Query 005881
Match_columns 672
No_of_seqs 707 out of 3790
Neff 11.4
Searched_HMMs 46136
Date Thu Mar 28 15:07:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005881.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005881hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 9E-110 2E-114 916.9 77.7 668 2-671 113-780 (857)
2 PLN03081 pentatricopeptide (PP 100.0 1.7E-86 3.8E-91 714.7 64.5 533 140-672 85-618 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 1.4E-82 2.9E-87 701.3 63.5 573 39-616 49-624 (857)
4 PLN03218 maturation of RBCL 1; 100.0 4.6E-70 1E-74 587.8 54.7 528 7-549 367-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 9.4E-70 2E-74 585.0 54.4 473 39-514 85-561 (697)
6 PLN03218 maturation of RBCL 1; 100.0 8.3E-66 1.8E-70 554.9 62.5 531 72-617 366-915 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.8E-34 3.8E-39 327.9 64.2 579 19-609 304-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.8E-33 8.1E-38 317.0 64.8 518 85-613 304-868 (899)
9 PRK11447 cellulose synthase su 100.0 1.4E-25 3E-30 254.3 57.2 576 16-610 34-739 (1157)
10 PRK11447 cellulose synthase su 100.0 5E-25 1.1E-29 249.7 61.5 556 9-579 61-742 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 5.1E-23 1.1E-27 222.3 57.0 559 22-610 56-739 (987)
12 PRK09782 bacteriophage N4 rece 99.9 8.5E-22 1.8E-26 212.9 58.1 550 44-613 45-708 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 4.6E-20 1E-24 176.7 34.9 443 146-602 52-510 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 4E-19 8.7E-24 170.4 29.7 419 182-613 53-487 (966)
15 TIGR00990 3a0801s09 mitochondr 99.9 2.2E-17 4.7E-22 176.2 44.7 248 357-610 307-570 (615)
16 KOG2002 TPR-containing nuclear 99.9 8.5E-17 1.9E-21 162.9 45.5 577 26-613 146-800 (1018)
17 PRK11788 tetratricopeptide rep 99.8 2.4E-18 5.3E-23 174.5 28.4 287 325-618 47-354 (389)
18 PRK15174 Vi polysaccharide exp 99.8 4.7E-17 1E-21 172.8 38.6 350 224-582 17-386 (656)
19 PRK11788 tetratricopeptide rep 99.8 4.8E-18 1E-22 172.3 29.1 299 48-380 42-354 (389)
20 PRK10049 pgaA outer membrane p 99.8 3.8E-16 8.2E-21 169.7 45.3 362 215-613 52-458 (765)
21 KOG2002 TPR-containing nuclear 99.8 1.6E-15 3.4E-20 153.9 43.0 541 57-611 146-745 (1018)
22 PRK15174 Vi polysaccharide exp 99.8 1.3E-16 2.8E-21 169.5 36.7 352 253-613 15-383 (656)
23 KOG4422 Uncharacterized conser 99.8 3.3E-15 7.2E-20 137.6 38.7 444 41-542 116-587 (625)
24 TIGR00990 3a0801s09 mitochondr 99.8 2.6E-15 5.7E-20 160.3 42.7 249 293-582 309-576 (615)
25 PRK14574 hmsH outer membrane p 99.8 6.6E-15 1.4E-19 156.6 44.1 435 119-584 42-520 (822)
26 PRK14574 hmsH outer membrane p 99.8 1.3E-14 2.8E-19 154.4 43.0 436 150-613 42-515 (822)
27 PRK10049 pgaA outer membrane p 99.8 4.7E-14 1E-18 153.4 45.3 397 47-509 21-456 (765)
28 KOG4422 Uncharacterized conser 99.8 1.2E-14 2.5E-19 134.0 33.0 257 39-326 205-481 (625)
29 KOG0495 HAT repeat protein [RN 99.7 3.9E-12 8.5E-17 123.8 50.5 485 125-626 390-893 (913)
30 KOG2076 RNA polymerase III tra 99.7 8.3E-13 1.8E-17 133.6 46.5 581 21-607 150-891 (895)
31 KOG4318 Bicoid mRNA stability 99.7 4.5E-15 9.7E-20 148.8 29.7 512 2-541 17-676 (1088)
32 KOG2076 RNA polymerase III tra 99.7 1.1E-12 2.4E-17 132.7 45.9 518 90-612 153-850 (895)
33 KOG2003 TPR repeat-containing 99.7 2.9E-14 6.3E-19 132.3 28.2 270 322-597 428-709 (840)
34 KOG4318 Bicoid mRNA stability 99.7 3.9E-13 8.5E-18 135.1 36.8 524 63-622 12-604 (1088)
35 KOG0495 HAT repeat protein [RN 99.7 5.4E-11 1.2E-15 116.1 49.2 508 61-590 366-893 (913)
36 PF13429 TPR_15: Tetratricopep 99.6 1.6E-15 3.4E-20 145.3 9.1 254 351-609 15-275 (280)
37 KOG1155 Anaphase-promoting com 99.6 1.1E-11 2.4E-16 116.1 30.5 360 208-609 160-534 (559)
38 KOG1915 Cell cycle control pro 99.6 8.5E-10 1.9E-14 103.9 41.8 492 110-610 72-624 (677)
39 KOG2003 TPR repeat-containing 99.6 2.2E-11 4.8E-16 113.5 30.4 435 149-611 208-689 (840)
40 KOG0547 Translocase of outer m 99.6 2.1E-11 4.5E-16 115.0 30.3 211 393-609 340-564 (606)
41 KOG1173 Anaphase-promoting com 99.5 6.5E-11 1.4E-15 114.0 33.3 196 411-610 309-517 (611)
42 KOG1126 DNA-binding cell divis 99.5 7.5E-13 1.6E-17 129.8 20.6 275 328-612 334-621 (638)
43 KOG1915 Cell cycle control pro 99.5 1.1E-10 2.3E-15 109.8 33.4 415 224-651 85-536 (677)
44 KOG1126 DNA-binding cell divis 99.5 2.2E-12 4.8E-17 126.6 22.5 247 359-611 334-586 (638)
45 PRK10747 putative protoheme IX 99.5 1.5E-11 3.2E-16 123.4 28.9 275 326-610 97-389 (398)
46 KOG1155 Anaphase-promoting com 99.5 2.2E-10 4.7E-15 107.6 32.9 254 352-610 235-494 (559)
47 PRK10747 putative protoheme IX 99.5 1.9E-11 4.2E-16 122.5 28.4 287 256-578 97-391 (398)
48 TIGR00540 hemY_coli hemY prote 99.5 1.4E-10 3.1E-15 117.0 31.7 288 255-574 96-396 (409)
49 KOG2047 mRNA splicing factor [ 99.5 3.6E-08 7.7E-13 96.8 44.5 516 78-604 104-716 (835)
