLs~v~l----slgn~~es~nmvrpamq 513 (629)
T KOG2300|consen 485 ---------------------------------ACSLVLLSHVFL----SLGNTVESRNMVRPAMQ 513 (629)
T ss_pred ---------------------------------HHHHHHHHHHHH----HhcchHHHHhccchHHH
Confidence 224467888888 78888888887776654
No 266
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=87.34 E-value=0.53 Score=28.60 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 005877 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEI 189 (672)
Q Consensus 161 ~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~ 189 (672)
.+++.+|.++...+++++|+.+|+++++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 45677888888888888888888887664
No 267
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=86.56 E-value=38 Score=34.06 Aligned_cols=133 Identities=14% Similarity=0.005 Sum_probs=68.8
Q ss_pred cCCHHHHHHHHHHHHh---CCCHH-------HHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcc
Q 005877 141 ERNKGKAFLYHHFAAE---GGNIQ-------SKMAVAYTYLRQD-MHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIH 209 (672)
Q Consensus 141 ~~d~~~A~~~~~~A~~---~~~~~-------a~~~Lg~~y~~~~-~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~ 209 (672)
++|.+.|..++.|+-. ..++. -+++.|.-....+ +++.|+.|++++.+.-.........++....+
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el--- 82 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL--- 82 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH---
Confidence 4566666666666543 22332 3344555555667 89999999999877532100000000000000
Q ss_pred cCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-CCHHHHHHHHHH
Q 005877 210 NGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-GEPQSMEFLGEI 288 (672)
Q Consensus 210 ~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~ 288 (672)
....+..|+..|+.. +.+...++|....+.+-.. ++....+.|..-
T Consensus 83 -------------------------------r~~iL~~La~~~l~~--~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~ 129 (278)
T PF08631_consen 83 -------------------------------RLSILRLLANAYLEW--DTYESVEKALNALRLLESEYGNKPEVFLLKLE 129 (278)
T ss_pred -------------------------------HHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 234566677777766 3334566666666665332 443344434333
Q ss_pred HHcCCCCcCCHHHHHHHHHHHHHc
Q 005877 289 YARGAGVERNYTKALEWLTHAARQ 312 (672)
Q Consensus 289 y~~g~g~~~~~~~A~~~~~~a~~~ 312 (672)
...+ ..+.+.+.+.+.+.+..
T Consensus 130 il~~---~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 130 ILLK---SFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHhc---cCChhHHHHHHHHHHHh
Confidence 3332 45666666666666543
No 268
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=85.68 E-value=2.9 Score=40.02 Aligned_cols=82 Identities=9% Similarity=-0.073 Sum_probs=71.7
Q ss_pred hhhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHH
Q 005877 105 VRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAV 180 (672)
Q Consensus 105 ~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~ 180 (672)
++.|..|+..|.+++ .|..+..+.+-+.+|.. .++.+....-.++|.+ ++.+.+++.||...+....++.||
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk----~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLK----LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH----hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHH
Confidence 678899999999954 45667888899999998 8899999999999987 466899999999999999999999
Q ss_pred HHHHHHHHHH
Q 005877 181 KLYAELAEIA 190 (672)
Q Consensus 181 ~~y~~a~~~~ 190 (672)
..++++.+..
T Consensus 99 ~~Lqra~sl~ 108 (284)
T KOG4642|consen 99 KVLQRAYSLL 108 (284)
T ss_pred HHHHHHHHHH
Confidence 9999997754
No 269
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.52 E-value=48 Score=34.30 Aligned_cols=62 Identities=11% Similarity=0.024 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH
Q 005877 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG------EPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR 311 (672)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 311 (672)
....+..++.+.... +.++.|...+.++...+ .+...+.-+.+... .++..+|+..++..++
T Consensus 145 ~~~~~l~~a~~aRk~-----g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~----~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKA-----GNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWA----QGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHC-----CCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHH----cCCHHHHHHHHHHHHH
Confidence 445555556655555 36666666666665543 45555656666655 6666666666666554
No 270
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=85.05 E-value=16 Score=39.34 Aligned_cols=84 Identities=13% Similarity=0.176 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHH
Q 005877 157 GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQ 236 (672)
Q Consensus 157 ~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~a 236 (672)
.+++.-+-.||...+.+|+.+-|.++|+++-+. ..+..+|...|+.++-.+..+.+
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~------------------------~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNIELAEECYQKAKDF------------------------SGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H------------------------HHHHHHHHHCT-HHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc------------------------cccHHHHHHhCCHHHHHHHHHHH
Confidence 467778888999999999999999999886442 23667788888877777777777
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHH
Q 005877 237 AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSK 272 (672)
Q Consensus 237 a~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~ 272 (672)
...|+....+.-+.+. +|.++-++.+.+
T Consensus 400 ~~~~~~n~af~~~~~l--------gd~~~cv~lL~~ 427 (443)
T PF04053_consen 400 EERGDINIAFQAALLL--------GDVEECVDLLIE 427 (443)
T ss_dssp HHTT-HHHHHHHHHHH--------T-HHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHc--------CCHHHHHHHHHH
Confidence 7777776666555443 477777777765
No 271
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=84.49 E-value=6.7 Score=34.10 Aligned_cols=71 Identities=15% Similarity=0.218 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877 503 NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ----SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK 578 (672)
Q Consensus 503 ~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 578 (672)
.....++++|++..-. ...|..+.+.+++..++. ..-+.+|.|+.-|.. .|+|+++++|.+..++..|++.
T Consensus 31 s~~s~f~lAwaLV~S~-~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yR----lkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSR-DTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYR----LKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred hHHHHHHHHHHHHccc-chHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHH----HhhHHHHHHHHHHHHhhCCCcH
Confidence 4677899999998322 356788999999998863 345778999998887 8999999999999999998864
No 272
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=84.46 E-value=2 Score=30.84 Aligned_cols=34 Identities=26% Similarity=0.490 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877 541 QAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK 578 (672)
Q Consensus 541 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 578 (672)
+.+|.|+..+.+ .||+.+|+++.+.++++.|+..
T Consensus 2 d~lY~lAig~yk----l~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 2 DCLYYLAIGHYK----LGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHHH----TT-HHHHHHHHHHHHHHTTS-H
T ss_pred hhHHHHHHHHHH----hhhHHHHHHHHHHHHhhCCCcH
Confidence 457888888887 8999999999999999999965
No 273
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.43 E-value=10 Score=35.16 Aligned_cols=93 Identities=14% Similarity=0.088 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHH---c-
Q 005877 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG-----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAE---R- 421 (672)
Q Consensus 351 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~---~- 421 (672)
.-.++..+|..|.+ .||.++|++.|.++.+.. ..+...++-.+... .+|+.....+..++-. .
T Consensus 35 ir~~~~~l~~~~~~----~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~----~~d~~~v~~~i~ka~~~~~~~ 106 (177)
T PF10602_consen 35 IRMALEDLADHYCK----IGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF----FGDWSHVEKYIEKAESLIEKG 106 (177)
T ss_pred HHHHHHHHHHHHHH----hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHhcc
Confidence 34667788888888 888888888888876632 12344444444444 5778777777777633 2
Q ss_pred CChhHHH----HHHHHHHhcCCHHHHHHHHHHHH
Q 005877 422 GPWSSLS----RWALESYLKGDVGKAFLLYSRMA 451 (672)
Q Consensus 422 ~~~~a~~----~lg~~~~~~g~~~~A~~~~~~a~ 451 (672)
++|.... .-|..+...++|.+|...|-.+.
T Consensus 107 ~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 107 GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 3455433 34566677889999988887763
No 274
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=84.32 E-value=2.2 Score=40.57 Aligned_cols=55 Identities=33% Similarity=0.413 Sum_probs=48.8
Q ss_pred CCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877 520 TQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK 578 (672)
Q Consensus 520 ~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 578 (672)
..+|.+-|.+.|.+|++. .....++.+|.+.++ .++++.|.+-|++.++++|+..
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ek----ag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEK----AGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhh----cccHHHHHHHHHHHHcCCcccc
Confidence 578999999999999886 678889999999887 8999999999999999998865
No 275
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=82.86 E-value=17 Score=36.20 Aligned_cols=55 Identities=24% Similarity=0.404 Sum_probs=49.1
Q ss_pred CCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877 520 TQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK 578 (672)
Q Consensus 520 ~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 578 (672)
..|+.++|...|+-|+. +.+++++...|...++ .+|.-+|-++|-+|+..+|...
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~----~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREM----HNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh----hhhhHhhhhhhheeeeeCCCch
Confidence 56899999999999976 4899999999999887 6899999999999999988754
No 276
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.57 E-value=78 Score=34.39 Aligned_cols=228 Identities=14% Similarity=0.039 Sum_probs=128.9
Q ss_pred CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCH
Q 005877 313 QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE----EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQ 388 (672)
Q Consensus 313 ~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~ 388 (672)
|-....+.-+.+-. .|+.+.|+..++.+++.. ..-..+.+|.++.. ..++..|...+....+..++
T Consensus 266 ga~wll~~ar~l~~------~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~----~~~~~~aad~~~~L~desdW 335 (546)
T KOG3783|consen 266 GALWLLMEARILSI------KGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVG----QHQYSRAADSFDLLRDESDW 335 (546)
T ss_pred CccHHHHHHHHHHH------cccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHhhhhh
Confidence 44444554444444 346888999999888721 23455677777776 78999999999887765433
Q ss_pred ---HHHHHHHHHHHcCC----CccCCHHHHHHHHHHHHHc-------CChhHHHHHHHHHHhcCCHHHHHHHHHHHH-Hc
Q 005877 389 ---KAFYQLAKMFHTGV----GLKKNLHMATALYKLVAER-------GPWSSLSRWALESYLKGDVGKAFLLYSRMA-EL 453 (672)
Q Consensus 389 ---~a~~~L~~~y~~g~----g~~~~~~~A~~~~~~a~~~-------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~-~~ 453 (672)
.-.|..|-++...+ +..++-++|..+.+..-+. .|.+.+. ..|+..+-.+.- ..
T Consensus 336 S~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~-----------~RKverf~~~~~~~~ 404 (546)
T KOG3783|consen 336 SHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFI-----------VRKVERFVKRGPLNA 404 (546)
T ss_pred hHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHH-----------HHHHHHHhccccccc
Confidence 33334445554332 2345666666666554322 1222211 112222221110 01
Q ss_pred CCHHH--HHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHH-HHHh-CCCHH-HHHHHHHHHHhCCCCCCCHHHHH
Q 005877 454 GYEVA--QSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWW-QASE-QGNEH-AALLIGDAYYYGRGTQRDYERAA 528 (672)
Q Consensus 454 g~~~a--~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~-~a~~-~~~~~-a~~~lG~~y~~g~g~~~d~~~A~ 528 (672)
....+ ...+++++.-+ +... .++..+...-++ ...+ +++.- -.+-+|.++. ..+|...|.
T Consensus 405 ~~~la~P~~El~Y~Wngf---------~~~s--~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR----~Lg~~~~a~ 469 (546)
T KOG3783|consen 405 SILLASPYYELAYFWNGF---------SRMS--KNELEKMRAELENPKIDDSDDEGLKYLLKGVILR----NLGDSEVAP 469 (546)
T ss_pred cccccchHHHHHHHHhhc---------ccCC--hhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHH----HcCCHHHHH
Confidence 11222 24555555321 1111 223333333333 2232 22211 2347899998 778999999
Q ss_pred HHHHHHHhc-----C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcc
Q 005877 529 EAYMHARSQ-----S----NAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKL 579 (672)
Q Consensus 529 ~~~~~A~~~-----~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~ 579 (672)
.+|+..++. . -|-|+|.||..|-.- .+-..++..|.++|-+-..+-.+
T Consensus 470 ~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~---~g~~~e~~~~L~kAr~~~~dY~l 526 (546)
T KOG3783|consen 470 KCFKIQVEKESKRTEDLWAVPFALYELALLYWDL---GGGLKEARALLLKAREYASDYEL 526 (546)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhc---ccChHHHHHHHHHHHhhccccch
Confidence 999998853 1 389999999998652 23599999999999998765443
No 277
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=82.53 E-value=7.7 Score=33.78 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC----HHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 005877 455 YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN----EHAALLIGDAYYYGRGTQRDYERAAEA 530 (672)
Q Consensus 455 ~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~a~~~lG~~y~~g~g~~~d~~~A~~~ 530 (672)
....++|+||.+-+ +.+..+.++.+.+++...+..+ -+-.|.|+.-++ ..++|+++++|
T Consensus 31 s~~s~f~lAwaLV~-------------S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~y----RlkeY~~s~~y 93 (149)
T KOG3364|consen 31 SKQSQFNLAWALVR-------------SRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHY----RLKEYSKSLRY 93 (149)
T ss_pred hHHHHHHHHHHHHc-------------ccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHH----HHhhHHHHHHH
Confidence 44668899999976 4447789999999997765333 445678888888 88999999999
Q ss_pred HHHHHhc--CCHHH
Q 005877 531 YMHARSQ--SNAQA 542 (672)
Q Consensus 531 ~~~A~~~--~~~~a 542 (672)
...-++. +|.++
T Consensus 94 vd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 94 VDALLETEPNNRQA 107 (149)
T ss_pred HHHHHhhCCCcHHH
Confidence 8887663 55555
No 278
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=81.30 E-value=6.4 Score=39.65 Aligned_cols=77 Identities=17% Similarity=0.056 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHHhCC------CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCccC
Q 005877 335 NYTKAKEYFEKAADNE------EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKK 406 (672)
Q Consensus 335 ~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~ 406 (672)
+|..|+..|.+.+... ++..+.|-+-+... .++|..+++-..+|.... +..++++-+.++.. .+
T Consensus 96 ryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~----l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e----Le 167 (390)
T KOG0551|consen 96 RYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY----LGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE----LE 167 (390)
T ss_pred hHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH----HH
Confidence 5555555555554431 22333444444444 455555555555554422 44455555555444 44
Q ss_pred CHHHHHHHHHHHH
Q 005877 407 NLHMATALYKLVA 419 (672)
Q Consensus 407 ~~~~A~~~~~~a~ 419 (672)
.++.|+.|++..+
T Consensus 168 ~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 168 RFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHhhhh
Confidence 4455555554443
No 279
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=81.17 E-value=1.1e+02 Score=35.30 Aligned_cols=114 Identities=18% Similarity=0.130 Sum_probs=74.3
Q ss_pred cCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHH
Q 005877 173 QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGL 250 (672)
Q Consensus 173 ~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~ 250 (672)
.+++.+|+.-..++++..|+.. -+..-.+.+..++|..++|..+++..... .|....-.+-.
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~----------------~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~ 85 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNAL----------------YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQN 85 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcH----------------HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHH
Confidence 4677777777777777544321 12224677788999999999888876544 36666666777
Q ss_pred HHHhcCCCcccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHH
Q 005877 251 FYYFGLRGLRRDRTKALMWFSKAADK-GEPQSMEFLGEIYARGAGVERNYTKALEWLT 307 (672)
Q Consensus 251 ~y~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 307 (672)
+|.+. +..++|...|++++.. +.-+-.+.+-..|.+-..-......|++.|+
T Consensus 86 ~y~d~-----~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK 138 (932)
T KOG2053|consen 86 VYRDL-----GKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK 138 (932)
T ss_pred HHHHH-----hhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766 4899999999999875 2355555555666651111222334566666
No 280
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.09 E-value=7.7 Score=26.61 Aligned_cols=32 Identities=25% Similarity=0.136 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHH
Q 005877 428 SRWALESYLKGDVGKAFLLYSRMAELGYEVAQ 459 (672)
Q Consensus 428 ~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~ 459 (672)
+.++..|...||.+.|...+++.++.|+...+
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~~~q~ 34 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGDEAQR 34 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCCHHHH
Confidence 46777788888888888888888877665544
No 281
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=79.93 E-value=1.1e+02 Score=34.37 Aligned_cols=58 Identities=10% Similarity=-0.038 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhc
Q 005877 108 MEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLR 172 (672)
Q Consensus 108 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~ 172 (672)
+++|.++. .+..+|.-+..|+..-.. .-+.+.|...|-+..+-.-+...-.|+.++.+
T Consensus 679 ledA~qfi---EdnPHprLWrllAe~Al~----Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~ 736 (1189)
T KOG2041|consen 679 LEDAIQFI---EDNPHPRLWRLLAEYALF----KLALDTAEHAFVRCGDYAGIKLVKRLRTIHSK 736 (1189)
T ss_pred hHHHHHHH---hcCCchHHHHHHHHHHHH----HHhhhhHhhhhhhhccccchhHHHHhhhhhhH
Confidence 34444443 345678888899987776 56777888777776664334444455555543
No 282
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.77 E-value=2.2 Score=25.37 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHH
Q 005877 161 QSKMAVAYTYLRQDMHDKAVKLYA 184 (672)
Q Consensus 161 ~a~~~Lg~~y~~~~~~~~A~~~y~ 184 (672)
.+.+.||..+...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355667777777777777766654
No 283
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=79.54 E-value=3.3 Score=44.63 Aligned_cols=100 Identities=23% Similarity=0.160 Sum_probs=72.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhC--CCH
Q 005877 430 WALESYLKGDVGKAFLLYSRMAELG---YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ--GNE 504 (672)
Q Consensus 430 lg~~~~~~g~~~~A~~~~~~a~~~g---~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~ 504 (672)
-|..+-..|+...|+.++..|+... ......+||.++.+ .+....|-.++.++... ..+
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~----------------~~~~~da~~~l~q~l~~~~sep 676 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIH----------------YGLHLDATKLLLQALAINSSEP 676 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHH----------------hhhhccHHHHHHHHHhhcccCc
Confidence 3444456789999999999996543 33456788888877 33455677777765444 346
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHH
Q 005877 505 HAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYM 549 (672)
Q Consensus 505 ~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~ 549 (672)
...+.+|.+|. ..+|.++|++.++.|++. +++.....|-.+
T Consensus 677 l~~~~~g~~~l----~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 677 LTFLSLGNAYL----ALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred hHHHhcchhHH----HHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 67789999999 889999999999999875 666665555433
No 284
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=79.17 E-value=7.4 Score=42.11 Aligned_cols=118 Identities=18% Similarity=0.129 Sum_probs=78.1
Q ss_pred HHHHHHHHcCCH--HHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCcCCHHHHHHH
Q 005877 231 QILEYQAQKGNA--GAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG---EPQSMEFLGEIYARGAGVERNYTKALEW 305 (672)
Q Consensus 231 ~~~~~aa~~~~~--~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 305 (672)
..+..+++..+. -..++++.+|... .++...|+.++..|.... ......+|+.+... .+-.-.|-.+
T Consensus 593 ~~~~~~~~~~~~p~w~~ln~aglywr~----~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~----~~~~~da~~~ 664 (886)
T KOG4507|consen 593 SFLFHAINKPNAPIWLILNEAGLYWRA----VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIH----YGLHLDATKL 664 (886)
T ss_pred HHHHHHhcCCCCCeEEEeecccceeee----cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHH----hhhhccHHHH
Confidence 334444555333 3445666777544 368889999999887642 23455677777665 4455567778
Q ss_pred HHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHH
Q 005877 306 LTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVM 361 (672)
Q Consensus 306 ~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~ 361 (672)
+.+++... .+...+.+|.+|+. ..|.++|++.|++|++.+ ++.....|-.+
T Consensus 665 l~q~l~~~~sepl~~~~~g~~~l~-----l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 665 LLQALAINSSEPLTFLSLGNAYLA-----LKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHhhcccCchHHHhcchhHHH-----HhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 88877654 56667788888886 348999999999998864 66666555433
No 285
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.99 E-value=23 Score=34.32 Aligned_cols=112 Identities=13% Similarity=-0.009 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhh-ccCCCCcccch-hcccCchhhhhHhhhccCChHHHHHHHHHHH
Q 005877 160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFL-ISKDSPVIEPI-RIHNGAEENKGALRKSRGEDDEAFQILEYQA 237 (672)
Q Consensus 160 ~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~-~~~~~~~~~~~-~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa 237 (672)
+..+-.-|..+...|+|.+|...|..++..-.+-.. ..|..|.+..+ +.......|....+...|++-++++.-....
