Query 005877
Match_columns 672
No_of_seqs 474 out of 3296
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 09:51:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005877.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005877hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xm6_A Protein corresponding t 100.0 1.9E-50 6.6E-55 444.3 55.7 404 108-576 23-435 (490)
2 2xm6_A Protein corresponding t 100.0 1.6E-49 5.4E-54 437.0 47.2 429 73-570 27-468 (490)
3 3e4b_A ALGK; tetratricopeptide 100.0 6.4E-43 2.2E-47 379.4 28.3 331 227-576 55-390 (452)
4 3e4b_A ALGK; tetratricopeptide 100.0 2.5E-41 8.5E-46 366.9 30.8 403 89-573 7-421 (452)
5 1w3b_A UDP-N-acetylglucosamine 100.0 5.3E-30 1.8E-34 272.2 46.8 354 105-552 12-385 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 4.1E-29 1.4E-33 265.3 45.5 350 130-577 5-372 (388)
7 1ouv_A Conserved hypothetical 100.0 1.7E-29 5.7E-34 254.8 34.5 260 238-551 2-265 (273)
8 1ouv_A Conserved hypothetical 100.0 2.6E-29 9E-34 253.3 34.9 257 120-432 2-262 (273)
9 2xpi_A Anaphase-promoting comp 100.0 1.8E-28 6E-33 275.6 41.9 429 105-578 97-584 (597)
10 2xpi_A Anaphase-promoting comp 100.0 2.8E-28 9.5E-33 274.0 33.9 434 65-551 96-595 (597)
11 2gw1_A Mitochondrial precursor 100.0 1.2E-26 4.1E-31 255.1 38.1 393 124-577 6-482 (514)
12 3rjv_A Putative SEL1 repeat pr 100.0 6.8E-27 2.3E-31 226.4 24.2 199 227-432 3-208 (212)
13 3rjv_A Putative SEL1 repeat pr 100.0 1E-26 3.5E-31 225.1 23.6 200 145-397 3-209 (212)
14 2gw1_A Mitochondrial precursor 100.0 4.3E-25 1.5E-29 242.7 39.8 411 85-549 6-492 (514)
15 3fp2_A TPR repeat-containing p 99.9 1.4E-25 4.7E-30 248.4 34.1 422 84-578 24-496 (537)
16 3fp2_A TPR repeat-containing p 99.9 1.9E-24 6.4E-29 239.3 38.6 427 56-537 28-491 (537)
17 4g1t_A Interferon-induced prot 99.9 2.9E-25 9.9E-30 241.9 31.3 309 122-453 49-401 (472)
18 2y4t_A DNAJ homolog subfamily 99.9 1.4E-23 4.9E-28 226.8 39.0 355 110-578 10-415 (450)
19 4g1t_A Interferon-induced prot 99.9 5.6E-24 1.9E-28 231.7 30.4 372 159-577 50-463 (472)
20 3ieg_A DNAJ homolog subfamily 99.9 3.5E-22 1.2E-26 208.1 41.3 312 123-578 2-340 (359)
21 2y4t_A DNAJ homolog subfamily 99.9 2.5E-22 8.6E-27 217.0 38.8 321 80-466 21-373 (450)
22 3ieg_A DNAJ homolog subfamily 99.9 3.3E-22 1.1E-26 208.3 37.6 284 241-591 2-318 (359)
23 3hym_B Cell division cycle pro 99.9 1.6E-20 5.4E-25 193.3 31.5 274 122-468 20-316 (330)
24 3hym_B Cell division cycle pro 99.9 1.5E-20 5E-25 193.6 31.1 272 239-552 19-316 (330)
25 1fch_A Peroxisomal targeting s 99.9 1.2E-20 4.3E-25 197.7 22.6 270 262-573 40-359 (368)
26 1fch_A Peroxisomal targeting s 99.8 2.5E-19 8.6E-24 187.8 28.1 292 64-421 36-359 (368)
27 4eqf_A PEX5-related protein; a 99.8 2.5E-19 8.4E-24 188.0 24.4 252 125-450 66-353 (365)
28 1klx_A Cysteine rich protein B 99.8 4.9E-20 1.7E-24 164.7 15.1 133 257-396 5-137 (138)
29 4eqf_A PEX5-related protein; a 99.8 1.6E-18 5.4E-23 181.9 29.1 263 84-417 64-352 (365)
30 1klx_A Cysteine rich protein B 99.8 8.2E-20 2.8E-24 163.3 14.6 136 290-432 2-137 (138)
31 3cv0_A Peroxisome targeting si 99.8 1.8E-18 6.2E-23 177.6 25.4 144 296-452 151-314 (327)
32 3cv0_A Peroxisome targeting si 99.8 1.1E-17 3.9E-22 171.7 28.9 232 84-347 20-267 (327)
33 4a1s_A PINS, partner of inscut 99.8 8.7E-18 3E-22 179.0 26.6 266 125-458 49-377 (411)
34 2pl2_A Hypothetical conserved 99.8 6.9E-18 2.4E-22 163.5 22.7 197 121-382 2-211 (217)
35 3sf4_A G-protein-signaling mod 99.8 1.7E-17 5.9E-22 175.9 26.7 281 123-471 8-362 (406)
36 4a1s_A PINS, partner of inscut 99.8 1.7E-17 5.8E-22 176.8 26.4 268 241-578 47-377 (411)
37 3sf4_A G-protein-signaling mod 99.8 7.9E-18 2.7E-22 178.5 23.7 270 241-552 8-359 (406)
38 3u4t_A TPR repeat-containing p 99.8 1.3E-17 4.3E-22 166.9 23.9 237 159-466 2-265 (272)
39 3u4t_A TPR repeat-containing p 99.8 8.1E-18 2.8E-22 168.3 22.3 227 280-578 4-255 (272)
40 2pl2_A Hypothetical conserved 99.8 1.3E-17 4.3E-22 161.6 22.1 158 239-418 36-211 (217)
41 1xi4_A Clathrin heavy chain; a 99.8 1.6E-15 5.5E-20 174.7 41.4 363 105-564 998-1375(1630)
42 3uq3_A Heat shock protein STI1 99.8 5.5E-17 1.9E-21 160.4 25.4 220 279-575 5-238 (258)
43 3mkr_A Coatomer subunit epsilo 99.8 7.8E-17 2.7E-21 163.5 26.9 245 262-579 14-270 (291)
44 3ro2_A PINS homolog, G-protein 99.8 1.2E-16 4E-21 164.1 27.3 262 125-454 6-333 (338)
45 3ro2_A PINS homolog, G-protein 99.8 7E-17 2.4E-21 165.8 25.3 254 282-576 8-335 (338)
46 1xi4_A Clathrin heavy chain; a 99.8 5.2E-15 1.8E-19 170.5 42.5 356 121-575 982-1347(1630)
47 2h6f_A Protein farnesyltransfe 99.8 4E-17 1.4E-21 171.5 23.5 174 277-467 95-285 (382)
48 3uq3_A Heat shock protein STI1 99.8 2.3E-16 7.9E-21 155.8 27.4 218 160-454 5-237 (258)
49 2h6f_A Protein farnesyltransfe 99.8 3.6E-17 1.2E-21 171.9 22.4 236 122-425 95-352 (382)
50 2ooe_A Cleavage stimulation fa 99.7 4.4E-15 1.5E-19 164.1 37.7 407 119-576 8-495 (530)
51 3mkr_A Coatomer subunit epsilo 99.7 3.2E-16 1.1E-20 158.9 24.6 206 219-447 74-288 (291)
52 3ulq_A Response regulator aspa 99.7 2.9E-16 1E-20 165.9 24.1 219 321-576 109-371 (383)
53 3vtx_A MAMA; tetratricopeptide 99.7 3.8E-16 1.3E-20 146.5 20.4 139 239-395 36-180 (184)
54 3ulq_A Response regulator aspa 99.7 4.9E-16 1.7E-20 164.2 22.8 223 281-537 105-368 (383)
55 1xnf_A Lipoprotein NLPI; TPR, 99.7 5.5E-16 1.9E-20 155.0 20.8 183 241-447 76-269 (275)
56 2ooe_A Cleavage stimulation fa 99.7 1E-13 3.5E-18 153.1 40.5 383 151-577 2-458 (530)
57 3vtx_A MAMA; tetratricopeptide 99.7 1.2E-15 4.2E-20 143.0 21.2 169 278-463 4-180 (184)
58 1xnf_A Lipoprotein NLPI; TPR, 99.7 2.8E-15 9.7E-20 149.7 24.0 214 334-580 19-251 (275)
59 3q15_A PSP28, response regulat 99.7 2.6E-15 8.8E-20 158.4 23.4 156 281-453 103-290 (378)
60 4abn_A Tetratricopeptide repea 99.7 5.7E-15 2E-19 160.6 23.3 204 225-450 83-318 (474)
61 4abn_A Tetratricopeptide repea 99.7 7E-15 2.4E-19 159.9 23.5 202 262-496 83-316 (474)
62 2ho1_A Type 4 fimbrial biogene 99.7 1.6E-14 5.3E-19 142.5 24.1 195 352-578 37-243 (252)
63 3q15_A PSP28, response regulat 99.7 6.9E-15 2.4E-19 155.1 22.2 228 162-453 103-365 (378)
64 2q7f_A YRRB protein; TPR, prot 99.6 6.7E-15 2.3E-19 144.0 20.4 204 124-397 23-236 (243)
65 2q7f_A YRRB protein; TPR, prot 99.6 5.4E-15 1.9E-19 144.7 18.9 196 316-578 24-227 (243)
66 2ho1_A Type 4 fimbrial biogene 99.6 5.4E-14 1.8E-18 138.6 26.1 192 124-385 37-238 (252)
67 2vq2_A PILW, putative fimbrial 99.6 1E-13 3.4E-18 133.6 26.2 144 262-422 57-212 (225)
68 2vq2_A PILW, putative fimbrial 99.6 8E-14 2.8E-18 134.3 25.3 197 315-578 8-216 (225)
69 4i17_A Hypothetical protein; T 99.6 1.7E-13 5.7E-18 133.3 26.5 203 121-398 4-224 (228)
70 4i17_A Hypothetical protein; T 99.6 1E-13 3.4E-18 134.8 24.1 127 314-453 6-146 (228)
71 4gyw_A UDP-N-acetylglucosamine 99.6 1.3E-14 4.3E-19 164.4 20.2 165 119-349 4-174 (723)
72 3nf1_A KLC 1, kinesin light ch 99.6 1.5E-14 5.1E-19 147.0 17.4 238 158-453 25-307 (311)
73 4gyw_A UDP-N-acetylglucosamine 99.6 1.9E-14 6.7E-19 162.9 19.7 161 276-453 6-174 (723)
74 3nf1_A KLC 1, kinesin light ch 99.6 1.4E-14 4.8E-19 147.2 16.8 228 316-576 28-310 (311)
75 1hz4_A MALT regulatory protein 99.6 6.3E-13 2.2E-17 139.5 27.0 255 280-575 15-324 (373)
76 1qqe_A Vesicular transport pro 99.6 6.2E-14 2.1E-18 142.2 17.7 204 298-576 32-272 (292)
77 1hz4_A MALT regulatory protein 99.6 3.1E-12 1.1E-16 134.2 31.1 261 125-453 15-322 (373)
78 1qqe_A Vesicular transport pro 99.5 2.4E-13 8E-18 137.9 20.5 164 262-454 32-229 (292)
79 1b89_A Protein (clathrin heavy 99.5 5.8E-14 2E-18 146.4 15.3 283 105-449 16-307 (449)
80 2ond_A Cleavage stimulation fa 99.5 1.2E-12 4.1E-17 133.7 23.7 215 337-578 33-275 (308)
81 3edt_B KLC 2, kinesin light ch 99.5 1.9E-13 6.4E-18 136.5 17.2 145 296-453 14-198 (283)
82 3urz_A Uncharacterized protein 99.5 4E-13 1.4E-17 128.8 17.6 182 351-578 3-191 (208)
83 3qky_A Outer membrane assembly 99.5 1.8E-12 6E-17 128.9 22.9 188 348-578 11-229 (261)
84 3edt_B KLC 2, kinesin light ch 99.5 2.6E-13 9E-18 135.4 16.8 215 221-453 12-281 (283)
85 1b89_A Protein (clathrin heavy 99.5 5.3E-14 1.8E-18 146.7 10.2 279 215-551 37-339 (449)
86 2ond_A Cleavage stimulation fa 99.5 8.7E-12 3E-16 127.3 25.7 211 145-423 33-272 (308)
87 3qky_A Outer membrane assembly 99.5 1.3E-12 4.4E-17 129.9 17.1 174 237-423 10-226 (261)
88 3urz_A Uncharacterized protein 99.4 1.4E-12 4.9E-17 124.9 15.8 161 86-312 5-186 (208)
89 3as5_A MAMA; tetratricopeptide 99.4 4.1E-12 1.4E-16 117.9 18.6 165 353-579 9-179 (186)
90 2pzi_A Probable serine/threoni 99.4 1.5E-12 5E-17 148.0 17.1 176 119-364 389-580 (681)
91 2ifu_A Gamma-SNAP; membrane fu 99.4 1.5E-11 5E-16 125.6 20.8 191 172-423 3-225 (307)
92 2pzi_A Probable serine/threoni 99.4 1.7E-12 6E-17 147.4 14.8 176 80-327 389-580 (681)
93 3as5_A MAMA; tetratricopeptide 99.4 2.5E-11 8.4E-16 112.6 19.7 158 279-453 8-173 (186)
94 2yhc_A BAMD, UPF0169 lipoprote 99.4 3.8E-11 1.3E-15 116.4 21.1 194 315-577 4-217 (225)
95 4ga2_A E3 SUMO-protein ligase 99.4 1.7E-12 5.7E-17 117.4 10.5 96 296-400 10-111 (150)
96 4ga2_A E3 SUMO-protein ligase 99.4 1.9E-12 6.4E-17 117.1 10.7 136 320-468 2-146 (150)
97 2ifu_A Gamma-SNAP; membrane fu 99.3 6E-11 2.1E-15 121.0 21.2 99 334-453 30-144 (307)
98 2yhc_A BAMD, UPF0169 lipoprote 99.3 2.5E-10 8.5E-15 110.6 19.1 178 241-454 3-214 (225)
99 4gco_A Protein STI-1; structur 99.2 1.4E-10 4.8E-15 101.2 13.5 112 121-289 10-125 (126)
100 2r5s_A Uncharacterized protein 99.2 5E-11 1.7E-15 110.7 11.2 59 125-187 7-67 (176)
101 2vsy_A XCC0866; transferase, g 99.2 2E-10 6.8E-15 127.8 17.8 153 370-577 3-161 (568)
102 3dra_A Protein farnesyltransfe 99.2 3.2E-09 1.1E-13 107.1 24.3 220 335-576 48-291 (306)
103 4gco_A Protein STI-1; structur 99.2 3E-10 1E-14 99.1 14.6 107 351-465 12-124 (126)
104 2r5s_A Uncharacterized protein 99.2 2.8E-10 9.5E-15 105.6 14.9 161 83-311 4-172 (176)
105 2qfc_A PLCR protein; TPR, HTH, 99.2 3.9E-10 1.3E-14 114.0 17.1 62 505-574 197-267 (293)
106 3qou_A Protein YBBN; thioredox 99.2 2.4E-10 8.3E-15 115.2 14.7 163 120-311 113-283 (287)
107 2vsy_A XCC0866; transferase, g 99.2 4.7E-10 1.6E-14 124.8 18.4 147 106-313 3-158 (568)
108 2qfc_A PLCR protein; TPR, HTH, 99.2 7E-10 2.4E-14 112.1 17.9 157 280-453 76-266 (293)
109 1hh8_A P67PHOX, NCF-2, neutrop 99.2 8.5E-10 2.9E-14 105.3 16.9 128 427-579 9-156 (213)
110 3gyz_A Chaperone protein IPGC; 99.1 1.6E-10 5.6E-15 104.1 10.7 71 500-578 66-138 (151)
111 3qou_A Protein YBBN; thioredox 99.1 1.1E-09 3.7E-14 110.4 18.1 160 276-452 114-283 (287)
112 2fo7_A Synthetic consensus TPR 99.1 2.8E-09 9.7E-14 92.5 18.2 127 426-576 3-135 (136)
113 3u3w_A Transcriptional activat 99.1 2.9E-09 9.9E-14 107.6 20.2 162 357-573 80-266 (293)
114 4f3v_A ESX-1 secretion system 99.1 3.2E-10 1.1E-14 111.8 12.2 179 369-576 19-240 (282)
115 3u3w_A Transcriptional activat 99.1 3E-09 1E-13 107.4 19.0 151 286-453 82-266 (293)
116 1hh8_A P67PHOX, NCF-2, neutrop 99.1 2.1E-09 7.3E-14 102.5 16.4 126 316-455 7-152 (213)
117 3gyz_A Chaperone protein IPGC; 99.1 1.5E-09 5E-14 97.8 12.9 97 351-455 35-135 (151)
118 4f3v_A ESX-1 secretion system 99.1 5.8E-10 2E-14 110.0 10.8 196 141-385 19-237 (282)
119 4gcn_A Protein STI-1; structur 99.0 2.1E-09 7.2E-14 93.7 12.6 98 426-577 10-116 (127)
120 2vgx_A Chaperone SYCD; alterna 99.0 7.2E-10 2.5E-14 99.7 9.9 111 413-577 8-122 (148)
121 2fo7_A Synthetic consensus TPR 99.0 1.2E-08 4.2E-13 88.4 17.6 110 335-452 16-131 (136)
122 3dra_A Protein farnesyltransfe 99.0 6.4E-08 2.2E-12 97.5 24.4 231 261-537 30-287 (306)
123 1p5q_A FKBP52, FK506-binding p 99.0 7.5E-10 2.6E-14 114.3 10.1 146 105-311 126-293 (336)
124 2c2l_A CHIP, carboxy terminus 99.0 3.8E-09 1.3E-13 106.1 14.3 190 351-576 3-202 (281)
125 4gcn_A Protein STI-1; structur 99.0 9.1E-09 3.1E-13 89.7 14.1 93 353-453 9-112 (127)
126 1p5q_A FKBP52, FK506-binding p 99.0 8.1E-10 2.8E-14 114.1 8.0 143 406-572 127-293 (336)
127 3gw4_A Uncharacterized protein 99.0 7.2E-09 2.5E-13 97.7 14.0 157 369-581 5-184 (203)
128 3gw4_A Uncharacterized protein 99.0 9.4E-09 3.2E-13 96.9 14.7 145 222-384 4-175 (203)
129 1a17_A Serine/threonine protei 98.9 3E-08 1E-12 90.0 17.2 126 124-310 13-144 (166)
130 3dss_A Geranylgeranyl transfer 98.9 7.4E-07 2.5E-11 90.3 28.4 230 337-577 47-308 (331)
131 1a17_A Serine/threonine protei 98.9 2.8E-08 9.5E-13 90.1 16.1 125 315-452 13-145 (166)
132 2vgx_A Chaperone SYCD; alterna 98.9 6.4E-09 2.2E-13 93.4 11.4 105 341-453 8-118 (148)
133 4b4t_Q 26S proteasome regulato 98.9 3.3E-08 1.1E-12 105.5 18.7 190 242-453 4-245 (434)
134 2e2e_A Formate-dependent nitri 98.9 1.9E-08 6.7E-13 92.8 14.3 120 405-578 23-149 (177)
135 2c2l_A CHIP, carboxy terminus 98.9 1.1E-08 3.8E-13 102.6 13.1 99 84-193 3-105 (281)
136 4b4t_Q 26S proteasome regulato 98.9 2.3E-08 7.9E-13 106.6 16.2 210 159-421 3-245 (434)
137 3upv_A Heat shock protein STI1 98.9 5.8E-08 2E-12 84.0 15.4 94 352-453 4-101 (126)
138 3upv_A Heat shock protein STI1 98.9 2.8E-08 9.6E-13 86.0 13.2 95 124-275 4-100 (126)
139 4e6h_A MRNA 3'-END-processing 98.9 3.1E-05 1E-09 86.7 40.7 192 372-592 325-550 (679)
140 2lni_A Stress-induced-phosphop 98.9 4.3E-08 1.5E-12 85.1 14.2 63 122-188 14-78 (133)
141 2xcb_A PCRH, regulatory protei 98.8 1.5E-08 5E-13 90.1 11.2 102 80-192 13-118 (142)
142 3sz7_A HSC70 cochaperone (SGT) 98.8 5.6E-08 1.9E-12 88.6 15.1 101 425-579 12-114 (164)
143 2vyi_A SGTA protein; chaperone 98.8 5.3E-08 1.8E-12 83.9 13.3 62 123-188 11-74 (131)
144 2e2e_A Formate-dependent nitri 98.8 3.8E-08 1.3E-12 90.8 13.0 79 105-187 23-108 (177)
145 2lni_A Stress-induced-phosphop 98.8 9.7E-08 3.3E-12 82.8 14.9 80 335-422 31-114 (133)
146 1hxi_A PEX5, peroxisome target 98.8 2.6E-08 9.1E-13 85.8 11.0 97 427-577 20-118 (121)
147 2xcb_A PCRH, regulatory protei 98.8 3.3E-08 1.1E-12 87.8 11.9 104 342-453 6-115 (142)
148 2fbn_A 70 kDa peptidylprolyl i 98.8 1.2E-08 4E-13 96.4 9.5 121 122-303 36-176 (198)
149 2fbn_A 70 kDa peptidylprolyl i 98.8 9.1E-09 3.1E-13 97.2 8.3 136 296-444 17-176 (198)
150 3sz7_A HSC70 cochaperone (SGT) 98.8 1E-07 3.5E-12 86.8 14.6 94 352-453 11-108 (164)
151 3mv2_B Coatomer subunit epsilo 98.8 3.2E-07 1.1E-11 91.6 19.1 174 339-579 85-288 (310)
152 3ro3_A PINS homolog, G-protein 98.8 6.8E-08 2.3E-12 86.7 13.1 91 280-383 10-116 (164)
153 3ro3_A PINS homolog, G-protein 98.8 7.1E-08 2.4E-12 86.5 13.3 126 315-453 9-158 (164)
154 4e6h_A MRNA 3'-END-processing 98.8 5.4E-05 1.8E-09 84.7 39.0 420 111-578 51-575 (679)
155 1kt0_A FKBP51, 51 kDa FK506-bi 98.7 1.4E-08 4.8E-13 109.4 8.8 137 106-303 248-405 (457)
156 1elw_A TPR1-domain of HOP; HOP 98.7 2.8E-07 9.5E-12 77.7 15.3 110 123-289 3-116 (118)
157 2hr2_A Hypothetical protein; a 98.7 5.1E-08 1.8E-12 87.0 10.8 111 425-577 12-135 (159)
158 1na0_A Designed protein CTPR3; 98.7 3.5E-07 1.2E-11 77.9 16.0 61 124-188 9-71 (125)
159 3rkv_A Putative peptidylprolyl 98.7 1.1E-07 3.7E-12 86.5 12.8 119 424-578 11-131 (162)
160 3dss_A Geranylgeranyl transfer 98.7 1.7E-05 5.8E-10 80.3 29.9 226 222-456 41-307 (331)
161 1hxi_A PEX5, peroxisome target 98.7 8.4E-08 2.9E-12 82.6 11.1 96 86-192 18-117 (121)
162 2vyi_A SGTA protein; chaperone 98.7 5.5E-07 1.9E-11 77.4 16.3 109 352-468 12-126 (131)
163 2xev_A YBGF; tetratricopeptide 98.7 1.6E-07 5.6E-12 81.2 12.6 66 505-578 40-110 (129)
164 1elw_A TPR1-domain of HOP; HOP 98.7 3.8E-07 1.3E-11 76.9 14.6 106 352-465 4-115 (118)
165 1na0_A Designed protein CTPR3; 98.7 6.8E-07 2.3E-11 76.1 16.2 108 352-467 9-122 (125)
166 2kck_A TPR repeat; tetratricop 98.7 2.1E-07 7.3E-12 77.7 12.3 100 424-577 6-110 (112)
167 3mv2_B Coatomer subunit epsilo 98.7 1.5E-06 5E-11 86.8 20.2 212 221-453 24-282 (310)
168 2if4_A ATFKBP42; FKBP-like, al 98.7 5.3E-08 1.8E-12 100.4 9.7 151 387-577 178-332 (338)
169 2hr2_A Hypothetical protein; a 98.7 1.6E-07 5.4E-12 83.9 11.3 95 352-454 11-132 (159)
170 1elr_A TPR2A-domain of HOP; HO 98.7 3.8E-07 1.3E-11 78.6 13.7 67 502-576 36-111 (131)
171 3q7a_A Farnesyltransferase alp 98.7 2.3E-06 7.7E-11 87.2 21.3 222 335-576 69-335 (349)
172 3q49_B STIP1 homology and U bo 98.6 3E-07 1E-11 80.4 12.8 100 82-192 6-109 (137)
173 3q49_B STIP1 homology and U bo 98.6 4.6E-07 1.6E-11 79.2 13.9 96 350-453 7-106 (137)
174 3rkv_A Putative peptidylprolyl 98.6 4.1E-07 1.4E-11 82.6 13.9 76 387-466 62-142 (162)
175 2dba_A Smooth muscle cell asso 98.6 8.5E-07 2.9E-11 78.4 15.8 62 123-188 27-93 (148)
176 3q7a_A Farnesyltransferase alp 98.6 3E-06 1E-10 86.3 21.4 243 262-539 52-333 (349)
177 1elr_A TPR2A-domain of HOP; HO 98.6 6.5E-07 2.2E-11 77.0 14.2 106 353-466 5-122 (131)
178 2xev_A YBGF; tetratricopeptide 98.6 3.6E-07 1.2E-11 79.0 12.2 96 85-191 2-107 (129)
179 2dba_A Smooth muscle cell asso 98.6 1.2E-06 4.2E-11 77.3 15.7 109 350-466 26-143 (148)
180 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 8.5E-07 2.9E-11 95.4 16.8 132 297-441 248-402 (457)
181 2kck_A TPR repeat; tetratricop 98.5 4.7E-07 1.6E-11 75.6 10.7 98 81-189 2-106 (112)
182 1ihg_A Cyclophilin 40; ppiase 98.5 1E-06 3.6E-11 91.8 15.6 127 315-468 223-353 (370)
183 1wao_1 Serine/threonine protei 98.5 2.9E-08 9.9E-13 107.5 3.7 123 430-576 12-153 (477)
184 1ihg_A Cyclophilin 40; ppiase 98.5 1.1E-06 3.7E-11 91.6 14.6 107 280-399 224-352 (370)
185 1wao_1 Serine/threonine protei 98.5 8E-08 2.7E-12 104.0 5.9 120 127-307 9-134 (477)
186 2if4_A ATFKBP42; FKBP-like, al 98.5 3.4E-07 1.1E-11 94.4 10.3 147 314-501 178-328 (338)
187 3k9i_A BH0479 protein; putativ 98.5 2E-07 7E-12 79.5 6.4 86 485-578 3-95 (117)
188 3k9i_A BH0479 protein; putativ 98.5 2.3E-07 7.9E-12 79.2 6.6 84 105-192 3-93 (117)
189 1dce_A Protein (RAB geranylger 98.4 8.6E-06 3E-10 89.7 20.4 172 335-516 44-238 (567)
190 1zu2_A Mitochondrial import re 98.4 6.4E-07 2.2E-11 79.7 8.1 87 105-192 15-123 (158)
191 1dce_A Protein (RAB geranylger 98.4 6.6E-06 2.3E-10 90.6 17.4 183 371-576 44-270 (567)
192 1zu2_A Mitochondrial import re 98.4 2.2E-06 7.4E-11 76.3 10.7 103 335-453 17-140 (158)
193 3ma5_A Tetratricopeptide repea 98.3 1.8E-06 6.1E-11 71.3 8.1 70 500-577 3-74 (100)
194 3ma5_A Tetratricopeptide repea 98.2 5.1E-06 1.8E-10 68.5 9.4 69 120-192 3-73 (100)
195 2kat_A Uncharacterized protein 98.2 5.9E-06 2E-10 69.9 9.8 80 490-577 3-86 (115)
196 1na3_A Designed protein CTPR2; 98.2 9.3E-06 3.2E-10 64.9 10.0 62 123-188 8-71 (91)
197 2l6j_A TPR repeat-containing p 98.2 1.2E-06 4E-11 73.3 4.3 63 352-422 4-68 (111)
198 2kat_A Uncharacterized protein 98.1 1.1E-05 3.7E-10 68.2 10.2 79 110-192 3-85 (115)
199 1na3_A Designed protein CTPR2; 98.1 3.5E-05 1.2E-09 61.4 11.0 13 370-382 23-35 (91)
200 3n71_A Histone lysine methyltr 98.1 3.1E-05 1.1E-09 83.2 13.8 80 296-384 322-421 (490)
201 2l6j_A TPR repeat-containing p 98.1 3.3E-05 1.1E-09 64.2 11.2 68 503-578 3-72 (111)
202 1pc2_A Mitochondria fission pr 98.0 4.8E-05 1.6E-09 66.9 11.3 89 483-579 9-106 (152)
203 3n71_A Histone lysine methyltr 98.0 4.3E-05 1.5E-09 82.2 13.3 111 261-384 323-463 (490)
204 2v5f_A Prolyl 4-hydroxylase su 97.9 4.1E-05 1.4E-09 63.5 8.7 68 503-578 4-80 (104)
205 2uy1_A Cleavage stimulation fa 97.7 0.03 1E-06 60.3 30.6 202 337-572 196-412 (493)
206 3u64_A Protein TP_0956; tetrat 97.7 0.00077 2.6E-08 65.6 15.5 115 453-576 149-272 (301)
207 3bee_A Putative YFRE protein; 97.7 0.00018 6.3E-09 58.1 8.8 72 500-576 2-75 (93)
208 2v5f_A Prolyl 4-hydroxylase su 97.7 0.00026 8.8E-09 58.6 10.0 71 391-465 8-89 (104)
209 2kc7_A BFR218_protein; tetratr 97.6 0.00018 6.3E-09 58.4 8.1 86 88-192 3-93 (99)
210 3ly7_A Transcriptional activat 97.6 0.0013 4.3E-08 66.9 15.6 70 500-577 273-343 (372)
211 4g26_A Pentatricopeptide repea 97.6 0.0047 1.6E-07 66.6 21.3 151 296-454 39-205 (501)
212 2kc7_A BFR218_protein; tetratr 97.5 0.00016 5.6E-09 58.7 7.2 64 508-579 4-70 (99)
213 1pc2_A Mitochondria fission pr 97.5 0.0011 3.8E-08 58.2 12.5 91 440-547 14-112 (152)
214 3bee_A Putative YFRE protein; 97.4 0.00024 8.1E-09 57.4 6.6 70 120-190 2-73 (93)
215 3u64_A Protein TP_0956; tetrat 97.4 0.0035 1.2E-07 61.1 15.9 106 349-454 149-270 (301)
216 3ly7_A Transcriptional activat 97.4 0.0017 5.9E-08 65.9 13.9 65 351-423 276-341 (372)
217 3qww_A SET and MYND domain-con 97.4 0.00027 9.1E-09 74.7 8.3 79 334-420 312-410 (433)
218 4g26_A Pentatricopeptide repea 97.4 0.022 7.4E-07 61.4 22.7 153 219-384 35-203 (501)
219 3qww_A SET and MYND domain-con 97.3 0.00035 1.2E-08 73.8 8.3 80 296-384 311-410 (433)
220 3qwp_A SET and MYND domain-con 97.1 0.0031 1.1E-07 66.5 12.9 80 296-384 300-399 (429)
221 3qwp_A SET and MYND domain-con 97.1 0.0018 6.3E-08 68.3 10.6 80 333-420 300-399 (429)
222 2uy1_A Cleavage stimulation fa 97.0 0.48 1.6E-05 50.7 30.8 326 85-450 14-380 (493)
223 1nzn_A CGI-135 protein, fissio 96.6 0.026 9.1E-07 47.5 11.9 89 485-578 14-108 (126)
224 1nzn_A CGI-135 protein, fissio 96.6 0.033 1.1E-06 47.0 12.2 89 440-545 17-113 (126)
225 1y8m_A FIS1; mitochondria, unk 95.0 0.16 5.3E-06 43.6 9.8 93 482-579 16-112 (144)
226 3o48_A Mitochondria fission 1 94.9 0.2 6.8E-06 42.4 9.9 93 482-579 17-113 (134)
227 1y8m_A FIS1; mitochondria, unk 94.6 0.31 1.1E-05 41.7 10.6 74 454-544 37-115 (144)
228 3o48_A Mitochondria fission 1 94.6 0.2 6.9E-06 42.3 9.2 73 455-544 39-116 (134)
229 3ffl_A Anaphase-promoting comp 94.5 0.094 3.2E-06 46.3 7.5 122 141-290 33-166 (167)
230 3mkq_B Coatomer subunit alpha; 94.0 1.7 5.9E-05 38.8 14.7 97 141-272 18-114 (177)
231 3ffl_A Anaphase-promoting comp 93.7 0.51 1.7E-05 41.6 10.4 98 242-363 63-166 (167)
232 3mkq_A Coatomer beta'-subunit; 92.4 4.2 0.00014 46.0 19.1 41 262-309 667-707 (814)
233 3mkq_A Coatomer beta'-subunit; 92.0 14 0.00046 41.7 22.7 129 283-449 633-761 (814)
234 4ady_A RPN2, 26S proteasome re 91.7 22 0.00076 40.6 28.9 259 240-550 374-675 (963)
235 4h7y_A Dual specificity protei 90.8 3 0.0001 36.1 11.2 100 347-455 8-125 (161)
236 3mkq_B Coatomer subunit alpha; 90.1 9.8 0.00034 33.9 14.9 76 370-458 19-94 (177)
237 3txn_A 26S proteasome regulato 88.0 25 0.00086 35.8 18.3 89 283-384 103-209 (394)
238 3txn_A 26S proteasome regulato 85.8 21 0.00073 36.4 16.1 157 280-452 20-209 (394)
239 2wpv_A GET4, UPF0363 protein Y 85.0 15 0.0005 36.2 13.9 20 166-185 39-58 (312)
240 4h7y_A Dual specificity protei 84.5 2.7 9.2E-05 36.3 7.1 112 451-579 8-129 (161)
241 2jwa_A Receptor tyrosine-prote 83.5 0.77 2.6E-05 30.2 2.6 22 628-649 21-42 (44)
242 2wpv_A GET4, UPF0363 protein Y 82.4 35 0.0012 33.5 15.3 108 218-344 41-158 (312)
243 1ya0_A SMG-7 transcript varian 81.0 6.1 0.00021 41.9 10.0 76 390-469 154-233 (497)
244 1ya0_A SMG-7 transcript varian 77.3 5 0.00017 42.6 7.9 59 126-188 154-214 (497)
245 3lpz_A GET4 (YOR164C homolog); 76.2 64 0.0022 31.9 17.8 139 369-532 9-160 (336)
246 2l2t_A Receptor tyrosine-prote 69.8 1.8 6.2E-05 28.5 1.4 17 633-649 25-41 (44)
247 3kae_A CDC27, possible protein 67.9 59 0.002 28.6 10.7 79 369-454 46-144 (242)
248 3spa_A Mtrpol, DNA-directed RN 65.2 43 0.0015 38.6 12.1 92 355-454 130-231 (1134)
249 4ady_A RPN2, 26S proteasome re 65.0 2E+02 0.0067 33.0 33.3 233 281-549 337-605 (963)
250 2ks1_B Epidermal growth factor 64.0 4.1 0.00014 26.9 2.2 16 633-648 26-41 (44)
251 4b4t_R RPN7, 26S proteasome re 63.7 15 0.00053 38.0 7.9 80 106-189 111-197 (429)
252 3kae_A CDC27, possible protein 63.5 78 0.0027 27.8 11.7 90 85-188 33-142 (242)
253 2w2u_A Hypothetical P60 katani 60.7 15 0.0005 28.2 5.2 33 408-453 16-48 (83)
254 1wy6_A Hypothetical protein ST 60.4 59 0.002 27.6 9.0 59 405-463 104-164 (172)
255 4b4t_R RPN7, 26S proteasome re 59.5 21 0.00071 37.0 8.0 95 351-453 130-237 (429)
256 3spa_A Mtrpol, DNA-directed RN 58.6 57 0.0019 37.7 11.6 92 391-502 130-231 (1134)
257 2v6y_A AAA family ATPase, P60 58.3 17 0.00057 27.8 5.2 33 408-453 8-40 (83)
258 4gns_B Protein CSD3, chitin bi 56.9 74 0.0025 35.5 12.1 46 405-450 350-397 (754)
259 1wfd_A Hypothetical protein 15 50.7 11 0.00038 29.5 3.1 36 520-572 8-43 (93)
260 1wfd_A Hypothetical protein 15 50.6 27 0.00092 27.3 5.4 37 404-453 8-44 (93)
261 3lpz_A GET4 (YOR164C homolog); 48.7 2.1E+02 0.0071 28.2 25.2 63 241-307 93-160 (336)
262 4gns_B Protein CSD3, chitin bi 48.5 1E+02 0.0035 34.3 11.5 46 503-552 612-658 (754)
263 2w2u_A Hypothetical P60 katani 44.7 33 0.0011 26.1 4.9 16 222-237 31-46 (83)
264 1iij_A ERBB-2 receptor protein 42.8 5.1 0.00018 24.9 -0.0 17 630-646 19-35 (35)
265 2v6y_A AAA family ATPase, P60 42.4 37 0.0013 25.8 4.9 16 222-237 23-38 (83)
266 2ff4_A Probable regulatory pro 42.1 1.7E+02 0.0058 29.5 11.5 59 390-452 173-233 (388)
267 4b4t_P 26S proteasome regulato 41.2 1.1E+02 0.0037 31.7 10.0 93 353-453 138-247 (445)
268 2ff4_A Probable regulatory pro 40.7 1.2E+02 0.004 30.7 10.0 62 129-194 176-239 (388)
269 2v6x_A Vacuolar protein sortin 37.5 54 0.0019 24.9 5.2 33 407-452 9-41 (85)
270 4a5x_A MITD1, MIT domain-conta 36.3 56 0.0019 25.0 5.0 34 407-453 12-45 (86)
271 4b4t_P 26S proteasome regulato 35.9 1.3E+02 0.0044 31.1 9.5 93 279-384 137-246 (445)
272 2cpt_A SKD1 protein, vacuolar 34.5 52 0.0018 26.9 4.9 32 408-452 15-46 (117)
273 3re2_A Predicted protein; meni 32.0 1.8E+02 0.0062 28.8 8.8 72 454-536 253-324 (472)
274 4fhn_B Nucleoporin NUP120; pro 31.6 2.3E+02 0.0078 33.4 11.8 64 121-188 839-927 (1139)
275 2rpa_A Katanin P60 ATPase-cont 26.8 48 0.0016 24.9 3.0 27 427-453 15-41 (78)
276 2v6x_A Vacuolar protein sortin 26.2 97 0.0033 23.5 4.9 16 222-237 25-40 (85)
277 3u84_A Menin; MLL, JUND, ledgf 26.1 2.5E+02 0.0086 28.4 8.7 72 454-536 275-346 (550)
278 4fhn_B Nucleoporin NUP120; pro 25.9 2.8E+02 0.0095 32.7 11.1 87 356-450 846-964 (1139)
279 2rpa_A Katanin P60 ATPase-cont 25.2 55 0.0019 24.6 3.1 28 163-190 15-42 (78)
280 2wb7_A PT26-6P; extra chromoso 24.2 6E+02 0.021 26.3 11.4 116 369-544 408-523 (526)
281 3eab_A Spastin; spastin, MIT, 23.5 19 0.00066 27.8 0.3 14 558-571 33-46 (89)
282 2cpt_A SKD1 protein, vacuolar 23.3 95 0.0032 25.3 4.5 14 176-189 15-28 (117)
283 4a5x_A MITD1, MIT domain-conta 22.4 1.1E+02 0.0039 23.2 4.6 16 222-237 28-43 (86)
284 3re2_A Predicted protein; meni 21.8 3.9E+02 0.013 26.6 9.0 66 122-189 253-325 (472)
285 1wy6_A Hypothetical protein ST 20.3 4E+02 0.014 22.6 16.0 41 278-322 124-164 (172)
No 1
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=100.00 E-value=1.9e-50 Score=444.29 Aligned_cols=404 Identities=28% Similarity=0.408 Sum_probs=381.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhc----cCCHHHHHHHH
Q 005877 108 MEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLR----QDMHDKAVKLY 183 (672)
Q Consensus 108 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~----~~~~~~A~~~y 183 (672)
...++..++++++.+++++++.||.+|..|.++.+|+++|+.+|+++++.|++.+++.||.+|.. .+++++|+.+|
T Consensus 23 ~~~~~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 102 (490)
T 2xm6_A 23 GNVNLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWY 102 (490)
T ss_dssp --CCHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 45668889999999999999999999999999999999999999999999999999999999987 66666666666
Q ss_pred HHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCH
Q 005877 184 AELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDR 263 (672)
Q Consensus 184 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~ 263 (672)
+++ ++.+++.+++.||.+|..+ .|+++|+
T Consensus 103 ~~a--------------------------------------------------~~~~~~~a~~~Lg~~y~~g-~g~~~~~ 131 (490)
T 2xm6_A 103 KKA--------------------------------------------------ALKGLPQAQQNLGVMYHEG-NGVKVDK 131 (490)
T ss_dssp HHH--------------------------------------------------HHTTCHHHHHHHHHHHHHT-SSSCCCH
T ss_pred HHH--------------------------------------------------HHCCCHHHHHHHHHHHHcC-CCCCCCH
Confidence 654 5668999999999999998 5888999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Q 005877 264 TKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYF 343 (672)
Q Consensus 264 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~ 343 (672)
++|+.+|+++++.+++.+++.||.+|..|.|+++|+++|+.+|+++++.+++.+++.||.+|..|.|+.. ++++|+.+|
T Consensus 132 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~ 210 (490)
T 2xm6_A 132 AESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVER-NDAISAQWY 210 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC-CHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCc-CHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998866 999999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC
Q 005877 344 EKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP 423 (672)
Q Consensus 344 ~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 423 (672)
+++++.+++.++++||.+|..|.|+.+|+++|+.+|+++++.+++.++++||.+|..|.++.+|+++|+.+|+++++.++
T Consensus 211 ~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~ 290 (490)
T 2xm6_A 211 RKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGN 290 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHH
Q 005877 424 WSSLSRWALESYLK-----GDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQA 498 (672)
Q Consensus 424 ~~a~~~lg~~~~~~-----g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 498 (672)
+.+++.+|..+... +++++|+.+|+++++.+++.+++++|.+|...|. .+++++|+.+|+++
T Consensus 291 ~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~-------------~~~~~~A~~~~~~a 357 (490)
T 2xm6_A 291 SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGS-------------EEEHKKAVEWFRKA 357 (490)
T ss_dssp HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCC-------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------------cccHHHHHHHHHHH
Confidence 99999999999988 8999999999999999999999999999987322 67999999999999
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877 499 SEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA 576 (672)
Q Consensus 499 ~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 576 (672)
++.+++.++++||.+|..|.|+.+|+++|++||++|++.+++.++++||.+|..|.|+.+|+++|+.||++|++.+|+
T Consensus 358 ~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 358 AAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999865
No 2
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=100.00 E-value=1.6e-49 Score=436.98 Aligned_cols=429 Identities=24% Similarity=0.348 Sum_probs=389.1
Q ss_pred cccccCCCCCCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHH
Q 005877 73 SPVFEPSIDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHH 152 (672)
Q Consensus 73 ~~~~~~~~~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~ 152 (672)
...++++++++++.+++.+|..++. ..+..+++++|+.+|+++++.+++.+++.||.+|..|.|+.+|+++|+.+|+
T Consensus 27 ~~~~~~~a~~g~~~a~~~lg~~y~~---g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAESGEAKAQLELGYRYFQ---GNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---TSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHc---CCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 3445556778889999999998774 2345789999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHH
Q 005877 153 FAAEGGNIQSKMAVAYTYLR----QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDE 228 (672)
Q Consensus 153 ~A~~~~~~~a~~~Lg~~y~~----~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~ 228 (672)
++++.|++.+++.||.+|.. .+++++|+.+|++
T Consensus 104 ~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~------------------------------------------- 140 (490)
T 2xm6_A 104 KAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRL------------------------------------------- 140 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH-------------------------------------------
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH-------------------------------------------
Confidence 99999999999999999987 5566666665555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 005877 229 AFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTH 308 (672)
Q Consensus 229 Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 308 (672)
+++.+++.+++.||.+|..+ .++++|+++|+++|+++++.+++.+++.||.+|..|.|+.+++++|+.||++
T Consensus 141 -------a~~~~~~~a~~~Lg~~y~~g-~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 212 (490)
T 2xm6_A 141 -------AAEQGRDSGQQSMGDAYFEG-DGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRK 212 (490)
T ss_dssp -------HHHTTCHHHHHHHHHHHHHT-SSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred -------HHHCCCHHHHHHHHHHHHcC-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHH
Confidence 45668999999999999988 5888999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCH
Q 005877 309 AARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQ 388 (672)
Q Consensus 309 a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~ 388 (672)
+++.+++.+++.||.+|..|.|+.. ++++|+.+|+++++.+++.++++||.+|..|.++.+|+++|+.+|+++++.+++
T Consensus 213 a~~~~~~~a~~~lg~~y~~g~g~~~-~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~ 291 (490)
T 2xm6_A 213 SATSGDELGQLHLADMYYFGIGVTQ-DYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNS 291 (490)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCH
T ss_pred HHHCCCHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999988765 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC-CCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005877 389 KAFYQLAKMFHTG-VGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKG---DVGKAFLLYSRMAELGYEVAQSNAAW 464 (672)
Q Consensus 389 ~a~~~L~~~y~~g-~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g---~~~~A~~~~~~a~~~g~~~a~~nla~ 464 (672)
.++++||.+|..| .++.+|+++|+.+|+++++.+++.+++++|..+...| ++++|+.+|+++++.+++.+++++|.
T Consensus 292 ~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~ 371 (490)
T 2xm6_A 292 DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGN 371 (490)
T ss_dssp HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998 7889999999999999999999999999999999877 89999999999999999999999999
Q ss_pred HHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC-----C
Q 005877 465 ILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQS-----N 539 (672)
Q Consensus 465 ~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~-----~ 539 (672)
+|.... + ..+++++|+.+|+++++++++.++++||.+|..|.|+.+|+++|+.||++|++.+ +
T Consensus 372 ~y~~g~---------g---~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~ 439 (490)
T 2xm6_A 372 ALLQGK---------G---VKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGT 439 (490)
T ss_dssp HHHHTS---------S---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHcCC---------C---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCC
Confidence 997621 1 1568999999999999999999999999999999999999999999999999876 8
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 005877 540 AQAMFNLGYMHEHGQGLPLDLHLAKRYYDQA 570 (672)
Q Consensus 540 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 570 (672)
+.+.++||.++... ..+..+.|.++++++
T Consensus 440 ~~a~~~l~~~~~~~--~~~a~~~a~~~~~~~ 468 (490)
T 2xm6_A 440 ENRNITEKKLTAKQ--LQQAELLSQQYIEKY 468 (490)
T ss_dssp HHHHHHHTTSCHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHhH--HHHHHHHHHHHHHHH
Confidence 99999999987641 123344466777665
No 3
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=100.00 E-value=6.4e-43 Score=379.37 Aligned_cols=331 Identities=16% Similarity=0.081 Sum_probs=269.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHH
Q 005877 227 DEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWL 306 (672)
Q Consensus 227 ~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 306 (672)
++|+.+|+++++. ++.+++.||.++...+.++++|+++|+.+|+++++.+++.+++.||.+|..|.++..+ .++..++
T Consensus 55 ~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~-~~a~~~~ 132 (452)
T 3e4b_A 55 KQAEATYRAAADT-SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPN-VNAQQQI 132 (452)
T ss_dssp -----------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTT-CCHHHHH
T ss_pred HHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCC-HHHHHHH
Confidence 4455555555555 7778888888666665566778889999999998888888899999998888776666 7788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC
Q 005877 307 THAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG 386 (672)
Q Consensus 307 ~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 386 (672)
.++.+.+++.+++.||.+|..+.++++ +.+++..+++ ++..+++.++++||.+|.. .|+.+++++|+.+|+++++.+
T Consensus 133 ~~a~~~g~~~a~~~Lg~~y~~~~~~~~-~~~~a~~~~~-~a~~~~~~a~~~Lg~~~~~-~g~~~~~~~A~~~~~~aa~~g 209 (452)
T 3e4b_A 133 SQWQAAGYPEAGLAQVLLYRTQGTYDQ-HLDDVERICK-AALNTTDICYVELATVYQK-KQQPEQQAELLKQMEAGVSRG 209 (452)
T ss_dssp HHHHHHTCTTHHHHHHHHHHHHTCGGG-GHHHHHHHHH-HHTTTCTTHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCccc-CHHHHHHHHH-HHHcCCHHHHHHHHHHHHH-cCCcccHHHHHHHHHHHHHCC
Confidence 888888888899999999988766655 7777555554 4455667789999999888 555568999999999999888
Q ss_pred CHHHH--HHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCHHHHHH
Q 005877 387 HQKAF--YQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALE-S--YLKGDVGKAFLLYSRMAELGYEVAQSN 461 (672)
Q Consensus 387 ~~~a~--~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~-~--~~~g~~~~A~~~~~~a~~~g~~~a~~n 461 (672)
+..+. ++||.+|..|.++.+|+++|+.+|++++ .+++.+++++|.. + ...+|+++|+.+|+++++.|++.++++
T Consensus 210 ~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~ 288 (452)
T 3e4b_A 210 TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELL 288 (452)
T ss_dssp CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 77777 8899999888888899999999999988 8888899999988 4 467899999999999999999999999
Q ss_pred HHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHH
Q 005877 462 AAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQ 541 (672)
Q Consensus 462 la~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 541 (672)
+|.+|.. |. ++ ..++++|+.+|++++ ++++.++++||.+|..|.|+.+|+++|+.||++|++.+++.
T Consensus 289 Lg~~y~~-G~--------g~---~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~ 355 (452)
T 3e4b_A 289 LGKLYYE-GK--------WV---PADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNS 355 (452)
T ss_dssp HHHHHHH-CS--------SS---CCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTT
T ss_pred HHHHHHc-CC--------CC---CCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHH
Confidence 9999975 21 11 458999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877 542 AMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA 576 (672)
Q Consensus 542 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 576 (672)
++++||.+|..|.|+++|..+|+.||++|.+.++.
T Consensus 356 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 356 ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999999999999999998864
No 4
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=100.00 E-value=2.5e-41 Score=366.89 Aligned_cols=403 Identities=13% Similarity=0.024 Sum_probs=303.7
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 005877 89 YYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAY 168 (672)
Q Consensus 89 ~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~ 168 (672)
..+|...+. .+++++|+.+|+++++.+++++++.||.+|.. .|+..|.++|+.+|+++++. ++.+++.||.
T Consensus 7 ~~la~~~~~-------~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~-~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~ 77 (452)
T 3e4b_A 7 QRLANEALK-------RGDTVTAQQNYQQLAELGYSEAQVGLADIQVG-TRDPAQIKQAEATYRAAADT-SPRAQARLGR 77 (452)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHTCCTGGGTCC------------------------------CHHHHHH
T ss_pred HHHHHHHHh-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc-cCCCCCHHHHHHHHHHHHhC-CHHHHHHHHH
Confidence 345666554 58999999999999999999999999999966 56666779999999999988 9999999999
Q ss_pred HHhccC-----CHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHH
Q 005877 169 TYLRQD-----MHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAG 243 (672)
Q Consensus 169 ~y~~~~-----~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~ 243 (672)
++...+ ++++|+. +|+++++++++.
T Consensus 78 ~~~~~~~~~~~~~~~A~~--------------------------------------------------~~~~Aa~~g~~~ 107 (452)
T 3e4b_A 78 LLAAKPGATEAEHHEAES--------------------------------------------------LLKKAFANGEGN 107 (452)
T ss_dssp HHHTC--CCHHHHHHHHH--------------------------------------------------HHHHHHHTTCSS
T ss_pred HHHhCCCCCCcCHHHHHH--------------------------------------------------HHHHHHHCCCHH
Confidence 655433 4444444 455556677788
Q ss_pred HHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005877 244 AMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGY 323 (672)
Q Consensus 244 a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~ 323 (672)
+++.||.+|..++ ++..+ .+++++++++.+.+++.+++.||.+|..|.++.++.+++..+++.+ ..+++.+++.||.
T Consensus 108 A~~~Lg~~y~~~~-~~~~~-~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a-~~~~~~a~~~Lg~ 184 (452)
T 3e4b_A 108 TLIPLAMLYLQYP-HSFPN-VNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAA-LNTTDICYVELAT 184 (452)
T ss_dssp CHHHHHHHHHHCG-GGCTT-CCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCCCC-HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence 8888888888873 55556 7788888888888888888888888888877777888866655544 4566778888888
Q ss_pred HHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHH--HHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 005877 324 LYVKGYGVEKKNYTKAKEYFEKAADNEEAGGH--YNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTG 401 (672)
Q Consensus 324 ~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~--~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g 401 (672)
+|.. .|+.+ ++++|+.+|+++++.+++.+. ++||.+|..|.++.+|+++|+.+|++++ .+++.++++||.+|..|
T Consensus 185 ~~~~-~g~~~-~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~ 261 (452)
T 3e4b_A 185 VYQK-KQQPE-QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLAQLLYDF 261 (452)
T ss_dssp HHHH-TTCHH-HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHHHHHHHS
T ss_pred HHHH-cCCcc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHhC
Confidence 8886 44443 888888888888888877777 8888888888888888888888888888 88888888888886644
Q ss_pred CCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccc
Q 005877 402 VGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKG-----DVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCM 476 (672)
Q Consensus 402 ~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g-----~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~ 476 (672)
.+ .+|+++|+.+|+++++.+++.+++++|..|. .| |+++|+.+|++|+ +|++.+++++|.+|....
T Consensus 262 ~~-~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~------ 332 (452)
T 3e4b_A 262 PE-LGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGY------ 332 (452)
T ss_dssp GG-GCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTT------
T ss_pred CC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCC------
Confidence 44 7888888888888888888888888888877 45 8899999999999 999999999999887611
Q ss_pred CCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Q 005877 477 GESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGL 556 (672)
Q Consensus 477 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~ 556 (672)
++ ..++++|+.+|+++++++++.++++||.+|..|.|+.+|+.+|..||++|++.+++.+...|+.+...- .
T Consensus 333 ---g~---~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~--~ 404 (452)
T 3e4b_A 333 ---LG---KVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPL--T 404 (452)
T ss_dssp ---TS---SCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTC--C
T ss_pred ---CC---CcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC--C
Confidence 11 458999999999999999999999999999999999999999999999999999999999999996441 2
Q ss_pred CCCHHHHHHHHHHHHhc
Q 005877 557 PLDLHLAKRYYDQALEV 573 (672)
Q Consensus 557 ~~d~~~A~~~~~~A~~~ 573 (672)
+.+..+|.+..++-...
T Consensus 405 ~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 405 PAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45677777666655443
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=5.3e-30 Score=272.17 Aligned_cols=354 Identities=17% Similarity=0.101 Sum_probs=271.4
Q ss_pred hhhHHHHHHHHHHH--HhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHH
Q 005877 105 VRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAV 180 (672)
Q Consensus 105 ~~~~~~A~~~~~~a--~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~ 180 (672)
.|++++|+..++++ .+|+++.++..+|.++.. .+++++|..++++++. +.++.++..+|.+|...|++++|+
T Consensus 12 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQ----CRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 58888999888884 566888888888888888 7888899888888876 678888888999988888888888
Q ss_pred HHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 005877 181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLR 260 (672)
Q Consensus 181 ~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~ 260 (672)
.+|+++++. +++++.++..+|.++...
T Consensus 88 ~~~~~al~~------------------------------------------------~p~~~~~~~~l~~~~~~~----- 114 (388)
T 1w3b_A 88 EHYRHALRL------------------------------------------------KPDFIDGYINLAAALVAA----- 114 (388)
T ss_dssp HHHHHHHHH------------------------------------------------CTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHc------------------------------------------------CcchHHHHHHHHHHHHHc-----
Confidence 888887663 344666777777777766
Q ss_pred cCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCH
Q 005877 261 RDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNY 336 (672)
Q Consensus 261 ~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~ 336 (672)
+++++|++.|+++++ ++++.++..+|.++.. .+++++|+..|+++++. +++.++..+|.++.. .|++
T Consensus 115 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-----~g~~ 185 (388)
T 1w3b_A 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKA----LGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA-----QGEI 185 (388)
T ss_dssp SCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHT----TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-----TTCH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCH
Confidence 377777777777765 3566777777777777 77778888887777754 466777777777774 5677
Q ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHH
Q 005877 337 TKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMAT 412 (672)
Q Consensus 337 ~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~ 412 (672)
++|+.+|+++++. +++.++.++|.++.. .+++++|+..|+++++. +++.++.++|.++.. .+++++|+
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~ 257 (388)
T 1w3b_A 186 WLAIHHFEKAVTLDPNFLDAYINLGNVLKE----ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE----QGLIDLAI 257 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHH----cCCHHHHH
Confidence 8888888877664 467777888888877 77788888888877663 456777788877776 77888888
Q ss_pred HHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhH
Q 005877 413 ALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERH 488 (672)
Q Consensus 413 ~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~ 488 (672)
.+|+++++..| +.++..+|..+...|++++|+..|+++++. .+..++.+++.++.. .+++
T Consensus 258 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----------------~g~~ 321 (388)
T 1w3b_A 258 DTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE----------------QGNI 321 (388)
T ss_dssp HHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----------------TTCH
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH----------------cCCH
Confidence 88888877664 556777788888888888888888887654 466777777777766 6677
Q ss_pred HHHHHHHHHHHh--CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHc
Q 005877 489 QCAHSLWWQASE--QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEH 552 (672)
Q Consensus 489 ~~A~~~~~~a~~--~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~ 552 (672)
++|+.+++++++ ++++.+++++|.+|. ..+++++|+.+|+++++. +++.++++||.++..
T Consensus 322 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~----~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 322 EEAVRLYRKALEVFPEFAAAHSNLASVLQ----QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHHHHHHHTTSCTTCHHHHHHHHHHHH----TTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHH
Confidence 778777777655 455778888888888 788888888888888764 678888888888754
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=4.1e-29 Score=265.33 Aligned_cols=350 Identities=18% Similarity=0.121 Sum_probs=306.0
Q ss_pred HHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchh
Q 005877 130 LGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIR 207 (672)
Q Consensus 130 Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~ 207 (672)
+|..+.. .+++++|+..++++.. ++++.++..+|.++...+++++|+.+++++++
T Consensus 5 ~a~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~------------------- 61 (388)
T 1w3b_A 5 LAHREYQ----AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK------------------- 61 (388)
T ss_dssp HHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------------------
Confidence 4555555 6777777777777654 66777777777777777777777777766654
Q ss_pred cccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHH
Q 005877 208 IHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFL 285 (672)
Q Consensus 208 l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~L 285 (672)
.++.++.+++.+|.+|... +++++|+..|+++++ ++++.++..+
T Consensus 62 -----------------------------~~p~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~l 107 (388)
T 1w3b_A 62 -----------------------------QNPLLAEAYSNLGNVYKER-----GQLQEAIEHYRHALRLKPDFIDGYINL 107 (388)
T ss_dssp -----------------------------HCTTCHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -----------------------------cCCCchHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 2346889999999999988 499999999999986 5788999999
Q ss_pred HHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHH
Q 005877 286 GEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVM 361 (672)
Q Consensus 286 g~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~ 361 (672)
|.++.. .+++++|+..|+++++. ++..+...+|.++.. .|++++|+.+|+++++. +++.+++++|.+
T Consensus 108 ~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 178 (388)
T 1w3b_A 108 AAALVA----AGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKA-----LGRLEEAKACYLKAIETQPNFAVAWSNLGCV 178 (388)
T ss_dssp HHHHHH----HSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHT-----TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999 99999999999999875 477889999999985 67999999999999876 578999999999
Q ss_pred HHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhc
Q 005877 362 YYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLK 437 (672)
Q Consensus 362 y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~ 437 (672)
+.. .+++++|+.+|+++++. .+..++.++|.++.. .+++++|+..|+++++..| +.++..+|.++...
T Consensus 179 ~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 250 (388)
T 1w3b_A 179 FNA----QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE----ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ 250 (388)
T ss_dssp HHT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHH----cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHc
Confidence 999 99999999999999874 578999999999998 8999999999999999875 56788999999999
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh--CCCHHHHHHHHHH
Q 005877 438 GDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE--QGNEHAALLIGDA 513 (672)
Q Consensus 438 g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lG~~ 513 (672)
|++++|+..|+++++. .++.++.++|.++.. .+++++|+.+++++++ +.++.+++++|.+
T Consensus 251 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----------------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALKE----------------KGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp TCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH----------------HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 9999999999999876 478899999999988 7889999999998755 5678999999999
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877 514 YYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA 577 (672)
Q Consensus 514 y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 577 (672)
+. ..+++++|+.+|+++++. +++.++++||.+|.. .|++++|+.+|+++++.+|+.
T Consensus 315 ~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~p~~ 372 (388)
T 1w3b_A 315 KR----EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ----QGKLQEALMHYKEAIRISPTF 372 (388)
T ss_dssp HH----TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT----TTCCHHHHHHHHHHHTTCTTC
T ss_pred HH----HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCC
Confidence 99 899999999999999874 689999999999987 899999999999999999874
No 7
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.97 E-value=1.7e-29 Score=254.77 Aligned_cols=260 Identities=27% Similarity=0.338 Sum_probs=184.7
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHH
Q 005877 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSA 317 (672)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a 317 (672)
+++++.+++.+|.+|... +++++|+.+|+++++.+++.+++.||.+|..|.++.+++++|+.+|+++++.+++.+
T Consensus 2 ~~~~~~a~~~lg~~~~~~-----~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 76 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKE-----KDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNG 76 (273)
T ss_dssp ---CHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CCCChHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHH
Confidence 456777888888887777 378888888888888777888888888888777777888888888888887777778
Q ss_pred HHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005877 318 YNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKM 397 (672)
Q Consensus 318 ~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~ 397 (672)
++.||.+|..|.++.. ++++|+.+|+++++.+++.+++++|.+|..|.++.+++++|+.+|+++++.+++.+++++|.+
T Consensus 77 ~~~lg~~~~~g~~~~~-~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 155 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQ-NTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCccc-CHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 8888888877766544 778888888888777777778888887777777777777777777777777777777777777
Q ss_pred HHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005877 398 FHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYL----KGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGS 473 (672)
Q Consensus 398 y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~----~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~ 473 (672)
|..|.++.+++++|+.+|+++++.+++.+++.+|.++.. .+++++|+.+|
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~-------------------------- 209 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARY-------------------------- 209 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHH--------------------------
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHH--------------------------
Confidence 777766677777777777766665555555555554444 44444444444
Q ss_pred cccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005877 474 MCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHE 551 (672)
Q Consensus 474 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~ 551 (672)
+++++.+++.++++||.+|..|.|..+|+++|+++|++|++.++..+..+|+.+..
T Consensus 210 ----------------------~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~ 265 (273)
T 1ouv_A 210 ----------------------SKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILKQLKI 265 (273)
T ss_dssp ----------------------HHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHHHTCCC
T ss_pred ----------------------HHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444555566677777777777777777777777777777777777766543
No 8
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.97 E-value=2.6e-29 Score=253.29 Aligned_cols=257 Identities=26% Similarity=0.353 Sum_probs=165.7
Q ss_pred hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHHHHhhhh
Q 005877 120 MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLR----QDMHDKAVKLYAELAEIAVNSFL 195 (672)
Q Consensus 120 ~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~----~~~~~~A~~~y~~a~~~~~~~~~ 195 (672)
+++++.+++.+|.+|.. .+++++|+.+|+++++++++.+++.||.+|.. .+++++|+.+|+++
T Consensus 2 ~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a--------- 68 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYK----EKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA--------- 68 (273)
T ss_dssp ---CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH---------
T ss_pred CCCChHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHH---------
Confidence 45666666666666666 56666666666666666666666666666665 55555555555543
Q ss_pred ccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH
Q 005877 196 ISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD 275 (672)
Q Consensus 196 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~ 275 (672)
++.+++.+++.||.+|..+ .++.+++++|+.+|+++++
T Consensus 69 -----------------------------------------~~~~~~~a~~~lg~~~~~g-~~~~~~~~~A~~~~~~a~~ 106 (273)
T 1ouv_A 69 -----------------------------------------CDLNYSNGCHLLGNLYYSG-QGVSQNTNKALQYYSKACD 106 (273)
T ss_dssp -----------------------------------------HHTTCHHHHHHHHHHHHHT-SSSCCCHHHHHHHHHHHHH
T ss_pred -----------------------------------------HHCCCHHHHHHHHHHHhCC-CCcccCHHHHHHHHHHHHH
Confidence 2334566666666666664 3455666667777766666
Q ss_pred cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHH
Q 005877 276 KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGH 355 (672)
Q Consensus 276 ~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~ 355 (672)
.+++.+++.||.+|..|.++.+++++|+.+|+++++.+++.+++.+|.+|..|.++. +++++|+.+|+++++.+++.++
T Consensus 107 ~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~~a~ 185 (273)
T 1ouv_A 107 LKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTP-KDLKKALASYDKACDLKDSPGC 185 (273)
T ss_dssp TTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 666666666776666666666666677777766666666666666666666655443 3666666666666666666666
Q ss_pred HHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 005877 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWAL 432 (672)
Q Consensus 356 ~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 432 (672)
+++|.+|..|.++.+++++|+.+|+++++.+++.++++||.+|..|.|+.+++++|+.+|+++++.++..+...+..
T Consensus 186 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~ 262 (273)
T 1ouv_A 186 FNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILKQ 262 (273)
T ss_dssp HHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666655555443
No 9
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.8e-28 Score=275.63 Aligned_cols=429 Identities=13% Similarity=0.038 Sum_probs=354.6
Q ss_pred hhhHHHHHHHHHHHHhC-CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHhccCCHHHHHHH
Q 005877 105 VRVMEEATSEVESAAME-GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE-GGNIQSKMAVAYTYLRQDMHDKAVKL 182 (672)
Q Consensus 105 ~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~-~~~~~a~~~Lg~~y~~~~~~~~A~~~ 182 (672)
.+++++|+.+|++.... .+...++.+|.+|.. .+++++|+.+|+++.. +.++.+++.++.+|...|++++|+..
T Consensus 97 ~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 172 (597)
T 2xpi_A 97 QQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCC----TGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNL 172 (597)
T ss_dssp TTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----TTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccCchHHHHHHHHHHhhCCCchHHHHHHHHHHH----cCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHH
Confidence 58899999999995432 456788999999999 9999999999999864 67899999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHh------
Q 005877 183 YAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYF------ 254 (672)
Q Consensus 183 y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~------ 254 (672)
|++..........................+...++..+...|++++|+..|+++.+. .++.++..++.++..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 252 (597)
T 2xpi_A 173 LGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEW 252 (597)
T ss_dssp HCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHH
T ss_pred HhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHH
Confidence 985321100000000000000000111234557899999999999999999998665 578888887764420
Q ss_pred ---------------------------cCCCcccCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHH
Q 005877 255 ---------------------------GLRGLRRDRTKALMWFSKAAD-KGEPQSMEFLGEIYARGAGVERNYTKALEWL 306 (672)
Q Consensus 255 ---------------------------~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 306 (672)
......+++++|++.|+++++ ..++.++..+|.+|.. .+++++|+.+|
T Consensus 253 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 328 (597)
T 2xpi_A 253 DLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV----RSRFIDVLAIT 328 (597)
T ss_dssp HHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH----TTCHHHHHHHH
T ss_pred HHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH----hcCHHHHHHHH
Confidence 011234689999999999877 4789999999999999 99999999999
Q ss_pred HHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHH
Q 005877 307 THAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVA 382 (672)
Q Consensus 307 ~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 382 (672)
+++++.+ +..++..++.++.. .|++++|+..|+++++. +++.+++.+|.+|.. .+++++|+.+|+++
T Consensus 329 ~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 399 (597)
T 2xpi_A 329 TKILEIDPYNLDVYPLHLASLHE-----SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLC----VNKISEARRYFSKS 399 (597)
T ss_dssp HHHHHHCTTCCTTHHHHHHHHHH-----HTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHH----TTCHHHHHHHHHHH
T ss_pred HHHHHcCcccHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH----hccHHHHHHHHHHH
Confidence 9998753 67788899999985 67999999999999865 578999999999999 99999999999999
Q ss_pred HHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCH
Q 005877 383 ANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYE 456 (672)
Q Consensus 383 ~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~ 456 (672)
++. .+..+++.++.+|.. .+++++|+.+|+++++..+ ..++..+|..+...|++++|+.+|+++++. .++
T Consensus 400 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 475 (597)
T 2xpi_A 400 STMDPQFGPAWIGFAHSFAI----EGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDP 475 (597)
T ss_dssp HHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCH
T ss_pred HHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 874 578899999999998 8999999999999998874 567889999999999999999999999765 578
Q ss_pred HHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhC------CC---HHHHHHHHHHHHhCCCCCCCHHHH
Q 005877 457 VAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ------GN---EHAALLIGDAYYYGRGTQRDYERA 527 (672)
Q Consensus 457 ~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------~~---~~a~~~lG~~y~~g~g~~~d~~~A 527 (672)
.++++++.++.+ .+++++|+.+++++.+. .+ ..++..+|.+|. ..+++++|
T Consensus 476 ~~~~~l~~~~~~----------------~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~----~~g~~~~A 535 (597)
T 2xpi_A 476 LLLNELGVVAFN----------------KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR----KLKMYDAA 535 (597)
T ss_dssp HHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH----HTTCHHHH
T ss_pred HHHHHHHHHHHH----------------hCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH----HhcCHHHH
Confidence 899999999988 77899999999987653 21 678999999999 89999999
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877 528 AEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK 578 (672)
Q Consensus 528 ~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 578 (672)
+.+|+++++ ++++.+++.||.+|.. .|++++|+++|+++++++|+..