50 TIGR00540 hemY_coli hemY prote 99.4 2.6E-10 5.7E-15 115.1 29.3 279 325-610 96-398 (409)
51 COG3071 HemY Uncharacterized e 99.4 1.1E-09 2.4E-14 101.5 29.0 284 256-574 97-387 (400)
52 TIGR02521 type_IV_pilW type IV 99.4 7.7E-11 1.7E-15 110.3 22.4 197 413-610 30-231 (234)
53 KOG2047 mRNA splicing factor [ 99.4 1.5E-07 3.2E-12 92.6 43.9 531 11-571 103-717 (835)
54 PF13429 TPR_15: Tetratricopep 99.4 2.4E-12 5.3E-17 123.3 11.3 251 251-540 16-272 (280)
55 KOG4162 Predicted calmodulin-b 99.4 2.7E-08 5.9E-13 99.9 38.2 495 52-622 238-793 (799)
56 KOG0985 Vesicle coat protein c 99.3 9.6E-07 2.1E-11 91.3 47.6 462 114-608 609-1246(1666)
57 COG3071 HemY Uncharacterized e 99.3 5.8E-09 1.3E-13 96.8 28.7 284 155-472 97-388 (400)
58 COG2956 Predicted N-acetylgluc 99.3 2E-09 4.3E-14 96.6 24.2 300 256-621 48-357 (389)
59 KOG3785 Uncharacterized conser 99.3 1.7E-08 3.7E-13 91.7 29.9 134 447-585 361-497 (557)
60 PF13041 PPR_2: PPR repeat fam 99.3 5E-12 1.1E-16 84.1 5.2 50 39-88 1-50 (50)
61 KOG0985 Vesicle coat protein c 99.3 6.7E-07 1.5E-11 92.4 43.6 548 13-595 609-1326(1666)
62 KOG1174 Anaphase-promoting com 99.3 5.2E-08 1.1E-12 90.6 32.5 304 275-584 191-507 (564)
63 PF13041 PPR_2: PPR repeat fam 99.3 1.2E-11 2.7E-16 82.2 6.7 50 443-492 1-50 (50)
64 COG3063 PilF Tfp pilus assembl 99.3 5.4E-10 1.2E-14 95.6 17.0 162 447-613 37-204 (250)
65 COG2956 Predicted N-acetylgluc 99.3 1.6E-08 3.6E-13 90.9 27.0 277 291-608 48-341 (389)
66 KOG2376 Signal recognition par 99.3 1.5E-07 3.2E-12 91.8 35.3 434 151-608 21-517 (652)
67 KOG1173 Anaphase-promoting com 99.2 1.3E-07 2.8E-12 91.8 34.6 281 309-593 240-534 (611)
68 KOG1840 Kinesin light chain [C 99.2 5E-09 1.1E-13 104.5 24.6 230 380-609 200-477 (508)
69 KOG0547 Translocase of outer m 99.2 4.4E-08 9.5E-13 93.1 29.3 185 318-507 365-564 (606)
70 PRK11189 lipoprotein NlpI; Pro 99.2 2.7E-09 5.8E-14 102.3 20.6 212 393-613 40-267 (296)
71 KOG1129 TPR repeat-containing 99.2 1.9E-09 4.1E-14 96.7 16.7 229 350-613 229-460 (478)
72 KOG2376 Signal recognition par 99.2 7.4E-07 1.6E-11 87.1 35.2 429 48-502 19-513 (652)
73 PRK12370 invasion protein regu 99.1 1.9E-08 4.1E-13 105.7 24.6 243 359-611 276-535 (553)
74 PRK12370 invasion protein regu 99.1 8.7E-09 1.9E-13 108.3 21.3 211 393-611 275-502 (553)
75 TIGR02521 type_IV_pilW type IV 99.1 1.2E-08 2.6E-13 95.4 19.7 164 445-611 31-198 (234)
76 KOG3616 Selective LIM binding 99.1 2.5E-05 5.4E-10 78.4 43.7 529 22-602 744-1382(1636)
77 KOG1840 Kinesin light chain [C 99.1 7.9E-08 1.7E-12 96.1 24.7 125 451-575 331-477 (508)
78 KOG1174 Anaphase-promoting com 99.1 5.1E-06 1.1E-10 77.7 34.3 258 342-610 230-499 (564)
79 KOG1156 N-terminal acetyltrans 99.0 7.5E-06 1.6E-10 81.2 36.9 442 155-609 20-509 (700)
80 PRK11189 lipoprotein NlpI; Pro 99.0 7.1E-08 1.5E-12 92.6 23.1 232 359-596 41-285 (296)
81 KOG4162 Predicted calmodulin-b 99.0 2.8E-05 6E-10 79.0 41.1 100 307-406 317-421 (799)
82 KOG3785 Uncharacterized conser 99.0 7.5E-06 1.6E-10 75.0 32.5 444 118-613 29-492 (557)
83 PF12569 NARP1: NMDA receptor- 99.0 9.3E-06 2E-10 82.6 37.2 253 348-607 198-516 (517)
84 KOG3616 Selective LIM binding 99.0 3.8E-05 8.3E-10 77.2 40.0 28 582-609 995-1022(1636)
85 KOG1125 TPR repeat-containing 99.0 5.5E-08 1.2E-12 94.7 18.6 216 392-610 298-526 (579)
86 KOG3617 WD40 and TPR repeat-co 98.9 2.1E-05 4.6E-10 80.0 34.6 203 10-239 757-994 (1416)
87 KOG3617 WD40 and TPR repeat-co 98.9 6E-05 1.3E-09 76.9 37.7 228 20-270 738-994 (1416)
88 COG3063 PilF Tfp pilus assembl 98.9 3.6E-07 7.8E-12 78.7 19.0 190 419-610 40-235 (250)
89 PF12569 NARP1: NMDA receptor- 98.9 1.9E-06 4.1E-11 87.6 27.7 283 321-610 12-333 (517)
90 KOG1129 TPR repeat-containing 98.9 8.6E-08 1.9E-12 86.3 15.9 220 316-541 226-454 (478)
91 PF04733 Coatomer_E: Coatomer 98.9 1.4E-07 3E-12 89.1 17.0 81 530-610 181-264 (290)
92 KOG1127 TPR repeat-containing 98.9 0.00016 3.5E-09 75.6 39.5 589 12-609 494-1173(1238)
93 PF12854 PPR_1: PPR repeat 98.8 3E-09 6.4E-14 63.1 3.2 34 4-37 1-34 (34)
94 KOG0548 Molecular co-chaperone 98.8 2E-06 4.4E-11 83.4 23.9 166 420-595 304-473 (539)
95 KOG4340 Uncharacterized conser 98.8 2.9E-06 6.3E-11 75.7 22.7 415 172-610 5-442 (459)
96 PF04733 Coatomer_E: Coatomer 98.8 3.7E-07 7.9E-12 86.2 18.4 154 422-582 110-270 (290)
97 KOG0624 dsRNA-activated protei 98.8 2E-05 4.3E-10 72.0 28.2 52 559-610 318-369 (504)
98 cd05804 StaR_like StaR_like; a 98.8 9.9E-06 2.2E-10 81.1 30.0 257 352-611 51-336 (355)
99 TIGR03302 OM_YfiO outer membra 98.8 8.5E-07 1.8E-11 82.7 19.0 179 414-612 33-233 (235)
100 KOG0624 dsRNA-activated protei 98.8 2.7E-05 5.9E-10 71.1 27.1 333 248-619 43-402 (504)
101 PRK10370 formate-dependent nit 98.8 5.1E-07 1.1E-11 80.4 16.2 118 493-613 52-175 (198)
102 KOG1127 TPR repeat-containing 98.8 4E-05 8.7E-10 79.9 31.4 550 43-608 494-1101(1238)
