BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005881
         (672 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha.
 pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha
          Length = 388

 Score = 33.9 bits (76), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 13/153 (8%)

Query: 455 YAQHGLGREALEIYSMMQENKIKPN-DNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGIS 513
           Y + G  +EA+E Y      ++KP+  + +I + +A V  G +E     + S ++    +
Sbjct: 77  YKERGQLQEAIEHYRHAL--RLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ---YN 131

Query: 514 PRMDHIASVV-HLFACRGQTRRAYE-FIKSSPIEPN-KVVWRCLLSGC--KTHKDLVLGR 568
           P +  + S + +L    G+   A   ++K+   +PN  V W  L  GC      ++ L  
Sbjct: 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNL--GCVFNAQGEIWLAI 189

Query: 569 YAAEKILSTDPEDTSAHIMLSNVYAEANMWDET 601
           +  EK ++ DP    A+I L NV  EA ++D  
Sbjct: 190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA 222


>pdb|3MYV|A Chain A, Crystal Structure Of A Susd Superfamily Protein (Bvu_0732)
           F Bacteroides Vulgatus Atcc 8482 At 1.80 A Resolution
 pdb|3MYV|B Chain B, Crystal Structure Of A Susd Superfamily Protein (Bvu_0732)
           F Bacteroides Vulgatus Atcc 8482 At 1.80 A Resolution
          Length = 454

 Score = 33.5 bits (75), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 536 YEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEA 595
           +E   S    P +  W  LL+     K  V  +YA + +   DP D   H++  N YA  
Sbjct: 250 FEIANSVDDTPGRDSWGYLLNWYGYQKGFVTQKYAEQXL--ADPGDVRGHLLEENKYAGK 307

Query: 596 NMW 598
            +W
Sbjct: 308 TVW 310


>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Mn
 pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Ca
          Length = 501

 Score = 32.3 bits (72), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 459 GLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDH 518
           GL R   +I+  M  +K+ PN+ TF       V     E  +     M +  GI PR+  
Sbjct: 85  GLSR-GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQM-KAFGIQPRLRS 142

Query: 519 IASVVHLFACRGQTRRAYE 537
               +  F  +G   +AYE
Sbjct: 143 YGPALFGFCRKGDADKAYE 161


>pdb|3ONK|A Chain A, Yeast Ent3_enth Domain
 pdb|3ONL|A Chain A, Yeast Ent3_enth-Vti1p_habc Complex Structure
 pdb|3ONL|B Chain B, Yeast Ent3_enth-Vti1p_habc Complex Structure
          Length = 150

 Score = 30.0 bits (66), Expect = 4.6,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 7/86 (8%)

Query: 461 GREALEIYSMMQ--ENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDH 518
           G E  +IY  +Q  +  IK     FI      +++  + E +HY +S  RD GI+ R   
Sbjct: 61  GSEWRQIYKALQLLDYLIKHGSERFIDDTRNSINLIRILETFHYIDSQGRDQGINVRT-R 119

Query: 519 IASVVHLFA----CRGQTRRAYEFIK 540
           + +++ L +     R + ++A E  K
Sbjct: 120 VKALIELLSDDNKIRAERKKARETAK 145


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,016,698
Number of Sequences: 62578
Number of extensions: 813929
Number of successful extensions: 1680
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1679
Number of HSP's gapped (non-prelim): 9
length of query: 672
length of database: 14,973,337
effective HSP length: 105
effective length of query: 567
effective length of database: 8,402,647
effective search space: 4764300849
effective search space used: 4764300849
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)