T Consensus 536 ~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p~~~ 584 (597)
T 2xpi_A 536 IDALNQGLLLSTNDANVHTAIALVYLH----KKIPGLAITHLHESLAISPNEI 584 (597)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCh
Confidence 999999976 4689999999999988 8999999999999999999863
No 10
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2.8e-28 Score=274.01 Aligned_cols=434 Identities=11% Similarity=0.014 Sum_probs=356.4
Q ss_pred ccCCCCCCcccccCCCCC-CCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH-hCCChHHHHHHHHHhhcCCcccC
Q 005877 65 ENLDPGSWSPVFEPSIDP-GAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA-MEGDPHARSVLGFLYGMGMMRER 142 (672)
Q Consensus 65 ~~~~~~~a~~~~~~~~~~-~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~-~~~~~~a~~~Lg~~y~~G~g~~~ 142 (672)
..+++++|+..|++.... +++...+.++..+.. .+++++|+..|+++. .+.++.+++.++.+|.. .+
T Consensus 96 ~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~-------~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 164 (597)
T 2xpi_A 96 MQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCC-------TGDYARAKCLLTKEDLYNRSSACRYLAAFCLVK----LY 164 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-------TTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHH----TT
T ss_pred HccCchHHHHHHHHHHhhCCCchHHHHHHHHHHH-------cCcHHHHHHHHHHHhccccchhHHHHHHHHHHH----Hh
Confidence 346777777777766321 123455666666654 588999999999953 46889999999999999 99
Q ss_pred CHHHHHHHHHHHHhCC------------------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccC----CC
Q 005877 143 NKGKAFLYHHFAAEGG------------------NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISK----DS 200 (672)
Q Consensus 143 d~~~A~~~~~~A~~~~------------------~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~----~~ 200 (672)
++++|+..|++..... ++.+++.+|.+|...|++++|+.+|+++++..+....... ..
T Consensus 165 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 244 (597)
T 2xpi_A 165 DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNH 244 (597)
T ss_dssp CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred hHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhh
Confidence 9999999999633222 4789999999999999999999999999987654221000 00
Q ss_pred C---c----------cc-----chhcccCchhhhhHhhhccCChHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCccc
Q 005877 201 P---V----------IE-----PIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ-KGNAGAMYKIGLFYYFGLRGLRR 261 (672)
Q Consensus 201 ~---~----------~~-----~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~-~~~~~a~~~Lg~~y~~~~~~~~~ 261 (672)
. . .. ...........++..+...|++++|+..|+++.+ +.++.++..+|.+|... +
T Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g 319 (597)
T 2xpi_A 245 LLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVR-----S 319 (597)
T ss_dssp CSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHT-----T
T ss_pred cccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh-----c
Confidence 0 0 00 0000000112235567788999999999999766 36899999999999988 4
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHH
Q 005877 262 DRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYT 337 (672)
Q Consensus 262 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~ 337 (672)
++++|+++|+++++. .+..++..++.+|.. .+++++|+..++++++. +++.+++.+|.+|.. .|+++
T Consensus 320 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~ 390 (597)
T 2xpi_A 320 RFIDVLAITTKILEIDPYNLDVYPLHLASLHE----SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLC-----VNKIS 390 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHH-----TTCHH
T ss_pred CHHHHHHHHHHHHHcCcccHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH-----hccHH
Confidence 999999999999864 578889999999998 99999999999999865 478899999999986 67999
Q ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHH
Q 005877 338 KAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATA 413 (672)
Q Consensus 338 ~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~ 413 (672)
+|+.+|+++++. .++.+++.+|.+|.. .+++++|+++|+++.+. .+..++..++.+|.. .+++++|+.
T Consensus 391 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 462 (597)
T 2xpi_A 391 EARRYFSKSSTMDPQFGPAWIGFAHSFAI----EGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ----LGNILLANE 462 (597)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH----HTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----cCCHHHHHH
Confidence 999999999875 578999999999999 99999999999999875 467899999999998 899999999
Q ss_pred HHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc------C---CHHHHHHHHHHHHHhCCCCcccCCCCCC
Q 005877 414 LYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL------G---YEVAQSNAAWILDKYGEGSMCMGESGFC 482 (672)
Q Consensus 414 ~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~------g---~~~a~~nla~~l~~~~~~~~~~~~~~~~ 482 (672)
+|+++++..+ +.++..+|..+...|++++|+.+|+++++. . ...++.+++.++.+
T Consensus 463 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~-------------- 528 (597)
T 2xpi_A 463 YLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK-------------- 528 (597)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH--------------
Confidence 9999998764 667899999999999999999999999775 2 16789999999988
Q ss_pred CchHhHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 005877 483 TDAERHQCAHSLWWQASE--QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHE 551 (672)
Q Consensus 483 ~~~~~~~~A~~~~~~a~~--~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~ 551 (672)
.+++++|+.+++++.+ ++++.+++.+|.+|. ..+++++|+++|+++++ ++++.++..|+.+|.
T Consensus 529 --~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 529 --LKMYDAAIDALNQGLLLSTNDANVHTAIALVYL----HKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp --TTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred --hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH----HhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 7789999999998754 567999999999999 89999999999999977 478999999999875
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-26 Score=255.13 Aligned_cols=393 Identities=16% Similarity=0.096 Sum_probs=294.4
Q ss_pred hHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCc
Q 005877 124 PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE-GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPV 202 (672)
Q Consensus 124 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~-~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~ 202 (672)
+.+++.+|..|.. .+++++|+.+|++++. ..++.++..+|.+|...|++++|+.+|+++++..|...
T Consensus 6 a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------- 73 (514)
T 2gw1_A 6 ALALKDKGNQFFR----NKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYS-------- 73 (514)
T ss_dssp HHHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCH--------
T ss_pred HHHHHHHHHHHHH----hccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHH--------
Confidence 4566677777776 6777777777777765 23567777777777777777777777777766543211
Q ss_pred ccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcC--CHHHHH-HHHHHHHhcCCCcccCHHHHHH-----------
Q 005877 203 IEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG--NAGAMY-KIGLFYYFGLRGLRRDRTKALM----------- 268 (672)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~--~~~a~~-~Lg~~y~~~~~~~~~~~~~A~~----------- 268 (672)
.+...++.++...|++++|+..|+++...+ +..... .+....... ......+++.
T Consensus 74 --------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 142 (514)
T 2gw1_A 74 --------KVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQ---AMSKLKEKFGDIDTATATPTE 142 (514)
T ss_dssp --------HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHH---HHHHHTTC-------------
T ss_pred --------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhh
Confidence 223446666777777777777777765553 111111 111111000 0000001110
Q ss_pred -----------------------HHHHHHH----------cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH----
Q 005877 269 -----------------------WFSKAAD----------KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR---- 311 (672)
Q Consensus 269 -----------------------~~~~a~~----------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~---- 311 (672)
.+..... +.++.+++.+|.++..- ...+++++|+.+|+++++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~ 221 (514)
T 2gw1_A 143 LSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYK-RSPESYDKADESFTKAARLFEE 221 (514)
T ss_dssp --------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSS-CCTTHHHHHHHHHHHHHHHHHH
T ss_pred ccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHh-hhhccHHHHHHHHHHHHHHhhh
Confidence 0000000 12377788888876520 116899999999999998
Q ss_pred ------------cCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCchhcHHHHHHH
Q 005877 312 ------------QQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-EAGGHYNLGVMYYKGIGVKRDVKLACKY 378 (672)
Q Consensus 312 ------------~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 378 (672)
..++.++..+|.++.. .|++++|+.+|+++++.+ .+.+++.+|.+|.. .+++++|+.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~----~~~~~~A~~~ 292 (514)
T 2gw1_A 222 QLDKNNEDEKLKEKLAISLEHTGIFKFL-----KNDPLGAHEDIKKAIELFPRVNSYIYMALIMAD----RNDSTEYYNY 292 (514)
T ss_dssp HTTTSTTCHHHHHHHHHHHHHHHHHHHH-----SSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHT----SSCCTTGGGH
T ss_pred hhccCccccccChHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHH----CCCHHHHHHH
Confidence 3456788999999986 679999999999998753 28899999999999 8999999999
Q ss_pred HHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 005877 379 FLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL- 453 (672)
Q Consensus 379 ~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~- 453 (672)
|+++++. .++.++..+|.++.. .+++++|+.+|+++++..+ +.++..+|.++...|++++|+.+++++++.
T Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 368 (514)
T 2gw1_A 293 FDKALKLDSNNSSVYYHRGQMNFI----LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF 368 (514)
T ss_dssp HHHHHTTCTTCTHHHHHHHHHHHH----TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS
T ss_pred HHHHhhcCcCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 9999875 467899999999998 8999999999999998874 567889999999999999999999999765
Q ss_pred -CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhC--CCH------HHHHHHHHHHHhCCCC---C
Q 005877 454 -GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ--GNE------HAALLIGDAYYYGRGT---Q 521 (672)
Q Consensus 454 -g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~------~a~~~lG~~y~~g~g~---~ 521 (672)
+++.++.++|.++.. .+++++|+.+++++.+. .++ .+++.+|.+|. . .
T Consensus 369 ~~~~~~~~~la~~~~~----------------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~ 428 (514)
T 2gw1_A 369 PEAPEVPNFFAEILTD----------------KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLT----RNPTV 428 (514)
T ss_dssp TTCSHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHH----TSCCT
T ss_pred ccCHHHHHHHHHHHHH----------------CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHh----hhhhc
Confidence 477889999999988 77899999999987553 333 39999999999 7 8
Q ss_pred CCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877 522 RDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA 577 (672)
Q Consensus 522 ~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 577 (672)
+++++|+.+|+++++ ++++.+++.+|.+|.. .|++++|+.+|+++++++|+.
T Consensus 429 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQ----QEDIDEAITLFEESADLARTM 482 (514)
T ss_dssp THHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSSH
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhcccc
Confidence 999999999999977 4789999999999987 899999999999999999875
No 12
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.95 E-value=6.8e-27 Score=226.38 Aligned_cols=199 Identities=21% Similarity=0.238 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHH
Q 005877 227 DEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWL 306 (672)
Q Consensus 227 ~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 306 (672)
.+|+.+|+++++.|++.+++.||.+|... +|+++|++||+++++.+++.+++.||.+|.. .|++.|+++|+.||
T Consensus 3 ~eA~~~~~~aa~~g~~~a~~~lg~~~~~~-----~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 3 TEPGSQYQQQAEAGDRRAQYYLADTWVSS-----GDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp -CTTHHHHHHHHTTCHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred chHHHHHHHHHHCCCHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 46888999999999999999999999887 5999999999999999999999999999998 48888999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCC----HHHHHHHHHHHHcCCCchhcHHHHHHHHHHH
Q 005877 307 THAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVA 382 (672)
Q Consensus 307 ~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 382 (672)
+++++.+++.+++.||.+|..|.|+.+ |+++|+.+|+++++.++ +.++++||.+|..|.++.+|+++|+.||++|
T Consensus 77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 77 EKAVEAGSKSGEIVLARVLVNRQAGAT-DVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHHHTTCHHHHHHHHHHHTCGGGSSC-CHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCcc-CHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 999999999999999999998888766 99999999999999988 8999999999999999999999999999999
Q ss_pred HHc-CCHHHHHHHHHHHHcCCC--ccCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 005877 383 ANA-GHQKAFYQLAKMFHTGVG--LKKNLHMATALYKLVAERGPWSSLSRWAL 432 (672)
Q Consensus 383 ~~~-~~~~a~~~L~~~y~~g~g--~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 432 (672)
++. +++.++++||.+|..|.| +.+|+++|+.||+++++.+++.+...++.
T Consensus 156 ~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~~ 208 (212)
T 3rjv_A 156 SSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDR 208 (212)
T ss_dssp HHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 997 889999999999999887 88999999999999999888887776654
No 13
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.95 E-value=1e-26 Score=225.10 Aligned_cols=200 Identities=19% Similarity=0.223 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccC
Q 005877 145 GKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRG 224 (672)
Q Consensus 145 ~~A~~~~~~A~~~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g 224 (672)
.+|+.+|+++++.|++.+++.||.+|...+++++|+.+|+++
T Consensus 3 ~eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a-------------------------------------- 44 (212)
T 3rjv_A 3 TEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKA-------------------------------------- 44 (212)
T ss_dssp -CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH--------------------------------------
T ss_pred chHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH--------------------------------------
Confidence 457788888888888888888888887777777777776664
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHH
Q 005877 225 EDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALE 304 (672)
Q Consensus 225 ~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 304 (672)
++.+++.+++.||.+|..+ ++++|+++|+++|+++++.+++.+++.||.+|..|.|+.+|+++|+.
T Consensus 45 ------------~~~g~~~a~~~lg~~y~~~--g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 110 (212)
T 3rjv_A 45 ------------AAQGDGDALALLAQLKIRN--PQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAIT 110 (212)
T ss_dssp ------------HHTTCHHHHHHHHHHTTSS--TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred ------------HHcCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHH
Confidence 4557888888888888873 77789999999999999999999999999999998888899999999
Q ss_pred HHHHHHHcCC----HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCC--chhcHHHHHH
Q 005877 305 WLTHAARQQL----YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-EEAGGHYNLGVMYYKGIG--VKRDVKLACK 377 (672)
Q Consensus 305 ~~~~a~~~~~----~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g--~~~~~~~A~~ 377 (672)
||+++++.++ +.+++.||.+|..|.|+.+ |+++|+.+|+++++. +++.++++||.+|..|.+ +.+|+++|+.
T Consensus 111 ~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~ 189 (212)
T 3rjv_A 111 LLQDAARDSESDAAVDAQMLLGLIYASGVHGPE-DDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALH 189 (212)
T ss_dssp HHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSC-CHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHH
T ss_pred HHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHH
Confidence 9999998887 8899999999998888766 899999999999888 788899999999998876 7889999999
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 005877 378 YFLVAANAGHQKAFYQLAKM 397 (672)
Q Consensus 378 ~~~~A~~~~~~~a~~~L~~~ 397 (672)
||++|++.|++.+...|+.+
T Consensus 190 ~~~~A~~~g~~~A~~~l~~l 209 (212)
T 3rjv_A 190 WLNVSCLEGFDTGCEEFDRI 209 (212)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHh
Confidence 99999999999988888865
No 14
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.3e-25 Score=242.66 Aligned_cols=411 Identities=17% Similarity=0.071 Sum_probs=320.4
Q ss_pred cCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhC-CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHH
Q 005877 85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESAAME-GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQ 161 (672)
Q Consensus 85 ~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~ 161 (672)
+++++.+|..++. .|++++|+..|+++... .++.+++.+|.+|.. .+++++|+.+++++++ ++++.
T Consensus 6 a~~~~~~g~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~ 74 (514)
T 2gw1_A 6 ALALKDKGNQFFR-------NKKYDDAIKYYNWALELKEDPVFYSNLSACYVS----VGDLKKVVEMSTKALELKPDYSK 74 (514)
T ss_dssp HHHHHHHHHHHHH-------TSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCSCCHH
T ss_pred HHHHHHHHHHHHH-------hccHHHHHHHHHHHHhcCccHHHHHhHHHHHHH----HhhHHHHHHHHHHHhccChHHHH
Confidence 4567788888775 58999999999996543 479999999999999 9999999999999986 78999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhccc-CchhhhhHhhhccCChHH------------
Q 005877 162 SKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHN-GAEENKGALRKSRGEDDE------------ 228 (672)
Q Consensus 162 a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~g~~~~------------ 228 (672)
+++.+|.+|...|++++|+..|+++++..+.... .. ...+.. .............+..+.
T Consensus 75 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 147 (514)
T 2gw1_A 75 VLLRRASANEGLGKFADAMFDLSVLSLNGDFNDA------SI-EPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQP 147 (514)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGG------GT-HHHHHHHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccc------hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCh
Confidence 9999999999999999999999999875431100 00 000000 000000000000000000
Q ss_pred ---------------HHHHHHHHH----------HcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--------
Q 005877 229 ---------------AFQILEYQA----------QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD-------- 275 (672)
Q Consensus 229 ---------------Ai~~~~~aa----------~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~-------- 275 (672)
.+..+.... ++.++.+.+.+|.+++.. ...+++++|+.+|+++++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~ 225 (514)
T 2gw1_A 148 AKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYK--RSPESYDKADESFTKAARLFEEQLDK 225 (514)
T ss_dssp ---------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSS--CCTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHh--hhhccHHHHHHHHHHHHHHhhhhhcc
Confidence 000000000 123488889999988751 112599999999999998
Q ss_pred --------cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Q 005877 276 --------KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKA 346 (672)
Q Consensus 276 --------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a 346 (672)
+.++.+++.+|.++.. .+++++|+.+|+++++.. .+.++..+|.+|.. .+++++|+.+|+++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~ 296 (514)
T 2gw1_A 226 NNEDEKLKEKLAISLEHTGIFKFL----KNDPLGAHEDIKKAIELFPRVNSYIYMALIMAD-----RNDSTEYYNYFDKA 296 (514)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHH----SSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHT-----SSCCTTGGGHHHHH
T ss_pred CccccccChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHH-----CCCHHHHHHHHHHH
Confidence 4567899999999999 999999999999998753 28889999999986 67999999999999
Q ss_pred HhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC
Q 005877 347 ADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG 422 (672)
Q Consensus 347 ~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~ 422 (672)
++. +++.++..+|.+|.. .+++++|+.+|+++++.. ++.++..+|.++.. .+++++|+.+|+++++..
T Consensus 297 ~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 368 (514)
T 2gw1_A 297 LKLDSNNSSVYYHRGQMNFI----LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYR----ENKFDDCETLFSEAKRKF 368 (514)
T ss_dssp HTTCTTCTHHHHHHHHHHHH----TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTT----TTCHHHHHHHHHHHHHHS
T ss_pred hhcCcCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHc
Confidence 886 478999999999999 999999999999998754 67899999999987 899999999999999886
Q ss_pred C--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C------HHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHH
Q 005877 423 P--WSSLSRWALESYLKGDVGKAFLLYSRMAELG--Y------EVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAH 492 (672)
Q Consensus 423 ~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g--~------~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~ 492 (672)
+ +.++..+|.++...|++++|+.+|+++++.. + ..++.++|.++.... ..+++++|+
T Consensus 369 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------------~~~~~~~A~ 435 (514)
T 2gw1_A 369 PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNP-------------TVENFIEAT 435 (514)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSC-------------CTTHHHHHH
T ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhh-------------hcCCHHHHH
Confidence 4 6788999999999999999999999997653 3 238889999886410 035899999
Q ss_pred HHHHHHHh--CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHH
Q 005877 493 SLWWQASE--QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYM 549 (672)
Q Consensus 493 ~~~~~a~~--~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~ 549 (672)
.+++++++ +.++.+++.+|.+|. ..+++++|+.+|+++++. +++.++..+.+.
T Consensus 436 ~~~~~a~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 436 NLLEKASKLDPRSEQAKIGLAQMKL----QQEDIDEAITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 99998754 567899999999999 899999999999999874 667777666544
No 15
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=1.4e-25 Score=248.40 Aligned_cols=422 Identities=12% Similarity=0.032 Sum_probs=291.3
Q ss_pred CcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHH--HhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCC
Q 005877 84 AINGSYYITISKMMSAVTNGDVRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGN 159 (672)
Q Consensus 84 ~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a--~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~ 159 (672)
.+.+++.+|..++. .+++++|+..|+++ .++.++.+++.+|.+|.. .+++++|+.+|++++. +++
T Consensus 24 ~a~~~~~~g~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~ 92 (537)
T 3fp2_A 24 YAVQLKNRGNHFFT-------AKNFNEAIKYYQYAIELDPNEPVFYSNISACYIS----TGDLEKVIEFTTKALEIKPDH 92 (537)
T ss_dssp HHHHHHHHHHHHHH-------TTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHH-------hccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCch
Confidence 35666777777664 78899999999995 456789999999999988 8899999999999876 788
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHc
Q 005877 160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK 239 (672)
Q Consensus 160 ~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~ 239 (672)
+.+++.+|.++...|++++|+..|+ ++...+.... .....+...+...+|+..+++....
T Consensus 93 ~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~-------------------~~~~~~~~~~~~~~a~~~~~~~l~~ 152 (537)
T 3fp2_A 93 SKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDG-------------------ASIEPMLERNLNKQAMKVLNENLSK 152 (537)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHH-HHC------------------------------CHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCCh-------------------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999995 5544332110 0111233444556788888776443
Q ss_pred C--CH---HHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCC----CcCCHHHHHHHHHH
Q 005877 240 G--NA---GAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE--PQSMEFLGEIYARGAG----VERNYTKALEWLTH 308 (672)
Q Consensus 240 ~--~~---~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~y~~g~g----~~~~~~~A~~~~~~ 308 (672)
. .. .........++.. .+...++..+.+..+... ......++.++....+ ..+++++|+..|++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~ 227 (537)
T 3fp2_A 153 DEGRGSQVLPSNTSLASFFGI-----FDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHS 227 (537)
T ss_dssp ------CCCCCHHHHHHHHHT-----SCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccccchHhHHHHHHHh-----cChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 1 00 0000111112222 144444444443332221 2233344444332000 02467777777777
Q ss_pred HHHcC--C-------HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCchhcHHHHHHH
Q 005877 309 AARQQ--L-------YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-EAGGHYNLGVMYYKGIGVKRDVKLACKY 378 (672)
Q Consensus 309 a~~~~--~-------~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 378 (672)
+++.. + ..++..+|.++.. .+++++|+.+|+++++.+ ++.+++.+|.++.. .+++++|+.+
T Consensus 228 ~l~~~p~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~ 298 (537)
T 3fp2_A 228 LLSANTVDDPLRENAALALCYTGIFHFL-----KNNLLDAQVLLQESINLHPTPNSYIFLALTLAD----KENSQEFFKF 298 (537)
T ss_dssp HHC--CCCHHHHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCC----SSCCHHHHHH
T ss_pred HHHHCCCcchhhHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHHHhcCCCchHHHHHHHHHHH----hcCHHHHHHH
Confidence 77542 3 2356677777765 568888888888887653 46778888888877 7888888888
Q ss_pred HHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 005877 379 FLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL- 453 (672)
Q Consensus 379 ~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~- 453 (672)
|+++++. .++.++..+|.++.. .+++++|+.+|+++++..+ +.++..+|.++...|++++|+.+++++++.
T Consensus 299 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 374 (537)
T 3fp2_A 299 FQKAVDLNPEYPPTYYHRGQMYFI----LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374 (537)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888763 467788888888887 7888888888888887764 557778888888888888888888888655
Q ss_pred -CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC--C------HHHHHHHHHHHHhCCCCC---
Q 005877 454 -GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--N------EHAALLIGDAYYYGRGTQ--- 521 (672)
Q Consensus 454 -g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~------~~a~~~lG~~y~~g~g~~--- 521 (672)
.+..++.++|.++.. .+++++|+.+++++++.. + ...++.+|.+|. ..
T Consensus 375 ~~~~~~~~~l~~~~~~----------------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~----~~~~~ 434 (537)
T 3fp2_A 375 PTLPEVPTFFAEILTD----------------RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILA----RQSSQ 434 (537)
T ss_dssp TTCTHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHH----HHHTC
T ss_pred CCChHHHHHHHHHHHH----------------hCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHH----HHhhc
Confidence 466778888888877 667888888888765432 1 233567788888 66
Q ss_pred -------CCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877 522 -------RDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK 578 (672)
Q Consensus 522 -------~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 578 (672)
+++++|+.+|+++++ ++++.++++||.+|.. .|++++|+++|+++++++|+..
T Consensus 435 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 435 DPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQ----MEKIDEAIELFEDSAILARTMD 496 (537)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC--CH
T ss_pred cchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCcH
Confidence 999999999999976 4789999999999988 8999999999999999998754
No 16
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=1.9e-24 Score=239.26 Aligned_cols=427 Identities=15% Similarity=0.055 Sum_probs=314.4
Q ss_pred cCCCCccccccCCCCCCcccccCC--CCCCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHH--HhCCChHHHHHHH
Q 005877 56 FGDSESMTEENLDPGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESA--AMEGDPHARSVLG 131 (672)
Q Consensus 56 ~~~~~~~~~~~~~~~~a~~~~~~~--~~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a--~~~~~~~a~~~Lg 131 (672)
+...+......+++++|+..|+++ .+|+++.+++.+|.+++. .+++++|+..|+++ .+++++.+++.+|
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~la 100 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYIS-------TGDLEKVIEFTTKALEIKPDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-------cCCHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 334455677889999999999999 557888999999999886 58999999999995 4578999999999
Q ss_pred HHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcc
Q 005877 132 FLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIH 209 (672)
Q Consensus 132 ~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~ 209 (672)
.+|.. .+++++|+..|+ ++. ++..... ...+...+...+|+..+++++...+....... |
T Consensus 101 ~~~~~----~g~~~~A~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~--~-------- 162 (537)
T 3fp2_A 101 SANES----LGNFTDAMFDLS-VLSLNGDFDGAS---IEPMLERNLNKQAMKVLNENLSKDEGRGSQVL--P-------- 162 (537)
T ss_dssp HHHHH----HTCHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC-------CCC--C--------
T ss_pred HHHHH----cCCHHHHHHHHH-HHhcCCCCChHH---HHHHHHHHHHHHHHHHHHHHHHhCcccccccc--c--------
Confidence 99999 999999999996 554 2322222 22444455668899999988765433211100 0
Q ss_pred cCchhhhhHhhhccCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCC---CcccCHHHHHHHHHHHHHc--CC----
Q 005877 210 NGAEENKGALRKSRGEDDEAFQILEYQAQKG--NAGAMYKIGLFYYFGLR---GLRRDRTKALMWFSKAADK--GE---- 278 (672)
Q Consensus 210 ~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~--~~~a~~~Lg~~y~~~~~---~~~~~~~~A~~~~~~a~~~--~~---- 278 (672)
.......+....+.+.++..+.+..+.. .......++.++..... ...+++++|+..|+++++. ++
T Consensus 163 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~ 239 (537)
T 3fp2_A 163 ---SNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLR 239 (537)
T ss_dssp ---CHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHH
T ss_pred ---hHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhh
Confidence 0111222334444555554444433332 22234444444432200 0013788888888888764 34
Q ss_pred ---HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCH
Q 005877 279 ---PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEA 352 (672)
Q Consensus 279 ---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~ 352 (672)
+.++..+|.++.. .+++++|+.+|+++++.. .+.++..+|.++.. .+++++|+.+|+++++. +++
T Consensus 240 ~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~ 310 (537)
T 3fp2_A 240 ENAALALCYTGIFHFL----KNNLLDAQVLLQESINLHPTPNSYIFLALTLAD-----KENSQEFFKFFQKAVDLNPEYP 310 (537)
T ss_dssp HHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCC-----SSCCHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHh----cccHHHHHHHHHHHHhcCCCchHHHHHHHHHHH-----hcCHHHHHHHHHHHhccCCCCH
Confidence 3468889999998 999999999999999753 47889999999975 67999999999999875 589
Q ss_pred HHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHH
Q 005877 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLS 428 (672)
Q Consensus 353 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~ 428 (672)
.+++.+|.+|.. .+++++|+.+|+++++. .++.++..+|.++.. .+++++|+.+|+++++..+ +.++.
T Consensus 311 ~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 382 (537)
T 3fp2_A 311 PTYYHRGQMYFI----LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK----QGKFTESEAFFNETKLKFPTLPEVPT 382 (537)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 999999999999 99999999999999875 467899999999998 8999999999999999874 56889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC--C------HHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHH-
Q 005877 429 RWALESYLKGDVGKAFLLYSRMAELG--Y------EVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS- 499 (672)
Q Consensus 429 ~lg~~~~~~g~~~~A~~~~~~a~~~g--~------~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~- 499 (672)
.+|.++...|++++|+.+|+++++.. + .....+.|.++...+.. .......+++++|+.+++++.
T Consensus 383 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~A~~~~~~a~~ 456 (537)
T 3fp2_A 383 FFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ------DPTQLDEEKFNAAIKLLTKACE 456 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhc------cchhhhHhHHHHHHHHHHHHHH
Confidence 99999999999999999999997654 1 22345667777661000 000111289999999999875
Q ss_pred -hCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 005877 500 -EQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ 537 (672)
Q Consensus 500 -~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~ 537 (672)
.++++.+++.+|.+|. ..+++++|+.+|+++++.
T Consensus 457 ~~p~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 457 LDPRSEQAKIGLAQLKL----QMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HCTTCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHH----HhccHHHHHHHHHHHHHh
Confidence 4667999999999999 899999999999999875
No 17
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=2.9e-25 Score=241.91 Aligned_cols=309 Identities=12% Similarity=0.033 Sum_probs=208.4
Q ss_pred CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh-----------CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 005877 122 GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE-----------GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIA 190 (672)
Q Consensus 122 ~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~-----------~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~ 190 (672)
..+..+..||.+|.. .|++++|+++|++|.+ +....++.++|.+|...|++++|+.+|++++++.
T Consensus 49 ~~a~~yn~Lg~~~~~----~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 49 FKATMCNLLAYLKHL----KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC 124 (472)
T ss_dssp -CCHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 346678899999998 9999999999999964 2445788899999999999999999999999876
Q ss_pred HhhhhccCCCCcccchhcccCchhhhhHh--hhccCChHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCcccCHHHH
Q 005877 191 VNSFLISKDSPVIEPIRIHNGAEENKGAL--RKSRGEDDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRGLRRDRTKA 266 (672)
Q Consensus 191 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~g~~~~Ai~~~~~aa~--~~~~~a~~~Lg~~y~~~~~~~~~~~~~A 266 (672)
+.... +.++... .+..++|.. ....+++++|+.+|+++.+ +.++.++..+|.+++.. +..++.++|
T Consensus 125 ~~~~~--~~~~~~~------~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l--~~~~~~~~a 194 (472)
T 4g1t_A 125 EKFSS--PYRIESP------ELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL--DNWPPSQNA 194 (472)
T ss_dssp HHSCC--SSCCCCH------HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH--HHSCCCCCT
T ss_pred Hhccc--ccchhhH------HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--cCchHHHHH
Confidence 54321 1111111 112234433 3455678999999999854 46889999988887543 222467788
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHH
Q 005877 267 LMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEY 342 (672)
Q Consensus 267 ~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~ 342 (672)
++.|+++++ +.++.++..+|..+..-....+++++|+.+|+++++. .++.++..+|.+|.. .+++++|+.+
T Consensus 195 l~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~-----~~~~~~A~~~ 269 (472)
T 4g1t_A 195 IDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR-----KDEPDKAIEL 269 (472)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-----TTCHHHHHHH
T ss_pred HHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH-----cCchHHHHHH
Confidence 999999876 4678888888877655333367888999999998865 478888999999986 5799999999
Q ss_pred HHHHHhC--CCHHHHHHHHHHHHcCC---------------CchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCC
Q 005877 343 FEKAADN--EEAGGHYNLGVMYYKGI---------------GVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVG 403 (672)
Q Consensus 343 ~~~a~~~--~~~~a~~~Lg~~y~~g~---------------g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g 403 (672)
|+++++. +++.+++++|.+|.... .....+++|+..|+++.+. .+..++..+|.+|..
T Consensus 270 ~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~--- 346 (472)
T 4g1t_A 270 LKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHAL--- 346 (472)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHH---
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHH---
Confidence 9999875 57888999998885400 0112345555556555543 234555566666655
Q ss_pred ccCCHHHHHHHHHHHHHcCChh-----HHHHHHHH-HHhcCCHHHHHHHHHHHHHc
Q 005877 404 LKKNLHMATALYKLVAERGPWS-----SLSRWALE-SYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 404 ~~~~~~~A~~~~~~a~~~~~~~-----a~~~lg~~-~~~~g~~~~A~~~~~~a~~~ 453 (672)
.+++++|+.+|+++++..+.. .+..+|.. .+..|++++|+.+|+++++.
T Consensus 347 -~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 347 -ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp -TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred -hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 566666666666666554221 12333332 34555666666666666554
No 18
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=1.4e-23 Score=226.76 Aligned_cols=355 Identities=15% Similarity=0.091 Sum_probs=224.6
Q ss_pred HHHHHHHH--HHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 005877 110 EATSEVES--AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAE 185 (672)
Q Consensus 110 ~A~~~~~~--a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~ 185 (672)
.+...+.+ ..++.++.+++.+|..|.. .+++++|+.+|++++. ++++.+++.+|.+|...|++++|+.+|++
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLA----AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44444444 3455678888888888888 8889999999988876 67888888899999888888888888888
Q ss_pred HHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHH
Q 005877 186 LAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTK 265 (672)
Q Consensus 186 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~ 265 (672)
+++. .+.++.+++.+|.+|... +++++
T Consensus 86 al~~------------------------------------------------~p~~~~~~~~l~~~~~~~-----g~~~~ 112 (450)
T 2y4t_A 86 VIQL------------------------------------------------KMDFTAARLQRGHLLLKQ-----GKLDE 112 (450)
T ss_dssp HHHH------------------------------------------------CTTCHHHHHHHHHHHHHT-----TCHHH
T ss_pred HHhc------------------------------------------------CCCcHHHHHHHHHHHHHc-----CCHHH
Confidence 8763 234567777788877776 37888
Q ss_pred HHHHHHHHHHcC--CH---HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHH
Q 005877 266 ALMWFSKAADKG--EP---QSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAK 340 (672)
Q Consensus 266 A~~~~~~a~~~~--~~---~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~ 340 (672)
|+.+|+++++.. ++ .++..++.++.. .....+|.++.. .+++++|+
T Consensus 113 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------------~~~~~~a~~~~~-----~~~~~~A~ 163 (450)
T 2y4t_A 113 AEDDFKKVLKSNPSENEEKEAQSQLIKSDEM------------------------QRLRSQALNAFG-----SGDYTAAI 163 (450)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHH-----HTCHHHHH
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHH------------------------HHHHHHHHHHHH-----cCCHHHHH
Confidence 888888877642 33 444444333211 112223333332 23444444
Q ss_pred HHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHH
Q 005877 341 EYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYK 416 (672)
Q Consensus 341 ~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~ 416 (672)
.+|+++++. +++.+++.+|.+|.. .+++++|+.+|+++++ +.++.+++.+|.+|.. .+++++|+.+|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 235 (450)
T 2y4t_A 164 AFLDKILEVCVWDAELRELRAECFIK----EGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQ----LGDHELSLSEVR 235 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHH----TTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHH----TTCHHHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Confidence 444444433 244444455555544 4455555555554443 2344445555555544 455555555555
Q ss_pred HHHHcCChh--H------------HHHHHHHHHhcCCHHHHHHHHHHHHHcC--C----HHHHHHHHHHHHHhCCCCccc
Q 005877 417 LVAERGPWS--S------------LSRWALESYLKGDVGKAFLLYSRMAELG--Y----EVAQSNAAWILDKYGEGSMCM 476 (672)
Q Consensus 417 ~a~~~~~~~--a------------~~~lg~~~~~~g~~~~A~~~~~~a~~~g--~----~~a~~nla~~l~~~~~~~~~~ 476 (672)
++++..+.. . ...+|..+...|++++|+.+|+++++.. + ...+.++|.++.+
T Consensus 236 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~-------- 307 (450)
T 2y4t_A 236 ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSK-------- 307 (450)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHT--------
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH--------
Confidence 554443221 1 1233777777788888888888776653 3 2356677777766
Q ss_pred CCCCCCCchHhHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHH---
Q 005877 477 GESGFCTDAERHQCAHSLWWQAS--EQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYM--- 549 (672)
Q Consensus 477 ~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~--- 549 (672)
.+++++|+.++++++ .++++.+++.+|.+|. ..+++++|+.+|+++++. +++.++..||.+
T Consensus 308 --------~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 308 --------DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL----IEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375 (450)
T ss_dssp --------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred --------CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 667788888888765 4667889999999999 889999999999999774 788899999954
Q ss_pred ---------HHc-CCCCCCCHHHHHHHHHH-HHhcCCCCc
Q 005877 550 ---------HEH-GQGLPLDLHLAKRYYDQ-ALEVDPAAK 578 (672)
Q Consensus 550 ---------y~~-g~g~~~d~~~A~~~~~~-A~~~~~~~~ 578 (672)
|.. |.....+.+++++.|++ +++..|+..
T Consensus 376 ~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 376 LKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp HHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGC
T ss_pred hhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCC
Confidence 322 22223467888998986 788888865
No 19
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.93 E-value=5.6e-24 Score=231.70 Aligned_cols=372 Identities=12% Similarity=0.022 Sum_probs=266.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHH
Q 005877 159 NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ 238 (672)
Q Consensus 159 ~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~ 238 (672)
....+..||.+|...|++++|+++|++++++.+........... ..+..++|.++..+|++++|+.+++++.+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~-------~~~~~nla~~y~~~g~~~~A~~~~~ka~~ 122 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRS-------LVTWGNYAWVYYHMGRLSDVQIYVDKVKH 122 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTT-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHH-------HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 34678889999999999999999999999976543322111100 12345799999999999999999999754
Q ss_pred c----------CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHH
Q 005877 239 K----------GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWL 306 (672)
Q Consensus 239 ~----------~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 306 (672)
. ..+.++..+|..+...+ .+++++|+++|+++++ ++++.++..+|.++.. .+..++.++|+..|
T Consensus 123 i~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~-l~~~~~~~~al~~~ 198 (472)
T 4g1t_A 123 VCEKFSSPYRIESPELDCEEGWTRLKCG---GNQNERAKVCFEKALEKKPKNPEFTSGLAIASYR-LDNWPPSQNAIDPL 198 (472)
T ss_dssp HHHHSCCSSCCCCHHHHHHHHHHHHHHC---TTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-HHHSCCCCCTHHHH
T ss_pred HhHhcccccchhhHHHHHHHHHHHHHHc---cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hcCchHHHHHHHHH
Confidence 2 35788888888776532 1489999999999987 5789999999988543 00146778899999
Q ss_pred HHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHH
Q 005877 307 THAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVA 382 (672)
Q Consensus 307 ~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 382 (672)
+++++. .++.++..+|..+..- +...+++++|+.+|+++++. .++.++.++|.+|.. .+++++|+..|+++
T Consensus 199 ~~al~l~p~~~~~~~~l~~~~~~~-~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~a 273 (472)
T 4g1t_A 199 RQAIRLNPDNQYLKVLLALKLHKM-REEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR----KDEPDKAIELLKKA 273 (472)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHC-C------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH----TTCHHHHHHHHHHH
T ss_pred HHHhhcCCcchHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH----cCchHHHHHHHHHH
Confidence 999875 4788888898776531 12345889999999999876 589999999999999 99999999999999
Q ss_pred HH--cCCHHHHHHHHHHHHcCC---------------CccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHH
Q 005877 383 AN--AGHQKAFYQLAKMFHTGV---------------GLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKA 443 (672)
Q Consensus 383 ~~--~~~~~a~~~L~~~y~~g~---------------g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A 443 (672)
++ +.++.+++++|.+|..-. .....+++|+.+|+++.+..+ ..++..+|.++...|++++|
T Consensus 274 l~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A 353 (472)
T 4g1t_A 274 LEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEA 353 (472)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHH
T ss_pred HHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHH
Confidence 87 457889999999875310 012457889999999998875 45789999999999999999
Q ss_pred HHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 005877 444 FLLYSRMAELGYEV-----AQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGR 518 (672)
Q Consensus 444 ~~~~~~a~~~g~~~-----a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~ 518 (672)
+.+|+++++..... .+.+++.++.. ..+++++|+.+|+++++..+....
T Consensus 354 ~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~Ai~~y~kal~i~~~~~~----------- 407 (472)
T 4g1t_A 354 EYYFQKEFSKELTPVAKQLLHLRYGNFQLY---------------QMKCEDKAIHHFIEGVKINQKSRE----------- 407 (472)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHH---------------TSSCHHHHHHHHHHHHHSCCCCHH-----------
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHH---------------HCCCHHHHHHHHHHHHhcCcccHH-----------
Confidence 99999998875321 23455544322 145789999999998776542110
Q ss_pred CCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877 519 GTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA 577 (672)
Q Consensus 519 g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 577 (672)
..+....+...++++++ ++++.++++||.+|.. .|++++|+++|++|++++|..
T Consensus 408 -~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~----~g~~~~A~~~y~kALe~~~~~ 463 (472)
T 4g1t_A 408 -KEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQEL----NEKMQQADEDSERGLESGSLI 463 (472)
T ss_dssp -HHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHH----HHHCC----------------
T ss_pred -HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCC
Confidence 11233445566777765 4788999999999987 899999999999999998764
No 20
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=3.5e-22 Score=208.08 Aligned_cols=312 Identities=14% Similarity=0.060 Sum_probs=195.4
Q ss_pred ChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCC
Q 005877 123 DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDS 200 (672)
Q Consensus 123 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~ 200 (672)
++++++.+|..|.. .+++++|+.+|++++. +.++.+++.+|.++...|++++|+.+|+++++.
T Consensus 2 ~~~~~~~~~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------- 66 (359)
T 3ieg_A 2 DVEKHLELGKKLLA----AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL----------- 66 (359)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------
T ss_pred cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------
Confidence 45677888888887 7888888888888765 577888888888888888888888888887653
Q ss_pred CcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc----
Q 005877 201 PVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK---- 276 (672)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~---- 276 (672)
.+.++.+++.+|.++... +++++|+.+|+++++.
T Consensus 67 -------------------------------------~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~ 104 (359)
T 3ieg_A 67 -------------------------------------KMDFTAARLQRGHLLLKQ-----GKLDEAEDDFKKVLKSNPSE 104 (359)
T ss_dssp -------------------------------------CTTCHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHTSCCCH
T ss_pred -------------------------------------CCCcchHHHHHHHHHHHc-----CChHHHHHHHHHHHhcCCcc
Confidence 234667777888888777 3788888888887764
Q ss_pred -CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHH
Q 005877 277 -GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAG 353 (672)
Q Consensus 277 -~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~ 353 (672)
.++.++..++.++.. .....+|.++.. .+++++|+.+|+++++. +++.
T Consensus 105 ~~~~~~~~~l~~~~~~------------------------~~~~~~a~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~ 155 (359)
T 3ieg_A 105 QEEKEAESQLVKADEM------------------------QRLRSQALDAFD-----GADYTAAITFLDKILEVCVWDAE 155 (359)
T ss_dssp HHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cChHHHHHHHHHHHHH------------------------HHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhCCCchH
Confidence 334455555332211 112223333332 23444444444444432 2444
Q ss_pred HHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh-------
Q 005877 354 GHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW------- 424 (672)
Q Consensus 354 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~------- 424 (672)
++..+|.++.. .+++++|+..|+++++. .++.+++.+|.++.. .+++++|+.+|+++++..+.
T Consensus 156 ~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (359)
T 3ieg_A 156 LRELRAECFIK----EGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQ----LGDHELSLSEVRECLKLDQDHKRCFAH 227 (359)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCccchHHHHH
Confidence 44444544444 44455555555544432 234444455554444 44555555555555444322
Q ss_pred -------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHH
Q 005877 425 -------SSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQ 497 (672)
Q Consensus 425 -------~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 497 (672)
.....+|..+...|++++|+..|+++++........
T Consensus 228 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------------------------------------- 270 (359)
T 3ieg_A 228 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEY------------------------------------- 270 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHH-------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHH-------------------------------------
Confidence 123345778888899999999999987754221100
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCC
Q 005877 498 ASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDP 575 (672)
Q Consensus 498 a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 575 (672)
...++..+|.+|. ..+++++|+.+|+++++ ++++.+++++|.+|.. .|++++|+.+|+++++++|
T Consensus 271 -----~~~~~~~la~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 271 -----TVRSKERICHCFS----KDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI----EEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp -----HHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCT
T ss_pred -----HHHHHHHHHHHHH----HccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Confidence 0123456777777 67788888888888766 3577788888888776 7788888888888888877
Q ss_pred CCc
Q 005877 576 AAK 578 (672)
Q Consensus 576 ~~~ 578 (672)
+..
T Consensus 338 ~~~ 340 (359)
T 3ieg_A 338 NDQ 340 (359)
T ss_dssp TCH
T ss_pred CCh
Confidence 653
No 21
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=2.5e-22 Score=216.99 Aligned_cols=321 Identities=11% Similarity=0.042 Sum_probs=238.0
Q ss_pred CCCCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh-
Q 005877 80 IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE- 156 (672)
Q Consensus 80 ~~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~- 156 (672)
.+|.++.+++.+|..++. .+++++|+..|+++. .+.++.+++.+|.+|.. .+++++|+.+|+++++
T Consensus 21 ~~p~~~~~~~~~~~~~~~-------~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLA-------AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLA----MGKSKAALPDLTKVIQL 89 (450)
T ss_dssp --CHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhc
Confidence 345667778888888775 589999999999955 56889999999999999 9999999999999987
Q ss_pred -CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHH
Q 005877 157 -GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEY 235 (672)
Q Consensus 157 -~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~ 235 (672)
++++.++..+|.+|...|++++|+.+|+++++..+.. ..+...+..
T Consensus 90 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------------------------------~~~~~~~~~ 136 (450)
T 2y4t_A 90 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE---------------------------------NEEKEAQSQ 136 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCH---------------------------------HHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------------------------hhhHHHHHH
Confidence 6889999999999999999999999999987643211 000011111
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-
Q 005877 236 QAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ- 312 (672)
Q Consensus 236 aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~- 312 (672)
.+........+.+|.++... +++++|+.+|+++++ +.++.++..+|.+|.. .+++++|+.+|+++++.
T Consensus 137 l~~~~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 207 (450)
T 2y4t_A 137 LIKSDEMQRLRSQALNAFGS-----GDYTAAIAFLDKILEVCVWDAELRELRAECFIK----EGEPRKAISDLKAASKLK 207 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhC
Confidence 11112233455667777766 388888888888776 3567788888888887 78888888888887754
Q ss_pred -CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHH------------HHHHHcCCCchhcHHHHHH
Q 005877 313 -QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNL------------GVMYYKGIGVKRDVKLACK 377 (672)
Q Consensus 313 -~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~L------------g~~y~~g~g~~~~~~~A~~ 377 (672)
+++.++..+|.+|.. .|++++|+.+|+++++. +++.++..+ |.++.. .+++++|+.
T Consensus 208 ~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~ 278 (450)
T 2y4t_A 208 NDNTEAFYKISTLYYQ-----LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR----DGRYTDATS 278 (450)
T ss_dssp CSCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH----HTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHH
Confidence 567778888888875 56888888888887665 345554444 777777 788888888
Q ss_pred HHHHHHHcC--C----HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005877 378 YFLVAANAG--H----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSR 449 (672)
Q Consensus 378 ~~~~A~~~~--~----~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~ 449 (672)
+|+++++.. + ...+..+|.++.. .+++++|+.+++++++..| +.++..+|.++...|++++|+.+|++
T Consensus 279 ~~~~~l~~~p~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 279 KYESVMKTEPSIAEYTVRSKERICHCFSK----DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp HHHHHHHHCCSSHHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 888887643 3 3467778888876 7888888888888877653 56777888888888888888888888
Q ss_pred HHHc--CCHHHHHHHHHHH
Q 005877 450 MAEL--GYEVAQSNAAWIL 466 (672)
Q Consensus 450 a~~~--g~~~a~~nla~~l 466 (672)
+++. +++.++..++.+.
T Consensus 355 al~~~p~~~~~~~~l~~~~ 373 (450)
T 2y4t_A 355 AQEHNENDQQIREGLEKAQ 373 (450)
T ss_dssp HHTTSSSCHHHHHHHHHHH
T ss_pred HHHhCcchHHHHHHHHHHH
Confidence 8654 4666666666554
No 22
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=3.3e-22 Score=208.28 Aligned_cols=284 Identities=13% Similarity=0.073 Sum_probs=215.1
Q ss_pred CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHH
Q 005877 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYS 316 (672)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~ 316 (672)
++++++.+|..++.. +++++|+..|+++++ +.++.+++.+|.+|.. .+++++|+.+|+++++. +++.
T Consensus 2 ~~~~~~~~~~~~~~~-----g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~ 72 (359)
T 3ieg_A 2 DVEKHLELGKKLLAA-----GQLADALSQFHAAVDGDPDNYIAYYRRATVFLA----MGKSKAALPDLTKVIALKMDFTA 72 (359)
T ss_dssp HHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCcch
Confidence 456667777777766 377777777777765 3566777777777777 77777777777777654 3666
Q ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC-----CHHHHHHH------------HHHHHcCCCchhcHHHHHHHH
Q 005877 317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-----EAGGHYNL------------GVMYYKGIGVKRDVKLACKYF 379 (672)
Q Consensus 317 a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~-----~~~a~~~L------------g~~y~~g~g~~~~~~~A~~~~ 379 (672)
++..+|.+|.. .|++++|+.+|+++++.. ++.++..+ |.++.. .+++++|+.+|
T Consensus 73 ~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~ 143 (359)
T 3ieg_A 73 ARLQRGHLLLK-----QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFD----GADYTAAITFL 143 (359)
T ss_dssp HHHHHHHHHHH-----HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHH
T ss_pred HHHHHHHHHHH-----cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHH----ccCHHHHHHHH
Confidence 77777777764 457777777777776653 33444444 788888 89999999999
Q ss_pred HHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-
Q 005877 380 LVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG- 454 (672)
Q Consensus 380 ~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g- 454 (672)
+++++ +.++.++..+|.++.. .+++++|+.+++++++..| +.++..+|.++...|++++|+..|+++++..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 219 (359)
T 3ieg_A 144 DKILEVCVWDAELRELRAECFIK----EGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219 (359)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhCCCchHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 99987 4578999999999998 8999999999999998874 6788999999999999999999999998764
Q ss_pred -CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 005877 455 -YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMH 533 (672)
Q Consensus 455 -~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~ 533 (672)
+..+...+..+. .......+|.++. ..+++++|+.+|++
T Consensus 220 ~~~~~~~~~~~~~------------------------------------~~~~~~~~a~~~~----~~~~~~~A~~~~~~ 259 (359)
T 3ieg_A 220 DHKRCFAHYKQVK------------------------------------KLNKLIESAEELI----RDGRYTDATSKYES 259 (359)
T ss_dssp TCHHHHHHHHHHH------------------------------------HHHHHHHHHHHHH----HTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHH------------------------------------HHHHHHHHHHHHH----HcCCHHHHHHHHHH
Confidence 444332222110 2345677899999 88999999999999
Q ss_pred HHhc--CCH----HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH
Q 005877 534 ARSQ--SNA----QAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPVTLALTSLWIR 591 (672)
Q Consensus 534 A~~~--~~~----~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 591 (672)
+++. .++ .++..+|.+|.. .+++++|+.+|+++++.+|+... ....+...+..
T Consensus 260 ~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 318 (359)
T 3ieg_A 260 VMKTEPSVAEYTVRSKERICHCFSK----DEKPVEAIRICSEVLQMEPDNVN-ALKDRAEAYLI 318 (359)
T ss_dssp HHHHCCSSHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHH
T ss_pred HHhcCCCchHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCcccHH-HHHHHHHHHHH
Confidence 9874 444 457789999987 89999999999999999987542 33344444443
No 23
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=1.6e-20 Score=193.35 Aligned_cols=274 Identities=16% Similarity=0.104 Sum_probs=195.6
Q ss_pred CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCC
Q 005877 122 GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKD 199 (672)
Q Consensus 122 ~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~ 199 (672)
.+++....+|..+.. .+++++|+.+|+++.. +.++.++..++.++...|++++|+.+++++++.
T Consensus 20 ~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---------- 85 (330)
T 3hym_B 20 ENLDVVVSLAERHYY----NCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL---------- 85 (330)
T ss_dssp CCCTTHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----------
T ss_pred hhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh----------
Confidence 445555555555555 5555555555555543 344555555555555555555555555555442
Q ss_pred CCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--C
Q 005877 200 SPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--G 277 (672)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~ 277 (672)
.+.++.+++.+|.++...+ +++++|+.+|+++++. .
T Consensus 86 --------------------------------------~~~~~~~~~~l~~~~~~~~----~~~~~A~~~~~~a~~~~~~ 123 (330)
T 3hym_B 86 --------------------------------------YPSNPVSWFAVGCYYLMVG----HKNEHARRYLSKATTLEKT 123 (330)
T ss_dssp --------------------------------------CTTSTHHHHHHHHHHHHSC----SCHHHHHHHHHHHHTTCTT
T ss_pred --------------------------------------CcCCHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHhCCc
Confidence 2346677778888777662 2778888888887763 5
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHH
Q 005877 278 EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAG 353 (672)
Q Consensus 278 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~ 353 (672)
++.++..+|.+|.. .+++++|+..|+++++. ++..++..+|.+|.. .+++++|+.+|+++++. .++.
T Consensus 124 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~al~~~~~~~~ 194 (330)
T 3hym_B 124 YGPAWIAYGHSFAV----ESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL-----TNNSKLAERFFSQALSIAPEDPF 194 (330)
T ss_dssp CTHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH-----TTCHHHHHHHHHHHHTTCTTCHH
T ss_pred cHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHhCCCChH
Confidence 67778888888887 78888888888888764 356777778888875 56888888888888775 4677
Q ss_pred HHHHHHHHHHcCCCchhcHHHHHHHHHHHHH-----------cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC
Q 005877 354 GHYNLGVMYYKGIGVKRDVKLACKYFLVAAN-----------AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG 422 (672)
Q Consensus 354 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~-----------~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~ 422 (672)
+++.+|.++.. .+++++|+.+|+++++ ...+.++..+|.++.. .+++++|+.+|+++++..
T Consensus 195 ~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~ 266 (330)
T 3hym_B 195 VMHEVGVVAFQ----NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK----LKKYAEALDYHRQALVLI 266 (330)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHH----cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhC
Confidence 88888888888 7888888888888876 3345788888888887 788888888888888776
Q ss_pred C--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Q 005877 423 P--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDK 468 (672)
Q Consensus 423 ~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~ 468 (672)
+ +.++..+|.++...|++++|+.+|+++++. +++.+...++.++..
T Consensus 267 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 316 (330)
T 3hym_B 267 PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEM 316 (330)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHH
Confidence 3 567888888888888888888888888654 578888888887743
No 24
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=1.5e-20 Score=193.63 Aligned_cols=272 Identities=14% Similarity=0.107 Sum_probs=231.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CC
Q 005877 239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QL 314 (672)
Q Consensus 239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~ 314 (672)
+.+++..+.+|..++.. +++++|+++|+++++. .++.++..++.++.. .+++++|+.+++++++. .+
T Consensus 19 ~~~~~~~~~~a~~~~~~-----g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~ 89 (330)
T 3hym_B 19 QENLDVVVSLAERHYYN-----CDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVE----LNKANELFYLSHKLVDLYPSN 89 (330)
T ss_dssp -CCCTTHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTS
T ss_pred hhhHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHH----hhhHHHHHHHHHHHHHhCcCC
Confidence 35778888999999888 4999999999998874 567788888888888 89999999999999875 47
Q ss_pred HHHHHHHHHHHHcCCCCCcC-CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHH
Q 005877 315 YSAYNGIGYLYVKGYGVEKK-NYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQK 389 (672)
Q Consensus 315 ~~a~~~Lg~~y~~g~g~~~~-~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~ 389 (672)
+.++..+|.++.. .+ ++++|+.+|+++++. .++.+++.+|.++.. .+++++|+..|+++++. ++..
T Consensus 90 ~~~~~~l~~~~~~-----~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~ 160 (330)
T 3hym_B 90 PVSWFAVGCYYLM-----VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAV----ESEHDQAMAAYFTAAQLMKGCHL 160 (330)
T ss_dssp THHHHHHHHHHHH-----SCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHTTTCSH
T ss_pred HHHHHHHHHHHHH-----hhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhccccHH
Confidence 8899999999986 56 899999999999876 478899999999999 99999999999999874 4568
Q ss_pred HHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----------CCH
Q 005877 390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL-----------GYE 456 (672)
Q Consensus 390 a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~-----------g~~ 456 (672)
++..+|.+|.. .+++++|+.+|+++++..+ +.++..+|.++...|++++|+.+++++++. ...
T Consensus 161 ~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 236 (330)
T 3hym_B 161 PMLYIGLEYGL----TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE 236 (330)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCC
T ss_pred HHHHHHHHHHH----HhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHH
Confidence 88999999998 8999999999999998874 567889999999999999999999999773 446
Q ss_pred HHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 005877 457 VAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE--QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHA 534 (672)
Q Consensus 457 ~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A 534 (672)
.++.++|.++.. .+++++|+.+++++++ +.++.+++.+|.+|. ..+++++|+.+|+++
T Consensus 237 ~~~~~la~~~~~----------------~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 237 PLLNNLGHVCRK----------------LKKYAEALDYHRQALVLIPQNASTYSAIGYIHS----LMGNFENAVDYFHTA 296 (330)
T ss_dssp HHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH----HHTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH----------------hcCHHHHHHHHHHHHhhCccchHHHHHHHHHHH----HhccHHHHHHHHHHH
Confidence 788888888877 6678888888887654 456788888888888 788888888888888
Q ss_pred Hhc--CCHHHHHHHHHHHHc
Q 005877 535 RSQ--SNAQAMFNLGYMHEH 552 (672)
Q Consensus 535 ~~~--~~~~a~~~Lg~~y~~ 552 (672)
++. +++.++..||.+++.
T Consensus 297 l~~~p~~~~~~~~l~~~~~~ 316 (330)
T 3hym_B 297 LGLRRDDTFSVTMLGHCIEM 316 (330)
T ss_dssp TTTCSCCHHHHHHHHHHHHT
T ss_pred HccCCCchHHHHHHHHHHHH
Confidence 764 678888888888754
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=1.2e-20 Score=197.74 Aligned_cols=270 Identities=12% Similarity=0.056 Sum_probs=183.3
Q ss_pred CHHHHHH-HHHHHHHc--CC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCC
Q 005877 262 DRTKALM-WFSKAADK--GE----PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVE 332 (672)
Q Consensus 262 ~~~~A~~-~~~~a~~~--~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~ 332 (672)
++++|++ .|++++.. .+ ..+++.+|.++.. .+++++|+.+|+++++. +++.++..+|.+|..
T Consensus 40 ~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----- 110 (368)
T 1fch_A 40 DYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQ----EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE----- 110 (368)
T ss_dssp ------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHH----TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH-----
T ss_pred HHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----
Confidence 5666666 66655442 12 3445666666666 66666666666666654 355666666666654
Q ss_pred cCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCC--HHHH----------------H
Q 005877 333 KKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGH--QKAF----------------Y 392 (672)
Q Consensus 333 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~--~~a~----------------~ 392 (672)
.|++++|+.+|+++++. +++.+++.+|.+|.. .+++++|+.+|+++++..+ .... .
T Consensus 111 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (368)
T 1fch_A 111 NEQELLAISALRRCLELKPDNQTALMALAVSFTN----ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKR 186 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSTTTGGGCC---------------C
T ss_pred CcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHH
Confidence 44666666666666554 356666666666666 6666666666666655332 1111 1
Q ss_pred HHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 005877 393 QLAKMFHTGVGLKKNLHMATALYKLVAERGPW----SSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWIL 466 (672)
Q Consensus 393 ~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~----~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l 466 (672)
.++.++ . .+++++|+.+|+++++..|. .++..+|.++...|++++|+.+|+++++. .++.++.++|.++
T Consensus 187 ~~~~~~-~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 261 (368)
T 1fch_A 187 ILGSLL-S----DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATL 261 (368)
T ss_dssp TTHHHH-H----HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHh-h----cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 455555 3 57788888888888777644 45677788888888888888888888654 4677788888887
Q ss_pred HHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CC---
Q 005877 467 DKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE--QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SN--- 539 (672)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~--- 539 (672)
.. .+++++|+.+++++++ ++++.+++++|.+|. ..+++++|+.+|+++++. ++
T Consensus 262 ~~----------------~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~~~~~~~ 321 (368)
T 1fch_A 262 AN----------------GNQSEEAVAAYRRALELQPGYIRSRYNLGISCI----NLGAHREAVEHFLEALNMQRKSRGP 321 (368)
T ss_dssp HH----------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHHTC---
T ss_pred HH----------------cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHhCCCCCCc
Confidence 77 6678888888887644 567888999999999 889999999999999763 44
Q ss_pred --------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhc
Q 005877 540 --------AQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEV 573 (672)
Q Consensus 540 --------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 573 (672)
+.++.+||.+|.. .|++++|..+++++++.
T Consensus 322 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 322 RGEGGAMSENIWSTLRLALSM----LGQSDAYGAADARDLST 359 (368)
T ss_dssp ---CCCCCHHHHHHHHHHHHH----HTCGGGHHHHHTTCHHH
T ss_pred cccccchhhHHHHHHHHHHHH----hCChHhHHHhHHHHHHH
Confidence 7899999999987 88999999998877653
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=2.5e-19 Score=187.77 Aligned_cols=292 Identities=15% Similarity=0.105 Sum_probs=190.6
Q ss_pred cccCCCCCCcc-cccCCCC--CC----CcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh--CCChHHHHHHHHHh
Q 005877 64 EENLDPGSWSP-VFEPSID--PG----AINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAM--EGDPHARSVLGFLY 134 (672)
Q Consensus 64 ~~~~~~~~a~~-~~~~~~~--~~----~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y 134 (672)
...+++++|+. .|+++.. +. .....+.+|..++. .+++++|+..|+++.. +.++.+++.+|.+|
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 108 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQ-------EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQ 108 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHH-------TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34568888888 7776633 32 25668889988875 5899999999999665 57899999999999
Q ss_pred hcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCc
Q 005877 135 GMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGA 212 (672)
Q Consensus 135 ~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 212 (672)
.. .+++++|+.+|++++. ++++.++..+|.+|...|++++|+.+|+++++..+.......
T Consensus 109 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------------- 170 (368)
T 1fch_A 109 AE----NEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT-------------- 170 (368)
T ss_dssp HH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC--------------
T ss_pred HH----CcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH--------------
Confidence 99 9999999999999986 689999999999999999999999999999886543211100
Q ss_pred hhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--C--CHHHHHHHHHH
Q 005877 213 EENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--G--EPQSMEFLGEI 288 (672)
Q Consensus 213 ~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~--~~~a~~~Lg~~ 288 (672)
.. +.. ............+|.++ .. +++++|+.+|+++++. . ++.++..+|.+
T Consensus 171 --~~-------~~~---------~~~~~~~~~~~~~~~~~-~~-----~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~ 226 (368)
T 1fch_A 171 --PA-------EEG---------AGGAGLGPSKRILGSLL-SD-----SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 226 (368)
T ss_dssp ---------------------------------CTTHHHH-HH-----HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred --HH-------HHH---------hhhhcccHHHHHHHHHh-hc-----ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHH
Confidence 00 000 00001112223444444 22 2666666666666653 3 45666666776
Q ss_pred HHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc
Q 005877 289 YARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYK 364 (672)
Q Consensus 289 y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~ 364 (672)
|.. .+++++|+.+|+++++. .++.++..+|.++.. .|++++|+.+|+++++. +++.+++++|.+|..
T Consensus 227 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 227 FNL----SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN-----GNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN 297 (368)
T ss_dssp HHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHH----cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 666 66677777777766653 356666677776664 45677777777776654 356667777777776
Q ss_pred CCCchhcHHHHHHHHHHHHHc--CC-----------HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHc
Q 005877 365 GIGVKRDVKLACKYFLVAANA--GH-----------QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER 421 (672)
Q Consensus 365 g~g~~~~~~~A~~~~~~A~~~--~~-----------~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~ 421 (672)
.+++++|+.+|+++++. .+ ..++..+|.++.. .+++++|..+++++++.
T Consensus 298 ----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 298 ----LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM----LGQSDAYGAADARDLST 359 (368)
T ss_dssp ----HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHH----HTCGGGHHHHHTTCHHH
T ss_pred ----CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHH----hCChHhHHHhHHHHHHH
Confidence 67777777777776552 23 5667777777766 67777777776665543
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=2.5e-19 Score=188.02 Aligned_cols=252 Identities=14% Similarity=0.063 Sum_probs=171.8
Q ss_pred HHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCc
Q 005877 125 HARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPV 202 (672)
Q Consensus 125 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~ 202 (672)
..++.+|..|.. .+++++|+.+|++++. ++++.+++.+|.+|...|++++|+.+|+++++.
T Consensus 66 ~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------- 128 (365)
T 4eqf_A 66 PGAFEEGLKRLK----EGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL------------- 128 (365)
T ss_dssp TTHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred hHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------------
Confidence 345566666665 5666666666666654 456666666666666666666666666665542
Q ss_pred ccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc------
Q 005877 203 IEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK------ 276 (672)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~------ 276 (672)
.+.++.++..+|.+|... +++++|+.+|+++++.
T Consensus 129 -----------------------------------~p~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~p~~~~ 168 (365)
T 4eqf_A 129 -----------------------------------QPNNLKALMALAVSYTNT-----SHQQDACEALKNWIKQNPKYKY 168 (365)
T ss_dssp -----------------------------------CTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCHHHHC
T ss_pred -----------------------------------CCCCHHHHHHHHHHHHcc-----ccHHHHHHHHHHHHHhCccchH
Confidence 223455566666666555 3666666666666552
Q ss_pred ------CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Q 005877 277 ------GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKA 346 (672)
Q Consensus 277 ------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a 346 (672)
+.+.....+|.+|.. .+++++|+.+|+++++.. ++.++..+|.+|.. .|++++|+.+|+++
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~a 239 (365)
T 4eqf_A 169 LVKNKKGSPGLTRRMSKSPVD----SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL-----SGEFNRAIDAFNAA 239 (365)
T ss_dssp C-------------------C----CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH-----HTCHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHhh----hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH-----CCCHHHHHHHHHHH
Confidence 223344556778887 888888888888888653 67788888888875 56888888888888
Q ss_pred HhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC
Q 005877 347 ADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG 422 (672)
Q Consensus 347 ~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~ 422 (672)
++. +++.+++++|.+|.. .+++++|+.+|+++++. +++.+++++|.+|.. .+++++|+.+|+++++..
T Consensus 240 l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 240 LTVRPEDYSLWNRLGATLAN----GDRSEEAVEAYTRALEIQPGFIRSRYNLGISCIN----LGAYREAVSNFLTALSLQ 311 (365)
T ss_dssp HHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhC
Confidence 775 478888888888888 88888888888888774 467888888888887 888888888888887764
Q ss_pred C--------------hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005877 423 P--------------WSSLSRWALESYLKGDVGKAFLLYSRM 450 (672)
Q Consensus 423 ~--------------~~a~~~lg~~~~~~g~~~~A~~~~~~a 450 (672)
+ ...+..++.++...|+.+.+.....+.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 312 RKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred cccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 2 356778888888888888887766653
No 28
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.83 E-value=4.9e-20 Score=164.72 Aligned_cols=133 Identities=27% Similarity=0.353 Sum_probs=81.8
Q ss_pred CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCH
Q 005877 257 RGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNY 336 (672)
Q Consensus 257 ~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~ 336 (672)
.|+++|+++|+++|+++++.+++.++ ||.+|..| ...++|+.||+++++.+++.+++.||.+|..|.|+.+ |+
T Consensus 5 ~g~~~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g----~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~-d~ 77 (138)
T 1klx_A 5 GTVKKDLKKAIQYYVKACELNEMFGC--LSLVSNSQ----INKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKK-DL 77 (138)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCTTHH--HHHHTCTT----SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCC-CH
T ss_pred cCCccCHHHHHHHHHHHHcCCCHhhh--HHHHHHcC----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCc-cH
Confidence 45566666666666666666666666 66666653 3344466666666666666666666666666666544 66
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005877 337 TKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAK 396 (672)
Q Consensus 337 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~ 396 (672)
++|+.||++|++.+++.++++||.+|..|.|+.+|+++|+.||++|++.+++.+..+|+.
T Consensus 78 ~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~l~~ 137 (138)
T 1klx_A 78 RKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILNN 137 (138)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHC--
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHhh
Confidence 666666666666666666666666666666666666666666666666666666665553
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=1.6e-18 Score=181.85 Aligned_cols=263 Identities=17% Similarity=0.186 Sum_probs=160.7
Q ss_pred CcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCC
Q 005877 84 AINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGN 159 (672)
Q Consensus 84 ~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~ 159 (672)
+...++.+|..++. .+++++|+..|+++. .+.++.+++.+|.+|.. .+++++|+.+|++++. +.+
T Consensus 64 ~~~~~~~~~~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~ 132 (365)
T 4eqf_A 64 DWPGAFEEGLKRLK-------EGDLPVTILFMEAAILQDPGDAEAWQFLGITQAE----NENEQAAIVALQRCLELQPNN 132 (365)
T ss_dssp TCTTHHHHHHHHHH-------HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTC
T ss_pred chhHHHHHHHHHHH-------CCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCC
Confidence 45668999998885 589999999999954 56899999999999999 9999999999999987 688
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHc
Q 005877 160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK 239 (672)
Q Consensus 160 ~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~ 239 (672)
+.++..+|.+|...|++++|+.+|+++++..+...... ..+ .
T Consensus 133 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------------~~~----------------------~ 174 (365)
T 4eqf_A 133 LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLV----------------KNK----------------------K 174 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------------------------------
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHH----------------hhh----------------------c
Confidence 99999999999999999999999999998765532110 000 0
Q ss_pred CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--C--CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--C
Q 005877 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--G--EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--Q 313 (672)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~ 313 (672)
+.+.....+|.++... +++++|+.+|+++++. . ++.++..+|.+|.. .+++++|+.+|+++++. +
T Consensus 175 ~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~ 245 (365)
T 4eqf_A 175 GSPGLTRRMSKSPVDS-----SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL----SGEFNRAIDAFNAALTVRPE 245 (365)
T ss_dssp --------------CC-----HHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTT
T ss_pred cchHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCC
Confidence 2233334444444433 2555555555555442 2 44555555555554 55555555555555443 2
Q ss_pred CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC-----
Q 005877 314 LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG----- 386 (672)
Q Consensus 314 ~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~----- 386 (672)
++.++..+|.+|.. .|++++|+.+|+++++. +++.+++++|.+|.. .+++++|+.+|+++++..
T Consensus 246 ~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~ 316 (365)
T 4eqf_A 246 DYSLWNRLGATLAN-----GDRSEEAVEAYTRALEIQPGFIRSRYNLGISCIN----LGAYREAVSNFLTALSLQRKSRN 316 (365)
T ss_dssp CHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCHHHHHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccCC
Confidence 44555555555543 34555555555555443 245555555555555 555555555555554421
Q ss_pred ---------CHHHHHHHHHHHHcCCCccCCHHHHHHHHHH
Q 005877 387 ---------HQKAFYQLAKMFHTGVGLKKNLHMATALYKL 417 (672)
Q Consensus 387 ---------~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~ 417 (672)
....+..|+.++.. .++.+.+....++
T Consensus 317 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 317 QQQVPHPAISGNIWAALRIALSL----MDQPELFQAANLG 352 (365)
T ss_dssp ----------CHHHHHHHHHHHH----HTCHHHHHHHHTT
T ss_pred CcccchhhhHHHHHHHHHHHHHH----cCcHHHHHHHHHh
Confidence 13455555555554 5555555554444
No 30
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.82 E-value=8.2e-20 Score=163.27 Aligned_cols=136 Identities=21% Similarity=0.263 Sum_probs=125.9
Q ss_pred HcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCch
Q 005877 290 ARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVK 369 (672)
Q Consensus 290 ~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~ 369 (672)
..|.|+++|+++|+.||+++++.+++.++ ||.+|..| ...++|+.+|++|++.+++.++++||.+|..|.|+.