103 KOG1156 N-terminal acetyltrans 98.7 0.00035 7.7E-09 69.8 45.1 47 564-610 641-687 (700)
104 PRK15359 type III secretion sy 98.7 1.9E-07 4.2E-12 78.5 12.6 121 466-593 14-137 (144)
105 PRK04841 transcriptional regul 98.7 0.0011 2.4E-08 75.7 46.5 160 451-610 579-759 (903)
106 KOG1128 Uncharacterized conser 98.7 3.1E-06 6.7E-11 85.1 20.9 94 517-610 520-615 (777)
107 PRK15359 type III secretion sy 98.7 4.4E-07 9.6E-12 76.3 12.9 107 501-612 14-122 (144)
108 KOG0548 Molecular co-chaperone 98.7 3.2E-05 7E-10 75.3 26.5 218 382-613 227-457 (539)
109 KOG4340 Uncharacterized conser 98.6 2.5E-05 5.4E-10 70.0 22.7 351 1-370 1-372 (459)
110 KOG1070 rRNA processing protei 98.6 5.8E-06 1.3E-10 88.8 20.9 197 412-613 1456-1665(1710)
111 PRK15179 Vi polysaccharide bio 98.6 4.7E-06 1E-10 88.1 20.5 135 444-583 85-223 (694)
112 KOG1914 mRNA cleavage and poly 98.6 0.00084 1.8E-08 65.7 36.6 174 360-534 347-528 (656)
113 PRK15363 pathogenicity island 98.6 1.3E-06 2.8E-11 71.8 12.6 119 515-656 34-154 (157)
114 PLN02789 farnesyltranstransfer 98.6 1.8E-05 4E-10 75.8 22.3 182 424-609 81-300 (320)
115 KOG1128 Uncharacterized conser 98.5 4.4E-06 9.4E-11 84.1 17.0 189 409-612 393-583 (777)
116 PF12854 PPR_1: PPR repeat 98.5 1.2E-07 2.7E-12 56.2 3.9 32 106-137 2-33 (34)
117 PRK10370 formate-dependent nit 98.5 9.5E-06 2.1E-10 72.3 17.6 154 421-586 23-182 (198)
118 cd05804 StaR_like StaR_like; a 98.5 0.00028 6.1E-09 70.6 28.4 263 346-611 8-293 (355)
119 COG5010 TadD Flp pilus assembl 98.4 3E-05 6.4E-10 68.7 17.4 156 449-607 70-227 (257)
120 PLN02789 farnesyltranstransfer 98.4 2.1E-05 4.6E-10 75.4 17.6 188 421-613 44-252 (320)
121 TIGR02552 LcrH_SycD type III s 98.4 5.3E-06 1.2E-10 69.5 11.7 100 512-611 12-114 (135)
122 PRK04841 transcriptional regul 98.4 0.0022 4.9E-08 73.1 36.1 320 189-508 386-759 (903)
123 KOG1070 rRNA processing protei 98.4 9.8E-05 2.1E-09 79.9 22.6 220 279-499 1459-1690(1710)
124 COG5010 TadD Flp pilus assembl 98.4 3.8E-05 8.1E-10 68.1 16.4 133 477-611 63-197 (257)
125 KOG1125 TPR repeat-containing 98.3 3.7E-05 8E-10 75.6 17.3 251 323-603 295-563 (579)
126 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.1E-05 2.3E-10 78.9 13.8 122 483-609 172-295 (395)
127 TIGR03302 OM_YfiO outer membra 98.3 3.5E-05 7.7E-10 71.8 16.8 181 378-579 32-234 (235)
128 KOG3060 Uncharacterized conser 98.3 0.00017 3.6E-09 63.5 19.0 167 417-586 55-229 (289)
129 PRK15179 Vi polysaccharide bio 98.3 9.8E-05 2.1E-09 78.4 21.3 141 410-555 82-229 (694)
130 COG4783 Putative Zn-dependent 98.3 0.00012 2.5E-09 70.9 18.6 139 451-611 312-454 (484)
131 KOG1914 mRNA cleavage and poly 98.2 0.0079 1.7E-07 59.2 31.7 178 295-474 310-501 (656)
132 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 4.8E-05 1E-09 74.4 15.2 127 416-546 171-298 (395)
133 KOG3081 Vesicle coat complex C 98.2 0.00057 1.2E-08 60.7 20.0 141 421-600 115-259 (299)
134 TIGR00756 PPR pentatricopeptid 98.2 3.4E-06 7.3E-11 51.1 4.5 35 446-480 1-35 (35)
135 COG4783 Putative Zn-dependent 98.2 0.00037 8.1E-09 67.5 20.0 119 489-610 315-436 (484)
136 TIGR00756 PPR pentatricopeptid 98.1 4.1E-06 8.9E-11 50.7 4.2 35 42-76 1-35 (35)
137 TIGR02552 LcrH_SycD type III s 98.1 6.4E-05 1.4E-09 63.0 12.8 113 467-584 5-121 (135)
138 PRK14720 transcript cleavage f 98.1 0.00042 9.1E-09 74.5 21.4 215 342-593 29-268 (906)
139 KOG2053 Mitochondrial inherita 98.1 0.021 4.5E-07 60.0 37.9 66 551-616 439-507 (932)
140 PF13414 TPR_11: TPR repeat; P 98.1 8.2E-06 1.8E-10 58.8 5.7 64 547-610 2-66 (69)
141 PF13812 PPR_3: Pentatricopept 98.1 5.4E-06 1.2E-10 49.7 4.0 33 42-74 2-34 (34)
142 COG3898 Uncharacterized membra 98.1 0.0075 1.6E-07 56.9 25.8 243 356-610 132-391 (531)
143 KOG2053 Mitochondrial inherita 98.1 0.022 4.9E-07 59.7 41.5 217 52-273 20-256 (932)
144 PF13812 PPR_3: Pentatricopept 98.1 8.2E-06 1.8E-10 48.9 4.5 33 446-478 2-34 (34)
145 PF09976 TPR_21: Tetratricopep 98.0 0.00022 4.7E-09 60.3 14.6 85 522-607 54-143 (145)
146 PF09976 TPR_21: Tetratricopep 98.0 0.00039 8.4E-09 58.8 15.3 124 448-575 15-145 (145)
147 KOG3081 Vesicle coat complex C 98.0 0.0015 3.2E-08 58.2 18.8 141 385-534 114-259 (299)
148 PF13432 TPR_16: Tetratricopep 98.0 2E-05 4.2E-10 55.9 6.1 59 554-612 3-61 (65)
149 KOG0553 TPR repeat-containing 98.0 6.6E-05 1.4E-09 68.0 10.5 92 455-551 91-185 (304)
150 PRK14720 transcript cleavage f 97.9 0.00056 1.2E-08 73.5 18.1 209 374-614 25-255 (906)
151 KOG3060 Uncharacterized conser 97.9 0.0012 2.7E-08 58.2 17.0 162 447-613 54-222 (289)
152 PF12895 Apc3: Anaphase-promot 97.9 1.4E-05 3E-10 60.2 4.4 59 548-607 25-83 (84)
153 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00015 3.3E-09 59.1 10.9 93 519-611 5-105 (119)
154 PLN03088 SGT1, suppressor of 97.9 0.00021 4.5E-09 70.5 13.4 102 487-591 9-113 (356)
155 KOG0553 TPR repeat-containing 97.9 9.6E-05 2.1E-09 67.0 9.8 98 488-588 89-189 (304)
