Query 005878
Match_columns 672
No_of_seqs 88 out of 90
Neff 3.6
Searched_HMMs 46136
Date Thu Mar 28 15:04:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005878.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005878hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09746 Membralin: Tumour-ass 100.0 7.9E-91 1.7E-95 730.0 21.7 354 4-463 14-375 (375)
2 KOG2092 Uncharacterized conser 100.0 5.2E-59 1.1E-63 476.7 0.1 368 261-653 1-374 (381)
3 KOG2092 Uncharacterized conser 100.0 5.1E-43 1.1E-47 359.4 5.5 313 5-433 55-381 (381)
4 KOG4438 Centromere-associated 35.6 36 0.00078 38.8 3.5 42 6-47 385-431 (446)
5 COG4168 SapB ABC-type antimicr 31.5 2.7E+02 0.0058 30.5 8.9 113 402-530 76-213 (321)
6 KOG4220 Muscarinic acetylcholi 23.3 1.3E+03 0.027 27.3 13.1 124 477-606 184-313 (503)
7 PF11833 DUF3353: Protein of u 22.6 2.7E+02 0.0059 28.5 6.9 26 292-319 19-44 (194)
8 PF12679 ABC2_membrane_2: ABC- 21.4 8.1E+02 0.018 24.3 11.0 28 422-449 172-199 (277)
9 PF12238 MSA-2c: Merozoite sur 20.2 2.3E+02 0.0049 29.6 5.8 26 477-502 93-119 (205)
10 PF04290 DctQ: Tripartite ATP- 18.9 1.5E+02 0.0033 26.7 3.8 29 15-43 54-82 (133)
No 1
>PF09746 Membralin: Tumour-associated protein; InterPro: IPR019144 Membralin is evolutionarily highly conserved, though it appears to represent a unique protein family. The protein appears to contain several transmembrane regions. In humans it is expressed in certain cancers, particularly ovarian cancers []. Membralin-like gene homologues have been identified in plants including grape, cotton and tomato [].
Probab=100.00 E-value=7.9e-91 Score=729.98 Aligned_cols=354 Identities=27% Similarity=0.474 Sum_probs=259.8
Q ss_pred cchHHHHHHHHhhhcChhhhhHHHHHHHHHHHHHHHHHHhhhhhcc-cCCCccccccCCccCccceEEEEEeccCccccC
Q 005878 4 EHTFIRVQERFSRVLTPRVRAYLEYIYLFIAITLFCVLVVMHANYV-QQPGCSSEFAGIRMTEAQLIQIKISSAGLWSQN 82 (672)
Q Consensus 4 ~~~f~rv~~~~a~~~~p~vR~~lEyi~L~~Ai~~f~vL~~mH~nf~-~~pgCl~~~~~~~~p~~~ilqVkI~s~g~ws~~ 82 (672)
|-.|.||+.++||.+||++||+|||++|++||++|++|+|||++|+ +|.+|++|+++. |||+||+||||.+|. |..+
T Consensus 14 ha~f~r~a~~Yar~~p~~~Rr~iEf~~L~~Al~~~~iL~yIH~~F~rsp~tCL~~~~~~-wpR~GIlRveI~~n~-~~~~ 91 (375)
T PF09746_consen 14 HALFFRVALAYARLFPPPVRRFIEFIVLLKALFLFFILIYIHIAFSRSPITCLDHVKDD-WPRDGILRVEIVRNL-ESKN 91 (375)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHhhcc-ccccceeEEEEecCC-Cccc
Confidence 3569999999999999999999999999999999999999999999 999999999996 999999999999975 2222
Q ss_pred CCCCcccccccccccccccccccCCCCcchhhhhhhhhhhhhcccccccccceecccCCCccccCccccCCCCCCCCCCc
Q 005878 83 DSDSNVVDVTSVDNAINELEVSGMDADGLTFSAANLWLNWIHSNVRKGKLALKFWRTDMEPVEHLAEGSVSSQSFKPTDS 162 (672)
Q Consensus 83 ~~~~~i~~~~~~~~~~~kl~~~~vd~~~~~~~~~~~~~~~lg~~ar~g~~~~~f~~~~~~~iE~~~~~~~~~~~~~~~~d 162 (672)
+.. .+..++++.....+.+... +|++.+.++.+. +.-+.