T Consensus 2 ~~G~g~~~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g-----~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~ 74 (138)
T 1klx_A 2 VGGGTVKKDLKKAIQYYVKACELNEMFGC--LSLVSNSQ-----INKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVK 74 (138)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHHTTCTTHH--HHHHTCTT-----SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSC
T ss_pred CCCcCCccCHHHHHHHHHHHHcCCCHhhh--HHHHHHcC-----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCC
Confidence 45889999999999999999999999999 99999874 366779999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 005877 370 RDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWAL 432 (672)
Q Consensus 370 ~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 432 (672)
+|+++|+.||++|++.+++.++++||.+|..|.|+.+|+++|+.||+++++.+++.+..+++.
T Consensus 75 ~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~l~~ 137 (138)
T 1klx_A 75 KDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILNN 137 (138)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHC--
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999888777653
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=1.8e-18 Score=177.61 Aligned_cols=144 Identities=16% Similarity=0.143 Sum_probs=113.2
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhc
Q 005877 296 ERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRD 371 (672)
Q Consensus 296 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~ 371 (672)
.+++++|+.+++++++. .++.++..+|.+|.. .+++++|+.+++++++. +++.++..+|.++.. .++
T Consensus 151 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 221 (327)
T 3cv0_A 151 PNEYRECRTLLHAALEMNPNDAQLHASLGVLYNL-----SNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN----GNR 221 (327)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTC
T ss_pred cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-----hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCC
Confidence 67888888888887764 367778888888875 56888888888888765 467788888888888 788
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh--------------hHHHHHHHHHH
Q 005877 372 VKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW--------------SSLSRWALESY 435 (672)
Q Consensus 372 ~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~--------------~a~~~lg~~~~ 435 (672)
+++|+.+|+++++. .++.++..+|.+|.. .+++++|+.+|+++++..+. .++..+|.++.
T Consensus 222 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (327)
T 3cv0_A 222 PQEALDAYNRALDINPGYVRVMYNMAVSYSN----MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLN 297 (327)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHH
Confidence 88888888888764 467788888888887 78888888888888776543 46778888888
Q ss_pred hcCCHHHHHHHHHHHHH
Q 005877 436 LKGDVGKAFLLYSRMAE 452 (672)
Q Consensus 436 ~~g~~~~A~~~~~~a~~ 452 (672)
..|++++|...++++++
T Consensus 298 ~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 298 VMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HTTCHHHHHHHTTCCSH
T ss_pred hcCCHHHHHHHHHHHHH
Confidence 89999999888877654
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=1.1e-17 Score=171.66 Aligned_cols=232 Identities=14% Similarity=0.118 Sum_probs=139.1
Q ss_pred CcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCC
Q 005877 84 AINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGN 159 (672)
Q Consensus 84 ~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~ 159 (672)
++...+.+|..++. .+++++|+..|+++. .+.++.++..+|.+|.. .+++++|+.+++++.. +.+
T Consensus 20 ~~~~~~~~a~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~ 88 (327)
T 3cv0_A 20 YHENPMEEGLSMLK-------LANLAEAALAFEAVCQAAPEREEAWRSLGLTQAE----NEKDGLAIIALNHARMLDPKD 88 (327)
T ss_dssp GSSCHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTC
T ss_pred hhHHHHHHHHHHHH-------hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCcCC
Confidence 45677888988775 589999999999954 56889999999999999 9999999999999987 678
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhc----ccCchhhh-hH-hhhccCChHHHHHHH
Q 005877 160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRI----HNGAEENK-GA-LRKSRGEDDEAFQIL 233 (672)
Q Consensus 160 ~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~-~~-~~~~~g~~~~Ai~~~ 233 (672)
+.++..+|.+|...|++++|+.+|+++++..+..... ..... .......+ +. ++...|++++|+..+
T Consensus 89 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 161 (327)
T 3cv0_A 89 IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL-------GSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLL 161 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC---------------------------CCTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHH-------HHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHH
Confidence 9999999999999999999999999998754332110 00000 00000001 11 234444455555555
Q ss_pred HHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHH
Q 005877 234 EYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHA 309 (672)
Q Consensus 234 ~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a 309 (672)
+++.+. .++.++..+|.+|... +++++|+.+|+++++. +++.++..+|.+|.. .+++++|+.+|+++
T Consensus 162 ~~~~~~~~~~~~~~~~la~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 162 HAALEMNPNDAQLHASLGVLYNLS-----NNYDSAAANLRRAVELRPDDAQLWNKLGATLAN----GNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHH
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Confidence 544332 2444455555544444 2455555555544432 334444444444444 44444444444444
Q ss_pred HHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Q 005877 310 ARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAA 347 (672)
Q Consensus 310 ~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~ 347 (672)
++. +++.++..+|.+|.. .|++++|+.+|++++
T Consensus 233 ~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 233 LDINPGYVRVMYNMAVSYSN-----MSQYDLAAKQLVRAI 267 (327)
T ss_dssp HHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH-----hccHHHHHHHHHHHH
Confidence 432 234444444444443 234444444444443
No 33
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.80 E-value=8.7e-18 Score=179.03 Aligned_cols=266 Identities=12% Similarity=0.083 Sum_probs=213.1
Q ss_pred HHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccC
Q 005877 125 HARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNI----QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISK 198 (672)
Q Consensus 125 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~----~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~ 198 (672)
..++.+|..+.. .+++++|+.+|+++++ ++++ .++..+|.+|...|++++|+.+|+++++.....
T Consensus 49 ~~l~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----- 119 (411)
T 4a1s_A 49 LELALEGERLCN----AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM----- 119 (411)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHH----hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-----
Confidence 455678888888 8899999999999887 4555 578899999999999999999999988753210
Q ss_pred CCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--
Q 005877 199 DSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-- 276 (672)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-- 276 (672)
+ -.+....++..+|.+|... +++++|+.+|+++++.
T Consensus 120 -------------------------~------------~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~ 157 (411)
T 4a1s_A 120 -------------------------N------------DRLGEAKSSGNLGNTLKVM-----GRFDEAAICCERHLTLAR 157 (411)
T ss_dssp -------------------------T------------CHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHH
T ss_pred -------------------------c------------CchHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHH
Confidence 0 0122456788888888877 4888888888888763
Q ss_pred ------CCHHHHHHHHHHHHcCCCCcCC-----------------HHHHHHHHHHHHHc----C----CHHHHHHHHHHH
Q 005877 277 ------GEPQSMEFLGEIYARGAGVERN-----------------YTKALEWLTHAARQ----Q----LYSAYNGIGYLY 325 (672)
Q Consensus 277 ------~~~~a~~~Lg~~y~~g~g~~~~-----------------~~~A~~~~~~a~~~----~----~~~a~~~Lg~~y 325 (672)
....++..+|.+|.. .++ +++|+.+|+++++. + ...++..+|.+|
T Consensus 158 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 233 (411)
T 4a1s_A 158 QLGDRLSEGRALYNLGNVYHA----KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTY 233 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHH----HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhhchHHHHHHHHHHHHHHHH----cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 235688889999888 888 89999999888753 2 345788899999
Q ss_pred HcCCCCCcCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--------CHH
Q 005877 326 VKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--------HQK 389 (672)
Q Consensus 326 ~~g~g~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--------~~~ 389 (672)
.. .|++++|+.+|+++++. ++ ..++.++|.+|.. .+++++|+.+|+++++.. ...
T Consensus 234 ~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 234 YL-----LGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF----LGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HH-----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HH-----cCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 86 67999999999999775 22 3488899999999 899999999999997642 257
Q ss_pred HHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHH
Q 005877 390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--------WSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVA 458 (672)
Q Consensus 390 a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a 458 (672)
++..+|.+|.. .+++++|+.+|+++++..+ ..++..+|.++...|++++|+.+|+++++......
T Consensus 305 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 377 (411)
T 4a1s_A 305 SCYSLGNTYTL----LHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXX 377 (411)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence 88999999988 8999999999999987632 34788899999999999999999999988764443
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.79 E-value=6.9e-18 Score=163.47 Aligned_cols=197 Identities=15% Similarity=0.044 Sum_probs=132.6
Q ss_pred CCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccC
Q 005877 121 EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISK 198 (672)
Q Consensus 121 ~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~ 198 (672)
|.++.+++.+|.++.. .+++++|+.+|++++. ++++.+++.+|.++...|++++|+..|+++++.
T Consensus 2 p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------- 68 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYA----LGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--------- 68 (217)
T ss_dssp --CCHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------
T ss_pred CCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------
Confidence 4678889999999988 8899999999999886 688999999999999999999999999998773
Q ss_pred CCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc------ccCHHHHHHHHHH
Q 005877 199 DSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGL------RRDRTKALMWFSK 272 (672)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~------~~~~~~A~~~~~~ 272 (672)
+++++.+++.+|.++....... .+++++|+..|++
T Consensus 69 ---------------------------------------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 109 (217)
T 2pl2_A 69 ---------------------------------------TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKD 109 (217)
T ss_dssp ---------------------------------------CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHH
Confidence 4457778888888876650000 0267777777777
Q ss_pred HHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC
Q 005877 273 AAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN 349 (672)
Q Consensus 273 a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~ 349 (672)
+++ ++++.+++.+|.+|.. .+++++|+..|+++++. +++.++..+|.+|.. .|++++|+.+|+++++.
T Consensus 110 al~~~P~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 110 AERVNPRYAPLHLQRGLVYAL----LGERDKAEASLKQALALEDTPEIRSALAELYLS-----MGRLDEALAQYAKALEQ 180 (217)
T ss_dssp HHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHH
T ss_pred HHHhCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcccchHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHh
Confidence 665 3566677777777766 67777777777776644 456666677776664 45677777777776654
Q ss_pred --CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHH
Q 005877 350 --EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVA 382 (672)
Q Consensus 350 --~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 382 (672)
+++.+++++|.++.. .|++++|+.+|+++
T Consensus 181 ~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 181 APKDLDLRVRYASALLL----KGKAEEAARAAALE 211 (217)
T ss_dssp STTCHHHHHHHHHHHTC------------------
T ss_pred CCCChHHHHHHHHHHHH----ccCHHHHHHHHHHH
Confidence 466666777777666 66777776666654
No 35
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.79 E-value=1.7e-17 Score=175.85 Aligned_cols=281 Identities=14% Similarity=0.072 Sum_probs=216.2
Q ss_pred ChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhc
Q 005877 123 DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGN----IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLI 196 (672)
Q Consensus 123 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~----~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~ 196 (672)
...+++.+|.++.. .+++++|+.+|++++. +++ ..++..+|.+|...|++++|+.+|+++++......
T Consensus 8 ~~~~l~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-- 81 (406)
T 3sf4_A 8 SCLELALEGERLCK----SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG-- 81 (406)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHH----hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc--
Confidence 45567888999888 8899999999999887 455 36788899999999999999999999877532110
Q ss_pred cCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc
Q 005877 197 SKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK 276 (672)
Q Consensus 197 ~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~ 276 (672)
-.+..+.++..+|.+|... +++++|+.+|+++++.
T Consensus 82 ----------------------------------------~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~ 116 (406)
T 3sf4_A 82 ----------------------------------------DQLGEAKASGNLGNTLKVL-----GNFDEAIVCCQRHLDI 116 (406)
T ss_dssp ----------------------------------------CHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHH
T ss_pred ----------------------------------------ccHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHH
Confidence 0112356777788888777 3888888888887763
Q ss_pred ----CC----HHHHHHHHHHHHcCCCCcCC--------------------HHHHHHHHHHHHHc----C----CHHHHHH
Q 005877 277 ----GE----PQSMEFLGEIYARGAGVERN--------------------YTKALEWLTHAARQ----Q----LYSAYNG 320 (672)
Q Consensus 277 ----~~----~~a~~~Lg~~y~~g~g~~~~--------------------~~~A~~~~~~a~~~----~----~~~a~~~ 320 (672)
++ +.++..+|.+|.. .++ +++|+.+|+++++. + ...++..
T Consensus 117 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 192 (406)
T 3sf4_A 117 SRELNDKVGEARALYNLGNVYHA----KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGN 192 (406)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHH----HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhcccccchHHHHHHHHHHHHH----cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 22 5578888888887 788 88888888888753 2 2456788
Q ss_pred HHHHHHcCCCCCcCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc----CC-
Q 005877 321 IGYLYVKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH- 387 (672)
Q Consensus 321 Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~- 387 (672)
+|.+|.. .|++++|+.+|+++++. ++ +.++.++|.+|.. .+++++|+.+|+++++. ++
T Consensus 193 la~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~ 263 (406)
T 3sf4_A 193 LGNTHYL-----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF----LGEFETASEYYKKTLLLARQLKDR 263 (406)
T ss_dssp HHHHHHH-----HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHH-----ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhCcCc
Confidence 8888875 56899999999988764 22 3478899999988 89999999999998753 22
Q ss_pred ---HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC----C----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 005877 388 ---QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----P----WSSLSRWALESYLKGDVGKAFLLYSRMAEL--- 453 (672)
Q Consensus 388 ---~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~----~----~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--- 453 (672)
..++..+|.+|.. .+++++|+.+|+++++.. + ..++..+|.++...|++++|+.+|+++++.
T Consensus 264 ~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 264 AVEAQSCYSLGNTYTL----LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 339 (406)
T ss_dssp HHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 5678899999987 899999999999987753 2 346788999999999999999999999655
Q ss_pred -C----CHHHHHHHHHHHHHhCC
Q 005877 454 -G----YEVAQSNAAWILDKYGE 471 (672)
Q Consensus 454 -g----~~~a~~nla~~l~~~~~ 471 (672)
+ ...++.+++.++...|.
T Consensus 340 ~~~~~~~~~~~~~l~~~~~~~g~ 362 (406)
T 3sf4_A 340 VGDKSGELTARLNLSDLQMVLGL 362 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHT
T ss_pred hcCCcchhHHHHHHHHHHHHhhH
Confidence 2 35567778888877543
No 36
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.79 E-value=1.7e-17 Score=176.77 Aligned_cols=268 Identities=17% Similarity=0.193 Sum_probs=213.4
Q ss_pred CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCH----HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--
Q 005877 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEP----QSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-- 312 (672)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~----~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-- 312 (672)
....++.+|..++.. +++++|+.+|+++++. +++ .++..+|.+|.. .+++++|+.+|+++++.
T Consensus 47 ~~~~l~~~g~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~ 117 (411)
T 4a1s_A 47 MCLELALEGERLCNA-----GDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFY----LGDYNKAMQYHKHDLTLAK 117 (411)
T ss_dssp HHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHH
Confidence 345677889998888 4999999999999874 444 588999999998 89999999999999864
Q ss_pred ------CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHcCCCchhc-------
Q 005877 313 ------QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--------EEAGGHYNLGVMYYKGIGVKRD------- 371 (672)
Q Consensus 313 ------~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~g~~~~------- 371 (672)
..+.++..+|.+|.. .|++++|+.+|+++++. ....++.++|.+|.. .++
T Consensus 118 ~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~~ 188 (411)
T 4a1s_A 118 SMNDRLGEAKSSGNLGNTLKV-----MGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA----KGKHLGQRNP 188 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HHHHHHHHST
T ss_pred HccCchHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH----cCcccccccc
Confidence 245678899999986 67999999999999765 235688899999998 889
Q ss_pred ----------HHHHHHHHHHHHHc----C----CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--------hh
Q 005877 372 ----------VKLACKYFLVAANA----G----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--------WS 425 (672)
Q Consensus 372 ----------~~~A~~~~~~A~~~----~----~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--------~~ 425 (672)
+++|+.+|+++++. + ...++.++|.+|.. .+++++|+.+|+++++..+ ..
T Consensus 189 ~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (411)
T 4a1s_A 189 GKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYL----LGDFQAAIEHHQERLRIAREFGDRAAERR 264 (411)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 99999999998763 2 24578888988887 8899999999999877642 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHH
Q 005877 426 SLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEH 505 (672)
Q Consensus 426 a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 505 (672)
++..+|.++...|++++|+.+|+++++...... + ......
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----------------------------~------------~~~~~~ 304 (411)
T 4a1s_A 265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG----------------------------E------------REVEAQ 304 (411)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT----------------------------C------------HHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC----------------------------C------------HHHHHH
Confidence 677888888888888888888888865421000 0 001145
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877 506 AALLIGDAYYYGRGTQRDYERAAEAYMHARSQ----SN----AQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA 577 (672)
Q Consensus 506 a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~----~~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 577 (672)
++..+|.+|. ..+++++|+.+++++++. ++ ..++.+||.+|.. .|++++|+.+|++|+++.+..
T Consensus 305 ~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 305 SCYSLGNTYT----LLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA----IGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHhhc
Confidence 7788999999 889999999999999763 22 5689999999988 899999999999999998764
Q ss_pred c
Q 005877 578 K 578 (672)
Q Consensus 578 ~ 578 (672)
.
T Consensus 377 ~ 377 (411)
T 4a1s_A 377 X 377 (411)
T ss_dssp H
T ss_pred c
Confidence 3
No 37
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.79 E-value=7.9e-18 Score=178.45 Aligned_cols=270 Identities=17% Similarity=0.141 Sum_probs=189.1
Q ss_pred CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--
Q 005877 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GE----PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-- 312 (672)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-- 312 (672)
...+++.+|..++.. +++++|+.+|+++++. ++ ..++..+|.+|.. .+++++|+.+|+++++.
T Consensus 8 ~~~~l~~~g~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~ 78 (406)
T 3sf4_A 8 SCLELALEGERLCKS-----GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY----LHDYAKALEYHHHDLTLAR 78 (406)
T ss_dssp CHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHH
Confidence 345566777777766 3777777777777663 33 3566777777777 77777777777777643
Q ss_pred --C----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCchhc-------
Q 005877 313 --Q----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVKRD------- 371 (672)
Q Consensus 313 --~----~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~------- 371 (672)
+ .+.++..+|.+|.. .|++++|+.+|+++++. ++ +.++.++|.+|.. .++
T Consensus 79 ~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~~ 149 (406)
T 3sf4_A 79 TIGDQLGEAKASGNLGNTLKV-----LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA----KGKSFGCPGP 149 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HHHTCC----
T ss_pred hccccHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH----cCCccccccc
Confidence 1 24566777777765 46777787777777654 22 4577788888877 777
Q ss_pred -------------HHHHHHHHHHHHHc----C----CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC-------
Q 005877 372 -------------VKLACKYFLVAANA----G----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP------- 423 (672)
Q Consensus 372 -------------~~~A~~~~~~A~~~----~----~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~------- 423 (672)
+++|+.+|+++++. + ...++.++|.+|.. .+++++|+.+++++++..+
T Consensus 150 ~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~ 225 (406)
T 3sf4_A 150 QDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAA 225 (406)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTBHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHhcCCcHH
Confidence 88888888877652 1 23567778888776 7888888888888876531
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C----HHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHH
Q 005877 424 -WSSLSRWALESYLKGDVGKAFLLYSRMAELG----Y----EVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSL 494 (672)
Q Consensus 424 -~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g----~----~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 494 (672)
..++..+|.++...|++++|+.+++++++.. + ..++.++|.++.. .+++++|+.+
T Consensus 226 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----------------~g~~~~A~~~ 289 (406)
T 3sf4_A 226 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL----------------LQDYEKAIDY 289 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHH----------------hCcHHHHHHH
Confidence 1267778888888888888888888886542 1 4456677777766 5677777777
Q ss_pred HHHHHhC----CC----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc----C----CHHHHHHHHHHHHc
Q 005877 495 WWQASEQ----GN----EHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ----S----NAQAMFNLGYMHEH 552 (672)
Q Consensus 495 ~~~a~~~----~~----~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~----~----~~~a~~~Lg~~y~~ 552 (672)
++++.+. ++ ..++..+|.+|. ..+++++|+.+|+++++. + ...++..||.+|..
T Consensus 290 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (406)
T 3sf4_A 290 HLKHLAIAQELNDRIGEGRACWSLGNAYT----ALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMV 359 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence 7765432 22 557778999998 889999999999998753 2 25678888888755
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.79 E-value=1.3e-17 Score=166.87 Aligned_cols=237 Identities=17% Similarity=0.172 Sum_probs=164.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHH
Q 005877 159 NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ 238 (672)
Q Consensus 159 ~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~ 238 (672)
|++.++.+|.++...|++++|+.+|+++++..
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~------------------------------------------------ 33 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK------------------------------------------------ 33 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTT------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------------------------------------------------
Confidence 34566777777777777777777777776532
Q ss_pred cCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-
Q 005877 239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG-----EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ- 312 (672)
Q Consensus 239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~- 312 (672)
+.++.+++.+|.+|... +++++|+++|+++++.. .+.++..+|.+|.. .+++++|+.+|+++++.
T Consensus 34 p~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~a~~~~ 104 (272)
T 3u4t_A 34 YNSPYIYNRRAVCYYEL-----AKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK----KGQDSLAIQQYQAAVDRD 104 (272)
T ss_dssp CCCSTTHHHHHHHHHHT-----TCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHS
T ss_pred CCcHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcC
Confidence 23555677777777766 37777777777777631 24557777777777 77778888888777764
Q ss_pred -CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHH-HHHHcCCCchhcHHHHHHHHHHHHHc--C
Q 005877 313 -QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLG-VMYYKGIGVKRDVKLACKYFLVAANA--G 386 (672)
Q Consensus 313 -~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg-~~y~~g~g~~~~~~~A~~~~~~A~~~--~ 386 (672)
.++.++..+|.+|.. .|++++|+.+|+++++. .++.+++++| .+|.. +++++|+.+|+++++. .
T Consensus 105 ~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~a~~~~p~ 174 (272)
T 3u4t_A 105 TTRLDMYGQIGSYFYN-----KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN-----KEYVKADSSFVKVLELKPN 174 (272)
T ss_dssp TTCTHHHHHHHHHHHH-----TTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHSTT
T ss_pred cccHHHHHHHHHHHHH-----ccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhCcc
Confidence 466777778887775 56788888888887765 4677778888 66665 3788888888887764 3
Q ss_pred CHHHHHHHHHHHHcCCCccCC---HHHHHHHHHHHHHcC---Ch-------hHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 387 HQKAFYQLAKMFHTGVGLKKN---LHMATALYKLVAERG---PW-------SSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 387 ~~~a~~~L~~~y~~g~g~~~~---~~~A~~~~~~a~~~~---~~-------~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
+..+++++|.++.. .++ +++|+.+|+++++.. +. .++..+|..+...|++++|+.+|+++++.
T Consensus 175 ~~~~~~~~~~~~~~----~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 175 IYIGYLWRARANAA----QDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp CHHHHHHHHHHHHH----HSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH----cCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 56777778877765 444 777888888877653 22 46777888888888888888888888554
Q ss_pred --CCHHHHHHHHHHH
Q 005877 454 --GYEVAQSNAAWIL 466 (672)
Q Consensus 454 --g~~~a~~nla~~l 466 (672)
+++.+.-.++.+.
T Consensus 251 ~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 251 DPTNKKAIDGLKMKL 265 (272)
T ss_dssp CTTCHHHHHHHC---
T ss_pred CccHHHHHHHhhhhh
Confidence 5667665555443
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.79 E-value=8.1e-18 Score=168.29 Aligned_cols=227 Identities=16% Similarity=0.099 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC-----CH
Q 005877 280 QSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-----EA 352 (672)
Q Consensus 280 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~-----~~ 352 (672)
.+++.+|.++.. .+++++|+.+|+++++.. ++.++..+|.+|.. .+++++|+.+|+++++.. .+
T Consensus 4 ~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~~ 74 (272)
T 3u4t_A 4 DVEFRYADFLFK----NNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYE-----LAKYDLAQKDIETYFSKVNATKAKS 74 (272)
T ss_dssp -CHHHHHHHHHT----TTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHH-----TTCHHHHHHHHHHHHTTSCTTTCCH
T ss_pred HHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHhccCchhHHH
Confidence 344455555555 555555555555555432 34445555555543 345555555555555421 12
Q ss_pred HHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHH
Q 005877 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRW 430 (672)
Q Consensus 353 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l 430 (672)
.+++.+|.+|.. .+++++|+.+|+++++. .++.++..+|.+|.. .+++++|+.+|+++++..
T Consensus 75 ~~~~~lg~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~-------- 138 (272)
T 3u4t_A 75 ADFEYYGKILMK----KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN----KGNFPLAIQYMEKQIRPT-------- 138 (272)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH----TTCHHHHHHHHGGGCCSS--------
T ss_pred HHHHHHHHHHHH----cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHhhcC--------
Confidence 334555555555 45555555555555442 234444555555444 445555555554444433
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHH--hCCCHHHH
Q 005877 431 ALESYLKGDVGKAFLLYSRMAELGYEVAQSNAA-WILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS--EQGNEHAA 507 (672)
Q Consensus 431 g~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla-~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~ 507 (672)
+.+..++.++| .++.. +++++|+..+++++ .+.++.++
T Consensus 139 ----------------------~~~~~~~~~l~~~~~~~-----------------~~~~~A~~~~~~a~~~~p~~~~~~ 179 (272)
T 3u4t_A 139 ----------------------TTDPKVFYELGQAYYYN-----------------KEYVKADSSFVKVLELKPNIYIGY 179 (272)
T ss_dssp ----------------------CCCHHHHHHHHHHHHHT-----------------TCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred ----------------------CCcHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhCccchHHH
Confidence 22344444444 33321 14444444444432 23445666
Q ss_pred HHHHHHHHhCCCCCCC---HHHHHHHHHHHHhc----CC------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcC
Q 005877 508 LLIGDAYYYGRGTQRD---YERAAEAYMHARSQ----SN------AQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVD 574 (672)
Q Consensus 508 ~~lG~~y~~g~g~~~d---~~~A~~~~~~A~~~----~~------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 574 (672)
+.+|.++. ..++ +++|+.+|+++++. .+ ..++..||.+|.. .+|+++|+++|+++++++
T Consensus 180 ~~~~~~~~----~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 180 LWRARANA----AQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI----NRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHH----HHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH----HcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Confidence 67777776 3444 77777888777653 12 2577778888776 778888888888888888
Q ss_pred CCCc
Q 005877 575 PAAK 578 (672)
Q Consensus 575 ~~~~ 578 (672)
|+..
T Consensus 252 p~~~ 255 (272)
T 3u4t_A 252 PTNK 255 (272)
T ss_dssp TTCH
T ss_pred ccHH
Confidence 7753
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.78 E-value=1.3e-17 Score=161.61 Aligned_cols=158 Identities=16% Similarity=0.033 Sum_probs=81.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCc-----------CCHHHHHHH
Q 005877 239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVE-----------RNYTKALEW 305 (672)
Q Consensus 239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~-----------~~~~~A~~~ 305 (672)
++++.+++.+|.++... +++++|+..|+++++ ++++.+++.+|.+|.. . +++++|+..
T Consensus 36 p~~~~a~~~lg~~~~~~-----g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~----~~~~~~~~~~~~g~~~~A~~~ 106 (217)
T 2pl2_A 36 PQDPEALYWLARTQLKL-----GLVNPALENGKTLVARTPRYLGGYMVLSEAYVA----LYRQAEDRERGKGYLEQALSV 106 (217)
T ss_dssp SSCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HHHTCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----hhhhhhhhcccccCHHHHHHH
Confidence 45666666667666665 366667777766655 3566666666666665 5 555555555
Q ss_pred HHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHH
Q 005877 306 LTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVA 382 (672)
Q Consensus 306 ~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 382 (672)
|+++++. +++.++..+|.+|.. .|++++|+.+|+++++. +++.+++++|.+|.. .+++++|+.+|+++
T Consensus 107 ~~~al~~~P~~~~~~~~lg~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a 177 (217)
T 2pl2_A 107 LKDAERVNPRYAPLHLQRGLVYAL-----LGERDKAEASLKQALALEDTPEIRSALAELYLS----MGRLDEALAQYAKA 177 (217)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HTCHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHH-----cCChHHHHHHHHHHHhcccchHHHHHHHHHHHH----cCCHHHHHHHHHHH
Confidence 5555543 345555555555553 34555555555555433 345555555555555 55555555555555
Q ss_pred HH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHH
Q 005877 383 AN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLV 418 (672)
Q Consensus 383 ~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a 418 (672)
++ ++++.++.++|.++.. .+++++|+.+|+++
T Consensus 178 l~~~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 178 LEQAPKDLDLRVRYASALLL----KGKAEEAARAAALE 211 (217)
T ss_dssp HHHSTTCHHHHHHHHHHHTC------------------
T ss_pred HHhCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHH
Confidence 44 2344555555555544 45555555554443
No 41
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=1.6e-15 Score=174.67 Aligned_cols=363 Identities=10% Similarity=0.042 Sum_probs=261.1
Q ss_pred hhhHHHHHHHHHHHHhC-----CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCHHHH
Q 005877 105 VRVMEEATSEVESAAME-----GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKA 179 (672)
Q Consensus 105 ~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~~~~~~~A 179 (672)
.+++.+|+..|+++.-. .|...+..|...... -|..+...+..+.-... .-.+|.++...|.+++|
T Consensus 998 aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIk-----aD~~Rv~eyI~kLd~~d----~~eIA~Iai~lglyEEA 1068 (1630)
T 1xi4_A 998 ADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIK-----ADRTRVMEYINRLDNYD----APDIANIAISNELFEEA 1068 (1630)
T ss_pred CCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHH-----hChhhHHHHHHHhhhcc----HHHHHHHHHhCCCHHHH
Confidence 57788888888886522 233455545444332 14455555544433211 23388899999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 005877 180 VKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGL 259 (672)
Q Consensus 180 ~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~ 259 (672)
...|+++.... .....+....+++++|+++.++. .++.+++.+|..+...+
T Consensus 1069 f~IYkKa~~~~-----------------------~A~~VLie~i~nldrAiE~Aerv---n~p~vWsqLAKAql~~G--- 1119 (1630)
T 1xi4_A 1069 FAIFRKFDVNT-----------------------SAVQVLIEHIGNLDRAYEFAERC---NEPAVWSQLAKAQLQKG--- 1119 (1630)
T ss_pred HHHHHHcCCHH-----------------------HHHHHHHHHHhhHHHHHHHHHhc---CCHHHHHHHHHHHHhCC---
Confidence 99999863211 11333444778888888888754 67999999999998884
Q ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCCcCCHHH
Q 005877 260 RRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-LYSAYNGIGYLYVKGYGVEKKNYTK 338 (672)
Q Consensus 260 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~~ 338 (672)
++++|++.|.+| +++.++..+|..+.. .+++++|+++|+.|.+.. ++.....+|..|.. .+++++
T Consensus 1120 --~~kEAIdsYiKA---dD~say~eVa~~~~~----lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAK-----l~rlee 1185 (1630)
T 1xi4_A 1120 --MVKEAIDSYIKA---DDPSSYMEVVQAANT----SGNWEELVKYLQMARKKARESYVETELIFALAK-----TNRLAE 1185 (1630)
T ss_pred --CHHHHHHHHHhc---CChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcccccccHHHHHHHHh-----hcCHHH
Confidence 999999999876 889999999999998 899999999999988764 33455568888875 346653
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHH
Q 005877 339 AKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLV 418 (672)
Q Consensus 339 A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a 418 (672)
++.| ++..+...+.++|..+.. .+++++|..+|.++ ..+..++.+|.. .+++++|++.+++|
T Consensus 1186 -le~f---I~~~n~ad~~~iGd~le~----eg~YeeA~~~Y~kA------~ny~rLA~tLvk----Lge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1186 -LEEF---INGPNNAHIQQVGDRCYD----EKMYDAAKLLYNNV------SNFGRLASTLVH----LGEYQAAVDGARKA 1247 (1630)
T ss_pred -HHHH---HhCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhh------hHHHHHHHHHHH----hCCHHHHHHHHHHh
Confidence 4444 344566777789999998 89999999999986 477888988887 78899999999988
Q ss_pred HHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHH
Q 005877 419 AERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQA 498 (672)
Q Consensus 419 ~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 498 (672)
+++.++...+.++...|++..|..+... + .-++.....++..|.. .+.+++|+.+++++
T Consensus 1248 ---~n~~aWkev~~acve~~Ef~LA~~cgl~-I-iv~~deLeeli~yYe~----------------~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1248 ---NSTRTWKEVCFACVDGKEFRLAQMCGLH-I-VVHADELEELINYYQD----------------RGYFEELITMLEAA 1306 (1630)
T ss_pred ---CCHHHHHHHHHHHhhhhHHHHHHHHHHh-h-hcCHHHHHHHHHHHHH----------------cCCHHHHHHHHHHH
Confidence 5567778888888888888888887763 2 2244555567777766 66788888888888
Q ss_pred HhCCCHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHcCCCCCCCHHHHH
Q 005877 499 SEQGNEH--AALLIGDAYYYGRGTQRDYERAAEAYMHARSQ-------SNAQAMFNLGYMHEHGQGLPLDLHLAK 564 (672)
Q Consensus 499 ~~~~~~~--a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~-------~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 564 (672)
+..+++. .+..||.+|..= .+++..+++++|...+.. .++..+..+..+|.+ -+++++|+
T Consensus 1307 L~LeraH~gmftELaiLyaKy--~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~----~~e~dnA~ 1375 (1630)
T 1xi4_A 1307 LGLERAHMGMFTELAILYSKF--KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK----YEEYDNAI 1375 (1630)
T ss_pred hccChhHhHHHHHHHHHHHhC--CHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHh----cccHHHHH
Confidence 7666543 344577777632 567777788888776553 356667777777776 56777777
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=5.5e-17 Score=160.37 Aligned_cols=220 Identities=13% Similarity=0.057 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--C----
Q 005877 279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--E---- 351 (672)
Q Consensus 279 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~---- 351 (672)
+.++..+|.++.. .+++++|+.+|+++++. .++.++..+|.+|.. .+++++|+.+|+++++.. +
T Consensus 5 a~~~~~~g~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~~ 75 (258)
T 3uq3_A 5 ADKEKAEGNKFYK----ARQFDEAIEHYNKAWELHKDITYLNNRAAAEYE-----KGEYETAISTLNDAVEQGREMRADY 75 (258)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHH----hccHHHHHHHHHHHHHhhccHHHHHHHHHHHHH-----cccHHHHHHHHHHHHHhCcccccch
Confidence 3445555555555 55555555555555433 244455555555543 345555555555554431 1
Q ss_pred ---HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHH
Q 005877 352 ---AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLS 428 (672)
Q Consensus 352 ---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~ 428 (672)
+.+++.+|.+|.. .+++++|+.+|+++++..+. +.++.. .+++++|+..++++++..+.
T Consensus 76 ~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~------~~~~~~----~~~~~~a~~~~~~~~~~~~~---- 137 (258)
T 3uq3_A 76 KVISKSFARIGNAYHK----LGDLKKTIEYYQKSLTEHRT------ADILTK----LRNAEKELKKAEAEAYVNPE---- 137 (258)
T ss_dssp HHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCC------HHHHHH----HHHHHHHHHHHHHHHHCCHH----
T ss_pred HHHHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcCch------hHHHHH----HhHHHHHHHHHHHHHHcCcc----
Confidence 3445555555555 55555555555555443221 112222 33444455555554444321
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHH--hCCCHHH
Q 005877 429 RWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS--EQGNEHA 506 (672)
Q Consensus 429 ~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a 506 (672)
+..++.++|.++.. .+++++|+.++++++ .+.++.+
T Consensus 138 --------------------------~~~~~~~~~~~~~~----------------~~~~~~A~~~~~~a~~~~~~~~~~ 175 (258)
T 3uq3_A 138 --------------------------KAEEARLEGKEYFT----------------KSDWPNAVKAYTEMIKRAPEDARG 175 (258)
T ss_dssp --------------------------HHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred --------------------------hHHHHHHHHHHHHH----------------hcCHHHHHHHHHHHHhcCcccHHH
Confidence 33334444444444 344555555555443 3456778
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCC
Q 005877 507 ALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDP 575 (672)
Q Consensus 507 ~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 575 (672)
++.+|.+|. ..+++++|+.+++++++ ++++.+++.+|.+|.. .|++++|+.+|+++++++|
T Consensus 176 ~~~l~~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~ 238 (258)
T 3uq3_A 176 YSNRAAALA----KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA----VKEYASALETLDAARTKDA 238 (258)
T ss_dssp HHHHHHHHH----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHhCh
Confidence 889999998 88999999999999976 4678999999999987 8999999999999999873
No 43
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=7.8e-17 Score=163.48 Aligned_cols=245 Identities=11% Similarity=0.081 Sum_probs=157.4
Q ss_pred CHHHHHHHHHHHHHcC--C-HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHH
Q 005877 262 DRTKALMWFSKAADKG--E-PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTK 338 (672)
Q Consensus 262 ~~~~A~~~~~~a~~~~--~-~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~ 338 (672)
++++|+.++++..... + ..+...++.+|.. .|+++.|+..++.. ......++..++..+.. .++.++
T Consensus 14 ~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~----~g~~~~al~~~~~~-~~~~~~a~~~la~~~~~-----~~~~~~ 83 (291)
T 3mkr_A 14 SYQQCINEAQRVKPSSPERDVERDVFLYRAYLA----QRKYGVVLDEIKPS-SAPELQAVRMFAEYLAS-----HSRRDA 83 (291)
T ss_dssp CHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHH----TTCHHHHHHHSCTT-SCHHHHHHHHHHHHHHC-----STTHHH
T ss_pred HHHHHHHHHHhcccCCchhhHHHHHHHHHHHHH----CCCHHHHHHHhccc-CChhHHHHHHHHHHHcC-----CCcHHH
Confidence 6666666666543321 1 2355666666666 66666666655442 22233455556666653 346677
Q ss_pred HHHHHHHHHhC----CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHH
Q 005877 339 AKEYFEKAADN----EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATAL 414 (672)
Q Consensus 339 A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~ 414 (672)
|++.+++.+.. +++.+++.+|.++.. .|++++|+.+|++ .+++.++..+|.++.. .++.++|+..
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~----~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~----~g~~~~A~~~ 152 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFY----DQNPDAALRTLHQ---GDSLECMAMTVQILLK----LDRLDLARKE 152 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHH----TTCHHHHHHHHTT---CCSHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHH----CCCHHHHHHHHhC---CCCHHHHHHHHHHHHH----CCCHHHHHHH
Confidence 77777666543 356666677777766 6677777776666 5566666666666665 5666666666
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHH
Q 005877 415 YKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSL 494 (672)
Q Consensus 415 ~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 494 (672)
|+++++..|......++..+... +.. .+++++|+..
T Consensus 153 l~~~~~~~p~~~~~~l~~a~~~l----------------------------~~~----------------~~~~~eA~~~ 188 (291)
T 3mkr_A 153 LKKMQDQDEDATLTQLATAWVSL----------------------------AAG----------------GEKLQDAYYI 188 (291)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHH----------------------------HHC----------------TTHHHHHHHH
T ss_pred HHHHHhhCcCcHHHHHHHHHHHH----------------------------HhC----------------chHHHHHHHH
Confidence 66666655444333333221110 000 2455666666
Q ss_pred HHHHH--hCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHH-HHHHHHHH
Q 005877 495 WWQAS--EQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLH-LAKRYYDQ 569 (672)
Q Consensus 495 ~~~a~--~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~-~A~~~~~~ 569 (672)
|++++ .++++.+++++|.++. ..+++++|+.+|+++++ ++++.+++++|.++.. .|+.. .+.+++++
T Consensus 189 ~~~~l~~~p~~~~~~~~la~~~~----~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~----~g~~~eaa~~~~~~ 260 (291)
T 3mkr_A 189 FQEMADKCSPTLLLLNGQAACHM----AQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQH----LGKPPEVTNRYLSQ 260 (291)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCCHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCCHHHHHHHHHH
Confidence 66543 3567888899999999 88999999999999976 5789999999998877 55665 46799999
Q ss_pred HHhcCCCCcc
Q 005877 570 ALEVDPAAKL 579 (672)
Q Consensus 570 A~~~~~~~~~ 579 (672)
+++++|+...
T Consensus 261 ~~~~~P~~~~ 270 (291)
T 3mkr_A 261 LKDAHRSHPF 270 (291)
T ss_dssp HHHHCTTCHH
T ss_pred HHHhCCCChH
Confidence 9999998754
No 44
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.77 E-value=1.2e-16 Score=164.07 Aligned_cols=262 Identities=13% Similarity=0.074 Sum_probs=205.6
Q ss_pred HHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccC
Q 005877 125 HARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGN----IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISK 198 (672)
Q Consensus 125 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~----~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~ 198 (672)
..++..|..+.. .+++++|+.+|+++++ +++ ..++..+|.+|...|++++|+.+++++++......
T Consensus 6 ~~l~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---- 77 (338)
T 3ro2_A 6 LELALEGERLCK----SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG---- 77 (338)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHH----hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc----
Confidence 456677888888 8899999999999886 455 36788899999999999999999999877532110
Q ss_pred CCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--
Q 005877 199 DSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-- 276 (672)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-- 276 (672)
-.+..+.++..+|.+|... +++++|+.+|+++++.
T Consensus 78 --------------------------------------~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~ 114 (338)
T 3ro2_A 78 --------------------------------------DQLGEAKASGNLGNTLKVL-----GNFDEAIVCCQRHLDISR 114 (338)
T ss_dssp --------------------------------------CHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------ccHHHHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHHHH
Confidence 0112356777888888777 4888888888888763
Q ss_pred --CC----HHHHHHHHHHHHcCCCCcCC--------------------HHHHHHHHHHHHHc----C----CHHHHHHHH
Q 005877 277 --GE----PQSMEFLGEIYARGAGVERN--------------------YTKALEWLTHAARQ----Q----LYSAYNGIG 322 (672)
Q Consensus 277 --~~----~~a~~~Lg~~y~~g~g~~~~--------------------~~~A~~~~~~a~~~----~----~~~a~~~Lg 322 (672)
++ ..++..+|.+|.. .++ +++|+.+++++++. + .+.++..+|
T Consensus 115 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 190 (338)
T 3ro2_A 115 ELNDKVGEARALYNLGNVYHA----KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLG 190 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH----HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhcCchHHHHHHHHHHHHHHH----cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 33 4578888888887 788 88888888888753 2 245788889
Q ss_pred HHHHcCCCCCcCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc----CC---
Q 005877 323 YLYVKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH--- 387 (672)
Q Consensus 323 ~~y~~g~g~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~--- 387 (672)
.+|.. .+++++|+.+++++++. ++ ..++.++|.+|.. .+++++|+.+|+++++. ++
T Consensus 191 ~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~ 261 (338)
T 3ro2_A 191 NTHYL-----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF----LGEFETASEYYKKTLLLARQLKDRAV 261 (338)
T ss_dssp HHHHH-----HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHH-----hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhhcchhH
Confidence 88885 57999999999998764 22 3478899999998 89999999999998763 22
Q ss_pred -HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC----C----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877 388 -QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----P----WSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (672)
Q Consensus 388 -~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~----~----~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g 454 (672)
..++..+|.++.. .+++++|+.+++++++.. + ..++..+|.++...|++++|..+++++++..
T Consensus 262 ~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 262 EAQSCYSLGNTYTL----LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 5688899999987 899999999999998763 2 3367889999999999999999999998763
No 45
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.76 E-value=7e-17 Score=165.80 Aligned_cols=254 Identities=19% Similarity=0.230 Sum_probs=154.9
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--C----HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC------
Q 005877 282 MEFLGEIYARGAGVERNYTKALEWLTHAARQQ--L----YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN------ 349 (672)
Q Consensus 282 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~----~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~------ 349 (672)
++..|..+.. .+++++|+.+|+++++.. + ..++..+|.+|.. .+++++|+.+++++++.
T Consensus 8 l~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~ 78 (338)
T 3ro2_A 8 LALEGERLCK----SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY-----LHDYAKALEYHHHDLTLARTIGD 78 (338)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHH----hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHhhcccc
Confidence 3444555555 555555555555555432 2 2344555555553 34555555555555433
Q ss_pred --CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCccCC------------
Q 005877 350 --EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH----QKAFYQLAKMFHTGVGLKKN------------ 407 (672)
Q Consensus 350 --~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~L~~~y~~g~g~~~~------------ 407 (672)
..+.++..+|.+|.. .+++++|+.+|+++++. ++ ..++..+|.+|.. .++
T Consensus 79 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~ 150 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKV----LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA----KGKSFGCPGPQDTGE 150 (338)
T ss_dssp HHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HHHTSSSSSCC----
T ss_pred cHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH----cCcccccchhhhhhh
Confidence 123455555665555 55666666666555442 11 2355555555554 455
Q ss_pred --------HHHHHHHHHHHHHcC----C----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC----HHHHHHHH
Q 005877 408 --------LHMATALYKLVAERG----P----WSSLSRWALESYLKGDVGKAFLLYSRMAEL----GY----EVAQSNAA 463 (672)
Q Consensus 408 --------~~~A~~~~~~a~~~~----~----~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~----g~----~~a~~nla 463 (672)
+++|+.+++++++.. + ..++..+|.++...|++++|+.+++++++. ++ ..++.++|
T Consensus 151 ~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 230 (338)
T 3ro2_A 151 FPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLG 230 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 566666666554431 1 224555666666666666666666666433 11 22555666
Q ss_pred HHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh----CCC----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 005877 464 WILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE----QGN----EHAALLIGDAYYYGRGTQRDYERAAEAYMHAR 535 (672)
Q Consensus 464 ~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----~~~----~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~ 535 (672)
.++.. .+++++|+.+++++.+ .++ ..+++.+|.+|. ..+++++|+.++++++
T Consensus 231 ~~~~~----------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 231 NAYIF----------------LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT----LLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHH----------------HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHH
T ss_pred HHHHH----------------cCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHH
Confidence 66655 5566666666665432 222 567789999999 8999999999999997
Q ss_pred hc----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877 536 SQ----SN----AQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA 576 (672)
Q Consensus 536 ~~----~~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 576 (672)
+. ++ ..++..||.+|.. .|++++|..++++++++.+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 291 AIAQELKDRIGEGRACWSLGNAYTA----LGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHC---
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHh
Confidence 63 33 5688999999987 89999999999999998654
No 46
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=5.2e-15 Score=170.54 Aligned_cols=356 Identities=12% Similarity=0.045 Sum_probs=275.0
Q ss_pred CCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC-----CCHHHHHHHHH--HHhccCCHHHHHHHHHHHHHHHHhh
Q 005877 121 EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG-----GNIQSKMAVAY--TYLRQDMHDKAVKLYAELAEIAVNS 193 (672)
Q Consensus 121 ~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~-----~~~~a~~~Lg~--~y~~~~~~~~A~~~y~~a~~~~~~~ 193 (672)
..+|+---.....|.. .+++.+|++.|++++.. .|......|.. +....++..+.+.-+++..
T Consensus 982 ~~~PeeVs~~vKaf~~----aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d------ 1051 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMT----ADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYD------ 1051 (1630)
T ss_pred ccCHHHhHHHHHHHHh----CCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhcc------
Confidence 3566666777777777 88999999999998843 33444444443 3333333333333333221
Q ss_pred hhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHH
Q 005877 194 FLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKA 273 (672)
Q Consensus 194 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a 273 (672)
...+|.+....|.+++|+.+|++.. ....+. ..++... +++++|++++++.
T Consensus 1052 -------------------~~eIA~Iai~lglyEEAf~IYkKa~--~~~~A~---~VLie~i-----~nldrAiE~Aerv 1102 (1630)
T 1xi4_A 1052 -------------------APDIANIAISNELFEEAFAIFRKFD--VNTSAV---QVLIEHI-----GNLDRAYEFAERC 1102 (1630)
T ss_pred -------------------HHHHHHHHHhCCCHHHHHHHHHHcC--CHHHHH---HHHHHHH-----hhHHHHHHHHHhc
Confidence 1237889999999999999999963 222221 2222233 5899999999865
Q ss_pred HHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC-CH
Q 005877 274 ADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-EA 352 (672)
Q Consensus 274 ~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~-~~ 352 (672)
..+.+++.+|..+.. .+++++|+..|.+| +++.++..++.++.. .|++++|+++|+.|.+.. ++
T Consensus 1103 ---n~p~vWsqLAKAql~----~G~~kEAIdsYiKA---dD~say~eVa~~~~~-----lGkyEEAIeyL~mArk~~~e~ 1167 (1630)
T 1xi4_A 1103 ---NEPAVWSQLAKAQLQ----KGMVKEAIDSYIKA---DDPSSYMEVVQAANT-----SGNWEELVKYLQMARKKARES 1167 (1630)
T ss_pred ---CCHHHHHHHHHHHHh----CCCHHHHHHHHHhc---CChHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhhcccc
Confidence 779999999999999 99999999999886 899999999999986 679999999999998765 44
Q ss_pred HHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 005877 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWAL 432 (672)
Q Consensus 353 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 432 (672)
.+...+|.+|.+ .+++++ ++.|. +..+...+..+|..++. .+++++|+.+|+++ ..+..++.
T Consensus 1168 ~Idt~LafaYAK----l~rlee-le~fI---~~~n~ad~~~iGd~le~----eg~YeeA~~~Y~kA------~ny~rLA~ 1229 (1630)
T 1xi4_A 1168 YVETELIFALAK----TNRLAE-LEEFI---NGPNNAHIQQVGDRCYD----EKMYDAAKLLYNNV------SNFGRLAS 1229 (1630)
T ss_pred cccHHHHHHHHh----hcCHHH-HHHHH---hCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhh------hHHHHHHH
Confidence 455679999998 777774 55553 44566778899999998 99999999999997 47889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHH
Q 005877 433 ESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGD 512 (672)
Q Consensus 433 ~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~ 512 (672)
.+...|++++|++.+++| ++..++.+.+..+.. .+++..|..+... -..+++-+..++.
T Consensus 1230 tLvkLge~q~AIEaarKA---~n~~aWkev~~acve----------------~~Ef~LA~~cgl~--Iiv~~deLeeli~ 1288 (1630)
T 1xi4_A 1230 TLVHLGEYQAAVDGARKA---NSTRTWKEVCFACVD----------------GKEFRLAQMCGLH--IVVHADELEELIN 1288 (1630)
T ss_pred HHHHhCCHHHHHHHHHHh---CCHHHHHHHHHHHhh----------------hhHHHHHHHHHHh--hhcCHHHHHHHHH
Confidence 999999999999999998 667888888777655 6778888877653 3346777779999
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCC
Q 005877 513 AYYYGRGTQRDYERAAEAYMHARSQS--NAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDP 575 (672)
Q Consensus 513 ~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 575 (672)
+|. ..|.+++|+.++++++..+ +......||.+|.+. .+++..+++++|...+++.+
T Consensus 1289 yYe----~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy--~peklmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A 1289 YYQ----DRGYFEELITMLEAALGLERAHMGMFTELAILYSKF--KPQKMREHLELFWSRVNIPK 1347 (1630)
T ss_pred HHH----HcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC--CHHHHHHHHHHHHHhcccch
Confidence 998 8999999999999998764 555667799999774 38899999999998887765
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.76 E-value=4e-17 Score=171.55 Aligned_cols=174 Identities=12% Similarity=0.051 Sum_probs=122.3
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCC-HHHHHHHHHHHHhC--CC
Q 005877 277 GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKN-YTKAKEYFEKAADN--EE 351 (672)
Q Consensus 277 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~-~~~A~~~~~~a~~~--~~ 351 (672)
+++.++..+|.++.. .+++++|+..|+++++. ++..+++.+|.++.. .++ +++|+.+|+++++. ++
T Consensus 95 ~~~~a~~~lg~~~~~----~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~-----~g~d~~eAl~~~~~al~l~P~~ 165 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQR----DERSERAFKLTRDAIELNAANYTVWHFRRVLLKS-----LQKDLHEEMNYITAIIEEQPKN 165 (382)
T ss_dssp HHHHHHHHHHHHHHH----TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCCHHHHHHHHHHHHHHCTTC
T ss_pred hhHHHHHHHHHHHHH----CCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHH-----cccCHHHHHHHHHHHHHHCCCC
Confidence 346677777777777 77788888888887765 477778888888775 444 88888888888765 47
Q ss_pred HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHH
Q 005877 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL 427 (672)
Q Consensus 352 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~ 427 (672)
+.+++++|.++.. .+++++|+..|+++++. .+..+++++|.++.. .+++++|+.+|+++++..+ ..++
T Consensus 166 ~~a~~~~g~~~~~----~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~----~g~~~eAl~~~~~al~l~P~~~~a~ 237 (382)
T 2h6f_A 166 YQVWHHRRVLVEW----LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE----FKLWDNELQYVDQLLKEDVRNNSVW 237 (382)
T ss_dssp HHHHHHHHHHHHH----HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHH
Confidence 7788888888877 77888888888887764 467778888888776 7777778888887777763 5567
Q ss_pred HHHHHHHHh-cCCHHHH-----HHHHHHHHHc--CCHHHHHHHHHHHH
Q 005877 428 SRWALESYL-KGDVGKA-----FLLYSRMAEL--GYEVAQSNAAWILD 467 (672)
Q Consensus 428 ~~lg~~~~~-~g~~~~A-----~~~~~~a~~~--g~~~a~~nla~~l~ 467 (672)
+++|.++.. .|..++| +.+|+++++. ++..++++++.++.
T Consensus 238 ~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~ 285 (382)
T 2h6f_A 238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ 285 (382)
T ss_dssp HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 777777776 4443555 3556666443 34455555555443
No 48
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.3e-16 Score=155.81 Aligned_cols=218 Identities=15% Similarity=0.142 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHc
Q 005877 160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK 239 (672)
Q Consensus 160 ~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~ 239 (672)
+.++..+|.++...|++++|+.+|+++++. .
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~------------------------------------------------~- 35 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL------------------------------------------------H- 35 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------------------------------S-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh------------------------------------------------h-
Confidence 456777888888888888888888777652 2
Q ss_pred CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CC-------HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH
Q 005877 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GE-------PQSMEFLGEIYARGAGVERNYTKALEWLTHAA 310 (672)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~-------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 310 (672)
.++.+++.+|.+|... +++++|+++|+++++. .+ +.++..+|.+|.. .+++++|+.+|++++
T Consensus 36 ~~~~~~~~~~~~~~~~-----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~ 106 (258)
T 3uq3_A 36 KDITYLNNRAAAEYEK-----GEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHK----LGDLKKTIEYYQKSL 106 (258)
T ss_dssp CCTHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHH
Confidence 4678899999999888 4999999999999874 22 6899999999999 999999999999999
Q ss_pred HcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--C
Q 005877 311 RQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--G 386 (672)
Q Consensus 311 ~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~ 386 (672)
+.... +.++.. .+++++|+..++++++.. ++.+++.+|.++.. .+++++|+.+|+++++. .
T Consensus 107 ~~~~~------~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~ 171 (258)
T 3uq3_A 107 TEHRT------ADILTK-----LRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFT----KSDWPNAVKAYTEMIKRAPE 171 (258)
T ss_dssp HHCCC------HHHHHH-----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTT
T ss_pred hcCch------hHHHHH-----HhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCcc
Confidence 86422 233433 357899999999998874 67889999999999 89999999999999874 4
Q ss_pred CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877 387 HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (672)
Q Consensus 387 ~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g 454 (672)
++.++..+|.++.. .+++++|+.+|+++++..+ +.++..+|.++...|++++|+.+|+++++..
T Consensus 172 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 172 DARGYSNRAAALAK----LMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 78899999999998 8999999999999998874 5678899999999999999999999997654
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.76 E-value=3.6e-17 Score=171.93 Aligned_cols=236 Identities=11% Similarity=0.068 Sum_probs=184.8
Q ss_pred CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHHhhhhccC
Q 005877 122 GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDM-HDKAVKLYAELAEIAVNSFLISK 198 (672)
Q Consensus 122 ~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~-~~~A~~~y~~a~~~~~~~~~~~~ 198 (672)
+++.++..+|.++.. .+++++|+.+|++++. +++..+++.+|.++...|+ +++|+.+|+++++.
T Consensus 95 ~~~~a~~~lg~~~~~----~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--------- 161 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQR----DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--------- 161 (382)
T ss_dssp HHHHHHHHHHHHHHH----TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---------
T ss_pred hhHHHHHHHHHHHHH----CCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH---------
Confidence 456788889999888 8899999999999876 7899999999999999986 99999999998763
Q ss_pred CCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--c
Q 005877 199 DSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--K 276 (672)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~ 276 (672)
++.++.+++.+|.++... +++++|+..|+++++ +
T Consensus 162 ---------------------------------------~P~~~~a~~~~g~~~~~~-----g~~~eAl~~~~kal~ldP 197 (382)
T 2h6f_A 162 ---------------------------------------QPKNYQVWHHRRVLVEWL-----RDPSQELEFIADILNQDA 197 (382)
T ss_dssp ---------------------------------------CTTCHHHHHHHHHHHHHH-----TCCTTHHHHHHHHHHHCT
T ss_pred ---------------------------------------CCCCHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHhCc
Confidence 456788888999988877 488899999999887 4
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHH-----HHHHHHHHhC
Q 005877 277 GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKA-----KEYFEKAADN 349 (672)
Q Consensus 277 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A-----~~~~~~a~~~ 349 (672)
+++.+++++|.++.. .+++++|+.+|+++++. ++..+++.+|.++..- .+..++| +.+|+++++.
T Consensus 198 ~~~~a~~~lg~~~~~----~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l----~~~~~eA~~~~el~~~~~Al~l 269 (382)
T 2h6f_A 198 KNYHAWQHRQWVIQE----FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT----TGYNDRAVLEREVQYTLEMIKL 269 (382)
T ss_dssp TCHHHHHHHHHHHHH----HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCSCSHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----cCcchHHHHHHHHHHHHHHHHH
Confidence 688899999999988 88889999999998875 4788899999988751 2232555 5888888775
Q ss_pred --CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCC-C---ccCC-HHHHHHHHHHH-H
Q 005877 350 --EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGV-G---LKKN-LHMATALYKLV-A 419 (672)
Q Consensus 350 --~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~-g---~~~~-~~~A~~~~~~a-~ 419 (672)
++..+++++|.++.. .| ..++++|++.++++ + ..++.++..||.+|.... . ..++ .++|+.+|+++ +
T Consensus 270 ~P~~~~a~~~l~~ll~~-~g-~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~ 346 (382)
T 2h6f_A 270 VPHNESAWNYLKGILQD-RG-LSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAK 346 (382)
T ss_dssp STTCHHHHHHHHHHHTT-TC-GGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc-cC-ccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 578899999988877 11 23688888888877 4 346788888888887610 0 0022 58888888888 6
Q ss_pred HcCChh
Q 005877 420 ERGPWS 425 (672)
Q Consensus 420 ~~~~~~ 425 (672)
+.+|..
T Consensus 347 ~~DP~r 352 (382)
T 2h6f_A 347 EKDTIR 352 (382)
T ss_dssp TTCGGG
T ss_pred HhCchh
Confidence 776544
No 50
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=4.4e-15 Score=164.12 Aligned_cols=407 Identities=9% Similarity=-0.026 Sum_probs=268.0
Q ss_pred HhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhc
Q 005877 119 AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLI 196 (672)
Q Consensus 119 ~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~ 196 (672)
.+|.+..++..++.. .. .+++++|...|++++. +.+...+..++..+...|++++|+..|++++...|.
T Consensus 8 ~~P~~~~~w~~l~~~-~~----~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~---- 78 (530)
T 2ooe_A 8 ENPYDLDAWSILIRE-AQ----NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH---- 78 (530)
T ss_dssp HCTTCHHHHHHHHHH-HH----SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC----
T ss_pred hCCCCHHHHHHHHHH-HH----hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----
Confidence 456778888888874 44 6788888888888887 678888888888888888888888888888764221
Q ss_pred cCCCCcccchhcccCchhhhh-HhhhccCChHHHHH----HHHHHHHc-----CCHHHHHHHHHHHHhcCC----CcccC
Q 005877 197 SKDSPVIEPIRIHNGAEENKG-ALRKSRGEDDEAFQ----ILEYQAQK-----GNAGAMYKIGLFYYFGLR----GLRRD 262 (672)
Q Consensus 197 ~~~~~~~~~~~l~~~~~~~~~-~~~~~~g~~~~Ai~----~~~~aa~~-----~~~~a~~~Lg~~y~~~~~----~~~~~ 262 (672)
. ......+ .+....|+.++|.+ .|+++.+. .+...+...+.+...... ...++
T Consensus 79 ------~-------~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 145 (530)
T 2ooe_A 79 ------I-------DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQR 145 (530)
T ss_dssp ------H-------HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHH
T ss_pred ------h-------HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhH
Confidence 0 0011111 22234566665554 66666543 355666666666543100 00258
Q ss_pred HHHHHHHHHHHHHcCC-H--HHHHHHHHHHHc-C--------CCCcCCHHHHHHHHHH------HHHcC------C----
Q 005877 263 RTKALMWFSKAADKGE-P--QSMEFLGEIYAR-G--------AGVERNYTKALEWLTH------AARQQ------L---- 314 (672)
Q Consensus 263 ~~~A~~~~~~a~~~~~-~--~a~~~Lg~~y~~-g--------~g~~~~~~~A~~~~~~------a~~~~------~---- 314 (672)
+++|...|+++++... . ..+.....+-.. | ....+++.+|...|+. +++.. .
T Consensus 146 ~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 225 (530)
T 2ooe_A 146 ITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQ 225 (530)
T ss_dssp HHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CC
T ss_pred HHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChh
Confidence 8999999999987421 1 111111111000 0 0014567778777765 33321 1
Q ss_pred ----HHHHHHHHHHHHcCCCCCcCCH----HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCC---chhcHH-------H
Q 005877 315 ----YSAYNGIGYLYVKGYGVEKKNY----TKAKEYFEKAADN--EEAGGHYNLGVMYYKGIG---VKRDVK-------L 374 (672)
Q Consensus 315 ----~~a~~~Lg~~y~~g~g~~~~~~----~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g---~~~~~~-------~ 374 (672)
...+....... .+.....++. ..++..|++++.. .++++++.+|.++..... ..|+++ +
T Consensus 226 ~~~~~~~w~~~~~~e-~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 304 (530)
T 2ooe_A 226 EAQQVDMWKKYIQWE-KSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE 304 (530)
T ss_dssp HHHHHHHHHHHHHHH-HHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHH
Confidence 11222211111 1111011232 4788899999875 689999999998874000 035655 8
Q ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh---hHHHHHHHHHHhcCCHHHHHHHHH
Q 005877 375 ACKYFLVAAN---AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW---SSLSRWALESYLKGDVGKAFLLYS 448 (672)
Q Consensus 375 A~~~~~~A~~---~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~---~a~~~lg~~~~~~g~~~~A~~~~~ 448 (672)
|+..|++|++ +.+...+..++.++.. .+++++|...|+++++..|. .++..++..+...|++++|+..|+
T Consensus 305 A~~~~~~Al~~~~p~~~~l~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 305 AANIYERAISTLLKKNMLLYFAYADYEES----RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHHHHTTTTCSSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHh----cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999986 4578899999999987 78999999999999998753 367777888888899999999999
Q ss_pred HHHHcCCH--HHHHHHHHH-HHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhCCCCCCC
Q 005877 449 RMAELGYE--VAQSNAAWI-LDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS--EQGNEHAALLIGDAYYYGRGTQRD 523 (672)
Q Consensus 449 ~a~~~g~~--~a~~nla~~-l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lG~~y~~g~g~~~d 523 (672)
+|++.... ......+++ +.. .++.++|..+|++++ .++++..+..++.++. ..++
T Consensus 381 ~Al~~~~~~~~~~~~~a~~~~~~----------------~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~----~~g~ 440 (530)
T 2ooe_A 381 KAREDARTRHHVYVTAALMEYYC----------------SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS----HLNE 440 (530)
T ss_dssp HHHTCTTCCTHHHHHHHHHHHHH----------------TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT----TTTC
T ss_pred HHHhccCCchHHHHHHHHHHHHH----------------cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHH----hCCC
Confidence 99876432 333333333 122 457899999999865 4567899999999988 7899
Q ss_pred HHHHHHHHHHHHhcC--CHH----HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877 524 YERAAEAYMHARSQS--NAQ----AMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA 576 (672)
Q Consensus 524 ~~~A~~~~~~A~~~~--~~~----a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 576 (672)
+++|..+|++|+... ++. .+......... .||.+.+...++++++.-|+
T Consensus 441 ~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~----~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 441 DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN----IGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHH----SSCHHHHHHHHHHHHHHTHH
T ss_pred HhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCch
Confidence 999999999998752 332 44444444333 57999999999999998874
No 51
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=3.2e-16 Score=158.95 Aligned_cols=206 Identities=12% Similarity=0.087 Sum_probs=146.1
Q ss_pred hhhccCChHHHHHHHHHHH----HcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC
Q 005877 219 LRKSRGEDDEAFQILEYQA----QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAG 294 (672)
Q Consensus 219 ~~~~~g~~~~Ai~~~~~aa----~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g 294 (672)
.+...++.++|++.+++++ .++++.+++.+|.++... +++++|+++|++ ++++.++..+|.+|..
T Consensus 74 ~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~-----g~~~~Al~~l~~---~~~~~~~~~l~~~~~~--- 142 (291)
T 3mkr_A 74 YLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYD-----QNPDAALRTLHQ---GDSLECMAMTVQILLK--- 142 (291)
T ss_dssp HHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHT-----TCHHHHHHHHTT---CCSHHHHHHHHHHHHH---
T ss_pred HHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHhC---CCCHHHHHHHHHHHHH---
Confidence 3334444444444444433 256888899999999888 499999999988 7888999999999998
Q ss_pred CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcH
Q 005877 295 VERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDV 372 (672)
Q Consensus 295 ~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~ 372 (672)
.+++++|+..|+++++.........++..+..- ....+++++|+..|+++++. +++.+++++|.++.. .|++
T Consensus 143 -~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l-~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~ 216 (291)
T 3mkr_A 143 -LDRLDLARKELKKMQDQDEDATLTQLATAWVSL-AAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA----QGRW 216 (291)
T ss_dssp -TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH----TTCH
T ss_pred -CCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH-HhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCH
Confidence 899999999999988764222333333222110 00135899999999999875 578889999999998 8999
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHH-HHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHH
Q 005877 373 KLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHM-ATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLY 447 (672)
Q Consensus 373 ~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~-A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~ 447 (672)
++|...|+++++ ++++.+++++|.++.. .++.++ +..+++++++..|...... ....+.+.++++..-|
T Consensus 217 ~eA~~~l~~al~~~p~~~~~l~~l~~~~~~----~g~~~eaa~~~~~~~~~~~P~~~~~~--d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 217 EAAEGVLQEALDKDSGHPETLINLVVLSQH----LGKPPEVTNRYLSQLKDAHRSHPFIK--EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhCCCChHHH--HHHHHHHHHHHHHHHc
Confidence 999999999877 4578899999988887 666654 6788899988887654332 1223334445544433
No 52
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.73 E-value=2.9e-16 Score=165.90 Aligned_cols=219 Identities=14% Similarity=0.117 Sum_probs=133.6
Q ss_pred HHHHHHcCCCCCcCCHHHHHHHHHHHHhC----C----CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc----C--
Q 005877 321 IGYLYVKGYGVEKKNYTKAKEYFEKAADN----E----EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----G-- 386 (672)
Q Consensus 321 Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~-- 386 (672)
+|.++.. .|++++|+.+|+++++. + .+.+++++|.+|.. .+++++|+.+|++|++. +
T Consensus 109 ~g~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 109 RGMYELD-----QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYY----MKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHH-----TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHH-----hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCccc
Confidence 5555543 34566666666666543 1 23455566666655 55666666666665541 1
Q ss_pred ---CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC----C----hhHHHHHHHHHHhcCCHHHHHHHHHHHHH---
Q 005877 387 ---HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----P----WSSLSRWALESYLKGDVGKAFLLYSRMAE--- 452 (672)
Q Consensus 387 ---~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~----~----~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--- 452 (672)
...++.++|.+|.. .+++++|+.+|+++++.. + ..++.++|.++...|++++|+.+|+++++
T Consensus 180 ~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 255 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLD----LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFE 255 (383)
T ss_dssp HHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 12455566666655 566666666666665442 1 12455566666666666666666666655
Q ss_pred -----cCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhC----CCH---HHHHHHHHHHHhCCCC
Q 005877 453 -----LGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ----GNE---HAALLIGDAYYYGRGT 520 (672)
Q Consensus 453 -----~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~---~a~~~lG~~y~~g~g~ 520 (672)
.+...++.++|.++.. .+++++|+.+++++.+. +++ ..+..+|.+|. .
T Consensus 256 ~~~~~~~~~~~~~~l~~~~~~----------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~----~ 315 (383)
T 3ulq_A 256 ESNILPSLPQAYFLITQIHYK----------------LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYL----S 315 (383)
T ss_dssp HTTCGGGHHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT----S
T ss_pred hhccchhHHHHHHHHHHHHHH----------------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh----C
Confidence 2234455566666655 45566666666654332 222 22457899998 7
Q ss_pred CCC---HHHHHHHHHHHHhc-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877 521 QRD---YERAAEAYMHARSQ-SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA 576 (672)
Q Consensus 521 ~~d---~~~A~~~~~~A~~~-~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 576 (672)
.++ +.+|+.++++.-.. ....++..||.+|.. .|++++|..+|++|+++...