156 cd00189 TPR Tetratricopeptide 97.9 0.00012 2.6E-09 56.7 9.7 92 519-610 3-96 (100)
157 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00026 5.6E-09 57.7 11.0 103 484-586 6-114 (119)
158 PF14559 TPR_19: Tetratricopep 97.8 5.7E-05 1.2E-09 54.1 6.1 52 559-610 2-53 (68)
159 COG4235 Cytochrome c biogenesi 97.8 0.00073 1.6E-08 61.8 14.2 102 513-614 152-259 (287)
160 KOG0550 Molecular chaperone (D 97.8 0.0008 1.7E-08 63.6 14.4 161 446-611 169-350 (486)
161 PLN03088 SGT1, suppressor of 97.8 0.0003 6.6E-09 69.3 12.4 103 451-558 8-113 (356)
162 PF01535 PPR: PPR repeat; Int 97.8 3.5E-05 7.6E-10 44.9 3.5 31 446-476 1-31 (31)
163 PRK10153 DNA-binding transcrip 97.7 0.0014 3.1E-08 67.5 16.9 63 548-611 420-482 (517)
164 PRK02603 photosystem I assembl 97.7 0.00037 8E-09 61.0 11.1 81 517-597 36-121 (172)
165 PRK15331 chaperone protein Sic 97.7 0.001 2.2E-08 55.3 12.6 100 511-610 31-133 (165)
166 PF07079 DUF1347: Protein of u 97.7 0.052 1.1E-06 52.6 33.2 189 415-609 299-522 (549)
167 PF01535 PPR: PPR repeat; Int 97.7 4.5E-05 9.7E-10 44.4 3.4 30 42-71 1-30 (31)
168 PF13371 TPR_9: Tetratricopept 97.7 0.00013 2.8E-09 53.2 6.5 59 555-613 2-60 (73)
169 PF13431 TPR_17: Tetratricopep 97.7 2.9E-05 6.2E-10 46.0 2.4 33 571-603 2-34 (34)
170 CHL00033 ycf3 photosystem I as 97.7 0.00039 8.5E-09 60.6 10.6 93 516-608 35-139 (168)
171 PRK02603 photosystem I assembl 97.6 0.0016 3.5E-08 56.9 13.7 128 446-597 36-166 (172)
172 PF12895 Apc3: Anaphase-promot 97.6 0.0002 4.2E-09 53.9 6.6 48 458-505 2-50 (84)
173 COG4700 Uncharacterized protei 97.6 0.0079 1.7E-07 50.5 16.1 132 476-610 85-221 (251)
174 PF04840 Vps16_C: Vps16, C-ter 97.6 0.084 1.8E-06 50.8 27.7 108 417-541 180-287 (319)
175 PF04840 Vps16_C: Vps16, C-ter 97.5 0.09 2E-06 50.6 26.2 106 316-437 180-285 (319)
176 PF05843 Suf: Suppressor of fo 97.5 0.0047 1E-07 58.7 15.9 134 446-582 2-141 (280)
177 PF13432 TPR_16: Tetratricopep 97.5 0.00023 5.1E-09 50.3 5.4 61 522-582 3-65 (65)
178 PF08579 RPM2: Mitochondrial r 97.5 0.0014 3E-08 50.1 8.9 79 45-123 29-116 (120)
179 PRK10153 DNA-binding transcrip 97.4 0.0052 1.1E-07 63.4 16.0 143 441-585 333-490 (517)
180 PF14938 SNAP: Soluble NSF att 97.4 0.019 4.1E-07 54.8 18.6 95 448-542 158-263 (282)
181 CHL00033 ycf3 photosystem I as 97.3 0.0091 2E-07 52.0 14.5 79 446-527 36-117 (168)
182 cd00189 TPR Tetratricopeptide 97.3 0.0022 4.8E-08 49.4 9.8 97 448-579 3-99 (100)
183 PF14938 SNAP: Soluble NSF att 97.3 0.017 3.8E-07 55.1 17.5 143 451-608 100-263 (282)
184 PRK15363 pathogenicity island 97.3 0.0062 1.4E-07 50.5 12.2 95 419-514 40-137 (157)
185 PF13414 TPR_11: TPR repeat; P 97.3 0.00036 7.8E-09 50.1 4.5 64 516-579 3-69 (69)
186 KOG1130 Predicted G-alpha GTPa 97.3 0.0027 5.8E-08 60.1 10.8 128 482-609 197-342 (639)
187 KOG1538 Uncharacterized conser 97.3 0.056 1.2E-06 54.6 20.2 56 419-474 778-846 (1081)
188 PF10037 MRP-S27: Mitochondria 97.3 0.0038 8.2E-08 61.7 12.4 120 273-392 61-186 (429)
189 PF08579 RPM2: Mitochondrial r 97.3 0.0034 7.4E-08 48.1 9.2 80 145-224 28-116 (120)
190 PF10037 MRP-S27: Mitochondria 97.2 0.0019 4.1E-08 63.8 9.8 94 44-137 69-164 (429)
191 PF12688 TPR_5: Tetratrico pep 97.2 0.0092 2E-07 47.7 12.0 92 450-541 6-100 (120)
192 PF13428 TPR_14: Tetratricopep 97.2 0.00049 1.1E-08 43.8 3.8 42 549-590 2-43 (44)
193 PRK10866 outer membrane biogen 97.2 0.039 8.5E-07 51.0 17.8 169 420-609 38-239 (243)
194 COG4700 Uncharacterized protei 97.2 0.013 2.8E-07 49.3 12.5 108 506-613 79-191 (251)
195 PF14559 TPR_19: Tetratricopep 97.1 0.00044 9.5E-09 49.5 3.4 57 492-551 3-61 (68)
196 KOG0543 FKBP-type peptidyl-pro 97.1 0.0039 8.5E-08 59.4 10.4 63 548-610 257-319 (397)
197 PRK10866 outer membrane biogen 97.1 0.092 2E-06 48.6 19.3 52 322-373 41-98 (243)
198 KOG1538 Uncharacterized conser 97.1 0.065 1.4E-06 54.2 18.9 264 41-373 556-846 (1081)
199 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.0023 4.9E-08 62.5 8.8 65 547-611 74-141 (453)
200 PF12688 TPR_5: Tetratrico pep 97.1 0.0096 2.1E-07 47.6 10.9 85 524-608 9-101 (120)
201 PF13281 DUF4071: Domain of un 97.1 0.08 1.7E-06 51.4 18.9 160 419-581 146-338 (374)
202 PF06239 ECSIT: Evolutionarily 97.1 0.0033 7.1E-08 54.7 8.2 99 28-126 32-153 (228)
203 PRK10803 tol-pal system protei 97.0 0.0056 1.2E-07 57.0 10.2 58 553-610 185-245 (263)
204 KOG2796 Uncharacterized conser 97.0 0.037 8.1E-07 49.4 14.3 135 449-611 181-315 (366)
205 PRK10803 tol-pal system protei 97.0 0.016 3.4E-07 54.1 12.9 93 491-583 154-252 (263)
206 PF05843 Suf: Suppressor of fo 97.0 0.01 2.2E-07 56.4 12.0 129 481-611 2-136 (280)
207 PF13371 TPR_9: Tetratricopept 96.9 0.003 6.4E-08 45.9 6.1 64 524-587 3-68 (73)
208 COG3898 Uncharacterized membra 96.9 0.27 5.9E-06 46.8 19.4 150 457-612 132-293 (531)
209 KOG2041 WD40 repeat protein [G 96.8 0.81 1.8E-05 47.2 25.8 174 73-266 689-875 (1189)