T Consensus 92 -----i~~---~~~~ee~L~r~~qep~s~s-------------------------------iEpsTteeelt~--el~~~ 130 (375)
T PF09746_consen 92 -----IFQ---QYYDEESLLRNVQEPGSYS-------------------------------IEPSTTEEELTT--ELFQN 130 (375)
T ss_pred -----hhh---hhhhhcchhhhhccccccC-------------------------------cCccccchhhhH--hhhhc
Confidence 222 2233455543332222100 222211111000 00000
Q ss_pred cc--ccccccccccccccChhhhhccccccccccccchhhHHHHhhHHhhhhhhhhhhhcccccccCccccccccccccc
Q 005878 163 AV--NKIDKEEARNSFALSAKEAFKSAIIHFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVPKLMHLLYLDRI 240 (672)
Q Consensus 163 ~~--~~~~~ee~~~~~~~s~~e~~kaav~~~~~kw~~ris~~~~~~~~i~~~f~klw~i~g~~~~~d~pk~~~~~~~d~~ 240 (672)
.- ...+.+. . ....+++... .. +..+.....|.+
T Consensus 131 ~s~kl~~~~~~---~-~~~~~~~~~~---~~--------------------------d~~~~~~~~~~~----------- 166 (375)
T PF09746_consen 131 SSIKLESDLEP---S-FLSSDSSLNN---TF--------------------------DEDNISDTFDFE----------- 166 (375)
T ss_pred ccccccccccc---c-ccCCcccccc---cc--------------------------cccccccccccc-----------
Confidence 00 0000000 0 0000000000 00 000000001111
Q ss_pred hhhHHHHHhhhcccCCCeEEEeccceeeccCcccccccCceEEEEEeCC-CCCCCcchHHHHHHHhhcCchHHHHhhhh-
Q 005878 241 HSYAVQWLENRTKAFEPTYLYTMEKGYFLLPEADKSRHNIRTFNISISA-QHPCFGNRWQQLLINRFVGYDTILMNSLL- 318 (672)
Q Consensus 241 ~~~~v~~~e~~~k~~E~~YeYSlEyGfLrLs~~aR~r~NIpt~~VtLd~-~~~CFGd~~srlLL~~FlGYDdILmNSlk- 318 (672)
. +.+--.+....+||+||||+||||||||+++|++|||||++|+||+ +|+||||+|+|++|++|+||||++|+|+|
T Consensus 167 -~-~~~~~~~~~~~~~y~veYsleyG~LrLs~~~r~~~nI~~~~v~ldp~~~~CfG~~~~r~ll~~f~GYd~~lm~s~k~ 244 (375)
T PF09746_consen 167 -E-IMQLKNKVWPQDEYIVEYSLEYGFLRLSEATRQRHNIPVMVVTLDPAKDQCFGDRFSRLLLDEFLGYDDILMSSLKT 244 (375)
T ss_pred -h-hhcccccCCcccceeEEeehhcchhcCCHHHHhhcCCeEEEEEECCCCCCccCchHHHHhhhhhcCccHHHHHHHHH
Confidence 0 0000111223468899999999999999999999999999999996 99999999999999999999999999999
Q ss_pred ---ccCCceeEEecccCeEEeeccccCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhHHHHHHHHhh
Q 005878 319 ---HTPGQGYLYNCQTKEFYNLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQH 395 (672)
Q Consensus 319 ---~~~gkGYLrNv~TgE~Yrlv~~~~~~~~~ar~~~ylv~k~~VlimsLFvfF~fT~sVSfLLReSq~rifvFiVdL~~ 395 (672)
+++|||||||++|||||||+++|. ++| ++|++ ++|+|++||++|||||||||||||+|||||+|
T Consensus 245 la~~e~~~GyL~n~~t~e~y~fv~~~~----~~r-~sy~~--------a~~~m~~ft~svs~lLR~s~~qif~fiv~ll~ 311 (375)
