Query 005878
Match_columns 672
No_of_seqs 88 out of 90
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 09:53:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005878.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005878hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hr6a2 d.185.1.1 (A:234-470) 4.3 84 0.0061 27.9 -0.0 29 627-657 45-81 (237)
2 d1o6wa1 b.72.1.1 (A:1-29) Spli 4.1 1.9E+02 0.014 19.0 1.7 16 319-334 9-24 (29)
3 d1ywia1 b.72.1.1 (A:15-42) Hun 3.9 1.9E+02 0.014 18.8 1.5 16 319-334 8-23 (28)
4 d1krha2 c.25.1.2 (A:206-338) B 2.5 67 0.0049 25.7 -2.5 23 629-654 9-31 (133)
5 d2pila_ d.24.1.1 (A:) Pilin Gc 2.4 4.3E+02 0.031 20.1 2.5 12 50-61 32-43 (158)
6 d2acya_ d.58.10.1 (A:) Acylpho 2.3 4.8E+02 0.035 20.1 2.7 34 307-340 20-53 (98)
7 d2cosa1 a.5.2.1 (A:8-48) Serin 2.3 5.3E+02 0.038 17.8 2.5 19 12-30 21-39 (41)
8 d2dk1a1 b.72.1.1 (A:7-44) WW d 2.2 3.5E+02 0.025 18.4 1.4 16 319-334 8-23 (38)
9 d1k0ma1 a.45.1.1 (A:92-240) Ch 2.2 5.7E+02 0.042 20.6 3.2 30 505-538 101-134 (149)
10 d1jt6a2 a.121.1.1 (A:73-187) M 2.2 6.4E+02 0.046 20.0 3.4 26 500-525 24-50 (115)
No 1
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.32 E-value=84 Score=27.88 Aligned_cols=29 Identities=34% Similarity=0.434 Sum_probs=19.4
Q ss_pred HHHHHhcCCCc-------cchhhhhhhhhhhhcc-cccc
Q 005878 627 LLLWILGGASS-------EGLNSFLSMFRDVREQ-GQVF 657 (672)
Q Consensus 627 ~~~w~lg~~~~-------~~~~s~~~~frd~r~~-~~~~ 657 (672)
+|==||||..+ +|..| ..|+.+|+. |.+|
T Consensus 45 vl~~iLGG~~~~~~~~~g~G~sS--rL~~~lre~~gLay 81 (237)
T d1hr6a2 45 TLQTLLGGGGSFSAGGPGKGMYS--RLYTHVLNQYYFVE 81 (237)
T ss_dssp HHHHHHCEEESSCCSSTTSCTTS--HHHHHTTTTCSSEE
T ss_pred HHHHHhCCCcccccCCCCCCccc--HHHHHHHHhcCchh
Confidence 45567887543 56776 478999984 5554
No 2
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.12 E-value=1.9e+02 Score=18.96 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=13.4
Q ss_pred ccCCceeEEecccCeE
Q 005878 319 HTPGQGYLYNCQTKEF 334 (672)
Q Consensus 319 ~~~gkGYLrNv~TgE~ 334 (672)
..+|+=|-+|.+|+|-
T Consensus 9 ~~~G~~YYyN~~T~eS 24 (29)
T d1o6wa1 9 DASGRIYYYNTLTKKS 24 (29)
T ss_dssp CTTCCEEEEETTTTEE
T ss_pred CCCCCEEEeECCCCCE
Confidence 4678999999999983
No 3
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.89 E-value=1.9e+02 Score=18.76 Aligned_cols=16 Identities=38% Similarity=0.654 Sum_probs=13.3
Q ss_pred ccCCceeEEecccCeE
Q 005878 319 HTPGQGYLYNCQTKEF 334 (672)
Q Consensus 319 ~~~gkGYLrNv~TgE~ 334 (672)
..+|+=|-+|.+|+|-
T Consensus 8 ~~~G~~YYyN~~T~eS 23 (28)
T d1ywia1 8 SPDGRTYYYNTETKQS 23 (28)
T ss_dssp ETTTEEEEEETTTTEE
T ss_pred CCCCCEEEeECCCCCE
Confidence 4578999999999983
No 4
>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}
Probab=2.49 E-value=67 Score=25.74 Aligned_cols=23 Identities=39% Similarity=0.840 Sum_probs=16.3
Q ss_pred HHHhcCCCccchhhhhhhhhhhhccc
Q 005878 629 LWILGGASSEGLNSFLSMFRDVREQG 654 (672)
Q Consensus 629 ~w~lg~~~~~~~~s~~~~frd~r~~~ 654 (672)
+||-||. |+.-|.||.|+.-+++
T Consensus 9 v~IAgG~---GItP~~s~l~~~~~~~ 31 (133)
T d1krha2 9 LMLAGGT---GIAPFLSMLQVLEQKG 31 (133)
T ss_dssp EEEEEGG---GHHHHHHHHHHHHHHC
T ss_pred EEEEccH---hHHHHHHHHHHHHHcC
Confidence 4555665 8888888888775544
No 5
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=2.40 E-value=4.3e+02 Score=20.06 Aligned_cols=12 Identities=17% Similarity=-0.080 Sum_probs=7.2