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 356677788899999999999999998764332211 11111211111 1111222234444445555555555544443
Q ss_pred Hc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc
Q 005877 238 QK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK 276 (672)
Q Consensus 238 ~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~ 276 (672)
.. ++..|++.-|.....-- +..+|..-|.++++.
T Consensus 258 ~~~~~nvKA~frRakAhaa~W-----n~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVW-----NEAEAKADLQKVLEL 293 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhc-----CHHHHHHHHHHHHhc
Confidence 32 45555555555544331 455555555555443
No 286
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=78.66 E-value=9.2 Score=38.58 Aligned_cols=87 Identities=15% Similarity=0.096 Sum_probs=51.6
Q ss_pred HHHHHHcCCCCcCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--CHHHHH
Q 005877 285 LGEIYARGAGVERNYTKALEWLTHAARQQ------LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHY 356 (672)
Q Consensus 285 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~~~a~~ 356 (672)
=|.-|.. .++|..|+..|.++++.. ++..+.+=+.+.+. .+||..|+.=..++...+ +..+++
T Consensus 87 eGN~~fK----~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~-----l~NyRs~l~Dcs~al~~~P~h~Ka~~ 157 (390)
T KOG0551|consen 87 EGNEYFK----EKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY-----LGNYRSALNDCSAALKLKPTHLKAYI 157 (390)
T ss_pred HhHHHHH----hhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH-----HHHHHHHHHHHHHHHhcCcchhhhhh
Confidence 3556666 667777777777776542 22233333333332 246666666666666543 666667
Q ss_pred HHHHHHHcCCCchhcHHHHHHHHHHHHH
Q 005877 357 NLGVMYYKGIGVKRDVKLACKYFLVAAN 384 (672)
Q Consensus 357 ~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 384 (672)
.-+.|+.. ...+.+|+.|.+...+
T Consensus 158 R~Akc~~e----Le~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 158 RGAKCLLE----LERFAEAVNWCEEGLQ 181 (390)
T ss_pred hhhHHHHH----HHHHHHHHHHHhhhhh
Confidence 76777766 6667777777666543
No 287
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.42 E-value=77 Score=31.76 Aligned_cols=113 Identities=19% Similarity=0.138 Sum_probs=68.1
Q ss_pred cCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHH-HHcCCHHHHHHHH--HHHHHhCCCCcccCCC
Q 005877 405 KKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRM-AELGYEVAQSNAA--WILDKYGEGSMCMGES 479 (672)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a-~~~g~~~a~~nla--~~l~~~~~~~~~~~~~ 479 (672)
.+++..|...++.+....+ ..+...++.++...|+.+.|...+... .+.....++--.+ -++.+
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q----------- 215 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ----------- 215 (304)
T ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH-----------
Confidence 5777777777777776653 446666777777777777777777653 2211111111001 01111
Q ss_pred CCCCchHhHHHHHHHHH-HHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 005877 480 GFCTDAERHQCAHSLWW-QASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ 537 (672)
Q Consensus 480 ~~~~~~~~~~~A~~~~~-~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~ 537 (672)
.....+...+-+ -+.+++|.++.+.|+..|. ..++.+.|.+.+-.-++.
T Consensus 216 -----aa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~----~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 216 -----AAATPEIQDLQRRLAADPDDVEAALALADQLH----LVGRNEAALEHLLALLRR 265 (304)
T ss_pred -----HhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHh
Confidence 011111112222 2567889999999999999 899999999888776654
No 288
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=76.83 E-value=26 Score=32.52 Aligned_cols=91 Identities=19% Similarity=0.201 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-C----HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC----
Q 005877 279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-L----YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN---- 349 (672)
Q Consensus 279 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~----~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~---- 349 (672)
..++..+|..|.. .||.+.|++.|.++.+.. . ......+-.+... .+|+.....+..++-..
T Consensus 36 r~~~~~l~~~~~~----~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~-----~~d~~~v~~~i~ka~~~~~~~ 106 (177)
T PF10602_consen 36 RMALEDLADHYCK----IGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF-----FGDWSHVEKYIEKAESLIEKG 106 (177)
T ss_pred HHHHHHHHHHHHH----hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHHhcc
Confidence 4677888888888 888888988888877653 1 1122222222221 34788888887777432
Q ss_pred CCHHHHH----HHHHHHHcCCCchhcHHHHHHHHHHH
Q 005877 350 EEAGGHY----NLGVMYYKGIGVKRDVKLACKYFLVA 382 (672)
Q Consensus 350 ~~~~a~~----~Lg~~y~~g~g~~~~~~~A~~~~~~A 382 (672)
++.+... .-|..++. .++|.+|.+.|..+
T Consensus 107 ~d~~~~nrlk~~~gL~~l~----~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 107 GDWERRNRLKVYEGLANLA----QRDFKEAAELFLDS 139 (177)
T ss_pred chHHHHHHHHHHHHHHHHH----hchHHHHHHHHHcc
Confidence 2333222 22333444 56676666666655
No 289
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=76.17 E-value=10 Score=30.93 Aligned_cols=66 Identities=21% Similarity=0.216 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHHh----cC-------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHH
Q 005877 520 TQRDYERAAEAYMHARS----QS-------NAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPVTLALTSL 588 (672)
Q Consensus 520 ~~~d~~~A~~~~~~A~~----~~-------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~~~~~~~ 588 (672)
..+||..|++.+.+..+ .. ...++.+++.++.. .|+.++|+..++.|+.+-.+..=...+..+..
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~----~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~ 85 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR----FGHYEEALQALEEAIRLARENGDRRCLAYALS 85 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 35788888777777543 11 14677888888876 78899999999999887544433334444444
Q ss_pred H
Q 005877 589 W 589 (672)
Q Consensus 589 ~ 589 (672)
|
T Consensus 86 ~ 86 (94)
T PF12862_consen 86 W 86 (94)
T ss_pred H
Confidence 4
No 290
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=75.70 E-value=1.4e+02 Score=33.49 Aligned_cols=46 Identities=13% Similarity=0.061 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHHH----HHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHH
Q 005877 105 VRVMEEATSEVES----AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFA 154 (672)
Q Consensus 105 ~~~~~~A~~~~~~----a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 154 (672)
.+|+-.-.++++. ..+.+--+|...+|.-+.. ....+.|.+||.+.
T Consensus 773 lgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~----~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 773 LGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAE----MMEWEEAAKYYSYC 822 (1189)
T ss_pred hhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhc
Confidence 4666666666665 2233446677788877776 66777888887765
No 291
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.55 E-value=99 Score=31.54 Aligned_cols=120 Identities=15% Similarity=0.068 Sum_probs=53.1
Q ss_pred hHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcC
Q 005877 217 GALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARG 292 (672)
Q Consensus 217 ~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g 292 (672)
..+...+|+.-+|-..+++..+. .|.-+.----..++.. ++...-...+++.+.+ .+...+..+--||..|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~-----G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg 184 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYN-----GNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG 184 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhc-----cchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh
Confidence 33444556666666666665443 2322222222333333 1444444455555543 1111222222233322
Q ss_pred CCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Q 005877 293 AGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKA 346 (672)
Q Consensus 293 ~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a 346 (672)
.--.+-|.+|.+.-+++++.+ +..+...++.+... .+.+.++.++..+.
T Consensus 185 L~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem-----~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEM-----NGRHKEGKEFMYKT 235 (491)
T ss_pred HHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHh-----cchhhhHHHHHHhc
Confidence 222455666666666665544 34444444444443 34555555555443
No 292
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=75.42 E-value=4.7 Score=28.93 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Q 005877 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVN 192 (672)
Q Consensus 161 ~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~ 192 (672)
+.++.||..+.+.|+|++|..+.+.+++..|.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 45788899999999999999999999987664
No 293
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=75.23 E-value=4.5 Score=23.98 Aligned_cols=24 Identities=21% Similarity=0.066 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHH
Q 005877 425 SSLSRWALESYLKGDVGKAFLLYS 448 (672)
Q Consensus 425 ~a~~~lg~~~~~~g~~~~A~~~~~ 448 (672)
.+...+|..+...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345667777777888888777664
No 294
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=70.79 E-value=36 Score=27.50 Aligned_cols=64 Identities=16% Similarity=-0.022 Sum_probs=43.5
Q ss_pred HHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 005877 118 AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG----GNIQSKMAVAYTYLRQDMHDKAVKLYAE 185 (672)
Q Consensus 118 a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~~~~a~~~Lg~~y~~~~~~~~A~~~y~~ 185 (672)
+.+|++.++.+.++..+.. .++++.|++.+-..+.. ++..+.-.|-.++...|.-+.-..-|++
T Consensus 16 a~~P~D~~ar~~lA~~~~~----~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 16 AANPDDLDARYALADALLA----AGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHSTT-HHHHHHHHHHHHH----TT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 5677889999999999888 88999999988888874 3456666666666665554444444444
No 295
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=69.99 E-value=7.7 Score=30.11 Aligned_cols=34 Identities=29% Similarity=0.375 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 407 NLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 407 ~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
+.++|+.+.++|++.+ ..|++++|+.+|..|++.
T Consensus 2 ~l~kai~Lv~~A~~eD-------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 2 DLERAHFLVTQAFDED-------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred CHHHHHHHHHHHHHhh-------------HhhhHHHHHHHHHHHHHH
Confidence 4566777777776543 367888888888888664
No 296
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=69.54 E-value=1.4e+02 Score=30.73 Aligned_cols=63 Identities=11% Similarity=0.073 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Q 005877 277 GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ------LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAAD 348 (672)
Q Consensus 277 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~ 348 (672)
.....+..++.+.+. .|.++.|...+.++...+ .+.....-+.+... +|+..+|+..++..++
T Consensus 144 ~~~~~~l~~a~~aRk----~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~-----~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARK----AGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWA-----QGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHH----CCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHH-----cCCHHHHHHHHHHHHH
Confidence 345667777888887 888888888888887754 45555555555543 5688888888887776
No 297
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=69.51 E-value=10 Score=24.66 Aligned_cols=28 Identities=18% Similarity=0.413 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHH--HHHH
Q 005877 161 QSKMAVAYTYLRQDMHDKAVKLYA--ELAE 188 (672)
Q Consensus 161 ~a~~~Lg~~y~~~~~~~~A~~~y~--~a~~ 188 (672)
+..+.+|..+...|++++|+++|+ -+..
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ 31 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCA 31 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 567788888888888888888844 5543
No 298
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=69.38 E-value=1.5e+02 Score=30.99 Aligned_cols=149 Identities=14% Similarity=0.086 Sum_probs=98.4
Q ss_pred cCCHHHHHHHHHHHHHcCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCC
Q 005877 405 KKNLHMATALYKLVAERGPW--SSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFC 482 (672)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~ 482 (672)
.-|...|...-.++.+..+. .+-.--+..++..|+..|+-..++.+=+...- ..++.+|..... -.
T Consensus 242 dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH---P~ia~lY~~ar~---------gd 309 (531)
T COG3898 242 DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH---PDIALLYVRARS---------GD 309 (531)
T ss_pred cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC---hHHHHHHHHhcC---------CC
Confidence 45677777777777777643 34455567788899999999998888554321 122333333111 11
Q ss_pred CchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHcCCCCCCCHH
Q 005877 483 TDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSN-AQAMFNLGYMHEHGQGLPLDLH 561 (672)
Q Consensus 483 ~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~~-~~a~~~Lg~~y~~g~g~~~d~~ 561 (672)
....+.++|..+ .+.++++..+....+..-+ ..+++..|..--+.+....- ..+..-|+.+-+- -.||-.
T Consensus 310 ta~dRlkRa~~L--~slk~nnaes~~~va~aAl----da~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeA---etGDqg 380 (531)
T COG3898 310 TALDRLKRAKKL--ESLKPNNAESSLAVAEAAL----DAGEFSAARAKAEAAAREAPRESAYLLLADIEEA---ETGDQG 380 (531)
T ss_pred cHHHHHHHHHHH--HhcCccchHHHHHHHHHHH----hccchHHHHHHHHHHhhhCchhhHHHHHHHHHhh---ccCchH
Confidence 123344444333 3567889999999998888 66999999988888776543 3344455666543 258999
Q ss_pred HHHHHHHHHHhcC
Q 005877 562 LAKRYYDQALEVD 574 (672)
Q Consensus 562 ~A~~~~~~A~~~~ 574 (672)
+...|.-+++..-
T Consensus 381 ~vR~wlAqav~AP 393 (531)
T COG3898 381 KVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999864
No 299
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=69.12 E-value=1e+02 Score=34.83 Aligned_cols=133 Identities=17% Similarity=0.057 Sum_probs=73.5
Q ss_pred ccCCHHHHHHHHHHHHHcC-C--hhHHHHHHHHH---------HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Q 005877 404 LKKNLHMATALYKLVAERG-P--WSSLSRWALES---------YLKGDVGKAFLLYSRMAELG-YEVAQSNAAWILDKYG 470 (672)
Q Consensus 404 ~~~~~~~A~~~~~~a~~~~-~--~~a~~~lg~~~---------~~~g~~~~A~~~~~~a~~~g-~~~a~~nla~~l~~~~ 470 (672)
..||.++|+...-.+++.. + ++.+..-|.+| -..+..+.|+.||++|.+.. ...+-.|+|.++.--|
T Consensus 255 r~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhh
Confidence 4566666666655555543 1 22222222222 12334567888888887764 3444456666654311
Q ss_pred CCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005877 471 EGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMH 550 (672)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y 550 (672)
. +-.+..-+-.+|..+-.-.|.+|.+++-.+|+.-+.=.+ +.++
T Consensus 335 ~----------------------------~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~--------asVL 378 (1226)
T KOG4279|consen 335 E----------------------------HFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFE--------ASVL 378 (1226)
T ss_pred h----------------------------hccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhh--------hhhh
Confidence 1 112333334555555555568888877777665432111 1121
Q ss_pred HcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877 551 EHGQGLPLDLHLAKRYYDQALEVDPAAK 578 (672)
Q Consensus 551 ~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 578 (672)
..|+.+|++--++..+++|...
T Consensus 379 ------And~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 379 ------ANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred ------ccCHHHHHHHHHHHhccCCcee
Confidence 5689999999898888887653
No 300
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=69.00 E-value=23 Score=28.84 Aligned_cols=51 Identities=14% Similarity=0.023 Sum_probs=37.3
Q ss_pred cCCHHHHHHHHHHHHh----CC-------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 005877 141 ERNKGKAFLYHHFAAE----GG-------NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAV 191 (672)
Q Consensus 141 ~~d~~~A~~~~~~A~~----~~-------~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~ 191 (672)
.+|+..|++.+.+..+ .+ ...+.+++|.++...|++++|+..+++++++..
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4566666555555433 11 246778899999999999999999999988653
No 301
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=68.69 E-value=8.5 Score=29.88 Aligned_cols=34 Identities=29% Similarity=0.340 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 005877 262 DRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ 312 (672)
Q Consensus 262 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 312 (672)
+.++|+.+.++|++.+. .+++++|+.+|..+++.