T PF09746_consen 245 LAENEDNKGYLRNVVTGEHYRFVSMWW----MAR-SSYLA--------AFFVMLIFTFSVSMLLRYSHHQIFVFIVDLLQ 311 (375)
T ss_pred HhcCCCCceeeeecccccceehhhhhh----hhc-cHHHH--------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 478999999999999999998863 233 35654 67888999999999999999999999999999
Q ss_pred hhhccccchhHHHHHHHHHhhhHHhHhHHHHHHHHhcccchhHHHHHHHHHHhhhhhceeeccccccc
Q 005878 396 HAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAFLVLILVWLCELFTLISVRTPISMK 463 (672)
Q Consensus 396 ~~r~~~P~a~Ll~~hVi~sLVFVpvmIGM~afMsEFFnD~~lAFyViLiVWladqfdaI~~RT~iSkr 463 (672)
|++++.|++ .|++..|++|++||||+|||+|||||++|||||||+||+|||||+|||||++|||
T Consensus 312 ~~~~~~~~~----~p~a~llt~il~lvgm~~~m~eff~d~~~af~vil~vw~~d~~~~i~c~t~~~~r 375 (375)
T PF09746_consen 312 MLEHNLPIF----FPAAPLLTVILALVGMEAIMSEFFNDTTTAFYVILIVWLADQYDAICCHTPISKR 375 (375)
T ss_pred HHHhcCccc----cccceeeeeehhhHHHHHHHHHHhcchhHHHHHHHHHHHHhhccEEEecCccCCC
Confidence 998887632 3556666778888899999999999999999999999999999999999999997
No 2
>KOG2092 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.2e-59 Score=476.73 Aligned_cols=368 Identities=57% Similarity=0.876 Sum_probs=319.2
Q ss_pred EeccceeeccCcccccccCceEEEEEeCCCCCCCcchHHHHHHHhhcCchHHHHhhhhccCCceeEEecccCeEEeeccc
Q 005878 261 YTMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLLHTPGQGYLYNCQTKEFYNLSYA 340 (672)
Q Consensus 261 YSlEyGfLrLs~~aR~r~NIpt~~VtLd~~~~CFGd~~srlLL~~FlGYDdILmNSlk~~~gkGYLrNv~TgE~Yrlv~~ 340 (672)
|.+|+|+..+|++++-+||| +-++.+.++++|||++|++++++.++||||+|++++.+.-+.||.| .+|.|.-||
T Consensus 1 ~~~~~~~~~~P~~~~p~~N~-~~~~~~~ar~P~~pn~~q~~~~N~lv~~rdrlfhal~~~~a~~Ys~-~~~~~frrl--- 75 (381)
T KOG2092|consen 1 YTMEKGYFLLPDEAKPRHNI-TANVSISARHPCFPNRWQQLLINRLVGYRDRLFHALQNSAAQGYSY-YQTREFRRL--- 75 (381)
T ss_pred CchhhcccCCCCCCCCCCCC-CCCCCcccCCCCCCchhhhhcccccccHHHHHHHHHHHHHhhhhhh-ccCHHHHhc---
Confidence 57899999999999999999 6889999999999999999999999999999999999999999999 888887554
Q ss_pred cCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhHHHHHHHHhhhhhccccchhHHHHHHHHHhhhHHh
Q 005878 341 QEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPI 420 (672)
Q Consensus 341 ~~~~~~~ar~~~ylv~k~~VlimsLFvfF~fT~sVSfLLReSq~rifvFiVdL~~~~r~~~P~a~Ll~~hVi~sLVFVpv 420 (672)
+++++-++.|++.||+++|+++|++ +++.+++.||+++.||..|.|++++|..++.|++.++.+|++.++||+|+