Q ss_pred cCCCccccccCC
Q 005878 50 QQPGCSSEFAGI 61 (672)
Q Consensus 50 ~~pgCl~~~~~~ 61 (672)
....|.++++.+
T Consensus 32 ~~~~~~~~l~~i 43 (158)
T d2pila_ 32 QVSEAILLAEGQ 43 (158)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 445666666664
No 6
>d2acya_ d.58.10.1 (A:) Acylphosphatase {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.34 E-value=4.8e+02 Score=20.09 Aligned_cols=34 Identities=9% Similarity=-0.066 Sum_probs=23.5
Q ss_pred cCchHHHHhhhhccCCceeEEecccCeEEeeccc
Q 005878 307 VGYDTILMNSLLHTPGQGYLYNCQTKEFYNLSYA 340 (672)
Q Consensus 307 lGYDdILmNSlk~~~gkGYLrNv~TgE~Yrlv~~ 340 (672)
+||-..+........=+||++|...|+..=...+
T Consensus 20 VGFR~~v~~~A~~l~L~G~V~N~~dG~Vei~~qG 53 (98)
T d2acya_ 20 VFFRKYTQAEGKKLGLVGWVQNTDQGTVQGQLQG 53 (98)
T ss_dssp SSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEE
T ss_pred cCchHHHHHHHHHcCCEEEEEECCCCeEEEEEEE
Confidence 4555555555555555999999999987766543
No 7
>d2cosa1 a.5.2.1 (A:8-48) Serine/threonine protein kinase LATS2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.28 E-value=5.3e+02 Score=17.85 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=15.9
Q ss_pred HHHhhhcChhhhhHHHHHH
Q 005878 12 ERFSRVLTPRVRAYLEYIY 30 (672)
Q Consensus 12 ~~~a~~~~p~vR~~lEyi~ 30 (672)
.+|-|+=.+.+...||||.
T Consensus 21 ral~qt~~rsieaaie~is 39 (41)
T d2cosa1 21 RALKQTGSRSIEAALEYIS 39 (41)
T ss_dssp HHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHh
Confidence 4566888999999999985
No 8
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.20 E-value=3.5e+02 Score=18.44 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=13.2
Q ss_pred ccCCceeEEecccCeE
Q 005878 319 HTPGQGYLYNCQTKEF 334 (672)
Q Consensus 319 ~~~gkGYLrNv~TgE~ 334 (672)
..+|+=|-||.+|||-
T Consensus 8 ~~~G~~YYyN~~T~eS 23 (38)
T d2dk1a1 8 TSEGYHYYYDLISGAS 23 (38)
T ss_dssp CSTTCCCEEESSSCCE
T ss_pred CCCCCEEEEECCCCCE
Confidence 3577889999999983
No 9
>d1k0ma1 a.45.1.1 (A:92-240) Chloride intracellular channel 1 (clic1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.18 E-value=5.7e+02 Score=20.57 Aligned_cols=30 Identities=13% Similarity=0.368 Sum_probs=20.8
Q ss_pred HHHhhccc----hHHHHHHHHHHHhhhcCCCccccccc
Q 005878 505 YFWNHFEV----PALQRFIQNRRTQLQQQPDFHITSST 538 (672)
Q Consensus 505 yF~h~yEl----Pal~r~~~~r~~~~~~~~~~~~~~st 538 (672)
.++..|++ |+|++.+ ..+.+.|.+.-|.++
T Consensus 101 ~~~~~~~~~~~~p~l~~w~----~~l~~rpsf~~T~~~ 134 (149)
T d1k0ma1 101 KKYRGFTIPEAFRGVHRYL----SNAYAREEFASTCPD 134 (149)
T ss_dssp HHHHCCCCCTTCHHHHHHH----HHHHTSHHHHTTSCC
T ss_pred cccccchhhhcChHHHHHH----HHHHCChHHHHhCCC
Confidence 34445555 8888887 567788888887654
No 10
>d1jt6a2 a.121.1.1 (A:73-187) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=2.16 E-value=6.4e+02 Score=19.99 Aligned_cols=26 Identities=12% Similarity=0.354 Sum_probs=15.5
Q ss_pred HHHHHHHHh-hccchHHHHHHHHHHHh
Q 005878 500 QHLILYFWN-HFEVPALQRFIQNRRTQ 525 (672)
Q Consensus 500 ~HsMLyF~h-~yElPal~r~~~~r~~~ 525 (672)
++++..||. .++-|.+..-++..|.+
T Consensus 24 ~~a~~EF~~~~~~~~e~~~~i~~lr~~ 50 (115)
T d1jt6a2 24 QNAIIEFYTEYYKTNSINEKMNKLENK 50 (115)
T ss_dssp HHHHHHHHTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHH
Confidence 567777877 44556665555554443
Done!