Query 005878
Match_columns 672
No_of_seqs 88 out of 90
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 09:53:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005878.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005878hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nx7_A Nematocyst outer WALL a 17.7 30 0.001 24.2 0.3 9 50-58 8-16 (28)
2 2v75_A Nuclear polyadenylated 5.4 3.7E+02 0.013 24.2 2.8 26 8-33 12-39 (104)
3 1d1r_A Hypothetical 11.4 KD pr 5.2 3E+02 0.01 25.0 2.1 34 45-78 7-42 (116)
4 2kv5_A FST, putative uncharact 5.0 4.2E+02 0.014 19.6 2.3 18 415-432 7-24 (33)
5 1vf5_H Protein PET N; photosyn 4.2 4.7E+02 0.016 18.8 2.0 12 370-381 14-25 (29)
6 1q90_N Cytochrome B6F complex 4.1 4.8E+02 0.017 19.0 2.0 13 369-381 15-27 (31)
7 2k21_A Potassium voltage-gated 3.9 6.2E+02 0.021 23.8 3.2 19 360-378 57-75 (138)
8 2pbi_A Regulator of G-protein 3.6 4E+02 0.014 28.8 1.9 45 291-338 49-106 (424)
9 1e0n_A Hypothetical protein; Y 3.4 5.2E+02 0.018 17.6 1.7 16 319-334 7-22 (27)
10 3ijm_A Uncharacterized restric 3.2 7.3E+02 0.025 23.6 3.1 19 323-341 112-130 (151)
No 1
>2nx7_A Nematocyst outer WALL antigen; cysteine rich, disulfide bonds, rich in turns, structural protein; NMR {Hydra vulgaris}
Probab=17.74 E-value=30 Score=24.23 Aligned_cols=9 Identities=78% Similarity=1.283 Sum_probs=7.2
Q ss_pred cCCCccccc
Q 005878 50 QQPGCSSEF 58 (672)
Q Consensus 50 ~~pgCl~~~ 58 (672)
|||||++.-
T Consensus 8 qqpgcssac 16 (28)
T 2nx7_A 8 QQPGCSSAC 16 (28)
T ss_dssp HSTTCCGGG
T ss_pred cCCCccccc
Confidence 899998753
No 2
>2v75_A Nuclear polyadenylated RNA-binding protein NAB2; metal-binding, nucleus, zinc-finger, nuclear PR; 1.8A {Saccharomyces cerevisiae} PDB: 2jps_A 3lcn_A
Probab=5.38 E-value=3.7e+02 Score=24.18 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=20.5
Q ss_pred HHHHHHHhhh--cChhhhhHHHHHHHHH
Q 005878 8 IRVQERFSRV--LTPRVRAYLEYIYLFI 33 (672)
Q Consensus 8 ~rv~~~~a~~--~~p~vR~~lEyi~L~~ 33 (672)
.=|.++|+.+ |+-.+.-+-|||+|++
T Consensus 12 ~ivaekL~~~~NF~EDv~YVAEyIvlLi 39 (104)
T 2v75_A 12 VIVAEKLAGIPNFNEDIKYVAEYIVLLI 39 (104)
T ss_dssp HHHHHHHTTSTTCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHccccCccccHHHHHHHhheee
Confidence 3477888744 8888999999998886
No 3
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1
Probab=5.17 E-value=3e+02 Score=25.02 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=13.1
Q ss_pred hhhcccCCC--ccccccCCccCccceEEEEEeccCc
Q 005878 45 HANYVQQPG--CSSEFAGIRMTEAQLIQIKISSAGL 78 (672)
Q Consensus 45 H~nf~~~pg--Cl~~~~~~~~p~~~ilqVkI~s~g~ 78 (672)
+++|++-+| |-+.-....-+++|.|+|.+.|+|.
T Consensus 7 ~~vyst~~~~~~~~~~~~~~p~~~~~V~I~~er~gR 42 (116)
T 1d1r_A 7 RLVYSTETGRIDEPKAAPVRPKGDGVVRIQRQTSGR 42 (116)
T ss_dssp ---------------------CCCCEEEEEECCCSS
T ss_pred cEEEeCCCCccCccccccCCCCCCCeEEEEEEeCCC
Confidence 456775555 5443223324578999999999886
No 4
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=5.01 E-value=4.2e+02 Score=19.59 Aligned_cols=18 Identities=28% Similarity=0.626 Sum_probs=13.0
Q ss_pred hhhHHhHhHHHHHHHHhc
Q 005878 415 LVFVPIMIGILFFLFEFY 432 (672)
Q Consensus 415 LVFVpvmIGM~afMsEFF 432 (672)
++.+|+.||++--|++-.