T Consensus 76 ---~egs~lf~a~lvl~~l~~ihi~F~r--sp~scl~~~r~~w~R~gi~rVev~~H~s~r~p~Fl~f~~~~~~~~vF~~~ 150 (381)
T KOG2092|consen 76 ---PEGSALFGAYLVLKCLVLIHILFVR--SPMSCLFTLRETWTRMGIFRVEVQHHASHRLPTFLLFFVHVIESLVFVPI 150 (381)
T ss_pred ---cchHHHHHHHHHHHHHHHHHHHhhc--CchHHHHHHHhhhhhheeEEEEEEecchhcchHHHHHHhhhcccccccch
Confidence 5677888999999999999999987 78999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHhcccchhHHHHHHHHHHhhhhhceeecccccccchhHHHH--HHHHHhhheeeeecccchhHHHHHHHHH
Q 005878 421 MIGILFFLFEFYDDQLLAFLVLILVWLCELFTLISVRTPISMKFFPRFFL--LYFLVFHIYFFSYAYGFSYMALGTAAAF 498 (672)
Q Consensus 421 mIGM~afMsEFFnD~~lAFyViLiVWladqfdaI~~RT~iSkr~wpRfFy--LYf~~Fh~Yfysy~ygFSyLAL~ts~lF 498 (672)
+||+..+++||++|+..+||+++.+|+|+.|.+++.||+++|+|+||+|+ +|.+.||+|||+|.||++|++..++..+
T Consensus 151 aI~i~s~l~~~~~e~~e~~m~~~~~~~~~~f~ld~e~~~i~k~~~p~e~Lnd~~e~~fh~~~f~~~~g~~Y~veyt~~yg 230 (381)
T KOG2092|consen 151 AIGILSFLFEFYDEQLEAFMVLVLVWLCELFTLDSERTPISKKFFPREFLNDLYELVFHIYFFSYAYGFSYLVEYTTAYG 230 (381)
T ss_pred hhhHHHhhHHHhcccHHHHHHHHHHHHHHheeeecccccccCCCCcHHHhcchhhcccchhhhhhccCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHhhccchHHHHHHH-HHHHhhhcCCCcccccccccccceeEeecccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 005878 499 VQHLILYFWNHFEVPALQRFIQ-NRRTQLQQQPDFHITSSTILASTLHITRLNTRNPSLPNTDATSGPGLRPGSNQAMPP 577 (672)
Q Consensus 499 i~HsMLyF~h~yElPal~r~~~-~r~~~~~~~~~~~~~~st~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (672)
++|+.+|||+|+|+|+++++++ +|+...+|+|.+++++++++++|+|++ +|....+..+.+..- ....+..-...+
T Consensus 231 ~lrL~~~fr~r~~IP~~~~~ldt~~Qcfgdq~~rl~i~~f~gy~dtl~~t-l~~~a~N~~~~G~lh--n~q~~ehy~Fva 307 (381)
T KOG2092|consen 231 MLRLILYFRNRFEIPALQRFLDTSRQCFGDQHPRLHITSFTGYADTLHIT-LNRTARNRTPSGPLH--NTQNTEHYSFVA 307 (381)
T ss_pred HHhccHHHHHhcCCceEEEEecchhhhhhhhhhhHHHHHHhhHHHHHHHH-HHHHHhccCCCCccc--cccccceEEEee
Confidence 9999999999999999999999 778889999999999999999999999 776555443322211 112223333333
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCC-CCCCCCCCCCCchhhH--HHHHHhcCCCccchhhhhhhhhhhhcc
Q 005878 578 TNRVDAPGPERSENNNPDRVGNTMEIPGQPDLQ-QPETGPNPGSMNSFSS--LLLWILGGASSEGLNSFLSMFRDVREQ 653 (672)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~-~~~~~~~~~~~~~~~s--~~~w~lg~~~~~~~~s~~~~frd~r~~ 653 (672)
||.|+.. -.+.......| ..|..+-+| +. +.|-+|+| |++|+||||+++|++++++||+|+++.