210 PF07079 DUF1347: Protein of u 96.8 0.61 1.3E-05 45.6 37.6 353 182-554 133-531 (549)
211 KOG2280 Vacuolar assembly/sort 96.8 0.9 1.9E-05 47.4 30.6 117 475-607 679-795 (829)
212 KOG2796 Uncharacterized conser 96.7 0.058 1.3E-06 48.2 13.1 137 346-484 179-323 (366)
213 KOG2041 WD40 repeat protein [G 96.7 0.98 2.1E-05 46.6 27.5 264 220-538 768-1043(1189)
214 COG4235 Cytochrome c biogenesi 96.7 0.1 2.2E-06 48.2 15.1 104 477-583 153-262 (287)
215 PF13424 TPR_12: Tetratricopep 96.6 0.0032 6.8E-08 46.5 4.3 61 550-610 7-74 (78)
216 PF06239 ECSIT: Evolutionarily 96.6 0.024 5.3E-07 49.5 9.9 96 232-327 34-152 (228)
217 PRK11906 transcriptional regul 96.5 0.049 1.1E-06 53.6 12.6 143 460-606 273-431 (458)
218 KOG1130 Predicted G-alpha GTPa 96.5 0.027 5.8E-07 53.6 10.2 152 447-598 197-371 (639)
219 PF14432 DYW_deaminase: DYW fa 96.4 0.0028 6.1E-08 50.3 3.1 42 618-671 2-43 (116)
220 KOG2280 Vacuolar assembly/sort 96.3 1.7 3.7E-05 45.5 33.6 335 172-539 427-793 (829)
221 PF13525 YfiO: Outer membrane 96.3 0.31 6.7E-06 43.8 16.2 160 423-603 14-199 (203)
222 PF13525 YfiO: Outer membrane 96.3 0.43 9.3E-06 42.9 16.8 140 448-610 8-169 (203)
223 PF03704 BTAD: Bacterial trans 96.2 0.019 4.1E-07 48.6 7.6 61 550-610 64-124 (146)
224 KOG4555 TPR repeat-containing 96.1 0.048 1E-06 43.0 8.3 89 524-612 51-145 (175)
225 KOG1941 Acetylcholine receptor 96.1 0.28 6.1E-06 46.2 14.6 121 486-606 128-270 (518)
226 PRK11906 transcriptional regul 96.1 0.27 5.9E-06 48.7 15.0 65 547-611 337-401 (458)
227 KOG0543 FKBP-type peptidyl-pro 96.1 0.067 1.5E-06 51.4 10.7 95 517-611 258-355 (397)
228 PF13424 TPR_12: Tetratricopep 96.1 0.0089 1.9E-07 44.0 4.0 29 549-577 47-75 (78)
229 PF13512 TPR_18: Tetratricopep 96.0 0.19 4.1E-06 41.1 11.7 86 525-610 19-127 (142)
230 PF09205 DUF1955: Domain of un 96.0 0.59 1.3E-05 37.3 14.1 140 456-614 13-152 (161)
231 KOG0550 Molecular chaperone (D 96.0 1.6 3.5E-05 42.2 20.6 159 377-541 166-346 (486)
232 COG3118 Thioredoxin domain-con 96.0 0.27 5.8E-06 45.3 13.5 119 489-611 143-265 (304)
233 PF12921 ATP13: Mitochondrial 95.9 0.11 2.4E-06 42.0 9.9 49 476-524 48-96 (126)
234 KOG2114 Vacuolar assembly/sort 95.8 3.2 7E-05 44.2 27.6 82 50-138 377-458 (933)
235 PF03704 BTAD: Bacterial trans 95.8 0.092 2E-06 44.4 9.7 70 448-518 65-138 (146)
236 PLN03098 LPA1 LOW PSII ACCUMUL 95.6 0.074 1.6E-06 52.4 9.1 62 516-577 75-141 (453)
237 PF00515 TPR_1: Tetratricopept 95.5 0.022 4.7E-07 33.7 3.5 32 549-580 2-33 (34)
238 COG3118 Thioredoxin domain-con 95.5 1.1 2.3E-05 41.6 15.5 175 432-608 121-299 (304)
239 PF04184 ST7: ST7 protein; In 95.5 0.32 6.8E-06 48.3 12.9 193 457-663 180-381 (539)
240 PF07719 TPR_2: Tetratricopept 95.5 0.034 7.4E-07 32.8 4.2 32 550-581 3-34 (34)
241 COG5107 RNA14 Pre-mRNA 3'-end 95.4 2.9 6.4E-05 41.0 32.7 92 29-123 28-121 (660)
242 COG4105 ComL DNA uptake lipopr 95.4 2 4.3E-05 39.1 19.3 166 425-610 45-232 (254)
243 PF12921 ATP13: Mitochondrial 95.4 0.18 4E-06 40.8 9.4 52 509-560 45-100 (126)
244 COG1729 Uncharacterized protei 95.3 0.11 2.3E-06 47.4 8.7 66 545-612 177-245 (262)
245 COG0457 NrfG FOG: TPR repeat [ 95.3 2.3 5E-05 39.1 26.0 192 415-610 60-264 (291)
246 KOG4555 TPR repeat-containing 95.1 0.062 1.3E-06 42.3 5.5 55 557-611 52-106 (175)
247 smart00299 CLH Clathrin heavy 95.1 1.6 3.4E-05 36.5 14.7 41 451-492 13-53 (140)
248 PF04184 ST7: ST7 protein; In 95.0 1.3 2.8E-05 44.3 15.3 102 482-583 261-381 (539)
249 KOG3941 Intermediate in Toll s 95.0 0.14 3.1E-06 46.4 8.2 99 28-126 52-173 (406)
250 COG1729 Uncharacterized protei 94.9 0.46 1E-05 43.4 11.5 85 455-541 151-240 (262)
251 PF02259 FAT: FAT domain; Int 94.9 2.8 6.1E-05 41.7 18.7 151 443-595 144-305 (352)
252 KOG2610 Uncharacterized conser 94.8 0.86 1.9E-05 42.7 12.9 151 427-582 116-283 (491)
253 KOG4234 TPR repeat-containing 94.8 0.11 2.4E-06 44.4 6.6 88 526-613 105-199 (271)
254 PRK15331 chaperone protein Sic 94.7 0.55 1.2E-05 39.5 10.5 11 459-469 51-61 (165)
255 PF04053 Coatomer_WDAD: Coatom 94.7 0.31 6.6E-06 49.4 10.8 54 515-574 346-399 (443)
256 smart00299 CLH Clathrin heavy 94.6 2.1 4.5E-05 35.7 14.3 27 530-559 110-136 (140)
257 KOG1585 Protein required for f 94.5 3.5 7.5E-05 37.1 16.3 89 517-606 151-251 (308)
258 PF13512 TPR_18: Tetratricopep 94.4 1.1 2.3E-05 36.9 11.3 115 452-583 17-134 (142)
259 COG4785 NlpI Lipoprotein NlpI, 94.4 2.7 5.9E-05 36.9 14.0 176 428-610 79-265 (297)
260 COG4105 ComL DNA uptake lipopr 94.3 4.2 9E-05 37.1 18.4 140 447-611 36-196 (254)
261 PF10300 DUF3808: Protein of u 94.3 2.7 5.8E-05 43.5 16.8 87 418-506 192-293 (468)
262 COG0457 NrfG FOG: TPR repeat [ 94.2 4.4 9.6E-05 37.1 25.0 194 382-580 62-268 (291)
263 PF13281 DUF4071: Domain of un 94.1 3.7 8E-05 40.3 16.1 71 318-388 146-226 (374)
264 KOG1258 mRNA processing protei 94.1 8.2 0.00018 39.7 30.8 181 413-596 296-489 (577)