T Consensus 7 ~IIaPivVGvvl~L~d~W 24 (33)
T 2kv5_A 7 LVIAPIFVGLVLEMISRV 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344789999988776654
No 5
>1vf5_H Protein PET N; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.27.1 PDB: 2d2c_H* 2e74_H* 2e75_H* 2e76_H* 2zt9_H*
Probab=4.20 E-value=4.7e+02 Score=18.84 Aligned_cols=12 Identities=17% Similarity=0.188 Sum_probs=8.2
Q ss_pred HHHHHhHHhhhh
Q 005878 370 TTTMSVSFTLRE 381 (672)
Q Consensus 370 ~fT~sVSfLLRe 381 (672)
+||.++|++.+.
T Consensus 14 vftfSlslVVWG 25 (29)
T 1vf5_H 14 VFTWSIAMVVWG 25 (29)
T ss_dssp HHHHHHHHHHHH
T ss_pred HhheeeeEEEEe
Confidence 446688887664
No 6
>1q90_N Cytochrome B6F complex subunit PETN; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.27.1
Probab=4.07 E-value=4.8e+02 Score=19.04 Aligned_cols=13 Identities=15% Similarity=0.207 Sum_probs=8.6
Q ss_pred HHHHHHhHHhhhh
Q 005878 369 FTTTMSVSFTLRE 381 (672)
Q Consensus 369 F~fT~sVSfLLRe 381 (672)
.+||.++|++.+.
T Consensus 15 vvfTfSlslVVWG 27 (31)
T 1q90_N 15 VMFSFSLSLVVWG 27 (31)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHhheeeEEEEEe
Confidence 3456688887663
No 7
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=3.87 E-value=6.2e+02 Score=23.82 Aligned_cols=19 Identities=26% Similarity=0.681 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhHHh
Q 005878 360 VLMMSLFVFFTTTMSVSFT 378 (672)
Q Consensus 360 VlimsLFvfF~fT~sVSfL 378 (672)
.++|.+|-||+..+.+|++
T Consensus 57 L~vmgffgff~~GImLsYi 75 (138)
T 2k21_A 57 LMVLGFFGFFTLGIMLSYI 75 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4678889888887777764
No 8
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=3.62 E-value=4e+02 Score=28.80 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=31.4
Q ss_pred CCCC-cchHHHHHHHhhcCchHHHHhhhhc---cCCceeEEeccc---------CeEEeec
Q 005878 291 HPCF-GNRWQQLLINRFVGYDTILMNSLLH---TPGQGYLYNCQT---------KEFYNLS 338 (672)
Q Consensus 291 ~~CF-Gd~~srlLL~~FlGYDdILmNSlk~---~~gkGYLrNv~T---------gE~Yrlv 338 (672)
..|| |..+..+|++++ +.|+ --++.- --..||++.+.. +-.|||.
T Consensus 49 p~~F~Gsd~V~WL~~~~-~~~~--~EA~~lg~~L~~~Gyi~~v~d~~~~~fk~d~~~Yrfq 106 (424)
T 2pbi_A 49 PHAMTGGDVLQWITQRL-WISN--LEAQNLGNFIVKYGYIYPLQDPKNLILKPDSSLYRFQ 106 (424)
T ss_dssp CCCEEHHHHHHHHHHHH-TCCH--HHHHHHHHHHHHTTSEEESSSTTCCSCCSSSCEEEEC
T ss_pred CCccccHHHHHHHHHcC-CCCh--HHHHHHHHHHHHCCCEEeCCccccccccCCCeeEEeC
Confidence 4899 999999999998 5665 233321 134788887754 4578886
No 9
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=3.43 E-value=5.2e+02 Score=17.62 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=12.8
Q ss_pred ccCCceeEEecccCeE
Q 005878 319 HTPGQGYLYNCQTKEF 334 (672)
Q Consensus 319 ~~~gkGYLrNv~TgE~ 334 (672)
.+.|+=|.+|..|||-
T Consensus 7 ~~~g~~YYyN~~T~~s 22 (27)
T 1e0n_A 7 HENGRPLYYNAEQKTK 22 (27)
T ss_dssp ESSSSEEEEETTTTEE
T ss_pred CCCCCeEEEECCCCCE
Confidence 3577889999999873
No 10
>3ijm_A Uncharacterized restriction endonuclease-like FOL superfamily protein; DUF820, cyanobacteria, PD(D/E)XK superfamily, structural GEN PSI-2; 1.70A {Spirosoma linguale}
Probab=3.24 E-value=7.3e+02 Score=23.57 Aligned_cols=19 Identities=16% Similarity=0.630 Sum_probs=17.0
Q ss_pred ceeEEecccCeEEeecccc
Q 005878 323 QGYLYNCQTKEFYNLSYAQ 341 (672)
Q Consensus 323 kGYLrNv~TgE~Yrlv~~~ 341 (672)
.||+||..|++-++++.+-
T Consensus 112 EGFVynYkt~~W~rYr~g~ 130 (151)
T 3ijm_A 112 EGFVFNYKTQQWLRYRLGD 130 (151)
T ss_dssp EEEEEETTTTEEEEEETTS
T ss_pred eeeeEeeccCceeEEEcCC
Confidence 8999999999999998643
Done!