T Consensus 308 -~~~g~as---Yl~a~a~m~if--T~~~smllrysh------hqifvFi~dll~m~el~~a~~~p~aplltv~lalvg~ 374 (381)
T KOG2092|consen 308 -DGGGVAS---YLEAQAEMEIF--TVPASMLLRYSH------HQIFVFISDLLLMWELGGASSEPLAPLLTVFLALVGE 374 (381)
T ss_pred -ccccHHH---HHHHhhhHhhe--eccccccccccc------cceeehHHHHHHHHHhCCCCCcccchHHHHHHHHhCc
Confidence 3333311 11111222223 233344444 44 78999999 999999999999999999999999983
No 3
>KOG2092 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.1e-43 Score=359.37 Aligned_cols=313 Identities=20% Similarity=0.220 Sum_probs=211.9
Q ss_pred chHHHHHHHHhhhcChhhhhHHHHHHHHHHHHHHHHHHhhhhhcc-cCCCccccccCCccCccceEEEEEeccCccccCC
Q 005878 5 HTFIRVQERFSRVLTPRVRAYLEYIYLFIAITLFCVLVVMHANYV-QQPGCSSEFAGIRMTEAQLIQIKISSAGLWSQND 83 (672)
Q Consensus 5 ~~f~rv~~~~a~~~~p~vR~~lEyi~L~~Ai~~f~vL~~mH~nf~-~~pgCl~~~~~~~~p~~~ilqVkI~s~g~ws~~~ 83 (672)
..+.|+..-++..+||..||++|.-.||+|.+++.+|++||++|+ .|.+|++++++- |+|-||+|||.-+--+
T Consensus 55 al~~~~a~~Ys~~~~~~frrl~egs~lf~a~lvl~~l~~ihi~F~rsp~scl~~~r~~-w~R~gi~rVev~~H~s----- 128 (381)
T KOG2092|consen 55 ALQNSAAQGYSYYQTREFRRLPEGSALFGAYLVLKCLVLIHILFVRSPMSCLFTLRET-WTRMGIFRVEVQHHAS----- 128 (381)
T ss_pred HHHHHHhhhhhhccCHHHHhccchHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhh-hhhheeEEEEEEecch-----
Confidence 356788888899999999999999999999999999999999999 999999999996 9999999999986221
Q ss_pred CCCcccccccccccccccccccCC-CCcchhhhhhhhhhhhhcccccccccceecccCCCccccCccccCCCCCCCCCCc
Q 005878 84 SDSNVVDVTSVDNAINELEVSGMD-ADGLTFSAANLWLNWIHSNVRKGKLALKFWRTDMEPVEHLAEGSVSSQSFKPTDS 162 (672)
Q Consensus 84 ~~~~i~~~~~~~~~~~kl~~~~vd-~~~~~~~~~~~~~~~lg~~ar~g~~~~~f~~~~~~~iE~~~~~~~~~~~~~~~~d 162 (672)
.-. .++.+--++ +.+..|. +.+ |++-..-++..
T Consensus 129 ----~r~--------p~Fl~f~~~~~~~~vF~---------~~a-----------------I~i~s~l~~~~-------- 162 (381)
T KOG2092|consen 129 ----HRL--------PTFLLFFVHVIESLVFV---------PIA-----------------IGILSFLFEFY-------- 162 (381)
T ss_pred ----hcc--------hHHHHHHhhhccccccc---------chh-----------------hhHHHhhHHHh--------
Confidence 100 111110000 0000000 000 11110000000
Q ss_pred ccccccccccccccccChhhhhccccccccccccchhhHHHHhhHHhhhhhhhhhhhcccccccCccccccccccccch-
Q 005878 163 AVNKIDKEEARNSFALSAKEAFKSAIIHFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVPKLMHLLYLDRIH- 241 (672)
Q Consensus 163 ~~~~~~~ee~~~~~~~s~~e~~kaav~~~~~kw~~ris~~~~~~~~i~~~f~klw~i~g~~~~~d~pk~~~~~~~d~~~- 241 (672)
.|+. |+.-..+- .|-...=.+++ -|+|-..+-.....+|
T Consensus 163 ------~e~~---------e~~m~~~~------------~~~~~~f~ld~-------------e~~~i~k~~~p~e~Lnd 202 (381)
T KOG2092|consen 163 ------DEQL---------EAFMVLVL------------VWLCELFTLDS-------------ERTPISKKFFPREFLND 202 (381)
T ss_pred ------cccH---------HHHHHHHH------------HHHHHheeeec-------------ccccccCCCCcHHHhcc
Confidence 0000 11110000 00000000000 0000000000000000
Q ss_pred ---hhHHHHHhhhcccCCCeEEEeccceeeccCcccccccCceEEEEEeCCCCCCCcchHHHHHHHhhcCchHHHHhhhh
Q 005878 242 ---SYAVQWLENRTKAFEPTYLYTMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLL 318 (672)