265 PRK11619 lytic murein transgly 94.0 10 0.00023 40.8 31.0 74 315-390 101-174 (644)
266 PF09613 HrpB1_HrpK: Bacterial 93.9 1.9 4.1E-05 36.2 11.9 95 487-585 17-113 (160)
267 KOG4648 Uncharacterized conser 93.9 0.11 2.5E-06 48.3 5.3 110 486-602 103-215 (536)
268 PF13176 TPR_7: Tetratricopept 93.7 0.14 3.1E-06 30.6 3.9 26 584-609 1-26 (36)
269 PF04053 Coatomer_WDAD: Coatom 93.5 2 4.3E-05 43.7 13.8 132 382-543 298-429 (443)
270 KOG3941 Intermediate in Toll s 93.5 0.57 1.2E-05 42.7 8.7 97 131-227 54-173 (406)
271 KOG2610 Uncharacterized conser 93.4 0.99 2.1E-05 42.3 10.3 160 457-619 115-284 (491)
272 PF10300 DUF3808: Protein of u 93.2 2.7 5.9E-05 43.4 14.7 128 381-508 190-333 (468)
273 PF13428 TPR_14: Tetratricopep 93.2 0.18 3.9E-06 31.9 4.0 32 582-613 1-32 (44)
274 KOG2114 Vacuolar assembly/sort 93.2 14 0.00031 39.6 28.3 117 115-239 338-458 (933)
275 COG2976 Uncharacterized protei 92.9 5.8 0.00013 34.5 13.9 126 448-580 57-191 (207)
276 PF09613 HrpB1_HrpK: Bacterial 92.9 0.91 2E-05 38.0 8.6 51 560-610 22-72 (160)
277 PF13181 TPR_8: Tetratricopept 92.9 0.16 3.4E-06 29.8 3.2 31 550-580 3-33 (34)
278 TIGR02561 HrpB1_HrpK type III 92.5 1 2.2E-05 37.1 8.1 55 559-613 21-75 (153)
279 PF13176 TPR_7: Tetratricopept 92.0 0.23 5E-06 29.7 3.1 28 550-577 1-28 (36)
280 KOG4570 Uncharacterized conser 92.0 0.53 1.2E-05 43.5 6.7 101 4-106 58-165 (418)
281 PF04097 Nic96: Nup93/Nic96; 92.0 21 0.00044 38.6 26.5 49 141-190 110-158 (613)
282 KOG2066 Vacuolar assembly/sort 91.0 25 0.00053 37.7 22.3 101 84-189 364-467 (846)
283 PF13170 DUF4003: Protein of u 90.9 5.1 0.00011 38.3 12.5 90 330-421 120-224 (297)
284 KOG1585 Protein required for f 90.7 12 0.00027 33.7 13.8 50 559-608 121-176 (308)
285 PF07721 TPR_4: Tetratricopept 90.7 0.39 8.5E-06 26.1 2.9 24 583-606 2-25 (26)
286 COG4649 Uncharacterized protei 90.6 6.3 0.00014 33.4 10.9 121 455-576 68-195 (221)
287 COG3629 DnrI DNA-binding trans 90.5 1.4 2.9E-05 41.2 7.9 61 550-610 155-215 (280)
288 PF07719 TPR_2: Tetratricopept 90.2 0.46 1E-05 27.7 3.3 29 583-611 2-30 (34)
289 KOG1464 COP9 signalosome, subu 90.1 15 0.00033 33.6 18.0 236 326-566 40-321 (440)
290 PRK09687 putative lyase; Provi 90.0 18 0.00039 34.4 26.4 72 414-490 206-277 (280)
291 KOG1920 IkappaB kinase complex 89.9 39 0.00084 38.2 24.6 158 226-445 894-1057(1265)
292 PRK09687 putative lyase; Provi 89.9 18 0.00039 34.4 26.1 74 311-389 204-277 (280)
293 PF09205 DUF1955: Domain of un 89.9 9.1 0.0002 30.8 11.0 54 180-234 89-142 (161)
294 PF10602 RPN7: 26S proteasome 89.7 4.5 9.8E-05 35.3 10.3 61 447-507 38-100 (177)
295 PF00515 TPR_1: Tetratricopept 89.6 0.73 1.6E-05 26.9 3.8 31 447-479 3-33 (34)
296 PF14853 Fis1_TPR_C: Fis1 C-te 89.5 3 6.5E-05 27.5 6.8 51 584-660 3-53 (53)
297 COG3629 DnrI DNA-binding trans 89.3 3.8 8.3E-05 38.3 9.9 57 416-472 155-214 (280)
298 KOG1258 mRNA processing protei 89.3 30 0.00064 35.9 29.0 129 40-171 44-180 (577)
299 PRK12798 chemotaxis protein; R 89.2 24 0.00053 34.9 25.1 206 427-659 125-348 (421)
300 KOG1920 IkappaB kinase complex 89.1 45 0.00097 37.8 25.2 115 421-546 915-1029(1265)
301 PRK10941 hypothetical protein; 89.1 3.2 7E-05 38.8 9.4 61 551-611 184-244 (269)
302 PF10602 RPN7: 26S proteasome 89.0 2.8 6.2E-05 36.5 8.5 64 42-105 37-102 (177)
303 PF11207 DUF2989: Protein of u 88.7 2.5 5.4E-05 37.0 7.7 70 533-602 123-198 (203)
304 PF10345 Cohesin_load: Cohesin 88.5 40 0.00088 36.5 35.6 49 561-609 547-604 (608)
305 PF08631 SPO22: Meiosis protei 88.5 23 0.00051 33.7 25.1 20 556-575 254-273 (278)
306 PF13174 TPR_6: Tetratricopept 88.3 0.65 1.4E-05 26.8 2.9 26 585-610 3-28 (33)
307 KOG4570 Uncharacterized conser 87.9 5.9 0.00013 37.1 9.8 101 408-509 58-164 (418)
308 PF13431 TPR_17: Tetratricopep 87.8 0.46 9.9E-06 28.0 2.0 22 515-536 12-33 (34)
309 KOG4648 Uncharacterized conser 87.8 2.3 5E-05 40.1 7.3 52 454-507 106-158 (536)
310 KOG1586 Protein required for f 87.6 21 0.00045 32.2 16.3 52 559-610 165-223 (288)
311 COG4455 ImpE Protein of avirul 87.3 13 0.00028 33.0 11.0 126 447-583 3-140 (273)
312 PF00637 Clathrin: Region in C 87.1 0.71 1.5E-05 38.7 3.6 86 81-169 12-97 (143)
313 PF14853 Fis1_TPR_C: Fis1 C-te 87.0 2.1 4.5E-05 28.3 4.8 34 553-586 6-39 (53)
314 COG3947 Response regulator con 86.9 27 0.00058 32.6 15.9 57 553-609 284-340 (361)
315 PF13170 DUF4003: Protein of u 86.7 16 0.00035 35.0 12.6 49 361-409 79-133 (297)
316 PF13181 TPR_8: Tetratricopept 86.3 1.6 3.5E-05 25.3 3.9 28 583-610 2-29 (34)
317 KOG3364 Membrane protein invol 85.9 11 0.00023 30.6 9.0 27 554-580 77-103 (149)
318 TIGR02561 HrpB1_HrpK type III 85.8 15 0.00032 30.5 10.0 66 492-560 22-89 (153)
319 PHA02875 ankyrin repeat protei 85.6 45 0.00098 34.0 16.9 196 65-277 19-229 (413)
320 COG2976 Uncharacterized protei 85.5 24 0.00051 30.9 11.5 90 522-612 95-189 (207)