T Consensus 2 ~l~kai~Lv~~A~~eD~-----------------~gny~eA~~lY~~ale~ 35 (75)
T cd02680 2 DLERAHFLVTQAFDEDE-----------------KGNAEEAIELYTEAVEL 35 (75)
T ss_pred CHHHHHHHHHHHHHhhH-----------------hhhHHHHHHHHHHHHHH
Confidence 56778888888876652 57888888888888764
No 302
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=67.88 E-value=15 Score=23.96 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=12.7
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHH--HHHHHhcC
Q 005877 542 AMFNLGYMHEHGQGLPLDLHLAKRY--YDQALEVD 574 (672)
Q Consensus 542 a~~~Lg~~y~~g~g~~~d~~~A~~~--~~~A~~~~ 574 (672)
.++.+|..+.. .|++++|+.+ |+-+..++
T Consensus 3 ~~y~~a~~~y~----~~ky~~A~~~~~y~~l~~ld 33 (36)
T PF07720_consen 3 YLYGLAYNFYQ----KGKYDEAIHFFQYAFLCALD 33 (36)
T ss_dssp HHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH----HhhHHHHHHHHHHHHHHHhc
Confidence 34444444443 4555555555 33444443
No 303
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=67.62 E-value=1.7e+02 Score=30.78 Aligned_cols=65 Identities=20% Similarity=0.145 Sum_probs=50.7
Q ss_pred hhhHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 005877 105 VRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYA 184 (672)
Q Consensus 105 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~~~~~~~A~~~y~ 184 (672)
...|+++...|..+.+..++.....+=. ..+=|+++++.++.++..+||.+.|.+..+
T Consensus 7 s~~Y~~~q~~F~~~v~~~Dp~~l~~ll~----------------------~~PyHidtLlqls~v~~~~gd~~~A~~lle 64 (360)
T PF04910_consen 7 SKAYQEAQEQFYAAVQSHDPNALINLLQ----------------------KNPYHIDTLLQLSEVYRQQGDHAQANDLLE 64 (360)
T ss_pred CHHHHHHHHHHHHHHHccCHHHHHHHHH----------------------HCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4667888888888887777766654421 146789999999999999999999999999
Q ss_pred HHHHHHH
Q 005877 185 ELAEIAV 191 (672)
Q Consensus 185 ~a~~~~~ 191 (672)
+++=...
T Consensus 65 RALf~~e 71 (360)
T PF04910_consen 65 RALFAFE 71 (360)
T ss_pred HHHHHHH
Confidence 9876544
No 304
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.37 E-value=1.7e+02 Score=30.00 Aligned_cols=143 Identities=10% Similarity=0.014 Sum_probs=75.1
Q ss_pred cCCHHHHHHHHHHHHHcCChhH--HHHHHHHHHhcCCHHHHHHHHHHHHHc---CC---HHHHHHHHHHHHHhCCCCccc
Q 005877 405 KKNLHMATALYKLVAERGPWSS--LSRWALESYLKGDVGKAFLLYSRMAEL---GY---EVAQSNAAWILDKYGEGSMCM 476 (672)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~~~~a--~~~lg~~~~~~g~~~~A~~~~~~a~~~---g~---~~a~~nla~~l~~~~~~~~~~ 476 (672)
.|+..+|....++.++.-|.+- ...--.+++..|+.+.....+++.+.. +. ...+-.+++.+..
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E-------- 187 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE-------- 187 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH--------
Confidence 4555666666666666555432 222233455566666666666666544 11 1222234444444
Q ss_pred CCCCCCCchHhHHHHHHHHHHHHhCCCHHHHH--HHHHHHHhCCCCCCCHHHHHHHHHHHHhc---CCH---HHHHHHHH
Q 005877 477 GESGFCTDAERHQCAHSLWWQASEQGNEHAAL--LIGDAYYYGRGTQRDYERAAEAYMHARSQ---SNA---QAMFNLGY 548 (672)
Q Consensus 477 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~--~lG~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~---~a~~~Lg~ 548 (672)
.+-+++|.+.-+++.+.+..+++- ..+.++. ..+.++++.+...+.-.. +.- --+.+-+.
T Consensus 188 --------~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVle----m~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al 255 (491)
T KOG2610|consen 188 --------CGIYDDAEKQADRALQINRFDCWASHAKAHVLE----MNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTAL 255 (491)
T ss_pred --------hccchhHHHHHHhhccCCCcchHHHHHHHHHHH----hcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHH
Confidence 344566666666666665555444 4555555 566777777766664332 111 12334444
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHH
Q 005877 549 MHEHGQGLPLDLHLAKRYYDQAL 571 (672)
Q Consensus 549 ~y~~g~g~~~d~~~A~~~~~~A~ 571 (672)
.|.. ...+++|++.|++=+
T Consensus 256 ~~iE----~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 256 FHIE----GAEYEKALEIYDREI 274 (491)
T ss_pred hhhc----ccchhHHHHHHHHHH
Confidence 5544 256777777776543
No 305
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=65.34 E-value=2.1e+02 Score=31.05 Aligned_cols=96 Identities=18% Similarity=0.161 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHH
Q 005877 350 EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSR 429 (672)
Q Consensus 350 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~ 429 (672)
.+++..+.|+.- .|+++.|.+.- -+..++.-|..||..... +++++-|..+|+++-+ +..
T Consensus 319 ~D~~~rFeLAl~-------lg~L~~A~~~a---~~~~~~~~W~~Lg~~AL~----~g~~~lAe~c~~k~~d------~~~ 378 (443)
T PF04053_consen 319 TDPDHRFELALQ-------LGNLDIALEIA---KELDDPEKWKQLGDEALR----QGNIELAEECYQKAKD------FSG 378 (443)
T ss_dssp S-HHHHHHHHHH-------CT-HHHHHHHC---CCCSTHHHHHHHHHHHHH----TTBHHHHHHHHHHCT-------HHH
T ss_pred CChHHHhHHHHh-------cCCHHHHHHHH---HhcCcHHHHHHHHHHHHH----cCCHHHHHHHHHhhcC------ccc
Confidence 456666666532 45666665432 235577889999999887 8999999999987643 445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005877 430 WALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWI 465 (672)
Q Consensus 430 lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~ 465 (672)
|...|...|+.++=.+.-..|...|.....+.-+++
T Consensus 379 L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~ 414 (443)
T PF04053_consen 379 LLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALL 414 (443)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 666677788877766666677777766555554444
No 306
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=65.32 E-value=76 Score=27.15 Aligned_cols=28 Identities=14% Similarity=0.063 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 426 SLSRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 426 a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
+.++.+..+...|..++|+..|+++.++
T Consensus 102 aVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 102 AVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4667778888999999999999999764
No 307
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=64.76 E-value=2.5e+02 Score=31.87 Aligned_cols=280 Identities=14% Similarity=0.073 Sum_probs=151.6
Q ss_pred CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 005877 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE--------PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ 312 (672)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~--------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 312 (672)
++...+.||.+++.-- .|+++|..++.|++.... -.+.+.++.+|.. .+...|+...++.++.
T Consensus 58 ea~~~l~la~iL~~eT----~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~-----~~~~~a~~~l~~~I~~ 128 (608)
T PF10345_consen 58 EARVRLRLASILLEET----ENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFK-----TNPKAALKNLDKAIED 128 (608)
T ss_pred HHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHH
Confidence 5678899999998553 699999999999976421 3466778888886 4444499999998864
Q ss_pred C------CHHHHHHHHHH-HHcCCCCCcCCHHHHHHHHHHHHhC----CCHHHH----HHHHHHHHcCCCchhcHHHHHH
Q 005877 313 Q------LYSAYNGIGYL-YVKGYGVEKKNYTKAKEYFEKAADN----EEAGGH----YNLGVMYYKGIGVKRDVKLACK 377 (672)
Q Consensus 313 ~------~~~a~~~Lg~~-y~~g~g~~~~~~~~A~~~~~~a~~~----~~~~a~----~~Lg~~y~~g~g~~~~~~~A~~ 377 (672)
- ...-.+.+-.+ +.. ..+|+..|++.++..... +++... ..-+.++.. .+..+++++
T Consensus 129 ~~~~~~~~w~~~frll~~~l~~----~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~----~~~~~d~~~ 200 (608)
T PF10345_consen 129 SETYGHSAWYYAFRLLKIQLAL----QHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLR----RGSPDDVLE 200 (608)
T ss_pred HhccCchhHHHHHHHHHHHHHH----hcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc----CCCchhHHH
Confidence 2 11112222211 211 114899999999888654 444332 223445554 445555655
Q ss_pred HHHHHHH----c--C---C---HHHHHHHHHH-HHcCCCccCCHHHHHHHH---HHHHHcC---C---------------
Q 005877 378 YFLVAAN----A--G---H---QKAFYQLAKM-FHTGVGLKKNLHMATALY---KLVAERG---P--------------- 423 (672)
Q Consensus 378 ~~~~A~~----~--~---~---~~a~~~L~~~-y~~g~g~~~~~~~A~~~~---~~a~~~~---~--------------- 423 (672)
...++.. . + + -.++..+-.+ +.- ..++.+.+.... +..++.. +
T Consensus 201 ~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l---~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~ 277 (608)
T PF10345_consen 201 LLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSL---QQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNI 277 (608)
T ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeec
Confidence 5555522 1 0 1 1222222111 111 133433333333 3332211 1
Q ss_pred ----------hh-------------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCC
Q 005877 424 ----------WS-------------SLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESG 480 (672)
Q Consensus 424 ----------~~-------------a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~ 480 (672)
+. .++--|......+..++|.+++.+++++=...- .. ....
T Consensus 278 ~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~--------~~--------~~~~ 341 (608)
T PF10345_consen 278 GEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLK--------IK--------SPSA 341 (608)
T ss_pred ccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhh--------cc--------CCCC
Confidence 00 122234445566667799999998866411100 00 0000
Q ss_pred CCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHH
Q 005877 481 FCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ-----------SNAQAMFNLGYM 549 (672)
Q Consensus 481 ~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~-----------~~~~a~~~Lg~~ 549 (672)
..........-..+++. -.-...+..+++.. ..+++.+|....+...+. -.+...+-.|..
T Consensus 342 ~~~sl~~~~~~~~~~~~----l~~~~~~y~~~~~~----~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~ 413 (608)
T PF10345_consen 342 PSESLSEASERIQWLRY----LQCYLLFYQIWCNF----IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLY 413 (608)
T ss_pred CCcCHHHHHHhHHHHHH----HHHHHHHHHHHHHH----HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHH
Confidence 00001111111111110 01234568888888 889999999988876542 126667777766
Q ss_pred HHcCCCCCCCHHHHHHHHH
Q 005877 550 HEHGQGLPLDLHLAKRYYD 568 (672)
Q Consensus 550 y~~g~g~~~d~~~A~~~~~ 568 (672)
+.. .||.+.|+.+|.
T Consensus 414 ~q~----~g~l~~A~~~y~ 428 (608)
T PF10345_consen 414 YQS----TGDLEAALYQYQ 428 (608)
T ss_pred HHH----cCCHHHHHHHHh
Confidence 654 699999999998
No 308
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=64.74 E-value=8.6 Score=40.75 Aligned_cols=49 Identities=24% Similarity=0.243 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHHHcCChhH--HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877 406 KNLHMATALYKLVAERGPWSS--LSRWALESYLKGDVGKAFLLYSRMAELG 454 (672)
Q Consensus 406 ~~~~~A~~~~~~a~~~~~~~a--~~~lg~~~~~~g~~~~A~~~~~~a~~~g 454 (672)
++++.|+..|.++++..+-.+ +.+.+.++.+.+++..|+.-..+|++.+
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d 68 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD 68 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC
Confidence 445555555555555543221 2233444444555555555555554443
No 309
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=63.85 E-value=9.7 Score=26.10 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=23.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHH
Q 005877 163 KMAVAYTYLRQDMHDKAVKLYAELAE 188 (672)
Q Consensus 163 ~~~Lg~~y~~~~~~~~A~~~y~~a~~ 188 (672)
.+.||..|...|+.+.|.+..++++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 47899999999999999999999885
No 310
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=63.33 E-value=2.9e+02 Score=32.16 Aligned_cols=49 Identities=10% Similarity=0.015 Sum_probs=28.8
Q ss_pred cCCHHHHHHHHHHHHhC-------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 005877 141 ERNKGKAFLYHHFAAEG-------GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEI 189 (672)
Q Consensus 141 ~~d~~~A~~~~~~A~~~-------~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~ 189 (672)
.+|.++|+.+-+.+... ..+.+...+|.+..-.|++++|..+.+++.+.
T Consensus 471 ~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 471 RGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred cCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 55666666666666542 12345555666666666666666666665554
No 311
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=63.26 E-value=13 Score=24.53 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 005877 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIA 190 (672)
Q Consensus 161 ~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~ 190 (672)
+.+..||.+-...++|+.|+.-|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 457789999999999999999999998865
No 312
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=62.72 E-value=14 Score=29.98 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=30.0
Q ss_pred HhCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 005877 155 AEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIA 190 (672)
Q Consensus 155 ~~~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~ 190 (672)
.++++..+.+.||..+...|++++|++.+-+++...
T Consensus 17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 348999999999999999999999999999887754
No 313
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=62.16 E-value=19 Score=28.04 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 409 HMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 409 ~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
.+|+.+.++|++ .-..|++++|+.+|..+++.
T Consensus 4 ~~Ai~~a~~Ave-------------~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 4 RDAVQFARLAVQ-------------RDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHH-------------HHHccCHHHHHHHHHHHHHH
Confidence 456666666665 44578999999999988764
No 314
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.98 E-value=46 Score=36.80 Aligned_cols=78 Identities=13% Similarity=0.159 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCC
Q 005877 334 KNYTKAKEYFEKAADN--------EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVG 403 (672)
Q Consensus 334 ~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L~~~y~~g~g 403 (672)
++|..++++|+.++.. ..+..+.+|..||+. ..+.++|.++++.|-+.+ .+..+...-.....
T Consensus 368 ~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~----L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~--- 440 (872)
T KOG4814|consen 368 EKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLK----LEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLA--- 440 (872)
T ss_pred HHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH---
Confidence 4899999999998763 246778899999999 999999999999997755 55555555544444
Q ss_pred ccCCHHHHHHHHHHHH
Q 005877 404 LKKNLHMATALYKLVA 419 (672)
Q Consensus 404 ~~~~~~~A~~~~~~a~ 419 (672)
.++-++|+....+..
T Consensus 441 -E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 441 -EDKSEEALTCLQKIK 455 (872)
T ss_pred -hcchHHHHHHHHHHH
Confidence 677888888877664
No 315
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=61.69 E-value=1e+02 Score=26.38 Aligned_cols=45 Identities=13% Similarity=-0.032 Sum_probs=26.7
Q ss_pred cCCHHHHHHHHHHHHHcC---Ch-----------hHHHHHHHHHHhcCCHHHHHHHHHH
Q 005877 405 KKNLHMATALYKLVAERG---PW-----------SSLSRWALESYLKGDVGKAFLLYSR 449 (672)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~---~~-----------~a~~~lg~~~~~~g~~~~A~~~~~~ 449 (672)
.+-+++|..-++++.+.. |+ -.+..|+..+...|+|++++..-.+
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~ 80 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADR 80 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 467778888888876653 21 1244566667778888777654433
No 316
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.65 E-value=64 Score=35.75 Aligned_cols=78 Identities=9% Similarity=0.061 Sum_probs=62.5
Q ss_pred hhcHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcC
Q 005877 369 KRDVKLACKYFLVAANA--------GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKG 438 (672)
Q Consensus 369 ~~~~~~A~~~~~~A~~~--------~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g 438 (672)
.++|..+++||+.++.. .....+.+|+.+|.. ....++|+++++.|-+.++ +-..+..-......|
T Consensus 367 ~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~----L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~ 442 (872)
T KOG4814|consen 367 MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLK----LEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAED 442 (872)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhc
Confidence 78999999999999762 134677899999998 8999999999999988874 444555556666788
Q ss_pred CHHHHHHHHHHH
Q 005877 439 DVGKAFLLYSRM 450 (672)
Q Consensus 439 ~~~~A~~~~~~a 450 (672)
+-++|+....+.
T Consensus 443 ~Se~AL~~~~~~ 454 (872)
T KOG4814|consen 443 KSEEALTCLQKI 454 (872)
T ss_pred chHHHHHHHHHH
Confidence 888888887766
No 317
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=60.93 E-value=2.2e+02 Score=29.87 Aligned_cols=151 Identities=7% Similarity=-0.061 Sum_probs=86.9
Q ss_pred cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHH--HHH-------HHHHHHHcCCCCCcCCHHHHHHHHHHH
Q 005877 276 KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYS--AYN-------GIGYLYVKGYGVEKKNYTKAKEYFEKA 346 (672)
Q Consensus 276 ~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~--a~~-------~Lg~~y~~g~g~~~~~~~~A~~~~~~a 346 (672)
+-+..++..++.++.. +||.+.|.+..++|+=.-... ..+ .-|.+.+. - ...+=..+
T Consensus 37 PyHidtLlqls~v~~~----~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~-----~-~~~eNR~f---- 102 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQ----QGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLD-----Y-RRPENRQF---- 102 (360)
T ss_pred CCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccC-----C-ccccchHH----
Confidence 4577888888888888 889998888888876321000 000 00111110 0 00000001
Q ss_pred HhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC---CHH-HHHHHHHHHHcCCCccCCHHHHHHHHHHHHH--
Q 005877 347 ADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG---HQK-AFYQLAKMFHTGVGLKKNLHMATALYKLVAE-- 420 (672)
Q Consensus 347 ~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~-a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~-- 420 (672)
--+.+.......+ .|-+..|.++.+.....+ ++- +.+.+-.+-.. .++++==+..++....