Q Consensus 242 ---~~~v~~~e~~~k~~E~~YeYSlEyGfLrLs~~aR~r~NIpt~~VtLd~~~~CFGd~~srlLL~~FlGYDdILmNSlk 318 (672)
-..-...=+--+-++|.+||+++||+|||++..|+|++||+++++||+++|||||+..|++|+.|+||||++|.+++
T Consensus 203 ~~e~~fh~~~f~~~~g~~Y~veyt~~yg~lrL~~~fr~r~~IP~~~~~ldt~~Qcfgdq~~rl~i~~f~gy~dtl~~tl~ 282 (381)
T KOG2092|consen 203 LYELVFHIYFFSYAYGFSYLVEYTTAYGMLRLILYFRNRFEIPALQRFLDTSRQCFGDQHPRLHITSFTGYADTLHITLN 282 (381)
T ss_pred hhhcccchhhhhhccCchHHHHHHHHHHHHhccHHHHHhcCCceEEEEecchhhhhhhhhhhHHHHHHhhHHHHHHHHHH
Confidence 00000011122236688899999999999999999999999999999999999999999999999999999999987
Q ss_pred ----ccCCceeEEecccCeEEeeccccCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhHHHHHHHHh
Q 005878 319 ----HTPGQGYLYNCQTKEFYNLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQ 394 (672)
Q Consensus 319 ----~~~gkGYLrNv~TgE~Yrlv~~~~~~~~~ar~~~ylv~k~~VlimsLFvfF~fT~sVSfLLReSq~rifvFiVdL~ 394 (672)
|..++||++|.+|+|||+|+..+. ++ .+|+.+.. + |.+||+.+||+|||+|||||+||+||+
T Consensus 283 ~~a~N~~~~G~lhn~q~~ehy~Fva~~~-----g~-asYl~a~a---~-----m~ifT~~~smllryshhqifvFi~dll 348 (381)
T KOG2092|consen 283 RTARNRTPSGPLHNTQNTEHYSFVADGG-----GV-ASYLEAQA---E-----MEIFTVPASMLLRYSHHQIFVFISDLL 348 (381)
T ss_pred HHHhccCCCCccccccccceEEEeeccc-----cH-HHHHHHhh---h-----HhheeccccccccccccceeehHHHHH
Confidence 468899999999999999997653 33 57886332 3 345699999999999999999999999
Q ss_pred hhh----hccccchhHHHHHHHHHhhhHHhHhHHHHHHHHhcc
Q 005878 395 HHA----QHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYD 433 (672)
Q Consensus 395 ~~~----r~~~P~a~Ll~~hVi~sLVFVpvmIGM~afMsEFFn 433 (672)
++. ....|++||+ +|+++|| ||+ |+|||+
T Consensus 349 ~m~el~~a~~~p~apll--tv~lalv------g~~--~aefF~ 381 (381)
T KOG2092|consen 349 LMWELGGASSEPLAPLL--TVFLALV------GED--EAEFFA 381 (381)
T ss_pred HHHHhCCCCCcccchHH--HHHHHHh------Cch--hhhhcC
Confidence 875 4456999986 7888887 999 999996
No 4
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=35.61 E-value=36 Score=38.75 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=33.4
Q ss_pred hHHHHHHHHh-----hhcChhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 005878 6 TFIRVQERFS-----RVLTPRVRAYLEYIYLFIAITLFCVLVVMHAN 47 (672)
Q Consensus 6 ~f~rv~~~~a-----~~~~p~vR~~lEyi~L~~Ai~~f~vL~~mH~n 47 (672)
+..++.+-.. ..+-+.+|...||-+.++||.++|+|..||++
T Consensus 385 ~~~kie~~~~~ik~~e~~l~~~~~r~e~~~~i~aI~l~~~llk~HV~ 431 (446)
T KOG4438|consen 385 KVKKIEEKNEEIKKIELFLEIARGREELESQIVAITLECILLKMHVE 431 (446)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666553 33348999999999999999999999999965
No 5
>COG4168 SapB ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=31.55 E-value=2.7e+02 Score=30.46 Aligned_cols=113 Identities=23% Similarity=0.372 Sum_probs=71.2
Q ss_pred cchhHHHHHHHHHhhh-HHhHhHHHH-HHHHhcccchhHHHHHHHHHHhhhhhceeecccccccchhHHHHHHHHHhhhe
Q 005878 402 PTFQLIFVHVIESLVF-VPIMIGILF-FLFEFYDDQLLAFLVLILVWLCELFTLISVRTPISMKFFPRFFLLYFLVFHIY 479 (672)
Q Consensus 402 P~a~Ll~~hVi~sLVF-VpvmIGM~a-fMsEFFnD~~lAFyViLiVWladqfdaI~~RT~iSkr~wpRfFyLYf~~Fh~Y 479 (672)
|+..|-+...+++++| .|+ ||++ .+++=+-|+.+.+.-.+ -|++ --||.-...+|+++.|..