T Consensus 316 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~----~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 316 GPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHE----RKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHTS
T ss_pred CCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHH
Confidence 777 88888888877322 345688899999988 89999999999999987543
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.72 E-value=3.8e-16 Score=146.48 Aligned_cols=139 Identities=24% Similarity=0.206 Sum_probs=86.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CC
Q 005877 239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QL 314 (672)
Q Consensus 239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~ 314 (672)
+.++.+++.+|.+|... +++++|+..++++.. +.++.+...+|.++.. .+++++|+..++++++. .+
T Consensus 36 p~~~~~~~~la~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~a~~~~~~~ 106 (184)
T 3vtx_A 36 PNNVETLLKLGKTYMDI-----GLPNDAIESLKKFVVLDTTSAEAYYILGSANFM----IDEKQAAIDALQRAIALNTVY 106 (184)
T ss_dssp TTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTC
T ss_pred CCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccc
Confidence 34566666666666665 366666666666654 3456666666666666 66666666666666543 35
Q ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHH
Q 005877 315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFY 392 (672)
Q Consensus 315 ~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~ 392 (672)
+.++..+|.+|.. .|++++|+.+|+++++. +++.+++++|.+|.. .+++++|+.+|++|++..+..+.+
T Consensus 107 ~~~~~~lg~~~~~-----~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~a~~ 177 (184)
T 3vtx_A 107 ADAYYKLGLVYDS-----MGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG----KGLRDEAVKYFKKALEKEEKKAKY 177 (184)
T ss_dssp HHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTHHHHHH
T ss_pred hHHHHHHHHHHHH-----hCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH----CCCHHHHHHHHHHHHhCCccCHHH
Confidence 6666666666664 45666666666666554 356666666666666 666666666666666665555555
Q ss_pred HHH
Q 005877 393 QLA 395 (672)
Q Consensus 393 ~L~ 395 (672)
+||
T Consensus 178 ~la 180 (184)
T 3vtx_A 178 ELA 180 (184)
T ss_dssp CSC
T ss_pred HHH
Confidence 544
No 54
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.71 E-value=4.9e-16 Score=164.19 Aligned_cols=223 Identities=14% Similarity=0.103 Sum_probs=181.9
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----C----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC---
Q 005877 281 SMEFLGEIYARGAGVERNYTKALEWLTHAARQ----Q----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--- 349 (672)
Q Consensus 281 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~----~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--- 349 (672)
.++.+|.++.. .+++++|+.+|+++++. + .+.+++.+|.+|.. .+++++|+.++++|++.
T Consensus 105 ~~~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~-----~~~~~~A~~~~~~al~~~~~ 175 (383)
T 3ulq_A 105 FNFFRGMYELD----QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYY-----MKQTYFSMDYARQAYEIYKE 175 (383)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH----hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHh
Confidence 44558999998 99999999999999874 2 45689999999996 67999999999999864
Q ss_pred -C-----CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCccCCHHHHHHHH
Q 005877 350 -E-----EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH----QKAFYQLAKMFHTGVGLKKNLHMATALY 415 (672)
Q Consensus 350 -~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~L~~~y~~g~g~~~~~~~A~~~~ 415 (672)
+ .+.++.++|.+|.. .+++++|+.+|++|++. ++ ..+++++|.+|.. .+++++|+.+|
T Consensus 176 ~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~ 247 (383)
T 3ulq_A 176 HEAYNIRLLQCHSLFATNFLD----LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS----QSQYEDAIPYF 247 (383)
T ss_dssp CSTTHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH----CCCHHHHHHHH
Confidence 2 25688999999999 99999999999999863 22 3589999999998 99999999999
Q ss_pred HHHHHc-----C-C--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCHHH---HHHHHHHHHHhCCCCcccCCCC
Q 005877 416 KLVAER-----G-P--WSSLSRWALESYLKGDVGKAFLLYSRMAEL----GYEVA---QSNAAWILDKYGEGSMCMGESG 480 (672)
Q Consensus 416 ~~a~~~-----~-~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~----g~~~a---~~nla~~l~~~~~~~~~~~~~~ 480 (672)
+++++. . + +.++..+|.++...|++++|+.+++++++. +++.. ..+++.++...+.
T Consensus 248 ~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~--------- 318 (383)
T 3ulq_A 248 KRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD--------- 318 (383)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC---------
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc---------
Confidence 999983 3 2 346899999999999999999999999765 23322 3557777655221
Q ss_pred CCCchHhHHHHHHHHHHHHhC-CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 005877 481 FCTDAERHQCAHSLWWQASEQ-GNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ 537 (672)
Q Consensus 481 ~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~ 537 (672)
.+.+++|+.++++.... ....++..||.+|. ..+++++|..+|+++++.
T Consensus 319 ----~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~----~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 319 ----EEAIQGFFDFLESKMLYADLEDFAIDVAKYYH----ERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHH
Confidence 24588999999876222 22567789999999 899999999999999763
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.70 E-value=5.5e-16 Score=154.95 Aligned_cols=183 Identities=13% Similarity=0.023 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHH
Q 005877 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYS 316 (672)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~ 316 (672)
++.++..+|.+|... +++++|+.+|+++++ +.++.++..+|.+|.. .+++++|+.+|+++++. +++.
T Consensus 76 ~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~ 146 (275)
T 1xnf_A 76 MPEVFNYLGIYLTQA-----GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY----GGRDKLAQDDLLAFYQDDPNDPF 146 (275)
T ss_dssp CHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCChH
Confidence 344444444444444 244444444444444 2344444555555544 44555555555554432 2333
Q ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCC------HH
Q 005877 317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGH------QK 389 (672)
Q Consensus 317 a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~------~~ 389 (672)
....++..+. .+++++|+.++++++... .....+.++.++.. .++.++|+..++++++... +.
T Consensus 147 ~~~~~~~~~~------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 216 (275)
T 1xnf_A 147 RSLWLYLAEQ------KLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLG----NISEQTLMERLKADATDNTSLAEHLSE 216 (275)
T ss_dssp HHHHHHHHHH------HHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTT----SSCHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHHHHHHHH------hcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH----hcCHHHHHHHHHHHhcccccccccccH
Confidence 3333333322 235555555555554431 11112234444444 4455556666655544322 45
Q ss_pred HHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHH
Q 005877 390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLY 447 (672)
Q Consensus 390 a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~ 447 (672)
+++.+|.+|.. .+++++|+.+|+++++..|.. ....+..+...|++++|+..|
T Consensus 217 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 217 TNFYLGKYYLS----LGDLDSATALFKLAVANNVHN-FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHTTCCTT-CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHhCCchh-HHHHHHHHHHHHHHHhhHHHH
Confidence 66666766665 667777777777776665432 223355566666666666655
No 56
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=1e-13 Score=153.15 Aligned_cols=383 Identities=11% Similarity=-0.002 Sum_probs=265.6
Q ss_pred HHHHH--hCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHH
Q 005877 151 HHFAA--EGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDE 228 (672)
Q Consensus 151 ~~~A~--~~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~ 228 (672)
+++++ ++.+..++..++.. ...+++++|...|+++++..|... ..+...+......|++++
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~----------------~~w~~~~~~~~~~~~~~~ 64 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSG----------------RFWKLYIEAEIKAKNYDK 64 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCH----------------HHHHHHHHHHHHTTCHHH
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCH----------------HHHHHHHHHHHhcCCHHH
Confidence 34444 47899999999984 778999999999999988654321 234456777888999999
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCcccCHHH----HHHHHHHHHHc-----CCHHHHHHHHHHHHcCCCC---
Q 005877 229 AFQILEYQAQK-GNAGAMYKIGLFYYFGLRGLRRDRTK----ALMWFSKAADK-----GEPQSMEFLGEIYARGAGV--- 295 (672)
Q Consensus 229 Ai~~~~~aa~~-~~~~a~~~Lg~~y~~~~~~~~~~~~~----A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~--- 295 (672)
|...|++++.. .+.+.+..++....... ++++. +...|+++++. .+...+..++.+......+
T Consensus 65 a~~~~~ral~~~p~~~lw~~~~~~~~~~~----~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~ 140 (530)
T 2ooe_A 65 VEKLFQRCLMKVLHIDLWKCYLSYVRETK----GKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSY 140 (530)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHHT----TTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSST
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHc----cchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccH
Confidence 99999999766 36777777776443321 24444 44588888763 3566666677665532111
Q ss_pred --cCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHH-cC-------CCCCcCCHHHHHHHHHH------HHhCC----C-
Q 005877 296 --ERNYTKALEWLTHAARQQLY---SAYNGIGYLYV-KG-------YGVEKKNYTKAKEYFEK------AADNE----E- 351 (672)
Q Consensus 296 --~~~~~~A~~~~~~a~~~~~~---~a~~~Lg~~y~-~g-------~g~~~~~~~~A~~~~~~------a~~~~----~- 351 (672)
.+++++|...|+++++.... ..+.....+.. .| .....+++.+|...|+. +++.. .
T Consensus 141 ~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 141 AENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp THHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred HHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 47899999999999985321 11111111100 00 00012467788877765 33321 1
Q ss_pred ---------HHHHHHHHHHHHcCCCchhc----HHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCC---ccCCHH----
Q 005877 352 ---------AGGHYNLGVMYYKGIGVKRD----VKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVG---LKKNLH---- 409 (672)
Q Consensus 352 ---------~~a~~~Lg~~y~~g~g~~~~----~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g---~~~~~~---- 409 (672)
...+......-.......++ ..+++..|++++. +.++..++.+|.++..... ..++.+
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~ 300 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL 300 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhh
Confidence 12222222221111000122 3578899999987 5689999999999873000 036665
Q ss_pred ---HHHHHHHHHHH-cC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CH-HHHHHHHHHHHHhCCCCcccCCCC
Q 005877 410 ---MATALYKLVAE-RG--PWSSLSRWALESYLKGDVGKAFLLYSRMAELG--YE-VAQSNAAWILDKYGEGSMCMGESG 480 (672)
Q Consensus 410 ---~A~~~~~~a~~-~~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g--~~-~a~~nla~~l~~~~~~~~~~~~~~ 480 (672)
+|+..|+++++ .. +...+..++..+...|++++|...|+++++.. ++ .++.+++.++.+
T Consensus 301 ~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~------------ 368 (530)
T 2ooe_A 301 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR------------ 368 (530)
T ss_dssp HHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHH------------
T ss_pred hhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHH------------
Confidence 99999999997 44 35677888999999999999999999998875 33 578888888877
Q ss_pred CCCchHhHHHHHHHHHHHHhCCC--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCC
Q 005877 481 FCTDAERHQCAHSLWWQASEQGN--EHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGL 556 (672)
Q Consensus 481 ~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~ 556 (672)
.+++++|...|+++.+..+ ...+...+.+.+. ..+++++|..+|+++++ ++++..+.+++.++..
T Consensus 369 ----~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~---~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~---- 437 (530)
T 2ooe_A 369 ----AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY---CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH---- 437 (530)
T ss_dssp ----HHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHH---HTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----
T ss_pred ----hcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHH---HcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHh----
Confidence 7899999999999987654 4455555655331 47899999999999987 4789999999999876
Q ss_pred CCCHHHHHHHHHHHHhcCCCC
Q 005877 557 PLDLHLAKRYYDQALEVDPAA 577 (672)
Q Consensus 557 ~~d~~~A~~~~~~A~~~~~~~ 577 (672)
.|+.++|+.+|++|+...|..
T Consensus 438 ~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 438 LNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp TTCHHHHHHHHHHHHHSCCSC
T ss_pred CCCHhhHHHHHHHHHhccCCC
Confidence 799999999999999987653
No 57
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.70 E-value=1.2e-15 Score=142.98 Aligned_cols=169 Identities=15% Similarity=0.121 Sum_probs=145.3
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHH
Q 005877 278 EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAG 353 (672)
Q Consensus 278 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~ 353 (672)
++..++.||.+|.. .|++++|+.+|+++++. +++.++..+|.+|.. .+++++|+..++++... .++.
T Consensus 4 ~~~iy~~lG~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~ 74 (184)
T 3vtx_A 4 TTTIYMDIGDKKRT----KGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMD-----IGLPNDAIESLKKFVVLDTTSAE 74 (184)
T ss_dssp CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCCCCHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHhcCchhHH
Confidence 56788899999998 89999999999999875 588899999999986 57999999999998765 5788
Q ss_pred HHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHH
Q 005877 354 GHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSR 429 (672)
Q Consensus 354 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~ 429 (672)
++..+|.++.. .+++++|...+.++.+ +.+..++..+|.+|.. .+++++|+.+|+++++..| +.++.+
T Consensus 75 ~~~~~~~~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~ 146 (184)
T 3vtx_A 75 AYYILGSANFM----IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS----MGEHDKAIEAYEKTISIKPGFIRAYQS 146 (184)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----hCCchhHHHHHHHHHHhcchhhhHHHH
Confidence 89999999988 8899999999999877 4578889999999988 8999999999999998874 567889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005877 430 WALESYLKGDVGKAFLLYSRMAELGYEVAQSNAA 463 (672)
Q Consensus 430 lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla 463 (672)
+|.++...|++++|+.+|++|++.+...+.+++|
T Consensus 147 lg~~~~~~g~~~~A~~~~~~al~~~p~~a~~~la 180 (184)
T 3vtx_A 147 IGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELA 180 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTHHHHHHCSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCCccCHHHHHH
Confidence 9999999999999999999999887766665554
No 58
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.69 E-value=2.8e-15 Score=149.71 Aligned_cols=214 Identities=16% Similarity=0.059 Sum_probs=136.0
Q ss_pred CCHHHHHHHHHHHHhC------CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCcc
Q 005877 334 KNYTKAKEYFEKAADN------EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLK 405 (672)
Q Consensus 334 ~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~ 405 (672)
+++++|+.+|+++++. +++.+++.+|.+|.. .+++++|+.+|+++++. .++.++..+|.+|.. .
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~ 90 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDS----LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ----A 90 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----T
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHH----cccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----c
Confidence 4556666666666553 234555666666666 56666666666666553 345666666666665 5
Q ss_pred CCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcccCCCCC
Q 005877 406 KNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGF 481 (672)
Q Consensus 406 ~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g--~~~a~~nla~~l~~~~~~~~~~~~~~~ 481 (672)
+++++|+.+|+++++..+ +.++..+|.++...|++++|+.+|+++++.. +......++.. ..
T Consensus 91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~------------- 156 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQ------------- 156 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HH-------------
T ss_pred cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HH-------------
Confidence 666666666666666542 4456666666666666666666666665443 33333333222 22
Q ss_pred CCchHhHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC------CHHHHHHHHHHHHcCC
Q 005877 482 CTDAERHQCAHSLWWQASEQGN-EHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQS------NAQAMFNLGYMHEHGQ 554 (672)
Q Consensus 482 ~~~~~~~~~A~~~~~~a~~~~~-~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~------~~~a~~~Lg~~y~~g~ 554 (672)
.+++++|+..++++....+ ....+.++.++. ..++.++|+..++++++.. ++.+++.+|.+|..
T Consensus 157 ---~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-- 227 (275)
T 1xnf_A 157 ---KLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYL----GNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLS-- 227 (275)
T ss_dssp ---HHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHT----TSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHH--
T ss_pred ---hcCHHHHHHHHHHHHhcCCcchHHHHHHHHHH----HhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHH--
Confidence 4567777777765544322 122345666666 6778899999999987653 26889999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCcch
Q 005877 555 GLPLDLHLAKRYYDQALEVDPAAKLP 580 (672)
Q Consensus 555 g~~~d~~~A~~~~~~A~~~~~~~~~~ 580 (672)
.|++++|+.+|+++++.+|+....
T Consensus 228 --~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 228 --LGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp --TTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred --cCCHHHHHHHHHHHHhCCchhHHH
Confidence 899999999999999999876543
No 59
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.68 E-value=2.6e-15 Score=158.38 Aligned_cols=156 Identities=14% Similarity=0.100 Sum_probs=124.8
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----C----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC---
Q 005877 281 SMEFLGEIYARGAGVERNYTKALEWLTHAARQ----Q----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--- 349 (672)
Q Consensus 281 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~----~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--- 349 (672)
.++.+|..+.. .+++++|+.+|+++++. + .+.+++.+|.+|.. .+++++|+.++++|++.
T Consensus 103 ~~~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~-----~~~~~~A~~~~~~al~~~~~ 173 (378)
T 3q15_A 103 SLFFRGMYEFD----QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYH-----MKQTHVSMYHILQALDIYQN 173 (378)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH----HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHH-----cCCcHHHHHHHHHHHHHHHh
Confidence 56778888888 89999999999999864 2 35678889999886 56999999999998763
Q ss_pred -C-----CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCccCCHHHHHHHH
Q 005877 350 -E-----EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH----QKAFYQLAKMFHTGVGLKKNLHMATALY 415 (672)
Q Consensus 350 -~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~L~~~y~~g~g~~~~~~~A~~~~ 415 (672)
+ .+.+++++|.+|.. .+++++|+.+|++|++. ++ ..++.++|.+|.. .+++++|+.+|
T Consensus 174 ~~~~~~~~~~~~~~lg~~y~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~~~~~~A~~~~ 245 (378)
T 3q15_A 174 HPLYSIRTIQSLFVIAGNYDD----FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR----SGDDQMAVEHF 245 (378)
T ss_dssp STTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----CCCHHHHHHHH
Confidence 1 25577889999988 88999999999998763 22 4577888988887 88999999999
Q ss_pred HHHHH-----cCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 416 KLVAE-----RGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 416 ~~a~~-----~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
+++++ ..+ +.++..+|.++...|++++|+.+++++++.
T Consensus 246 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 98887 332 346778888888888888888888888764
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.66 E-value=5.7e-15 Score=160.59 Aligned_cols=204 Identities=15% Similarity=0.092 Sum_probs=178.5
Q ss_pred ChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCH-HHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCH
Q 005877 225 EDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDR-TKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNY 299 (672)
Q Consensus 225 ~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~-~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~ 299 (672)
..++++..++..... .++.+++.+|.+|... +++ ++|+++|+++++ ++++.+++.+|.+|.. .+++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~-----g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~ 153 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVT-----PDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWK----KGDV 153 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSS-----SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCH
Confidence 355666666665443 5899999999999877 499 999999999987 4689999999999999 9999
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCCc---------CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCC
Q 005877 300 TKALEWLTHAARQQ-LYSAYNGIGYLYVKGYGVEK---------KNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIG 367 (672)
Q Consensus 300 ~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~---------~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g 367 (672)
++|+.+|+++++.. +..++..+|.+|.. . +++++|+.+|+++++. +++.+++++|.+|..
T Consensus 154 ~~A~~~~~~al~~~p~~~~~~~lg~~~~~-----~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--- 225 (474)
T 4abn_A 154 TSAHTCFSGALTHCKNKVSLQNLSMVLRQ-----LQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLS--- 225 (474)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHTT-----CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHH-----hccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---
Confidence 99999999999764 57889999999985 5 7999999999999876 589999999999988
Q ss_pred ch--------hcHHHHHHHHHHHHH--c---CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHH
Q 005877 368 VK--------RDVKLACKYFLVAAN--A---GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWAL 432 (672)
Q Consensus 368 ~~--------~~~~~A~~~~~~A~~--~---~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~ 432 (672)
. +++++|+.+|+++++ + .++.+++++|.+|.. .+++++|+.+|+++++..| +.++..++.
T Consensus 226 -~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~a~~~l~~ 300 (474)
T 4abn_A 226 -LYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY----EESYGEALEGFSQAAALDPAWPEPQQREQQ 300 (474)
T ss_dssp -HHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred -HHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 7 999999999999987 4 578999999999998 8999999999999999874 567899999
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 005877 433 ESYLKGDVGKAFLLYSRM 450 (672)
Q Consensus 433 ~~~~~g~~~~A~~~~~~a 450 (672)
++...|++++|+..+.+.
T Consensus 301 ~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 301 LLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 999999999999877654
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.66 E-value=7e-15 Score=159.90 Aligned_cols=202 Identities=19% Similarity=0.182 Sum_probs=178.0
Q ss_pred CHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCH-HHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCH
Q 005877 262 DRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNY-TKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNY 336 (672)
Q Consensus 262 ~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~-~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~ 336 (672)
.+++++..+++... ..++.+++.+|.+|.. .+++ ++|+.+|+++++. +++.+++.||.+|.. .|++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-----~g~~ 153 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNV----TPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWK-----KGDV 153 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTS----SSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----HTCH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHh----ccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-----cCCH
Confidence 46777777776655 3579999999999999 9999 9999999999875 479999999999996 6799
Q ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCch---------hcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCc
Q 005877 337 TKAKEYFEKAADNE-EAGGHYNLGVMYYKGIGVK---------RDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGL 404 (672)
Q Consensus 337 ~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~---------~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~ 404 (672)
++|+.+|+++++.+ ++.++.++|.+|.. . +++++|+.+|+++++. .++.+++++|.+|..
T Consensus 154 ~~A~~~~~~al~~~p~~~~~~~lg~~~~~----~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---- 225 (474)
T 4abn_A 154 TSAHTCFSGALTHCKNKVSLQNLSMVLRQ----LQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLS---- 225 (474)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHTT----CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHH----hccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----
Confidence 99999999999874 57999999999998 7 9999999999999874 578999999999986
Q ss_pred c--------CCHHHHHHHHHHHHHcCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHh
Q 005877 405 K--------KNLHMATALYKLVAERGP-----WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKY 469 (672)
Q Consensus 405 ~--------~~~~~A~~~~~~a~~~~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~ 469 (672)
. +++++|+.+|+++++..| +.+++++|.++...|++++|+.+|+++++. ++..++.+++.++..
T Consensus 226 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~- 304 (474)
T 4abn_A 226 LYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEF- 304 (474)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred HHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Confidence 6 899999999999998765 567999999999999999999999999665 688899999999988
Q ss_pred CCCCcccCCCCCCCchHhHHHHHHHHH
Q 005877 470 GEGSMCMGESGFCTDAERHQCAHSLWW 496 (672)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~A~~~~~ 496 (672)
.+++++|+..+.
T Consensus 305 ---------------lg~~~eAi~~~~ 316 (474)
T 4abn_A 305 ---------------LSRLTSLLESKG 316 (474)
T ss_dssp ---------------HHHHHHHHHHTT
T ss_pred ---------------HHHHHHHHHHhc
Confidence 778888877544
No 62
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.66 E-value=1.6e-14 Score=142.54 Aligned_cols=195 Identities=16% Similarity=0.133 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHH
Q 005877 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL 427 (672)
Q Consensus 352 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~ 427 (672)
+.+++.+|.++.. .+++++|+.+|+++++. .+..+++.+|.++.. .+++++|+.+|+++++..+ +.++
T Consensus 37 ~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~ 108 (252)
T 2ho1_A 37 RDAYIQLGLGYLQ----RGNTEQAKVPLRKALEIDPSSADAHAALAVVFQT----EMEPKLADEEYRKALASDSRNARVL 108 (252)
T ss_dssp HHHHHHHHHHHHH----TTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCcHHHH
Confidence 4445555555555 55555555555555542 245555555555554 5555566666655555542 3345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh--C
Q 005877 428 SRWALESYLKGDVGKAFLLYSRMAE----LGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE--Q 501 (672)
Q Consensus 428 ~~lg~~~~~~g~~~~A~~~~~~a~~----~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~ 501 (672)
..+|..+...|++++|+.+|+++++ ..+..++.++|.++.. .+++++|+.+++++.+ +
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~----------------~g~~~~A~~~~~~~~~~~~ 172 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ----------------MKKPAQAKEYFEKSLRLNR 172 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHhcCc
Confidence 5555556666666666666666654 2234555556665555 4456666666665433 4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877 502 GNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK 578 (672)
Q Consensus 502 ~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 578 (672)
.++.+++.+|.+|. ..+++++|+.+++++++. .++.++..++.++.. .+++++|.++++++++..|+..
T Consensus 173 ~~~~~~~~la~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 173 NQPSVALEMADLLY----KEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKV----FEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp CCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTSH
T ss_pred ccHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHCCCCH
Confidence 56788889999999 889999999999999874 678899999999887 8899999999999999988754
No 63
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.65 E-value=6.9e-15 Score=155.08 Aligned_cols=228 Identities=17% Similarity=0.134 Sum_probs=178.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCC
Q 005877 162 SKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGN 241 (672)
Q Consensus 162 a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~ 241 (672)
.++.+|..+...|++++|+.+|+++++..... ++ ....
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~------------------------------~~------------~~~~ 140 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFV------------------------------SD------------DIEK 140 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC------------------------------CC------------HHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC------------------------------CC------------hHHH
Confidence 45567777888888888888888876532110 00 1124
Q ss_pred HHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc----C-----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 005877 242 AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----G-----EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ 312 (672)
Q Consensus 242 ~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 312 (672)
+.+++.+|.+|... +++++|+.+++++++. + .+.++..+|.+|.. .+++++|+.+|+++++.
T Consensus 141 a~~~~~lg~~y~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~----~~~~~~A~~~~~~al~~ 211 (378)
T 3q15_A 141 AEFHFKVAEAYYHM-----KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDD----FKHYDKALPHLEAALEL 211 (378)
T ss_dssp HHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-----CCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Confidence 67889999999988 4999999999999862 2 25688999999999 99999999999999864
Q ss_pred ----C----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-----C--CCHHHHHHHHHHHHcCCCchhcHHHHHH
Q 005877 313 ----Q----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAAD-----N--EEAGGHYNLGVMYYKGIGVKRDVKLACK 377 (672)
Q Consensus 313 ----~----~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~-----~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 377 (672)
+ ...++.+||.+|.. .|++++|+.+|+++++ . ..+.+++++|.+|.. .+++++|+.
T Consensus 212 ~~~~~~~~~~~~~~~~lg~~y~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~ 282 (378)
T 3q15_A 212 AMDIQNDRFIAISLLNIANSYDR-----SGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK----AGQTQKAFQ 282 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH----CCCHHHHHH
Confidence 2 34578899999986 6799999999999987 3 247889999999999 999999999
Q ss_pred HHHHHHHcC----C---HHHHHHHHHHHHcCCCccCC---HHHHHHHHHHHHHcC-ChhHHHHHHHHHHhcCCHHHHHHH
Q 005877 378 YFLVAANAG----H---QKAFYQLAKMFHTGVGLKKN---LHMATALYKLVAERG-PWSSLSRWALESYLKGDVGKAFLL 446 (672)
Q Consensus 378 ~~~~A~~~~----~---~~a~~~L~~~y~~g~g~~~~---~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~g~~~~A~~~ 446 (672)
+|+++++.. + ......++.+|.. .++ +.+|+.++++.-... ....+..+|..+...|++++|+.+
T Consensus 283 ~~~~al~~~~~~~~~~~~~~~~~l~~ly~~----~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~ 358 (378)
T 3q15_A 283 FIEEGLDHITARSHKFYKELFLFLQAVYKE----TVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAF 358 (378)
T ss_dssp HHHHHHHHCCTTCCSCHHHHHHHHHHHHSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999998742 2 3455677777765 566 889999988732111 134677899999999999999999
Q ss_pred HHHHHHc
Q 005877 447 YSRMAEL 453 (672)
Q Consensus 447 ~~~a~~~ 453 (672)
|+++++.
T Consensus 359 ~~~al~~ 365 (378)
T 3q15_A 359 YRKVLKA 365 (378)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999765
No 64
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.65 E-value=6.7e-15 Score=144.03 Aligned_cols=204 Identities=19% Similarity=0.128 Sum_probs=107.1
Q ss_pred hHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCC
Q 005877 124 PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSP 201 (672)
Q Consensus 124 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~ 201 (672)
+.+++.+|..+.. .+++++|+.+|++++. +.++.++..+|.++...|++++|+.+|+++++.
T Consensus 23 ~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------------ 86 (243)
T 2q7f_A 23 SMTGGQQMGRGSE----FGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL------------ 86 (243)
T ss_dssp -----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------------
Confidence 4555666666665 6666777777776665 456666666777776667777776666666542
Q ss_pred cccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCH
Q 005877 202 VIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEP 279 (672)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~ 279 (672)
.+.++.++..+|.++... +++++|+++|+++++. .++
T Consensus 87 ------------------------------------~~~~~~~~~~la~~~~~~-----~~~~~A~~~~~~~~~~~~~~~ 125 (243)
T 2q7f_A 87 ------------------------------------DSSAATAYYGAGNVYVVK-----EMYKEAKDMFEKALRAGMENG 125 (243)
T ss_dssp ------------------------------------CTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHTCCSH
T ss_pred ------------------------------------CCcchHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHhCCCCH
Confidence 123455556666666555 3666666666665542 355
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHH
Q 005877 280 QSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGH 355 (672)
Q Consensus 280 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~ 355 (672)
.++..+|.+|.. .+++++|+.+++++++. +++.++..+|.++.. .|++++|+.+|+++++. +++.++
T Consensus 126 ~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~ 196 (243)
T 2q7f_A 126 DLFYMLGTVLVK----LEQPKLALPYLQRAVELNENDTEARFQFGMCLAN-----EGMLDEALSQFAAVTEQDPGHADAF 196 (243)
T ss_dssp HHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----HTCCHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCcccHHHH
Confidence 566666666665 56666666666666543 345555566665553 34556666666665543 345556
Q ss_pred HHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 005877 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKM 397 (672)
Q Consensus 356 ~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~ 397 (672)
+.+|.+|.. .+++++|+.+|+++++. .++.++..++.+
T Consensus 197 ~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 197 YNAGVTYAY----KENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHHHH----TTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHHHHHH----ccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 666666655 55666666666665543 344444444433
No 65
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=5.4e-15 Score=144.67 Aligned_cols=196 Identities=17% Similarity=0.167 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHH
Q 005877 316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAF 391 (672)
Q Consensus 316 ~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~ 391 (672)
.+++.+|.++.. .+++++|+.+|+++++. +++.+++.+|.++.. .+++++|+.+|+++++. .+..++
T Consensus 24 ~~~~~~a~~~~~-----~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 94 (243)
T 2q7f_A 24 MTGGQQMGRGSE-----FGDYEKAAEAFTKAIEENKEDAIPYINFANLLSS----VNELERALAFYDKALELDSSAATAY 94 (243)
T ss_dssp -----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHH-----hhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCcchHHH
Confidence 344455555543 44555555555555543 245555555555555 55555555555555442 244555
Q ss_pred HHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005877 392 YQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKY 469 (672)
Q Consensus 392 ~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~ 469 (672)
..+|.++.. .+++++|+.+|+++++..+ +.++..+|.++...|++++|+.+++++++.
T Consensus 95 ~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---------------- 154 (243)
T 2q7f_A 95 YGAGNVYVV----KEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL---------------- 154 (243)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----------------
Confidence 555555554 4555555555555554442 334444444455555555555444444332
Q ss_pred CCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHH
Q 005877 470 GEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLG 547 (672)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg 547 (672)
.+.++.+++.+|.++. ..+++++|+.+++++++. .++.+++.+|
T Consensus 155 ------------------------------~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 200 (243)
T 2q7f_A 155 ------------------------------NENDTEARFQFGMCLA----NEGMLDEALSQFAAVTEQDPGHADAFYNAG 200 (243)
T ss_dssp ------------------------------CTTCHHHHHHHHHHHH----HHTCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ------------------------------CCccHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 2345667777888887 778888888888887663 5677888888
Q ss_pred HHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877 548 YMHEHGQGLPLDLHLAKRYYDQALEVDPAAK 578 (672)
Q Consensus 548 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 578 (672)
.+|.. .+++++|+.+|+++++.+|+..
T Consensus 201 ~~~~~----~~~~~~A~~~~~~~~~~~p~~~ 227 (243)
T 2q7f_A 201 VTYAY----KENREKALEMLDKAIDIQPDHM 227 (243)
T ss_dssp HHHHH----TTCTTHHHHHHHHHHHHCTTCH
T ss_pred HHHHH----ccCHHHHHHHHHHHHccCcchH
Confidence 88876 7788888888888888877753
No 66
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.64 E-value=5.4e-14 Score=138.64 Aligned_cols=192 Identities=19% Similarity=0.156 Sum_probs=123.1
Q ss_pred hHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCC
Q 005877 124 PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSP 201 (672)
Q Consensus 124 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~ 201 (672)
+.+++.+|.+|.. .+++++|+.+|++++. ++++.++..+|.+|...|++++|+.+|+++++.
T Consensus 37 ~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------------ 100 (252)
T 2ho1_A 37 RDAYIQLGLGYLQ----RGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS------------ 100 (252)
T ss_dssp HHHHHHHHHHHHH----TTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------
Confidence 5566677777776 6777777777777665 466777777777777777777777777776552
Q ss_pred cccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH----cC
Q 005877 202 VIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD----KG 277 (672)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~----~~ 277 (672)
.+.++.++..+|.+|... +++++|+++|+++++ +.
T Consensus 101 ------------------------------------~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~~~~~~~~~ 139 (252)
T 2ho1_A 101 ------------------------------------DSRNARVLNNYGGFLYEQ-----KRYEEAYQRLLEASQDTLYPE 139 (252)
T ss_dssp ------------------------------------CTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHTTCTTCTT
T ss_pred ------------------------------------CcCcHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHhCccCcc
Confidence 223455666666666655 366666666666655 23
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHH
Q 005877 278 EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAG 353 (672)
Q Consensus 278 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~ 353 (672)
++.++..+|.+|.. .+++++|+.+|+++++. .++.++..+|.+|.. .+++++|+.+|+++++. .++.
T Consensus 140 ~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~ 210 (252)
T 2ho1_A 140 RSRVFENLGLVSLQ----MKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK-----EREYVPARQYYDLFAQGGGQNAR 210 (252)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHTTSCCCHH
T ss_pred cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCcCcHH
Confidence 45566666666666 66666666666666653 255666666666654 44666666666666554 3555
Q ss_pred HHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc
Q 005877 354 GHYNLGVMYYKGIGVKRDVKLACKYFLVAANA 385 (672)
Q Consensus 354 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 385 (672)
++..++.++.. .+++++|..+++++.+.
T Consensus 211 ~~~~~~~~~~~----~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 211 SLLLGIRLAKV----FEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----ccCHHHHHHHHHHHHHH
Confidence 66666666666 56666666666666553
No 67
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.63 E-value=1e-13 Score=133.61 Aligned_cols=144 Identities=13% Similarity=0.055 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCc-CCHHHHHHHHHHHHH--c--CCHHHHHHHHHHHHcCCCCCcC
Q 005877 262 DRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVE-RNYTKALEWLTHAAR--Q--QLYSAYNGIGYLYVKGYGVEKK 334 (672)
Q Consensus 262 ~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~-~~~~~A~~~~~~a~~--~--~~~~a~~~Lg~~y~~g~g~~~~ 334 (672)
++++|+++|+++++ +.++.++..+|.+|.. . +++++|+.+|+++++ . .++.++..+|.++.. .|
T Consensus 57 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~ 127 (225)
T 2vq2_A 57 VNDKAQESFRQALSIKPDSAEINNNYGWFLCG----RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK-----QG 127 (225)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH-----TT
T ss_pred ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH-----cC
Confidence 44444444444433 2234444444444444 4 444444444444444 1 123444444444443 33
Q ss_pred CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--c-CCHHHHHHHHHHHHcCCCccCCHH
Q 005877 335 NYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--A-GHQKAFYQLAKMFHTGVGLKKNLH 409 (672)
Q Consensus 335 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~-~~~~a~~~L~~~y~~g~g~~~~~~ 409 (672)
++++|+.+|+++++. +++.+++.+|.++.. .+++++|+.+|+++++ + .++.++..++.++.. .++.+
T Consensus 128 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 199 (225)
T 2vq2_A 128 QFGLAEAYLKRSLAAQPQFPPAFKELARTKML----AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKA----LGNAQ 199 (225)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHH
T ss_pred CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----cCcHH
Confidence 444455544444433 234445555555544 4555555555555443 2 334444444444443 45555
Q ss_pred HHHHHHHHHHHcC
Q 005877 410 MATALYKLVAERG 422 (672)
Q Consensus 410 ~A~~~~~~a~~~~ 422 (672)
+|..+++.+.+..
T Consensus 200 ~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 200 AAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 5555555544443
No 68
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.63 E-value=8e-14 Score=134.28 Aligned_cols=197 Identities=12% Similarity=0.038 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHH
Q 005877 315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKA 390 (672)
Q Consensus 315 ~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a 390 (672)
+.++..+|.++.. .|++++|+.+|+++++. +++.+++.+|.+|.. .+++++|+.+|+++++. .+..+
T Consensus 8 ~~~~~~~~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~ 78 (225)
T 2vq2_A 8 SNIKTQLAMEYMR-----GQDYRQATASIEDALKSDPKNELAWLVRAEIYQY----LKVNDKAQESFRQALSIKPDSAEI 78 (225)
T ss_dssp HHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCChHH
Confidence 4445555555553 44555555555555443 244555555555555 55555555555555442 24445
Q ss_pred HHHHHHHHHcCCCcc-CCHHHHHHHHHHHHH--cCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005877 391 FYQLAKMFHTGVGLK-KNLHMATALYKLVAE--RGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWI 465 (672)
Q Consensus 391 ~~~L~~~y~~g~g~~-~~~~~A~~~~~~a~~--~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~ 465 (672)
+..+|.++.. . +++++|+.+|+++++ ..+ +.++..+|.++...|++++|+.+++++++.
T Consensus 79 ~~~l~~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------ 142 (225)
T 2vq2_A 79 NNNYGWFLCG----RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA------------ 142 (225)
T ss_dssp HHHHHHHHHT----TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHH----hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------
Confidence 5555555544 4 555555555555554 111 233444444444445554444444444332
Q ss_pred HHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--c-CCHHH
Q 005877 466 LDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--Q-SNAQA 542 (672)
Q Consensus 466 l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~-~~~~a 542 (672)
.+.++.+++.+|.++. ..+++++|+.+++++++ + .++.+
T Consensus 143 ----------------------------------~~~~~~~~~~la~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~ 184 (225)
T 2vq2_A 143 ----------------------------------QPQFPPAFKELARTKM----LAGQLGDADYYFKKYQSRVEVLQADD 184 (225)
T ss_dssp ----------------------------------STTCHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHCSCCHHH
T ss_pred ----------------------------------CCCCchHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCCHHH
Confidence 2445677788888888 78889999999988866 4 67778
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877 543 MFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK 578 (672)
Q Consensus 543 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 578 (672)
+..++.++.. .++.+.|..+++.+.+.+|+..
T Consensus 185 ~~~~~~~~~~----~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 185 LLLGWKIAKA----LGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHh----cCcHHHHHHHHHHHHHhCCCCH
Confidence 7777777766 6888899999888888887754
No 69
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.62 E-value=1.7e-13 Score=133.25 Aligned_cols=203 Identities=13% Similarity=0.032 Sum_probs=143.7
Q ss_pred CCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--C-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhcc
Q 005877 121 EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--G-GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLIS 197 (672)
Q Consensus 121 ~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~-~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~ 197 (672)
+.++.+++.+|.+|.. .+++++|+.+|+++++ + .+..+++.+|.++...|++++|+.+|+++++.
T Consensus 4 ~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------- 71 (228)
T 4i17_A 4 TTDPNQLKNEGNDALN----AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-------- 71 (228)
T ss_dssp CCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred ccCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------
Confidence 4566777777777777 7777778877777766 3 56677777777777777777777777776552
Q ss_pred CCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-
Q 005877 198 KDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK- 276 (672)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~- 276 (672)
++.++.+++.+|.+|... +++++|+.+|+++++.
T Consensus 72 ----------------------------------------~p~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~al~~~ 106 (228)
T 4i17_A 72 ----------------------------------------NYNLANAYIGKSAAYRDM-----KNNQEYIATLTEGIKAV 106 (228)
T ss_dssp ----------------------------------------TCSHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHS
T ss_pred ----------------------------------------CcchHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHHHC
Confidence 345678899999999888 4999999999999874
Q ss_pred -CCH-------HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Q 005877 277 -GEP-------QSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFE 344 (672)
Q Consensus 277 -~~~-------~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~ 344 (672)
+++ .++..+|.++.. .+++++|+.+|+++++.+ ++.++..+|.+|.. .+..+++
T Consensus 107 p~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~----------~~~~~~~ 172 (228)
T 4i17_A 107 PGNATIEKLYAIYYLKEGQKFQQ----AGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN----------NGADVLR 172 (228)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH----------HHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhHHHHH----hccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH----------HHHHHHH
Confidence 566 568888888888 888888888888888754 34678888888863 2344556
Q ss_pred HHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 005877 345 KAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMF 398 (672)
Q Consensus 345 ~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y 398 (672)
++............+..... .+++++|+.+|+++++. +++.+...++.+.
T Consensus 173 ~a~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 173 KATPLASSNKEKYASEKAKA----DAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHGGGTTTCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHhcccCCHHHHHHHHHHH----HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 66555432233333434444 56777888888887663 4566666666553
No 70
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.61 E-value=1e-13 Score=134.79 Aligned_cols=127 Identities=19% Similarity=0.139 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--CH
Q 005877 314 LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN---EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQ 388 (672)
Q Consensus 314 ~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~ 388 (672)
++.+++.+|.++.. .+++++|+.+|+++++. .++.+++++|.++.. .+++++|+.+|+++++.. ++
T Consensus 6 ~~~~~~~~g~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~ 76 (228)
T 4i17_A 6 DPNQLKNEGNDALN-----AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADN----IKKYKEAADYFDIAIKKNYNLA 76 (228)
T ss_dssp CHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCSHH
T ss_pred CHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH----hhcHHHHHHHHHHHHHhCcchH
Confidence 34445555555543 34555555555555442 234455555555555 555555555555555432 34
Q ss_pred HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh---------hHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 389 KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW---------SSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 389 ~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~---------~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
.+++.+|.+|.. .+++++|+.+|+++++..|. .++..+|..+...|++++|+.+|+++++.
T Consensus 77 ~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 77 NAYIGKSAAYRD----MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 455555555554 55555555555555554432 22455555555555666666555555544
No 71
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.61 E-value=1.3e-14 Score=164.45 Aligned_cols=165 Identities=17% Similarity=0.090 Sum_probs=127.2
Q ss_pred HhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhc
Q 005877 119 AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLI 196 (672)
Q Consensus 119 ~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~ 196 (672)
..|++++++++||.+|.. .+++++|+.+|++|++ ++++.++++||.+|...|++++|+.+|+++++.
T Consensus 4 s~P~~a~al~nLG~~~~~----~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l------- 72 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKRE----QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI------- 72 (723)
T ss_dssp --CHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred CCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence 346678888888888888 8888888888888876 688888888888888888888888888888763
Q ss_pred cCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH-
Q 005877 197 SKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD- 275 (672)
Q Consensus 197 ~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~- 275 (672)
+++++.++++||.+|... +++++|++.|+++++
T Consensus 73 -----------------------------------------~P~~~~a~~nLg~~l~~~-----g~~~~A~~~~~kAl~l 106 (723)
T 4gyw_A 73 -----------------------------------------SPTFADAYSNMGNTLKEM-----QDVQGALQCYTRAIQI 106 (723)
T ss_dssp -----------------------------------------CTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHH
T ss_pred -----------------------------------------CCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh
Confidence 345677777788777777 377888888887766
Q ss_pred -cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC
Q 005877 276 -KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN 349 (672)
Q Consensus 276 -~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~ 349 (672)
++++.++++||.+|.. .+++++|+.+|+++++. +++.++.+||.+|.. .+++++|++.|+++++.
T Consensus 107 ~P~~~~a~~~Lg~~~~~----~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~-----~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 107 NPAFADAHSNLASIHKD----SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQI-----VCDWTDYDERMKKLVSI 174 (723)
T ss_dssp CTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-----TTCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHh-----cccHHHHHHHHHHHHHh
Confidence 3677777888888777 77788888888877764 477777778777775 45777777777777653
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.60 E-value=1.5e-14 Score=147.03 Aligned_cols=238 Identities=15% Similarity=0.131 Sum_probs=174.4
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHH
Q 005877 158 GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQA 237 (672)
Q Consensus 158 ~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa 237 (672)
.++.++..+|.++...|++++|+.+|+++++........ .
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~----------------------------------------~ 64 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGH----------------------------------------D 64 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCS----------------------------------------S
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCC----------------------------------------C
Confidence 445788889999999999999999999987753221000 0
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHH
Q 005877 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----------GEPQSMEFLGEIYARGAGVERNYTKALEWLT 307 (672)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 307 (672)
.+..+.++..+|.+|... +++++|+.+|+++++. ..+.++..+|.+|.. .+++++|+.+|+
T Consensus 65 ~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 135 (311)
T 3nf1_A 65 HPDVATMLNILALVYRDQ-----NKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK----RGKYKEAEPLCK 135 (311)
T ss_dssp SHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH----cCcHHHHHHHHH
Confidence 112467888999999887 4999999999999864 235788999999999 999999999999
Q ss_pred HHHHc----------CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--------C--CHHHHHHHHHHHHcCCC
Q 005877 308 HAARQ----------QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--------E--EAGGHYNLGVMYYKGIG 367 (672)
Q Consensus 308 ~a~~~----------~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--------~--~~~a~~~Lg~~y~~g~g 367 (672)
++++. ....++..+|.+|.. .+++++|+.+|+++++. . .+.++..+|.+|..
T Consensus 136 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~--- 207 (311)
T 3nf1_A 136 RALEIREKVLGKDHPDVAKQLNNLALLCQN-----QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK--- 207 (311)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHT-----TTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---
Confidence 99864 135578899999985 67999999999999875 2 35678899999999
Q ss_pred chhcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHcCC--CccCCHHHHHHHHHHHHHcCC--hhHHHHHHH
Q 005877 368 VKRDVKLACKYFLVAANAG-----------HQKAFYQLAKMFHTGV--GLKKNLHMATALYKLVAERGP--WSSLSRWAL 432 (672)
Q Consensus 368 ~~~~~~~A~~~~~~A~~~~-----------~~~a~~~L~~~y~~g~--g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~ 432 (672)
.+++++|+.+|+++++.. ....+..++.++..+. ...+.+.+|+.+++++....+ +.++..+|.
T Consensus 208 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~ 286 (311)
T 3nf1_A 208 -QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGA 286 (311)
T ss_dssp -HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Confidence 999999999999998631 1122333333333221 235667778888888887664 457889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 005877 433 ESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 433 ~~~~~g~~~~A~~~~~~a~~~ 453 (672)
++...|++++|+.+|+++++.
T Consensus 287 ~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 287 LYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999775
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.60 E-value=1.9e-14 Score=162.91 Aligned_cols=161 Identities=16% Similarity=0.132 Sum_probs=122.6
Q ss_pred cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CC
Q 005877 276 KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EE 351 (672)
Q Consensus 276 ~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~ 351 (672)
++++.++++||.+|.. .|++++|+.+|+++++. +++.++++||.+|.. .|++++|+.+|++|++. ++
T Consensus 6 P~~a~al~nLG~~~~~----~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~-----~g~~~eA~~~~~~Al~l~P~~ 76 (723)
T 4gyw_A 6 PTHADSLNNLANIKRE----QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ-----QGKLQEALMHYKEAIRISPTF 76 (723)
T ss_dssp CHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTC
T ss_pred CCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCC
Confidence 3466777888888877 78888888888887764 477778888888775 56788888888887765 46
Q ss_pred HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHH
Q 005877 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL 427 (672)
Q Consensus 352 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~ 427 (672)
+.++++||.+|.. .+++++|++.|++|++. ++..++++||.+|.. .+++++|+.+|+++++..| +.++
T Consensus 77 ~~a~~nLg~~l~~----~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~----~g~~~eAi~~~~~Al~l~P~~~~a~ 148 (723)
T 4gyw_A 77 ADAYSNMGNTLKE----MQDVQGALQCYTRAIQINPAFADAHSNLASIHKD----SGNIPEAIASYRTALKLKPDFPDAY 148 (723)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHH
Confidence 7788888888877 77888888888887663 467788888888777 7788888888888877763 5677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 428 SRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 428 ~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
.++|.++...|++++|+..|+++++.
T Consensus 149 ~~L~~~l~~~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 149 CNLAHCLQIVCDWTDYDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred hhhhhHHHhcccHHHHHHHHHHHHHh
Confidence 77888888888888888888777654
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.59 E-value=1.4e-14 Score=147.22 Aligned_cols=228 Identities=15% Similarity=0.138 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC-------C---CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc
Q 005877 316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-------E---EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA 385 (672)
Q Consensus 316 ~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 385 (672)
.++..+|.+|.. .|++++|+.+|+++++. + .+.++..+|.+|.. .+++++|+.+|+++++.
T Consensus 28 ~~~~~l~~~~~~-----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 28 RTLHNLVIQYAS-----QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD----QNKYKDAANLLNDALAI 98 (311)
T ss_dssp HHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Confidence 344555555543 34555555555555542 1 23455566666666 56666666666666542
Q ss_pred ------C----CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC-------C---hhHHHHHHHHHHhcCCHHHHHH
Q 005877 386 ------G----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG-------P---WSSLSRWALESYLKGDVGKAFL 445 (672)
Q Consensus 386 ------~----~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~-------~---~~a~~~lg~~~~~~g~~~~A~~ 445 (672)
+ ...++.++|.+|.. .+++++|+.+|+++++.. + ..++..+|.++...|++++|+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 174 (311)
T 3nf1_A 99 REKTLGKDHPAVAATLNNLAVLYGK----RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEY 174 (311)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHH----cCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 1 23556666777665 667777777777766541 1 2356777888888888888888
Q ss_pred HHHHHHHc--------C--CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC-----------CH
Q 005877 446 LYSRMAEL--------G--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG-----------NE 504 (672)
Q Consensus 446 ~~~~a~~~--------g--~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----------~~ 504 (672)
+|+++++. . ...++.++|.++.. .+++++|+.+++++.+.. ..
T Consensus 175 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 175 YYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK----------------QGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH----------------HTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 88888665 1 34567889999888 788999999999876521 12
Q ss_pred HHHHHHHHHHHhCC--CCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877 505 HAALLIGDAYYYGR--GTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA 576 (672)
Q Consensus 505 ~a~~~lG~~y~~g~--g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 576 (672)
..+..++.++..+. ...+++.+|..+++++... ..+.++++||.+|.. .|++++|+++|++|+++.|.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRR----QGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHhhc
Confidence 22333333333211 1456677788888888763 567889999999988 89999999999999998664
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.57 E-value=6.3e-13 Score=139.51 Aligned_cols=255 Identities=13% Similarity=0.027 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC---CH----HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC---
Q 005877 280 QSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ---LY----SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--- 349 (672)
Q Consensus 280 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~----~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--- 349 (672)
.+...+|.++.. .+++++|+.+++++++.. +. .++..+|.++.. .|++++|+.+++++++.
T Consensus 15 ~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~ 85 (373)
T 1hz4_A 15 EFNALRAQVAIN----DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC-----KGELTRSLALMQQTEQMARQ 85 (373)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHh-----cCcHHHHHHHHHHHHHHHHh
Confidence 445667777777 788888888888887642 22 256778888875 56888888888888763
Q ss_pred -CCH----HHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHcCCCccCCHHHHHHH
Q 005877 350 -EEA----GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG----------HQKAFYQLAKMFHTGVGLKKNLHMATAL 414 (672)
Q Consensus 350 -~~~----~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~----------~~~a~~~L~~~y~~g~g~~~~~~~A~~~ 414 (672)
+++ .+..++|.++.. .|++++|+.+|+++++.. ...++.++|.++.. .+++++|..+
T Consensus 86 ~~~~~~~~~~~~~la~~~~~----~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~ 157 (373)
T 1hz4_A 86 HDVWHYALWSLIQQSEILFA----QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA----WARLDEAEAS 157 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHH----hcCHHHHHHH
Confidence 333 446788888888 889999999999887621 23566788888887 8999999999
Q ss_pred HHHHHHcCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCH-HHHH----HHHHHHHHhCCCCcccCC
Q 005877 415 YKLVAERGP-------WSSLSRWALESYLKGDVGKAFLLYSRMAEL----GYE-VAQS----NAAWILDKYGEGSMCMGE 478 (672)
Q Consensus 415 ~~~a~~~~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~----g~~-~a~~----nla~~l~~~~~~~~~~~~ 478 (672)
++++++..+ ..++..+|.++...|++++|..+++++.+. +.. .... ..+.++..
T Consensus 158 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 227 (373)
T 1hz4_A 158 ARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM---------- 227 (373)
T ss_dssp HHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH----------
Confidence 999987653 235778899999999999999999999654 221 1111 12333444
Q ss_pred CCCCCchHhHHHHHHHHHHHHhCCC------HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc----C----CHHHHH
Q 005877 479 SGFCTDAERHQCAHSLWWQASEQGN------EHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ----S----NAQAMF 544 (672)
Q Consensus 479 ~~~~~~~~~~~~A~~~~~~a~~~~~------~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~----~----~~~a~~ 544 (672)
.+++++|..+++++..... ..++..+|.++. ..+++++|..+++++++. + ...++.
T Consensus 228 ------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 297 (373)
T 1hz4_A 228 ------TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI----LLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 297 (373)
T ss_dssp ------TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 6789999999998766542 335678999999 889999999999998653 2 135788
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHhcCC
Q 005877 545 NLGYMHEHGQGLPLDLHLAKRYYDQALEVDP 575 (672)
Q Consensus 545 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 575 (672)
.+|.++.. .|+.++|..++++|+++.+
T Consensus 298 ~la~~~~~----~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 298 LLNQLYWQ----AGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHH----HTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----hCCHHHHHHHHHHHHHHhc
Confidence 89999877 8899999999999998754
No 76
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.56 E-value=6.2e-14 Score=142.17 Aligned_cols=204 Identities=16% Similarity=0.105 Sum_probs=123.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCch
Q 005877 298 NYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVK 369 (672)
Q Consensus 298 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~ 369 (672)
++++|+.+|+++ |.+|.. .|++++|+.+|+++++. ++ +.++.++|.+|.. .
T Consensus 32 ~~~~A~~~~~~a------------~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~----~ 90 (292)
T 1qqe_A 32 KFEEAADLCVQA------------ATIYRL-----RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS----G 90 (292)
T ss_dssp HHHHHHHHHHHH------------HHHHHH-----TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----T
T ss_pred cHHHHHHHHHHH------------HHHHHH-----cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH----C
Confidence 366666666665 556654 55666666666666553 22 3455666666666 6
Q ss_pred hcHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCcc-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCH
Q 005877 370 RDVKLACKYFLVAANA----GH----QKAFYQLAKMFHTGVGLK-KNLHMATALYKLVAERGPWSSLSRWALESYLKGDV 440 (672)
Q Consensus 370 ~~~~~A~~~~~~A~~~----~~----~~a~~~L~~~y~~g~g~~-~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~ 440 (672)
+++++|+.+|++|++. ++ ..++.++|.+|.. . +++++|+.+|+++++..+.
T Consensus 91 g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~----~lg~~~~A~~~~~~Al~~~~~---------------- 150 (292)
T 1qqe_A 91 GNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN----DLHDYAKAIDCYELAGEWYAQ---------------- 150 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHHHH----------------
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----hhcCHHHHHHHHHHHHHHHHh----------------
Confidence 6666666666666542 21 2344455555543 3 4555555555555443210
Q ss_pred HHHHHHHHHHHHcCC----HHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC--C-------HHHH
Q 005877 441 GKAFLLYSRMAELGY----EVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--N-------EHAA 507 (672)
Q Consensus 441 ~~A~~~~~~a~~~g~----~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~-------~~a~ 507 (672)
.+. ..++.++|.++.. .+++++|+.+|+++++.. + ..++
T Consensus 151 ------------~~~~~~~~~~~~~lg~~~~~----------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 151 ------------DQSVALSNKCFIKCADLKAL----------------DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp ------------TTCHHHHHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred ------------CCChHHHHHHHHHHHHHHHH----------------hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 011 2234445555544 445555555555544321 1 2367
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCH-----HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877 508 LLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNA-----QAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA 576 (672)
Q Consensus 508 ~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~-----~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 576 (672)
+++|.+|. ..+++++|+.+|+++++. +.+ ..+..|+..+..+ -.+++++|+..|++++.++|.
T Consensus 203 ~~lg~~~~----~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~--~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 203 LKKGLCQL----AATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEG--DSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp HHHHHHHH----HTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTT--CTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHH----HcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcC--CHHHHHHHHHHhccCCccHHH
Confidence 89999999 889999999999999874 222 2456677777643 378899999999999998875
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.56 E-value=3.1e-12 Score=134.22 Aligned_cols=261 Identities=9% Similarity=-0.040 Sum_probs=197.2
Q ss_pred HHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC---CCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhcc
Q 005877 125 HARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG---GNI----QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLIS 197 (672)
Q Consensus 125 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~---~~~----~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~ 197 (672)
.+...+|.++.. .+++++|+.++++++.. +++ .++..+|.++...|++++|+.+++++++..+...
T Consensus 15 ~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--- 87 (373)
T 1hz4_A 15 EFNALRAQVAIN----DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD--- 87 (373)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC---
Confidence 456677888777 88999999999998763 332 3677889999999999999999999887543210
Q ss_pred CCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-
Q 005877 198 KDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK- 276 (672)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~- 276 (672)
+. .....++..+|.++... +++++|+.+|+++++.
T Consensus 88 ---------------------------~~------------~~~~~~~~~la~~~~~~-----G~~~~A~~~~~~al~~~ 123 (373)
T 1hz4_A 88 ---------------------------VW------------HYALWSLIQQSEILFAQ-----GFLQTAWETQEKAFQLI 123 (373)
T ss_dssp ---------------------------CH------------HHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHH
T ss_pred ---------------------------cH------------HHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHH
Confidence 00 01235577888888877 4999999999998763
Q ss_pred ---C------CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHcCCCCCcCCHHHHH
Q 005877 277 ---G------EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-------LYSAYNGIGYLYVKGYGVEKKNYTKAK 340 (672)
Q Consensus 277 ---~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-------~~~a~~~Lg~~y~~g~g~~~~~~~~A~ 340 (672)
+ ...++..+|.+|.. .+++++|..+++++++.. ...++..+|.++.. .|++++|.
T Consensus 124 ~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~ 194 (373)
T 1hz4_A 124 NEQHLEQLPMHEFLVRIRAQLLWA----WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA-----RGDLDNAR 194 (373)
T ss_dssp HHTTCTTSTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH-----HTCHHHHH
T ss_pred HHhccccCcHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH-----cCCHHHHH
Confidence 1 24567789999988 899999999999998642 24578889999885 67999999
Q ss_pred HHHHHHHhC----CCH-HHHH----HHHHHHHcCCCchhcHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCCcc
Q 005877 341 EYFEKAADN----EEA-GGHY----NLGVMYYKGIGVKRDVKLACKYFLVAANAGH------QKAFYQLAKMFHTGVGLK 405 (672)
Q Consensus 341 ~~~~~a~~~----~~~-~a~~----~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~------~~a~~~L~~~y~~g~g~~ 405 (672)
.+++++.+. +.+ .... .++.++.. .|++++|..+++++.+... ...+..++.++.. .
T Consensus 195 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~----~ 266 (373)
T 1hz4_A 195 SQLNRLENLLGNGKYHSDWISNANKVRVIYWQM----TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL----L 266 (373)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH----CCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHH----c
Confidence 999998754 222 1111 23445667 7899999999999876432 3356788888887 8
Q ss_pred CCHHHHHHHHHHHHHcCC--------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 406 KNLHMATALYKLVAERGP--------WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 406 ~~~~~A~~~~~~a~~~~~--------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
+++++|+..++++++..+ ..++..+|.++...|++++|..+++++++.
T Consensus 267 g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 267 GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999999876531 236777899999999999999999999765
No 78
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.55 E-value=2.4e-13 Score=137.89 Aligned_cols=164 Identities=16% Similarity=0.068 Sum_probs=134.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCCc
Q 005877 262 DRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ----QL----YSAYNGIGYLYVKGYGVEK 333 (672)
Q Consensus 262 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~ 333 (672)
++++|+.+|+++ |.+|.. .+++++|+.+|+++++. ++ +.++.++|.+|.. .
T Consensus 32 ~~~~A~~~~~~a------------~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~-----~ 90 (292)
T 1qqe_A 32 KFEEAADLCVQA------------ATIYRL----RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS-----G 90 (292)
T ss_dssp HHHHHHHHHHHH------------HHHHHH----TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----T
T ss_pred cHHHHHHHHHHH------------HHHHHH----cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-----C
Confidence 588898888887 556777 88999999999998864 33 4678899999986 6
Q ss_pred CCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCch-hcHHHHHHHHHHHHHcC----C----HHHHHHHHH
Q 005877 334 KNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVK-RDVKLACKYFLVAANAG----H----QKAFYQLAK 396 (672)
Q Consensus 334 ~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~-~~~~~A~~~~~~A~~~~----~----~~a~~~L~~ 396 (672)
|++++|+.+|++|++. ++ +.++.++|.+|.. . +++++|+.+|++|++.. + ..++.++|.
T Consensus 91 g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~----~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~ 166 (292)
T 1qqe_A 91 GNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN----DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCAD 166 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----hhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 7999999999999865 33 4688899999998 7 89999999999998742 2 457889999
Q ss_pred HHHcCCCccCCHHHHHHHHHHHHHcCCh--h-------HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877 397 MFHTGVGLKKNLHMATALYKLVAERGPW--S-------SLSRWALESYLKGDVGKAFLLYSRMAELG 454 (672)
Q Consensus 397 ~y~~g~g~~~~~~~A~~~~~~a~~~~~~--~-------a~~~lg~~~~~~g~~~~A~~~~~~a~~~g 454 (672)
++.. .+++++|+.+|+++++..+. . ++.++|.++...|++++|+.+|+++++..
T Consensus 167 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 229 (292)
T 1qqe_A 167 LKAL----DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (292)
T ss_dssp HHHH----TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred HHHH----hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9998 89999999999999987631 1 46788999999999999999999987654
No 79
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.54 E-value=5.8e-14 Score=146.39 Aligned_cols=283 Identities=13% Similarity=0.029 Sum_probs=137.3
Q ss_pred hhhHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 005877 105 VRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYA 184 (672)
Q Consensus 105 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~~~~~~~A~~~y~ 184 (672)
.+++++|..++++. +++.++..||..+.. .+++++|+..|.++ +++..+..++..+...|++++|+.+++
T Consensus 16 ~~~ld~A~~fae~~---~~~~vWs~La~A~l~----~g~~~eAIdsfika---~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 16 IGNLDRAYEFAERC---NEPAVWSQLAKAQLQ----KGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhC---CChHHHHHHHHHHHH----cCCHHHHHHHHHcC---CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 57789999999988 446799999999998 88999999999875 577788999999999999999999998
Q ss_pred HHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHH
Q 005877 185 ELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRT 264 (672)
Q Consensus 185 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~ 264 (672)
.+.+..+. + .+...+...|.+.|+.+++.++++. .+..++..+|..++.. +.++
T Consensus 86 ~ark~~~~--------~---------~i~~~Li~~Y~Klg~l~e~e~f~~~----pn~~a~~~IGd~~~~~-----g~ye 139 (449)
T 1b89_A 86 MARKKARE--------S---------YVETELIFALAKTNRLAELEEFING----PNNAHIQQVGDRCYDE-----KMYD 139 (449)
T ss_dssp ----------------------------------------CHHHHTTTTTC----C---------------------CTT
T ss_pred HHHHhCcc--------c---------hhHHHHHHHHHHhCCHHHHHHHHcC----CcHHHHHHHHHHHHHc-----CCHH
Confidence 87763211 0 1122466778889999998888753 4556999999999887 5999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Q 005877 265 KALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFE 344 (672)
Q Consensus 265 ~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~ 344 (672)
+|..+|.++ ..+..||.++.. .+++++|++.|+++ +++.++..++..+.. .++++.|..+..
T Consensus 140 eA~~~Y~~a------~n~~~LA~~L~~----Lg~yq~AVea~~KA---~~~~~Wk~v~~aCv~-----~~ef~lA~~~~l 201 (449)
T 1b89_A 140 AAKLLYNNV------SNFGRLASTLVH----LGEYQAAVDGARKA---NSTRTWKEVCFACVD-----GKEFRLAQMCGL 201 (449)
T ss_dssp THHHHHHHT------TCHHHHHHHHHT----TTCHHHHHHHHHHH---TCHHHHHHHHHHHHH-----TTCHHHHHHTTT
T ss_pred HHHHHHHHh------hhHHHHHHHHHH----hccHHHHHHHHHHc---CCchhHHHHHHHHHH-----cCcHHHHHHHHH
Confidence 999999977 467899999999 99999999999998 588888888888875 569999977666
Q ss_pred HHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC
Q 005877 345 KAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG 422 (672)
Q Consensus 345 ~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~ 422 (672)
..+ .+|+-...+..+|.+ .|.+++|+.++++++.. .+...+..||.+|.+= .+++..+.++.|...+...
T Consensus 202 ~L~--~~ad~l~~lv~~Yek----~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky--~p~k~~ehl~~~~~~ini~ 273 (449)
T 1b89_A 202 HIV--VHADELEELINYYQD----RGYFEELITMLEAALGLERAHMGMFTELAILYSKF--KPQKMREHLELFWSRVNIP 273 (449)
T ss_dssp TTT--TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT--CHHHHHHHHHHHSTTSCHH
T ss_pred HHH--hCHhhHHHHHHHHHH----CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHhcCc
Confidence 422 467767778889998 89999999999999765 4788999999998752 3555566666665444333
Q ss_pred C-------hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005877 423 P-------WSSLSRWALESYLKGDVGKAFLLYSR 449 (672)
Q Consensus 423 ~-------~~a~~~lg~~~~~~g~~~~A~~~~~~ 449 (672)
+ +..+..+...|...++++.|+...-+
T Consensus 274 k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~ 307 (449)
T 1b89_A 274 KVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 307 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHh
Confidence 2 44577788889999999999876543
No 80
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.52 E-value=1.2e-12 Score=133.74 Aligned_cols=215 Identities=7% Similarity=-0.009 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCC---Cchhc-------HHHHHHHHHHHHH-c--CCHHHHHHHHHHHHcC
Q 005877 337 TKAKEYFEKAADN--EEAGGHYNLGVMYYKGI---GVKRD-------VKLACKYFLVAAN-A--GHQKAFYQLAKMFHTG 401 (672)
Q Consensus 337 ~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~---g~~~~-------~~~A~~~~~~A~~-~--~~~~a~~~L~~~y~~g 401 (672)
++|+..|+++++. +++++++++|.++.... ...++ .++|+..|++|++ . ++..++..+|.++..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~- 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES- 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh-
Confidence 5666777777654 56777777776664200 00133 3777777777776 2 356677777777776
Q ss_pred CCccCCHHHHHHHHHHHHHcCC--hh-HHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCccc
Q 005877 402 VGLKKNLHMATALYKLVAERGP--WS-SLSRWALESYLKGDVGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCM 476 (672)
Q Consensus 402 ~g~~~~~~~A~~~~~~a~~~~~--~~-a~~~lg~~~~~~g~~~~A~~~~~~a~~~g--~~~a~~nla~~l~~~~~~~~~~ 476 (672)
.+++++|...|+++++..| +. ++..+|..+...|++++|+..|+++++.. ....+...+.+...
T Consensus 112 ---~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~-------- 180 (308)
T 2ond_A 112 ---RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY-------- 180 (308)
T ss_dssp ---TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH--------
T ss_pred ---cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--------
Confidence 6777788888888777664 33 66777777777778888888888877654 23333323332111
Q ss_pred CCCCCCCchHhHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHH
Q 005877 477 GESGFCTDAERHQCAHSLWWQAS--EQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ------SNAQAMFNLGY 548 (672)
Q Consensus 477 ~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~~a~~~Lg~ 548 (672)
..+++++|+..|++++ .++++.++..+|.++. ..+++++|+..|+++++. .+...+..++.
T Consensus 181 -------~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~----~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~ 249 (308)
T 2ond_A 181 -------CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS----HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 249 (308)
T ss_dssp -------TSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHH
T ss_pred -------HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH----HCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 0346778888888764 4677899999999998 889999999999999984 24567788888
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877 549 MHEHGQGLPLDLHLAKRYYDQALEVDPAAK 578 (672)
Q Consensus 549 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 578 (672)
++.. .|+.+.|...++++++..|+..
T Consensus 250 ~~~~----~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 250 FESN----IGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHH----HSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHH----cCCHHHHHHHHHHHHHHccccc
Confidence 8766 7899999999999999998754
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.52 E-value=1.9e-13 Score=136.54 Aligned_cols=145 Identities=19% Similarity=0.160 Sum_probs=101.7
Q ss_pred cCCHHHHHHHHHHHHHc-------C---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC------C----CHHHH
Q 005877 296 ERNYTKALEWLTHAARQ-------Q---LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN------E----EAGGH 355 (672)
Q Consensus 296 ~~~~~~A~~~~~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~------~----~~~a~ 355 (672)
.+++++|+.+|+++++. + .+.++..+|.+|.. .+++++|+.+|+++++. + .+.++
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD-----QNKYKEAAHLLNDALAIREKTLGKDHPAVAATL 88 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-----cccHHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Confidence 45555555555555541 1 34556677777764 45777777777777643 1 34567
Q ss_pred HHHHHHHHcCCCchhcHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHc----
Q 005877 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANA----------GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER---- 421 (672)
Q Consensus 356 ~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----------~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~---- 421 (672)
.++|.+|.. .+++++|+.+|+++++. ....++.++|.+|.. .+++++|+.+|+++++.
T Consensus 89 ~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~ 160 (283)
T 3edt_B 89 NNLAVLYGK----RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN----QGKAEEVEYYYRRALEIYATR 160 (283)
T ss_dssp HHHHHHHHT----TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHh
Confidence 777888777 77888888888877653 134677788888877 78888888888888776
Q ss_pred ----CC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 422 ----GP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 422 ----~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
.+ ..++..+|.++...|++++|+.+++++++.
T Consensus 161 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 161 LGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 22 346778888888999999999999988764
No 82
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.51 E-value=4e-13 Score=128.80 Aligned_cols=182 Identities=14% Similarity=0.156 Sum_probs=111.3
Q ss_pred CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHH
Q 005877 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLS 428 (672)
Q Consensus 351 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~ 428 (672)
.++..+..|..+.. .+++++|+.+|+++++.. ++.++++++. ...... .+....
T Consensus 3 ~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~--------~~~~~~------------~~~~~~ 58 (208)
T 3urz_A 3 SVDEMLQKVSAAIE----AGQNGQAVSYFRQTIALNIDRTEMYYWTNV--------DKNSEI------------SSKLAT 58 (208)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCHHHHHHHHHHHS--------CTTSHH------------HHHHHH
T ss_pred CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCChHHHHHhhh--------cchhhh------------hHHHHH
Confidence 34556666666666 667777777777776644 3344444210 000000 011223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHH--HhCCCH
Q 005877 429 RWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQA--SEQGNE 504 (672)
Q Consensus 429 ~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a--~~~~~~ 504 (672)
.+|.++...|++++|+..|+++++. +++.++.++|.++.. .+++++|+.+|+++ .+++++
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----------------~g~~~~A~~~~~~al~~~P~~~ 122 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVC----------------RGQEKDALRMYEKILQLEADNL 122 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----------------HTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHcCCCCH
Confidence 3666666666666666666666443 356666666666665 55666666666654 346678
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877 505 HAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSN-AQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK 578 (672)
Q Consensus 505 ~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~~-~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 578 (672)
++++++|.+|+.- ...+...+...|+++..... ..+.+++|..+.. .+++++|+.+|++|++++|+..