T Consensus 103 -----flal~r~i~~L~~----RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALr----s~~y~~Li~~~~~~~~~~ 169 (360)
T PF04910_consen 103 -----FLALFRYIQSLGR----RGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALR----SRQYQWLIDFSESPLAKC 169 (360)
T ss_pred -----HHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHh----cCCHHHHHHHHHhHhhhh
Confidence 1122233333334 778889999988887754 333 33333333333 5677766777776554
Q ss_pred cC-----ChhHHHHHHHHHHhcCCH---------------HHHHHHHHHHHHc
Q 005877 421 RG-----PWSSLSRWALESYLKGDV---------------GKAFLLYSRMAEL 453 (672)
Q Consensus 421 ~~-----~~~a~~~lg~~~~~~g~~---------------~~A~~~~~~a~~~ 453 (672)
.. -|...+..+.+++..++. ++|...+.+|+..
T Consensus 170 ~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~ 222 (360)
T PF04910_consen 170 YRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILR 222 (360)
T ss_pred hhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHH
Confidence 11 235567778888888777 8999999998775
No 318
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=60.75 E-value=20 Score=28.02 Aligned_cols=33 Identities=21% Similarity=0.209 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 408 LHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 408 ~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
..+|+.+.++|++ .-..|++++|+.+|.++++.
T Consensus 3 ~~~a~~l~~~Ave-------------~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 3 ELAAKEVLKRAVE-------------LDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred hHHHHHHHHHHHH-------------HHHhccHHHHHHHHHHHHHH
Confidence 5667777776665 34578888888888888764
No 319
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=60.22 E-value=12 Score=29.22 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=9.6
Q ss_pred CCCHHHHHHHHHHHHh
Q 005877 557 PLDLHLAKRYYDQALE 572 (672)
Q Consensus 557 ~~d~~~A~~~~~~A~~ 572 (672)
.|++++|+.+|+.|++
T Consensus 19 ~g~y~eA~~~Y~~aie 34 (76)
T cd02681 19 EGRYSEAVFYYKEAAQ 34 (76)
T ss_pred ccCHHHHHHHHHHHHH
Confidence 4566666666666654
No 320
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.13 E-value=4.7 Score=40.78 Aligned_cols=86 Identities=20% Similarity=0.149 Sum_probs=55.2
Q ss_pred hhcHHHHHHHHHHHHHcCCHHH--HHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChh--HHHHHHHHHHhcCCHHHHH
Q 005877 369 KRDVKLACKYFLVAANAGHQKA--FYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS--SLSRWALESYLKGDVGKAF 444 (672)
Q Consensus 369 ~~~~~~A~~~~~~A~~~~~~~a--~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~--a~~~lg~~~~~~g~~~~A~ 444 (672)
.+.+++|++.|..+++.+...+ +-+-+.++.. .+....|+.-|..+++.++.. .+-..|.+...+|++++|.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk----l~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLK----LKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeee----ccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 4567777777777766554333 3344455554 566677777777777776543 3555566666777888888
Q ss_pred HHHHHHHHcCCHHH
Q 005877 445 LLYSRMAELGYEVA 458 (672)
Q Consensus 445 ~~~~~a~~~g~~~a 458 (672)
..+..+++.++..+
T Consensus 203 ~dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 203 HDLALACKLDYDEA 216 (377)
T ss_pred HHHHHHHhccccHH
Confidence 88888877775544
No 321
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=59.21 E-value=26 Score=26.61 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=15.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 005877 433 ESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 433 ~~~~~g~~~~A~~~~~~a~~~ 453 (672)
..-..|++++|+.+|.++++.
T Consensus 14 ~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 14 EADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 355678888888888887653
No 322
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=59.16 E-value=62 Score=29.33 Aligned_cols=68 Identities=13% Similarity=0.014 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHH--HHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHH
Q 005877 106 RVMEEATSEVES--AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHD 177 (672)
Q Consensus 106 ~~~~~A~~~~~~--a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~ 177 (672)
++.+++...+.. ...|+.++....-|.++.. .+++.+|+..++...+ ++.+-+.-.++.|+...+|.+
T Consensus 24 ~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~----r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 24 GDPDDAEALLDALRVLRPEFPELDLFDGWLHIV----RGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred CChHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----hCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 467788888877 6788999999999999988 8999999999999766 466777778888887777753
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.74 E-value=1.5e+02 Score=34.04 Aligned_cols=156 Identities=15% Similarity=0.074 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcC
Q 005877 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG 240 (672)
Q Consensus 161 ~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~ 240 (672)
+.+...|.-+...||+++|..+|-+.+..-...+.. .-+.......+-..+++...+.|
T Consensus 369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi---------------------~kfLdaq~IknLt~YLe~L~~~g 427 (933)
T KOG2114|consen 369 EIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVI---------------------KKFLDAQRIKNLTSYLEALHKKG 427 (933)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHH---------------------HHhcCHHHHHHHHHHHHHHHHcc
Confidence 445556777778899999999998876532111100 00112222334456666666665
Q ss_pred --CHHHHHHHHHHHHhcCCCc---------------ccCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHcCCCC
Q 005877 241 --NAGAMYKIGLFYYFGLRGL---------------RRDRTKALMWFSKAADKG--------EPQSMEFLGEIYARGAGV 295 (672)
Q Consensus 241 --~~~a~~~Lg~~y~~~~~~~---------------~~~~~~A~~~~~~a~~~~--------~~~a~~~Lg~~y~~g~g~ 295 (672)
+.+-...|-.+|.... .+ --|.+.|++.++++==.. ...--..|-.++..
T Consensus 428 la~~dhttlLLncYiKlk-d~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~---- 502 (933)
T KOG2114|consen 428 LANSDHTTLLLNCYIKLK-DVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKHEWVLDILLED---- 502 (933)
T ss_pred cccchhHHHHHHHHHHhc-chHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHH----
Confidence 4444444455554441 11 114666666665531000 00011122233444
Q ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Q 005877 296 ERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAAD 348 (672)
Q Consensus 296 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~ 348 (672)
.+||++|++|+...-=..-.......|.+.+. . ++++-...+-+...
T Consensus 503 ~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll~-----h-~P~~t~~ili~~~t 549 (933)
T KOG2114|consen 503 LHNYEEALRYISSLPISELLRTLNKYGKILLE-----H-DPEETMKILIELIT 549 (933)
T ss_pred hcCHHHHHHHHhcCCHHHHHHHHHHHHHHHHh-----h-ChHHHHHHHHHHHh
Confidence 67888888887653111122345566666664 2 66666665555543
No 324
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=58.37 E-value=37 Score=34.33 Aligned_cols=96 Identities=19% Similarity=0.175 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 005877 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--------GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ 312 (672)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 312 (672)
-.+++...+..|.+.+ |.+.|++++++..++ +..-....||..|.+..-|....++|...+++.
T Consensus 103 v~ea~~~kaeYycqig-----Dkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~G--- 174 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIG-----DKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEG--- 174 (393)
T ss_pred HHHHHHHHHHHHHHhc-----cHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC---
Confidence 3578888999998884 999999999887653 334567888999987655667777777777754
Q ss_pred CCHHHHHHHH----HHHHcCCCCCcCCHHHHHHHHHHHHhC
Q 005877 313 QLYSAYNGIG----YLYVKGYGVEKKNYTKAKEYFEKAADN 349 (672)
Q Consensus 313 ~~~~a~~~Lg----~~y~~g~g~~~~~~~~A~~~~~~a~~~ 349 (672)
|+.+-.+.+- ..... ..|+.+|-.+|-.++..
T Consensus 175 gDWeRrNRlKvY~Gly~ms-----vR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 175 GDWERRNRLKVYQGLYCMS-----VRNFKEAADLFLDSVST 210 (393)
T ss_pred CChhhhhhHHHHHHHHHHH-----HHhHHHHHHHHHHHccc
Confidence 3444333332 11111 23888888888777654
No 325
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=57.46 E-value=31 Score=34.46 Aligned_cols=58 Identities=21% Similarity=0.269 Sum_probs=42.1
Q ss_pred HHHHHHHHHHcCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHH
Q 005877 411 ATALYKLVAERGPW--SSLSRWALESYLKGDVGKAFLLYSRMA--ELGYEVAQSNAAWILDK 468 (672)
Q Consensus 411 A~~~~~~a~~~~~~--~a~~~lg~~~~~~g~~~~A~~~~~~a~--~~g~~~a~~nla~~l~~ 468 (672)
|..||.+|....|. ..+.++|.++...|+.-.|+-+|-+++ ....+.|..|+..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67788888887764 467888888888888888888888884 44567788888888776
No 326
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=57.24 E-value=1e+02 Score=30.64 Aligned_cols=58 Identities=19% Similarity=0.051 Sum_probs=45.9
Q ss_pred HHHHHHHH--HhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHc
Q 005877 491 AHSLWWQA--SEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEH 552 (672)
Q Consensus 491 A~~~~~~a--~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~ 552 (672)
|..+|.+| +.|++..+++.||.++. ..+|.-.|+-||-+++- ...+.|..||..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~----~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLAS----YQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHH----HTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhc----cccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 56788876 45778999999999999 77999999999999965 3567899999999876
No 327
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=56.91 E-value=1.9e+02 Score=28.00 Aligned_cols=31 Identities=13% Similarity=0.131 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCcchhHHHHH
Q 005877 556 LPLDLHLAKRYYDQALEVDPAAKLPVTLALT 586 (672)
Q Consensus 556 ~~~d~~~A~~~~~~A~~~~~~~~~~~~~~~~ 586 (672)
..++...|+.++++|++++|...+-..+.-+
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~l 220 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKCGVKKDIERL 220 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCCChHHHHHHH
Confidence 3578899999999999999988765555443
No 328
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=56.36 E-value=70 Score=38.56 Aligned_cols=118 Identities=15% Similarity=-0.008 Sum_probs=80.7
Q ss_pred HHHHHHHHH---HHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh----------CCCHHHHHHHHHHHhccCC
Q 005877 109 EEATSEVES---AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE----------GGNIQSKMAVAYTYLRQDM 175 (672)
Q Consensus 109 ~~A~~~~~~---a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~----------~~~~~a~~~Lg~~y~~~~~ 175 (672)
.+++.++.. ...+.....+-.|+.++.. .+|.+.|+.+-.+|.- +....++.+|+......++
T Consensus 955 ~~slnl~~~v~~~~h~~~~~~~~~La~l~~~----~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~ 1030 (1236)
T KOG1839|consen 955 PESLNLLNNVMGVLHPEVASKYRSLAKLSNR----LGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKN 1030 (1236)
T ss_pred hhhhhHHHHhhhhcchhHHHHHHHHHHHHhh----hcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccC
Confidence 344446665 4455778888999999988 9999999999999853 1345777888888888889
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHH
Q 005877 176 HDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ 238 (672)
Q Consensus 176 ~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~ 238 (672)
...|+..+.++.....-.+. +.+|....+ ..+++.+....++++.|+.+++.+..
T Consensus 1031 ~~~al~~~~ra~~l~~Ls~g--e~hP~~a~~------~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1031 LSGALKSLNRALKLKLLSSG--EDHPPTALS------FINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred ccchhhhHHHHHHhhccccC--CCCCchhhh------hhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999998876433322 234433322 22455555556666666666666543
No 329
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=55.84 E-value=41 Score=28.81 Aligned_cols=29 Identities=7% Similarity=0.094 Sum_probs=24.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 005877 163 KMAVAYTYLRQDMHDKAVKLYAELAEIAV 191 (672)
Q Consensus 163 ~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~ 191 (672)
++.+|....+.+++-.++-.|++++....
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se 32 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSE 32 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 56788888889999999999999987653
No 330
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=55.72 E-value=25 Score=23.24 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 425 SSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 425 ~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
+.+..||.+....++|++|+.-|+++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34667788888888888888888888664
No 331
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=54.49 E-value=2e+02 Score=28.53 Aligned_cols=46 Identities=11% Similarity=0.154 Sum_probs=32.4
Q ss_pred hHhHHHHHHHHHH-HHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 005877 485 AERHQCAHSLWWQ-ASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHA 534 (672)
Q Consensus 485 ~~~~~~A~~~~~~-a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A 534 (672)
..=.++|++|.+. .-..|+++-+..+|.+|. ..+++.+|..+|-.+
T Consensus 70 ~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~----~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 70 KKFIKAAIKWSKFGSYKFGDPELHHLLAEKLW----KEGNYYEAERHFLLG 116 (260)
T ss_dssp HHHHHHHHHHHHTSS-TT--HHHHHHHHHHHH----HTT-HHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHHHHHH----hhccHHHHHHHHHhc
Confidence 3345677888721 245588999999999999 889999999988664
No 332
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=54.05 E-value=33 Score=26.69 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=16.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 005877 432 LESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 432 ~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
..+-..|++++|+.+|+++++.
T Consensus 14 Ve~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 14 VKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHhcCCHHHHHHHHHHHHHH
Confidence 3356688888899888888764
No 333
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=53.35 E-value=1e+02 Score=26.05 Aligned_cols=38 Identities=21% Similarity=0.207 Sum_probs=24.7
Q ss_pred HhhhccCChHHHHHHHHHHHHc-C-CH---HHHHHHHHHHHhc
Q 005877 218 ALRKSRGEDDEAFQILEYQAQK-G-NA---GAMYKIGLFYYFG 255 (672)
Q Consensus 218 ~~~~~~g~~~~Ai~~~~~aa~~-~-~~---~a~~~Lg~~y~~~ 255 (672)
.-+..+|++-+|+++.+..+.. | +. .....-|.+++..
T Consensus 4 ~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~l 46 (111)
T PF04781_consen 4 KDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKL 46 (111)
T ss_pred HHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHH
Confidence 3456788899999999987544 2 22 4455556666544
No 334
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=52.57 E-value=42 Score=21.72 Aligned_cols=31 Identities=29% Similarity=0.226 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh
Q 005877 457 VAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE 500 (672)
Q Consensus 457 ~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 500 (672)
.+++|+||.|-+ +...++..+.+.+++...+
T Consensus 2 qt~FnyAw~Lv~-------------S~~~~d~~~Gi~lLe~l~~ 32 (35)
T PF14852_consen 2 QTQFNYAWGLVK-------------SNNREDQQEGIALLEELYR 32 (35)
T ss_dssp HHHHHHHHHHHH-------------SSSHHHHHHHHHHHHHHCC
T ss_pred cchhHHHHHHhc-------------CCCHHHHHHHHHHHHHHHh
Confidence 568999999988 4447788999998886544
No 335
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=52.01 E-value=1.7e+02 Score=25.77 Aligned_cols=58 Identities=17% Similarity=0.063 Sum_probs=38.4
Q ss_pred cCCHHHHHHHHHHHHH--cCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005877 405 KKNLHMATALYKLVAE--RGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNA 462 (672)
Q Consensus 405 ~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nl 462 (672)
++.-++=-..+....+ ..+|+.+..+|.+|-+.|+..+|-..+.+|.+.|-.+|-.|+
T Consensus 99 ~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~kEAC~nI 158 (161)
T PF09205_consen 99 QGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLKEACRNI 158 (161)
T ss_dssp TT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred hccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchHHHHHHh
Confidence 3444444444444442 336778888999999999999999999999999988887664
No 336
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.00 E-value=7.7 Score=39.30 Aligned_cols=86 Identities=15% Similarity=0.026 Sum_probs=67.4
Q ss_pred hHhHHHHHHHHHHHHhCCCHHHH--HHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCH
Q 005877 485 AERHQCAHSLWWQASEQGNEHAA--LLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDL 560 (672)
Q Consensus 485 ~~~~~~A~~~~~~a~~~~~~~a~--~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~ 560 (672)
.+.+++|++.+..+++..+..+. .+-+.++. ..+....|++-+..|++. +.+..+-.-|+.+.. .++.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~l----kl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl----lg~~ 198 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFL----KLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL----LGNW 198 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceee----eccCCchhhhhhhhhhccCcccccccchhhHHHHH----hhch
Confidence 45689999999999888775554 48899998 889999999999999886 344444445666554 8899
Q ss_pred HHHHHHHHHHHhcCCCCc
Q 005877 561 HLAKRYYDQALEVDPAAK 578 (672)
Q Consensus 561 ~~A~~~~~~A~~~~~~~~ 578 (672)
.+|.+++..|++++-+-.
T Consensus 199 e~aa~dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 199 EEAAHDLALACKLDYDEA 216 (377)
T ss_pred HHHHHHHHHHHhccccHH
Confidence 999999999999986643
No 337
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=49.87 E-value=35 Score=26.66 Aligned_cols=16 Identities=13% Similarity=0.158 Sum_probs=11.2
Q ss_pred CHHHHHHHHHHHHHHH
Q 005877 175 MHDKAVKLYAELAEIA 190 (672)
Q Consensus 175 ~~~~A~~~y~~a~~~~ 190 (672)
.+.+|+.+..++++.+
T Consensus 2 ~~~~a~~l~~~Ave~D 17 (77)
T cd02683 2 LELAAKEVLKRAVELD 17 (77)
T ss_pred chHHHHHHHHHHHHHH
Confidence 3567888888877644
No 338
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.07 E-value=4e+02 Score=29.26 Aligned_cols=230 Identities=15% Similarity=0.137 Sum_probs=111.2
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHH
Q 005877 157 GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQ 236 (672)
Q Consensus 157 ~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~a 236 (672)
+.++.-.+.-+.++...|+.+.|+..++..++...+.+. .......+..+..+.++..|...+...