T Consensus 76 aT~ELC~~af~lal~~GiPl--G~iagv~~~kw~d~~is~~s~~------G~Si--------PvFWlAl~ll~ffslh~~ 139 (321)
T COG4168 76 ATMELCFLAFGLALIVGIPL--GMIAGVTRHKWLDKLISAISLL------GFSI--------PVFWLALLLLLFFSLHLG 139 (321)
T ss_pred cHHHHHHHHHHHHHHHcccH--HHHHHhhhhhHHHHHHHHHHHh------ccCc--------hHHHHHHHHHHHHHHhcc
Confidence 3456666667777665 454 7775 55666666665554221 1222 137888889999999999
Q ss_pred eeeecccch---------hHHHHHHHH------------HHHHHHHHHHhhccchH--HHHHHHHHHHhhhcCC
Q 005878 480 FFSYAYGFS---------YMALGTAAA------------FVQHLILYFWNHFEVPA--LQRFIQNRRTQLQQQP 530 (672)
Q Consensus 480 fysy~ygFS---------yLAL~ts~l------------Fi~HsMLyF~h~yElPa--l~r~~~~r~~~~~~~~ 530 (672)
-+.--+||. ++|++-.|+ .+||+.|=..--=-.|. +-|.+++|-+.+.+|-
T Consensus 140 ~~pv~GrydLLY~ikpiTGfalIDaw~s~spyRt~~~qs~lqHl~LP~lvL~iaPTtevir~mr~s~~~Vl~qN 213 (321)
T COG4168 140 WLPVSGRYDLLYEIKPITGFALIDAWLSDSPYRTEMIQSAIQHLILPTLVLSVAPTTEVIRLMRQSTEEVLNQN 213 (321)
T ss_pred ceecccceeeeeeeccccccHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhh
Confidence 999888884 788888886 35566543322222232 3477777766666554
No 6
>KOG4220 consensus Muscarinic acetylcholine receptor [Signal transduction mechanisms]
Probab=23.28 E-value=1.3e+03 Score=27.27 Aligned_cols=124 Identities=16% Similarity=0.195 Sum_probs=55.9
Q ss_pred hheeeeecccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhcCCCccccccccccccee----EeecccC
Q 005878 477 HIYFFSYAYGFSYMALGTAAAFVQHLILYFWNHFEVPALQRFIQNRRTQLQQQPDFHITSSTILASTLH----ITRLNTR 552 (672)
Q Consensus 477 h~Yfysy~ygFSyLAL~ts~lFi~HsMLyF~h~yElPal~r~~~~r~~~~~~~~~~~~~~st~~~~~~~----~~~~~~~ 552 (672)
|+=|++=|+=--+-|..+-++=..-+.+.||+=| |--++|..++...++-....+++--+..| ..+-+.+
T Consensus 184 ~iQFlsnp~iTfGTAiAAFYlPVtiM~~LY~rIy------ret~kR~k~~~~lq~s~~~~~~~~~~~~~~~~~~~~s~r~ 257 (503)
T KOG4220|consen 184 YIQFLSNPAITFGTAIAAFYLPVTIMTILYWRIY------RETRKRQKELAKLQASLPSFSAIKLSPESPKGDSKSSGRS 257 (503)
T ss_pred EEEeecCceeehhHHHHHHHhhHHHHHHHHHHHH------HHHHHHHHhhhhcccccccccccccCcccccccccCCCCC
Confidence 6777775554445555555555555666677655 23344544444444333333444444444 2233333
Q ss_pred CCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCccCCCC
Q 005878 553 NPSLPNT-DATSGPGLRPGSNQAMPPTNRVDAPGP-ERSENNNPDRVGNTMEIPGQ 606 (672)
Q Consensus 553 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~n~~~~~~~ 606 (672)
.|+.++. +...+++.+.+..++.+.++..-.... +..+..-.+..++|+..|+.