T Consensus 123 ~a~~~lg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 123 AANIFLGNYYYLT--AEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLF----TTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHH----HHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHHHHHHHHHHH--hHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCHH
Confidence 8888888888621 12345667778888776533 3467888888876 7899999999999999999754
No 83
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.51 E-value=1.8e-12 Score=128.88 Aligned_cols=188 Identities=16% Similarity=0.166 Sum_probs=139.2
Q ss_pred hCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CC---HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC
Q 005877 348 DNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GH---QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG 422 (672)
Q Consensus 348 ~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~---~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~ 422 (672)
...++.+++.+|..+.. .+++++|+..|+++++. ++ +.+++.+|.+|.. .+++++|+..|+++++..
T Consensus 11 ~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~~l~~~ 82 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYN----QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQ----NKEYLLAASEYERFIQIY 82 (261)
T ss_dssp CCSSHHHHHHHHHHHHH----TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHHC
Confidence 34567788888888887 78888888888888764 34 6788888888887 788888888888888775
Q ss_pred C-----hhHHHHHHHHHHh--------cCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHh
Q 005877 423 P-----WSSLSRWALESYL--------KGDVGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAER 487 (672)
Q Consensus 423 ~-----~~a~~~lg~~~~~--------~g~~~~A~~~~~~a~~~g--~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~ 487 (672)
| +.+++.+|.+++. .|++++|+..|+++++.. ++.+...+..+...
T Consensus 83 p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~------------------- 143 (261)
T 3qky_A 83 QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIREL------------------- 143 (261)
T ss_dssp TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH-------------------
T ss_pred CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHH-------------------
Confidence 3 3467788888888 888888888888887653 22222222221111
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--C---CHHHHHHHHHHHHc-CCC-----C
Q 005877 488 HQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--S---NAQAMFNLGYMHEH-GQG-----L 556 (672)
Q Consensus 488 ~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~---~~~a~~~Lg~~y~~-g~g-----~ 556 (672)
.......++.+|.+|+ ..+++++|+.+|+++++. + .+.+++.+|.+|.. |.. .
T Consensus 144 ------------~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~ 207 (261)
T 3qky_A 144 ------------RAKLARKQYEAARLYE----RRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQ 207 (261)
T ss_dssp ------------HHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGH
T ss_pred ------------HHHHHHHHHHHHHHHH----HccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcc
Confidence 1112344789999999 899999999999999874 3 46899999999975 110 0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCc
Q 005877 557 PLDLHLAKRYYDQALEVDPAAK 578 (672)
Q Consensus 557 ~~d~~~A~~~~~~A~~~~~~~~ 578 (672)
.+++++|+.+|+++++..|++.
T Consensus 208 ~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 208 PERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCT
T ss_pred cchHHHHHHHHHHHHHHCCCCh
Confidence 2899999999999999999875
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.51 E-value=2.6e-13 Score=135.44 Aligned_cols=215 Identities=13% Similarity=0.097 Sum_probs=161.0
Q ss_pred hccCChHHHHHHHHHHHH----------cCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc----------CCHH
Q 005877 221 KSRGEDDEAFQILEYQAQ----------KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----------GEPQ 280 (672)
Q Consensus 221 ~~~g~~~~Ai~~~~~aa~----------~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----------~~~~ 280 (672)
...|++++|+.+++++.+ +..+.++..+|.+|... +++++|+.+|+++++. ..+.
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ-----NKYKEAAHLLNDALAIREKTLGKDHPAVAA 86 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHHHHHHHcCCcchHHHH
Confidence 356677777777777654 23578899999999988 4999999999999864 2367
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC-
Q 005877 281 SMEFLGEIYARGAGVERNYTKALEWLTHAARQ----------QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN- 349 (672)
Q Consensus 281 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~- 349 (672)
++..+|.+|.. .+++++|+.+|+++++. ....++..+|.+|.. .|++++|+.+|+++++.
T Consensus 87 ~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~ 157 (283)
T 3edt_B 87 TLNNLAVLYGK----RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN-----QGKAEEVEYYYRRALEIY 157 (283)
T ss_dssp HHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT-----TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHH
Confidence 89999999999 99999999999999865 245678999999986 67999999999999876
Q ss_pred -------C--CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHcCC--CccCC
Q 005877 350 -------E--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG-----------HQKAFYQLAKMFHTGV--GLKKN 407 (672)
Q Consensus 350 -------~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----------~~~a~~~L~~~y~~g~--g~~~~ 407 (672)
. ...++.++|.+|.. .+++++|+.+|+++++.. ....+..++..+..+. .....
T Consensus 158 ~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (283)
T 3edt_B 158 ATRLGPDDPNVAKTKNNLASCYLK----QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP 233 (283)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH
Confidence 2 35688999999999 999999999999998641 2345556666655422 12334
Q ss_pred HHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 408 LHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 408 ~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
+.++..+++...... .+.++..+|.++...|++++|+.+|+++++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 234 YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp ---------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555555443322 2346889999999999999999999999864
No 85
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.49 E-value=5.3e-14 Score=146.66 Aligned_cols=279 Identities=11% Similarity=0.064 Sum_probs=145.5
Q ss_pred hhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCC
Q 005877 215 NKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-GEPQSMEFLGEIYARGA 293 (672)
Q Consensus 215 ~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~ 293 (672)
.++..+...|++++|++.|.++ .++..+..++..+... +++++|+.+++.+.+. .++.....|+.+|.+
T Consensus 37 ~La~A~l~~g~~~eAIdsfika---~D~~~y~~V~~~ae~~-----g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~K-- 106 (449)
T 1b89_A 37 QLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTS-----GNWEELVKYLQMARKKARESYVETELIFALAK-- 106 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHcC---CCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHhCccchhHHHHHHHHHH--
Confidence 3455555555555555555432 4555666666666554 4888888888877764 345667778888888
Q ss_pred CCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHH
Q 005877 294 GVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVK 373 (672)
Q Consensus 294 g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~ 373 (672)
.+++.++.++++. ++..++..+|..+.. .|.+++|+.+|.++ ..+..||.++.+ .++++
T Consensus 107 --lg~l~e~e~f~~~----pn~~a~~~IGd~~~~-----~g~yeeA~~~Y~~a------~n~~~LA~~L~~----Lg~yq 165 (449)
T 1b89_A 107 --TNRLAELEEFING----PNNAHIQQVGDRCYD-----EKMYDAAKLLYNNV------SNFGRLASTLVH----LGEYQ 165 (449)
T ss_dssp ----CHHHHTTTTTC----C---------------------CTTTHHHHHHHT------TCHHHHHHHHHT----TTCHH
T ss_pred --hCCHHHHHHHHcC----CcHHHHHHHHHHHHH-----cCCHHHHHHHHHHh------hhHHHHHHHHHH----hccHH
Confidence 7888888877753 455688888888875 56889999999876 467788999988 88999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 374 LACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 374 ~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
+|++.|++| +++..+..+...+.. .++++.|..+....+ .+++-...+...|...|.+++|+.++++++..
T Consensus 166 ~AVea~~KA---~~~~~Wk~v~~aCv~----~~ef~lA~~~~l~L~--~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 166 AAVDGARKA---NSTRTWKEVCFACVD----GKEFRLAQMCGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp HHHHHHHHH---TCHHHHHHHHHHHHH----TTCHHHHHHTTTTTT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHc---CCchhHHHHHHHHHH----cCcHHHHHHHHHHHH--hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 999999988 578888887777776 789999977666422 34555556777888999999999999999655
Q ss_pred C--CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh--C-----CCHHHHHHHHHHHHhCCCCCCCH
Q 005877 454 G--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE--Q-----GNEHAALLIGDAYYYGRGTQRDY 524 (672)
Q Consensus 454 g--~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~-----~~~~a~~~lG~~y~~g~g~~~d~ 524 (672)
+ +......+|.+|.++. +++..+.++.|...+. + .++..|..+..+|. .-+++
T Consensus 237 e~ah~~~ftel~il~~ky~--------------p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~----~~~e~ 298 (449)
T 1b89_A 237 ERAHMGMFTELAILYSKFK--------------PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD----KYEEY 298 (449)
T ss_dssp TTCCHHHHHHHHHHHHTTC--------------HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHH----HTTCH
T ss_pred cHHHHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH----hhchH
Confidence 4 6777788999988753 7788888888874322 2 34556778888888 78999
Q ss_pred HHHHHHHHHHH--------------hcCCHHHHHHHHHHHH
Q 005877 525 ERAAEAYMHAR--------------SQSNAQAMFNLGYMHE 551 (672)
Q Consensus 525 ~~A~~~~~~A~--------------~~~~~~a~~~Lg~~y~ 551 (672)
+.|+..+.... +..+.+.+|..-..|.
T Consensus 299 d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 299 DNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL 339 (449)
T ss_dssp HHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred HHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Confidence 99998766642 3466676666665554
No 86
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.48 E-value=8.7e-12 Score=127.29 Aligned_cols=211 Identities=9% Similarity=-0.045 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHh--CCCHHHHHHHHHHHhcc-------CCH-------HHHHHHHHHHHHHHHhhhhccCCCCcccchhc
Q 005877 145 GKAFLYHHFAAE--GGNIQSKMAVAYTYLRQ-------DMH-------DKAVKLYAELAEIAVNSFLISKDSPVIEPIRI 208 (672)
Q Consensus 145 ~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~-------~~~-------~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l 208 (672)
++|+..|++++. +.++.+++.+|..+... |++ ++|+..|+++++.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~------------------- 93 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST------------------- 93 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-------------------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-------------------
Confidence 678888888876 68888888888877542 443 4444444444320
Q ss_pred ccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHH-HHHHH
Q 005877 209 HNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQ-SMEFL 285 (672)
Q Consensus 209 ~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~-a~~~L 285 (672)
..++++.++..+|.++... +++++|+..|+++++. .++. ++..+
T Consensus 94 ----------------------------~~p~~~~~~~~~~~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~~~ 140 (308)
T 2ond_A 94 ----------------------------LLKKNMLLYFAYADYEESR-----MKYEKVHSIYNRLLAIEDIDPTLVYIQY 140 (308)
T ss_dssp ----------------------------TTTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHTSSSSCTHHHHHHH
T ss_pred ----------------------------hCcccHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhccccCccHHHHHH
Confidence 1235677888888888776 3888888888888874 3454 77778
Q ss_pred HHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHH
Q 005877 286 GEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVM 361 (672)
Q Consensus 286 g~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~ 361 (672)
|.++.. .+++++|+..|+++++.+ ....+...+.+... ..|++++|+..|+++++. +++.++..+|.+
T Consensus 141 ~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 212 (308)
T 2ond_A 141 MKFARR----AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY----CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDY 212 (308)
T ss_dssp HHHHHH----HHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH----TSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHH----hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 887777 777888888888887643 33444444444321 124677777777777653 466666666666
Q ss_pred HHcCCCchhcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC
Q 005877 362 YYKGIGVKRDVKLACKYFLVAANA------GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP 423 (672)
Q Consensus 362 y~~g~g~~~~~~~A~~~~~~A~~~------~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 423 (672)
+.. .|++++|+..|+++++. .....+..++.++.. .|+.++|..+++++++..|
T Consensus 213 ~~~----~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~----~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 213 LSH----LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN----IGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHT----TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH----HSCHHHHHHHHHHHHHHTT
T ss_pred HHH----CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHcc
Confidence 666 66677777777776663 133455555555554 5566666666666665544
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.45 E-value=1.3e-12 Score=129.90 Aligned_cols=174 Identities=14% Similarity=0.162 Sum_probs=120.8
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CC---HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH
Q 005877 237 AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GE---PQSMEFLGEIYARGAGVERNYTKALEWLTHAAR 311 (672)
Q Consensus 237 a~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 311 (672)
.++.++..++.+|..++.. +++++|+..|+++++. ++ +.+++.+|.+|.. .+++++|+.+|+++++
T Consensus 10 ~~~~~~~~~~~~a~~~~~~-----g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~~l~ 80 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQ-----GKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQ----NKEYLLAASEYERFIQ 80 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHT-----TCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH----hCcHHHHHHHHHHHHH
Confidence 3456889999999999888 4999999999999874 45 7899999999998 8999999999999987
Q ss_pred c-----CCHHHHHHHHHHHHcC---CCCCcCCHHHHHHHHHHHHhCC--CHHHH-----------------HHHHHHHHc
Q 005877 312 Q-----QLYSAYNGIGYLYVKG---YGVEKKNYTKAKEYFEKAADNE--EAGGH-----------------YNLGVMYYK 364 (672)
Q Consensus 312 ~-----~~~~a~~~Lg~~y~~g---~g~~~~~~~~A~~~~~~a~~~~--~~~a~-----------------~~Lg~~y~~ 364 (672)
. ..+.+++.+|.++... .....+++++|+.+|+++++.. ++.+. +.+|.+|..
T Consensus 81 ~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~ 160 (261)
T 3qky_A 81 IYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYER 160 (261)
T ss_dssp HCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 2367889999998730 0011468999999999998752 33333 566666666
Q ss_pred CCCchhcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcC-CC-----ccCCHHHHHHHHHHHHHcCC
Q 005877 365 GIGVKRDVKLACKYFLVAANAG-----HQKAFYQLAKMFHTG-VG-----LKKNLHMATALYKLVAERGP 423 (672)
Q Consensus 365 g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~L~~~y~~g-~g-----~~~~~~~A~~~~~~a~~~~~ 423 (672)
.+++++|+..|+++++.. .+.+++++|.+|..- .. ..+++++|+..|+++++..|
T Consensus 161 ----~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 161 ----RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp ----TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred ----ccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 666666666666665532 235666666665530 00 01556666666666665554
No 88
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.44 E-value=1.4e-12 Score=124.92 Aligned_cols=161 Identities=16% Similarity=0.148 Sum_probs=86.1
Q ss_pred CchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH--hCCChHHHHH----------------HHHHhhcCCcccCCHHHH
Q 005877 86 NGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSV----------------LGFLYGMGMMRERNKGKA 147 (672)
Q Consensus 86 ~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~----------------Lg~~y~~G~g~~~d~~~A 147 (672)
+.++..|..++. .+++++|+..|+++. +|+++.+++. +|.+|.. .+++++|
T Consensus 5 ~~~~~~g~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A 73 (208)
T 3urz_A 5 DEMLQKVSAAIE-------AGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK----NRNYDKA 73 (208)
T ss_dssp HHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHH----TTCHHHH
T ss_pred HHHHHHHHHHHH-------CCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHH----CCCHHHH
Confidence 344555655553 466777777777743 3455666666 5555555 5555555
Q ss_pred HHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCC
Q 005877 148 FLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGE 225 (672)
Q Consensus 148 ~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~ 225 (672)
+.+|+++++ ++++.+++.+|.+|...|++++|+.+|+++++
T Consensus 74 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------------------------- 116 (208)
T 3urz_A 74 YLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ------------------------------------- 116 (208)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------------------------------------
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------------------------
Confidence 555555543 45555555555555555555555555555544
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHcCCCCcCCHHHHHH
Q 005877 226 DDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE-PQSMEFLGEIYARGAGVERNYTKALE 304 (672)
Q Consensus 226 ~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~-~~a~~~Lg~~y~~g~g~~~~~~~A~~ 304 (672)
.+++++.+++.+|.+|+..+ ..+...+...|++++.... ..+++.+|..+.. .+++++|+.
T Consensus 117 -----------~~P~~~~a~~~lg~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~----~~~~~~A~~ 178 (208)
T 3urz_A 117 -----------LEADNLAANIFLGNYYYLTA---EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLF----TTRYEKARN 178 (208)
T ss_dssp -----------HCTTCHHHHHHHHHHHHHHH---HHHHHHHHHHHC---CCCHHHHHHHHHHHHHHH----HHTHHHHHH
T ss_pred -----------cCCCCHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH----ccCHHHHHH
Confidence 23445666666666654331 1234445555555544321 2245555666555 566666666
Q ss_pred HHHHHHHc
Q 005877 305 WLTHAARQ 312 (672)
Q Consensus 305 ~~~~a~~~ 312 (672)
+|+++++.
T Consensus 179 ~~~~al~l 186 (208)
T 3urz_A 179 SLQKVILR 186 (208)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHHh
Confidence 66666654
No 89
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.44 E-value=4.1e-12 Score=117.91 Aligned_cols=165 Identities=15% Similarity=0.066 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHH
Q 005877 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLS 428 (672)
Q Consensus 353 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~ 428 (672)
.+++.+|.++.. .+++++|+.+|+++++. .++.+++.+|.++.. .+++++|+.+++++++..+ +.++.
T Consensus 9 ~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 80 (186)
T 3as5_A 9 VYYRDKGISHAK----AGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVK----TGAVDRGTELLERSLADAPDNVKVAT 80 (186)
T ss_dssp HHHHHHHHHHHH----HTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 344555555555 55666666666655442 345555555555554 5555555555555555432 33444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHH
Q 005877 429 RWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAAL 508 (672)
Q Consensus 429 ~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~ 508 (672)
.+|..+...|++++|+.+++++++. .+.++.+++
T Consensus 81 ~~a~~~~~~~~~~~A~~~~~~~~~~----------------------------------------------~~~~~~~~~ 114 (186)
T 3as5_A 81 VLGLTYVQVQKYDLAVPLLIKVAEA----------------------------------------------NPINFNVRF 114 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH----------------------------------------------CTTCHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhc----------------------------------------------CcHhHHHHH
Confidence 4555555555555555555444332 245567778
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcc
Q 005877 509 LIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKL 579 (672)
Q Consensus 509 ~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~ 579 (672)
.+|.++. ..+++++|+.+++++++. .++.+++.+|.+|.. .|++++|+.+++++++.+|+...
T Consensus 115 ~~a~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 115 RLGVALD----NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ----MGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHH----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHCCCG
T ss_pred HHHHHHH----HcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCchh
Confidence 8899988 789999999999998764 678999999999987 78999999999999998776543
No 90
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.42 E-value=1.5e-12 Score=147.99 Aligned_cols=176 Identities=13% Similarity=0.030 Sum_probs=132.6
Q ss_pred HhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHH--------h--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 005877 119 AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAA--------E--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAE 188 (672)
Q Consensus 119 ~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~--------~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~ 188 (672)
.+++++.+.+..| .. .+++++|+..|++++ . +++..+++.+|.+|...|++++|+..|+++++
T Consensus 389 ~~p~~~~a~~~~a---~~----~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 461 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TV----LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE 461 (681)
T ss_dssp CCTTSTTHHHHHH---TT----TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCCcchHHhhc---cc----ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 3456677777666 22 678888888888887 3 56778888888888888888888888888765
Q ss_pred HHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHH
Q 005877 189 IAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALM 268 (672)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~ 268 (672)
.+++++.+++.+|.+|... +++++|+.
T Consensus 462 ------------------------------------------------~~p~~~~a~~~lg~~~~~~-----g~~~~A~~ 488 (681)
T 2pzi_A 462 ------------------------------------------------RVGWRWRLVWYRAVAELLT-----GDYDSATK 488 (681)
T ss_dssp ------------------------------------------------HHCCCHHHHHHHHHHHHHH-----TCHHHHHH
T ss_pred ------------------------------------------------cCcchHHHHHHHHHHHHHc-----CCHHHHHH
Confidence 3456778888888888877 48888888
Q ss_pred HHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Q 005877 269 WFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFE 344 (672)
Q Consensus 269 ~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~ 344 (672)
.|+++++ ++++.+++++|.+|.. .+++++ +.+|+++++. +++.+++++|.+|.. .|++++|+.+|+
T Consensus 489 ~~~~al~l~P~~~~~~~~lg~~~~~----~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~-----~g~~~~A~~~~~ 558 (681)
T 2pzi_A 489 HFTEVLDTFPGELAPKLALAATAEL----AGNTDE-HKFYQTVWSTNDGVISAAFGLARARSA-----EGDRVGAVRTLD 558 (681)
T ss_dssp HHHHHHHHSTTCSHHHHHHHHHHHH----HTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHH----cCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHH-----cCCHHHHHHHHH
Confidence 8888876 4677888888888887 788888 8888888764 477788888888875 568888888888
Q ss_pred HHHhCC--CHHHHHHHHHHHHc
Q 005877 345 KAADNE--EAGGHYNLGVMYYK 364 (672)
Q Consensus 345 ~a~~~~--~~~a~~~Lg~~y~~ 364 (672)
++++.+ ++.+++++|.++..
T Consensus 559 ~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 559 EVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp TSCTTSTTHHHHHHHHHHHTC-
T ss_pred hhcccCcccHHHHHHHHHHHHc
Confidence 887653 57777888887765
No 91
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.40 E-value=1.5e-11 Score=125.59 Aligned_cols=191 Identities=13% Similarity=0.076 Sum_probs=154.6
Q ss_pred ccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005877 172 RQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLF 251 (672)
Q Consensus 172 ~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~ 251 (672)
..|++++|..+++++.+..+.. ++...+++++|+..|+++ |.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~-------------------------~~~~~~~~~~A~~~~~~a------------~~~ 45 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS-------------------------FMKWKPDYDSAASEYAKA------------AVA 45 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC-------------------------SSSCSCCHHHHHHHHHHH------------HHH
T ss_pred ccchHHHHHHHHHHHHHHcccc-------------------------ccCCCCCHHHHHHHHHHH------------HHH
Confidence 4578899999999987754210 111147899999999886 456
Q ss_pred HHhcCCCcccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC----H
Q 005877 252 YYFGLRGLRRDRTKALMWFSKAADK----GE----PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ----QL----Y 315 (672)
Q Consensus 252 y~~~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~ 315 (672)
|... +++++|+.+|+++++. ++ ..++..+|.+|.. .+++++|+.+|+++++. ++ .
T Consensus 46 ~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~Al~l~~~~g~~~~~a 116 (307)
T 2ifu_A 46 FKNA-----KQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKD----LQRMPEAVQYIEKASVMYVENGTPDTAA 116 (307)
T ss_dssp HHHT-----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHc-----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 6666 4999999999999874 33 5688999999998 89999999999999864 33 4
Q ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--
Q 005877 316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-- 385 (672)
Q Consensus 316 ~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-- 385 (672)
.++.++|.+|.. +++++|+.+|++|++. ++ +.++.++|.+|.. .+++++|+.+|+++++.
T Consensus 117 ~~~~~lg~~~~~------g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~ 186 (307)
T 2ifu_A 117 MALDRAGKLMEP------LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR----QQKFDEAAASLQKEKSMYK 186 (307)
T ss_dssp HHHHHHHHHHTT------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHH
Confidence 578899999963 6999999999999875 22 5788999999999 99999999999999873
Q ss_pred --CC----HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC
Q 005877 386 --GH----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP 423 (672)
Q Consensus 386 --~~----~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 423 (672)
+. ..++..+|.++.. .+++++|+.+|++++ ..|
T Consensus 187 ~~~~~~~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 187 EMENYPTCYKKCIAQVLVQLH----RADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHT-TST
T ss_pred HcCChhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHh-CCC
Confidence 22 3477888888887 799999999999999 654
No 92
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.39 E-value=1.7e-12 Score=147.40 Aligned_cols=176 Identities=13% Similarity=0.015 Sum_probs=149.1
Q ss_pred CCCCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH--------h--CCChHHHHHHHHHhhcCCcccCCHHHHHH
Q 005877 80 IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--------M--EGDPHARSVLGFLYGMGMMRERNKGKAFL 149 (672)
Q Consensus 80 ~~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~--------~--~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 149 (672)
.+++++.+.+..+. ..+++++|+..|+++. . ++++.+++.+|.+|.. .+++++|+.
T Consensus 389 ~~p~~~~a~~~~a~----------~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~----~g~~~~A~~ 454 (681)
T 2pzi_A 389 VDPTDVAASVLQAT----------VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLD----LGDVAKATR 454 (681)
T ss_dssp CCTTSTTHHHHHHT----------TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHH----HTCHHHHHH
T ss_pred CCCCCcchHHhhcc----------cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHh----cCCHHHHHH
Confidence 56777777776661 2688999999999987 3 5789999999999999 999999999
Q ss_pred HHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChH
Q 005877 150 YHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDD 227 (672)
Q Consensus 150 ~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~ 227 (672)
.|+++++ +++..+++.+|.+|...|++++|+..|+++++.
T Consensus 455 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-------------------------------------- 496 (681)
T 2pzi_A 455 KLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT-------------------------------------- 496 (681)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------------------------------
T ss_pred HHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------------------
Confidence 9999986 799999999999999999999999999999874
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHH
Q 005877 228 EAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEW 305 (672)
Q Consensus 228 ~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 305 (672)
+++++.+++++|.+|... +++++ +++|+++++ ++++.+++++|.+|.. .+++++|+.+
T Consensus 497 ----------~P~~~~~~~~lg~~~~~~-----g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~ 556 (681)
T 2pzi_A 497 ----------FPGELAPKLALAATAELA-----GNTDE-HKFYQTVWSTNDGVISAAFGLARARSA----EGDRVGAVRT 556 (681)
T ss_dssp ----------STTCSHHHHHHHHHHHHH-----TCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred ----------CCCChHHHHHHHHHHHHc-----CChHH-HHHHHHHHHhCCchHHHHHHHHHHHHH----cCCHHHHHHH
Confidence 456778888888888887 48888 888888876 4688889999999988 8899999999
Q ss_pred HHHHHHc--CCHHHHHHHHHHHHc
Q 005877 306 LTHAARQ--QLYSAYNGIGYLYVK 327 (672)
Q Consensus 306 ~~~a~~~--~~~~a~~~Lg~~y~~ 327 (672)
|+++++. ++..++.++|.++..
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHhhcccCcccHHHHHHHHHHHHc
Confidence 9988765 467788888888865
No 93
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.38 E-value=2.5e-11 Score=112.59 Aligned_cols=158 Identities=17% Similarity=0.174 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHH
Q 005877 279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGG 354 (672)
Q Consensus 279 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a 354 (672)
...++.+|.++.. .+++++|+.+|+++++. .++.++..+|.++.. .+++++|+.+++++++. .++.+
T Consensus 8 ~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~ 78 (186)
T 3as5_A 8 QVYYRDKGISHAK----AGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVK-----TGAVDRGTELLERSLADAPDNVKV 78 (186)
T ss_dssp HHHHHHHHHHHHH----HTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCCCCHHH
Confidence 4566778888887 88888998888888764 477888888888875 56889999999888765 47888
Q ss_pred HHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHH
Q 005877 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRW 430 (672)
Q Consensus 355 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l 430 (672)
+..+|.++.. .+++++|+.+|+++.+. .++.++..+|.++.. .+++++|+.+++++++..+ +.++..+
T Consensus 79 ~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l 150 (186)
T 3as5_A 79 ATVLGLTYVQ----VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN----LGRFDEAIDSFKIALGLRPNEGKVHRAI 150 (186)
T ss_dssp HHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHH----hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH----cCcHHHHHHHHHHHHhcCccchHHHHHH
Confidence 8889998888 88999999999988774 467888888988887 8899999999999888764 5678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 005877 431 ALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 431 g~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
|.++...|++++|+.+++++++.
T Consensus 151 a~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 151 AFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999999988654
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.37 E-value=3.8e-11 Score=116.44 Aligned_cols=194 Identities=10% Similarity=0.019 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--C
Q 005877 315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--E---AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--H 387 (672)
Q Consensus 315 ~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~ 387 (672)
+.+++.+|..+.. .|++++|+..|+++++.. + +.+++.+|.+|.. .+++++|+..|+++++.. +
T Consensus 4 ~~~~~~~a~~~~~-----~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~~l~~~P~~ 74 (225)
T 2yhc_A 4 PNEIYATAQQKLQ-----DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK----NADLPLAQAAIDRFIRLNPTH 74 (225)
T ss_dssp HHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHCcCC
Confidence 4455566666654 556666666666665531 1 3456666666666 566666666666665532 2
Q ss_pred H---HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CHHHH---
Q 005877 388 Q---KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELG--YEVAQ--- 459 (672)
Q Consensus 388 ~---~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g--~~~a~--- 459 (672)
+ .+++++|.++.. .+.. ....+..++..+...|++++|+..|+++++.. .+.+.
T Consensus 75 ~~~~~a~~~~g~~~~~----~~~~--------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~ 136 (225)
T 2yhc_A 75 PNIDYVMYMRGLTNMA----LDDS--------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDAT 136 (225)
T ss_dssp TTHHHHHHHHHHHHHH----HHC----------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHH
T ss_pred CcHHHHHHHHHHHHHh----hhhh--------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence 1 355566655543 1100 00112223333444667778888887776653 22221
Q ss_pred HHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--
Q 005877 460 SNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ-- 537 (672)
Q Consensus 460 ~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~-- 537 (672)
..++.+... .....+.+|.+|+ ..+++.+|+..|+++++.
T Consensus 137 ~~l~~~~~~----------------------------------~~~~~~~~a~~~~----~~~~~~~A~~~~~~~l~~~p 178 (225)
T 2yhc_A 137 KRLVFLKDR----------------------------------LAKYEYSVAEYYT----ERGAWVAVVNRVEGMLRDYP 178 (225)
T ss_dssp HHHHHHHHH----------------------------------HHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHH----------------------------------HHHHHHHHHHHHH----HcCcHHHHHHHHHHHHHHCc
Confidence 111111100 1223468899999 899999999999999874
Q ss_pred CCH---HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877 538 SNA---QAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA 577 (672)
Q Consensus 538 ~~~---~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 577 (672)
+++ .+++.+|.+|.. .|++++|+++++++....|+.
T Consensus 179 ~~~~~~~a~~~l~~~~~~----~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 179 DTQATRDALPLMENAYRQ----MQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp TSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHCCSCC
T ss_pred CCCccHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhhCCCc
Confidence 454 789999999998 899999999999999888775
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.37 E-value=1.7e-12 Score=117.40 Aligned_cols=96 Identities=14% Similarity=0.207 Sum_probs=42.9
Q ss_pred cCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhc
Q 005877 296 ERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRD 371 (672)
Q Consensus 296 ~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~ 371 (672)
.+++++|+..+++++... ++.+.+.||.+|.. .+++++|+.+|+++++. +++.+++++|.+|.. .++
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~-----~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~~~ 80 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYE-----AKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL----EEN 80 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTC
T ss_pred cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCc
Confidence 444444444444444321 23334444444443 33444444444444433 244444444444444 444
Q ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHHHc
Q 005877 372 VKLACKYFLVAAN--AGHQKAFYQLAKMFHT 400 (672)
Q Consensus 372 ~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~ 400 (672)
+++|+.+|+++++ ++++.+++++|.+|..
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4444444444443 2234444444444443
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.37 E-value=1.9e-12 Score=117.06 Aligned_cols=136 Identities=17% Similarity=0.166 Sum_probs=115.4
Q ss_pred HHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHH
Q 005877 320 GIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLA 395 (672)
Q Consensus 320 ~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~ 395 (672)
.||.++.. ++++++|+..+++++... ++.+++.||.+|.. .+++++|+++|+++++ ++++.+++++|
T Consensus 2 ~LG~~~~~-----~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~----~~~~~~A~~~~~~al~~~p~~~~a~~~lg 72 (150)
T 4ga2_A 2 PLGSMRRS-----KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYE----AKEYDLAKKYICTYINVQERDPKAHRFLG 72 (150)
T ss_dssp -----CCC-----HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HhHHHHHH-----cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 47888874 679999999999998764 67788999999999 9999999999999987 45899999999
Q ss_pred HHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHH-HHHHHH--cCCHHHHHHHHHHHHH
Q 005877 396 KMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLL-YSRMAE--LGYEVAQSNAAWILDK 468 (672)
Q Consensus 396 ~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~-~~~a~~--~g~~~a~~nla~~l~~ 468 (672)
.+|.. .+++++|+.+|+++++..| +.+++++|.++...|++++|... +++|++ ++++.+....+.++..
T Consensus 73 ~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 73 LLYEL----EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred HHHHH----cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 99998 9999999999999999885 67899999999999999877765 588865 5688888888888765
No 97
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.34 E-value=6e-11 Score=120.96 Aligned_cols=99 Identities=23% Similarity=0.225 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCcc
Q 005877 334 KNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH----QKAFYQLAKMFHTGVGLK 405 (672)
Q Consensus 334 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~L~~~y~~g~g~~ 405 (672)
+++++|+.+|.++ |.+|.. .+++++|+.+|.++++. ++ ..++.++|.+|.. .
T Consensus 30 ~~~~~A~~~~~~a------------~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~----~ 89 (307)
T 2ifu_A 30 PDYDSAASEYAKA------------AVAFKN----AKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKD----L 89 (307)
T ss_dssp CCHHHHHHHHHHH------------HHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----T
T ss_pred CCHHHHHHHHHHH------------HHHHHH----cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh----C
Confidence 3666666666654 345555 56666666666666542 11 3456666666665 5
Q ss_pred CCHHHHHHHHHHHHHcC----C----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 406 KNLHMATALYKLVAERG----P----WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 406 ~~~~~A~~~~~~a~~~~----~----~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
+++++|+.+|+++++.. + ..++.++|.++.. |++++|+.+|++|++.
T Consensus 90 g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~ 144 (307)
T 2ifu_A 90 QRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV 144 (307)
T ss_dssp TCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 66677777777665542 1 2346667777766 7777777777777653
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.26 E-value=2.5e-10 Score=110.59 Aligned_cols=178 Identities=11% Similarity=-0.016 Sum_probs=109.3
Q ss_pred CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CC---HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--
Q 005877 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GE---PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-- 313 (672)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-- 313 (672)
.+.+++.+|..++ ..+++++|+..|+++++. .+ +.+++.+|.+|.. .+++++|+..|+++++..
T Consensus 3 ~~~~~~~~a~~~~-----~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~~l~~~P~ 73 (225)
T 2yhc_A 3 PPNEIYATAQQKL-----QDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK----NADLPLAQAAIDRFIRLNPT 73 (225)
T ss_dssp CHHHHHHHHHHHH-----HHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHCcC
Confidence 4556666666653 246777777777777652 22 3567777777776 677777777777776542
Q ss_pred CH---HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--CH
Q 005877 314 LY---SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQ 388 (672)
Q Consensus 314 ~~---~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~ 388 (672)
++ .+++.+|.++.. .+.. ....+..++..+.. .+++++|+..|+++++.. ++
T Consensus 74 ~~~~~~a~~~~g~~~~~-----~~~~--------------~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~P~~~ 130 (225)
T 2yhc_A 74 HPNIDYVMYMRGLTNMA-----LDDS--------------ALQGFFGVDRSDRD----PQQARAAFSDFSKLVRGYPNSQ 130 (225)
T ss_dssp CTTHHHHHHHHHHHHHH-----HHC----------------------------C----CHHHHHHHHHHHHHHTTCTTCT
T ss_pred CCcHHHHHHHHHHHHHh-----hhhh--------------hhhhhhccchhhcC----cHHHHHHHHHHHHHHHHCcCCh
Confidence 22 366667766653 0000 00001111222222 345555555555554421 11
Q ss_pred -----------------HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh-----hHHHHHHHHHHhcCCHHHHHHH
Q 005877 389 -----------------KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW-----SSLSRWALESYLKGDVGKAFLL 446 (672)
Q Consensus 389 -----------------~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~-----~a~~~lg~~~~~~g~~~~A~~~ 446 (672)
...+.+|.+|.. .+++++|+..|+++++..|. .+++.+|.++...|++++|+..
T Consensus 131 ~a~~a~~~l~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~ 206 (225)
T 2yhc_A 131 YTTDATKRLVFLKDRLAKYEYSVAEYYTE----RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKV 206 (225)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHH
Confidence 122577888887 89999999999999988743 4688999999999999999999
Q ss_pred HHHHHHcC
Q 005877 447 YSRMAELG 454 (672)
Q Consensus 447 ~~~a~~~g 454 (672)
++++...+
T Consensus 207 ~~~l~~~~ 214 (225)
T 2yhc_A 207 AKIIAANS 214 (225)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhhC
Confidence 99876653
No 99
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.21 E-value=1.4e-10 Score=101.20 Aligned_cols=112 Identities=11% Similarity=-0.051 Sum_probs=83.2
Q ss_pred CCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccC
Q 005877 121 EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISK 198 (672)
Q Consensus 121 ~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~ 198 (672)
|..+.++..+|..|.. .+++++|+.+|+++++ +.++.+++.+|.+|...|++++|+..|+++++.
T Consensus 10 P~~a~~~~~~G~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------- 76 (126)
T 4gco_A 10 PELAQEEKNKGNEYFK----KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--------- 76 (126)
T ss_dssp HHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---------
Confidence 4455677778888877 7788888888888765 677888888888888888888888888877663
Q ss_pred CCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--c
Q 005877 199 DSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--K 276 (672)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~ 276 (672)
++.++.+++.+|.+|... +++++|++.|+++++ +
T Consensus 77 ---------------------------------------~p~~~~a~~~lg~~~~~~-----~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 77 ---------------------------------------DSKFIKGYIRKAACLVAM-----REWSKAQRAYEDALQVDP 112 (126)
T ss_dssp ---------------------------------------CTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCT
T ss_pred ---------------------------------------hhhhhHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHCc
Confidence 345677778888887777 478888888888766 4
Q ss_pred CCHHHHHHHHHHH
Q 005877 277 GEPQSMEFLGEIY 289 (672)
Q Consensus 277 ~~~~a~~~Lg~~y 289 (672)
+++.+...|+.++
T Consensus 113 ~~~~a~~~l~~~l 125 (126)
T 4gco_A 113 SNEEAREGVRNCL 125 (126)
T ss_dssp TCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHhc
Confidence 6777777776653
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.21 E-value=5e-11 Score=110.69 Aligned_cols=59 Identities=14% Similarity=-0.003 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 005877 125 HARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELA 187 (672)
Q Consensus 125 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~ 187 (672)
+..+.+|..+.. .+++++|+.+|++++. ++++.+++.+|.++...|++++|+..|++++
T Consensus 7 ~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 67 (176)
T 2r5s_A 7 EQLLKQVSELLQ----QGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIP 67 (176)
T ss_dssp TTHHHHHHHHHH----TTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhh
Confidence 344555555555 5566666666665443 4566666666666666666666666665543
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.21 E-value=2e-10 Score=127.83 Aligned_cols=153 Identities=15% Similarity=0.039 Sum_probs=76.2
Q ss_pred hcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHH
Q 005877 370 RDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFL 445 (672)
Q Consensus 370 ~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~ 445 (672)
+++++|+.+|+++++ +++..+++.+|.++.. .+++++|+.+|+++++..+ +.++..+|.++...|++++|+.
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELG----MGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 456666666666654 2345666666666655 5666666666666665543 3455556666666666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHH
Q 005877 446 LYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYE 525 (672)
Q Consensus 446 ~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~ 525 (672)
+|+++++. .++++.+++++|.+|. ..++++
T Consensus 79 ~~~~al~~----------------------------------------------~p~~~~~~~~la~~~~----~~g~~~ 108 (568)
T 2vsy_A 79 LLQQASDA----------------------------------------------APEHPGIALWLGHALE----DAGQAE 108 (568)
T ss_dssp HHHHHHHH----------------------------------------------CTTCHHHHHHHHHHHH----HTTCHH
T ss_pred HHHHHHhc----------------------------------------------CCCCHHHHHHHHHHHH----HcCCHH
Confidence 66655443 2334455555555555 555666
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877 526 RAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA 577 (672)
Q Consensus 526 ~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 577 (672)
+|+++|+++++ .+++.++++||.++.. .+..+++++|.++|+++++.+|..
T Consensus 109 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 109 AAAAAYTRAHQLLPEEPYITAQLLNWRRR-LCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hhccccHHHHHHHHHHHHhcCCcc
Confidence 66666666544 2455555666655554 000155666666666666555543
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.20 E-value=3.2e-09 Score=107.09 Aligned_cols=220 Identities=8% Similarity=-0.072 Sum_probs=174.8
Q ss_pred CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchh--cHHHHHHHHHHHHHc--CCHHHHHHHHHHH----HcCCCc
Q 005877 335 NYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKR--DVKLACKYFLVAANA--GHQKAFYQLAKMF----HTGVGL 404 (672)
Q Consensus 335 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~--~~~~A~~~~~~A~~~--~~~~a~~~L~~~y----~~g~g~ 404 (672)
..++|+..+.+++.. ++..+++.-|.+... .+ ++++++.++.+++.. .+..++++-+.++ ... +.
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~----l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l-~~ 122 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKN----LPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELN-NN 122 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----CTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHT-TT
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHH----cccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhc-cc
Confidence 446888999888876 478888989988887 55 899999999998874 4678888888887 431 11
Q ss_pred cCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHH--HHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcccCC
Q 005877 405 KKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVG--KAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGE 478 (672)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~--~A~~~~~~a~~~g--~~~a~~nla~~l~~~~~~~~~~~~ 478 (672)
.+++++++.++.++++..| ..++...+.+....|.++ +++.++.++++.+ +..|+++.++++...+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~------- 195 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKH------- 195 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGG-------
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc-------
Confidence 2688999999999999884 567888888888889888 9999999997764 89999999999876321
Q ss_pred CCCCCchHhHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHH
Q 005877 479 SGFCTDAERHQCAHSLWWQAS--EQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ-----SNAQAMFNLGYMHE 551 (672)
Q Consensus 479 ~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~-----~~~~a~~~Lg~~y~ 551 (672)
..+...++++++++++++ .++|..+++.++.++... ....+....+.++.++. .++.++..|+.+|.
T Consensus 196 ---~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~ 269 (306)
T 3dra_A 196 ---LATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERF---DRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYT 269 (306)
T ss_dssp ---GCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT---TCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHH
T ss_pred ---cchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhc---CCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence 112345899999999875 567899999999999842 23355566677776653 58999999999998
Q ss_pred cCCCCCCCHHHHHHHHHHHHh-cCCC
Q 005877 552 HGQGLPLDLHLAKRYYDQALE-VDPA 576 (672)
Q Consensus 552 ~g~g~~~d~~~A~~~~~~A~~-~~~~ 576 (672)
. .++.++|++.|+++.+ .+|.
T Consensus 270 ~----~~~~~~A~~~~~~l~~~~Dpi 291 (306)
T 3dra_A 270 Q----QKKYNESRTVYDLLKSKYNPI 291 (306)
T ss_dssp H----TTCHHHHHHHHHHHHHTTCGG
T ss_pred c----cCCHHHHHHHHHHHHhccChH
Confidence 6 7899999999999997 6887
No 103
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.19 E-value=3e-10 Score=99.07 Aligned_cols=107 Identities=17% Similarity=0.058 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhH
Q 005877 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSS 426 (672)
Q Consensus 351 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a 426 (672)
.+.++.++|..|.. .|++++|+.+|+++++. .++.+++++|.+|.. .+++++|+..|+++++.+| +.+
T Consensus 12 ~a~~~~~~G~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 12 LAQEEKNKGNEYFK----KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK----LMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh----hccHHHHHHHHHHHHHhhhhhhHH
Confidence 34566677777777 77888888888887663 467777788888776 7788888888888877763 556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 005877 427 LSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWI 465 (672)
Q Consensus 427 ~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~ 465 (672)
++.+|.++...|++++|+..|+++++. ++..++.+++.+
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 778888888888888888888888554 577777777655
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.19 E-value=2.8e-10 Score=105.57 Aligned_cols=161 Identities=8% Similarity=-0.076 Sum_probs=121.9
Q ss_pred CCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHH--HHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhCC-C
Q 005877 83 GAINGSYYITISKMMSAVTNGDVRVMEEATSEVES--AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGG-N 159 (672)
Q Consensus 83 ~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~--a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~~-~ 159 (672)
...+..+.+|..++. .|++++|+..|++ ..+|+++.+++.+|.+|.. .+++++|+.++++++... +
T Consensus 4 ~~~~~~~~~a~~~~~-------~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~ 72 (176)
T 2r5s_A 4 SPDEQLLKQVSELLQ-------QGEHAQALNVIQTLSDELQSRGDVKLAKADCLLE----TKQFELAQELLATIPLEYQD 72 (176)
T ss_dssp --CTTHHHHHHHHHH-------TTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHH----TTCHHHHHHHHTTCCGGGCC
T ss_pred CHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHhhhccCC
Confidence 345667888888775 5899999999999 6788999999999999998 999999999999987632 5
Q ss_pred HHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHH
Q 005877 160 IQSKMAVAYTYLR-QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ 238 (672)
Q Consensus 160 ~~a~~~Lg~~y~~-~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~ 238 (672)
+.....++.+... .++..+|+..|+++++ .+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~------------------------------------------------~~ 104 (176)
T 2r5s_A 73 NSYKSLIAKLELHQQAAESPELKRLEQELA------------------------------------------------AN 104 (176)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHH------------------------------------------------HS
T ss_pred hHHHHHHHHHHHHhhcccchHHHHHHHHHH------------------------------------------------hC
Confidence 6555544444321 1122234444444433 34
Q ss_pred cCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH
Q 005877 239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG----EPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR 311 (672)
Q Consensus 239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 311 (672)
++++.+++.+|.++... +++++|+..|+++++.. ++.++..+|.++.. .++.++|+..|++++.
T Consensus 105 P~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~----~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 105 PDNFELACELAVQYNQV-----GRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA----LGQGNAIASKYRRQLY 172 (176)
T ss_dssp TTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH----HCSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH----hCCCCcHHHHHHHHHH
Confidence 56889999999999888 49999999999998753 35688999999988 8888999999988764
No 105
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.18 E-value=3.9e-10 Score=114.00 Aligned_cols=62 Identities=16% Similarity=0.032 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHcCCCCCCCHHHH-HHHHHHHHhcC
Q 005877 505 HAALLIGDAYYYGRGTQRDYERAAEAYMHARSQS--------NAQAMFNLGYMHEHGQGLPLDLHLA-KRYYDQALEVD 574 (672)
Q Consensus 505 ~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~--------~~~a~~~Lg~~y~~g~g~~~d~~~A-~~~~~~A~~~~ 574 (672)
.+++++|.+|. ..+++++|+.++++|++.. -+.+++++|.+|.. .|++++| ..+|++|+++.
T Consensus 197 ~~~~nlg~~y~----~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 197 KVRYNHAKALY----LDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK----LEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHH----HHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHHHH
Confidence 57889999999 8999999999999997641 17889999999988 8999999 88999998764
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.17 E-value=2.4e-10 Score=115.24 Aligned_cols=163 Identities=12% Similarity=-0.021 Sum_probs=122.5
Q ss_pred hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhcc
Q 005877 120 MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLIS 197 (672)
Q Consensus 120 ~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~ 197 (672)
.++++++++.+|..+.. .+++++|+..|++++. ++++.+++.||.++...|++++|+..|++++...+...
T Consensus 113 lp~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~--- 185 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQ----ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR--- 185 (287)
T ss_dssp SCCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH---
T ss_pred cCCchhhHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH---
Confidence 37888999999999998 9999999999999875 79999999999999999999999999998865432110
Q ss_pred CCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH
Q 005877 198 KDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD 275 (672)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~--~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~ 275 (672)
......+..+...++.++|+..+++++. ++++.+++.||.+|... +++++|+..|+++++
T Consensus 186 -------------~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~-----g~~~~A~~~l~~~l~ 247 (287)
T 3qou_A 186 -------------YQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQV-----GRNEEALELLFGHLR 247 (287)
T ss_dssp -------------HHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHh
Confidence 0111234445566667777777777643 35777777777777776 377777777777776
Q ss_pred c--CC--HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH
Q 005877 276 K--GE--PQSMEFLGEIYARGAGVERNYTKALEWLTHAAR 311 (672)
Q Consensus 276 ~--~~--~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 311 (672)
. ++ +.++..||.++.. .++.++|+..|++++.
T Consensus 248 ~~p~~~~~~a~~~l~~~~~~----~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 248 XDLTAADGQTRXTFQEILAA----LGTGDALASXYRRQLY 283 (287)
T ss_dssp HCTTGGGGHHHHHHHHHHHH----HCTTCHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHH----cCCCCcHHHHHHHHHH
Confidence 3 33 6677777777777 7777777777777654
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.17 E-value=4.7e-10 Score=124.77 Aligned_cols=147 Identities=14% Similarity=-0.001 Sum_probs=103.5
Q ss_pred hhHHHHHHHHHHH--HhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHH
Q 005877 106 RVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVK 181 (672)
Q Consensus 106 ~~~~~A~~~~~~a--~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~ 181 (672)
+++++|+..|+++ .+++++.+++.+|.+|.. .+++++|+.+|+++++ ++++.+++.+|.+|...|++++|+.
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELG----MGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 6778888888884 456788899999999988 8899999999999887 5788899999999999999999999
Q ss_pred HHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc
Q 005877 182 LYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRR 261 (672)
Q Consensus 182 ~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~ 261 (672)
+|+++++. +++++.+++.+|.+|... +
T Consensus 79 ~~~~al~~------------------------------------------------~p~~~~~~~~la~~~~~~-----g 105 (568)
T 2vsy_A 79 LLQQASDA------------------------------------------------APEHPGIALWLGHALEDA-----G 105 (568)
T ss_dssp HHHHHHHH------------------------------------------------CTTCHHHHHHHHHHHHHT-----T
T ss_pred HHHHHHhc------------------------------------------------CCCCHHHHHHHHHHHHHc-----C
Confidence 99888763 234667777777777776 3
Q ss_pred CHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCc---CCHHHHHHHHHHHHHcC
Q 005877 262 DRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVE---RNYTKALEWLTHAARQQ 313 (672)
Q Consensus 262 ~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~---~~~~~A~~~~~~a~~~~ 313 (672)
++++|+++|+++++ ++++.++..+|.++.. . +++++|+..|+++++.+
T Consensus 106 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 106 QAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR----LCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCCTTHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhccccHHHHHHHHHHHHhcC
Confidence 77777777777766 3567777777777777 6 77777777777777653
No 108
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.17 E-value=7e-10 Score=112.14 Aligned_cols=157 Identities=10% Similarity=-0.022 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--C------HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--
Q 005877 280 QSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--L------YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-- 349 (672)
Q Consensus 280 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~------~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~-- 349 (672)
......+..+.. .+++++|+.+++++++.. . ...++.+|.+|.. .+++++|+.+|+++++.
T Consensus 76 ~~l~~~~~~~~~----~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~A~~~~~~al~~~~ 146 (293)
T 2qfc_A 76 KQFKDQVIMLCK----QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK-----KVDYEYCILELKKLLNQQL 146 (293)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHT-----SSCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHH----hhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHh
Confidence 344556677777 899999999999988753 1 2345678888774 56999999999999864
Q ss_pred --C----CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH---c--CC----HHHHHHHHHHHHcCCCccCCHHHHHHH
Q 005877 350 --E----EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN---A--GH----QKAFYQLAKMFHTGVGLKKNLHMATAL 414 (672)
Q Consensus 350 --~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~---~--~~----~~a~~~L~~~y~~g~g~~~~~~~A~~~ 414 (672)
. ...+++++|.+|.. .+++++|+.+|++|++ . ++ ..+++++|.+|.. .+++++|+.+
T Consensus 147 ~~~~~~~~~~~~~~lg~~y~~----~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~Al~~ 218 (293)
T 2qfc_A 147 TGIDVYQNLYIENAIANIYAE----NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQ 218 (293)
T ss_dssp CSSCTTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH----HhhHHHHHHH
Confidence 1 15688999999999 9999999999999984 2 22 2688999999998 9999999999
Q ss_pred HHHHHHcCC--------hhHHHHHHHHHHhcCCHHHH-HHHHHHHHHc
Q 005877 415 YKLVAERGP--------WSSLSRWALESYLKGDVGKA-FLLYSRMAEL 453 (672)
Q Consensus 415 ~~~a~~~~~--------~~a~~~lg~~~~~~g~~~~A-~~~~~~a~~~ 453 (672)
|+++++..+ ..+++++|.++...|++++| ..+|++|+..
T Consensus 219 ~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 219 VNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 999987642 45789999999999999999 7889998653
No 109
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.15 E-value=8.5e-10 Score=105.30 Aligned_cols=128 Identities=16% Similarity=0.127 Sum_probs=94.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh--CCCH
Q 005877 427 LSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE--QGNE 504 (672)
Q Consensus 427 ~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~ 504 (672)
++.+|..++..|++++|+..|+++++. ++.++.++|.++.. .+++++|+.+++++++ +.++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~lg~~~~~----------------~g~~~~A~~~~~~al~~~~~~~ 71 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDP-HSRICFNIGCMYTI----------------LKNMTEAEKAFTRSINRDKHLA 71 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSC-CHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCC-ChHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHhCccch
Confidence 445555666666666666666666533 55566666666655 5566666666665543 5567
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CC----------------HHHHHHHHHHHHcCCCCCCCHHHHHHH
Q 005877 505 HAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SN----------------AQAMFNLGYMHEHGQGLPLDLHLAKRY 566 (672)
Q Consensus 505 ~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~----------------~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 566 (672)
.+++++|.+|. ..+++++|+.+|+++++. ++ +.+++++|.+|.. .|++++|+++
T Consensus 72 ~~~~~lg~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 143 (213)
T 1hh8_A 72 VAYFQRGMLYY----QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK----KEEWKKAEEQ 143 (213)
T ss_dssp HHHHHHHHHHH----HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred HHHHHHHHHHH----HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH----ccCHHHHHHH
Confidence 88889999999 789999999999999873 33 3899999999987 8899999999
Q ss_pred HHHHHhcCCCCcc
Q 005877 567 YDQALEVDPAAKL 579 (672)
Q Consensus 567 ~~~A~~~~~~~~~ 579 (672)
|+++++.+|+...
T Consensus 144 ~~~al~~~p~~~~ 156 (213)
T 1hh8_A 144 LALATSMKSEPRH 156 (213)
T ss_dssp HHHHHTTCCSGGG
T ss_pred HHHHHHcCccccc
Confidence 9999999987644
No 110
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.14 E-value=1.6e-10 Score=104.06 Aligned_cols=71 Identities=15% Similarity=0.210 Sum_probs=63.0
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877 500 EQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA 577 (672)
Q Consensus 500 ~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 577 (672)
+|.++.+++++|.+|. ..+++++|+.+|++|++ ++++.++++||.+|.. .|++++|+.+|++|+++.|+.
T Consensus 66 ~P~~~~~~~~lg~~~~----~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~----lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 66 DFYNVDYIMGLAAIYQ----IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR----LKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp CTTCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCH
T ss_pred CCCCHHHHHHHHHHHH----HHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCH
Confidence 4667888889999999 88999999999999976 5789999999999988 899999999999999999885
Q ss_pred c
Q 005877 578 K 578 (672)
Q Consensus 578 ~ 578 (672)
.
T Consensus 138 ~ 138 (151)
T 3gyz_A 138 K 138 (151)
T ss_dssp H
T ss_pred H
Confidence 3
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.14 E-value=1.1e-09 Score=110.40 Aligned_cols=160 Identities=13% Similarity=-0.066 Sum_probs=103.6
Q ss_pred cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--C
Q 005877 276 KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--E 351 (672)
Q Consensus 276 ~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~ 351 (672)
++++.+++.+|..+.. .+++++|+..|+++++. +++.++..||.++.. .|++++|+.+|+++.+.+ .
T Consensus 114 p~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~-----~g~~~~A~~~l~~~~~~~p~~ 184 (287)
T 3qou_A 114 PREEELXAQQAMQLMQ----ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIA-----LNRSEDAEAVLXTIPLQDQDT 184 (287)
T ss_dssp CCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH-----TTCHHHHHHHHTTSCGGGCSH
T ss_pred CCchhhHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH-----CCCHHHHHHHHHhCchhhcch
Confidence 4555666666666666 67777777777776643 466677777777664 457777777777665542 2
Q ss_pred HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC----hh
Q 005877 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP----WS 425 (672)
Q Consensus 352 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~----~~ 425 (672)
.......+..+.. .++.++|+..|+++++ ++++.+++++|.++.. .+++++|+..|+++++..| ..
T Consensus 185 ~~~~~~~~~~l~~----~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~----~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 185 RYQGLVAQIELLX----QAADTPEIQQLQQQVAENPEDAALATQLALQLHQ----VGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp HHHHHHHHHHHHH----HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred HHHHHHHHHHHHh----hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcccccccch
Confidence 3334444444555 5566667777777665 3466777777777776 6777777777777776653 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005877 426 SLSRWALESYLKGDVGKAFLLYSRMAE 452 (672)
Q Consensus 426 a~~~lg~~~~~~g~~~~A~~~~~~a~~ 452 (672)
+...++.++...|+.++|...|++++.
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 566777777777777777777777653
No 112
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.14 E-value=2.8e-09 Score=92.55 Aligned_cols=127 Identities=31% Similarity=0.354 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh--C
Q 005877 426 SLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE--Q 501 (672)
Q Consensus 426 a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~ 501 (672)
+++.+|..+...|++++|+.+++++++. .+..++.+++.++.. .+++++|+.+++++.. +
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----------------~~~~~~A~~~~~~~~~~~~ 66 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK----------------QGDYDEAIEYYQKALELDP 66 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----------------HTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH----------------hcCHHHHHHHHHHHHHHCC
Confidence 3445555555555555555555555443 245555555555554 4556666666665433 4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877 502 GNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA 576 (672)
Q Consensus 502 ~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 576 (672)
.++.+++.+|.++. ..+++++|+.+++++++. .++.+++.+|.+|.. .+++++|..+++++++.+|+
T Consensus 67 ~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 67 RSAEAWYNLGNAYY----KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TCHHHHHHHHHHHH----TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHSTT
T ss_pred CchHHHHHHHHHHH----HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----HccHHHHHHHHHHHHccCCC
Confidence 55778889999999 889999999999998764 678899999999987 88999999999999998875
No 113
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.12 E-value=2.9e-09 Score=107.55 Aligned_cols=162 Identities=14% Similarity=0.053 Sum_probs=110.1
Q ss_pred HHHHHHHcCCCchhcHHHHHHHHHHHHHcC--CHH------HHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC----C-
Q 005877 357 NLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQK------AFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----P- 423 (672)
Q Consensus 357 ~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~------a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~----~- 423 (672)
.....+.. .+++++|...++++.+.. .+. .+..+|.++.. .+++++|+.+|+++++.. +
T Consensus 80 ~~i~~~~~----~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~Ai~~~~~al~~~~~~~~~ 151 (293)
T 3u3w_A 80 DQVIMLCK----QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK----KVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHH----TTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTT----SSCHHHHHHHHHHHHHTCCCCSCT
T ss_pred HHHHHHHH----HhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHc----ccCHHHHHHHHHHHHHHhcccccH
Confidence 34555666 777777777777776632 121 22236666654 567777777777777632 1
Q ss_pred ---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh
Q 005877 424 ---WSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE 500 (672)
Q Consensus 424 ---~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 500 (672)
..++.++|.+|...|++++|+.+|+++++.- ... + . ..
T Consensus 152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~------------~~~------------~---~------------~~ 192 (293)
T 3u3w_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQL------------EAL------------H---D------------NE 192 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------HHS------------S---C------------CH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH------------Hhc------------c---c------------ch
Confidence 1246667777777777777777777666521 000 0 0 00
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc----C----CHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHH
Q 005877 501 QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ----S----NAQAMFNLGYMHEHGQGLPL-DLHLAKRYYDQAL 571 (672)
Q Consensus 501 ~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~----~----~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~ 571 (672)
+....+++++|.+|. ..+++++|+.++++|++. + -+.+++++|.+|.. .| ++++|+++|++|+
T Consensus 193 ~~~~~~~~nlg~~y~----~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 193 EFDVKVRYNHAKALY----LDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK----LEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH----hCCcHHHHHHHHHHHH
Confidence 112457789999999 899999999999999763 1 27899999999987 67 5799999999998
Q ss_pred hc
Q 005877 572 EV 573 (672)
Q Consensus 572 ~~ 573 (672)
++
T Consensus 265 ~i 266 (293)
T 3u3w_A 265 FF 266 (293)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 114
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.12 E-value=3.2e-10 Score=111.83 Aligned_cols=179 Identities=11% Similarity=-0.027 Sum_probs=130.9
Q ss_pred hhcHHHHHHHHHHHHHcC--CHHHHHHH-------HHHHHcCCCccCCHHHHHHHHHHHHHcCC----------------
Q 005877 369 KRDVKLACKYFLVAANAG--HQKAFYQL-------AKMFHTGVGLKKNLHMATALYKLVAERGP---------------- 423 (672)
Q Consensus 369 ~~~~~~A~~~~~~A~~~~--~~~a~~~L-------~~~y~~g~g~~~~~~~A~~~~~~a~~~~~---------------- 423 (672)
.+|+..|...|.++++.. ..+++..+ +.++.. .....+++..++++++..+
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~----~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFR----AWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHH----HHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHH----HHHHHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence 456666666666665533 34444444 333333 3334555555555555321
Q ss_pred -------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHH
Q 005877 424 -------WSSLSRWALESYLKGDVGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSL 494 (672)
Q Consensus 424 -------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g--~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 494 (672)
......++..+...|++++|...|......+ +. +++.+|.++.+ .+++++|+.+
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~----------------~~r~~dA~~~ 157 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGA----------------AERWTDVIDQ 157 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHH----------------TTCHHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHH----------------cCCHHHHHHH
Confidence 1233456677888899999999998876544 34 78888888877 7789999999
Q ss_pred HHHHHhCCC----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHcCCCCCCCHHHHHH
Q 005877 495 WWQASEQGN----EHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQS-----NAQAMFNLGYMHEHGQGLPLDLHLAKR 565 (672)
Q Consensus 495 ~~~a~~~~~----~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~-----~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 565 (672)
++.+....+ .++.++||.++. ..+++++|+.+|+++.... .+.+++++|.++.. .|+.++|..
T Consensus 158 l~~a~~~~d~~~~~~a~~~LG~al~----~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~----lGr~deA~~ 229 (282)
T 4f3v_A 158 VKSAGKWPDKFLAGAAGVAHGVAAA----NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS----QGNESAAVA 229 (282)
T ss_dssp HTTGGGCSCHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH----HTCHHHHHH
T ss_pred HHHhhccCCcccHHHHHHHHHHHHH----HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH----cCCHHHHHH
Confidence 987766543 358899999999 8999999999999998654 45799999999988 899999999
Q ss_pred HHHHHHhcCCC
Q 005877 566 YYDQALEVDPA 576 (672)
Q Consensus 566 ~~~~A~~~~~~ 576 (672)
.|+++...+|+
T Consensus 230 ~l~~a~a~~P~ 240 (282)
T 4f3v_A 230 LLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHSCC
T ss_pred HHHHHHhcCCc
Confidence 99999999998
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.10 E-value=3e-09 Score=107.43 Aligned_cols=151 Identities=9% Similarity=-0.015 Sum_probs=122.1
Q ss_pred HHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHH------HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC----CC--
Q 005877 286 GEIYARGAGVERNYTKALEWLTHAARQQ--LYS------AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EE-- 351 (672)
Q Consensus 286 g~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~------a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----~~-- 351 (672)
...+.. .+++++|+..++++.+.. .+. .+..+|.+|.. .+++++|+.+|+++++. ++
T Consensus 82 i~~~~~----~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~Ai~~~~~al~~~~~~~~~~ 152 (293)
T 3u3w_A 82 VIMLCK----QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK-----KVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHH----TTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTT-----SSCHHHHHHHHHHHHHTCCCCSCTT
T ss_pred HHHHHH----HhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHc-----ccCHHHHHHHHHHHHHHhcccccHH
Confidence 445555 789999999999998743 222 33457888764 56999999999999874 22
Q ss_pred --HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH----c-C----CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHH
Q 005877 352 --AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN----A-G----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAE 420 (672)
Q Consensus 352 --~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~----~-~----~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~ 420 (672)
..++.++|.+|.. .+++++|+.+|+++++ . + ...+++++|.+|.. .+++++|+.+++++++
T Consensus 153 ~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 153 QNLYIENAIANIYAE----NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHH
Confidence 4478999999999 9999999999999985 1 2 24588999999998 9999999999999987
Q ss_pred cCC--------hhHHHHHHHHHHhcC-CHHHHHHHHHHHHHc
Q 005877 421 RGP--------WSSLSRWALESYLKG-DVGKAFLLYSRMAEL 453 (672)
Q Consensus 421 ~~~--------~~a~~~lg~~~~~~g-~~~~A~~~~~~a~~~ 453 (672)
..+ ..+++++|.++...| ++++|+.+|++|++.
T Consensus 225 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 225 ISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 541 457899999999999 579999999999764
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.09 E-value=2.1e-09 Score=102.49 Aligned_cols=126 Identities=19% Similarity=0.141 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHH
Q 005877 316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQ 393 (672)
Q Consensus 316 ~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~ 393 (672)
..++.+|..+.. .+++++|+.+|+++++. ++.+++++|.+|.. .+++++|+.+|+++++. .++.++++
T Consensus 7 ~~~~~~g~~~~~-----~~~~~~A~~~~~~a~~~-~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~ 76 (213)
T 1hh8_A 7 ISLWNEGVLAAD-----KKDWKGALDAFSAVQDP-HSRICFNIGCMYTI----LKNMTEAEKAFTRSINRDKHLAVAYFQ 76 (213)
T ss_dssp HHHHHHHHHHHH-----TTCHHHHHHHHHTSSSC-CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHH-----hCCHHHHHHHHHHHcCC-ChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 345667777764 45778888888777633 67777888888877 77888888888887763 46777888
Q ss_pred HHHHHHcCCCccCCHHHHHHHHHHHHHcCCh------------------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 005877 394 LAKMFHTGVGLKKNLHMATALYKLVAERGPW------------------SSLSRWALESYLKGDVGKAFLLYSRMAELGY 455 (672)
Q Consensus 394 L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~------------------~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~ 455 (672)
+|.+|.. .+++++|+.+|+++++..+. .+++++|.++...|++++|+.+|+++++...
T Consensus 77 lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 77 RGMLYYQ----TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHH----cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 8888877 78888888888888775432 6788999999999999999999999987753
No 117
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.06 E-value=1.5e-09 Score=97.77 Aligned_cols=97 Identities=14% Similarity=0.137 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhH
Q 005877 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSS 426 (672)
Q Consensus 351 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a 426 (672)
++.+++.+|.++.. .+++++|+.+|+++++ +.++.+++++|.+|.. .+++++|+..|+++++..| +.+
T Consensus 35 ~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~----~g~~~~Ai~~~~~al~l~P~~~~~ 106 (151)
T 3gyz_A 35 MMDDIYSYAYDFYN----KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI----KEQFQQAADLYAVAFALGKNDYTP 106 (151)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HccHHHHHHHHHHHHhhCCCCcHH
Confidence 56677777777777 7777777777777766 3467777777777776 7777788888877777663 567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 005877 427 LSRWALESYLKGDVGKAFLLYSRMAELGY 455 (672)
Q Consensus 427 ~~~lg~~~~~~g~~~~A~~~~~~a~~~g~ 455 (672)
++++|.++...|++++|+..|+++++...
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 77777777778888888888888777653
No 118
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.05 E-value=5.8e-10 Score=109.99 Aligned_cols=196 Identities=8% Similarity=0.020 Sum_probs=116.1
Q ss_pred cCCHHHHHHHHHHHHh--CCCHHHHHHH-------HHHHhccCCHHHHHHHHHHHHHHHHhhhhccCC-CCcc--cchhc
Q 005877 141 ERNKGKAFLYHHFAAE--GGNIQSKMAV-------AYTYLRQDMHDKAVKLYAELAEIAVNSFLISKD-SPVI--EPIRI 208 (672)
Q Consensus 141 ~~d~~~A~~~~~~A~~--~~~~~a~~~L-------g~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~-~~~~--~~~~l 208 (672)
.+|...|..+|.++++ ++..++++.+ +.++.......+++..+++.+.+.+..+...-. .+.. -.+++
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v 98 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV 98 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccccc
Confidence 7899999999999876 7899999999 788888888888999999888766554322111 1110 00000
Q ss_pred ccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 005877 209 HNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLG 286 (672)
Q Consensus 209 ~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg 286 (672)
. .-.+..+.++.++... +++++|.+.|+..+.. ++. +.+.+|
T Consensus 99 ~------------------------------~r~dl~LayA~~L~~~-----g~y~eA~~~l~~~~~~~p~~~-~~~~~a 142 (282)
T 4f3v_A 99 T------------------------------SPLAITMGFAACEAAQ-----GNYADAMEALEAAPVAGSEHL-VAWMKA 142 (282)
T ss_dssp S------------------------------SHHHHHHHHHHHHHHH-----TCHHHHHHHHTSSCCTTCHHH-HHHHHH
T ss_pred C------------------------------CHhHHHHHHHHHHHHC-----CCHHHHHHHHHHHHhcCCchH-HHHHHH
Confidence 0 0123344445555444 2555555555554432 223 555555
Q ss_pred HHHHcCCCCcCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC-----CHHHHHH
Q 005877 287 EIYARGAGVERNYTKALEWLTHAARQQLY----SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-----EAGGHYN 357 (672)
Q Consensus 287 ~~y~~g~g~~~~~~~A~~~~~~a~~~~~~----~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~-----~~~a~~~ 357 (672)
.++.. .+++++|+.+|+++....++ .+.+.||.++.. .|++++|+.+|++++... .++++++
T Consensus 143 ~l~~~----~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~-----LG~~~eAl~~l~~a~~g~~~P~~~~da~~~ 213 (282)
T 4f3v_A 143 VVYGA----AERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN-----LALFTEAERRLTEANDSPAGEACARAIAWY 213 (282)
T ss_dssp HHHHH----TTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHTSTTTTTTHHHHHHH
T ss_pred HHHHH----cCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHhcCCCCccccHHHHHH
Confidence 55555 56666666666555443322 355666666654 446666666666665433 2346666
Q ss_pred HHHHHHcCCCchhcHHHHHHHHHHHHHc
Q 005877 358 LGVMYYKGIGVKRDVKLACKYFLVAANA 385 (672)
Q Consensus 358 Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 385 (672)
+|.++.. .|+.++|...|+++...
T Consensus 214 ~glaL~~----lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 214 LAMARRS----QGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred HHHHHHH----cCCHHHHHHHHHHHHhc
Confidence 6666666 66666666666666543
No 119
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.03 E-value=2.1e-09 Score=93.75 Aligned_cols=98 Identities=19% Similarity=0.258 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHH
Q 005877 426 SLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEH 505 (672)
Q Consensus 426 a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 505 (672)
++.++|..++..|++++|+.+|++|++. .|.++.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~----------------------------------------------~p~~~~ 43 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL----------------------------------------------DPSNIT 43 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------------------------CTTCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------------------------------CCCCHH
Confidence 4556777777777777777777777653 355677
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CC-------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877 506 AALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SN-------AQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA 576 (672)
Q Consensus 506 a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~-------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 576 (672)
+++++|.+|. ..+++++|+.++++|++. .+ +.+++++|.+|.. .+++++|+++|++|++..|+
T Consensus 44 ~~~nlg~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~----~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 44 FYNNKAAVYF----EEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQK----QNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSCC
T ss_pred HHHhHHHHHH----HhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcC
Confidence 7888888888 789999999999998764 11 4688899999887 88999999999999988876
Q ss_pred C
Q 005877 577 A 577 (672)
Q Consensus 577 ~ 577 (672)
.