T Consensus 264 p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~--------------~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 264 PKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVK--------------SLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred CCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 445555555566666666688888888776662222110 011123455555666777777777766
Q ss_pred HHcC---CHHHHHHHHHHHHhcCCCc---ccCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHcCCCCcCCHHHHHH
Q 005877 237 AQKG---NAGAMYKIGLFYYFGLRGL---RRDRTKALMWFSKAADK------GEPQSMEFLGEIYARGAGVERNYTKALE 304 (672)
Q Consensus 237 a~~~---~~~a~~~Lg~~y~~~~~~~---~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 304 (672)
.+.. ..-..+..|-+++.....+ .++.++|-.+++...+. +.|.- .--..|+.+
T Consensus 330 ~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E--------------~f~~RKver 395 (546)
T KOG3783|consen 330 RDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLE--------------KFIVRKVER 395 (546)
T ss_pred HhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchh--------------HHHHHHHHH
Confidence 5553 3444444555554432111 12444444444433221 11100 011223333
Q ss_pred HHHHHH-HcCCHH--HHHHHHHHHHcCCCCCcCCHHHHHHHHH-HHHhCCCHHH--HHHHHHHHHcCCCchhcHHHHHHH
Q 005877 305 WLTHAA-RQQLYS--AYNGIGYLYVKGYGVEKKNYTKAKEYFE-KAADNEEAGG--HYNLGVMYYKGIGVKRDVKLACKY 378 (672)
Q Consensus 305 ~~~~a~-~~~~~~--a~~~Lg~~y~~g~g~~~~~~~~A~~~~~-~a~~~~~~~a--~~~Lg~~y~~g~g~~~~~~~A~~~ 378 (672)
+-.+.- ....+. .+..+..++.--......+..+...-++ ...+..+.+. .+-+|.++.+ .++...|..+
T Consensus 396 f~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~----Lg~~~~a~~~ 471 (546)
T KOG3783|consen 396 FVKRGPLNASILLASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRN----LGDSEVAPKC 471 (546)
T ss_pred HhccccccccccccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHH----cCCHHHHHHH
Confidence 322221 000111 2344554442111112212221111111 1121112222 2456777777 7788888888
Q ss_pred HHHHHHc---------CCHHHHHHHHHHHHcCCCccC-CHHHHHHHHHHHHHcC
Q 005877 379 FLVAANA---------GHQKAFYQLAKMFHTGVGLKK-NLHMATALYKLVAERG 422 (672)
Q Consensus 379 ~~~A~~~---------~~~~a~~~L~~~y~~g~g~~~-~~~~A~~~~~~a~~~~ 422 (672)
|+..++. -.|.|.|.+|.+|.. .+ -..++..|+.+|-+..
T Consensus 472 f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~----~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 472 FKIQVEKESKRTEDLWAVPFALYELALLYWD----LGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHh----cccChHHHHHHHHHHHhhc
Confidence 8877642 136788888888877 33 4888888888887765
No 339
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=48.20 E-value=30 Score=26.88 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 408 LHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 408 ~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
.++|+.+.++|++. -..|++++|+.+|..+++.
T Consensus 3 l~~Ai~lv~~Av~~-------------D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 3 LEKAIALVVQAVKK-------------DQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHH-------------HHhccHHHHHHHHHHHHHH
Confidence 45666666666543 3467778888888777663
No 340
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=47.11 E-value=17 Score=38.70 Aligned_cols=84 Identities=14% Similarity=-0.034 Sum_probs=67.0
Q ss_pred hhhHHHHHHHHHHHHhCC--ChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHH
Q 005877 105 VRVMEEATSEVESAAMEG--DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAV 180 (672)
Q Consensus 105 ~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~ 180 (672)
.++|+.|+..|.++++.. ++.....-+..+.. ..++..|+.=..+|++ +....+++.-|..++..+.+.+|+
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK----~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK----VESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhhee----echhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence 478999999999988764 45555555566666 7889999988888887 567788888899999999999999
Q ss_pred HHHHHHHHHHHh
Q 005877 181 KLYAELAEIAVN 192 (672)
Q Consensus 181 ~~y~~a~~~~~~ 192 (672)
..|+......|+
T Consensus 93 ~~l~~~~~l~Pn 104 (476)
T KOG0376|consen 93 LDLEKVKKLAPN 104 (476)
T ss_pred HHHHHhhhcCcC
Confidence 999988775543
No 341
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=46.44 E-value=48 Score=25.07 Aligned_cols=16 Identities=19% Similarity=0.356 Sum_probs=11.7
Q ss_pred ccCChHHHHHHHHHHH
Q 005877 222 SRGEDDEAFQILEYQA 237 (672)
Q Consensus 222 ~~g~~~~Ai~~~~~aa 237 (672)
..|++++|+.+|..++
T Consensus 17 ~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 17 EAGNYEEALELYKEAI 32 (69)
T ss_dssp HTTSHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5678888887777654
No 342
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=46.05 E-value=73 Score=32.30 Aligned_cols=95 Identities=22% Similarity=0.217 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----C----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC-
Q 005877 279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ----Q----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN- 349 (672)
Q Consensus 279 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~----~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~- 349 (672)
.+++.+.+..|-+ .+|.+.|.+++++..+. | ..-....||.+|..-.-+.+ ..++|-..+++.-+=
T Consensus 104 ~ea~~~kaeYycq----igDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~-~iekak~liE~GgDWe 178 (393)
T KOG0687|consen 104 REAMLRKAEYYCQ----IGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTE-SIEKAKSLIEEGGDWE 178 (393)
T ss_pred HHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHH-HHHHHHHHHHhCCChh
Confidence 5688888888888 89999999998887654 2 33456678888864222222 445555555443211
Q ss_pred --CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH
Q 005877 350 --EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN 384 (672)
Q Consensus 350 --~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 384 (672)
+.-.++. |...+. .+|+++|-..|..++.
T Consensus 179 RrNRlKvY~--Gly~ms----vR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 179 RRNRLKVYQ--GLYCMS----VRNFKEAADLFLDSVS 209 (393)
T ss_pred hhhhHHHHH--HHHHHH----HHhHHHHHHHHHHHcc
Confidence 1122222 333333 5577777777766654
No 343
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=46.05 E-value=4.5e+02 Score=28.98 Aligned_cols=66 Identities=11% Similarity=-0.146 Sum_probs=51.7
Q ss_pred HhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 005877 119 AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEI 189 (672)
Q Consensus 119 ~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~ 189 (672)
.+|.|.++++.|-.-+.. + -+++..+.|++.+. +..+.+...-...-+..++++.-.+.|.+.+..
T Consensus 15 ~nP~di~sw~~lire~qt----~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQT----Q-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred cCCccHHHHHHHHHHHcc----C-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 345677888888777664 3 78888888988877 577888888888888888898888888887763
No 344
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=45.24 E-value=1.4e+02 Score=33.78 Aligned_cols=70 Identities=24% Similarity=0.255 Sum_probs=43.3
Q ss_pred CCcccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcC-----CCCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 005877 257 RGLRRDRTKALMWFSKAADKG---EPQSMEFLGEIYARG-----AGVERNYTKALEWLTHAARQQ-LYSAYNGIGYLYV 326 (672)
Q Consensus 257 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g-----~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~ 326 (672)
+..++|.++|+...-.++++. .|..+-..|.+|.+- ..-.+..+.|++||++|.+.. ...+-.+++.+..
T Consensus 253 RNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~ 331 (1226)
T KOG4279|consen 253 RNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLR 331 (1226)
T ss_pred cCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHH
Confidence 456678888888877777652 355566667777542 222456678889999988753 2233334444444
No 345
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.74 E-value=3.4e+02 Score=26.93 Aligned_cols=64 Identities=14% Similarity=0.174 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHcCCCC---CCCHHHHHHHHHHHHhcCCCCcchhHHHHHH
Q 005877 521 QRDYERAAEAYMHARSQ----SNAQAMFNLGYMHEHGQGL---PLDLHLAKRYYDQALEVDPAAKLPVTLALTS 587 (672)
Q Consensus 521 ~~d~~~A~~~~~~A~~~----~~~~a~~~Lg~~y~~g~g~---~~d~~~A~~~~~~A~~~~~~~~~~~~~~~~~ 587 (672)
+++-.+-...|++|+.. .+|.. +|.+-+-|... .|.+++|-.-|=.|...-.++.-|.....++
T Consensus 204 qKnNKkLK~lYeqalhiKSAIPHPlI---mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLK 274 (440)
T KOG1464|consen 204 QKNNKKLKALYEQALHIKSAIPHPLI---MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLK 274 (440)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHH---HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHH
Confidence 34444444445555432 33433 24444443222 4555555555555555555555555444433
No 346
>PF13041 PPR_2: PPR repeat family
Probab=42.00 E-value=73 Score=22.00 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877 426 SLSRWALESYLKGDVGKAFLLYSRMAELG 454 (672)
Q Consensus 426 a~~~lg~~~~~~g~~~~A~~~~~~a~~~g 454 (672)
++..+-..+.+.|++++|...|++..+.|
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 34445555666777777777777776666
No 347
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=41.73 E-value=36 Score=26.37 Aligned_cols=16 Identities=38% Similarity=0.430 Sum_probs=9.4
Q ss_pred CCCHHHHHHHHHHHHh
Q 005877 557 PLDLHLAKRYYDQALE 572 (672)
Q Consensus 557 ~~d~~~A~~~~~~A~~ 572 (672)
.|++++|+.+|..|++
T Consensus 19 ~g~y~eA~~~Y~~aie 34 (75)
T cd02678 19 AGNYEEALRLYQHALE 34 (75)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4566666666666554
No 348
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=41.62 E-value=98 Score=26.61 Aligned_cols=58 Identities=17% Similarity=0.107 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------------CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHH
Q 005877 427 LSRWALESYLKGDVGKAFLLYSRMAELG-----------------YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQ 489 (672)
Q Consensus 427 ~~~lg~~~~~~g~~~~A~~~~~~a~~~g-----------------~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~ 489 (672)
+..+|...++.+++-.++-.|++|+... ......|+|.++.. .++.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~----------------~gd~~ 67 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRS----------------QGDSD 67 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHH----------------cCChH
Confidence 4456666777777777777777774321 23446688888876 44556
Q ss_pred HHHHHHHHHHh
Q 005877 490 CAHSLWWQASE 500 (672)
Q Consensus 490 ~A~~~~~~a~~ 500 (672)
-.++|++.|.+
T Consensus 68 yELkYLqlASE 78 (140)
T PF10952_consen 68 YELKYLQLASE 78 (140)
T ss_pred HHHHHHHHHHH
Confidence 66666665543
No 349
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=41.22 E-value=34 Score=32.84 Aligned_cols=52 Identities=15% Similarity=0.017 Sum_probs=44.6
Q ss_pred cCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Q 005877 141 ERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVN 192 (672)
Q Consensus 141 ~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~ 192 (672)
.+|.+.|.+.|.+++.. .....++.+|......|+.+.|..-|++.+++++.
T Consensus 8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 8 SGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred cCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 67888999999998874 67788899999999999999999999999887654
No 350
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=41.00 E-value=44 Score=25.97 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH
Q 005877 262 DRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR 311 (672)
Q Consensus 262 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 311 (672)
..++|+...++|++.+. .+++++|+.+|..+++
T Consensus 2 ~l~~Ai~lv~~Av~~D~-----------------~g~y~eA~~lY~~ale 34 (75)
T cd02684 2 SLEKAIALVVQAVKKDQ-----------------RGDAAAALSLYCSALQ 34 (75)
T ss_pred cHHHHHHHHHHHHHHHH-----------------hccHHHHHHHHHHHHH
Confidence 35677777777766542 5777777777777765
No 351
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=40.21 E-value=60 Score=25.53 Aligned_cols=34 Identities=15% Similarity=0.009 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005877 406 KNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (672)
Q Consensus 406 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 452 (672)
+.+++|..+..+++. +-+.|+.++|+.+|+++++
T Consensus 3 ~~~~~A~~~I~kaL~-------------~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 3 GYYKQAFEEISKALR-------------ADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred hHHHHHHHHHHHHhh-------------hhhcCCHHHHHHHHHHHHH
Confidence 345666666666654 3446788888888888854
No 352
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=39.81 E-value=99 Score=24.30 Aligned_cols=44 Identities=9% Similarity=-0.009 Sum_probs=31.2
Q ss_pred cCCHHHHHHHHHHHHHcCC--hh---HHHHHHHHHHhcCCHHHHHHHHH
Q 005877 405 KKNLHMATALYKLVAERGP--WS---SLSRWALESYLKGDVGKAFLLYS 448 (672)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~~--~~---a~~~lg~~~~~~g~~~~A~~~~~ 448 (672)
..+.++|+..++++++... +. ++-.+..++...|+|++.+.+-.
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888887752 22 34445556888888888777643
No 353
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=39.45 E-value=72 Score=24.68 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=14.3
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 005877 434 SYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 434 ~~~~g~~~~A~~~~~~a~~~ 453 (672)
.-..|++++|+.+|.++++.
T Consensus 16 ~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 16 EDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 34567888888888877653
No 354
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=39.42 E-value=4e+02 Score=26.75 Aligned_cols=81 Identities=15% Similarity=-0.005 Sum_probs=68.4
Q ss_pred hhhHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHH
Q 005877 105 VRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKL 182 (672)
Q Consensus 105 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~ 182 (672)
...+..=+...++..+.....++..++..+.. .++.+.+.+.++..+. +-+...+..|-..|...|+..+|+..
T Consensus 134 d~~f~~WV~~~R~~l~e~~~~~l~~lae~~~~----~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~ 209 (280)
T COG3629 134 DDRFDEWVLEQRRALEELFIKALTKLAEALIA----CGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRA 209 (280)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHH
Confidence 34466666666667777778889999999988 8899999999999876 56789999999999999999999999
Q ss_pred HHHHHHH
Q 005877 183 YAELAEI 189 (672)
Q Consensus 183 y~~a~~~ 189 (672)
|+++-+.
T Consensus 210 y~~l~~~ 216 (280)
T COG3629 210 YRQLKKT 216 (280)
T ss_pred HHHHHHH
Confidence 9998775
No 355
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=39.05 E-value=5.1e+02 Score=27.70 Aligned_cols=30 Identities=17% Similarity=0.083 Sum_probs=24.4
Q ss_pred CHHHHH-HHHHHHhccCCHHHHHHHHHHHHH
Q 005877 159 NIQSKM-AVAYTYLRQDMHDKAVKLYAELAE 188 (672)
Q Consensus 159 ~~~a~~-~Lg~~y~~~~~~~~A~~~y~~a~~ 188 (672)
.++.++ .||..+.-.+||+-|...|+.+.+
T Consensus 206 S~E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~ 236 (414)
T PF12739_consen 206 SPEAQMRRLADLAFMLRDYELAYSTYRLLKK 236 (414)
T ss_pred ChHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 445554 499999999999999999998765
No 356
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=39.04 E-value=49 Score=25.71 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=20.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHh
Q 005877 165 AVAYTYLRQDMHDKAVKLYAELAEIAVN 192 (672)
Q Consensus 165 ~Lg~~y~~~~~~~~A~~~y~~a~~~~~~ 192 (672)
..|.-+...|++++|+.+|+++++.-..
T Consensus 11 ~~AVe~D~~gr~~eAi~~Y~~aIe~L~q 38 (75)
T cd02682 11 INAVKAEKEGNAEDAITNYKKAIEVLSQ 38 (75)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 3444556778999999999988886544
No 357
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=38.22 E-value=48 Score=25.80 Aligned_cols=32 Identities=31% Similarity=0.450 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 409 HMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 409 ~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
.+|+..+++|++.+ ..|++++|+.+|..+++.
T Consensus 4 ~~A~~l~~~Ave~d-------------~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 4 EQAAELIRLALEKE-------------EEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHH-------------HHhhHHHHHHHHHHHHHH
Confidence 45666666665433 347777888877777653
No 358
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=37.26 E-value=60 Score=19.27 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=17.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877 428 SRWALESYLKGDVGKAFLLYSRMAELG 454 (672)
Q Consensus 428 ~~lg~~~~~~g~~~~A~~~~~~a~~~g 454 (672)
..+-..+.+.|++++|...|++..+.|
T Consensus 4 ~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 4 NSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred HHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 344556667777777777777765543
No 359
>PF12854 PPR_1: PPR repeat
Probab=36.81 E-value=74 Score=20.12 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005877 424 WSSLSRWALESYLKGDVGKAFLLYSR 449 (672)
Q Consensus 424 ~~a~~~lg~~~~~~g~~~~A~~~~~~ 449 (672)
..++..+-..+.+.|+.++|++.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34567778889999999999998875
No 360
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=36.56 E-value=5e+02 Score=26.82 Aligned_cols=183 Identities=14% Similarity=0.033 Sum_probs=0.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcC-CHH
Q 005877 165 AVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG-NAG 243 (672)
Q Consensus 165 ~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~-~~~ 243 (672)
.|..+|...++|.+|+.....++. .+++.-++. -.+
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~r-------------------------------------------ElKKlDDK~lLve 169 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLR-------------------------------------------ELKKLDDKILLVE 169 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHH-------------------------------------------HHHhcccccceee
Q ss_pred HHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--
Q 005877 244 AMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE---------PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-- 312 (672)
Q Consensus 244 a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~---------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-- 312 (672)
.++.=...|+.. +|..+|...+.-|--..+ +..-..-|.++.. ..||..|..||-.|.+.