321 PF07035 Mic1: Colon cancer-as 85.4 22 0.00049 30.4 15.3 54 317-370 93-146 (167)
322 PF13374 TPR_10: Tetratricopep 85.4 1.6 3.5E-05 26.8 3.8 28 583-610 3-30 (42)
323 smart00028 TPR Tetratricopepti 85.1 1.6 3.5E-05 24.4 3.6 28 552-579 5-32 (34)
324 PF02284 COX5A: Cytochrome c o 84.8 7.3 0.00016 29.7 7.2 60 463-524 28-87 (108)
325 PF13174 TPR_6: Tetratricopept 84.7 1.5 3.2E-05 25.2 3.1 28 553-580 5-32 (33)
326 KOG1586 Protein required for f 84.7 30 0.00065 31.2 14.4 60 525-584 163-231 (288)
327 COG4649 Uncharacterized protei 84.5 24 0.00053 30.1 16.1 118 424-542 68-193 (221)
328 PF06552 TOM20_plant: Plant sp 84.4 3.2 6.8E-05 35.5 5.9 33 564-596 51-83 (186)
329 cd00923 Cyt_c_Oxidase_Va Cytoc 84.2 9 0.0002 28.9 7.4 62 461-524 23-84 (103)
330 PF14561 TPR_20: Tetratricopep 83.3 3.3 7.1E-05 31.2 5.1 42 569-610 9-50 (90)
331 PF00637 Clathrin: Region in C 83.2 1.4 3E-05 37.0 3.5 85 183-270 13-97 (143)
332 COG4455 ImpE Protein of avirul 83.0 5.1 0.00011 35.4 6.7 64 520-583 5-70 (273)
333 COG4785 NlpI Lipoprotein NlpI, 82.4 2.8 6.1E-05 36.8 5.0 91 489-582 74-167 (297)
334 cd00923 Cyt_c_Oxidase_Va Cytoc 82.4 8.4 0.00018 29.0 6.6 61 58-119 24-84 (103)
335 COG5107 RNA14 Pre-mRNA 3'-end 82.4 57 0.0012 32.6 34.3 81 73-154 39-121 (660)
336 KOG0276 Vesicle coat complex C 82.3 25 0.00054 36.4 12.0 99 224-339 649-747 (794)
337 PF13762 MNE1: Mitochondrial s 82.1 4.9 0.00011 33.2 6.1 82 43-124 41-128 (145)
338 KOG1941 Acetylcholine receptor 82.0 51 0.0011 31.9 19.8 23 584-606 333-355 (518)
339 KOG2066 Vacuolar assembly/sort 81.8 81 0.0018 34.1 25.9 38 528-568 673-710 (846)
340 KOG0890 Protein kinase of the 81.7 1.5E+02 0.0032 36.9 29.4 305 287-612 1392-1732(2382)
341 KOG2396 HAT (Half-A-TPR) repea 81.7 64 0.0014 32.8 32.8 29 547-575 529-557 (568)
342 PF02284 COX5A: Cytochrome c o 81.5 8.5 0.00018 29.3 6.5 48 541-588 38-85 (108)
343 PF13374 TPR_10: Tetratricopep 81.2 3.5 7.6E-05 25.2 4.1 28 446-473 3-30 (42)
344 PF04097 Nic96: Nup93/Nic96; 81.1 28 0.00062 37.5 13.1 18 592-609 437-454 (613)
345 PRK15180 Vi polysaccharide bio 81.0 19 0.00042 35.9 10.5 86 525-610 332-419 (831)
346 smart00386 HAT HAT (Half-A-TPR 80.3 3.1 6.7E-05 23.7 3.4 30 562-591 1-30 (33)
347 PF11207 DUF2989: Protein of u 79.9 13 0.00028 32.7 8.2 74 462-536 123-198 (203)
348 KOG1308 Hsp70-interacting prot 79.9 1.4 3.1E-05 41.6 2.5 87 529-615 127-215 (377)
349 KOG3824 Huntingtin interacting 79.9 3.8 8.2E-05 38.0 5.1 63 526-588 126-190 (472)
350 PF07035 Mic1: Colon cancer-as 79.8 38 0.00083 29.0 15.5 46 418-463 93-138 (167)
351 TIGR02508 type_III_yscG type I 79.8 25 0.00053 26.8 9.0 61 320-383 46-106 (115)
352 KOG4234 TPR repeat-containing 79.7 22 0.00047 31.2 9.1 69 523-591 141-211 (271)
353 PHA02875 ankyrin repeat protei 78.9 80 0.0017 32.2 15.4 42 200-241 184-228 (413)
354 KOG0276 Vesicle coat complex C 78.7 54 0.0012 34.1 12.9 150 426-608 598-747 (794)
355 PF08631 SPO22: Meiosis protei 78.2 64 0.0014 30.7 24.0 61 447-509 86-150 (278)
356 PF04910 Tcf25: Transcriptiona 77.3 80 0.0017 31.4 14.5 64 547-610 99-167 (360)
357 KOG1498 26S proteasome regulat 77.3 77 0.0017 31.1 14.7 131 519-652 134-279 (439)
358 PF06552 TOM20_plant: Plant sp 77.1 16 0.00034 31.5 7.6 43 564-613 96-138 (186)
359 KOG0376 Serine-threonine phosp 76.7 6 0.00013 39.5 5.9 84 526-609 14-99 (476)
360 COG2909 MalT ATP-dependent tra 76.4 1.3E+02 0.0028 33.3 22.4 184 426-613 427-649 (894)
361 PF13934 ELYS: Nuclear pore co 76.1 59 0.0013 29.7 11.8 72 486-561 114-185 (226)
362 PF12968 DUF3856: Domain of Un 76.0 37 0.00081 26.9 10.4 61 548-608 55-126 (144)
363 KOG4642 Chaperone-dependent E3 75.7 11 0.00023 34.0 6.5 82 490-574 20-104 (284)
364 COG1747 Uncharacterized N-term 75.6 1E+02 0.0022 31.6 22.6 172 413-591 65-248 (711)
365 PF02259 FAT: FAT domain; Int 75.4 88 0.0019 30.9 18.2 64 547-610 145-212 (352)
366 TIGR03504 FimV_Cterm FimV C-te 74.7 6.7 0.00015 24.7 3.7 25 586-610 3-27 (44)
367 PF13929 mRNA_stabil: mRNA sta 74.6 77 0.0017 29.9 13.6 52 210-261 200-256 (292)
368 smart00028 TPR Tetratricopepti 74.4 6.3 0.00014 21.7 3.7 28 583-610 2-29 (34)
369 KOG0545 Aryl-hydrocarbon recep 74.4 50 0.0011 30.1 10.2 53 558-610 240-292 (329)
370 TIGR02508 type_III_yscG type I 74.0 37 0.00081 25.9 9.1 59 423-484 48-106 (115)
371 PF10579 Rapsyn_N: Rapsyn N-te 73.7 7.6 0.00016 28.0 4.2 47 492-538 18-65 (80)
372 KOG3807 Predicted membrane pro 73.5 82 0.0018 30.0 11.8 21 566-586 380-400 (556)
373 PF14863 Alkyl_sulf_dimr: Alky 73.3 14 0.0003 30.7 6.3 65 532-599 57-121 (141)
374 KOG1464 COP9 signalosome, subu 73.3 77 0.0017 29.3 13.1 185 356-540 39-256 (440)
375 KOG3824 Huntingtin interacting 73.1 5.8 0.00013 36.9 4.4 56 490-548 126-183 (472)
376 PF09670 Cas_Cas02710: CRISPR- 73.0 58 0.0012 32.7 11.9 50 457-507 143-196 (379)