T Consensus 116 ~ 116 (127)
T 4gcn_A 116 P 116 (127)
T ss_dssp H
T ss_pred H
Confidence 3
No 120
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.03 E-value=7.2e-10 Score=99.65 Aligned_cols=111 Identities=15% Similarity=0.142 Sum_probs=85.2
Q ss_pred HHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHH
Q 005877 413 ALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQC 490 (672)
Q Consensus 413 ~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~ 490 (672)
..|+++++..| ..+++.+|..++..|++++|+..|+++++.
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------------------------------------- 50 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL------------------------------------- 50 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------------------
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-------------------------------------
Confidence 34555555543 334556666666666666666666655442
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 005877 491 AHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYD 568 (672)
Q Consensus 491 A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 568 (672)
.+.++.+++++|.+|. ..+++++|+.+|+++++ ++++.+++++|.+|.. .|++++|+.+|+
T Consensus 51 ---------~p~~~~~~~~lg~~~~----~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~ 113 (148)
T 2vgx_A 51 ---------DHYDSRFFLGLGACRQ----AMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ----XGELAEAESGLF 113 (148)
T ss_dssp ---------CTTCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH----TTCHHHHHHHHH
T ss_pred ---------CcccHHHHHHHHHHHH----HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH----cCCHHHHHHHHH
Confidence 4567788889999999 88999999999999976 4789999999999987 899999999999
Q ss_pred HHHhcCCCC
Q 005877 569 QALEVDPAA 577 (672)
Q Consensus 569 ~A~~~~~~~ 577 (672)
++++++|+.
T Consensus 114 ~al~~~p~~ 122 (148)
T 2vgx_A 114 LAQELIANX 122 (148)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHCcCC
Confidence 999998764
No 121
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.03 E-value=1.2e-08 Score=88.42 Aligned_cols=110 Identities=28% Similarity=0.457 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHH
Q 005877 335 NYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHM 410 (672)
Q Consensus 335 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~ 410 (672)
++++|+.+|+++++. +++.+++.+|.++.. .+++++|+.+|+++.+. .++.+++.+|.++.. .+++++
T Consensus 16 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 87 (136)
T 2fo7_A 16 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK----QGDYDE 87 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHH
T ss_pred cHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH----hcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH----hcCHHH
Confidence 444444444444332 234444444444444 44444444444444432 233444444444443 444555
Q ss_pred HHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005877 411 ATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (672)
Q Consensus 411 A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 452 (672)
|+.+++++++..+ +.++..+|.++...|++++|+.+++++++
T Consensus 88 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 88 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 5555544444432 23344445555555555555555555543
No 122
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.01 E-value=6.4e-08 Score=97.51 Aligned_cols=231 Identities=9% Similarity=0.006 Sum_probs=174.9
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHH
Q 005877 261 RDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTK 338 (672)
Q Consensus 261 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~ 338 (672)
.++.++..+++...+.+ ...++|+..+.++++. .+..+.+.-|.+...... .++++
T Consensus 30 ~~y~~~~~~~~a~~~~~-------------------e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~---~~~~e 87 (306)
T 3dra_A 30 EDYKQIMGLLLALMKAE-------------------EYSERALHITELGINELASHYTIWIYRFNILKNLPN---RNLYD 87 (306)
T ss_dssp HHHHHHHHHHHHHHHTT-------------------CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTT---SCHHH
T ss_pred HHHHHHHHHHHHHHHcC-------------------CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHccc---ccHHH
Confidence 36677777777655543 3346788888888875 478888888888875100 28899
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHH----HcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHH-
Q 005877 339 AKEYFEKAADN--EEAGGHYNLGVMY----YKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLH- 409 (672)
Q Consensus 339 A~~~~~~a~~~--~~~~a~~~Lg~~y----~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~- 409 (672)
++.++.+++.. .+..++++-+.+. ... +..+++++++.++.++++. .+..++++-+.+... .+.++
T Consensus 88 eL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l-~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~----l~~~~~ 162 (306)
T 3dra_A 88 ELDWCEEIALDNEKNYQIWNYRQLIIGQIMELN-NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDT----FDLHND 162 (306)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHT-TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCTTC
T ss_pred HHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhc-cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcccCh
Confidence 99999998876 4788888888887 441 1126788999999999874 478889888888876 56666
Q ss_pred -HHHHHHHHHHHcC--ChhHHHHHHHHHHhcCC------HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCC
Q 005877 410 -MATALYKLVAERG--PWSSLSRWALESYLKGD------VGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGE 478 (672)
Q Consensus 410 -~A~~~~~~a~~~~--~~~a~~~lg~~~~~~g~------~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~ 478 (672)
+++++++++++.+ +..++...+.+....+. +++++.++.+++.. ++..++++++.++.+.+..
T Consensus 163 ~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~------ 236 (306)
T 3dra_A 163 AKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRS------ 236 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCC------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCC------
Confidence 9999999999887 45678888888888776 89999999999655 6999999999999884321
Q ss_pred CCCCCchHhHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 005877 479 SGFCTDAERHQCAHSLWWQASE-----QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ 537 (672)
Q Consensus 479 ~~~~~~~~~~~~A~~~~~~a~~-----~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~ 537 (672)
........++.++ +.++.++..++++|. ..++.++|+++|+++++.
T Consensus 237 ---------~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~----~~~~~~~A~~~~~~l~~~ 287 (306)
T 3dra_A 237 ---------ITQLEEFSLQFVDLEKDQVTSSFALETLAKIYT----QQKKYNESRTVYDLLKSK 287 (306)
T ss_dssp ---------GGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHT
T ss_pred ---------hHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH----ccCCHHHHHHHHHHHHhc
Confidence 2223334444333 457899999999999 789999999999999863
No 123
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.01 E-value=7.5e-10 Score=114.31 Aligned_cols=146 Identities=15% Similarity=0.075 Sum_probs=109.3
Q ss_pred hhhHHHHHHHHHHH--HhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCC---------------HHHHHH
Q 005877 105 VRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGN---------------IQSKMA 165 (672)
Q Consensus 105 ~~~~~~A~~~~~~a--~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~---------------~~a~~~ 165 (672)
..++++|+..++++ .++.++.+++.+|.+|.. .+++++|+.+|++++. +.+ ..++++
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~----~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~n 201 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFK----EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLN 201 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHH
Confidence 35566777777763 345677888888888888 8888888888888876 445 477777
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHH
Q 005877 166 VAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAM 245 (672)
Q Consensus 166 Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~ 245 (672)
+|.+|...+++++|+.+|+++++. ++.++.++
T Consensus 202 la~~~~~~g~~~~A~~~~~~al~~------------------------------------------------~p~~~~a~ 233 (336)
T 1p5q_A 202 LAMCHLKLQAFSAAIESCNKALEL------------------------------------------------DSNNEKGL 233 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH------------------------------------------------CTTCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh------------------------------------------------CCCcHHHH
Confidence 788887777777777777777653 34577888
Q ss_pred HHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHH-HHHHHHHHH
Q 005877 246 YKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKA-LEWLTHAAR 311 (672)
Q Consensus 246 ~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A-~~~~~~a~~ 311 (672)
+.+|.+|... +++++|+.+|+++++ ++++.++..+|.++.. .+++++| ...|++.+.
T Consensus 234 ~~lg~~~~~~-----g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 234 SRRGEAHLAV-----NDFELARADFQKVLQLYPNNKAAKTQLAVCQQR----IRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHT-----TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-----CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 8888888877 488888888888876 4678888888888887 7788777 445665543
No 124
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.99 E-value=3.8e-09 Score=106.05 Aligned_cols=190 Identities=10% Similarity=-0.067 Sum_probs=124.9
Q ss_pred CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhH
Q 005877 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSS 426 (672)
Q Consensus 351 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a 426 (672)
++.+++.+|..+.. .+++++|+..|+++++ +.++.+++++|.+|.. .+++++|+..|+++++..+ +.+
T Consensus 3 ~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~ 74 (281)
T 2c2l_A 3 SAQELKEQGNRLFV----GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQALADCRRALELDGQSVKA 74 (281)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred hHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHH
Confidence 45667777777777 7777777777777766 3467777778877776 7778888888888777663 556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHH--HhCC
Q 005877 427 LSRWALESYLKGDVGKAFLLYSRMAELGYEV--AQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQA--SEQG 502 (672)
Q Consensus 427 ~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~--a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a--~~~~ 502 (672)
++.+|.++...|++++|+..|+++++.+... ......+.. -+..++..+.... ..+.
T Consensus 75 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~ 135 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA-------------------LRIAKKKRWNSIEERRIHQ 135 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHH-------------------HHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHH-------------------HHHHHHHHHHHHHHHHHhh
Confidence 7777888888888888888888876553211 100111111 0122223333322 2334
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877 503 NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA 576 (672)
Q Consensus 503 ~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 576 (672)
++.....+|.++. +++++|++.|++|++. ++......++.++.. ..+.+++|.+.|+++.+..+.
T Consensus 136 ~~~i~~~l~~l~~------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---~~~~~~~a~~~f~~a~~~~~~ 202 (281)
T 2c2l_A 136 ESELHSYLTRLIA------AERERELEECQRNHEGHEDDGHIRAQQACIEAK---HDKYMADMDELFSQVDEKRKK 202 (281)
T ss_dssp CCHHHHHHHHHHH------HHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHH---HHHHHHHHHHHHHHSSCTTSC
T ss_pred hHHHHHHHHHHHH------HHHHHHHHHHHhhhccccchhhhhhHHHHHHHH---HHHHHHHHHHHHHhhhccccC
Confidence 5666677777764 8999999999999875 455556666666543 135688999999999876443
No 125
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.97 E-value=9.1e-09 Score=89.66 Aligned_cols=93 Identities=17% Similarity=0.172 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC-------
Q 005877 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP------- 423 (672)
Q Consensus 353 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~------- 423 (672)
.++.+||..+.. .+++++|+.+|++|++ +.++.+++++|.+|.. .+++++|+..|+++++..+
T Consensus 9 ~a~~~lG~~~~~----~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~ 80 (127)
T 4gcn_A 9 IAEKDLGNAAYK----QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE----EKKFAECVQFCEKAVEVGRETRADYK 80 (127)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH----hhhHHHHHHHHHHHHHhCcccchhhH
Confidence 344555555555 5555555555555554 2345555555555555 5555555555555555432
Q ss_pred --hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 424 --WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 424 --~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
..++.++|.++...|++++|+.+|+++++.
T Consensus 81 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 81 LIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 124556666666666777777777666554
No 126
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.96 E-value=8.1e-10 Score=114.09 Aligned_cols=143 Identities=18% Similarity=0.169 Sum_probs=99.3
Q ss_pred CCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C---------------HHHHHHHHHHH
Q 005877 406 KNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRMAELG--Y---------------EVAQSNAAWIL 466 (672)
Q Consensus 406 ~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g--~---------------~~a~~nla~~l 466 (672)
+++++|+.+|+++++.. .+.++..+|..++..|++++|+..|+++++.. + ..++.|+|.++
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333 23345555555555566666666666554442 2 57788888888
Q ss_pred HHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHH
Q 005877 467 DKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE--QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQA 542 (672)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a 542 (672)
.+ .+++++|+.+++++++ +.++.+++++|.+|. ..+++++|+.+|++|++ ++++.+
T Consensus 207 ~~----------------~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~----~~g~~~~A~~~~~~al~l~P~~~~a 266 (336)
T 1p5q_A 207 LK----------------LQAFSAAIESCNKALELDSNNEKGLSRRGEAHL----AVNDFELARADFQKVLQLYPNNKAA 266 (336)
T ss_dssp HH----------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred HH----------------cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHCCCCHHH
Confidence 87 6788899999987654 567888889999998 78899999999999876 467888
Q ss_pred HHHHHHHHHcCCCCCCCHHHH-HHHHHHHHh
Q 005877 543 MFNLGYMHEHGQGLPLDLHLA-KRYYDQALE 572 (672)
Q Consensus 543 ~~~Lg~~y~~g~g~~~d~~~A-~~~~~~A~~ 572 (672)
+.+||.++.. .+++++| ...|++.+.
T Consensus 267 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 267 KTQLAVCQQR----IRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 8999988876 6777777 556666653
No 127
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.95 E-value=7.2e-09 Score=97.73 Aligned_cols=157 Identities=15% Similarity=0.115 Sum_probs=99.8
Q ss_pred hhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC--------ChhHHHHHHHHHHhcC
Q 005877 369 KRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--------PWSSLSRWALESYLKG 438 (672)
Q Consensus 369 ~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~~~~g 438 (672)
.|++++|.+.++..... ....++..+|.++.. .+++++|+.+++++++.. ...++..+|.++...|
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAF----MDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 55666666633333221 234556666666665 566666666666665521 1224555555666666
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC-C----HHHHHHHHHH
Q 005877 439 DVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG-N----EHAALLIGDA 513 (672)
Q Consensus 439 ~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~----~~a~~~lG~~ 513 (672)
++++|+.+++++++.- ...+ + ..+++++|.+
T Consensus 81 ~~~~A~~~~~~al~~~--------------------------------------------~~~~~~~~~~~~~~~~lg~~ 116 (203)
T 3gw4_A 81 NWDAARRCFLEERELL--------------------------------------------ASLPEDPLAASANAYEVATV 116 (203)
T ss_dssp CHHHHHHHHHHHHHHH--------------------------------------------HHSCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH--------------------------------------------HHcCccHHHHHHHHHHHHHH
Confidence 6666655555555431 0111 1 3467899999
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHhc----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcchh
Q 005877 514 YYYGRGTQRDYERAAEAYMHARSQ----SN----AQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPV 581 (672)
Q Consensus 514 y~~g~g~~~d~~~A~~~~~~A~~~----~~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~ 581 (672)
+. ..+++++|+.+++++++. ++ ..++.+||.+|.. .|++++|.+++++|+++.....-+.
T Consensus 117 ~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~ 184 (203)
T 3gw4_A 117 AL----HFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ----EKNLLEAQQHWLRARDIFAELEDSE 184 (203)
T ss_dssp HH----HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HH----HhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHcCCHH
Confidence 99 889999999999999752 33 3457899999987 8999999999999998754444333
No 128
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.95 E-value=9.4e-09 Score=96.91 Aligned_cols=145 Identities=14% Similarity=0.148 Sum_probs=80.3
Q ss_pred ccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHc
Q 005877 222 SRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--------GEPQSMEFLGEIYAR 291 (672)
Q Consensus 222 ~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~ 291 (672)
..|++++|.+.++..... ..+.++..+|.++... +++++|+.+|+++++. ..+.++..+|.+|..
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFM-----DRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM 78 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 456777777733332222 3566677777777666 3777777777777651 224556666666666
Q ss_pred CCCCcCCHHHHHHHHHHHHHc----C-C----HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC----CC----HHH
Q 005877 292 GAGVERNYTKALEWLTHAARQ----Q-L----YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EE----AGG 354 (672)
Q Consensus 292 g~g~~~~~~~A~~~~~~a~~~----~-~----~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----~~----~~a 354 (672)
.+++++|+.+++++++. + + ..++..+|.++.. .|++++|+.+++++++. ++ +.+
T Consensus 79 ----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 149 (203)
T 3gw4_A 79 ----AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALH-----FGDLAGARQEYEKSLVYAQQADDQVAIACA 149 (203)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 66666666666666643 1 1 2345556666654 34666666666665532 22 223
Q ss_pred HHHHHHHHHcCCCchhcHHHHHHHHHHHHH
Q 005877 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAAN 384 (672)
Q Consensus 355 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 384 (672)
+.++|.++.. .+++++|+.+|+++++
T Consensus 150 ~~~la~~~~~----~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 150 FRGLGDLAQQ----EKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----CcCHHHHHHHHHHHHH
Confidence 3455555555 5555555555555543
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.94 E-value=3e-08 Score=89.97 Aligned_cols=126 Identities=13% Similarity=0.049 Sum_probs=80.3
Q ss_pred hHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCC
Q 005877 124 PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSP 201 (672)
Q Consensus 124 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~ 201 (672)
+..++.+|.+|.. .+++++|+.+|++++. +.++.+++.+|.++...|++++|+.+|+++++.
T Consensus 13 ~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------------ 76 (166)
T 1a17_A 13 AEELKTQANDYFK----AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------------ 76 (166)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------
Confidence 3456667777666 6677777777777665 456677777777777777777777777766552
Q ss_pred cccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCH
Q 005877 202 VIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEP 279 (672)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~ 279 (672)
.+.++.+++.+|.++... +++++|+.+|+++++. .++
T Consensus 77 ------------------------------------~~~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~a~~~~p~~~ 115 (166)
T 1a17_A 77 ------------------------------------DKKYIKGYYRRAASNMAL-----GKFRAALRDYETVVKVKPHDK 115 (166)
T ss_dssp ------------------------------------CTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHSTTCH
T ss_pred ------------------------------------CcccHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHhCCCCH
Confidence 234556667777777666 3777777777777653 455
Q ss_pred HHHHHHHH--HHHcCCCCcCCHHHHHHHHHHHH
Q 005877 280 QSMEFLGE--IYARGAGVERNYTKALEWLTHAA 310 (672)
Q Consensus 280 ~a~~~Lg~--~y~~g~g~~~~~~~A~~~~~~a~ 310 (672)
.++..++. .+.. .+++++|+.+++++.
T Consensus 116 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 116 DAKMKYQECNKIVK----QKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHcccchH
Confidence 55533333 3555 566777776666654
No 130
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.93 E-value=7.4e-07 Score=90.31 Aligned_cols=230 Identities=9% Similarity=-0.033 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhc----------HHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCC
Q 005877 337 TKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRD----------VKLACKYFLVAAN--AGHQKAFYQLAKMFHTGV 402 (672)
Q Consensus 337 ~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~----------~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~ 402 (672)
++|+.++.+++.. ++..+++.-+.+... .+. +++++.++.+++. +.+..++++-+.++..
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~----l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~-- 120 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQH----LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR-- 120 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHH----hcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc--
Confidence 5788888888876 477888888877765 332 7899999999987 4588999999999886
Q ss_pred CccC--CHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCC-HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcc
Q 005877 403 GLKK--NLHMATALYKLVAERGP--WSSLSRWALESYLKGD-VGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMC 475 (672)
Q Consensus 403 g~~~--~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~-~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~ 475 (672)
.+ ++++++.++.++++.++ ..++...+.+....|. +++++.++.++++. .+..|+++.+.++.......-.
T Consensus 121 --l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~ 198 (331)
T 3dss_A 121 --LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 198 (331)
T ss_dssp --CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC--
T ss_pred --cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccc
Confidence 34 58999999999999984 5678888998888888 69999999999766 5999999999999885321000
Q ss_pred cCCCCCCCchHhHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhCCCCC-------CCHHHHHHHHHHHHhc--CCHHHHH
Q 005877 476 MGESGFCTDAERHQCAHSLWWQAS--EQGNEHAALLIGDAYYYGRGTQ-------RDYERAAEAYMHARSQ--SNAQAMF 544 (672)
Q Consensus 476 ~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lG~~y~~g~g~~-------~d~~~A~~~~~~A~~~--~~~~a~~ 544 (672)
. .....+.+.++++++++.+++ .|+|..+++.+.+++..+.|.. +-++++++++++.++. ++.-++.
T Consensus 199 ~--~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 199 G--PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred c--cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 0 001123478999999999875 6788999998988888765532 4588999999999764 5654444
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877 545 NLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA 577 (672)
Q Consensus 545 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 577 (672)
.+..+ ..+....+..++...++.+.+++||..
T Consensus 277 ~~~~~-~~~~~~~~~~~~~~~~l~~l~~~Dp~r 308 (331)
T 3dss_A 277 TIILL-MRALDPLLYEKETLQYFSTLKAVDPMR 308 (331)
T ss_dssp HHHHH-HHHHCTTTTHHHHHHHHHHHHHHCGGG
T ss_pred HHHHH-HHhhcccccHHHHHHHHHHHHHhCcch
Confidence 44332 222233577889999999999999984
No 131
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.92 E-value=2.8e-08 Score=90.15 Aligned_cols=125 Identities=15% Similarity=0.061 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHH
Q 005877 315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKA 390 (672)
Q Consensus 315 ~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a 390 (672)
+..+..+|.++.. .+++++|+.+|+++++. .++.+++++|.++.. .+++++|+.+|+++++. .++.+
T Consensus 13 ~~~~~~~a~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~ 83 (166)
T 1a17_A 13 AEELKTQANDYFK-----AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR----TECYGYALGDATRAIELDKKYIKG 83 (166)
T ss_dssp HHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcccHHH
Confidence 4455666666664 45777777777776654 356677777777776 67777777777777653 35667
Q ss_pred HHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHH--HHHHHHHHhcCCHHHHHHHHHHHHH
Q 005877 391 FYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL--SRWALESYLKGDVGKAFLLYSRMAE 452 (672)
Q Consensus 391 ~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~--~~lg~~~~~~g~~~~A~~~~~~a~~ 452 (672)
++++|.++.. .+++++|+.+|+++++..+ ..++ ..++..+...|++++|+..+.++.+
T Consensus 84 ~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 84 YYRRAASNMA----LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 7777777776 6777777777777777654 2333 2333346667777888877776643
No 132
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.92 E-value=6.4e-09 Score=93.37 Aligned_cols=105 Identities=14% Similarity=-0.008 Sum_probs=83.1
Q ss_pred HHHHHHHhCC--CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHH
Q 005877 341 EYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYK 416 (672)
Q Consensus 341 ~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~ 416 (672)
..|+++++.+ ++.+++.+|.++.. .+++++|+..|+++++ +.++.+++++|.++.. .+++++|+.+|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~ 79 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQ----SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA----MGQYDLAIHSYS 79 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHH
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH----HhhHHHHHHHHH
Confidence 3566666653 56778888888888 7888888888888876 4477888888888887 788888888888
Q ss_pred HHHHcC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 417 LVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 417 ~a~~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
++++.. ++.+++++|.++...|++++|+.+|+++++.
T Consensus 80 ~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 80 YGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888776 4567888888888888888888888888665
No 133
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.91 E-value=3.3e-08 Score=105.45 Aligned_cols=190 Identities=15% Similarity=0.072 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcC-------------------CHHHHHHHHHHHHcCCCCcCCHHHH
Q 005877 242 AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG-------------------EPQSMEFLGEIYARGAGVERNYTKA 302 (672)
Q Consensus 242 ~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~-------------------~~~a~~~Lg~~y~~g~g~~~~~~~A 302 (672)
|.+.+.-|.-+... +++++|++.|.++++.. ...++..||.+|.. .+++++|
T Consensus 4 p~~~l~~a~~l~~~-----~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~----~~~~~~a 74 (434)
T 4b4t_Q 4 PGSKLEEARRLVNE-----KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVT----MGAKDKL 74 (434)
T ss_dssp TTHHHHHHHHHHHH-----TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHH----HTCHHHH
T ss_pred hHHHHHHHHHHHHC-----CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHH----CCCHHHH
Confidence 34455556655555 37888888888877631 12468899999999 9999999
Q ss_pred HHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHcCC
Q 005877 303 LEWLTHAARQ----QL----YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--------EEAGGHYNLGVMYYKGI 366 (672)
Q Consensus 303 ~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~ 366 (672)
+++|+++.+. +. ......+|.++.. .+++++|+.+++++++. ..+.++.+||.+|..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-- 147 (434)
T 4b4t_Q 75 REFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQV-----PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQ-- 147 (434)
T ss_dssp HHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSC-----CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH--
Confidence 9999998753 21 2345677877764 56999999999998763 246788999999999
Q ss_pred CchhcHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC-----Ch----hHHHH
Q 005877 367 GVKRDVKLACKYFLVAANA--------GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG-----PW----SSLSR 429 (672)
Q Consensus 367 g~~~~~~~A~~~~~~A~~~--------~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~----~a~~~ 429 (672)
.|++.+|..+++++... ....++..++.+|.. .+|+++|..+|+++.... ++ ..+..
T Consensus 148 --~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 221 (434)
T 4b4t_Q 148 --KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK----LRNLAKSKASLTAARTAANSIYCPTQTVAELDLM 221 (434)
T ss_dssp --HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred --ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Confidence 99999999999998652 135788999999998 999999999999997653 22 23566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 430 WALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 430 lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
+|..+...|++++|..+|.++.+.
T Consensus 222 ~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 222 SGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 788888999999999999999653
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.90 E-value=1.9e-08 Score=92.83 Aligned_cols=120 Identities=11% Similarity=0.118 Sum_probs=88.3
Q ss_pred cCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCC
Q 005877 405 KKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFC 482 (672)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~ 482 (672)
.+++++|+.+++++++..| +.++..+|.++...|++++|+.+|+++++.
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----------------------------- 73 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL----------------------------- 73 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----------------------------
Confidence 5566666666666666553 345566666666666666666666655442
Q ss_pred CchHhHHHHHHHHHHHHhCCCHHHHHHHHHH-HHhCCCCCCCH--HHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCC
Q 005877 483 TDAERHQCAHSLWWQASEQGNEHAALLIGDA-YYYGRGTQRDY--ERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLP 557 (672)
Q Consensus 483 ~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~-y~~g~g~~~d~--~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~ 557 (672)
.+.++.+++.+|.+ |. ..+++ ++|+.+|+++++ ++++.+++++|.+|.. .
T Consensus 74 -----------------~p~~~~~~~~la~~l~~----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~ 128 (177)
T 2e2e_A 74 -----------------RGENAELYAALATVLYY----QASQHMTAQTRAMIDKALALDSNEITALMLLASDAFM----Q 128 (177)
T ss_dssp -----------------HCSCHHHHHHHHHHHHH----HTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----T
T ss_pred -----------------CCCCHHHHHHHHHHHHH----hcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----c
Confidence 35567777888888 66 66888 999999999977 4789999999999987 8
Q ss_pred CCHHHHHHHHHHHHhcCCCCc
Q 005877 558 LDLHLAKRYYDQALEVDPAAK 578 (672)
Q Consensus 558 ~d~~~A~~~~~~A~~~~~~~~ 578 (672)
+++++|+.+|+++++.+|+..
T Consensus 129 g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 129 ANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp TCHHHHHHHHHHHHHTCCTTS
T ss_pred ccHHHHHHHHHHHHhhCCCCc
Confidence 999999999999999998863
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.88 E-value=1.1e-08 Score=102.60 Aligned_cols=99 Identities=13% Similarity=0.003 Sum_probs=88.3
Q ss_pred CcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCC
Q 005877 84 AINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGN 159 (672)
Q Consensus 84 ~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~ 159 (672)
.+.+++.+|..++. .+++++|+..|+++. ++.++.+++.+|.+|.. .+++++|+.+|++++. +++
T Consensus 3 ~a~~~~~~g~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~ 71 (281)
T 2c2l_A 3 SAQELKEQGNRLFV-------GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQALADCRRALELDGQS 71 (281)
T ss_dssp CHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSCTTC
T ss_pred hHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCC
Confidence 45667788888775 589999999999954 56899999999999999 9999999999999987 688
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhh
Q 005877 160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNS 193 (672)
Q Consensus 160 ~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~ 193 (672)
+.+++.+|.+|...|++++|+.+|+++++..|..
T Consensus 72 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 72 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999999999999987753
No 136
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.88 E-value=2.3e-08 Score=106.62 Aligned_cols=210 Identities=12% Similarity=0.066 Sum_probs=152.8
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHH
Q 005877 159 NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ 238 (672)
Q Consensus 159 ~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~ 238 (672)
.|.+.+.-|..+...|++++|++.|.++++..+...... ...+........
T Consensus 3 ~p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~-----------------------~~~~~~~~~~~~------ 53 (434)
T 4b4t_Q 3 LPGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAA-----------------------AGASVDDKRRNE------ 53 (434)
T ss_dssp STTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBS-----------------------SSSSBCSHHHHH------
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhH-----------------------HHHHHHHHHhhh------
Confidence 355677778888889999999999999987543211100 000011111111
Q ss_pred cCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH
Q 005877 239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----GE----PQSMEFLGEIYARGAGVERNYTKALEWLTHAA 310 (672)
Q Consensus 239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 310 (672)
...+...||.+|... +++++|+++|+++.+. +. ......+|.++.. ++++++|+.++++++
T Consensus 54 --~~~al~~l~~~y~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~ 122 (434)
T 4b4t_Q 54 --QETSILELGQLYVTM-----GAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQV----PDSLDDQIFVCEKSI 122 (434)
T ss_dssp --HHHHHHHHHHHHHHH-----TCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSC----CSCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHH
Confidence 234567889999887 4999999999988762 22 2345667888777 889999999999987
Q ss_pred Hc--------CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHcCCCchhcHHH
Q 005877 311 RQ--------QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--------EEAGGHYNLGVMYYKGIGVKRDVKL 374 (672)
Q Consensus 311 ~~--------~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~g~~~~~~~ 374 (672)
+. ....+...||.+|.. .|++++|+.+++++... ....++..+|.+|.. .+|+++
T Consensus 123 ~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 193 (434)
T 4b4t_Q 123 EFAKREKRVFLKHSLSIKLATLHYQ-----KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK----LRNLAK 193 (434)
T ss_dssp HHHHHSSCCSSHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH----TTCHHH
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHH-----ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH----hCcHHH
Confidence 53 235678899999986 67999999999988653 236788999999999 999999
Q ss_pred HHHHHHHHHHc----C-C----HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHc
Q 005877 375 ACKYFLVAANA----G-H----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER 421 (672)
Q Consensus 375 A~~~~~~A~~~----~-~----~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~ 421 (672)
|..+|+++... . + ...+..+|.++.. .+++++|..+|.++.+.
T Consensus 194 A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 194 SKASLTAARTAANSIYCPTQTVAELDLMSGILHCE----DKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS----SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHH
Confidence 99999998752 2 2 2455677777776 89999999999998764
No 137
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.87 E-value=5.8e-08 Score=84.02 Aligned_cols=94 Identities=16% Similarity=0.080 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHH
Q 005877 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL 427 (672)
Q Consensus 352 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~ 427 (672)
+..++.+|..+.. .+++++|+.+|+++++. .++.+++++|.+|.. .+++++|+..|+++++..| +.++
T Consensus 4 a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~ 75 (126)
T 3upv_A 4 AEEARLEGKEYFT----KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK----LMSFPEAIADCNKAIEKDPNFVRAY 75 (126)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCcHHHH
Confidence 4556667777766 67777777777777653 356777777777776 6777777777777776653 4566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 428 SRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 428 ~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
+.+|.++...|++++|+..|+++++.
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 77777777777777777777777544
No 138
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.86 E-value=2.8e-08 Score=86.02 Aligned_cols=95 Identities=11% Similarity=-0.062 Sum_probs=68.9
Q ss_pred hHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCC
Q 005877 124 PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSP 201 (672)
Q Consensus 124 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~ 201 (672)
+..+..+|..+.. .+++++|+.+|++++. ++++.++..+|.+|...|++++|+..|+++++.
T Consensus 4 a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------------ 67 (126)
T 3upv_A 4 AEEARLEGKEYFT----KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------------ 67 (126)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------------
Confidence 4566777777777 7777888888877765 567777777787777777777777777777653
Q ss_pred cccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH
Q 005877 202 VIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD 275 (672)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~ 275 (672)
++.++.+++.+|.++... +++++|+.+|+++++
T Consensus 68 ------------------------------------~p~~~~~~~~lg~~~~~~-----~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 68 ------------------------------------DPNFVRAYIRKATAQIAV-----KEYASALETLDAART 100 (126)
T ss_dssp ------------------------------------CTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHH
T ss_pred ------------------------------------CCCcHHHHHHHHHHHHHH-----hCHHHHHHHHHHHHH
Confidence 334667777777777766 377777777777765
No 139
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.85 E-value=3.1e-05 Score=86.70 Aligned_cols=192 Identities=8% Similarity=-0.028 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHH-HHHHHHHHcCChhHHH--HHHHHHHhcCCHHHHHHH
Q 005877 372 VKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMAT-ALYKLVAERGPWSSLS--RWALESYLKGDVGKAFLL 446 (672)
Q Consensus 372 ~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~-~~~~~a~~~~~~~a~~--~lg~~~~~~g~~~~A~~~ 446 (672)
.+.....|++++.. ..+..++..+..... .++.++|. ..|++|+...|..... .++......|++++|...
T Consensus 325 ~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~----~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~i 400 (679)
T 4e6h_A 325 KARMTYVYMQAAQHVCFAPEIWFNMANYQGE----KNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETT 400 (679)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----HSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34566789999874 578999999988876 67778997 9999999988766544 456667788999999999
Q ss_pred HHHHHHcC------------------------CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhC-
Q 005877 447 YSRMAELG------------------------YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ- 501 (672)
Q Consensus 447 ~~~a~~~g------------------------~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~- 501 (672)
|+++++.. ....+..++.+..+ .++.+.|..++.+|.+.
T Consensus 401 yek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR----------------~~~l~~AR~vf~~A~~~~ 464 (679)
T 4e6h_A 401 ILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR----------------IQGLAASRKIFGKCRRLK 464 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH----------------HHCHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHhc
Confidence 99998641 11123334444333 56789999999999876
Q ss_pred C--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877 502 G--NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA 577 (672)
Q Consensus 502 ~--~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 577 (672)
. ....+...+.+-+. ..+|+++|...|+++++. .++..+...+.+... .++.++|+.+|++|+...|+.
T Consensus 465 ~~~~~~lyi~~A~lE~~---~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~----~~~~~~AR~lferal~~~~~~ 537 (679)
T 4e6h_A 465 KLVTPDIYLENAYIEYH---ISKDTKTACKVLELGLKYFATDGEYINKYLDFLIY----VNEESQVKSLFESSIDKISDS 537 (679)
T ss_dssp GGSCTHHHHHHHHHHHT---TTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHTTTSSST
T ss_pred CCCChHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhcCCH
Confidence 3 35566666766652 246799999999999984 666666555655444 689999999999999988752
Q ss_pred cchhHHHHHHHHHHH
Q 005877 578 KLPVTLALTSLWIRK 592 (672)
Q Consensus 578 ~~~~~~~~~~~~~~~ 592 (672)
. ....++..|++.
T Consensus 538 ~--~~~~lw~~~~~f 550 (679)
T 4e6h_A 538 H--LLKMIFQKVIFF 550 (679)
T ss_dssp T--HHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHH
Confidence 1 223344444443
No 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.85 E-value=4.3e-08 Score=85.07 Aligned_cols=63 Identities=13% Similarity=-0.123 Sum_probs=41.1
Q ss_pred CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 005877 122 GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAE 188 (672)
Q Consensus 122 ~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~ 188 (672)
.++.+++.+|.+|.. .+++++|+.+|+++++ +.+..+++.+|.+|...+++++|+.+|+++++
T Consensus 14 ~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 78 (133)
T 2lni_A 14 DLALMVKNKGNECFQ----KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ 78 (133)
T ss_dssp CHHHHHHHHHHHHHH----TTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345666666666666 6666777777766665 35566666666666666666666666666654
No 141
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.85 E-value=1.5e-08 Score=90.13 Aligned_cols=102 Identities=12% Similarity=-0.006 Sum_probs=91.7
Q ss_pred CCCCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHH--HhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh-
Q 005877 80 IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE- 156 (672)
Q Consensus 80 ~~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a--~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~- 156 (672)
.+|+++.+++.+|..++. .+++++|+..|+++ .++.++.+++.+|.+|.. .+++++|+.+|++++.
T Consensus 13 ~~p~~~~~~~~~a~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~ 81 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQ-------AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS----LGLYEQALQSYSYGALM 81 (142)
T ss_dssp CCHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH-------HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhc
Confidence 445667788889988875 58999999999995 567899999999999999 9999999999999986
Q ss_pred -CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Q 005877 157 -GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVN 192 (672)
Q Consensus 157 -~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~ 192 (672)
++++.+++.+|.+|...|++++|+.+|+++++..|.
T Consensus 82 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 82 DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 789999999999999999999999999999998764
No 142
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.84 E-value=5.6e-08 Score=88.55 Aligned_cols=101 Identities=21% Similarity=0.173 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCH
Q 005877 425 SSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNE 504 (672)
Q Consensus 425 ~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 504 (672)
..++.+|..++..|++++|+.+|+++++. .+.++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------------------------------------~p~~~ 45 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI----------------------------------------------APANP 45 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------------------------STTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------------------------------CCcCH
Confidence 34566677777777777777777766553 34567
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcc
Q 005877 505 HAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKL 579 (672)
Q Consensus 505 ~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~ 579 (672)
.+++++|.+|. ..+++++|+.+|+++++ .+++.+++++|.+|.. .+++++|+.+|+++++++|+...
T Consensus 46 ~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 46 IYLSNRAAAYS----ASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD----MADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHHHHHHH----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHH----HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCchH
Confidence 78888999998 88999999999999977 4789999999999987 89999999999999999887653
No 143
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.81 E-value=5.3e-08 Score=83.95 Aligned_cols=62 Identities=16% Similarity=-0.073 Sum_probs=38.3
Q ss_pred ChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 005877 123 DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAE 188 (672)
Q Consensus 123 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~ 188 (672)
++.+++.+|.++.. .+++++|+.+|++++. +.++.++..+|.++...+++++|+.+|+++++
T Consensus 11 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 74 (131)
T 2vyi_A 11 EAERLKTEGNEQMK----VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC 74 (131)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh
Confidence 34555666666665 6666666666666654 45566666666666666666666666666544
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.81 E-value=3.8e-08 Score=90.81 Aligned_cols=79 Identities=15% Similarity=0.178 Sum_probs=38.5
Q ss_pred hhhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHH-HhccCCH--H
Q 005877 105 VRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYT-YLRQDMH--D 177 (672)
Q Consensus 105 ~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~-y~~~~~~--~ 177 (672)
.+++++|+..++++. ++.++.+++.+|.+|.. .+++++|+.+|++++. +.++.++..+|.+ +...+++ +
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLW----QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 455555555555532 33455555555555555 5555555555555543 3455555555555 4444444 5
Q ss_pred HHHHHHHHHH
Q 005877 178 KAVKLYAELA 187 (672)
Q Consensus 178 ~A~~~y~~a~ 187 (672)
+|+.+|++++
T Consensus 99 ~A~~~~~~al 108 (177)
T 2e2e_A 99 QTRAMIDKAL 108 (177)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 145
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.80 E-value=9.7e-08 Score=82.77 Aligned_cols=80 Identities=19% Similarity=0.194 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHH
Q 005877 335 NYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHM 410 (672)
Q Consensus 335 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~ 410 (672)
++++|+.+|+++++. +++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++++|.++.. .+++++
T Consensus 31 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~~~~~~ 102 (133)
T 2lni_A 31 DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK----LLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA----MKDYTK 102 (133)
T ss_dssp CSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHH
T ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----HhhHHH
Confidence 444444444444433 234444444444444 44444444444444432 234444444444443 444444
Q ss_pred HHHHHHHHHHcC
Q 005877 411 ATALYKLVAERG 422 (672)
Q Consensus 411 A~~~~~~a~~~~ 422 (672)
|+.+|+++++..
T Consensus 103 A~~~~~~~~~~~ 114 (133)
T 2lni_A 103 AMDVYQKALDLD 114 (133)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 444444444433
No 146
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.80 E-value=2.6e-08 Score=85.84 Aligned_cols=97 Identities=18% Similarity=0.078 Sum_probs=73.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHH
Q 005877 427 LSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHA 506 (672)
Q Consensus 427 ~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a 506 (672)
.+.+|..+...|++++|+..|+++++. .++++.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~----------------------------------------------~P~~~~a 53 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK----------------------------------------------EPEREEA 53 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------------------------STTCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH----------------------------------------------CCCCHHH
Confidence 456666666677777777666666553 4567778
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877 507 ALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA 577 (672)
Q Consensus 507 ~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 577 (672)
++.+|.++. ..+++++|+.+|++|++ ++++.++++||.+|.. .|++++|+.+|+++++.+|+.
T Consensus 54 ~~~lg~~~~----~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 54 WRSLGLTQA----ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN----EHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHH----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCC
Confidence 888888888 78899999999999876 4788899999999887 789999999999999988763
No 147
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.80 E-value=3.3e-08 Score=87.77 Aligned_cols=104 Identities=16% Similarity=-0.018 Sum_probs=78.1
Q ss_pred HHHHHHhCC--CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHH
Q 005877 342 YFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKL 417 (672)
Q Consensus 342 ~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~ 417 (672)
.|+++++.+ ++.+++.+|..+.. .+++++|+.+|+++++. .++.+++.+|.++.. .+++++|+.+|++
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~ 77 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQ----AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS----LGLYEQALQSYSY 77 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHH----HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----HhhHHHHHHHHHH
Confidence 344444443 56677788888887 78888888888888763 467888888888887 7888888888888
Q ss_pred HHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 418 VAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 418 a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
+++..| +.+++.+|.++...|++++|+.+|+++++.
T Consensus 78 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 78 GALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 887763 567788888888888888888888888654
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.80 E-value=1.2e-08 Score=96.40 Aligned_cols=121 Identities=16% Similarity=0.065 Sum_probs=81.6
Q ss_pred CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC--CCH----------------HHHHHHHHHHhccCCHHHHHHHH
Q 005877 122 GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNI----------------QSKMAVAYTYLRQDMHDKAVKLY 183 (672)
Q Consensus 122 ~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~----------------~a~~~Lg~~y~~~~~~~~A~~~y 183 (672)
..+..+..+|..+.. .+++++|+.+|++++.. .++ .++..+|.+|...+++++|+.+|
T Consensus 36 ~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 111 (198)
T 2fbn_A 36 QSAFDIKEEGNEFFK----KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA 111 (198)
T ss_dssp HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 344566677777776 77777888888777762 333 56666777777777777777777
Q ss_pred HHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCH
Q 005877 184 AELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDR 263 (672)
Q Consensus 184 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~ 263 (672)
+++++. ++.++.+++.+|.+|... +++
T Consensus 112 ~~al~~------------------------------------------------~p~~~~~~~~lg~~~~~~-----~~~ 138 (198)
T 2fbn_A 112 SKVLKI------------------------------------------------DKNNVKALYKLGVANMYF-----GFL 138 (198)
T ss_dssp HHHHHH------------------------------------------------STTCHHHHHHHHHHHHHH-----TCH
T ss_pred HHHHHh------------------------------------------------CcccHHHHHHHHHHHHHc-----ccH
Confidence 666552 334677778888887776 478
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHH
Q 005877 264 TKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKAL 303 (672)
Q Consensus 264 ~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 303 (672)
++|+.+|+++++ ++++.+...++.++.. .++..++.
T Consensus 139 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~~~ 176 (198)
T 2fbn_A 139 EEAKENLYKAASLNPNNLDIRNSYELCVNK----LKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----HHHHHC--
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHH----HHHHHHHH
Confidence 888888888765 3577777777777766 55555444
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.79 E-value=9.1e-09 Score=97.16 Aligned_cols=136 Identities=17% Similarity=0.050 Sum_probs=81.0
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCH----------------HHH
Q 005877 296 ERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEA----------------GGH 355 (672)
Q Consensus 296 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~----------------~a~ 355 (672)
.++++++.+.+....+. ..+..+..+|..+.. .+++++|+.+|+++++. .++ .++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFK-----KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 44555554444433321 234455666666654 45666666666666654 222 667
Q ss_pred HHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHH
Q 005877 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWA 431 (672)
Q Consensus 356 ~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg 431 (672)
+++|.+|.. .+++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++++..| ..+...++
T Consensus 92 ~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 163 (198)
T 2fbn_A 92 LNLATCYNK----NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY----FGFLEEAKENLYKAASLNPNNLDIRNSYE 163 (198)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHH----hcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 777777777 77777777777777663 456777777777776 7777777777777776653 44566666
Q ss_pred HHHHhcCCHHHHH
Q 005877 432 LESYLKGDVGKAF 444 (672)
Q Consensus 432 ~~~~~~g~~~~A~ 444 (672)
.++...++..++.
T Consensus 164 ~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 164 LCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHH
Confidence 6666555555444
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.77 E-value=1e-07 Score=86.79 Aligned_cols=94 Identities=15% Similarity=0.089 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHH
Q 005877 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL 427 (672)
Q Consensus 352 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~ 427 (672)
+.+++.+|.++.. .+++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++++..+ +.++
T Consensus 11 a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 82 (164)
T 3sz7_A 11 SDKLKSEGNAAMA----RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA----SGQHEKAAEDAELATVVDPKYSKAW 82 (164)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 4455566666666 66666666666666553 355666666666665 6666666666666666553 4456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 428 SRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 428 ~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
+.+|.++...|++++|+.+|+++++.
T Consensus 83 ~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 83 SRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 66666666666666666666666443
No 151
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.77 E-value=3.2e-07 Score=91.64 Aligned_cols=174 Identities=11% Similarity=0.012 Sum_probs=104.9
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCccCCHHHHH
Q 005877 339 AKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GHQKAFYQLAKMFHTGVGLKKNLHMAT 412 (672)
Q Consensus 339 A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~~~a~~~L~~~y~~g~g~~~~~~~A~ 412 (672)
|+.+|++.++. ..+.+.+.+|.++.. .+++++|++++.+.+.. ++.++...++.++.. .++.++|.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~----~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~----~~r~d~A~ 156 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAI----LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL----NNNVSTAS 156 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH----TTCHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH----CCCHHHHH
Confidence 55666665543 345555666666666 66666666666666554 345566666666665 56666666
Q ss_pred HHHHHHHHcCC------hhHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCc
Q 005877 413 ALYKLVAERGP------WSSLSRWALE--SYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTD 484 (672)
Q Consensus 413 ~~~~~a~~~~~------~~a~~~lg~~--~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~ 484 (672)
..+++..+..+ ......++.. ....|
T Consensus 157 k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g---------------------------------------------- 190 (310)
T 3mv2_B 157 TIFDNYTNAIEDTVSGDNEMILNLAESYIKFATN---------------------------------------------- 190 (310)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHT----------------------------------------------
T ss_pred HHHHHHHhcCccccccchHHHHHHHHHHHHHHhC----------------------------------------------
Confidence 66666555544 2233333322 22222
Q ss_pred hHhHHHHHHHHHHHHhCCC----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHH
Q 005877 485 AERHQCAHSLWWQASEQGN----EHAALLIGDAYYYGRGTQRDYERAAEAYMHARS------------QSNAQAMFNLGY 548 (672)
Q Consensus 485 ~~~~~~A~~~~~~a~~~~~----~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~------------~~~~~a~~~Lg~ 548 (672)
.+++.+|...|+...+..+ +..+++ ++. ..+++++|...+++..+ ++++.++.|+..
T Consensus 191 ~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~----~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~ 263 (310)
T 3mv2_B 191 KETATSNFYYYEELSQTFPTWKTQLGLLN---LHL----QQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQIT 263 (310)
T ss_dssp CSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHH----HHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCcccHHHHHH---HHH----HcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHH
Confidence 1134445555554433322 223334 566 67899999999886543 568899988877
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHHhcCCCCcc
Q 005877 549 MHEHGQGLPLDLHLAKRYYDQALEVDPAAKL 579 (672)
Q Consensus 549 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~ 579 (672)
+..+ .|+ .|.+++.++.+.+|+...
T Consensus 264 l~~~----lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 264 LALM----QGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HHHH----TTC--TTHHHHHHHHHTTCCCHH
T ss_pred HHHH----hCh--HHHHHHHHHHHhCCCChH
Confidence 7665 444 888999999999988754
No 152
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.77 E-value=6.8e-08 Score=86.69 Aligned_cols=91 Identities=23% Similarity=0.272 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--
Q 005877 280 QSMEFLGEIYARGAGVERNYTKALEWLTHAARQ----QL----YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-- 349 (672)
Q Consensus 280 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~-- 349 (672)
.++..+|.+|.. .+++++|+.+++++++. ++ ..++..+|.+|.. .+++++|+.+++++++.
T Consensus 10 ~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~a~~~~~ 80 (164)
T 3ro3_A 10 RAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF-----LGEFETASEYYKKTLLLAR 80 (164)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHH
Confidence 345566666665 66666666666666543 11 1244555555553 34555555555555432
Q ss_pred --CC----HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHH
Q 005877 350 --EE----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAA 383 (672)
Q Consensus 350 --~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~ 383 (672)
++ ..++.++|.++.. .+++++|+.++++++
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 81 QLKDRAVEAQSCYSLGNTYTL----LQDYEKAIDYHLKHL 116 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHH
Confidence 11 2344444555544 445555555554443
No 153
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.77 E-value=7.1e-08 Score=86.54 Aligned_cols=126 Identities=13% Similarity=0.069 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc-
Q 005877 315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA- 385 (672)
Q Consensus 315 ~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~- 385 (672)
..++..+|.+|.. .+++++|+.+++++++. ++ ..++.++|.+|.. .+++++|+.+|+++++.
T Consensus 9 ~~~~~~l~~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~ 79 (164)
T 3ro3_A 9 GRAFGNLGNTHYL-----LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF----LGEFETASEYYKKTLLLA 79 (164)
T ss_dssp HHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Confidence 4567889999986 57999999999999875 22 3588999999999 99999999999999763
Q ss_pred ---CC----HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC----C----hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005877 386 ---GH----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----P----WSSLSRWALESYLKGDVGKAFLLYSRM 450 (672)
Q Consensus 386 ---~~----~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~----~----~~a~~~lg~~~~~~g~~~~A~~~~~~a 450 (672)
++ ..++.++|.++.. .+++++|+.+++++++.. + ..++..+|.++...|++++|+.+++++
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 80 RQLKDRAVEAQSCYSLGNTYTL----LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 22 5678999999998 899999999999998653 2 346788999999999999999999999
Q ss_pred HHc
Q 005877 451 AEL 453 (672)
Q Consensus 451 ~~~ 453 (672)
++.
T Consensus 156 ~~~ 158 (164)
T 3ro3_A 156 LEI 158 (164)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 154
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.76 E-value=5.4e-05 Score=84.70 Aligned_cols=420 Identities=7% Similarity=-0.046 Sum_probs=251.9
Q ss_pred HHHHHHH--HHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCC---HHHHHHHH
Q 005877 111 ATSEVES--AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDM---HDKAVKLY 183 (672)
Q Consensus 111 A~~~~~~--a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~---~~~A~~~y 183 (672)
-+..|++ ..++.+...+..+...... .++...+...|++++. +............-...++ ++++...|
T Consensus 51 ~i~~lE~~l~~np~d~~~W~~yi~~~~~----~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 51 VIGKLNDMIEEQPTDIFLYVKLLKHHVS----LKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 3444555 3456888899888888776 6789999999999887 6777888777777777788 99999999
Q ss_pred HHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCC--------hHHHHHHHHHHHHc-C-----CHHHHHHHH
Q 005877 184 AELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGE--------DDEAFQILEYQAQK-G-----NAGAMYKIG 249 (672)
Q Consensus 184 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~--------~~~Ai~~~~~aa~~-~-----~~~a~~~Lg 249 (672)
++++...+ ..|.+. + +.. .+..+. ..++ .+...+.|+.+.+. | ....+....
T Consensus 127 eRal~~~~-------~~~sv~---L--W~~-Yl~f~~-~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi 192 (679)
T 4e6h_A 127 ARCLSKEL-------GNNDLS---L--WLS-YITYVR-KKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYL 192 (679)
T ss_dssp HHHTCSSS-------CCCCHH---H--HHH-HHHHHH-HHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHH
T ss_pred HHHHHhcC-------CCCCHH---H--HHH-HHHHHH-HhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 99876320 001000 0 000 000000 1111 12344677776643 2 334433333
Q ss_pred HHHHhcCCC----cccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcC--CC--------CcCCHHHHHHHHHHHH---
Q 005877 250 LFYYFGLRG----LRRDRTKALMWFSKAADKG--EPQSMEFLGEIYARG--AG--------VERNYTKALEWLTHAA--- 310 (672)
Q Consensus 250 ~~y~~~~~~----~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g--~g--------~~~~~~~A~~~~~~a~--- 310 (672)
......... ..++.+.+...|++++... +..-.+..-.-+..+ .. ...+|..|..+|+..-
T Consensus 193 ~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~ 272 (679)
T 4e6h_A 193 HFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNIT 272 (679)
T ss_dssp HHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 332211000 0135678888999988632 111111100111110 00 0234555555554421
Q ss_pred ---HcC-------------------C-HHHHHHHHHHHH-cCC--CCCc-CCHHHHHHHHHHHHhC--CCHHHHHHHHHH
Q 005877 311 ---RQQ-------------------L-YSAYNGIGYLYV-KGY--GVEK-KNYTKAKEYFEKAADN--EEAGGHYNLGVM 361 (672)
Q Consensus 311 ---~~~-------------------~-~~a~~~Lg~~y~-~g~--g~~~-~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~ 361 (672)
+.. . .........+-+ ... +.+. ...+.....|++++.. .+++.++..+..
T Consensus 273 ~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~ 352 (679)
T 4e6h_A 273 KGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANY 352 (679)
T ss_dssp TTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 110 0 111111222211 111 1100 0123456789999875 589999999999
Q ss_pred HHcCCCchhcHHHHH-HHHHHHHHcC--CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC-----------Ch---
Q 005877 362 YYKGIGVKRDVKLAC-KYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG-----------PW--- 424 (672)
Q Consensus 362 y~~g~g~~~~~~~A~-~~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~-----------~~--- 424 (672)
... .++.++|. ..|++|+... +...+..++.+.+. .++.++|...|+++++.. |.
T Consensus 353 ~~~----~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~----~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~ 424 (679)
T 4e6h_A 353 QGE----KNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYEL----NTKIPEIETTILSCIDRIHLDLAALMEDDPTNES 424 (679)
T ss_dssp HHH----HSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHh----cCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Confidence 888 77888997 9999998843 45566777788876 789999999999998742 21
Q ss_pred --------h--HHHHHHHHHHhcCCHHHHHHHHHHHHHc-C--CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHH
Q 005877 425 --------S--SLSRWALESYLKGDVGKAFLLYSRMAEL-G--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCA 491 (672)
Q Consensus 425 --------~--a~~~lg~~~~~~g~~~~A~~~~~~a~~~-g--~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A 491 (672)
. .+...+......|+.+.|...|.+|++. . ........|.+-.+. .++.++|
T Consensus 425 ~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~---------------~~d~e~A 489 (679)
T 4e6h_A 425 AINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI---------------SKDTKTA 489 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT---------------TSCCHHH
T ss_pred hhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh---------------CCCHHHH
Confidence 1 2333444445678999999999999876 3 233333444443321 2347899
Q ss_pred HHHHHHHHh--CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHcCCCCCCCHHHHHH
Q 005877 492 HSLWWQASE--QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSN----AQAMFNLGYMHEHGQGLPLDLHLAKR 565 (672)
Q Consensus 492 ~~~~~~a~~--~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~~----~~a~~~Lg~~y~~g~g~~~d~~~A~~ 565 (672)
.++|+++++ +.++..+..++.+.. ..++.++|..+|++|+.... ...++..=.-++. .-|+.+.+..
T Consensus 490 r~ife~~Lk~~p~~~~~w~~y~~fe~----~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~---~~G~~~~~~~ 562 (679)
T 4e6h_A 490 CKVLELGLKYFATDGEYINKYLDFLI----YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFES---KVGSLNSVRT 562 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH----HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHH---HTCCSHHHHH
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHH----hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---HcCCHHHHHH
Confidence 999998766 456777777888776 67899999999999998533 3334433333443 2578999999
Q ss_pred HHHHHHhcCCCCc
Q 005877 566 YYDQALEVDPAAK 578 (672)
Q Consensus 566 ~~~~A~~~~~~~~ 578 (672)
.++++.+..|+..
T Consensus 563 v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 563 LEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHSTTCC
T ss_pred HHHHHHHhCCCCc
Confidence 9999999998853
No 155
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.74 E-value=1.4e-08 Score=109.43 Aligned_cols=137 Identities=13% Similarity=0.064 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHHH--HhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCC---------------HHHHHHH
Q 005877 106 RVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGN---------------IQSKMAV 166 (672)
Q Consensus 106 ~~~~~A~~~~~~a--~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~---------------~~a~~~L 166 (672)
+++++|+..|+++ ..+.++.++..+|..|.. .+++++|+.+|++|+. +.+ ..+++++
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~----~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl 323 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFK----GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNL 323 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHH
Confidence 3445555555552 233556667777777776 6677777777777665 344 4555666
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHH
Q 005877 167 AYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMY 246 (672)
Q Consensus 167 g~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~ 246 (672)
|.+|...+++++|+.+|+++++. ++.++.+++
T Consensus 324 a~~~~~~g~~~~A~~~~~~al~~------------------------------------------------~p~~~~a~~ 355 (457)
T 1kt0_A 324 AMCYLKLREYTKAVECCDKALGL------------------------------------------------DSANEKGLY 355 (457)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH------------------------------------------------STTCHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhc------------------------------------------------CCccHHHHH
Confidence 66666666666666666655442 234566677
Q ss_pred HHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHH
Q 005877 247 KIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKAL 303 (672)
Q Consensus 247 ~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 303 (672)
.+|.+|... +++++|+.+|+++++. +++.++..++.++.. .++++++.
T Consensus 356 ~~g~a~~~~-----g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~----~~~~~~a~ 405 (457)
T 1kt0_A 356 RRGEAQLLM-----NEFESAKGDFEKVLEVNPQNKAARLQISMCQKK----AKEHNERD 405 (457)
T ss_dssp HHHHHHHHT-----TCHHHHHHHHHHHHTTC----CHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHc-----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HHHHHHHH
Confidence 777777666 3777777777777653 456666667776666 56655554
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.74 E-value=2.8e-07 Score=77.75 Aligned_cols=110 Identities=13% Similarity=-0.035 Sum_probs=83.0
Q ss_pred ChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCC
Q 005877 123 DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDS 200 (672)
Q Consensus 123 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~ 200 (672)
.+.+++.+|.++.. .+++++|+.+|++++. ++++.++..+|.++...+++++|+.+++++++.
T Consensus 3 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------- 67 (118)
T 1elw_A 3 QVNELKEKGNKALS----VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL----------- 67 (118)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------
T ss_pred hHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-----------
Confidence 35677788888887 7888888888888765 577888888888888888888888888887653
Q ss_pred CcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CC
Q 005877 201 PVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GE 278 (672)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~ 278 (672)
.+.++.+++.+|.++... +++++|+.+|+++++. ++
T Consensus 68 -------------------------------------~~~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~~~~ 105 (118)
T 1elw_A 68 -------------------------------------KPDWGKGYSRKAAALEFL-----NRFEEAKRTYEEGLKHEANN 105 (118)
T ss_dssp -------------------------------------CTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHTTCTTC
T ss_pred -------------------------------------CcccHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHcCCCC
Confidence 234667777888887776 3888888888887764 56
Q ss_pred HHHHHHHHHHH
Q 005877 279 PQSMEFLGEIY 289 (672)
Q Consensus 279 ~~a~~~Lg~~y 289 (672)
+.+...++.+.
T Consensus 106 ~~~~~~l~~~~ 116 (118)
T 1elw_A 106 PQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 67777766654
No 157
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.74 E-value=5.1e-08 Score=87.02 Aligned_cols=111 Identities=11% Similarity=0.012 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCH
Q 005877 425 SSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNE 504 (672)
Q Consensus 425 ~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 504 (672)
..+.+.|..++..|++++|+..|++|++....... . +++. ..+.++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~-------------------------~----~a~~-----~~~~~a 57 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPP-------------------------E----EAFD-----HAGFDA 57 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCT-------------------------T----SCCC-----HHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcc-------------------------h----hhhh-----hccchH
Confidence 45677888899999999999999999775422000 0 0000 011124
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc---------CCHHHH----HHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 005877 505 HAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ---------SNAQAM----FNLGYMHEHGQGLPLDLHLAKRYYDQAL 571 (672)
Q Consensus 505 ~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~---------~~~~a~----~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 571 (672)
.+++++|.++. ..+++++|+.+|.+|++. +++.++ +++|.++.. .+++++|+..|++|+
T Consensus 58 ~a~~n~g~al~----~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~----lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 58 FCHAGLAEALA----GLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDG----LGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHH----CCCHHHHHHHHHHHH
Confidence 48889999999 889999999999999755 678899 999999988 899999999999999
Q ss_pred hcCCCC
Q 005877 572 EVDPAA 577 (672)
Q Consensus 572 ~~~~~~ 577 (672)
+++|+.
T Consensus 130 el~p~d 135 (159)
T 2hr2_A 130 EMIEER 135 (159)
T ss_dssp HHHHHC
T ss_pred hcCCCc
Confidence 998764
No 158
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.74 E-value=3.5e-07 Score=77.91 Aligned_cols=61 Identities=25% Similarity=0.274 Sum_probs=36.3
Q ss_pred hHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 005877 124 PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAE 188 (672)
Q Consensus 124 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~ 188 (672)
+.+++.+|.+|.. .+++++|+.+|++++. ++++.++..+|.++...+++++|+.+|+++++
T Consensus 9 ~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 71 (125)
T 1na0_A 9 AEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (125)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4555566666655 5566666666666554 34556666666666666666666666655544
No 159
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.72 E-value=1.1e-07 Score=86.46 Aligned_cols=119 Identities=17% Similarity=0.156 Sum_probs=92.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC
Q 005877 424 WSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN 503 (672)
Q Consensus 424 ~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 503 (672)
...+...|..++..|++++|+..|.++++.-..... . .. ..+.+ .....+.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~--------~-----------~~---~~~~~------~~~~~~~~ 62 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLIL--------R-----------EK---PGEPE------WVELDRKN 62 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH--------T-----------SC---TTSHH------HHHHHHTH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc--------c-----------CC---CCHHH------HHHHHHHH
Confidence 346778899999999999999999999775111000 0 00 00000 01234566
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877 504 EHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK 578 (672)
Q Consensus 504 ~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 578 (672)
..+++++|.+|. ..+++++|+.+++++++ +.++.+++++|.+|.. .|++++|+.+|++|++++|+..
T Consensus 63 ~~~~~nla~~~~----~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~----~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYL----NIGDLHEAEETSSEVLKREETNEKALFRRAKARIA----AWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHH----hcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH----HhcHHHHHHHHHHHHhcCCCCH
Confidence 788999999999 89999999999999977 4789999999999988 8999999999999999999864
No 160
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.71 E-value=1.7e-05 Score=80.34 Aligned_cols=226 Identities=8% Similarity=-0.034 Sum_probs=174.9
Q ss_pred ccCCh-HHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCc-----ccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHc
Q 005877 222 SRGED-DEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGL-----RRDRTKALMWFSKAAD--KGEPQSMEFLGEIYAR 291 (672)
Q Consensus 222 ~~g~~-~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~-----~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~ 291 (672)
..|++ ++|+..+.+++.. .+..+...-+.++...+... ...+++++.++.+++. +.+..+++.-+.++..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 34444 4799999998655 58999999998887653110 0127889999999987 4789999999999987
Q ss_pred CCCCcC--CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCC-HHHHHHHHHHHHhC--CCHHHHHHHHHHHHc
Q 005877 292 GAGVER--NYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKN-YTKAKEYFEKAADN--EEAGGHYNLGVMYYK 364 (672)
Q Consensus 292 g~g~~~--~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~-~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~ 364 (672)
.+ ++++++.++.++++.+ +..+++.-+.+... .+. ++++++++.++++. .+..|+.+.+.+...
T Consensus 121 ----l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~-----l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 121 ----LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ-----AAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 191 (331)
T ss_dssp ----CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred ----cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----hCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 45 5899999999999864 88899988888875 234 68999999999886 589999999988765
Q ss_pred CC----------CchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCcc-------CCHHHHHHHHHHHHHcCChh
Q 005877 365 GI----------GVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLK-------KNLHMATALYKLVAERGPWS 425 (672)
Q Consensus 365 g~----------g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~-------~~~~~A~~~~~~a~~~~~~~ 425 (672)
-. ...+.++++++++.+++. +++..+++++..++..+.|.. +-+++++++++++++..|..
T Consensus 192 l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 192 LHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp HSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred hhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 10 012678999999999986 668999999988888865532 45889999999999999876
Q ss_pred HHHHHHHHHH-----hcCCHHHHHHHHHHHHHcCCH
Q 005877 426 SLSRWALESY-----LKGDVGKAFLLYSRMAELGYE 456 (672)
Q Consensus 426 a~~~lg~~~~-----~~g~~~~A~~~~~~a~~~g~~ 456 (672)
.+..++.+.+ ..|..++...++.+..+.+..
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 6555554432 357788999999999877643
No 161
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.71 E-value=8.4e-08 Score=82.64 Aligned_cols=96 Identities=15% Similarity=0.089 Sum_probs=84.1
Q ss_pred CchHHHHHHHHHHHhcCCChhhHHHHHHHHHHH--HhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHH
Q 005877 86 NGSYYITISKMMSAVTNGDVRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQ 161 (672)
Q Consensus 86 ~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a--~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~ 161 (672)
...+.+|..++. .+++++|+..|+++ .+++++.+++.+|.+|.. .+++++|+.+|++++. ++++.
T Consensus 18 ~~~~~~g~~~~~-------~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~ 86 (121)
T 1hxi_A 18 ENPMEEGLSMLK-------LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE----NEKDGLAIIALNHARMLDPKDIA 86 (121)
T ss_dssp SCHHHHHHHHHH-------TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhHHHHHHHHHH-------cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHH
Confidence 457888888775 58999999999995 467899999999999999 9999999999999987 78999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Q 005877 162 SKMAVAYTYLRQDMHDKAVKLYAELAEIAVN 192 (672)
Q Consensus 162 a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~ 192 (672)
+++.||.+|...|++++|+.+|+++++..|.
T Consensus 87 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 87 VHAALAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 9999999999999999999999999886553
No 162
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.70 E-value=5.5e-07 Score=77.42 Aligned_cols=109 Identities=18% Similarity=0.074 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHH
Q 005877 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL 427 (672)
Q Consensus 352 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~ 427 (672)
+.+++.+|.++.. .+++++|+.+|+++++. .++.+++.+|.++.. .+++++|+.+++++++..+ +.++
T Consensus 12 ~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 83 (131)
T 2vyi_A 12 AERLKTEGNEQMK----VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK----LGNYAGAVQDCERAICIDPAYSKAY 83 (131)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hhchHHHHHHHHHHHhcCccCHHHH
Confidence 3445555656555 55666666666665542 345556666666655 5666666666666655542 3455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Q 005877 428 SRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDK 468 (672)
Q Consensus 428 ~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~ 468 (672)
..+|.++...|++++|+.+|+++++. ++..+..+++.++..
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 56666666666666666666666544 355556666665544
No 163
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.69 E-value=1.6e-07 Score=81.19 Aligned_cols=66 Identities=20% Similarity=0.337 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877 505 HAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SN---AQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK 578 (672)
Q Consensus 505 ~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 578 (672)
.+++.+|.+|+ ..+++++|+.+|+++++. ++ +.+++++|.+|.. .|++++|+.+|+++++..|+..
T Consensus 40 ~~~~~lg~~~~----~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 40 NALYWLGESYY----ATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG----EGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp HHHHHHHHHHH----HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTSH
T ss_pred HHHHHHHHHHH----HhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCCh
Confidence 67889999999 889999999999999873 56 8899999999987 8999999999999999988764
No 164
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.69 E-value=3.8e-07 Score=76.86 Aligned_cols=106 Identities=10% Similarity=-0.021 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHH
Q 005877 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL 427 (672)
Q Consensus 352 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~ 427 (672)
+.+++.+|.++.. .+++++|+.+|+++++. .++.+++.+|.++.. .+++++|+.+++++++..+ +.++
T Consensus 4 ~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 75 (118)
T 1elw_A 4 VNELKEKGNKALS----VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK----KGDYQKAYEDGCKTVDLKPDWGKGY 75 (118)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh----hccHHHHHHHHHHHHHhCcccHHHH
Confidence 4455666666666 66666666666666553 355666666666665 6666666666666666553 3456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 005877 428 SRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWI 465 (672)
Q Consensus 428 ~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~ 465 (672)
..+|.++...|++++|+.+|+++++. +++.+...++.+
T Consensus 76 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 76 SRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 66666666677777777777766554 345555554443
No 165
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.68 E-value=6.8e-07 Score=76.09 Aligned_cols=108 Identities=26% Similarity=0.377 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHH
Q 005877 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL 427 (672)
Q Consensus 352 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~ 427 (672)
+.+++.+|.++.. .+++++|+.+|+++++. .+..+++.+|.++.. .+++++|+.+++++++..+ +.++
T Consensus 9 ~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 80 (125)
T 1na0_A 9 AEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAW 80 (125)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCccHHHH
Confidence 4556666666666 66777777777766653 355666677776665 6677777777777766543 4456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 005877 428 SRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILD 467 (672)
Q Consensus 428 ~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~ 467 (672)
..+|.++...|++++|+.+++++++. .++.+..+++.++.
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 66777777777777777777777554 45666666666554
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.67 E-value=2.1e-07 Score=77.72 Aligned_cols=100 Identities=15% Similarity=0.062 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC
Q 005877 424 WSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN 503 (672)
Q Consensus 424 ~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 503 (672)
+.++..+|..+...|++++|+.+|+++++. .+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----------------------------------------------~~~~ 39 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL----------------------------------------------DPEE 39 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH----------------------------------------------CCCC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh----------------------------------------------CcCC
Confidence 445566677777777777777777666553 2445
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--C--CHHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHhcCCCC
Q 005877 504 EHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--S--NAQAMFNLGYMHEHGQGLP-LDLHLAKRYYDQALEVDPAA 577 (672)
Q Consensus 504 ~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~--~~~a~~~Lg~~y~~g~g~~-~d~~~A~~~~~~A~~~~~~~ 577 (672)
+.+++++|.+|. ..+++++|+.+|+++++. . ++.+++++|.+|.. . +++++|+++++++++..|..
T Consensus 40 ~~~~~~~a~~~~----~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 40 SKYWLMKGKALY----NLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY----IEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHHHHH----HTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT----CSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHHH----HccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH----HhCCHHHHHHHHHHHhhcccCC
Confidence 667778888888 788999999999998874 5 78899999999877 7 89999999999999888764
No 167
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.67 E-value=1.5e-06 Score=86.83 Aligned_cols=212 Identities=12% Similarity=0.038 Sum_probs=109.0
Q ss_pred hccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc---cC-HHH------------HHHHHHHHHHc--CCHHHH
Q 005877 221 KSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLR---RD-RTK------------ALMWFSKAADK--GEPQSM 282 (672)
Q Consensus 221 ~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~---~~-~~~------------A~~~~~~a~~~--~~~~a~ 282 (672)
+-.|+|.++|....+..........+.+.+.|...+..-. .. ..+ |+..|++.++. ....+.