T Consensus 170 v~llESK~y~~l-----~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~----ekDykTafSYFyEAfEgf~ 240 (411)
T KOG1463|consen 170 VHLLESKAYHAL-----RNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAA----EKDYKTAFSYFYEAFEGFD 240 (411)
T ss_pred ehhhhhHHHHHH-----hcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeec----ccccchHHHHHHHHHcccc
Q ss_pred ---CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHH
Q 005877 313 ---QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQK 389 (672)
Q Consensus 313 ---~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~ 389 (672)
.+..|...|-.|.+--.-...-+--.++---+.+++...++.-...+..-..+....+|+++|+.-|+.-+.. ++.
T Consensus 241 s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~-D~i 319 (411)
T KOG1463|consen 241 SLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAE-DPI 319 (411)
T ss_pred ccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhc-ChH
Q ss_pred HHHHHHHHHHc
Q 005877 390 AFYQLAKMFHT 400 (672)
Q Consensus 390 a~~~L~~~y~~ 400 (672)
....+..+|.+
T Consensus 320 vr~Hl~~Lyd~ 330 (411)
T KOG1463|consen 320 VRSHLQSLYDN 330 (411)
T ss_pred HHHHHHHHHHH
No 361
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=36.50 E-value=84 Score=24.29 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=14.1
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 005877 434 SYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 434 ~~~~g~~~~A~~~~~~a~~~ 453 (672)
.-..|++++|+.+|..+++.
T Consensus 18 ~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 18 ADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 34467888888888877653
No 362
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=35.71 E-value=3e+02 Score=27.65 Aligned_cols=80 Identities=9% Similarity=0.047 Sum_probs=60.0
Q ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCchhcHH
Q 005877 296 ERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVK 373 (672)
Q Consensus 296 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~ 373 (672)
...+...+.-.+++++.....++..+...+.. .++++.++..+++.++.+ +-.++..+=..|.. .++..
T Consensus 134 d~~f~~WV~~~R~~l~e~~~~~l~~lae~~~~-----~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~----~g~~~ 204 (280)
T COG3629 134 DDRFDEWVLEQRRALEELFIKALTKLAEALIA-----CGRADAVIEHLERLIELDPYDEPAYLRLMEAYLV----NGRQS 204 (280)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHHHhcCccchHHHHHHHHHHHH----cCCch
Confidence 45577888888888887778888888888875 457888888888887775 55666666666766 67888
Q ss_pred HHHHHHHHHHH
Q 005877 374 LACKYFLVAAN 384 (672)
Q Consensus 374 ~A~~~~~~A~~ 384 (672)
.|+..|++..+
T Consensus 205 ~ai~~y~~l~~ 215 (280)
T COG3629 205 AAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHH
Confidence 88888777644
No 363
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.31 E-value=8.7e+02 Score=29.24 Aligned_cols=377 Identities=13% Similarity=0.078 Sum_probs=0.0
Q ss_pred CCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHH--------
Q 005877 83 GAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFA-------- 154 (672)
Q Consensus 83 ~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A-------- 154 (672)
..|...-.+|...+. .+...+|+.-|-++.++++-.--...+.- .+.+++-+.|+.-|
T Consensus 1102 n~p~vWsqlakAQL~-------~~~v~dAieSyikadDps~y~eVi~~a~~-------~~~~edLv~yL~MaRkk~~E~~ 1167 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQ-------GGLVKDAIESYIKADDPSNYLEVIDVASR-------TGKYEDLVKYLLMARKKVREPY 1167 (1666)
T ss_pred CChHHHHHHHHHHHh-------cCchHHHHHHHHhcCCcHHHHHHHHHHHh-------cCcHHHHHHHHHHHHHhhcCcc
Q ss_pred ---------------------HhCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCch
Q 005877 155 ---------------------AEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAE 213 (672)
Q Consensus 155 ---------------------~~~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 213 (672)
+...|..-.-..|..+...+.|+.|.-.|..+-. .
T Consensus 1168 id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN------------------------~ 1223 (1666)
T KOG0985|consen 1168 IDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN------------------------F 1223 (1666)
T ss_pred chHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh------------------------H
Q ss_pred hhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcC-----CHHHHHHHHHH
Q 005877 214 ENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG-----EPQSMEFLGEI 288 (672)
Q Consensus 214 ~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~ 288 (672)
..++......|+|+-|++.-+++. +...+-..+.....+ +-|+-|---| ++.-+-.|-..
T Consensus 1224 a~La~TLV~LgeyQ~AVD~aRKAn---s~ktWK~VcfaCvd~------------~EFrlAQiCGL~iivhadeLeeli~~ 1288 (1666)
T KOG0985|consen 1224 AKLASTLVYLGEYQGAVDAARKAN---STKTWKEVCFACVDK------------EEFRLAQICGLNIIVHADELEELIEY 1288 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcc---chhHHHHHHHHHhch------------hhhhHHHhcCceEEEehHhHHHHHHH
Q ss_pred HHcCCCCcCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC----------CCHHHHH
Q 005877 289 YARGAGVERNYTKALEWLTHAA--RQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----------EEAGGHY 356 (672)
Q Consensus 289 y~~g~g~~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----------~~~~a~~ 356 (672)
|.+ .|-+++-+..++.++ +..+..-...|+.+|.. - .+++-.+.++---.. +.+.-|.
T Consensus 1289 Yq~----rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk-----y-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ 1358 (1666)
T KOG0985|consen 1289 YQD----RGYFEELISLLEAGLGLERAHMGMFTELAILYSK-----Y-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWS 1358 (1666)
T ss_pred HHh----cCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh-----c-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Q ss_pred HHHHHHHcCCCchhcHHHH--------------------------HHHHHHHHH---cCCHHHHHHHHHHHHcCCCccCC
Q 005877 357 NLGVMYYKGIGVKRDVKLA--------------------------CKYFLVAAN---AGHQKAFYQLAKMFHTGVGLKKN 407 (672)
Q Consensus 357 ~Lg~~y~~g~g~~~~~~~A--------------------------~~~~~~A~~---~~~~~a~~~L~~~y~~g~g~~~~ 407 (672)
.|-.+|.+ -..++.| ++.|-+|++ .-+|.....|=.++.- .=|
T Consensus 1359 ElvfLY~~----y~eyDNAa~tmm~h~teaw~~~~FKdii~kVaNvElyYkAi~FYl~~~P~llnDlL~vL~p----RlD 1430 (1666)
T KOG0985|consen 1359 ELVFLYDK----YEEYDNAALTMMEHPTEAWDHGQFKDIITKVANVELYYKAIQFYLDFHPLLLNDLLTVLSP----RLD 1430 (1666)
T ss_pred HHHHHHHh----hhhhhHHHHHHHhCChhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHHHHhccc----ccC
Q ss_pred HHHHHHHHHHH-------------HHcCChhHHHHHHHHHHhcCCHH------------HHHHHHHHHHHcCCHHHHHHH
Q 005877 408 LHMATALYKLV-------------AERGPWSSLSRWALESYLKGDVG------------KAFLLYSRMAELGYEVAQSNA 462 (672)
Q Consensus 408 ~~~A~~~~~~a-------------~~~~~~~a~~~lg~~~~~~g~~~------------~A~~~~~~a~~~g~~~a~~nl 462 (672)
...++.+|.++ ...++....-.+-..+....||. ..+..-++.-+..-..-..-.
T Consensus 1431 h~r~v~~f~K~~~lpLikpyl~~vq~~Nn~avNealn~l~ieeEDy~~Lr~sid~~D~FD~i~LAq~lEkH~L~efrria 1510 (1666)
T KOG0985|consen 1431 HTRTVSIFSKAGQLPLIKPYLRAVQSLNNKAVNEALNDLLIEEEDYQGLRDSIDAYDNFDNIGLAQRLEKHELVEFRRIA 1510 (1666)
T ss_pred chHHHHHHHhcCCCcccHHHHHHHHhcchHHHHHHHHHHhhhHHHHHHHHHhhhhhcchhHHHHHHHhhhhhhHHHHHHH
Q ss_pred HHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHH----------HHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 005877 463 AWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQ----------ASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYM 532 (672)
Q Consensus 463 a~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~----------a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~ 532 (672)
|++|.. .+++...+++.++ |++.++.+..-.|=..+. ..++++--..++-
T Consensus 1511 Aylyk~----------------n~rW~qSiel~Kkd~lyKDame~Aa~S~~~~lae~Ll~~F~----e~g~~ecFaa~Ly 1570 (1666)
T KOG0985|consen 1511 AYLYKG----------------NNRWKQSIELCKKDKLYKDAMETAAESRDTELAEELLQYFL----EEGKRECFAACLY 1570 (1666)
T ss_pred HHHHhc----------------cchHHHHHHHhhhhhHHHHHHHHHHhcCChHHHHHHHHHHH----HhccHHHHHHHHH
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 005877 533 HARSQSNAQAMFNLGYMH 550 (672)
Q Consensus 533 ~A~~~~~~~a~~~Lg~~y 550 (672)
.+-..-.|+....|+|++
T Consensus 1571 ~cYdLlrpd~vlElaW~~ 1588 (1666)
T KOG0985|consen 1571 TCYDLLRPDVVLELAWRH 1588 (1666)
T ss_pred HHHHhcChHHHHHHHHHh
No 364
>TIGR03778 VPDSG_CTERM VPDSG-CTERM exosortase interaction domain. Through in silico analysis, we previously described the PEP-CTERM/exosortase system (PubMed:16930487). This model describes a PEP-CTERM-like variant C-terminal protein sorting signal, as found at the C-terminus of twenty otherwise unrelated proteins in Verrucomicrobiae bacterium DG1235. The variant motif, VPDSG, seems an intermediate between the VPEP motif (TIGR02595) of typical exosortase systems and the classical LPXTG of sortase in Gram-positive bacteria.
Probab=35.01 E-value=66 Score=19.24 Aligned_cols=21 Identities=38% Similarity=0.371 Sum_probs=12.7
Q ss_pred cHHHHHHHHHHHHHHHHHHhh
Q 005877 626 NVTILTLFVCLLTVLYLRERQ 646 (672)
Q Consensus 626 ~~~~~~~~~~~~~~~~~r~~~ 646 (672)
..++..+.+++.+++..|||.
T Consensus 5 GST~~Ll~~~l~~l~~~rRr~ 25 (26)
T TIGR03778 5 GSTLALLGLGLLGLLGLRRRX 25 (26)
T ss_pred hhHHHHHHHHHHHHHHHhhcc
Confidence 345556666666666666653
No 365
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=34.70 E-value=3e+02 Score=33.53 Aligned_cols=119 Identities=17% Similarity=0.093 Sum_probs=73.9
Q ss_pred hHhhhccCChHHHHH------HHHHH---HHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-------CC--
Q 005877 217 GALRKSRGEDDEAFQ------ILEYQ---AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-------GE-- 278 (672)
Q Consensus 217 ~~~~~~~g~~~~Ai~------~~~~a---a~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-------~~-- 278 (672)
+......+.+.++.+ ++..- ..+..+..+..|+.++... +|+++|+.+=.+++-. +.
T Consensus 939 gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~-----~d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen 939 GQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRL-----GDNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred hhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhh-----cchHHHHHhcccceeeechhccCCCHH
Confidence 333445566666666 33321 2334567788889988777 4999999998887531 33
Q ss_pred -HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Q 005877 279 -PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-------QL---YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAA 347 (672)
Q Consensus 279 -~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~ 347 (672)
..++.+++..... ..+...|+..+.++.+. .+ +....+++.++.. .++++.|+++.+.|.
T Consensus 1014 t~~~y~nlal~~f~----~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~-----v~e~d~al~~le~A~ 1084 (1236)
T KOG1839|consen 1014 TKLAYGNLALYEFA----VKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLG-----VEEADTALRYLESAL 1084 (1236)
T ss_pred HHHHhhHHHHHHHh----ccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhh-----HHHHHHHHHHHHHHH
Confidence 3455555544444 45777777777777653 11 2234567777643 347888888888886
Q ss_pred hC
Q 005877 348 DN 349 (672)
Q Consensus 348 ~~ 349 (672)
..
T Consensus 1085 a~ 1086 (1236)
T KOG1839|consen 1085 AK 1086 (1236)
T ss_pred HH
Confidence 53
No 366
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=34.35 E-value=4.9e+02 Score=26.12 Aligned_cols=46 Identities=20% Similarity=0.282 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005877 503 NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHE 551 (672)
Q Consensus 503 ~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~ 551 (672)
..+++...+..|-+. ...||..|..-|+.-+.. ++-.-.+|-.+|.
T Consensus 282 ~I~am~avaea~~NR--sL~df~~aL~qY~~el~~-D~~iRsHl~~LYD 327 (421)
T COG5159 282 MIRAMLAVAEAFGNR--SLKDFSDALAQYSDELHQ-DSFIRSHLQYLYD 327 (421)
T ss_pred hHHHHHHHHHHhCCC--cHhhHHHHHHHhhHHhcc-CHHHHHHHHHHHH
Confidence 355666666666543 678899998888876643 4445555555553
No 367
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=34.07 E-value=3.6e+02 Score=24.49 Aligned_cols=65 Identities=17% Similarity=0.045 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHH
Q 005877 520 TQRDYERAAEAYMH--ARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPVTLALTSL 588 (672)
Q Consensus 520 ~~~d~~~A~~~~~~--A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~~~~~~~ 588 (672)
..++.+.+...+.- .+.++.+....--|++|-. .+++..|++.++...+-.|.......+..+.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~----r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIV----RGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----hCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 45577777666554 3566788888888888876 78888888888887666665544343333333
No 368
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.56 E-value=7.2e+02 Score=28.98 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 427 LSRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 427 ~~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
+...|..++.+||+++|..+|-+++..
T Consensus 371 ~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 371 HRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 445566666777777777777766443
No 369
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=32.99 E-value=55 Score=25.47 Aligned_cols=31 Identities=26% Similarity=0.291 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Q 005877 525 ERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALE 572 (672)
Q Consensus 525 ~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 572 (672)
.+|+..+++|++.+. .+++++|..+|..+++
T Consensus 4 ~~A~~l~~~Ave~d~-----------------~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 4 EQAAELIRLALEKEE-----------------EGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHHHHHHHHHHHHHH-----------------HhhHHHHHHHHHHHHH
Confidence 456666666655432 2556666666666554
No 370
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=32.98 E-value=59 Score=25.06 Aligned_cols=16 Identities=25% Similarity=0.304 Sum_probs=9.9
Q ss_pred CCCHHHHHHHHHHHHh
Q 005877 557 PLDLHLAKRYYDQALE 572 (672)
Q Consensus 557 ~~d~~~A~~~~~~A~~ 572 (672)
.+++++|+.+|..|++
T Consensus 19 ~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 19 DGNYEEALELYKEALD 34 (75)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 3566666666666654
No 371
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=32.43 E-value=8.9e+02 Score=28.49 Aligned_cols=61 Identities=8% Similarity=-0.016 Sum_probs=38.6
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhc---C--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Q 005877 508 LLIGDAYYYGRGTQRDYERAAEAYMHARSQ---S--NAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALE 572 (672)
Q Consensus 508 ~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~---~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 572 (672)
+.|+.+++ ..||+++|...+...... + +....-+.-.+-...+-..+|..+|..+..+...
T Consensus 622 ~~LA~l~~----~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~~ 687 (894)
T COG2909 622 SMLAELEF----LRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSGD 687 (894)
T ss_pred HHHHHHHH----hcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhccC
Confidence 47888888 899999999988876442 2 2222111111111124458999999999988443
No 372
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=32.34 E-value=9.6e+02 Score=28.84 Aligned_cols=307 Identities=15% Similarity=0.070 Sum_probs=0.0
Q ss_pred hhHhhhccCChHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcC--CCcccCHHHHHHHHHHHHHc-CCHHHHHHHHH
Q 005877 216 KGALRKSRGEDDEAFQILEYQAQK-----GNAGAMYKIGLFYYFGL--RGLRRDRTKALMWFSKAADK-GEPQSMEFLGE 287 (672)
Q Consensus 216 ~~~~~~~~g~~~~Ai~~~~~aa~~-----~~~~a~~~Lg~~y~~~~--~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~ 287 (672)
..........|+.|+..|++.... .--+|++.+|...+... .+.+.++++|+.-|++.-.. +-|--+..-+.
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKAL 560 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHH
Q ss_pred HHHcCCCCcCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC---------
Q 005877 288 IYARGAGVERNYTKALEWLTHAARQQ---------LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--------- 349 (672)
Q Consensus 288 ~y~~g~g~~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--------- 349 (672)
+|.. .+++++-++.|..|++.- .-...+.|-..... +...|+.+.--++..
T Consensus 561 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 629 (932)
T PRK13184 561 VYQR----LGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK-------HRREALVFMLLALWIAPEKISSRE 629 (932)
T ss_pred HHHH----hhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhCcccccchH
Q ss_pred ----------------------------------------CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHH
Q 005877 350 ----------------------------------------EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQK 389 (672)
Q Consensus 350 ----------------------------------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~ 389 (672)
+.+.....+=..... .++++.-.+.|--+++.|+.+
T Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 705 (932)
T PRK13184 630 EEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWD----LRDYRALADIFYVACDLGNWE 705 (932)
T ss_pred HHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhh----cccHHHHHHHHHHHHHhccHH
Q ss_pred HHHHHHHH-------------------------------HHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 005877 390 AFYQLAKM-------------------------------FHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKG 438 (672)
Q Consensus 390 a~~~L~~~-------------------------------y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g 438 (672)
....-... ... ..+++++...+.+.--..-.-+....+......+
T Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (932)
T PRK13184 706 FFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSN----KEDYEKAFKHLDNTDPTLILYAFDLFAIQALLDE 781 (932)
T ss_pred HHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHc----cccHHHHHhhhhhCCHHHHHHHHHHHHHHHHHhc
Q ss_pred CHHHHHHHHHHH-------HHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHH----HHHhCCCHHHH
Q 005877 439 DVGKAFLLYSRM-------AELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWW----QASEQGNEHAA 507 (672)
Q Consensus 439 ~~~~A~~~~~~a-------~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~----~a~~~~~~~a~ 507 (672)
+.+.-....+.. ....+....--.++++++ +.++|-+++. .....+...+.
T Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (932)
T PRK13184 782 EGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNR------------------DLKKAYKLLNRYPLDLLLDEYSEAF 843 (932)
T ss_pred cchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhc------------------cHHHHHHHHHhCChhhhccccchHH
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 005877 508 LLIGDAYYYGRGTQRDYERAAEAYMHAR-SQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQ 569 (672)
Q Consensus 508 ~~lG~~y~~g~g~~~d~~~A~~~~~~A~-~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 569 (672)
+-.|..+. ..++-+-|..+|.... +.--|.++.-...-+ .|...+...||+|
T Consensus 844 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 896 (932)
T PRK13184 844 VLYGCYLA----LTEDREAAKAHFSGCREDALFPRSLDGDIFDY------LGKISDNLSWWEK 896 (932)
T ss_pred HHHHHHHH----hcCchhHHHHHHhhccccccCcchhhccccch------hccccccccHHHH
No 373
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=32.30 E-value=4.4e+02 Score=26.50 Aligned_cols=108 Identities=13% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH-hCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHcCCCccC
Q 005877 336 YTKAKEYFEKAA-DNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--------AGHQKAFYQLAKMFHTGVGLKK 406 (672)
Q Consensus 336 ~~~A~~~~~~a~-~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--------~~~~~a~~~L~~~y~~g~g~~~ 406 (672)
.+++++-.+.-- +....+++.++|..|-+ ..|.+.+.+|..+..+ .+-.....+||.+|.. .+
T Consensus 98 lde~i~~~eedngE~e~~ea~~n~aeyY~q----i~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d----~~ 169 (412)
T COG5187 98 LDERIREKEEDNGETEGSEADRNIAEYYCQ----IMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGD----RK 169 (412)
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHH----HhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhcc----HH
Q ss_pred CHHHHHHHHHHHHHcC-ChhHHHHH----HHHHHhcCCHHHHHHHHHHHH
Q 005877 407 NLHMATALYKLVAERG-PWSSLSRW----ALESYLKGDVGKAFLLYSRMA 451 (672)
Q Consensus 407 ~~~~A~~~~~~a~~~~-~~~a~~~l----g~~~~~~g~~~~A~~~~~~a~ 451 (672)
=.++.++...-.++.| +|+--.++ |.......++.+|-..+...+
T Consensus 170 vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 170 VVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
No 374
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=32.24 E-value=99 Score=18.68 Aligned_cols=27 Identities=26% Similarity=0.270 Sum_probs=19.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877 428 SRWALESYLKGDVGKAFLLYSRMAELG 454 (672)
Q Consensus 428 ~~lg~~~~~~g~~~~A~~~~~~a~~~g 454 (672)
..+-..+.+.|++++|...|.+..+.|
T Consensus 4 n~li~~~~~~~~~~~a~~~~~~M~~~g 30 (35)
T TIGR00756 4 NTLIDGLCKAGRVEEALELFKEMLERG 30 (35)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 344556777888888888888876655
No 375
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.98 E-value=2.4e+02 Score=28.65 Aligned_cols=87 Identities=17% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHH--------HHHhCCC-HHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 005877 461 NAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWW--------QASEQGN-EHAALLIGDAYYYGRGTQRDYERAAEAY 531 (672)
Q Consensus 461 nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~--------~a~~~~~-~~a~~~lG~~y~~g~g~~~d~~~A~~~~ 531 (672)
.||.+|.+ .++++.|.+.+. ++.+.+- ...+.++|.+|. ..+|..+|..+.
T Consensus 108 ~LAsiYE~----------------Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyL----e~~d~veae~~i 167 (399)
T KOG1497|consen 108 HLASIYEK----------------EQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYL----EDDDKVEAEAYI 167 (399)
T ss_pred HHHHHHHH----------------hhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHH----hcCcHHHHHHHH
Q ss_pred HHH----HhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 005877 532 MHA----RSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYY 567 (672)
Q Consensus 532 ~~A----~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 567 (672)
.++ ++..|++-+..+-.+|..-.+..+.+-+|-+.|
T Consensus 168 nRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrY 207 (399)
T KOG1497|consen 168 NRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRY 207 (399)
T ss_pred HHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 376
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=31.41 E-value=1.2e+02 Score=23.39 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=14.1
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 005877 434 SYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 434 ~~~~g~~~~A~~~~~~a~~~ 453 (672)
.-..|++++|+.+|..+++.
T Consensus 16 ~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 16 EDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 34467888888888877653
No 377
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=30.79 E-value=3.7e+02 Score=35.13 Aligned_cols=161 Identities=14% Similarity=0.103 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-HHHHhhhhccCCCCc
Q 005877 124 PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELA-EIAVNSFLISKDSPV 202 (672)
Q Consensus 124 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~-~~~~~~~~~~~~~~~ 202 (672)
.+.+..++.+-.. .|.++.|..+.-.|.+.+-+++....|......|+-..|+...++.+ ...+.......+-|.
T Consensus 1670 ge~wLqsAriaR~----aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1670 GECWLQSARIARL----AGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred HHHHHHHHHHHHh----cccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Q ss_pred ccchhcccCchhhhhHhhhccCChHHHHHHHHH-----HHHcCCHHHHHHHHHHHHhcCCCcccCHHH----------HH
Q 005877 203 IEPIRIHNGAEENKGALRKSRGEDDEAFQILEY-----QAQKGNAGAMYKIGLFYYFGLRGLRRDRTK----------AL 267 (672)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~-----aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~----------A~ 267 (672)
....++...+..-.+......++ -+..+..+. ++.+...+.++.||..|..-......+..+ ++
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n-~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~ 1824 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGN-FESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAI 1824 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHH
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 005877 268 MWFSKAADKGEPQSMEFLGEIY 289 (672)
Q Consensus 268 ~~~~~a~~~~~~~a~~~Lg~~y 289 (672)
.+|.+++..|+...+-.+=.+.
T Consensus 1825 ~~~~~sl~yg~~~iyqsmPRll 1846 (2382)
T KOG0890|consen 1825 YFFGRALYYGNQHLYQSMPRLL 1846 (2382)
T ss_pred HHHHHHHHhcchhHHHhhhHHH
No 378
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=30.72 E-value=80 Score=33.02 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=33.7
Q ss_pred hHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-------CCC-CCCCHHHHHHHHHHHHhcCC
Q 005877 485 AERHQCAHSLWWQASEQGNEHAALLIGDAYYY-------GRG-TQRDYERAAEAYMHARSQSN 539 (672)
Q Consensus 485 ~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~-------g~g-~~~d~~~A~~~~~~A~~~~~ 539 (672)
.+-..+|++++++|....+|+.|++++.++.. .-- +..=|.+|...+++|-...+
T Consensus 331 ~~l~~~Al~yL~kA~d~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at~ 393 (404)
T PF12753_consen 331 QELIKKALEYLKKAQDEDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKATN 393 (404)
T ss_dssp HHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhhccCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhccc
Confidence 44578899999999988887766655555541 100 12236777777777765543
No 379
>PF13041 PPR_2: PPR repeat family
Probab=30.14 E-value=1e+02 Score=21.22 Aligned_cols=31 Identities=16% Similarity=0.343 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 005877 159 NIQSKMAVAYTYLRQDMHDKAVKLYAELAEI 189 (672)
Q Consensus 159 ~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~ 189 (672)
|...+..+-..|.+.|++++|.+.|++..+.
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3456777888899999999999999998764
No 380
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.11 E-value=5.8e+02 Score=25.62 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=22.9
Q ss_pred cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHH
Q 005877 276 KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHA 309 (672)
Q Consensus 276 ~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a 309 (672)
.|+|..+..+|..+.. .+++..|..+|-.+
T Consensus 124 ~G~p~lH~~la~~l~~----e~~~~~a~~HFll~ 153 (312)
T KOG3024|consen 124 YGHPELHALLADKLWT----EDNVEEARRHFLLS 153 (312)
T ss_pred CCCHHHHHHHHHHHHh----cccHHHHHhHhhhc
Confidence 4788888888888877 67888887777654
No 381
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=29.70 E-value=1.4e+02 Score=31.40 Aligned_cols=48 Identities=10% Similarity=-0.033 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC------------HHHHHHHHHHHHHcC
Q 005877 407 NLHMATALYKLVAERGPWSSLSRWALESYLKGD------------VGKAFLLYSRMAELG 454 (672)
Q Consensus 407 ~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~------------~~~A~~~~~~a~~~g 454 (672)
-..+|+.|+++|-....|..+..+|.++...|+ |.+|...+.+|-..+
T Consensus 333 l~~~Al~yL~kA~d~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at 392 (404)
T PF12753_consen 333 LIKKALEYLKKAQDEDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKAT 392 (404)
T ss_dssp HHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhccCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhcc
Confidence 456677777777666666666666665555553 556666666665554
No 382
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=27.89 E-value=2.9e+02 Score=24.83 Aligned_cols=69 Identities=10% Similarity=-0.064 Sum_probs=52.6
Q ss_pred hhhHHHHHHHHHH--HHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhCC-C-HHHHHHHHHHHhccCCHH
Q 005877 105 VRVMEEATSEVES--AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGG-N-IQSKMAVAYTYLRQDMHD 177 (672)
Q Consensus 105 ~~~~~~A~~~~~~--a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~~-~-~~a~~~Lg~~y~~~~~~~ 177 (672)
..+++++...+.. ...|+.++....-|.++.. .+++.+|+..++...+.+ + +-+.-.++.|+...+|.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~----rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIA----RGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHH----cCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 4566777777776 5678888999999999888 889999999999888743 3 666666777777777653
No 383
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=27.59 E-value=7.4e+02 Score=26.17 Aligned_cols=51 Identities=22% Similarity=0.232 Sum_probs=32.3
Q ss_pred cCCHHHHHHHHHHHHHc--CCH--HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC
Q 005877 296 ERNYTKALEWLTHAARQ--QLY--SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN 349 (672)
Q Consensus 296 ~~~~~~A~~~~~~a~~~--~~~--~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~ 349 (672)
..+|..|..++...... +.. ..+..|...|.. ++.-++.+|.+++++....
T Consensus 144 ~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~---WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 144 RYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDA---WDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred cCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHH---HHccCHHHHHHHHHHHHHH
Confidence 57777887777777663 222 234455555543 3455888888888887655
No 384
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=27.39 E-value=3.8e+02 Score=22.66 Aligned_cols=43 Identities=19% Similarity=0.182 Sum_probs=24.2
Q ss_pred HHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhc
Q 005877 527 AAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEV 573 (672)
Q Consensus 527 A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 573 (672)
++++|.+++.. ..+..++.||.-+. ....|+++..--++++..
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~----s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLG----SVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhh----hHHHHHHHHHHHHHHhcc
Confidence 45566666543 44566666666532 245566666666666554
No 385
>PRK10941 hypothetical protein; Provisional
Probab=27.39 E-value=5.1e+02 Score=25.88 Aligned_cols=66 Identities=14% Similarity=0.041 Sum_probs=56.5
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcch
Q 005877 507 ALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLP 580 (672)
Q Consensus 507 ~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~ 580 (672)
+.+|=.+|. ..+++++|..+.+..+. ++++.-.---|.+|.+ .+..+.|..=++.-++.-|+....
T Consensus 184 l~nLK~~~~----~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~q----L~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 184 LDTLKAALM----EEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQ----LDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHH----HcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHhCCCchhH
Confidence 447888888 89999999999999865 5788888888999998 899999999999999998886543
No 386
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=26.67 E-value=1e+02 Score=24.21 Aligned_cols=16 Identities=13% Similarity=-0.068 Sum_probs=10.0
Q ss_pred cCCHHHHHHHHHHHHh
Q 005877 141 ERNKGKAFLYHHFAAE 156 (672)
Q Consensus 141 ~~d~~~A~~~~~~A~~ 156 (672)
.++.+.|+.+|+++++
T Consensus 21 ~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 21 WGDKEQALAHYRKGLR 36 (79)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4566666666666654
No 387
>PF07589 VPEP: PEP-CTERM motif; InterPro: IPR013424 This entry describes a 25-residue region including an invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In most cases, this motif is found within nine residues of the C-terminal end of the protein. Proteins containing this motif typically have signal sequences at the N terminus [].
Probab=26.19 E-value=1e+02 Score=18.23 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005877 627 VTILTLFVCLLTVLYLRE 644 (672)
Q Consensus 627 ~~~~~~~~~~~~~~~~r~ 644 (672)
.++.++.++++++.+.||
T Consensus 6 st~~l~~~gl~~l~~~rr 23 (25)
T PF07589_consen 6 STLALLGLGLLGLAFARR 23 (25)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344455555555555333
No 388
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=25.87 E-value=1e+03 Score=27.01 Aligned_cols=105 Identities=14% Similarity=0.106 Sum_probs=54.7
Q ss_pred CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhCCC------HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhh
Q 005877 122 GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGN------IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFL 195 (672)
Q Consensus 122 ~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~------~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~ 195 (672)
|...--..++.+... .+.+.+|.+.|++.-..+. ..-++.++.-++..++.++-....++-++ +..
T Consensus 630 ge~P~~iLlA~~~Ay----~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~----WAr 701 (1081)
T KOG1538|consen 630 GETPNDLLLADVFAY----QGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRAD----WAR 701 (1081)
T ss_pred CCCchHHHHHHHHHh----hhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH----Hhh
Confidence 443344567777777 7889999998886432221 12234456666666666554333332221 111
Q ss_pred ccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 005877 196 ISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGL 250 (672)
Q Consensus 196 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~ 250 (672)
. ...|. --+.+....|+.++|+.+. ++.|=.+..+.+|.
T Consensus 702 ~-~kePk------------aAAEmLiSaGe~~KAi~i~---~d~gW~d~lidI~r 740 (1081)
T KOG1538|consen 702 N-IKEPK------------AAAEMLISAGEHVKAIEIC---GDHGWVDMLIDIAR 740 (1081)
T ss_pred h-cCCcH------------HHHHHhhcccchhhhhhhh---hcccHHHHHHHHHh
Confidence 1 11111 1234455777888887653 44444555555544
No 389
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=25.65 E-value=3.4e+02 Score=21.43 Aligned_cols=57 Identities=11% Similarity=0.014 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHH
Q 005877 427 LSRWALESYLKGDVGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWW 496 (672)
Q Consensus 427 ~~~lg~~~~~~g~~~~A~~~~~~a~~~g--~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 496 (672)
...-|.-+|...+.++|+..++++++.- .+....-+|++..-+.+ .+++++.+.+--
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e-------------~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHME-------------WGKYREMLAFAL 67 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHH
Confidence 3445666788999999999999998763 44444455555433211 566777666643
No 390
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=25.60 E-value=6.7e+02 Score=24.84 Aligned_cols=65 Identities=15% Similarity=0.145 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHhcCCCcc---cCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHH
Q 005877 241 NAGAMYKIGLFYYFGLRGLR---RDRTKALMWFSK-AADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHA 309 (672)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~---~~~~~A~~~~~~-a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a 309 (672)
+....-.|..++..-....+ .=.++|++|-+. .-+.|+|..+..+|.+|.+ .+++.+|..+|-.+
T Consensus 48 ~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~----e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 48 DEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWK----EGNYYEAERHFLLG 116 (260)
T ss_dssp SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHH----TT-HHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHh----hccHHHHHHHHHhc
Confidence 55555667766654421111 113456666511 1124899999999999998 88999988887654
No 391
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.89 E-value=1.7e+02 Score=24.06 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 005877 263 RTKALMWFSKAADKG---EPQSMEFLGEIYARGAGVERNYTKALEWLTH 308 (672)
Q Consensus 263 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 308 (672)
..+-.++++++-.++ -|..+-.||.+|.+ .++.+.|++-|+.