T Consensus 258 ~p~~~~~~~~~~~~~~~~~k~ps~~~~~~~~~s~~edsd~~~~~s~~~s~~~~~~s 313 (503)
T KOG4220|consen 258 SPSEEGKREPLTNGCISNSKAPSLTPTESWKPSEKEDSDESSSESLTSSPLERPGS 313 (503)
T ss_pred CCccccccccCCCCccccccCcccCCccCCCCccccccccccccccccCCcccccc
Confidence 3433332 222233334444444444332211111 22222223456677777754
No 7
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=22.61 E-value=2.7e+02 Score=28.50 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=18.3
Q ss_pred CCCcchHHHHHHHhhcCchHHHHhhhhc
Q 005878 292 PCFGNRWQQLLINRFVGYDTILMNSLLH 319 (672)
Q Consensus 292 ~CFGd~~srlLL~~FlGYDdILmNSlk~ 319 (672)
+|=||.-++.-++. -||.|||.+++.
T Consensus 19 ~y~gd~~~~~~IEa--AYD~ILM~rL~~ 44 (194)
T PF11833_consen 19 QYAGDEKSREAIEA--AYDAILMERLRQ 44 (194)
T ss_pred HhcCCHHHHHHHHH--HHHHHHHHHHHH
Confidence 44466655555543 599999999984
No 8
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=21.36 E-value=8.1e+02 Score=24.30 Aligned_cols=28 Identities=11% Similarity=0.166 Sum_probs=21.0
Q ss_pred hHHHHHHHHhcccchhHHHHHHHHHHhh
Q 005878 422 IGILFFLFEFYDDQLLAFLVLILVWLCE 449 (672)
Q Consensus 422 IGM~afMsEFFnD~~lAFyViLiVWlad 449 (672)
+++-.+++-+++++..|.-+.+.+|+.=
T Consensus 172 ~sl~~~~S~~~~~~~~a~~~~~~~~~~~ 199 (277)
T PF12679_consen 172 ISLGLLISSLFRSSASAILASLGLLFLL 199 (277)
T ss_pred HHHHHHHHHHHCcHHHHHHHHHHHHHHH
Confidence 5666777888898888888777777544
No 9
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=20.17 E-value=2.3e+02 Score=29.65 Aligned_cols=26 Identities=12% Similarity=0.001 Sum_probs=14.8
Q ss_pred hheeeeecc-cchhHHHHHHHHHHHHH
Q 005878 477 HIYFFSYAY-GFSYMALGTAAAFVQHL 502 (672)
Q Consensus 477 h~Yfysy~y-gFSyLAL~ts~lFi~Hs 502 (672)
|||==-..+ .|..|+=+|-..+-..+
T Consensus 93 hIy~~d~~v~d~~~lv~~ck~Fl~~~s 119 (205)
T PF12238_consen 93 HIYKEDSEVKDYNGLVKFCKDFLDSES 119 (205)
T ss_pred hccCcccccccHHHHHHHHHHHhcccc
Confidence 665544555 55666666665555544
No 10
>PF04290 DctQ: Tripartite ATP-independent periplasmic transporters, DctQ component; InterPro: IPR007387 The function of the members of this family is unknown, but DctQ homologues are invariably found in the tripartite ATP-independent periplasmic transporters [].
Probab=18.86 E-value=1.5e+02 Score=26.66 Aligned_cols=29 Identities=31% Similarity=0.510 Sum_probs=23.5
Q ss_pred hhhcChhhhhHHHHHHHHHHHHHHHHHHh
Q 005878 15 SRVLTPRVRAYLEYIYLFIAITLFCVLVV 43 (672)
Q Consensus 15 a~~~~p~vR~~lEyi~L~~Ai~~f~vL~~ 43 (672)
.+.+||+.|+.++.+..+.+++.+.++++
T Consensus 54 ~~~l~~~~~~~~~~i~~~~~~~~~~~l~~ 82 (133)
T PF04290_consen 54 YDRLPPRLRRILDIIASLLILVFFAVLAW 82 (133)
T ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46779999999999998877776666655
Done!