T Consensus 24 fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~~~~~~~~a~~~la~~~~~~a~~~l~~l~~~~~~~~~~~ 103 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQDPTSKLGKVLDLYVQFLDTKNIEELENLLKDKQNSPYEL 103 (310)
T ss_dssp HTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCCSSSTTHHHHHHHHHHHTTTCCHHHHHTTTTSCCCHHHH
T ss_pred HHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCCCCCHHHHHHHHHHHHhcccHHHHHHHHHhcCCCCcHHH
Confidence 4567777777754433222334444545555554431100 00 111 23334433332 344555
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCC------H
Q 005877 283 EFLGEIYARGAGVERNYTKALEWLTHAARQ----QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE------A 352 (672)
Q Consensus 283 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~------~ 352 (672)
+.+|.++.. .+++++|++++.++++. ++.++...+..++.. .++.++|.+.+++..+... .
T Consensus 104 ~~la~i~~~----~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~-----~~r~d~A~k~l~~~~~~~~d~~~~~d 174 (310)
T 3mv2_B 104 YLLATAQAI----LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL-----NNNVSTASTIFDNYTNAIEDTVSGDN 174 (310)
T ss_dssp HHHHHHHHH----HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHhcCccccccch
Confidence 666666666 66666666666666554 245556666666664 4566666666666554433 3
Q ss_pred HHHHHHHHH--HHc-CCCchhcHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHH-----
Q 005877 353 GGHYNLGVM--YYK-GIGVKRDVKLACKYFLVAANAGH----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAE----- 420 (672)
Q Consensus 353 ~a~~~Lg~~--y~~-g~g~~~~~~~A~~~~~~A~~~~~----~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~----- 420 (672)
.....|+.. ... | .+++.+|+..|+++.+..+ ....++ ++.. .+++++|...++++.+
T Consensus 175 ~~l~~Laea~v~l~~g---~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~----~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 175 EMILNLAESYIKFATN---KETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQ----QRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp HHHHHHHHHHHHHHHT---CSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHH----HTCHHHHHHHHHHHHSHHHHT
T ss_pred HHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHH----cCCHHHHHHHHHHHHHhcccc
Confidence 344444433 221 1 2356666666666655432 222222 4444 5666666666665443
Q ss_pred -------cCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 421 -------RGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 421 -------~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
..++.++.++....+..|+ +|.++++++.+.
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 2244555555555555565 566666666544
No 168
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.66 E-value=5.3e-08 Score=100.42 Aligned_cols=151 Identities=15% Similarity=0.039 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005877 387 HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWIL 466 (672)
Q Consensus 387 ~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l 466 (672)
....++.+|..+.. .+++++|+.+|+++++..+.... +...|++.++...+. ..+++|+|.++
T Consensus 178 ~a~~~~~~g~~~~~----~g~~~~A~~~y~~Al~~~p~~~~------~~~~~~~~~~~~~l~-------~~~~~nla~~~ 240 (338)
T 2if4_A 178 AADRRKMDGNSLFK----EEKLEEAMQQYEMAIAYMGDDFM------FQLYGKYQDMALAVK-------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHHTCS----SSCCHHHHHHHHHHHHHSCHHHH------HTCCHHHHHHHHHHH-------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHhccchh------hhhcccHHHHHHHHH-------HHHHHHHHHHH
Confidence 46778888888876 88889999999888887765442 223344444443332 23778888888
Q ss_pred HHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHH
Q 005877 467 DKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE--QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQA 542 (672)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a 542 (672)
.+ .+++++|+.+++++++ +.++.+++++|.+|. ..+++++|+.+|+++++ ++++.+
T Consensus 241 ~~----------------~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~----~~g~~~~A~~~l~~al~l~p~~~~a 300 (338)
T 2if4_A 241 IK----------------LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKA----ELGQMDSARDDFRKAQKYAPDDKAI 300 (338)
T ss_dssp HT----------------TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH----TTTCHHHHHHHHHHTTC--------
T ss_pred HH----------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHCCCCHHH
Confidence 77 6778899999988754 567888999999998 88899999999999865 467888
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877 543 MFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA 577 (672)
Q Consensus 543 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 577 (672)
+.+|+.+... ..+..+++...|++++...|+.
T Consensus 301 ~~~L~~l~~~---~~~~~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 301 RRELRALAEQ---EKALYQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHhhCCCCCC
Confidence 8888887543 2567788888899888887764
No 169
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.65 E-value=1.6e-07 Score=83.87 Aligned_cols=95 Identities=13% Similarity=-0.065 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHcCCCccCCHHHHHHHHHH
Q 005877 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGH--------------QKAFYQLAKMFHTGVGLKKNLHMATALYKL 417 (672)
Q Consensus 352 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~--------------~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~ 417 (672)
+..+.++|..+.. .+++++|+..|++|++..+ ..++.++|.++.. .+++++|+..|++
T Consensus 11 a~~~~~~G~~l~~----~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~----Lgr~~eAl~~~~k 82 (159)
T 2hr2_A 11 AYLALSDAQRQLV----AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG----LRSFDEALHSADK 82 (159)
T ss_dssp HHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH----CCCHHHHHHHHHH
Confidence 4556677777777 7888888888888876332 2388899988887 8899999999999
Q ss_pred HHHc-------CC--hhHH----HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877 418 VAER-------GP--WSSL----SRWALESYLKGDVGKAFLLYSRMAELG 454 (672)
Q Consensus 418 a~~~-------~~--~~a~----~~lg~~~~~~g~~~~A~~~~~~a~~~g 454 (672)
+++. .| ..++ +++|.++...|++++|+..|+++++..
T Consensus 83 AL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 83 ALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9888 65 4467 999999999999999999999997763
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.65 E-value=3.8e-07 Score=78.56 Aligned_cols=67 Identities=19% Similarity=0.220 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CC-------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Q 005877 502 GNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SN-------AQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALE 572 (672)
Q Consensus 502 ~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~-------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 572 (672)
.++.+++++|.+|. ..+++++|+.+++++++. .+ +.+++++|.+|.. .+++++|+++|+++++
T Consensus 36 ~~~~~~~~la~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 36 TNMTYITNQAAVYF----EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK----EEKYKDAIHFYNKSLA 107 (131)
T ss_dssp TCHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH----HhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHH
Confidence 44566777888887 778888888888888664 33 7788888888877 7888888888888888
Q ss_pred cCCC
Q 005877 573 VDPA 576 (672)
Q Consensus 573 ~~~~ 576 (672)
.+|+
T Consensus 108 ~~~~ 111 (131)
T 1elr_A 108 EHRT 111 (131)
T ss_dssp HCCC
T ss_pred hCCC
Confidence 8775
No 171
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.65 E-value=2.3e-06 Score=87.18 Aligned_cols=222 Identities=9% Similarity=-0.105 Sum_probs=161.9
Q ss_pred CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchh-cHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccC-CH
Q 005877 335 NYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKR-DVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKK-NL 408 (672)
Q Consensus 335 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~-~~ 408 (672)
..++|++++.++++. ++..+++.-+.+... .+ ++++++.++.+++.. .+..+++.-+.++... .+ ++
T Consensus 69 ~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~----l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l---~~~~~ 141 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPAHYTVWQYRFSLLTS----LNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRI---SPQDP 141 (349)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH---CCSCC
T ss_pred CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh---cCCCh
Confidence 446788888888876 478888888888877 55 689999999998874 4788888888888762 14 77
Q ss_pred HHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHH--------HHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCccc
Q 005877 409 HMATALYKLVAERGP--WSSLSRWALESYLKGDVG--------KAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCM 476 (672)
Q Consensus 409 ~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~--------~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~ 476 (672)
++++.++.++++..+ ..++...+.+....|.++ +++.++.++++. .+..|+++.++++.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~----- 216 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG----- 216 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc-----
Confidence 899999999998874 557777777776666665 999999999776 499999999999877432
Q ss_pred CCCCCCCchHhHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhCCCCCC----------------CHHHHHHHHHHHHh--
Q 005877 477 GESGFCTDAERHQCAHSLWWQAS--EQGNEHAALLIGDAYYYGRGTQR----------------DYERAAEAYMHARS-- 536 (672)
Q Consensus 477 ~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lG~~y~~g~g~~~----------------d~~~A~~~~~~A~~-- 536 (672)
...+...++++++++++++ .++|..+++.+..++..+.-... ....-.......+.
T Consensus 217 ----~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (349)
T 3q7a_A 217 ----AETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDP 292 (349)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-C
T ss_pred ----cccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcc
Confidence 1123556899999999875 66789999998888874321100 11222222222211
Q ss_pred ------cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-hcCCC
Q 005877 537 ------QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQAL-EVDPA 576 (672)
Q Consensus 537 ------~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~-~~~~~ 576 (672)
..++.++..|+.+|.. .++..+|.+.++... +.||.
T Consensus 293 ~~~~~~~~s~~al~~l~d~~~~----~~~~~~a~~~~~~l~~~~dpi 335 (349)
T 3q7a_A 293 LPEDTPLPVPLALEYLADSFIE----QNRVDDAAKVFEKLSSEYDQM 335 (349)
T ss_dssp CCSSCCSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCGG
T ss_pred cccccCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhhChH
Confidence 2578899999999987 578899999999986 45665
No 172
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.64 E-value=3e-07 Score=80.44 Aligned_cols=100 Identities=13% Similarity=-0.001 Sum_probs=89.9
Q ss_pred CCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--C
Q 005877 82 PGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--G 157 (672)
Q Consensus 82 ~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~ 157 (672)
+..+..++.+|..++. .+++++|+..|+++. ++.++.+++.+|.+|.. .+++++|+.++++++. +
T Consensus 6 ~~~~~~~~~~g~~~~~-------~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p 74 (137)
T 3q49_B 6 SPSAQELKEQGNRLFV-------GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQALADCRRALELDG 74 (137)
T ss_dssp CCCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCT
T ss_pred cccHHHHHHHHHHHHH-------hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCc
Confidence 4456778888888875 689999999999954 56889999999999999 9999999999999986 7
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Q 005877 158 GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVN 192 (672)
Q Consensus 158 ~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~ 192 (672)
+++.+++.+|.+|...|++++|+.+|+++++..+.
T Consensus 75 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 75 QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 89999999999999999999999999999998765
No 173
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.63 E-value=4.6e-07 Score=79.21 Aligned_cols=96 Identities=13% Similarity=-0.064 Sum_probs=69.8
Q ss_pred CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hh
Q 005877 350 EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WS 425 (672)
Q Consensus 350 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~ 425 (672)
.++.+++.+|.++.. .+++++|+.+|+++++. .++.+++++|.++.. .+++++|+.+|+++++..+ +.
T Consensus 7 ~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~ 78 (137)
T 3q49_B 7 PSAQELKEQGNRLFV----GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQALADCRRALELDGQSVK 78 (137)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred ccHHHHHHHHHHHHH----hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCchhHH
Confidence 356677777777777 77777777777777663 356777777777776 7777777777777777663 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 426 SLSRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 426 a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
+++.+|.++...|++++|+..|+++++.
T Consensus 79 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 79 AHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 6777777777778888888888777654
No 174
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.63 E-value=4.1e-07 Score=82.56 Aligned_cols=76 Identities=13% Similarity=0.029 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CH-HHHHH
Q 005877 387 HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG--YE-VAQSN 461 (672)
Q Consensus 387 ~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g--~~-~a~~n 461 (672)
...+++++|.+|.. .+++++|+.+++++++..| +.+++.+|.++...|++++|+..|+++++.. ++ .....
T Consensus 62 ~~~~~~nla~~~~~----~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~ 137 (162)
T 3rkv_A 62 NIPLYANMSQCYLN----IGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVARE 137 (162)
T ss_dssp HHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 44677777777776 7778888888888777763 5567778888888888888888888876553 44 33444
Q ss_pred HHHHH
Q 005877 462 AAWIL 466 (672)
Q Consensus 462 la~~l 466 (672)
++.+.
T Consensus 138 l~~~~ 142 (162)
T 3rkv_A 138 MKIVT 142 (162)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=8.5e-07 Score=78.39 Aligned_cols=62 Identities=16% Similarity=-0.119 Sum_probs=34.9
Q ss_pred ChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC--CC---HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 005877 123 DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GN---IQSKMAVAYTYLRQDMHDKAVKLYAELAE 188 (672)
Q Consensus 123 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~---~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~ 188 (672)
++..++.+|..+.. .+++++|+.+|+++++. ++ ..++..+|.+|...+++++|+.+|+++++
T Consensus 27 ~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 93 (148)
T 2dba_A 27 SVEQLRKEGNELFK----CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE 93 (148)
T ss_dssp CHHHHHHHHHHHHT----TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 34455555555555 55666666666665552 22 45555666666666666666666655544
No 176
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.63 E-value=3e-06 Score=86.30 Aligned_cols=243 Identities=11% Similarity=0.016 Sum_probs=154.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHH
Q 005877 262 DRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKA 339 (672)
Q Consensus 262 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A 339 (672)
++..+..+++..++.+ ...++|+.++.++++. .+..+.+.-+.+.... ..+++++
T Consensus 52 ~y~~~~~~~r~~~~~~-------------------e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l----~~~l~eE 108 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKE-------------------EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSL----NKSLEDE 108 (349)
T ss_dssp HHHHHHHHHHHHHHTT-------------------CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCCHHHH
T ss_pred HHHHHHHHHHHHHHhC-------------------CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHh----hhhHHHH
Confidence 5666666666554432 2345677777777765 3667777777766641 1157778
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHHcCCCch-h-cHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCccCCHH----
Q 005877 340 KEYFEKAADN--EEAGGHYNLGVMYYKGIGVK-R-DVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLH---- 409 (672)
Q Consensus 340 ~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~-~-~~~~A~~~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~~~~---- 409 (672)
+.++.+++.. .+..++++.+.+... . + ++++++.++.++++.. +..++++-+.+... .+.++
T Consensus 109 L~~~~~~L~~nPKny~aW~hR~wlL~~----l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~----l~~~~~~~~ 180 (349)
T 3q7a_A 109 LRLMNEFAVQNLKSYQVWHHRLLLLDR----ISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSH----FSTLGRISE 180 (349)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHH----HCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHH----HHHTTCCCH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHH----hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccccccch
Confidence 8888777765 377777777777766 4 4 6677778887777643 56777777766654 33333
Q ss_pred ----HHHHHHHHHHHcC--ChhHHHHHHHHHHhcCC-------HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCc
Q 005877 410 ----MATALYKLVAERG--PWSSLSRWALESYLKGD-------VGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSM 474 (672)
Q Consensus 410 ----~A~~~~~~a~~~~--~~~a~~~lg~~~~~~g~-------~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~ 474 (672)
+++++++++++.. +..++...+.+....+. +++++.++.+++.. ++..+++++..++.+.+....
T Consensus 181 ~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~ 260 (349)
T 3q7a_A 181 AQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLV 260 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSG
T ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcc
Confidence 7888888888776 45677788888777775 68889999888644 688999999998887554300
Q ss_pred --------ccCCCCCCCchHhHHHHHHHHHH----HHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 005877 475 --------CMGESGFCTDAERHQCAHSLWWQ----ASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSN 539 (672)
Q Consensus 475 --------~~~~~~~~~~~~~~~~A~~~~~~----a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 539 (672)
+.+........+-.+.++.+... ......+.++..|+++|. .+++.++|.+.++...+.-+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~----~~~~~~~a~~~~~~l~~~~d 333 (349)
T 3q7a_A 261 PILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFI----EQNRVDDAAKVFEKLSSEYD 333 (349)
T ss_dssp GGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHTTC
T ss_pred cccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhhhC
Confidence 00000000000001111111111 011345788899999999 66899999999999875533
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.62 E-value=6.5e-07 Score=77.03 Aligned_cols=106 Identities=16% Similarity=0.109 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC-------
Q 005877 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP------- 423 (672)
Q Consensus 353 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~------- 423 (672)
.+++.+|.++.. .+++++|+.+|+++++. .++.+++++|.++.. .+++++|+.+|+++++..+
T Consensus 5 ~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (131)
T 1elr_A 5 LKEKELGNDAYK----KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE----KGDYNKCRELCEKAIEVGRENREDYR 76 (131)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhccccchhHH
Confidence 445555555555 55666666666665543 245555566666555 5566666666666655432
Q ss_pred --hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Q 005877 424 --WSSLSRWALESYLKGDVGKAFLLYSRMAELG-YEVAQSNAAWIL 466 (672)
Q Consensus 424 --~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g-~~~a~~nla~~l 466 (672)
+.+++.+|.++...|++++|+.+|+++++.. ++.....++.+.
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3455666666666777777777777666553 344444444443
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.61 E-value=3.6e-07 Score=78.98 Aligned_cols=96 Identities=13% Similarity=0.021 Sum_probs=84.6
Q ss_pred cCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh--CCCh---HHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--C
Q 005877 85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESAAM--EGDP---HARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--G 157 (672)
Q Consensus 85 ~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~--~~~~---~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~ 157 (672)
+.+++.+|..++. .+++++|+..|+++.. ++++ .+++.+|.+|.. .+++++|+.+|++++. +
T Consensus 2 ~~~~~~~a~~~~~-------~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~~~~~~p 70 (129)
T 2xev_A 2 ARTAYNVAFDALK-------NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA----TRNFQLAEAQFRDLVSRYP 70 (129)
T ss_dssp -CCHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHH-------hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHCC
Confidence 4567888888875 6899999999999654 5676 799999999999 9999999999999987 6
Q ss_pred CC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 005877 158 GN---IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAV 191 (672)
Q Consensus 158 ~~---~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~ 191 (672)
++ +.+++.+|.+|...|++++|+.+|+++++..|
T Consensus 71 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 71 THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 77 89999999999999999999999999988654
No 179
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=1.2e-06 Score=77.29 Aligned_cols=109 Identities=17% Similarity=0.018 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC-
Q 005877 350 EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGH-----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP- 423 (672)
Q Consensus 350 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~-----~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~- 423 (672)
.++..++.+|..+.. .+++++|+.+|+++++... ..+++++|.+|.. .+++++|+.+++++++..+
T Consensus 26 ~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~ 97 (148)
T 2dba_A 26 SSVEQLRKEGNELFK----CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK----LEDYDKAETEASKAIEKDGG 97 (148)
T ss_dssp CCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH----HccHHHHHHHHHHHHhhCcc
Confidence 356666677777766 6677777777777766432 5666777777766 6777777777777766653
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 005877 424 -WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWIL 466 (672)
Q Consensus 424 -~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l 466 (672)
+.+++.+|.++...|++++|+.+|+++++. ++..+...++.+.
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 456667777777777777777777777554 3555555555443
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.58 E-value=8.5e-07 Score=95.40 Aligned_cols=132 Identities=17% Similarity=0.188 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CC---------------HHHHHH
Q 005877 297 RNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EE---------------AGGHYN 357 (672)
Q Consensus 297 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~---------------~~a~~~ 357 (672)
.++++|+..|+++.+. ..+.++..+|..+.. .+++++|+.+|++|++. .+ ..++++
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~-----~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~n 322 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFK-----GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLN 322 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHH
Confidence 3444555555554432 345566667777665 55777777777776653 22 344444
Q ss_pred HHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHH
Q 005877 358 LGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALE 433 (672)
Q Consensus 358 Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~ 433 (672)
+|.+|.. .+++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++++..| ..++..++.+
T Consensus 323 la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~----~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 323 LAMCYLK----LREYTKAVECCDKALGLDSANEKGLYRRGEAQLL----MNEFESAKGDFEKVLEVNPQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTC----CHHHHHHHH
T ss_pred HHHHHHH----hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4444444 44444444444444442 234444444444444 4444444444444444432 2233444444
Q ss_pred HHhcCCHH
Q 005877 434 SYLKGDVG 441 (672)
Q Consensus 434 ~~~~g~~~ 441 (672)
+...++++
T Consensus 395 ~~~~~~~~ 402 (457)
T 1kt0_A 395 QKKAKEHN 402 (457)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44333333
No 181
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.54 E-value=4.7e-07 Score=75.58 Aligned_cols=98 Identities=11% Similarity=-0.118 Sum_probs=87.4
Q ss_pred CCCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--
Q 005877 81 DPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE-- 156 (672)
Q Consensus 81 ~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~-- 156 (672)
+++++.+++.+|..++. .+++++|+..|+++. .+.++.+++.+|.+|.. .+++++|+.++++++.
T Consensus 2 ~p~~~~~~~~~~~~~~~-------~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~ 70 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYD-------AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN----LERYEEAVDCYNYVINVI 70 (112)
T ss_dssp CCSSTTGGGGHHHHHHS-------SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTS
T ss_pred CCCcHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhC
Confidence 46678888899998773 689999999999965 45789999999999998 8999999999999987
Q ss_pred CC--CHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHH
Q 005877 157 GG--NIQSKMAVAYTYLRQ-DMHDKAVKLYAELAEI 189 (672)
Q Consensus 157 ~~--~~~a~~~Lg~~y~~~-~~~~~A~~~y~~a~~~ 189 (672)
+. ++.++..+|.++... |++++|+.+++++++.
T Consensus 71 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 71 EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 56 899999999999999 9999999999998764
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.54 E-value=1e-06 Score=91.78 Aligned_cols=127 Identities=14% Similarity=0.062 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHH
Q 005877 315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQL 394 (672)
Q Consensus 315 ~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L 394 (672)
+..+..+|..+.. .+++++|+.+|+++++...... . ..+.+++.. .......+++++
T Consensus 223 a~~~~~~g~~~~~-----~g~~~~Ai~~y~kAl~~~~~~~---------~----~~~~~~~~~-----~~~~~~~~~~nl 279 (370)
T 1ihg_A 223 SEDLKNIGNTFFK-----SQNWEMAIKKYTKVLRYVEGSR---------A----AAEDADGAK-----LQPVALSCVLNI 279 (370)
T ss_dssp HHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHH---------H----HSCHHHHGG-----GHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHHhhcCc---------c----ccChHHHHH-----HHHHHHHHHHHH
Confidence 6667778888775 6688888888888775210000 0 001111100 112245666677
Q ss_pred HHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Q 005877 395 AKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDK 468 (672)
Q Consensus 395 ~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~ 468 (672)
|.+|.. .+++++|+.+|+++++..+ +.+++.+|.++...|++++|+.+|+++++. ++..+..+++.++..
T Consensus 280 a~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~ 353 (370)
T 1ihg_A 280 GACKLK----MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK 353 (370)
T ss_dssp HHHHHH----TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHh----ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 777766 6777777777777776653 456677777777777777777777777554 466666677766655
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.53 E-value=2.9e-08 Score=107.49 Aligned_cols=123 Identities=13% Similarity=0.046 Sum_probs=72.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh--CCCHH
Q 005877 430 WALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE--QGNEH 505 (672)
Q Consensus 430 lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~ 505 (672)
+|..++..|++++|+.+|+++++. .+..++.++|.++.+ .+++++|+.+++++++ +.++.
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~----------------~g~~~~A~~~~~~al~l~p~~~~ 75 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR----------------TECYGYALGDATRAIELDKKYIK 75 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----------------hcCHHHHHHHHHHHHHhCCCCHH
Confidence 333444444555555555554333 234445555555544 4445555555554433 34567
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHH--HHcCCCCCCCHHHHHHHHH-----------HH
Q 005877 506 AALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYM--HEHGQGLPLDLHLAKRYYD-----------QA 570 (672)
Q Consensus 506 a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~--y~~g~g~~~d~~~A~~~~~-----------~A 570 (672)
+++++|.+|. ..+++++|+++|++|++. +++.++.++|.+ +.. .+++++|++.++ ++
T Consensus 76 ~~~~lg~~~~----~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~a 147 (477)
T 1wao_1 76 GYYRRAASNM----ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK----QKAFERAIAGDEHKRSVVDSLDIES 147 (477)
T ss_dssp HHHHHHHHHH----HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHH----HHHHCCC------CCSTTTCCTTSS
T ss_pred HHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHhccccccchhHhhhhhhh
Confidence 7778888888 778888888888888663 567777788777 554 577888888888 77
Q ss_pred HhcCCC
Q 005877 571 LEVDPA 576 (672)
Q Consensus 571 ~~~~~~ 576 (672)
++.+|+
T Consensus 148 l~~~~~ 153 (477)
T 1wao_1 148 MTIEDE 153 (477)
T ss_dssp CCCCTT
T ss_pred cccccc
Confidence 766654
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.50 E-value=1.1e-06 Score=91.64 Aligned_cols=107 Identities=15% Similarity=0.152 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc------------------CCHHHHHHHHHHHHcCCCCCcCCHHHHHH
Q 005877 280 QSMEFLGEIYARGAGVERNYTKALEWLTHAARQ------------------QLYSAYNGIGYLYVKGYGVEKKNYTKAKE 341 (672)
Q Consensus 280 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------------------~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~ 341 (672)
..+..+|..+.. .+++++|+..|+++++. .++.++.++|.+|.. .+++++|+.
T Consensus 224 ~~~~~~g~~~~~----~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-----~g~~~~A~~ 294 (370)
T 1ihg_A 224 EDLKNIGNTFFK----SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK-----MSDWQGAVD 294 (370)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH-----TTCHHHHHH
T ss_pred HHHHHHHHHHHH----hcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh-----ccCHHHHHH
Confidence 446667777777 77788888888777752 123344444444443 334444444
Q ss_pred HHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 005877 342 YFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFH 399 (672)
Q Consensus 342 ~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~ 399 (672)
+++++++. +++.+++++|.+|.. .+++++|+.+|++|++. ++..++..++.++.
T Consensus 295 ~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 295 SCLEALEIDPSNTKALYRRAQGWQG----LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 352 (370)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44444443 244444444444444 44444444444444432 23444444444443
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.50 E-value=8e-08 Score=104.01 Aligned_cols=120 Identities=13% Similarity=0.038 Sum_probs=69.3
Q ss_pred HHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCccc
Q 005877 127 RSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIE 204 (672)
Q Consensus 127 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~ 204 (672)
++.+|..|.. .+++++|+.+|++|++ +.++.++..+|.+|...+++++|+.+|+++++.
T Consensus 9 ~~~lg~~~~~----~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------------- 69 (477)
T 1wao_1 9 LKTQANDYFK----AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--------------- 69 (477)
T ss_dssp SSSSSSSTTT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---------------
T ss_pred HHHHHHHHHH----hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---------------
Confidence 3444445544 5666666666666654 455666666666666666666666666665541
Q ss_pred chhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHH
Q 005877 205 PIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSM 282 (672)
Q Consensus 205 ~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~ 282 (672)
++.++.+++.+|.+|... +++++|+++|+++++. +++.++
T Consensus 70 ---------------------------------~p~~~~~~~~lg~~~~~~-----g~~~eA~~~~~~al~~~p~~~~~~ 111 (477)
T 1wao_1 70 ---------------------------------DKKYIKGYYRRAASNMAL-----GKFRAALRDYETVVKVKPHDKDAK 111 (477)
T ss_dssp ---------------------------------CTTCHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHSTTCTTHH
T ss_pred ---------------------------------CCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCHHHH
Confidence 234556666666666665 3666676666666653 455566
Q ss_pred HHHHHH--HHcCCCCcCCHHHHHHHHH
Q 005877 283 EFLGEI--YARGAGVERNYTKALEWLT 307 (672)
Q Consensus 283 ~~Lg~~--y~~g~g~~~~~~~A~~~~~ 307 (672)
..++.+ +.. .+++++|+..++
T Consensus 112 ~~l~~~~~~~~----~g~~~~A~~~~~ 134 (477)
T 1wao_1 112 MKYQECNKIVK----QKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHH----HHHHCCC-----
T ss_pred HHHHHHHHHHH----HHHHHHHhcccc
Confidence 666665 555 566666666666
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.49 E-value=3.4e-07 Score=94.38 Aligned_cols=147 Identities=10% Similarity=-0.019 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHH
Q 005877 314 LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQ 393 (672)
Q Consensus 314 ~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~ 393 (672)
.+..+..+|..+.. .+++++|+.+|+++++...... .+.. .+++.++...+. ..++++
T Consensus 178 ~a~~~~~~g~~~~~-----~g~~~~A~~~y~~Al~~~p~~~------~~~~----~~~~~~~~~~l~-------~~~~~n 235 (338)
T 2if4_A 178 AADRRKMDGNSLFK-----EEKLEEAMQQYEMAIAYMGDDF------MFQL----YGKYQDMALAVK-------NPCHLN 235 (338)
T ss_dssp HHHHHHHHHHHTCS-----SSCCHHHHHHHHHHHHHSCHHH------HHTC----CHHHHHHHHHHH-------THHHHH
T ss_pred HHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHhccch------hhhh----cccHHHHHHHHH-------HHHHHH
Confidence 47788899999975 7799999999999988764433 1223 455555554432 247788
Q ss_pred HHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHh
Q 005877 394 LAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMA--ELGYEVAQSNAAWILDKY 469 (672)
Q Consensus 394 L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~--~~g~~~a~~nla~~l~~~ 469 (672)
+|.+|.. .+++++|+.+|+++++..+ ..+++++|.++...|++++|+.+|++++ ++++..++.+++.+....
T Consensus 236 la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 236 IAACLIK----LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQE 311 (338)
T ss_dssp HHHHHHT----TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------
T ss_pred HHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 9999887 8899999999999988774 5678899999999999999999999985 445777777777664331
Q ss_pred CCCCcccCCCCCCCchHhHHHHHHHHHHHHhC
Q 005877 470 GEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501 (672)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 501 (672)
.+..+++..+|+++...
T Consensus 312 ---------------~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 312 ---------------KALYQKQKEMYKGIFKG 328 (338)
T ss_dssp --------------------------------
T ss_pred ---------------HHHHHHHHHHHHHhhCC
Confidence 33455666666665443
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.46 E-value=2e-07 Score=79.49 Aligned_cols=86 Identities=9% Similarity=0.045 Sum_probs=74.2
Q ss_pred hHhHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCC
Q 005877 485 AERHQCAHSLWWQASEQG-----NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLP 557 (672)
Q Consensus 485 ~~~~~~A~~~~~~a~~~~-----~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~ 557 (672)
.+++++|+.+|+++++.+ ++.+++++|.+|. ..+++++|+.+|+++++ ++++.+++++|.+|.. .
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~ 74 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFR----TLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN----L 74 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----H
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----c
Confidence 567889999999998763 3678899999999 89999999999999987 4789999999999988 8
Q ss_pred CCHHHHHHHHHHHHhcCCCCc
Q 005877 558 LDLHLAKRYYDQALEVDPAAK 578 (672)
Q Consensus 558 ~d~~~A~~~~~~A~~~~~~~~ 578 (672)
|++++|+.+++++++..|+..
T Consensus 75 g~~~~A~~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 75 GRYEQGVELLLKIIAETSDDE 95 (117)
T ss_dssp TCHHHHHHHHHHHHHHHCCCH
T ss_pred CCHHHHHHHHHHHHHhCCCcH
Confidence 999999999999999987753
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.45 E-value=2.3e-07 Score=79.16 Aligned_cols=84 Identities=12% Similarity=0.018 Sum_probs=73.3
Q ss_pred hhhHHHHHHHHHHHHhC-----CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHH
Q 005877 105 VRVMEEATSEVESAAME-----GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHD 177 (672)
Q Consensus 105 ~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~ 177 (672)
.|++++|+..|+++... .++.+++.||.+|.. .+++++|+.+|+++++ ++++.+++.+|.++...|+++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT----LGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHH
Confidence 57889999999997654 567899999999999 9999999999999987 789999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 005877 178 KAVKLYAELAEIAVN 192 (672)
Q Consensus 178 ~A~~~y~~a~~~~~~ 192 (672)
+|+.+|+++++..+.
T Consensus 79 ~A~~~~~~al~~~p~ 93 (117)
T 3k9i_A 79 QGVELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999999987643
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.44 E-value=8.6e-06 Score=89.70 Aligned_cols=172 Identities=7% Similarity=-0.091 Sum_probs=137.2
Q ss_pred CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhc----------HHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 005877 335 NYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRD----------VKLACKYFLVAANA--GHQKAFYQLAKMFHT 400 (672)
Q Consensus 335 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~----------~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~ 400 (672)
-.++|++++.++++. ++..++++-+.++.. .++ +++++.++.++++. .+..++++-+.++..
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~----l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQH----LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHh----cccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 447888999998876 478888888888877 555 99999999999874 578999999999987
Q ss_pred CCCccC--CHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcC-CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCC
Q 005877 401 GVGLKK--NLHMATALYKLVAERGP--WSSLSRWALESYLKG-DVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGS 473 (672)
Q Consensus 401 g~g~~~--~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g-~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~ 473 (672)
.+ +++++++++.++++.++ ..++...+.+....| .+++++.++.++++. .+..|+++.+.++.+.+...
T Consensus 120 ----l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 120 ----LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp ----CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred ----cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 66 67999999999999984 568888999999999 899999999999766 58999999999998743210
Q ss_pred cccCCCCCCCchHhHHHHHHHHHHHH--hCCCHHHHHHHHHHHHh
Q 005877 474 MCMGESGFCTDAERHQCAHSLWWQAS--EQGNEHAALLIGDAYYY 516 (672)
Q Consensus 474 ~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lG~~y~~ 516 (672)
-. +.. ...+.+.++++++++.+++ .+++..+++.+++++..
T Consensus 196 ~~-~~~-~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 196 DS-GPQ-GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238 (567)
T ss_dssp CS-SSC-CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred cc-ccc-ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhc
Confidence 00 000 0123578899999999875 56778999999999883
No 190
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.39 E-value=6.4e-07 Score=79.73 Aligned_cols=87 Identities=10% Similarity=0.065 Sum_probs=73.2
Q ss_pred hhhHHHHHHHHHHH--HhCCChHHHHHHHHHhhcCCc-------ccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcc
Q 005877 105 VRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMM-------RERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQ 173 (672)
Q Consensus 105 ~~~~~~A~~~~~~a--~~~~~~~a~~~Lg~~y~~G~g-------~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~ 173 (672)
.+.+++|+..++++ .+++++++++++|.++.. .+ ..+.+++|+..|++|+. +++..++++||.+|...
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~-l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLE-LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 46789999999994 567999999999999986 11 01235799999999986 78999999999999987
Q ss_pred C-----------CHHHHHHHHHHHHHHHHh
Q 005877 174 D-----------MHDKAVKLYAELAEIAVN 192 (672)
Q Consensus 174 ~-----------~~~~A~~~y~~a~~~~~~ 192 (672)
| ++++|+.+|+++++++|.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 4 899999999999998654
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.37 E-value=6.6e-06 Score=90.61 Aligned_cols=183 Identities=7% Similarity=-0.036 Sum_probs=146.5
Q ss_pred cHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCC----------HHHHHHHHHHHHHcCC--hhHHHHHHHHHHh
Q 005877 371 DVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKN----------LHMATALYKLVAERGP--WSSLSRWALESYL 436 (672)
Q Consensus 371 ~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~----------~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~ 436 (672)
-.++|++.+.++++. .+..++++-+.++.. .++ +++++.+++++++..| ..++...+.+...
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~----l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQH----LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHh----cccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 446889999999874 578999999998876 455 9999999999999985 5688899999999
Q ss_pred cC--CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhC--CCHHHHHHH
Q 005877 437 KG--DVGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ--GNEHAALLI 510 (672)
Q Consensus 437 ~g--~~~~A~~~~~~a~~~g--~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l 510 (672)
.+ ++++++..+.++++.+ +..|+++-++++.+.+. .++++++++.++++. .+..++++.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~---------------~~~~el~~~~~~I~~~p~n~saW~~r 184 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAV---------------APAEELAFTDSLITRNFSNYSSWHYR 184 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC---------------CHHHHHHHHHTTTTTTCCCHHHHHHH
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCC---------------ChHHHHHHHHHHHHHCCCCccHHHHH
Confidence 99 7799999999998775 89999999999988321 578999999987655 579999999
Q ss_pred HHHHHhCCC----------CCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHH------------HHHH
Q 005877 511 GDAYYYGRG----------TQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHL------------AKRY 566 (672)
Q Consensus 511 G~~y~~g~g----------~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~------------A~~~ 566 (672)
|.++..-.+ ..+.+++|++++.+|+. +++..+++++++++..+. .++. |+.+
T Consensus 185 ~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~----~~~~~~~~~~~~~~~~~~~~ 260 (567)
T 1dce_A 185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE----PHDVLCCVHVSREEACLSVC 260 (567)
T ss_dssp HHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC----CCSCEEEEEEETTTTEEEEE
T ss_pred HHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC----CccceeeeeeccCCceEEEE
Confidence 999875110 12568999999999976 588999999999997742 2222 4455
Q ss_pred HHHHHhcCCC
Q 005877 567 YDQALEVDPA 576 (672)
Q Consensus 567 ~~~A~~~~~~ 576 (672)
|++|++.+|.
T Consensus 261 f~~~i~~~~~ 270 (567)
T 1dce_A 261 FSRPLTVGSR 270 (567)
T ss_dssp EEEEECTTBT
T ss_pred eccceecccc
Confidence 6667666644
No 192
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.36 E-value=2.2e-06 Score=76.33 Aligned_cols=103 Identities=14% Similarity=0.180 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhc----------HHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 005877 335 NYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRD----------VKLACKYFLVAANA--GHQKAFYQLAKMFHT 400 (672)
Q Consensus 335 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~----------~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~ 400 (672)
.+++|+..++++++. +++++++++|.++.. .++ +++|+..|++|++. ++..+++++|.+|..
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~----l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLE----LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----hcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 567777777777765 477778888877766 443 45888888888764 467888888888865
Q ss_pred C-CC------ccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 401 G-VG------LKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 401 g-~g------~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
- .- ..+++++|+.+|++|++..|... .+.++++...++.+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~------------~y~~al~~~~ka~el 140 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT------------HYLKSLEMTAKAPQL 140 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH------------HHHHHHHHHHTHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHhCHhc
Confidence 0 00 01478888888888888887543 234555555555444
No 193
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.29 E-value=1.8e-06 Score=71.27 Aligned_cols=70 Identities=14% Similarity=0.166 Sum_probs=62.6
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877 500 EQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA 577 (672)
Q Consensus 500 ~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 577 (672)
+++++.+++.+|.+|+ ..+++++|+.+|+++++ ++++.++++||.+|.. .+++++|+++|++++++.+..
T Consensus 3 ~p~~~~~~~~lg~~~~----~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHL----KHDNASRALALFEELVETDPDYVGTYYHLGKLYER----LDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp --CCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhhhcC
Confidence 5778999999999999 89999999999999987 4789999999999988 899999999999999986543
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.22 E-value=5.1e-06 Score=68.46 Aligned_cols=69 Identities=23% Similarity=0.210 Sum_probs=62.6
Q ss_pred hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Q 005877 120 MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVN 192 (672)
Q Consensus 120 ~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~ 192 (672)
+++++.+++.+|.+|.. .+++++|+.+|+++++ ++++.+++.||.+|...|++++|+.+|+++++..+.
T Consensus 3 ~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLK----HDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 57889999999999998 9999999999999987 788999999999999999999999999999987654
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.21 E-value=5.9e-06 Score=69.85 Aligned_cols=80 Identities=14% Similarity=0.090 Sum_probs=70.4
Q ss_pred HHHHHHHHHHh--CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHH
Q 005877 490 CAHSLWWQASE--QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKR 565 (672)
Q Consensus 490 ~A~~~~~~a~~--~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 565 (672)
+|+..++++++ +.++.+++.+|.+|. ..+++++|+.+|+++++ +.++.++++||.+|.. .|++++|+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 74 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYA----EHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG----QGDRAGARQ 74 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHH----HccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH----cCCHHHHHH
Confidence 46777887655 567999999999999 89999999999999987 4789999999999987 899999999
Q ss_pred HHHHHHhcCCCC
Q 005877 566 YYDQALEVDPAA 577 (672)
Q Consensus 566 ~~~~A~~~~~~~ 577 (672)
+|+++++..|..
T Consensus 75 ~~~~al~~~~~~ 86 (115)
T 2kat_A 75 AWESGLAAAQSR 86 (115)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhcccc
Confidence 999999987654
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.18 E-value=9.3e-06 Score=64.90 Aligned_cols=62 Identities=24% Similarity=0.273 Sum_probs=50.6
Q ss_pred ChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 005877 123 DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAE 188 (672)
Q Consensus 123 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~ 188 (672)
++.+++.+|.+|.. .+++++|+.+|++++. ++++.+++.+|.++...+++++|+.+|+++++
T Consensus 8 ~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 8 SAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45677888888887 7888888888888876 57788888888888888888888888888766
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.16 E-value=1.2e-06 Score=73.29 Aligned_cols=63 Identities=10% Similarity=-0.009 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC
Q 005877 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG 422 (672)
Q Consensus 352 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~ 422 (672)
+.+++.+|.++.. .+++++|+.+|+++++. .++.+++++|.++.. .+++++|+.+|+++++..
T Consensus 4 ~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 4 FEKQKEQGNSLFK----QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK----LGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhC
Confidence 3455555555555 55556666665555542 345555555555555 555555555555555554
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.15 E-value=1.1e-05 Score=68.16 Aligned_cols=79 Identities=15% Similarity=-0.010 Sum_probs=71.2
Q ss_pred HHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 005877 110 EATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAE 185 (672)
Q Consensus 110 ~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~ 185 (672)
+|+..|+++. ++.++.+++.+|.+|.. .+++++|+.+|++++. +.++.+++.+|.+|...|++++|+.+|++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAE----HEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5778888854 45889999999999998 9999999999999986 68899999999999999999999999999
Q ss_pred HHHHHHh
Q 005877 186 LAEIAVN 192 (672)
Q Consensus 186 a~~~~~~ 192 (672)
+++..+.
T Consensus 79 al~~~~~ 85 (115)
T 2kat_A 79 GLAAAQS 85 (115)
T ss_dssp HHHHHHH
T ss_pred HHHhccc
Confidence 9987654
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.06 E-value=3.5e-05 Score=61.44 Aligned_cols=13 Identities=31% Similarity=0.381 Sum_probs=5.0
Q ss_pred hcHHHHHHHHHHH
Q 005877 370 RDVKLACKYFLVA 382 (672)
Q Consensus 370 ~~~~~A~~~~~~A 382 (672)
+++++|+.+|+++
T Consensus 23 ~~~~~A~~~~~~a 35 (91)
T 1na3_A 23 GDYDEAIEYYQKA 35 (91)
T ss_dssp TCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 3333333333333
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.06 E-value=3.1e-05 Score=83.23 Aligned_cols=80 Identities=10% Similarity=0.128 Sum_probs=45.9
Q ss_pred cCCHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC-------CC---HHHH
Q 005877 296 ERNYTKALEWLTHAARQ-------QL---YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-------EE---AGGH 355 (672)
Q Consensus 296 ~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~-------~~---~~a~ 355 (672)
+|++++|+..|+++++. ++ ..++++||.+|.. +|++++|+.+++++++. ++ +.++
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~-----~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY-----LQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 56677777777666642 12 2345666666654 45666666666666543 12 3345
Q ss_pred HHHHHHHHcCCCchhcHHHHHHHHHHHHH
Q 005877 356 YNLGVMYYKGIGVKRDVKLACKYFLVAAN 384 (672)
Q Consensus 356 ~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 384 (672)
++||.+|.. .|++++|..+|++|++
T Consensus 397 ~nLa~~~~~----~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 397 MRAGLTNWH----AGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence 566666665 5566666666666543
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.05 E-value=3.3e-05 Score=64.20 Aligned_cols=68 Identities=16% Similarity=0.115 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877 503 NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK 578 (672)
Q Consensus 503 ~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 578 (672)
++.+++.+|.+++ ..+++++|+.+|+++++ +.++.+++++|.+|.. .+++++|+.+++++++++|+..
T Consensus 3 ~~~~~~~~g~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~ 72 (111)
T 2l6j_A 3 QFEKQKEQGNSLF----KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK----LGEYTQAIQMCQQGLRYTSTAE 72 (111)
T ss_dssp HHHHHHHHHHHHH----TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTSCSSTT
T ss_pred hHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCcc
Confidence 3578899999999 89999999999999977 4789999999999988 8999999999999999999863
No 202
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.00 E-value=4.8e-05 Score=66.86 Aligned_cols=89 Identities=9% Similarity=0.057 Sum_probs=76.6
Q ss_pred CchHhHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHhcC----CHHHHHHHHHHHHcC
Q 005877 483 TDAERHQCAHSLWWQASE--QGNEHAALLIGDAYYYGRGTQR---DYERAAEAYMHARSQS----NAQAMFNLGYMHEHG 553 (672)
Q Consensus 483 ~~~~~~~~A~~~~~~a~~--~~~~~a~~~lG~~y~~g~g~~~---d~~~A~~~~~~A~~~~----~~~a~~~Lg~~y~~g 553 (672)
...+....+.+.|..... +.+.++.+++||++. ... +.++++..++..++.+ +.+++|+||..|.+
T Consensus 9 l~~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv----~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k- 83 (152)
T 1pc2_A 9 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLV----RSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR- 83 (152)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH----TCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH-
Confidence 347788888888887766 456999999999999 545 7889999999998865 46899999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCcc
Q 005877 554 QGLPLDLHLAKRYYDQALEVDPAAKL 579 (672)
Q Consensus 554 ~g~~~d~~~A~~~~~~A~~~~~~~~~ 579 (672)
.+|+++|++|++++++.+|+...
T Consensus 84 ---l~~Y~~A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 84 ---LKEYEKALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp ---TSCHHHHHHHHHHHHHHCTTCHH
T ss_pred ---ccCHHHHHHHHHHHHhcCCCCHH
Confidence 89999999999999999998654
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.99 E-value=4.3e-05 Score=82.21 Aligned_cols=111 Identities=8% Similarity=-0.054 Sum_probs=93.1
Q ss_pred cCHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-------CCH---HHHHH
Q 005877 261 RDRTKALMWFSKAADK-------GE---PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-------QLY---SAYNG 320 (672)
Q Consensus 261 ~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~~---~a~~~ 320 (672)
+++++|+..++++++. .+ ..++.+||.+|.. +|++++|+.+++++++. +++ .++++
T Consensus 323 g~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~----~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 323 GLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY----LQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp TCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4999999999999873 34 4688999999999 99999999999999863 343 46899
Q ss_pred HHHHHHcCCCCCcCCHHHHHHHHHHHHhC-------CC---HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH
Q 005877 321 IGYLYVKGYGVEKKNYTKAKEYFEKAADN-------EE---AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN 384 (672)
Q Consensus 321 Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 384 (672)
||.+|.. +|++++|+.+|++|++. ++ .+...+|+.++.. .+.+++|...|+++.+
T Consensus 399 La~~~~~-----~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e----~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWH-----AGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEME----LRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHH-----TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 9999996 78999999999999874 34 3455788888888 8899999999988754
No 204
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.89 E-value=4.1e-05 Score=63.52 Aligned_cols=68 Identities=24% Similarity=0.267 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhc
Q 005877 503 NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ---------SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEV 573 (672)
Q Consensus 503 ~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~---------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 573 (672)
++.-.+.||..++ ..++|.+|+.||++|++. ..+..+.+||.+|.. .|++++|+.++++|+++
T Consensus 4 sa~dc~~lG~~~~----~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~----~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAY----TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ----QGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH----HccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhc
Confidence 3566789999999 899999999999999863 357889999999988 89999999999999999
Q ss_pred CCCCc
Q 005877 574 DPAAK 578 (672)
Q Consensus 574 ~~~~~ 578 (672)
+|+..
T Consensus 76 ~P~~~ 80 (104)
T 2v5f_A 76 DPEHQ 80 (104)
T ss_dssp CTTCH
T ss_pred CCCCH
Confidence 99863
No 205
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.75 E-value=0.03 Score=60.28 Aligned_cols=202 Identities=9% Similarity=-0.085 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHH
Q 005877 337 TKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATAL 414 (672)
Q Consensus 337 ~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~ 414 (672)
+.....|++++.. ..+..++..+..+.. .++.++|...|++|+.. +.....++......-. ..-+++....
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~----~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~--~~~~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIG----IGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDE--EAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTC--THHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcch--hHHHHHHHHH
Confidence 3445667776663 456666767666666 66777777777777665 3222222222221100 0001111100
Q ss_pred HHHHHH-------cC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCcccCCCCCCC
Q 005877 415 YKLVAE-------RG--PWSSLSRWALESYLKGDVGKAFLLYSRMAELGY--EVAQSNAAWILDKYGEGSMCMGESGFCT 483 (672)
Q Consensus 415 ~~~a~~-------~~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~--~~a~~nla~~l~~~~~~~~~~~~~~~~~ 483 (672)
+.. .+ .. +...+...+......++.+.|...|++| .... ...+...|.+-...
T Consensus 269 ~~~-~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~-------------- 332 (493)
T 2uy1_A 269 YSM-GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYA-------------- 332 (493)
T ss_dssp TC-----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHH--------------
T ss_pred HHh-hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHH--------------
Confidence 000 00 00 0112222333333455677777777777 3221 12222223222210
Q ss_pred chHhHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHH
Q 005877 484 DAERHQCAHSLWWQASEQ--GNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLPLDLH 561 (672)
Q Consensus 484 ~~~~~~~A~~~~~~a~~~--~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~ 561 (672)
.++.+.|..+|+++++. ++++.+..+++... ..++.+.|...|+++.+ +...+.... -++. ..||.+
T Consensus 333 -~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~----~~~~~~~aR~l~er~~k--~~~lw~~~~-~fE~---~~G~~~ 401 (493)
T 2uy1_A 333 -TGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLL----RIGDEENARALFKRLEK--TSRMWDSMI-EYEF---MVGSME 401 (493)
T ss_dssp -HCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH----HHTCHHHHHHHHHHSCC--BHHHHHHHH-HHHH---HHSCHH
T ss_pred -CCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHH--HHHHHHHHH-HHHH---HCCCHH
Confidence 11456677777766542 33554455555544 45677777777777621 221111111 1222 135777
Q ss_pred HHHHHHHHHHh
Q 005877 562 LAKRYYDQALE 572 (672)
Q Consensus 562 ~A~~~~~~A~~ 572 (672)
.+...++++..
T Consensus 402 ~~r~v~~~~~~ 412 (493)
T 2uy1_A 402 LFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777664
No 206
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.72 E-value=0.00077 Score=65.64 Aligned_cols=115 Identities=10% Similarity=-0.087 Sum_probs=85.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcccCC-CCCCCchHhHHHHHHHHHHHHhCCC----HHHHHHHHHHHHhCCC-CCCCHHH
Q 005877 453 LGYEVAQSNAAWILDKYGEGSMCMGE-SGFCTDAERHQCAHSLWWQASEQGN----EHAALLIGDAYYYGRG-TQRDYER 526 (672)
Q Consensus 453 ~g~~~a~~nla~~l~~~~~~~~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~~----~~a~~~lG~~y~~g~g-~~~d~~~ 526 (672)
.++++++++.|.+... +.+. .+-........+|..+++++++.++ ..++..||.+|..--+ .-||.++
T Consensus 149 ~~dve~L~W~ai~~ss------~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ek 222 (301)
T 3u64_A 149 RVDVGTLYWVGTGYVA------AFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEK 222 (301)
T ss_dssp GGGHHHHHHHHHHHHH------HHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHH
T ss_pred ccccHHHHHHHHHHHH------HHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHH
Confidence 4566677766666544 1111 1223346678899999999877765 4589999999984110 1489999
Q ss_pred HHHHHHHHHhc--C-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877 527 AAEAYMHARSQ--S-NAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA 576 (672)
Q Consensus 527 A~~~~~~A~~~--~-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 576 (672)
|.++|++|++. + +..+.+..|..+.. ..+|++.|.+++++|+..+|.
T Consensus 223 A~~~ferAL~LnP~~~id~~v~YA~~l~~---~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 223 AHTAFEHLTRYCSAHDPDHHITYADALCI---PLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCTTCSHHHHHHHHHTTT---TTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHH---hcCCHHHHHHHHHHHHcCCCC
Confidence 99999999874 3 49999999998754 148999999999999999877
No 207
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.67 E-value=0.00018 Score=58.09 Aligned_cols=72 Identities=13% Similarity=0.039 Sum_probs=62.6
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877 500 EQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA 576 (672)
Q Consensus 500 ~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 576 (672)
.+.+++.+..+|.+++... .....++|..++++|++ ++++.+++.||.++.. .|++++|+.+|+++++.+|+
T Consensus 2 ~p~~~~~~~~~a~al~~~~-~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~----~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLH-KQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI----SFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTT-TTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC
Confidence 4678999999999997432 23457999999999976 5899999999999988 89999999999999999988
No 208
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.66 E-value=0.00026 Score=58.57 Aligned_cols=71 Identities=21% Similarity=0.260 Sum_probs=42.2
Q ss_pred HHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC---------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCHHHH
Q 005877 391 FYQLAKMFHTGVGLKKNLHMATALYKLVAERG---------PWSSLSRWALESYLKGDVGKAFLLYSRMAE--LGYEVAQ 459 (672)
Q Consensus 391 ~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~g~~~a~ 459 (672)
.+.||..+.. .+++.+|+.||++|++.. .+..+..+|.+++..|++++|+.+++++++ ++++.+.
T Consensus 8 c~~lG~~~~~----~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 8 CFELGKVAYT----EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHH----ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3444444444 445555555555544421 234566777777777888888888877744 4577777
Q ss_pred HHHHHH
Q 005877 460 SNAAWI 465 (672)
Q Consensus 460 ~nla~~ 465 (672)
.|++++
T Consensus 84 ~n~~~~ 89 (104)
T 2v5f_A 84 GNLKYF 89 (104)
T ss_dssp HHHHHH
T ss_pred hhHHHH
Confidence 777643
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.59 E-value=0.00018 Score=58.38 Aligned_cols=86 Identities=14% Similarity=0.009 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH--hCCChH-HHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHH
Q 005877 88 SYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPH-ARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQS 162 (672)
Q Consensus 88 ~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~-a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a 162 (672)
.+..|..++. .+++++|+..|+++. ++.++. +++.+|.+|.. .+++++|+.+|++++. ++++.+
T Consensus 3 ~~~~a~~~~~-------~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 3 QLKTIKELIN-------QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK----LGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp THHHHHHHHH-------HTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHHHHHHH-------cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHH
Confidence 4566776664 589999999999954 457888 99999999998 8999999999999987 677776
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Q 005877 163 KMAVAYTYLRQDMHDKAVKLYAELAEIAVN 192 (672)
Q Consensus 163 ~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~ 192 (672)
+.. +.+.+++.+|+++....|.
T Consensus 72 ~~~--------~~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 72 QAR--------KMVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHH--------HHHHHHHHHHCCTTHHHHC
T ss_pred HHH--------HHHHHHHHHHHHHhccCcc
Confidence 643 5677888888888776654
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.59 E-value=0.0013 Score=66.88 Aligned_cols=70 Identities=13% Similarity=-0.029 Sum_probs=61.3
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877 500 EQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ-SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA 577 (672)
Q Consensus 500 ~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 577 (672)
.+.++.++..++.++. ..+++++|+.++++|+.. .++.++..+|++++. .|+.++|++.|++|+.++|..
T Consensus 273 ~~~~a~~~~alal~~l----~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~----~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSAL----VKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEM----KGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp GTTCHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSCSH
T ss_pred CCcCHHHHHHHHHHHH----hCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCc
Confidence 4567888888888887 779999999999999886 567777889999987 899999999999999999974
No 211
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.59 E-value=0.0047 Score=66.64 Aligned_cols=151 Identities=15% Similarity=0.110 Sum_probs=103.5
Q ss_pred cCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCC----CCCcCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcC
Q 005877 296 ERNYTKALEWLTHAARQQ---LYSAYNGIGYLYVKGY----GVEKKNYTKAKEYFEKAADNE---EAGGHYNLGVMYYKG 365 (672)
Q Consensus 296 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~----g~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g 365 (672)
.|+.++|++.|++..+.| +...++.|=..+..+. ....++.++|.+.|++..+.+ +..++..|-..|.+
T Consensus 39 ~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~- 117 (501)
T 4g26_A 39 KGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVA- 117 (501)
T ss_dssp SCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh-
Confidence 677788888877777665 5555555544443221 112235677888888777765 56677777777777
Q ss_pred CCchhcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhcCC
Q 005877 366 IGVKRDVKLACKYFLVAANAG---HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG---PWSSLSRWALESYLKGD 439 (672)
Q Consensus 366 ~g~~~~~~~A~~~~~~A~~~~---~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~g~ 439 (672)
.++.++|.+.|++..+.| +...+..+-..|-. .++.++|..+|++..+.+ +...+..+-..+.+.|+
T Consensus 118 ---~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~----~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~ 190 (501)
T 4g26_A 118 ---KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR----KGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKN 190 (501)
T ss_dssp ---HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC
T ss_pred ---cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCC
Confidence 778888888888777665 45555555555555 678888888888887776 33456667777888888
Q ss_pred HHHHHHHHHHHHHcC
Q 005877 440 VGKAFLLYSRMAELG 454 (672)
Q Consensus 440 ~~~A~~~~~~a~~~g 454 (672)
.++|...+++.-+.+
T Consensus 191 ~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 191 ADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC
Confidence 888888888876665
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.55 E-value=0.00016 Score=58.70 Aligned_cols=64 Identities=22% Similarity=0.212 Sum_probs=57.0
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHH-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcc
Q 005877 508 LLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQ-AMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKL 579 (672)
Q Consensus 508 ~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~-a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~ 579 (672)
+..|..+. ..+++++|+.+|+++++. .++. +++++|.+|.. .+++++|+.+|+++++++|+...
T Consensus 4 ~~~a~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~ 70 (99)
T 2kc7_A 4 LKTIKELI----NQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK----LGDWQKALNNYQSAIELNPDSPA 70 (99)
T ss_dssp HHHHHHHH----HHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTSTH
T ss_pred HHHHHHHH----HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHH
Confidence 67888888 889999999999999774 6788 99999999987 89999999999999999988653
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.53 E-value=0.0011 Score=58.16 Aligned_cols=91 Identities=16% Similarity=0.109 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC----CHHHHHHHHHH
Q 005877 440 VGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG----NEHAALLIGDA 513 (672)
Q Consensus 440 ~~~A~~~~~~a~~~g--~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lG~~ 513 (672)
...+...|.+..+.| ...+.+++||.|.+ +....+.++++.+++...+.+ +.+.+|+||..
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~-------------S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~ 80 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-------------SKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 80 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHT-------------CSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHc-------------CCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHH
Confidence 455666777776644 68899999999987 333678999999999887766 37889999999
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHH
Q 005877 514 YYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLG 547 (672)
Q Consensus 514 y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg 547 (672)
|+ ..+||++|+++++++++ ++|.+|..-.-
T Consensus 81 ~~----kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~ 112 (152)
T 1pc2_A 81 NY----RLKEYEKALKYVRGLLQTEPQNNQAKELER 112 (152)
T ss_dssp HH----HTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HH----HccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 99 89999999999999976 57888754443
No 214
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.45 E-value=0.00024 Score=57.43 Aligned_cols=70 Identities=9% Similarity=-0.058 Sum_probs=59.2
Q ss_pred hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 005877 120 MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIA 190 (672)
Q Consensus 120 ~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~ 190 (672)
++.+++.+..+|.++.. .+.....++|..++++++. ++++.+++.||..+...|++++|+.+|+++++..
T Consensus 2 ~p~~~~~~~~~a~al~~-~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 2 NAVTATQLAAKATTLYY-LHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCCHHHHHHHHHHHHH-TTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 46789999999998754 1113457999999999876 8999999999999999999999999999998754
No 215
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.44 E-value=0.0035 Score=61.06 Aligned_cols=106 Identities=12% Similarity=0.108 Sum_probs=83.8
Q ss_pred CCCHHHHHHHHHHHHc-------CCCchhcHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCC-CccCCHHHHHHHHH
Q 005877 349 NEEAGGHYNLGVMYYK-------GIGVKRDVKLACKYFLVAANAGH----QKAFYQLAKMFHTGV-GLKKNLHMATALYK 416 (672)
Q Consensus 349 ~~~~~a~~~Lg~~y~~-------g~g~~~~~~~A~~~~~~A~~~~~----~~a~~~L~~~y~~g~-g~~~~~~~A~~~~~ 416 (672)
.++++++++.|..+.. |.+......+|...+++|++.+. ..++..||.+|..-- ..-|+.++|..+|+
T Consensus 149 ~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fe 228 (301)
T 3u64_A 149 RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFE 228 (301)
T ss_dssp GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHH
Confidence 3578888888876643 24567788999999999988653 458999999998611 11379999999999
Q ss_pred HHHHcCC---hhHHHHHHHHHHh-cCCHHHHHHHHHHHHHcC
Q 005877 417 LVAERGP---WSSLSRWALESYL-KGDVGKAFLLYSRMAELG 454 (672)
Q Consensus 417 ~a~~~~~---~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~g 454 (672)
+|++.+| ..+.+..|..+.. .|++++|..++++++...
T Consensus 229 rAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 229 HLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAID 270 (301)
T ss_dssp HHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 9999885 6678888888877 499999999999998754
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.41 E-value=0.0017 Score=65.90 Aligned_cols=65 Identities=12% Similarity=-0.033 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC
Q 005877 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG-HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP 423 (672)
Q Consensus 351 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 423 (672)
++.++.-++.++.. .+++++|+.++++|+..+ +..++..+|.++.. .|+.++|++.|++|+..+|
T Consensus 276 ~a~~~~alal~~l~----~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~----~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 276 LSIIYQIKAVSALV----KGKTDESYQAINTGIDLEMSWLNYVLLGKVYEM----KGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCC
Confidence 34444444444444 445555555555554433 23333444555544 5555555555555555544
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.40 E-value=0.00027 Score=74.70 Aligned_cols=79 Identities=14% Similarity=0.069 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHhC-------CC---HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc-----C--CH---HHHHH
Q 005877 334 KNYTKAKEYFEKAADN-------EE---AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-----G--HQ---KAFYQ 393 (672)
Q Consensus 334 ~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-----~--~~---~a~~~ 393 (672)
|++++|+.+++++++. ++ ..++.+||.+|.. .|++++|+.+|+++++. | |+ .++++
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~----~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 387 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY----MQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK 387 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 4777777777777653 12 3456677777777 67777777777776541 1 22 34556
Q ss_pred HHHHHHcCCCccCCHHHHHHHHHHHHH
Q 005877 394 LAKMFHTGVGLKKNLHMATALYKLVAE 420 (672)
Q Consensus 394 L~~~y~~g~g~~~~~~~A~~~~~~a~~ 420 (672)
||.+|.. ++++++|+.+|++|++
T Consensus 388 La~~~~~----qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 388 LGRLYMG----LENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHh----ccCHHHHHHHHHHHHH
Confidence 6666655 5566666665555543
No 218
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.35 E-value=0.022 Score=61.45 Aligned_cols=153 Identities=10% Similarity=0.071 Sum_probs=78.5
Q ss_pred hhhccCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCC----CcccCHHHHHHHHHHHHHcC---CHHHHHHHHHH
Q 005877 219 LRKSRGEDDEAFQILEYQAQKG---NAGAMYKIGLFYYFGLR----GLRRDRTKALMWFSKAADKG---EPQSMEFLGEI 288 (672)
Q Consensus 219 ~~~~~g~~~~Ai~~~~~aa~~~---~~~a~~~Lg~~y~~~~~----~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~ 288 (672)
.+.+.|+.++|++.|+++.+.| +...+..|-..+...+. ...++.++|.+.|++....| +...+..|-..
T Consensus 35 ~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~ 114 (501)
T 4g26_A 35 MCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARL 114 (501)
T ss_dssp HTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4456677777777777766655 44455555444433311 01123556666666555543 44555555555
Q ss_pred HHcCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Q 005877 289 YARGAGVERNYTKALEWLTHAARQQ---LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE---EAGGHYNLGVMY 362 (672)
Q Consensus 289 y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y 362 (672)
|.. .++.++|..+|++..+.| +...++.|=..|.. .|+.++|.+.|++..+.| +...+..|-..|
T Consensus 115 ~~~----~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~-----~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 115 AVA----KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR-----KGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHH----HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHh----cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH-----CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 555 555556655555555443 44444444444433 345555555555555543 344444444444
Q ss_pred HcCCCchhcHHHHHHHHHHHHH
Q 005877 363 YKGIGVKRDVKLACKYFLVAAN 384 (672)
Q Consensus 363 ~~g~g~~~~~~~A~~~~~~A~~ 384 (672)
.+ .|+.++|.+.|++..+
T Consensus 186 ~~----~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 186 MD----TKNADKVYKTLQRLRD 203 (501)
T ss_dssp HH----TTCHHHHHHHHHHHHH
T ss_pred hh----CCCHHHHHHHHHHHHH
Confidence 44 4555555555555443
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.34 E-value=0.00035 Score=73.77 Aligned_cols=80 Identities=14% Similarity=0.056 Sum_probs=67.7
Q ss_pred cCCHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC-------CC---HHHH
Q 005877 296 ERNYTKALEWLTHAARQ-------QL---YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-------EE---AGGH 355 (672)
Q Consensus 296 ~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~-------~~---~~a~ 355 (672)
.+++++|+..|+++++. ++ ..++++||.+|.. +|++++|+.+++++++. ++ +.++
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~-----~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 385 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY-----MQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW 385 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh-----hcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 67899999999999863 23 3568899999986 78999999999999874 23 4578
Q ss_pred HHHHHHHHcCCCchhcHHHHHHHHHHHHH
Q 005877 356 YNLGVMYYKGIGVKRDVKLACKYFLVAAN 384 (672)
Q Consensus 356 ~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 384 (672)
++||.+|.. .|++++|..+|++|++
T Consensus 386 ~nLa~~~~~----qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 386 LKLGRLYMG----LENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh----ccCHHHHHHHHHHHHH
Confidence 899999999 9999999999999976
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.13 E-value=0.0031 Score=66.54 Aligned_cols=80 Identities=9% Similarity=0.000 Sum_probs=52.2
Q ss_pred cCCHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC-------CC---HHHH
Q 005877 296 ERNYTKALEWLTHAARQ-------QL---YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-------EE---AGGH 355 (672)
Q Consensus 296 ~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~-------~~---~~a~ 355 (672)
++++++|+..++++++. .+ ..++.+||.+|.. +|++++|+.+++++++. ++ +..+
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~-----~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN-----LGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh-----hccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 56777777777777653 12 3456677777764 56777777777777653 22 3456
Q ss_pred HHHHHHHHcCCCchhcHHHHHHHHHHHHH
Q 005877 356 YNLGVMYYKGIGVKRDVKLACKYFLVAAN 384 (672)
Q Consensus 356 ~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 384 (672)
++||.+|.. .|++++|..+|++|++
T Consensus 375 ~nLa~~~~~----~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLH----QGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHH
Confidence 677777777 6777777777777754
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.09 E-value=0.0018 Score=68.32 Aligned_cols=80 Identities=8% Similarity=-0.068 Sum_probs=53.2
Q ss_pred cCCHHHHHHHHHHHHhC-------CC---HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc-------CCH---HHHH
Q 005877 333 KKNYTKAKEYFEKAADN-------EE---AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-------GHQ---KAFY 392 (672)
Q Consensus 333 ~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-------~~~---~a~~ 392 (672)
++++++|+..++++++. ++ ..++.+||.+|.. .|++++|+.+++++++. .|+ ..++
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~----~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN----LGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 35888888888888764 12 4566778888877 77888888888877651 232 4556
Q ss_pred HHHHHHHcCCCccCCHHHHHHHHHHHHH
Q 005877 393 QLAKMFHTGVGLKKNLHMATALYKLVAE 420 (672)
Q Consensus 393 ~L~~~y~~g~g~~~~~~~A~~~~~~a~~ 420 (672)
+||.+|.. ++++++|+.+|++|++
T Consensus 376 nLa~~~~~----~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLH----QGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHh----cCCHHHHHHHHHHHHH
Confidence 66666665 5666666666665543
No 222
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.04 E-value=0.48 Score=50.74 Aligned_cols=326 Identities=11% Similarity=-0.050 Sum_probs=163.5
Q ss_pred cCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhC-CChHHHHHHHH-HhhcCCcccCCHHHHHHHHHHHHh-----C
Q 005877 85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESAAME-GDPHARSVLGF-LYGMGMMRERNKGKAFLYHHFAAE-----G 157 (672)
Q Consensus 85 ~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~-~y~~G~g~~~d~~~A~~~~~~A~~-----~ 157 (672)
+...|..++..+- .++++.+..+|+++... .+.+.+..... .-.. + ...+.....|++|+. .
T Consensus 14 aR~vyer~l~~~P-------~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~--~--~~~~~i~~~fe~al~~vg~d~ 82 (493)
T 2uy1_A 14 PSAIMEHARRLYM-------SKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKV--S--QKKFKLYEVYEFTLGQFENYW 82 (493)
T ss_dssp HHHHHHHHHHHHH-------TTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH--C------CTHHHHHHHHHHSTTCT
T ss_pred HHHHHHHHHHHCC-------CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh--C--chHHHHHHHHHHHHHHcCCCc
Confidence 4445556665552 16788888888887664 34554433222 2222 1 123455667777775 2
Q ss_pred CCHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccch----hc---ccCchhhhhHhhhccCCh
Q 005877 158 GNIQSKMAVAYTYL----RQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPI----RI---HNGAEENKGALRKSRGED 226 (672)
Q Consensus 158 ~~~~a~~~Lg~~y~----~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~----~l---~~~~~~~~~~~~~~~g~~ 226 (672)
.+..........+. .+++.+.+...|++++.. |. .....+ .. ..+.......+....+.+
T Consensus 83 ~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~--------~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y 153 (493)
T 2uy1_A 83 DSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PM--------GSLSELWKDFENFELELNKITGKKIVGDTLPIF 153 (493)
T ss_dssp TCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CC--------TTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hh--------hhHHHHHHHHHHHHHHhccccHHHHHHHHhHHH
Confidence 34444444444433 245677788888888752 10 000000 00 000000000011111233
Q ss_pred HHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCccc--CHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCH
Q 005877 227 DEAFQILEYQAQK---GNAGAMYKIGLFYYFGLRGLRR--DRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNY 299 (672)
Q Consensus 227 ~~Ai~~~~~aa~~---~~~~a~~~Lg~~y~~~~~~~~~--~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~ 299 (672)
..|...++.+... .+...+......-.....+... ..++....|++++. +..+..+...+..+.. .++.