T Consensus 53 ~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~----~G~~e~a~~eFet 97 (121)
T COG4259 53 TAALEKYLEKIGAKNGAVPPGYHAHLGLLYSN----SGKDEQAVREFET 97 (121)
T ss_pred HHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhh----cCChHHHHHHHHH
Confidence 333344555543332 35677788888888 8888888887764
No 392
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=24.47 E-value=4.5e+02 Score=29.09 Aligned_cols=71 Identities=21% Similarity=0.167 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 005877 455 YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHA 534 (672)
Q Consensus 455 ~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A 534 (672)
++.|+-|||.+-+-... .+.+....-+.+|+..-+.--...+...+..+|-+|+ ..++|.+|+.++-.|
T Consensus 276 YPmALg~LadLeEi~pt-------~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~y----R~~~~~eA~~~Wa~a 344 (618)
T PF05053_consen 276 YPMALGNLADLEEIDPT-------PGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYY----RHKRYREALRSWAEA 344 (618)
T ss_dssp -HHHHHHHHHHHHHS---------TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHH----HTT-HHHHHHHHHHH
T ss_pred CchhhhhhHhHHhhccC-------CCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHH----HHHHHHHHHHHHHHH
Confidence 77888888887664211 1112222233444444333333445677888999999 889999999999988
Q ss_pred Hh
Q 005877 535 RS 536 (672)
Q Consensus 535 ~~ 536 (672)
++
T Consensus 345 a~ 346 (618)
T PF05053_consen 345 AD 346 (618)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 393
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=24.10 E-value=8.8e+02 Score=25.75 Aligned_cols=126 Identities=16% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCccCCHHHHHHHHHHH-----------HHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C
Q 005877 391 FYQLAKMFHTGVGLKKNLHMATALYKLV-----------AERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELG----Y 455 (672)
Q Consensus 391 ~~~L~~~y~~g~g~~~~~~~A~~~~~~a-----------~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g----~ 455 (672)
.+-|+.++.. .++++++|..+-... +..-....++.+...+...|+...-...+..-+..- +
T Consensus 128 ~~lLv~Lfl~---d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd 204 (493)
T KOG2581|consen 128 LYLLVLLFLI---DQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHD 204 (493)
T ss_pred HHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCc
Q ss_pred HHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC------HHHHHHHHHHHHhCCCCCCCHHHHHH
Q 005877 456 EVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN------EHAALLIGDAYYYGRGTQRDYERAAE 529 (672)
Q Consensus 456 ~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~------~~a~~~lG~~y~~g~g~~~d~~~A~~ 529 (672)
...+.-+-.++-+ ++++ .+-++.|-.+..++.-+.. +.-+|.+|.+.. .+.||..|.+
T Consensus 205 ~e~qavLiN~LLr-----~yL~-------n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIka----iqldYssA~~ 268 (493)
T KOG2581|consen 205 EEGQAVLINLLLR-----NYLH-------NKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKA----IQLDYSSALE 268 (493)
T ss_pred chhHHHHHHHHHH-----HHhh-------hHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHH----hhcchhHHHH
Q ss_pred HHHHHH
Q 005877 530 AYMHAR 535 (672)
Q Consensus 530 ~~~~A~ 535 (672)
++-+|+
T Consensus 269 ~~~qa~ 274 (493)
T KOG2581|consen 269 YFLQAL 274 (493)
T ss_pred HHHHHH
No 394
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=23.83 E-value=1.8e+02 Score=17.58 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877 427 LSRWALESYLKGDVGKAFLLYSRMAELG 454 (672)
Q Consensus 427 ~~~lg~~~~~~g~~~~A~~~~~~a~~~g 454 (672)
+..+-..+.+.|+++.|...+....+.|
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~g 31 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQG 31 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4455566777888888888888776654
No 395
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=23.57 E-value=3.6e+02 Score=24.20 Aligned_cols=62 Identities=11% Similarity=0.022 Sum_probs=44.2
Q ss_pred hHHHHHHHHH--HHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHc
Q 005877 487 RHQCAHSLWW--QASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEH 552 (672)
Q Consensus 487 ~~~~A~~~~~--~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~ 552 (672)
+++.+..++. +...|+.+....--||++. +.+++.+|++.++...+. ..+.+.--+++++.-
T Consensus 25 d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i----~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 25 DPYDAQAMLDALRVLRPNLKELDMFDGWLLI----ARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred CHHHHHHHHHHHHHhCCCccccchhHHHHHH----HcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 4555555555 4577888888888888888 888999999988887765 335555556666543
No 396
>PRK10941 hypothetical protein; Provisional
Probab=22.95 E-value=3.8e+02 Score=26.75 Aligned_cols=59 Identities=14% Similarity=0.021 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhH--HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 391 FYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSS--LSRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 391 ~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a--~~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
..+|-.+|.. .+++++|+.+.+..+...|.+. ....|.+|.+.|.+..|..-++..+++
T Consensus 184 l~nLK~~~~~----~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALME----EKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHH----cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3455666666 8999999999999998886554 556899999999999999988888765
No 397
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.65 E-value=2.3e+02 Score=23.36 Aligned_cols=27 Identities=15% Similarity=0.036 Sum_probs=20.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005877 423 PWSSLSRWALESYLKGDVGKAFLLYSR 449 (672)
Q Consensus 423 ~~~a~~~lg~~~~~~g~~~~A~~~~~~ 449 (672)
+|..+..||..|...|+.+.|+.-|+.
T Consensus 71 pPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 71 PPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred CCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 566777888888888888888877764
No 398
>TIGR02595 PEP_exosort PEP-CTERM putative exosortase interaction domain. This model describes a 25-residue domain that includes a near-invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In nearly every case, this motif is found within nine residues, and usually within five residues, of the extreme C-terminus of the protein. Proteins with this motif typically have signal sequences at the N-terminus. This region appears many times per genome or not at all, and co-occurs in genomes with a proposed protein-sorting integral membrane protein we designate exosortase (see TIGR02602). PEP-CTERM proteins frequently are poorly conserved, Ser/Thr-rich proteins and may become extensively modified proteinaceous constituents of extracellular material in bacterial biofilms.
Probab=22.47 E-value=1.1e+02 Score=18.17 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005877 627 VTILTLFVCLLTVLYLRE 644 (672)
Q Consensus 627 ~~~~~~~~~~~~~~~~r~ 644 (672)
.+++.+++++.++..+|+
T Consensus 5 stl~ll~~g~~~~~~rrr 22 (26)
T TIGR02595 5 STLLLLLLGLGFLLLRRR 22 (26)
T ss_pred hHHHHHHHHHHHHHHhhc
Confidence 445555555544444443
No 399
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=22.14 E-value=5.5e+02 Score=22.68 Aligned_cols=41 Identities=24% Similarity=0.265 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005877 277 GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGI 321 (672)
Q Consensus 277 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~L 321 (672)
.+|.....+|..|.. .++..++-+.+++|.+.|..+|..++
T Consensus 118 ~~p~~L~kia~Ay~k----lg~~r~~~ell~~ACekG~kEAC~nI 158 (161)
T PF09205_consen 118 INPEFLVKIANAYKK----LGNTREANELLKEACEKGLKEACRNI 158 (161)
T ss_dssp S-HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CCHHHHHHHHHHHHH----hcchhhHHHHHHHHHHhchHHHHHHh
Confidence 467777777777777 77777777777777777777766554
No 400
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.92 E-value=4.4e+02 Score=26.45 Aligned_cols=48 Identities=15% Similarity=0.187 Sum_probs=39.2
Q ss_pred hHhHHHHHHHHHH--HHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 005877 485 AERHQCAHSLWWQ--ASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS 536 (672)
Q Consensus 485 ~~~~~~A~~~~~~--a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~ 536 (672)
..-.+.|++|... .-+.|+|..+..||..+. ..+++.+|..+|-.+-+
T Consensus 106 ~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~----~e~~~~~a~~HFll~~d 155 (312)
T KOG3024|consen 106 KTFVRRAIKWSKEFGEGKYGHPELHALLADKLW----TEDNVEEARRHFLLSED 155 (312)
T ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH----hcccHHHHHhHhhhcCC
Confidence 3346778888776 456799999999999999 88899999999987643
No 401
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=21.46 E-value=15 Score=32.38 Aligned_cols=16 Identities=19% Similarity=-0.087 Sum_probs=9.9
Q ss_pred cCCHHHHHHHHHHHHh
Q 005877 141 ERNKGKAFLYHHFAAE 156 (672)
Q Consensus 141 ~~d~~~A~~~~~~A~~ 156 (672)
.+|..+|.++|.+++.
T Consensus 117 ~kd~~~a~k~Y~~av~ 132 (142)
T TIGR03042 117 LQDGPQAQKAYQKAAA 132 (142)
T ss_pred hcCHHHHHHHHHHHHH
Confidence 5566666666666543
No 402
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=21.27 E-value=5.4e+02 Score=22.19 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHcC--C--hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005877 410 MATALYKLVAERG--P--WSSLSRWALESYLKGDVGKAFLLYSRM 450 (672)
Q Consensus 410 ~A~~~~~~a~~~~--~--~~a~~~lg~~~~~~g~~~~A~~~~~~a 450 (672)
.+...|+.....+ . +..+...|..+...|++++|...|+++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 6666666665544 2 233445566677778888888777765
No 403
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.24 E-value=1.4e+03 Score=27.12 Aligned_cols=244 Identities=16% Similarity=0.090 Sum_probs=0.0
Q ss_pred hhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC
Q 005877 216 KGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGV 295 (672)
Q Consensus 216 ~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~ 295 (672)
+..+|...|+.++|++.+.+.++... .........+++-++|+++-......-.+-..-.+...
T Consensus 510 Li~LY~~kg~h~~AL~ll~~l~d~~~------------~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~---- 573 (877)
T KOG2063|consen 510 LIELYATKGMHEKALQLLRDLVDEDS------------DTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNK---- 573 (877)
T ss_pred HHHHHHhccchHHHHHHHHHHhcccc------------ccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhcc----
Q ss_pred cCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHcCCCchh
Q 005877 296 ERNYTKALEWLTH--AARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN---EEAGGHYNLGVMYYKGIGVKR 370 (672)
Q Consensus 296 ~~~~~~A~~~~~~--a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~ 370 (672)
+.+..++.|.. ..+.++...---++.+-.. ..+-++.|++.++.. +...-+..+...|.. .-
T Consensus 574 --~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~-------~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e----~v 640 (877)
T KOG2063|consen 574 --NPEAGIQIFTSEDKQEAESISRDDVLNYLKSK-------EPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE----KV 640 (877)
T ss_pred --CchhheeeeeccChhhhccCCHHHHHHHhhhh-------CcchhHHHHHHHhHhccccchHHHHHHHHHHHH----HH
Q ss_pred c--------HHHHHHH--HHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCH
Q 005877 371 D--------VKLACKY--FLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDV 440 (672)
Q Consensus 371 ~--------~~~A~~~--~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~ 440 (672)
+ -+++.+. .++....-.....|.-+..... .....-+...+..+.+.|+.
T Consensus 641 ~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~--------------------~~~~~l~ee~aill~rl~kh 700 (877)
T KOG2063|consen 641 LEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLER--------------------LNGDELYEERAILLGRLGKH 700 (877)
T ss_pred hhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhhh--------------------ccchhHHHHHHHHHhhhhhH
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhCC
Q 005877 441 GKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE--QGNEHAALLIGDAYYYGR 518 (672)
Q Consensus 441 ~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lG~~y~~g~ 518 (672)
++|+..|-.-+. +++.|..|...--+ .++...+..+=.+|.
T Consensus 701 e~aL~Iyv~~L~----------------------------------d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l--- 743 (877)
T KOG2063|consen 701 EEALHIYVHELD----------------------------------DIDAAESYCLPQYESDKTNKEIYLTLLRIYL--- 743 (877)
T ss_pred HHHHHHHHHHhc----------------------------------chhHHHHHHHHhccCCCcccHHHHHHHHHHh---
Q ss_pred CCC-CCHHHHHHHHHH-----HHhcCCHHHHHHH
Q 005877 519 GTQ-RDYERAAEAYMH-----ARSQSNAQAMFNL 546 (672)
Q Consensus 519 g~~-~d~~~A~~~~~~-----A~~~~~~~a~~~L 546 (672)
.. .|+.....+.-. +-+.+-..++..|
T Consensus 744 -~~~~d~~~~~~~il~~l~~h~~r~d~~~~~~~L 776 (877)
T KOG2063|consen 744 -NPIHDYKSGPLYILNFLQKHADRLDLAQVLKLL 776 (877)
T ss_pred -cchhhccccchhhhhHHHhhhhhcCHHHHHHhC
No 404
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.64 E-value=1.2e+03 Score=26.15 Aligned_cols=149 Identities=13% Similarity=0.030 Sum_probs=0.0
Q ss_pred cccCCCCCCcccccCCCCCCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhC-CChHHHHHHHHHhhcCCcccC
Q 005877 64 EENLDPGSWSPVFEPSIDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAME-GDPHARSVLGFLYGMGMMRER 142 (672)
Q Consensus 64 ~~~~~~~~a~~~~~~~~~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~G~g~~~ 142 (672)
...+|++.|..++.....+..+.+ -.+-+...+.++|.+. .+++-.+.|+.- .+
T Consensus 597 vmrrd~~~a~~vLp~I~k~~rt~v------------------a~Fle~~g~~e~AL~~s~D~d~rFelal~-------lg 651 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPKEIRTKV------------------AHFLESQGMKEQALELSTDPDQRFELALK-------LG 651 (794)
T ss_pred hhhccccccccccccCchhhhhhH------------------HhHhhhccchHhhhhcCCChhhhhhhhhh-------cC
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhc
Q 005877 143 NKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKS 222 (672)
Q Consensus 143 d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 222 (672)
+++.| +.-|.+.+++.=+-.||...+..+++..|.+++.++.+.. .+-.++..
T Consensus 652 rl~iA---~~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~------------------------~LlLl~t~ 704 (794)
T KOG0276|consen 652 RLDIA---FDLAVEANSEVKWRQLGDAALSAGELPLASECFLRARDLG------------------------SLLLLYTS 704 (794)
T ss_pred cHHHH---HHHHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcchh------------------------hhhhhhhh
Q ss_pred cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHH
Q 005877 223 RGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSK 272 (672)
Q Consensus 223 ~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~ 272 (672)
.|+-+--...-..+.+.|.-..-+.--.+. +++++..+.+.+
T Consensus 705 ~g~~~~l~~la~~~~~~g~~N~AF~~~~l~--------g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 705 SGNAEGLAVLASLAKKQGKNNLAFLAYFLS--------GDYEECLELLIS 746 (794)
T ss_pred cCChhHHHHHHHHHHhhcccchHHHHHHHc--------CCHHHHHHHHHh
No 405
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=20.59 E-value=1.3e+02 Score=23.26 Aligned_cols=16 Identities=19% Similarity=0.032 Sum_probs=10.1
Q ss_pred cCCHHHHHHHHHHHHh
Q 005877 141 ERNKGKAFLYHHFAAE 156 (672)
Q Consensus 141 ~~d~~~A~~~~~~A~~ 156 (672)
.+++++|+.+|..+++
T Consensus 21 ~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 21 AGDYEEALELYKKAIE 36 (77)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4566666666666655
No 406
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=20.52 E-value=4.8e+02 Score=25.57 Aligned_cols=74 Identities=15% Similarity=-0.030 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhC-CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC----C----CHHHHHHHHHHHhccCCHHHH
Q 005877 109 EEATSEVESAAME-GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG----G----NIQSKMAVAYTYLRQDMHDKA 179 (672)
Q Consensus 109 ~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~----~~~a~~~Lg~~y~~~~~~~~A 179 (672)
.+|...|++.-.. --......+|.-|.. .+|+++|..+|+.+... | ....+..|-.++...|+.+..
T Consensus 162 ~~A~~~f~~~~~~R~~~~l~~~~A~ey~~----~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~ 237 (247)
T PF11817_consen 162 EKAYEQFKKYGQNRMASYLSLEMAEEYFR----LGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDY 237 (247)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 4566666552222 224455688888888 89999999999998642 2 135566778888888988888
Q ss_pred HHHHHHH
Q 005877 180 VKLYAEL 186 (672)
Q Consensus 180 ~~~y~~a 186 (672)
+.+--++
T Consensus 238 l~~~leL 244 (247)
T PF11817_consen 238 LTTSLEL 244 (247)
T ss_pred HHHHHHH
Confidence 7765554
No 407
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=20.50 E-value=1.3e+03 Score=26.26 Aligned_cols=45 Identities=13% Similarity=-0.066 Sum_probs=25.3
Q ss_pred cCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005877 405 KKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRM 450 (672)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 450 (672)
.++.++|..+-++--+.- +..++..|.-+-+..++++|.+.|-+|
T Consensus 786 ~~~W~eAFalAe~hPe~~-~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 786 TQRWDEAFALAEKHPEFK-DDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred cccchHhHhhhhhCcccc-ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 566666665544322221 234555566566666777777766654
No 408
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.50 E-value=8.6e+02 Score=24.24 Aligned_cols=103 Identities=15% Similarity=0.154 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH---HHHcCCHHH-H---HHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHH
Q 005877 426 SLSRWALESYLKGDVGKAFLLYSR---MAELGYEVA-Q---SNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQA 498 (672)
Q Consensus 426 a~~~lg~~~~~~g~~~~A~~~~~~---a~~~g~~~a-~---~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 498 (672)
....+|..|+..|+|.+-...+++ +++..+..- + ..+--+|.- +-.+...+++-.+-..+|+++
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAl---------EIQmYT~qKnNKkLK~lYeqa 217 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYAL---------EIQMYTEQKNNKKLKALYEQA 217 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhh---------HhhhhhhhcccHHHHHHHHHH
Confidence 456788888888877665555444 333321110 0 000001100 001111244444445567776
Q ss_pred HhCCCHHHH-HHHHHHHHhCCC---CCCCHHHHHHHHHHHHhc
Q 005877 499 SEQGNEHAA-LLIGDAYYYGRG---TQRDYERAAEAYMHARSQ 537 (672)
Q Consensus 499 ~~~~~~~a~-~~lG~~y~~g~g---~~~d~~~A~~~~~~A~~~ 537 (672)
+.-..+-.+ .-+|.+-.-|.- ..+.+.+|-.-|-.|-+.
T Consensus 218 lhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 218 LHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred HHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 554332211 134554442210 467888888877777653
No 409
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=20.15 E-value=62 Score=19.19 Aligned_cols=18 Identities=39% Similarity=0.558 Sum_probs=10.8
Q ss_pred CCCCCCchhHHHHHHHHh
Q 005877 1 MPELTSTPKLIICLLILS 18 (672)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (672)
||.+...++++++++.++
T Consensus 1 M~~~~mmKkil~~l~a~~ 18 (25)
T PF08139_consen 1 MPSLSMMKKILFPLLALF 18 (25)
T ss_pred CchHHHHHHHHHHHHHHH
Confidence 455566677776655444
Done!