T Consensus 154 ~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~----~~~~ 229 (493)
T 2uy1_A 154 QSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIG----IGQK 229 (493)
T ss_dssp HHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----TTCH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCH
Confidence 3344344433221 1222232222221111001111 14566788999887 4678888888888887 7899
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC------------CCHHHHHHHHHHHHcCCC
Q 005877 300 TKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN------------EEAGGHYNLGVMYYKGIG 367 (672)
Q Consensus 300 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~------------~~~~a~~~Lg~~y~~g~g 367 (672)
++|...|++|+... ......+...... +. ++...-+..+... .....+...+.....
T Consensus 230 ~~ar~i~erAi~~P-~~~~l~~~y~~~~----e~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r--- 298 (493)
T 2uy1_A 230 EKAKKVVERGIEMS-DGMFLSLYYGLVM----DE---EAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK--- 298 (493)
T ss_dssp HHHHHHHHHHHHHC-CSSHHHHHHHHHT----TC---THHHHHHHHHTC----------CHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHhhc----ch---hHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH---
Confidence 99999999998762 1112222211111 01 1111111111100 012344555555555
Q ss_pred chhcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh--hHHHHHHHHHHhcCCHHHH
Q 005877 368 VKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW--SSLSRWALESYLKGDVGKA 443 (672)
Q Consensus 368 ~~~~~~~A~~~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~~~~~g~~~~A 443 (672)
.++.+.|...|++| +.. ....+...+.+-.. ..++.+.|...|+++++..+. ......+......|+.+.|
T Consensus 299 -~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~---~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~a 373 (493)
T 2uy1_A 299 -KRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYY---ATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENA 373 (493)
T ss_dssp -HHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHH---HHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred -cCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHH---HCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 66789999999998 422 23333333444332 134788999999999886643 2233344445567888888
Q ss_pred HHHHHHH
Q 005877 444 FLLYSRM 450 (672)
Q Consensus 444 ~~~~~~a 450 (672)
...|+++
T Consensus 374 R~l~er~ 380 (493)
T 2uy1_A 374 RALFKRL 380 (493)
T ss_dssp HHHHHHS
T ss_pred HHHHHHH
Confidence 8888887
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.63 E-value=0.026 Score=47.53 Aligned_cols=89 Identities=9% Similarity=0.032 Sum_probs=71.2
Q ss_pred hHhHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHcCCCCCC
Q 005877 485 AERHQCAHSLWWQASE--QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNA----QAMFNLGYMHEHGQGLPL 558 (672)
Q Consensus 485 ~~~~~~A~~~~~~a~~--~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~~~----~a~~~Lg~~y~~g~g~~~ 558 (672)
......+...|..... ....++.++++|++... ....|..+++..++..+..++| +.+|.||..|.+ .|
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S-~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk----lg 88 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRT-RYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR----LK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTS-SSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH----hh
Confidence 4456667777776655 45699999999999842 1344566799999998876543 789999999998 89
Q ss_pred CHHHHHHHHHHHHhcCCCCc
Q 005877 559 DLHLAKRYYDQALEVDPAAK 578 (672)
Q Consensus 559 d~~~A~~~~~~A~~~~~~~~ 578 (672)
||.+|+++.+..++..|+..
T Consensus 89 ~Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 89 EYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999864
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.60 E-value=0.033 Score=46.96 Aligned_cols=89 Identities=17% Similarity=0.123 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC----HHHHHHHHHH
Q 005877 440 VGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN----EHAALLIGDA 513 (672)
Q Consensus 440 ~~~A~~~~~~a~~~g--~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~a~~~lG~~ 513 (672)
...+...|.+..+.| ...+.+++||.|-+ +....+..+++.+++...+.++ -+.+|.||..
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~-------------S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg 83 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-------------TRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 83 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT-------------SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHc-------------CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 455666777776644 68889999999977 3447788999999998877764 4678999999
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHH
Q 005877 514 YYYGRGTQRDYERAAEAYMHARS--QSNAQAMFN 545 (672)
Q Consensus 514 y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~ 545 (672)
++ ..++|.+|.++.+..++ ++|.+|..-
T Consensus 84 ~y----klg~Y~~A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 84 NY----RLKEYEKALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HH----HTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HH----HhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99 89999999999999866 578877543
No 225
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.03 E-value=0.16 Score=43.59 Aligned_cols=93 Identities=10% Similarity=0.029 Sum_probs=72.6
Q ss_pred CCchHhHHHHHHHHHHH-HhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHcCCCCC
Q 005877 482 CTDAERHQCAHSLWWQA-SEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ---SNAQAMFNLGYMHEHGQGLP 557 (672)
Q Consensus 482 ~~~~~~~~~A~~~~~~a-~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~a~~~Lg~~y~~g~g~~ 557 (672)
+...+++....+-|.+- ...-.+++.++++|++.... ...|..+++..++..... ..-+.+|.|+.-|.+ .
T Consensus 16 ~l~~eeL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~-~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~yk----l 90 (144)
T 1y8m_A 16 PLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKST-DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK----L 90 (144)
T ss_dssp CCCHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSS-SHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHT----T
T ss_pred CCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHH----h
Confidence 33466666666666653 23456899999999998432 355677999999998763 356899999999998 9
Q ss_pred CCHHHHHHHHHHHHhcCCCCcc
Q 005877 558 LDLHLAKRYYDQALEVDPAAKL 579 (672)
Q Consensus 558 ~d~~~A~~~~~~A~~~~~~~~~ 579 (672)
|||.+|++|.+..++..|+..-
T Consensus 91 ~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 91 GEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TCHHHHHHHHHHHHHTCCCCHH
T ss_pred hhHHHHHHHHHHHHhcCCCcHH
Confidence 9999999999999999998743
No 226
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.86 E-value=0.2 Score=42.35 Aligned_cols=93 Identities=10% Similarity=0.029 Sum_probs=72.2
Q ss_pred CCchHhHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHcCCCCC
Q 005877 482 CTDAERHQCAHSLWWQAS-EQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ---SNAQAMFNLGYMHEHGQGLP 557 (672)
Q Consensus 482 ~~~~~~~~~A~~~~~~a~-~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~a~~~Lg~~y~~g~g~~ 557 (672)
+...+++....+-|..-. ..-.+.+.++++|++.... ...|..+++..++...+. ..-+.+|.|+.-|.+ .
T Consensus 17 ~~~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~-~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yk----l 91 (134)
T 3o48_A 17 PLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKST-DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK----L 91 (134)
T ss_dssp CCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH----H
T ss_pred CCCHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH----h
Confidence 344667777777776532 2235899999999998542 345778999999888764 246789999999998 8
Q ss_pred CCHHHHHHHHHHHHhcCCCCcc
Q 005877 558 LDLHLAKRYYDQALEVDPAAKL 579 (672)
Q Consensus 558 ~d~~~A~~~~~~A~~~~~~~~~ 579 (672)
||+.+|++|-+..++..|+..-
T Consensus 92 gdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 92 GEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHH
T ss_pred hhHHHHHHHHHHHHhhCCCCHH
Confidence 9999999999999999999753
No 227
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.59 E-value=0.31 Score=41.71 Aligned_cols=74 Identities=16% Similarity=0.117 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 005877 454 GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG---NEHAALLIGDAYYYGRGTQRDYERAAEA 530 (672)
Q Consensus 454 g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lG~~y~~g~g~~~d~~~A~~~ 530 (672)
-...+.+++||.|-+ +....+..+++.+++.....+ .-+-+|.|+.-++ +.+||.+|.++
T Consensus 37 vs~~t~F~YAw~Lv~-------------S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~y----kl~~Y~~Ar~y 99 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIK-------------STDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCY----KLGEYSMAKRY 99 (144)
T ss_dssp SCHHHHHHHHHHHHH-------------SSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHH----TTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHc-------------CCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHH----HhhhHHHHHHH
Confidence 367889999999988 444788999999999765433 3678899999999 99999999999
Q ss_pred HHHHHh--cCCHHHHH
Q 005877 531 YMHARS--QSNAQAMF 544 (672)
Q Consensus 531 ~~~A~~--~~~~~a~~ 544 (672)
.+..++ ++|.+|..
T Consensus 100 ~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 100 VDTLFEHERNNKQVGA 115 (144)
T ss_dssp HHHHHHTCCCCHHHHH
T ss_pred HHHHHhcCCCcHHHHH
Confidence 999876 46777743
No 228
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.55 E-value=0.2 Score=42.32 Aligned_cols=73 Identities=16% Similarity=0.119 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 005877 455 YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN---EHAALLIGDAYYYGRGTQRDYERAAEAY 531 (672)
Q Consensus 455 ~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~a~~~lG~~y~~g~g~~~d~~~A~~~~ 531 (672)
.+.+.+++||.+.+ +....+..+++.+++...+.++ -+-+|.|+.-++ ..+||++|.++.
T Consensus 39 s~qt~F~yAw~Lv~-------------S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~y----klgdY~~Ar~y~ 101 (134)
T 3o48_A 39 TIQSRFNYAWGLIK-------------STDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCY----KLGEYSMAKRYV 101 (134)
T ss_dssp CHHHHHHHHHHHHH-------------SSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH----HHTCHHHHHHHH
T ss_pred ChhhHHHHHHHHHc-------------CCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHH----HhhhHHHHHHHH
Confidence 67889999999988 4447789999999997665443 677899999999 899999999999
Q ss_pred HHHHh--cCCHHHHH
Q 005877 532 MHARS--QSNAQAMF 544 (672)
Q Consensus 532 ~~A~~--~~~~~a~~ 544 (672)
+..++ ++|.+|..
T Consensus 102 d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 102 DTLFEHERNNKQVGA 116 (134)
T ss_dssp HHHHTTCTTCHHHHH
T ss_pred HHHHhhCCCCHHHHH
Confidence 99977 46777743
No 229
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.55 E-value=0.094 Score=46.28 Aligned_cols=122 Identities=13% Similarity=0.086 Sum_probs=69.7
Q ss_pred cCCHHHHHHHHHHHHh--CCCH---------HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcc
Q 005877 141 ERNKGKAFLYHHFAAE--GGNI---------QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIH 209 (672)
Q Consensus 141 ~~d~~~A~~~~~~A~~--~~~~---------~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~ 209 (672)
.+-|+.|+....+++. ..++ ..+..+|..+...++|..|..+|++++............. ..+..
T Consensus 33 ~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~---~~~~~- 108 (167)
T 3ffl_A 33 AGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR---PSTGN- 108 (167)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------------
T ss_pred hhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc---ccccc-
Confidence 5567777777777543 1222 4778899999999999999999999887654211110000 00000
Q ss_pred cCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHH-HHcCCHHHHHHHHHH
Q 005877 210 NGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKA-ADKGEPQSMEFLGEI 288 (672)
Q Consensus 210 ~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a-~~~~~~~a~~~Lg~~ 288 (672)
........ ....+.+..|.++.+|... +++++|+..++.. .+...+.....||.+
T Consensus 109 -------------~ss~p~s~------~~~~e~Elkykia~C~~~l-----~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakL 164 (167)
T 3ffl_A 109 -------------SASTPQSQ------CLPSEIEVKYKLAECYTVL-----KQDKDAIAILDGIPSRQRTPKINMLLANL 164 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHT-----TCHHHHHHHHHTSCGGGCCHHHHHHHHHH
T ss_pred -------------cCCCcccc------cccchHHHHHHHHHHHHHH-----CCHHHHHHHHhcCCchhcCHHHHHHHHHH
Confidence 00000000 0013556677777777776 4777777777764 344667777777776
Q ss_pred HH
Q 005877 289 YA 290 (672)
Q Consensus 289 y~ 290 (672)
|.
T Consensus 165 y~ 166 (167)
T 3ffl_A 165 YK 166 (167)
T ss_dssp CC
T ss_pred hc
Confidence 64
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.00 E-value=1.7 Score=38.84 Aligned_cols=97 Identities=11% Similarity=0.061 Sum_probs=54.5
Q ss_pred cCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhh
Q 005877 141 ERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALR 220 (672)
Q Consensus 141 ~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 220 (672)
.++++.|.+..+.. ++..-+..||..-+..|+++-|..+|+++-+. ..+..+|
T Consensus 18 lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~------------------------~~L~~Ly 70 (177)
T 3mkq_B 18 YGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQHSF------------------------DKLSFLY 70 (177)
T ss_dssp TTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH------------------------HHHHHHH
T ss_pred cCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH------------------------HHHHHHH
Confidence 45566665554432 55556666666666666666666666664221 1244455
Q ss_pred hccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHH
Q 005877 221 KSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSK 272 (672)
Q Consensus 221 ~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~ 272 (672)
...|+.++-...-+.+...|+....+...... +|++++++.|.+
T Consensus 71 ~~tg~~e~L~kla~iA~~~g~~n~af~~~l~l--------Gdv~~~i~lL~~ 114 (177)
T 3mkq_B 71 LVTGDVNKLSKMQNIAQTREDFGSMLLNTFYN--------NSTKERSSIFAE 114 (177)
T ss_dssp HHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--------TCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHCccHHHHHHHHHHc--------CCHHHHHHHHHH
Confidence 55566555555555555556655555443222 377888777754
No 231
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.68 E-value=0.51 Score=41.60 Aligned_cols=98 Identities=8% Similarity=0.004 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHH
Q 005877 242 AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-----GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYS 316 (672)
Q Consensus 242 ~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~ 316 (672)
..+++.+|..++.. ++|.+|...|++|++. ..+.+...++ + ...+..... ...+.+
T Consensus 63 ~~~l~~ladalf~~-----~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~-~-------~ss~p~s~~------~~~e~E 123 (167)
T 3ffl_A 63 YQLLVYHADSLFHD-----KEYRNAVSKYTMALQQKKALSKTSKVRPSTG-N-------SASTPQSQC------LPSEIE 123 (167)
T ss_dssp HHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHCC----------------------------C------CCCHHH
T ss_pred HHHHHHHHHHHHcc-----cHHHHHHHHHHHHHHHHHHHhcCCCcccccc-c-------cCCCccccc------ccchHH
Confidence 35788999999988 5999999999999763 1221111111 0 011111000 113457
Q ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHH-HhCCCHHHHHHHHHHHH
Q 005877 317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKA-ADNEEAGGHYNLGVMYY 363 (672)
Q Consensus 317 a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a-~~~~~~~a~~~Lg~~y~ 363 (672)
..+.++.||.. .+++++|+..++.. .+.-.+.....||.+|.
T Consensus 124 lkykia~C~~~-----l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 124 VKYKLAECYTV-----LKQDKDAIAILDGIPSRQRTPKINMLLANLYK 166 (167)
T ss_dssp HHHHHHHHHHH-----TTCHHHHHHHHHTSCGGGCCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHH-----HCCHHHHHHHHhcCCchhcCHHHHHHHHHHhc
Confidence 77888888887 45888888888876 55668888888888764
No 232
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.44 E-value=4.2 Score=46.02 Aligned_cols=41 Identities=24% Similarity=0.241 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHH
Q 005877 262 DRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHA 309 (672)
Q Consensus 262 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a 309 (672)
+++.|.+..+ ...++..+..||.++.. .++++.|+..|.++
T Consensus 667 ~~~~A~~~~~---~~~~~~~W~~la~~al~----~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 667 QLTLARDLLT---DESAEMKWRALGDASLQ----RFNFKLAIEAFTNA 707 (814)
T ss_dssp CHHHHHHHHT---TCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHH
T ss_pred CHHHHHHHHH---hhCcHhHHHHHHHHHHH----cCCHHHHHHHHHHc
Confidence 5555555432 23455555566666665 56666666666543
No 233
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.01 E-value=14 Score=41.73 Aligned_cols=129 Identities=16% Similarity=0.124 Sum_probs=72.9
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005877 283 EFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMY 362 (672)
Q Consensus 283 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y 362 (672)
..+..++.. .+..+.|+...+ ++...+.+... .+++++|.+..+ ..+++..+..||.++
T Consensus 633 ~~~~~~l~~----~~~~~~a~~~~~------~~~~~f~~~l~--------~~~~~~A~~~~~---~~~~~~~W~~la~~a 691 (814)
T 3mkq_A 633 TKIARFLEG----QEYYEEALNISP------DQDQKFELALK--------VGQLTLARDLLT---DESAEMKWRALGDAS 691 (814)
T ss_dssp HHHHHHHHH----TTCHHHHHHHCC------CHHHHHHHHHH--------HTCHHHHHHHHT---TCCCHHHHHHHHHHH
T ss_pred HHHHHHHHh----CCChHHheecCC------Ccchheehhhh--------cCCHHHHHHHHH---hhCcHhHHHHHHHHH
Confidence 344445555 666777665543 33333333322 248888877643 456788888999999
Q ss_pred HcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHH
Q 005877 363 YKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGK 442 (672)
Q Consensus 363 ~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~ 442 (672)
.+ .++++.|..+|.++ ++.... ..+|.. .++.++....-+.+...+...... ..+...|++++
T Consensus 692 l~----~~~~~~A~~~y~~~---~d~~~l---~~l~~~----~~~~~~~~~~~~~a~~~~~~~~A~---~~~~~~g~~~~ 754 (814)
T 3mkq_A 692 LQ----RFNFKLAIEAFTNA---HDLESL---FLLHSS----FNNKEGLVTLAKDAETTGKFNLAF---NAYWIAGDIQG 754 (814)
T ss_dssp HH----TTCHHHHHHHHHHH---TCHHHH---HHHHHH----TTCHHHHHHHHHHHHHTTCHHHHH---HHHHHHTCHHH
T ss_pred HH----cCCHHHHHHHHHHc---cChhhh---HHHHHH----cCCHHHHHHHHHHHHHcCchHHHH---HHHHHcCCHHH
Confidence 88 88999999998875 443332 223332 345555444444444443332211 12344667777
Q ss_pred HHHHHHH
Q 005877 443 AFLLYSR 449 (672)
Q Consensus 443 A~~~~~~ 449 (672)
|++.|.+
T Consensus 755 a~~~~~~ 761 (814)
T 3mkq_A 755 AKDLLIK 761 (814)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666653
No 234
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.66 E-value=22 Score=40.58 Aligned_cols=259 Identities=15% Similarity=0.082 Sum_probs=152.4
Q ss_pred CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH---cCC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 005877 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD---KGE----PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ 312 (672)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~---~~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 312 (672)
+...+...||.++. ++.++++..+.+.+. .++ ..|.+.||.++.. .+ .+++.++...+..
T Consensus 374 ~k~sA~aSLGlIh~-------g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag----~~--~~~~~lL~~~L~~ 440 (963)
T 4ady_A 374 AKFTATASLGVIHK-------GNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAG----FG--RDTTDYLKNIIVE 440 (963)
T ss_dssp HHHHHHHHHHHHTS-------SCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTT----TT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcc-------CchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCC----Cc--HHHHHHHHHHHcC
Confidence 35678888998875 255677888877765 233 4678888888864 33 3688888887765
Q ss_pred CC--------H----HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCH----HHHHHHHHHHHcCCCchhcHHHHH
Q 005877 313 QL--------Y----SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEA----GGHYNLGVMYYKGIGVKRDVKLAC 376 (672)
Q Consensus 313 ~~--------~----~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~----~a~~~Lg~~y~~g~g~~~~~~~A~ 376 (672)
++ . .+...||.+|.- .++ +++++.+...+..+++ .+-+.||.++.. .++.+-..
T Consensus 441 ~~~~~~~~~~~~ir~gAaLGLGla~~G-----S~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vG----Tgn~~ai~ 510 (963)
T 4ady_A 441 NSGTSGDEDVDVLLHGASLGIGLAAMG-----SAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLG----TGKPEAIH 510 (963)
T ss_dssp HSSCCSCHHHHHHHHHHHHHHHHHSTT-----CCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT----CCCHHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHHhcC-----CCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc----cCCHHHHH
Confidence 43 1 356688888862 223 6788888888776654 355677888765 66655555
Q ss_pred HHHHHHHHcCCHHHH----HHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChh----HHHHHHHHHHhcCCHHHHHHHHH
Q 005877 377 KYFLVAANAGHQKAF----YQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS----SLSRWALESYLKGDVGKAFLLYS 448 (672)
Q Consensus 377 ~~~~~A~~~~~~~a~----~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~----a~~~lg~~~~~~g~~~~A~~~~~ 448 (672)
..+..+.+..+.... .-||.++ .++.+.+-...+......++. +..-+|..|...|+...-...+.
T Consensus 511 ~LL~~~~e~~~e~vrR~aalgLGll~------~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~ 584 (963)
T 4ady_A 511 DMFTYSQETQHGNITRGLAVGLALIN------YGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLH 584 (963)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHT------TTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHHhccCcHHHHHHHHHHHHhhh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 555555554444322 2333332 345555555555555545543 34567888889999765555777
Q ss_pred HHHHcCCHHHHH----HHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHH----HHHHHHHhCCCC
Q 005877 449 RMAELGYEVAQS----NAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAAL----LIGDAYYYGRGT 520 (672)
Q Consensus 449 ~a~~~g~~~a~~----nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~----~lG~~y~~g~g~ 520 (672)
.+.+........ .+|.+.. + +.+.+...+....+.+++...+ .||.+.. .
T Consensus 585 ~~~~d~~d~VRraAViaLGlI~~--g----------------~~e~v~rlv~~L~~~~d~~VR~gAalALGli~a----G 642 (963)
T 4ady_A 585 VAVSDSNDDVRRAAVIALGFVLL--R----------------DYTTVPRIVQLLSKSHNAHVRCGTAFALGIACA----G 642 (963)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHTS--S----------------SCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTS----S
T ss_pred HhccCCcHHHHHHHHHHHHhhcc--C----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc----C
Confidence 776554443322 2333321 1 1122333333344556665544 4555443 2
Q ss_pred CCCHHHHHHHHHHHHhcCCH----HHHHHHHHHH
Q 005877 521 QRDYERAAEAYMHARSQSNA----QAMFNLGYMH 550 (672)
Q Consensus 521 ~~d~~~A~~~~~~A~~~~~~----~a~~~Lg~~y 550 (672)
.+ ..+++..+.+...-.+. .|...||.+-
T Consensus 643 n~-~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 643 KG-LQSAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp SC-CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred CC-cHHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 22 26788888888764442 3677778774
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.76 E-value=3 Score=36.06 Aligned_cols=100 Identities=12% Similarity=0.073 Sum_probs=68.5
Q ss_pred HhCCCHHHHHHHHHHHHcCCCchhcH------HHHHHHHHHHHHcCCH----------HHHHHHHHHHHcCCCccCCHHH
Q 005877 347 ADNEEAGGHYNLGVMYYKGIGVKRDV------KLACKYFLVAANAGHQ----------KAFYQLAKMFHTGVGLKKNLHM 410 (672)
Q Consensus 347 ~~~~~~~a~~~Lg~~y~~g~g~~~~~------~~A~~~~~~A~~~~~~----------~a~~~L~~~y~~g~g~~~~~~~ 410 (672)
+...+++.+........+ .++. ++-++.|++|+..-++ ..+.+.+.. .. .+|.++
T Consensus 8 ~~p~~yd~W~~yl~llE~----~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~e----i~D~d~ 78 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEK----NSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KA----IQEPDD 78 (161)
T ss_dssp --CCSHHHHHHHHHHHHH----HTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HH----HHCGGG
T ss_pred eCCCCHHHHHHHHHHHHH----cCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HH----hcCHHH
Confidence 445677777777777766 5565 7777888888763322 233344433 22 489999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCC
Q 005877 411 ATALYKLVAERGPWSSLSRWALE--SYLKGDVGKAFLLYSRMAELGY 455 (672)
Q Consensus 411 A~~~~~~a~~~~~~~a~~~lg~~--~~~~g~~~~A~~~~~~a~~~g~ 455 (672)
|...|+.++.....-+..+++.+ -..+|+..+|...+.+|+.++.
T Consensus 79 aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 79 ARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp CHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 99999999877533355555544 4478999999999999999874
No 236
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=90.14 E-value=9.8 Score=33.91 Aligned_cols=76 Identities=12% Similarity=0.065 Sum_probs=35.2
Q ss_pred hcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005877 370 RDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSR 449 (672)
Q Consensus 370 ~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 449 (672)
|+++.|.+..+. .++..-|..||..... .++++-|..+|+++-+ +..+-..|...|+.++-...-+.
T Consensus 19 g~l~~A~e~a~~---l~~~~~Wk~Lg~~AL~----~gn~~lAe~cy~~~~D------~~~L~~Ly~~tg~~e~L~kla~i 85 (177)
T 3mkq_B 19 GNLDAALDEAKK---LNDSITWERLIQEALA----QGNASLAEMIYQTQHS------FDKLSFLYLVTGDVNKLSKMQNI 85 (177)
T ss_dssp TCHHHHHHHHHH---HCCHHHHHHHHHHHHH----TTCHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH---hCCHHHHHHHHHHHHH----cCChHHHHHHHHHhCC------HHHHHHHHHHhCCHHHHHHHHHH
Confidence 455555544332 2455555555555554 5555555555554421 12223333344554444444444
Q ss_pred HHHcCCHHH
Q 005877 450 MAELGYEVA 458 (672)
Q Consensus 450 a~~~g~~~a 458 (672)
|...|....
T Consensus 86 A~~~g~~n~ 94 (177)
T 3mkq_B 86 AQTREDFGS 94 (177)
T ss_dssp HHHTTCHHH
T ss_pred HHHCccHHH
Confidence 444444333
No 237
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.03 E-value=25 Score=35.84 Aligned_cols=89 Identities=22% Similarity=0.175 Sum_probs=55.6
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CCH----HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC-----
Q 005877 283 EFLGEIYARGAGVERNYTKALEWLTHAARQ----QLY----SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----- 349 (672)
Q Consensus 283 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~----~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----- 349 (672)
..||.+|.. .+++.+|.+.+.+..+. ++. +.+..-..+|.. .+|+.++..++.+|...
T Consensus 103 ~kL~~l~~~----~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~-----~~n~~k~k~~l~~a~~~~~ai~ 173 (394)
T 3txn_A 103 ARLIALYFD----TALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA-----LSNLPKARAALTSARTTANAIY 173 (394)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHH----hhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH-----hccHHHHHHHHHHHHhhhccCC
Confidence 467788887 78888888777776642 221 222333344543 45888888888777432
Q ss_pred CCHHHH----HHHHHHHH-cCCCchhcHHHHHHHHHHHHH
Q 005877 350 EEAGGH----YNLGVMYY-KGIGVKRDVKLACKYFLVAAN 384 (672)
Q Consensus 350 ~~~~a~----~~Lg~~y~-~g~g~~~~~~~A~~~~~~A~~ 384 (672)
.+|..+ ..-|.++. . .+||.+|..+|-.+.+
T Consensus 174 ~~p~i~a~i~~~~Gi~~l~~----~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 174 CPPKVQGALDLQSGILHAAD----ERDFKTAFSYFYEAFE 209 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHT----TSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhHHHHHh----ccCHHHHHHHHHHHHh
Confidence 233322 34466777 6 7888888888887753
No 238
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=85.76 E-value=21 Score=36.36 Aligned_cols=157 Identities=12% Similarity=0.066 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CCHH---HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh----
Q 005877 280 QSMEFLGEIYARGAGVERNYTKALEWLTHAARQ----QLYS---AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAAD---- 348 (672)
Q Consensus 280 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~---a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~---- 348 (672)
.+.+.||.+|.. .+++++-..++.....- +-+. ....|=..+.. ..+..+.=++....+++
T Consensus 20 ~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~----~~~~~~~~~~~~~~~~~~a~~ 91 (394)
T 3txn_A 20 QGILQQGELYKQ----EGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLD----MDAGTGIEVQLCKDCIEWAKQ 91 (394)
T ss_dssp HHHHHHHHHHHH----HTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTT----SCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHHHHH
Confidence 345778888887 78887777777654321 1111 11122222221 12234444444444443
Q ss_pred CCCH----HHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCccCCHHHHHHHHH
Q 005877 349 NEEA----GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH----QKAFYQLAKMFHTGVGLKKNLHMATALYK 416 (672)
Q Consensus 349 ~~~~----~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~L~~~y~~g~g~~~~~~~A~~~~~ 416 (672)
.... .....||.+|.. .+++.+|.+.+.+..+. ++ .+.+.....+|.. .+|..++..+|.
T Consensus 92 ~~r~flr~~l~~kL~~l~~~----~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~----~~n~~k~k~~l~ 163 (394)
T 3txn_A 92 EKRTFLRQSLEARLIALYFD----TALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA----LSNLPKARAALT 163 (394)
T ss_dssp TTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH----TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH----hccHHHHHHHHH
Confidence 2221 234578999998 89999999888887651 22 2344455566766 789999999999
Q ss_pred HHHHcC-----ChhH----HHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 005877 417 LVAERG-----PWSS----LSRWALESY-LKGDVGKAFLLYSRMAE 452 (672)
Q Consensus 417 ~a~~~~-----~~~a----~~~lg~~~~-~~g~~~~A~~~~~~a~~ 452 (672)
++.... +|.. ...-|..+. ..++|.+|..+|-++.+
T Consensus 164 ~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 164 SARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 885432 3432 233466777 79999999999988853
No 239
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.02 E-value=15 Score=36.21 Aligned_cols=20 Identities=25% Similarity=0.524 Sum_probs=11.4
Q ss_pred HHHHHhccCCHHHHHHHHHH
Q 005877 166 VAYTYLRQDMHDKAVKLYAE 185 (672)
Q Consensus 166 Lg~~y~~~~~~~~A~~~y~~ 185 (672)
+..+|.+++++++|++....
T Consensus 39 l~~Ry~~~~~~~eAidlL~~ 58 (312)
T 2wpv_A 39 IANRYVRSKSYEHAIELISQ 58 (312)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHH
Confidence 45555556666666655544
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=84.52 E-value=2.7 Score=36.33 Aligned_cols=112 Identities=12% Similarity=0.032 Sum_probs=72.9
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHhCCCC
Q 005877 451 AELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNE----------HAALLIGDAYYYGRGT 520 (672)
Q Consensus 451 ~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----------~a~~~lG~~y~~g~g~ 520 (672)
..+.+++.+.++...+.+.|.. ..+ +-+++-+..|++|+..-++ ..+++.+.. . .
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p---------~~d-~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~----e 72 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVP---------LSD-ALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-K----A 72 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCS---------CCH-HHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-H----H
T ss_pred eCCCCHHHHHHHHHHHHHcCCC---------chh-hHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-H----H
Confidence 4566777777777777763321 112 3446777888887655443 234455544 2 3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcc
Q 005877 521 QRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKL 579 (672)
Q Consensus 521 ~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~ 579 (672)
.+|.++|.+.|+.+++.+..-|-.++++....- -++|..+|++.+.+|+.+.|....
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEi--Rqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFEL--SQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HcccHHHHHHHHHHHhccCCCcHH
Confidence 489999999999997753323555555554221 179999999999999999887543
No 241
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=83.45 E-value=0.77 Score=30.25 Aligned_cols=22 Identities=14% Similarity=0.357 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 005877 628 TILTLFVCLLTVLYLRERQRRN 649 (672)
Q Consensus 628 ~~~~~~~~~~~~~~~r~~~~~~ 649 (672)
.++.+++++++++|+|||+.++
T Consensus 21 vll~vi~~l~~~~~~RRR~~~~ 42 (44)
T 2jwa_A 21 ILLVVVLGVVFGILIKRRQQKI 42 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHHhheehhhhhc
Confidence 3455555666678888776653
No 242
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=82.36 E-value=35 Score=33.51 Aligned_cols=108 Identities=15% Similarity=0.109 Sum_probs=62.3
Q ss_pred HhhhccCChHHHHHHHHHHH----HcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-C
Q 005877 218 ALRKSRGEDDEAFQILEYQA----QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYAR-G 292 (672)
Q Consensus 218 ~~~~~~g~~~~Ai~~~~~aa----~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~-g 292 (672)
..|.+++++++|++++...+ +.+...+-..|+.++. +.|+++-..-+....-.|..++.. .
T Consensus 41 ~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llv--------------ev~~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 41 NRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLL--------------EVYDLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------HHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHH--------------HHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 34567788999999888754 3466666666665553 223332222334444455555433 1
Q ss_pred CCC---cCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Q 005877 293 AGV---ERNYTKALEWLTHAA--RQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFE 344 (672)
Q Consensus 293 ~g~---~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~ 344 (672)
... ..-..+|++|-.+.- ..|++.-+..+|..|.. .+++.+|..+|-
T Consensus 107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~-----e~~~~~A~~H~i 158 (312)
T 2wpv_A 107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLE-----GDFVYEAERYFM 158 (312)
T ss_dssp TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHH-----TTCHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhh-----cCCHHHHHHHHH
Confidence 000 122345555555432 34788888888888876 348888887775
No 243
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=81.01 E-value=6.1 Score=41.89 Aligned_cols=76 Identities=20% Similarity=0.270 Sum_probs=58.1
Q ss_pred HHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHH--HcCCHHHHHHHHHH
Q 005877 390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW--SSLSRWALESYLKGDVGKAFLLYSRMA--ELGYEVAQSNAAWI 465 (672)
Q Consensus 390 a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~~~~~g~~~~A~~~~~~a~--~~g~~~a~~nla~~ 465 (672)
.+..||.+... ...++.|..||.+|+...|. .++..||.+....|+.-+|+-+|.+++ ...++.|..|+..+
T Consensus 154 ~l~~LGDL~RY----~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~ 229 (497)
T 1ya0_A 154 CLVHLGDIARY----RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred HHHHcccHHHH----HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHH
Confidence 45667777666 45678888888888888764 467888888888888888888888884 34578888888888
Q ss_pred HHHh
Q 005877 466 LDKY 469 (672)
Q Consensus 466 l~~~ 469 (672)
+++.
T Consensus 230 f~~~ 233 (497)
T 1ya0_A 230 LSKA 233 (497)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8763
No 244
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=77.28 E-value=5 Score=42.56 Aligned_cols=59 Identities=19% Similarity=0.084 Sum_probs=53.0
Q ss_pred HHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 005877 126 ARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAE 188 (672)
Q Consensus 126 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~ 188 (672)
.+..||.+... ......|..||.+|.. |++..++..||.+....++.-.|+-+|-+++.
T Consensus 154 ~l~~LGDL~RY----~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 154 CLVHLGDIARY----RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHcccHHHH----HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 56789999888 6678999999999987 78999999999999999999999999999764
No 245
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=76.24 E-value=64 Score=31.94 Aligned_cols=139 Identities=10% Similarity=0.052 Sum_probs=75.5
Q ss_pred hhcHHHHHHHHHHHHHcCCH----HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHH
Q 005877 369 KRDVKLACKYFLVAANAGHQ----KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAF 444 (672)
Q Consensus 369 ~~~~~~A~~~~~~A~~~~~~----~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~ 444 (672)
....++-+.-++..++.|+. +|+..+-.++.. +-..+++++|++++...+. .+.+.|+..-|.
T Consensus 9 ~~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~R-y~~~k~y~eAidLL~~GA~------------~ll~~~Q~~sg~ 75 (336)
T 3lpz_A 9 SNKIERIIARLQRRIAEGQPEEQYEAAQETRLVAAR-YSKQGNWAAAVDILASVSQ------------TLLRSGQGGSGG 75 (336)
T ss_dssp -CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH------------HHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHH-HHhhcCHHHHHHHHHHHHH------------HHHHCCCcchHH
Confidence 45566777777777777754 444333333211 1126777777776655432 122223332222
Q ss_pred -------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHH--HhCCCHHHHHHHHHHHH
Q 005877 445 -------LLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQA--SEQGNEHAALLIGDAYY 515 (672)
Q Consensus 445 -------~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a--~~~~~~~a~~~lG~~y~ 515 (672)
+.|.++--.-+......+..++..... .-+....=.++|++|..+. ...|+++-+..+|.+|.
T Consensus 76 DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~--------~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~ 147 (336)
T 3lpz_A 76 DLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQP--------GEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYV 147 (336)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCT--------TCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC--------CCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Confidence 223332111234445555555543211 1111223356777777763 35688999999999999
Q ss_pred hCCCCCCCHHHHHHHHH
Q 005877 516 YGRGTQRDYERAAEAYM 532 (672)
Q Consensus 516 ~g~g~~~d~~~A~~~~~ 532 (672)
..+++.+|..+|-
T Consensus 148 ----~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 148 ----EEGEFEAAEKHLV 160 (336)
T ss_dssp ----HTTCHHHHHHHHT
T ss_pred ----ccCCHHHHHHHHH
Confidence 7789999988885
No 246
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=69.77 E-value=1.8 Score=28.54 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHhhhhh
Q 005877 633 FVCLLTVLYLRERQRRN 649 (672)
Q Consensus 633 ~~~~~~~~~~r~~~~~~ 649 (672)
+++++.++|+|+|++++
T Consensus 25 ii~~~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 25 IVGLTFAVYVRRKSIKK 41 (44)
T ss_dssp HHHHHHHHHHHTTCSSC
T ss_pred HHHHHHHHHhhhhhhhh
Confidence 33445556777655443
No 247
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=67.91 E-value=59 Score=28.61 Aligned_cols=79 Identities=14% Similarity=-0.021 Sum_probs=57.6
Q ss_pred hhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC-------------------Chh-HHH
Q 005877 369 KRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG-------------------PWS-SLS 428 (672)
Q Consensus 369 ~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~-------------------~~~-a~~ 428 (672)
.|.+..++-.+. ..+...+.+.-..+|.. .+|+.+|+..+++.++.. +.+ .+.
T Consensus 46 ngEY~R~Lf~L~---~lNT~Ts~YYk~LCy~k----lKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~ 118 (242)
T 3kae_A 46 NGEYTRALFHLH---KLNTCTSKYYESLCYKK----KKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFES 118 (242)
T ss_dssp TTCHHHHHHHHH---TCCBHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHH
T ss_pred cchHhHHHHHHH---hcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHH
Confidence 456666654443 35677788888888887 888888888888887322 111 355
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877 429 RWALESYLKGDVGKAFLLYSRMAELG 454 (672)
Q Consensus 429 ~lg~~~~~~g~~~~A~~~~~~a~~~g 454 (672)
.+|..+-..|+.++|+.+|..+....
T Consensus 119 l~a~lltq~g~r~EaI~y~~~Sf~~~ 144 (242)
T 3kae_A 119 LLGDLCTLSGYREEGIGHYVRSFGKS 144 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCHHHhhhHhhhhcCCc
Confidence 67888999999999999999986654
No 248
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=65.21 E-value=43 Score=38.63 Aligned_cols=92 Identities=10% Similarity=0.017 Sum_probs=51.0
Q ss_pred HHHHHHHHHcCCCchhcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC---Chh
Q 005877 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANA------GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG---PWS 425 (672)
Q Consensus 355 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~------~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 425 (672)
+..|-..|.+ .|+.++|...|....+. -+...++-|-..|-. .|+.++|.++|++..+.| +..
T Consensus 130 ynaLIdglcK----~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck----~G~~~eA~~Lf~eM~~~G~~PDvv 201 (1134)
T 3spa_A 130 LLAFFKCCLL----TDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR----QGAFKELVYVLFMVKDAGLTPDLL 201 (1134)
T ss_dssp HHHHHHHHHH----HTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHh----CCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCcHH
Confidence 3344444555 56666676666543221 144444444444433 666777777777766666 223
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHHcC
Q 005877 426 SLSRWALESYLKGD-VGKAFLLYSRMAELG 454 (672)
Q Consensus 426 a~~~lg~~~~~~g~-~~~A~~~~~~a~~~g 454 (672)
+|..+-..+.+.|+ .++|...+++..+.|
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 45555555555565 456667777666666
No 249
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=64.97 E-value=2e+02 Score=32.95 Aligned_cols=233 Identities=16% Similarity=0.101 Sum_probs=133.3
Q ss_pred HHHHHHHHHHc-----CCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh---CCC-
Q 005877 281 SMEFLGEIYAR-----GAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAAD---NEE- 351 (672)
Q Consensus 281 a~~~Lg~~y~~-----g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~---~~~- 351 (672)
+..+++..+.+ |.+...-...-..|+-++-.-+...+...||.++. ++.++++..+.+-+. .++
T Consensus 337 s~~~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~-------g~~~~gl~~L~~yL~~~~s~~~ 409 (963)
T 4ady_A 337 SLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHK-------GNLLEGKKVMAPYLPGSRASSR 409 (963)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTS-------SCTTTHHHHHTTTSTTSCCSCH
T ss_pred hHHHHHHHHHHHHHhCCCCcchhhhcchhhhhccchHHHHHHHHHhhhhcc-------CchHHHHHHHHHhccccCCCcH
Confidence 44556665544 33333323333567766543344677889999985 466778888777665 222
Q ss_pred ---HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCC--------H----HHHHHHHHHHHcCCCccCCHHHHHHHHH
Q 005877 352 ---AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGH--------Q----KAFYQLAKMFHTGVGLKKNLHMATALYK 416 (672)
Q Consensus 352 ---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~--------~----~a~~~L~~~y~~g~g~~~~~~~A~~~~~ 416 (672)
..|.+-||.++.. .+ .+++.++...+...+ . -+-.-||.+|.- .+ .+++++.+.
T Consensus 410 ~ik~GAllaLGli~ag----~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~G----S~-~eev~e~L~ 478 (963)
T 4ady_A 410 FIKGGSLYGLGLIYAG----FG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMG----SA-NIEVYEALK 478 (963)
T ss_dssp HHHHHHHHHHHHHTTT----TT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTT----CC-CHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC----Cc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcC----CC-CHHHHHHHH
Confidence 4567778877754 33 357777776665333 1 244455655542 22 356778888
Q ss_pred HHHHcCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHH
Q 005877 417 LVAERGPW----SSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAH 492 (672)
Q Consensus 417 ~a~~~~~~----~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~ 492 (672)
..+...+. .+-+.+|.++...|+-+-....+..+.+..+......++..+.... .++.+.+-
T Consensus 479 ~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~--------------~g~~e~~~ 544 (963)
T 4ady_A 479 EVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALIN--------------YGRQELAD 544 (963)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT--------------TTCGGGGH
T ss_pred HHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhh--------------CCChHHHH
Confidence 88776553 3456778888888887766666666666655554444444433210 12223333
Q ss_pred HHHHHHHhCCCHHHH----HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC----HHHHHHHHHH
Q 005877 493 SLWWQASEQGNEHAA----LLIGDAYYYGRGTQRDYERAAEAYMHARSQSN----AQAMFNLGYM 549 (672)
Q Consensus 493 ~~~~~a~~~~~~~a~----~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~~----~~a~~~Lg~~ 549 (672)
.+.+......++... +.+|..|. ..||...-...+..+.+..+ ..|...||.+
T Consensus 545 ~li~~L~~~~dp~vRygaa~alglAya----GTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI 605 (963)
T 4ady_A 545 DLITKMLASDESLLRYGGAFTIALAYA----GTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFV 605 (963)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHTT----TSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhh
Confidence 444444444555443 35677776 66776554457777776433 2355666655
No 250
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=63.98 E-value=4.1 Score=26.90 Aligned_cols=16 Identities=31% Similarity=0.380 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHhhhh
Q 005877 633 FVCLLTVLYLRERQRR 648 (672)
Q Consensus 633 ~~~~~~~~~~r~~~~~ 648 (672)
++++++++|+|+|+++
T Consensus 26 ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 26 VVALGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHhhhhHhh
Confidence 3344455666665544
No 251
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.74 E-value=15 Score=38.03 Aligned_cols=80 Identities=14% Similarity=0.067 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHH--HHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh----CCC-HHHHHHHHHHHhccCCHHH
Q 005877 106 RVMEEATSEVES--AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE----GGN-IQSKMAVAYTYLRQDMHDK 178 (672)
Q Consensus 106 ~~~~~A~~~~~~--a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~----~~~-~~a~~~Lg~~y~~~~~~~~ 178 (672)
..+++.+..+++ ..+..-..+...||..|.. .||+++|.++|.++.+ .++ .+.++.+-.++...+|+..
T Consensus 111 ~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~----~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~ 186 (429)
T 4b4t_R 111 KELNEKIQKLEEDDEGELEQAQAWINLGEYYAQ----IGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLY 186 (429)
T ss_dssp HHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHH----HCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHH
Confidence 344555555544 1222345688999999999 9999999999999865 233 5778888888889999999
Q ss_pred HHHHHHHHHHH
Q 005877 179 AVKLYAELAEI 189 (672)
Q Consensus 179 A~~~y~~a~~~ 189 (672)
+..+++++...
T Consensus 187 ~~~~~~ka~~~ 197 (429)
T 4b4t_R 187 VKEKLEAVNSM 197 (429)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998654
No 252
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=63.53 E-value=78 Score=27.85 Aligned_cols=90 Identities=9% Similarity=0.008 Sum_probs=65.2
Q ss_pred cCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--------
Q 005877 85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE-------- 156 (672)
Q Consensus 85 ~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~-------- 156 (672)
++--...++.... .|.+..++-.+. ..+-..+.+.-..+|.. .+|+.+|+...++.+.
T Consensus 33 ~eY~lL~~I~Lyy-------ngEY~R~Lf~L~---~lNT~Ts~YYk~LCy~k----lKdYkkA~~~le~il~~kvd~d~~ 98 (242)
T 3kae_A 33 PEYRMLMSIVLYL-------NGEYTRALFHLH---KLNTCTSKYYESLCYKK----KKDYKKAIKSLESILEGKVERDPD 98 (242)
T ss_dssp -CTHHHHHHHHHH-------TTCHHHHHHHHH---TCCBHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCSBCCCC
T ss_pred hHHHhhhhhhhhh-------cchHhHHHHHHH---hcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcccccCcc
Confidence 3334444555443 466777766653 34557788888999998 9999999999999873
Q ss_pred -----------CCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHH
Q 005877 157 -----------GGNIQS-KMAVAYTYLRQDMHDKAVKLYAELAE 188 (672)
Q Consensus 157 -----------~~~~~a-~~~Lg~~y~~~~~~~~A~~~y~~a~~ 188 (672)
+++.+. ...+|.++...|+.++||.+|...-.
T Consensus 99 ~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 99 VDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp CCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 234333 45689999999999999999987544
No 253
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=60.67 E-value=15 Score=28.18 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 408 LHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 408 ~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
.++|+.+.++|++ ....|++++|+.+|.++++.
T Consensus 16 ~~~Ai~lv~~Ave-------------~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 16 EEMARKYAINAVK-------------ADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHH-------------HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------------HHHhccHHHHHHHHHHHHHH
Confidence 4566666666654 45678888888888888763
No 254
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=60.39 E-value=59 Score=27.55 Aligned_cols=59 Identities=15% Similarity=0.006 Sum_probs=42.8
Q ss_pred cCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005877 405 KKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAA 463 (672)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla 463 (672)
++..++=-..+...+...+ ++.+..++.+|-+.|+..+|-+.+.+|.+.|-.+|-.++-
T Consensus 104 ~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~kEAC~~in 164 (172)
T 1wy6_A 104 QGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEKEACNAVN 164 (172)
T ss_dssp TTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhHHHHHHHH
Confidence 4555555555555444443 6778888999999999999999999999999888876653
No 255
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.50 E-value=21 Score=37.04 Aligned_cols=95 Identities=16% Similarity=0.157 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc----C-CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHc----
Q 005877 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----G-HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER---- 421 (672)
Q Consensus 351 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~-~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~---- 421 (672)
...+...+|..|.+ .||+++|.+.|.+.... + ..+....+-.++.. .+|+..+..+++++...
T Consensus 130 ~~~~~~~la~~~~~----~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~----~~d~~~~~~~~~ka~~~~~~~ 201 (429)
T 4b4t_R 130 QAQAWINLGEYYAQ----IGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFF----YNDQLYVKEKLEAVNSMIEKG 201 (429)
T ss_dssp CSSCCHHHHHHHHH----HCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhhhcC
Confidence 34566677777777 77777777777776542 2 23445555555554 67777777777777432
Q ss_pred CChhHH----HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 422 GPWSSL----SRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 422 ~~~~a~----~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
++|... ...|..+...++|.+|..+|..+...
T Consensus 202 ~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 202 GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 234332 23456666778888888888776543
No 256
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=58.62 E-value=57 Score=37.67 Aligned_cols=92 Identities=12% Similarity=0.081 Sum_probs=67.8
Q ss_pred HHHHHHHHHcCCCccCCHHHHHHHHHHHHHc---C---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CHHHHHH
Q 005877 391 FYQLAKMFHTGVGLKKNLHMATALYKLVAER---G---PWSSLSRWALESYLKGDVGKAFLLYSRMAELG---YEVAQSN 461 (672)
Q Consensus 391 ~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~---~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g---~~~a~~n 461 (672)
+.-|-..|-. .|+.++|...+....+. + +..++..+-..+.+.|+.++|...|++..+.| +...++.
T Consensus 130 ynaLIdglcK----~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 130 LLAFFKCCLL----TDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHH----HTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHh----CCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 3344444444 79999999999775432 2 45678888889999999999999999999998 6666666
Q ss_pred HHHHHHHhCCCCcccCCCCCCCchHh-HHHHHHHHHHHHhCC
Q 005877 462 AAWILDKYGEGSMCMGESGFCTDAER-HQCAHSLWWQASEQG 502 (672)
Q Consensus 462 la~~l~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~ 502 (672)
+-..+.+ .++ .++|.++++...+.|
T Consensus 206 LI~glcK----------------~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 206 ALQCMGR----------------QDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHH----------------HTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHh----------------CCCcHHHHHHHHHHHHHcC
Confidence 6666655 333 467888888766655
No 257
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=58.28 E-value=17 Score=27.83 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 408 LHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 408 ~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
.++|+.+.++|++ ....|++++|+.+|..+++.
T Consensus 8 ~~~Ai~lv~~Ave-------------~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 8 EDMARKYAILAVK-------------ADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHH-------------HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------------HHHhccHHHHHHHHHHHHHH
Confidence 3466666666654 45678899999999888763
No 258
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=56.89 E-value=74 Score=35.45 Aligned_cols=46 Identities=17% Similarity=0.086 Sum_probs=34.4
Q ss_pred cCCHHHHHHHHHHHHHcCCh--hHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005877 405 KKNLHMATALYKLVAERGPW--SSLSRWALESYLKGDVGKAFLLYSRM 450 (672)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~~~~~g~~~~A~~~~~~a 450 (672)
+++++-|+.+-++|+...|. .+++.|+.+|...||++.|+-.+.-.
T Consensus 350 K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 350 RGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 67788888888888777753 46777888888888888887766544
No 259
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=50.72 E-value=11 Score=29.54 Aligned_cols=36 Identities=14% Similarity=0.138 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Q 005877 520 TQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALE 572 (672)
Q Consensus 520 ~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 572 (672)
...-.++|+...++|++.++ .+++++|+.+|+.|++
T Consensus 8 ~~~~l~~Ai~lv~~Ave~D~-----------------~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 8 QDSDSTAAVAVLKRAVELDA-----------------ESRYQQALVCYQEGID 43 (93)
T ss_dssp CCCHHHHHHHHHHHHHHHHH-----------------TTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHH-----------------hCCHHHHHHHHHHHHH
Confidence 44456677777777765421 4566666666666554
No 260
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=50.55 E-value=27 Score=27.31 Aligned_cols=37 Identities=16% Similarity=0.168 Sum_probs=25.8
Q ss_pred ccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 404 LKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 404 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
...-.++|+.+.++|++ ....|++++|+.+|..+++.
T Consensus 8 ~~~~l~~Ai~lv~~Ave-------------~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 8 QDSDSTAAVAVLKRAVE-------------LDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp CCCHHHHHHHHHHHHHH-------------HHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH-------------HHHhCCHHHHHHHHHHHHHH
Confidence 44456677777777765 34568888888888887663
No 261
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=48.70 E-value=2.1e+02 Score=28.22 Aligned_cols=63 Identities=19% Similarity=0.256 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHHhcCCCcc---cCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHH
Q 005877 241 NAGAMYKIGLFYYFGLRGLR---RDRTKALMWFSKAA--DKGEPQSMEFLGEIYARGAGVERNYTKALEWLT 307 (672)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~---~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 307 (672)
+.+..-.|..++-.-....+ .=.++|+.|=.+.= ..|+|..+..+|.+|.. .+++.+|..+|-
T Consensus 93 ~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~----e~~~~~Ae~H~i 160 (336)
T 3lpz_A 93 DGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVE----EGEFEAAEKHLV 160 (336)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHH----TTCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHH
Confidence 44555556666543310000 01234555544421 24788888888888888 778888877774
No 262
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=48.46 E-value=1e+02 Score=34.34 Aligned_cols=46 Identities=11% Similarity=-0.016 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHc
Q 005877 503 NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ-SNAQAMFNLGYMHEH 552 (672)
Q Consensus 503 ~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~a~~~Lg~~y~~ 552 (672)
.+.=|--||.+-. ..+++++|++.|+.++.. -++.+...|=.+|.+
T Consensus 612 s~lEWEiLGlla~----RL~h~~EA~~a~~~~l~~RFs~ka~~kLLeiY~~ 658 (754)
T 4gns_B 612 SGLEWELLGLIML----RTWHWEDAVACLRTSIVARFDPVSCQQLLKIYLQ 658 (754)
T ss_dssp CHHHHHHHHHHHH----HTTCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 4666889999999 789999999999999985 689999999999976
No 263
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=44.71 E-value=33 Score=26.13 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=11.9
Q ss_pred ccCChHHHHHHHHHHH
Q 005877 222 SRGEDDEAFQILEYQA 237 (672)
Q Consensus 222 ~~g~~~~Ai~~~~~aa 237 (672)
..|++++|+.+|+.++
T Consensus 31 ~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 31 KEGNAEEAITNYKKAI 46 (83)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHH
Confidence 5678888888777665
No 264
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=42.81 E-value=5.1 Score=24.88 Aligned_cols=17 Identities=18% Similarity=0.467 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHhh
Q 005877 630 LTLFVCLLTVLYLRERQ 646 (672)
Q Consensus 630 ~~~~~~~~~~~~~r~~~ 646 (672)
+.+++++.+.+|+|||+
T Consensus 19 l~vii~l~~~~~iRRr~ 35 (35)
T 1iij_A 19 LFLILVVVVGILIKRRR 35 (35)
T ss_dssp HHHHHTTTTTHHHHHCC
T ss_pred HHHHHHHHhheEEeecC
Confidence 33334444558888764
No 265
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=42.41 E-value=37 Score=25.81 Aligned_cols=16 Identities=13% Similarity=0.243 Sum_probs=11.8
Q ss_pred ccCChHHHHHHHHHHH
Q 005877 222 SRGEDDEAFQILEYQA 237 (672)
Q Consensus 222 ~~g~~~~Ai~~~~~aa 237 (672)
..|++++|+.+|..++
T Consensus 23 ~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAI 38 (83)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHH
Confidence 5678888887777655
No 266
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=42.10 E-value=1.7e+02 Score=29.49 Aligned_cols=59 Identities=15% Similarity=0.053 Sum_probs=48.1
Q ss_pred HHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005877 390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (672)
Q Consensus 390 a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 452 (672)
+...++..+.. .+++.+|+..++.++...| ...+..+-.+++..|+..+|+..|++..+
T Consensus 173 a~~~~~~~~l~----~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIA----CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455666665 7899999999999998885 45788888899999999999999998743
No 267
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.17 E-value=1.1e+02 Score=31.66 Aligned_cols=93 Identities=11% Similarity=-0.031 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cC------CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHH----
Q 005877 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AG------HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAE---- 420 (672)
Q Consensus 353 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~------~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~---- 420 (672)
.....|+.+|.. .|++.+|...+..... .+ -.+.+.....+|.. .+|+.+|..+++++..
T Consensus 138 rl~~~La~i~e~----~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~----~~d~~~a~~~~~ki~~~~~~ 209 (445)
T 4b4t_P 138 RVTKDLVEIKKE----EGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL----KGDYSQATVLSRKILKKTFK 209 (445)
T ss_dssp HHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhhcc
Confidence 344567777777 7777777777766532 11 13455556666666 7889999888888742
Q ss_pred cC-Chh----HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 421 RG-PWS----SLSRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 421 ~~-~~~----a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
.. ++. .+...|..+...++|.+|-.+|..+.+.
T Consensus 210 ~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 210 NPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 11 232 2345577777889999999999888653
No 268
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=40.71 E-value=1.2e+02 Score=30.73 Aligned_cols=62 Identities=6% Similarity=-0.104 Sum_probs=50.1
Q ss_pred HHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhh
Q 005877 129 VLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSF 194 (672)
Q Consensus 129 ~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~ 194 (672)
.++..+.. .+++.+|+..+..++. +-+..++..|-.++...|+..+|+..|+++.+.-....
T Consensus 176 ~~~~~~l~----~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eL 239 (388)
T 2ff4_A 176 AKAEAEIA----CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDL 239 (388)
T ss_dssp HHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 34445555 7899999999888765 67888999999999999999999999999877654443
No 269
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=37.50 E-value=54 Score=24.93 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005877 407 NLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (672)
Q Consensus 407 ~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 452 (672)
..++|+.+..+|++ .-..|++++|+.+|..+++
T Consensus 9 ~l~~A~~l~~~Av~-------------~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 9 FLTKGIELVQKAID-------------LDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHHHH-------------HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------------HHHcCCHHHHHHHHHHHHH
Confidence 35566666666653 3456788888888887766
No 270
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=36.32 E-value=56 Score=25.04 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 407 NLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 407 ~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
...+|+.+.++|++ .-..|++++|+.+|..+++.
T Consensus 12 ~~~~A~~lv~~Ave-------------~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 12 QSTAAATVLKRAVE-------------LDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHH-------------HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------------HHHcCCHHHHHHHHHHHHHH
Confidence 34556666666654 35678888888888888763
No 271
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.92 E-value=1.3e+02 Score=31.12 Aligned_cols=93 Identities=17% Similarity=0.052 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--C------CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh--
Q 005877 279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--Q------LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAAD-- 348 (672)
Q Consensus 279 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~------~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~-- 348 (672)
+.....|+.+|.. .|++.+|...+...... + -.+.+.....+|.. .+|+.+|..+++++..
T Consensus 137 arl~~~La~i~e~----~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~-----~~d~~~a~~~~~ki~~~~ 207 (445)
T 4b4t_P 137 ARVTKDLVEIKKE----EGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL-----KGDYSQATVLSRKILKKT 207 (445)
T ss_dssp HHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHhh
Confidence 3455778999998 89999999988876421 1 12334444445543 4578888777777632
Q ss_pred --C-CCHH----HHHHHHHHHHcCCCchhcHHHHHHHHHHHHH
Q 005877 349 --N-EEAG----GHYNLGVMYYKGIGVKRDVKLACKYFLVAAN 384 (672)
Q Consensus 349 --~-~~~~----a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 384 (672)
. ..+. -+...|.++.. .++|.+|..+|..+.+
T Consensus 208 ~~~~~~~~lk~~~~~~~~~~~~~----e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 208 FKNPKYESLKLEYYNLLVKISLH----KREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHh
Confidence 1 2222 22345666666 6777777777776654
No 272
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=34.55 E-value=52 Score=26.92 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005877 408 LHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (672)
Q Consensus 408 ~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 452 (672)
.++|+.+..+|++ .-..|++++|+.+|..+++
T Consensus 15 l~kAi~lv~~Ave-------------~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 15 LQKAIDLASKAAQ-------------EDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHH-------------HHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------------HHHccCHHHHHHHHHHHHH
Confidence 5566666666653 3345777777777777765
No 273
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=32.02 E-value=1.8e+02 Score=28.83 Aligned_cols=72 Identities=17% Similarity=0.162 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 005877 454 GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMH 533 (672)
Q Consensus 454 g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~ 533 (672)
-++.|+-|||.+-+.... .+.+....-+.+|+..-++--...+...+..+|-+|+ ..+++.+|++++-.
T Consensus 253 rYPmALgnLgDLEe~~pt-------~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~y----R~~~~reAl~~WA~ 321 (472)
T 3re2_A 253 TYPMAIANLGDLEEISPT-------PGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYY----RKKKYYEAIASWVD 321 (472)
T ss_dssp TCHHHHHHHHHHHHHSCC-------TTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHH----HTTCHHHHHHHHHH
T ss_pred hCchhhcchhhHHhcCCC-------CCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhh----hcchHHHHHHHHHH
Confidence 388889999988665211 2233333344555554444444556778888999888 89999999999988
Q ss_pred HHh
Q 005877 534 ARS 536 (672)
Q Consensus 534 A~~ 536 (672)
|..
T Consensus 322 Aa~ 324 (472)
T 3re2_A 322 AGY 324 (472)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 274
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=31.61 E-value=2.3e+02 Score=33.38 Aligned_cols=64 Identities=11% Similarity=0.000 Sum_probs=44.6
Q ss_pred CCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC-------------------------CCHHHHHHHHHHHhccCC
Q 005877 121 EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG-------------------------GNIQSKMAVAYTYLRQDM 175 (672)
Q Consensus 121 ~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~-------------------------~~~~a~~~Lg~~y~~~~~ 175 (672)
+.++...|.+|.+|.. .+++++|..+|++|+.. +.+..++.+..++.+.+-
T Consensus 839 ~~~~~~~yl~g~~~L~----~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~ 914 (1139)
T 4fhn_B 839 NSDPIAVYLKALIYLK----SKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESA 914 (1139)
T ss_dssp CCCHHHHHHHHHHHHH----TTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSC
T ss_pred cCCcHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCC
Confidence 4677788999999999 99999999999998642 112334455555555666
Q ss_pred HHHHHHHHHHHHH
Q 005877 176 HDKAVKLYAELAE 188 (672)
Q Consensus 176 ~~~A~~~y~~a~~ 188 (672)
++-++++-+.+++
T Consensus 915 ~~~vi~fa~lAi~ 927 (1139)
T 4fhn_B 915 YIDALEFSLLADA 927 (1139)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665554
No 275
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=26.76 E-value=48 Score=24.92 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877 427 LSRWALESYLKGDVGKAFLLYSRMAEL 453 (672)
Q Consensus 427 ~~~lg~~~~~~g~~~~A~~~~~~a~~~ 453 (672)
...+|..+-..|+|+.|+.+|+.++++
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 456777788899999999999988764
No 276
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=26.24 E-value=97 Score=23.46 Aligned_cols=16 Identities=13% Similarity=0.115 Sum_probs=11.2
Q ss_pred ccCChHHHHHHHHHHH
Q 005877 222 SRGEDDEAFQILEYQA 237 (672)
Q Consensus 222 ~~g~~~~Ai~~~~~aa 237 (672)
..|++++|+.+|..++
T Consensus 25 ~~g~y~eAl~~Y~~ai 40 (85)
T 2v6x_A 25 TATQYEEAYTAYYNGL 40 (85)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 4567778877777655
No 277
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=26.06 E-value=2.5e+02 Score=28.43 Aligned_cols=72 Identities=11% Similarity=-0.008 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 005877 454 GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMH 533 (672)
Q Consensus 454 g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~ 533 (672)
-++.|+-|||.+-+.... .+.+....-+.+|+..-++--...+...+..+|-+|+ ..+++.+|++.+-.
T Consensus 275 rYPmALgnLgDLEe~~pt-------~gr~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~y----R~~~~reAl~~WA~ 343 (550)
T 3u84_A 275 RYPMALGNLADLEELEPT-------PGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHC----RNRNVREALQAWAD 343 (550)
T ss_dssp TCHHHHHHHHHHHHHSCC-------TTCCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHH----HTTCHHHHHHHHHH
T ss_pred hCchhhcchhhHhhcCCC-------CCCCCHHHHHHHHHHHHHHHhccCCccceeecchhhh----hcchHHHHHHHHHH
Confidence 388888899888665211 2222223344555554444444556778888898888 88999999999988
Q ss_pred HHh
Q 005877 534 ARS 536 (672)
Q Consensus 534 A~~ 536 (672)
|.+
T Consensus 344 Aa~ 346 (550)
T 3u84_A 344 TAT 346 (550)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 278
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=25.94 E-value=2.8e+02 Score=32.66 Aligned_cols=87 Identities=13% Similarity=0.093 Sum_probs=52.6
Q ss_pred HHHHHHHHcCCCchhcHHHHHHHHHHHHH-------------------------cCCHHHHHHHHHHHHcCCCccCCHHH
Q 005877 356 YNLGVMYYKGIGVKRDVKLACKYFLVAAN-------------------------AGHQKAFYQLAKMFHTGVGLKKNLHM 410 (672)
Q Consensus 356 ~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~-------------------------~~~~~a~~~L~~~y~~g~g~~~~~~~ 410 (672)
|.+|.+|.. .+++++|..+|++|+. .+.+.-++.+..+++. .+-++.
T Consensus 846 yl~g~~~L~----~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~----~~~~~~ 917 (1139)
T 4fhn_B 846 YLKALIYLK----SKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFE----ESAYID 917 (1139)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHH----TSCCHH
T ss_pred HHHHHHHHh----cCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHH----cCCHHH
Confidence 556666666 6666666666665531 1123456667777776 677788
Q ss_pred HHHHHHHHHHcCC---hh----HHHHHHHHHHhcCCHHHHHHHHHHH
Q 005877 411 ATALYKLVAERGP---WS----SLSRWALESYLKGDVGKAFLLYSRM 450 (672)
Q Consensus 411 A~~~~~~a~~~~~---~~----a~~~lg~~~~~~g~~~~A~~~~~~a 450 (672)
+++.-+.|++..+ +. -+.++=..+...|+|++|...+...
T Consensus 918 vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 918 ALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 8888888776542 21 1333444556678888877666544
No 279
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=25.25 E-value=55 Score=24.60 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=23.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 005877 163 KMAVAYTYLRQDMHDKAVKLYAELAEIA 190 (672)
Q Consensus 163 ~~~Lg~~y~~~~~~~~A~~~y~~a~~~~ 190 (672)
...+|.-|...|||+.|+.+|+-+++..
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI 42 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQM 42 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 4567888888999999999999988754
No 280
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=24.23 E-value=6e+02 Score=26.35 Aligned_cols=116 Identities=18% Similarity=0.085 Sum_probs=0.0
Q ss_pred hhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 005877 369 KRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYS 448 (672)
Q Consensus 369 ~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~ 448 (672)
......-.......++..-..|..+...+-.. +.++|+++-++|++ .|++|+.+++
T Consensus 408 ~~~ik~i~~s~i~sL~eKi~~AE~~~~k~e~~------~n~~a~~yA~kAi~------------------~Y~~Ai~~L~ 463 (526)
T 2wb7_A 408 REKINATTKAMINSLQEKIDEAEQLLAKAKGM------NNENAIEYAQGAID------------------EYKAAINDLQ 463 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHH------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc------CCHHHHHHHHHHHH------------------HHHHHHHHHH
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHH
Q 005877 449 RMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAA 528 (672)
Q Consensus 449 ~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~ 528 (672)
++-..+++.---+...+ .++++-|=.+|.+|++. +|+ |+.++|.
T Consensus 464 k~~~tdd~~~v~~~~~~-------------------ak~yE~aGDyy~~AA~k-----------~~y------G~~eqAe 507 (526)
T 2wb7_A 464 KAAQQDDYQMFLNYLNA-------------------AKKHEMAGDYYVNAARK-----------ALN------GDLEQAK 507 (526)
T ss_dssp HHTTCCSHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHH-----------HHT------TCHHHHH
T ss_pred hhhccCCHHHHHHHHHH-------------------hhhhhhccHHHHHHHHH-----------Hhc------CccHHHH
Q ss_pred HHHHHHHhcCCHHHHH
Q 005877 529 EAYMHARSQSNAQAMF 544 (672)
Q Consensus 529 ~~~~~A~~~~~~~a~~ 544 (672)
..-.+|-+.......|
T Consensus 508 ~l~~~A~~~~~~~~eY 523 (526)
T 2wb7_A 508 IDAEKAKEYSNLAKEY 523 (526)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhhc
No 281
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=23.46 E-value=19 Score=27.78 Aligned_cols=14 Identities=14% Similarity=0.275 Sum_probs=7.7
Q ss_pred CCHHHHHHHHHHHH
Q 005877 558 LDLHLAKRYYDQAL 571 (672)
Q Consensus 558 ~d~~~A~~~~~~A~ 571 (672)
|+.++|++||++.+
T Consensus 33 G~k~~A~~~YkkGi 46 (89)
T 3eab_A 33 GQKEQAVEWYKKGI 46 (89)
T ss_dssp SSGGGSHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555555543
No 282
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=23.30 E-value=95 Score=25.34 Aligned_cols=14 Identities=29% Similarity=0.299 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHH
Q 005877 176 HDKAVKLYAELAEI 189 (672)
Q Consensus 176 ~~~A~~~y~~a~~~ 189 (672)
.++|+.+..++++.
T Consensus 15 l~kAi~lv~~Ave~ 28 (117)
T 2cpt_A 15 LQKAIDLASKAAQE 28 (117)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46777777777654
No 283
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=22.36 E-value=1.1e+02 Score=23.25 Aligned_cols=16 Identities=13% Similarity=0.015 Sum_probs=11.3
Q ss_pred ccCChHHHHHHHHHHH
Q 005877 222 SRGEDDEAFQILEYQA 237 (672)
Q Consensus 222 ~~g~~~~Ai~~~~~aa 237 (672)
..|++++|+.+|..++
T Consensus 28 ~~g~y~eAl~lY~~Ai 43 (86)
T 4a5x_A 28 SESRYPQALVCYQEGI 43 (86)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5567778877777655
No 284
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=21.84 E-value=3.9e+02 Score=26.56 Aligned_cols=66 Identities=17% Similarity=0.086 Sum_probs=51.5
Q ss_pred CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh-------CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 005877 122 GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE-------GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEI 189 (672)
Q Consensus 122 ~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~-------~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~ 189 (672)
..|-++.+||.+=..- .......++.+|.+|+. ..++-.++.+|-.+.+.+++.+|+..+-++.+.
T Consensus 253 rYPmALgnLgDLEe~~--pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 253 TYPMAIANLGDLEEIS--PTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp TCHHHHHHHHHHHHHS--CCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCchhhcchhhHHhcC--CCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 4588999999986641 12334448888998875 256788888999999999999999999998774
No 285
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=20.25 E-value=4e+02 Score=22.61 Aligned_cols=41 Identities=15% Similarity=0.141 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005877 278 EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIG 322 (672)
Q Consensus 278 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg 322 (672)
+|...+.+|..|.. .++..+|-+.+++|.+.|..+|..++-
T Consensus 124 ~~~~l~kia~Ay~K----lg~~r~a~eLl~~AC~kG~kEAC~~in 164 (172)
T 1wy6_A 124 SASILVAIANALRR----VGDERDATTLLIEACKKGEKEACNAVN 164 (172)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHH----hcchhhHHHHHHHHHHhhhHHHHHHHH
Confidence 47777777777777 777777777777777777777766553
Done!