377 KOG4507 Uncharacterized conser 72.2 12 0.00026 38.4 6.6 101 490-593 617-721 (886)
378 PF10579 Rapsyn_N: Rapsyn N-te 72.0 9.1 0.0002 27.6 4.3 46 560-605 18-66 (80)
379 PF09986 DUF2225: Uncharacteri 70.9 34 0.00073 31.0 8.9 60 552-611 122-194 (214)
380 PF14561 TPR_20: Tetratricopep 70.8 43 0.00093 25.2 8.1 62 547-608 21-85 (90)
381 PF11768 DUF3312: Protein of u 70.6 48 0.001 34.3 10.5 24 418-441 412-435 (545)
382 PF12862 Apc5: Anaphase-promot 70.0 14 0.00031 28.0 5.5 53 558-610 8-69 (94)
383 KOG1550 Extracellular protein 69.6 1.6E+02 0.0035 31.4 20.0 146 460-611 379-538 (552)
384 KOG3364 Membrane protein invol 69.4 30 0.00065 28.2 7.0 20 522-541 77-96 (149)
385 PF10345 Cohesin_load: Cohesin 68.8 1.8E+02 0.0039 31.6 33.5 45 324-368 372-428 (608)
386 COG4976 Predicted methyltransf 68.5 12 0.00026 33.5 5.1 55 559-613 6-60 (287)
387 KOG4279 Serine/threonine prote 67.7 1.2E+02 0.0026 32.7 12.6 183 347-581 204-399 (1226)
388 KOG2063 Vacuolar assembly/sort 67.5 2E+02 0.0043 32.3 15.0 58 13-70 310-375 (877)
389 PF13762 MNE1: Mitochondrial s 66.8 51 0.0011 27.4 8.2 78 12-89 41-128 (145)
390 TIGR03504 FimV_Cterm FimV C-te 66.5 14 0.00031 23.3 3.9 24 451-474 5-28 (44)
391 PF10366 Vps39_1: Vacuolar sor 66.3 38 0.00083 26.6 7.2 55 14-69 3-67 (108)
392 PRK10941 hypothetical protein; 65.0 44 0.00096 31.4 8.6 66 521-586 186-253 (269)
393 PF07720 TPR_3: Tetratricopept 64.8 20 0.00044 21.4 4.1 29 551-579 4-34 (36)
394 KOG2396 HAT (Half-A-TPR) repea 64.7 1.7E+02 0.0038 30.0 30.6 241 362-609 300-557 (568)
395 PF04190 DUF410: Protein of un 64.5 1.3E+02 0.0028 28.3 15.5 112 123-245 2-123 (260)
396 PRK11619 lytic murein transgly 64.5 2.2E+02 0.0048 31.1 38.0 80 523-602 414-496 (644)
397 PF08311 Mad3_BUB1_I: Mad3/BUB 63.5 56 0.0012 26.5 8.0 42 566-607 81-124 (126)
398 PF00244 14-3-3: 14-3-3 protei 61.6 1.3E+02 0.0029 27.7 11.6 162 451-613 7-200 (236)
399 PF13929 mRNA_stabil: mRNA sta 60.7 1.5E+02 0.0033 28.0 14.2 61 308-368 197-262 (292)
400 PF11846 DUF3366: Domain of un 59.7 42 0.0009 29.8 7.3 35 545-579 141-175 (193)
401 PF09477 Type_III_YscG: Bacter 58.9 85 0.0018 24.4 9.1 62 318-382 45-106 (116)
402 COG4941 Predicted RNA polymera 58.4 1.1E+02 0.0024 29.4 9.7 119 461-583 272-400 (415)
403 cd08819 CARD_MDA5_2 Caspase ac 58.2 71 0.0015 23.8 6.7 39 426-465 48-86 (88)
404 PF10366 Vps39_1: Vacuolar sor 57.1 62 0.0013 25.4 6.9 28 345-372 40-67 (108)
405 KOG0292 Vesicle coat complex C 57.1 14 0.00029 40.0 4.1 48 526-576 653-700 (1202)
406 KOG0551 Hsp90 co-chaperone CNS 55.4 87 0.0019 30.1 8.5 91 518-608 83-179 (390)
407 KOG2063 Vacuolar assembly/sort 55.4 3.5E+02 0.0076 30.5 17.1 128 44-188 507-637 (877)
408 COG0735 Fur Fe2+/Zn2+ uptake r 55.0 73 0.0016 26.7 7.5 64 62-126 7-70 (145)
409 COG3947 Response regulator con 54.6 62 0.0013 30.4 7.3 55 48-103 286-340 (361)
410 KOG2422 Uncharacterized conser 54.2 2.8E+02 0.0062 29.1 12.6 51 558-608 352-404 (665)
411 KOG4077 Cytochrome c oxidase, 54.0 67 0.0015 25.8 6.4 39 541-579 77-115 (149)
412 KOG4642 Chaperone-dependent E3 53.2 14 0.00029 33.4 2.9 85 526-610 20-106 (284)
413 PF07163 Pex26: Pex26 protein; 53.1 1.5E+02 0.0032 27.9 9.3 17 570-586 266-282 (309)
414 COG4976 Predicted methyltransf 52.9 26 0.00055 31.5 4.5 55 527-581 6-62 (287)
415 KOG4077 Cytochrome c oxidase, 52.3 99 0.0021 24.9 7.0 60 463-524 67-126 (149)
416 KOG4507 Uncharacterized conser 52.1 69 0.0015 33.3 7.8 134 477-613 568-707 (886)
417 PF04910 Tcf25: Transcriptiona 51.9 2.6E+02 0.0056 27.9 16.3 53 486-541 109-164 (360)
418 KOG0991 Replication factor C, 51.8 1.9E+02 0.0041 26.4 10.5 47 434-481 228-274 (333)
419 PHA03100 ankyrin repeat protei 51.8 3E+02 0.0065 28.7 15.2 16 123-138 117-132 (480)
420 PF07163 Pex26: Pex26 protein; 50.6 1.3E+02 0.0027 28.3 8.5 87 149-235 90-181 (309)
421 COG2912 Uncharacterized conser 50.6 47 0.001 30.9 6.0 57 554-610 187-243 (269)
422 PF04190 DUF410: Protein of un 49.7 2.3E+02 0.0049 26.7 16.6 158 22-206 2-170 (260)
423 PF11848 DUF3368: Domain of un 49.2 53 0.0011 21.1 4.5 32 88-119 14-45 (48)
424 PRK13800 putative oxidoreducta 49.2 4.7E+02 0.01 30.1 26.8 159 436-608 719-878 (897)
425 KOG0686 COP9 signalosome, subu 49.2 2.9E+02 0.0062 27.6 11.2 88 417-506 153-255 (466)
426 PF07575 Nucleopor_Nup85: Nup8 48.6 1.3E+02 0.0029 32.2 10.2 90 142-235 372-461 (566)
427 KOG0686 COP9 signalosome, subu 48.3 2.5E+02 0.0055 28.0 10.5 59 12-70 152-216 (466)
428 cd08819 CARD_MDA5_2 Caspase ac 47.8 1.2E+02 0.0025 22.7 6.5 64 96-161 22-85 (88)
429 PF11846 DUF3366: Domain of un 47.6 81 0.0018 27.9 7.2 51 492-542 120-170 (193)
430 PF02184 HAT: HAT (Half-A-TPR) 47.1 46 0.001 19.3 3.4 26 563-589 2-27 (32)
431 PF11848 DUF3368: Domain of un 46.7 71 0.0015 20.6 4.8 33 153-185 13-45 (48)
432 PRK10564 maltose regulon perip 45.3 44 0.00095 31.6 5.0 40 447-486 259-298 (303)
433 PRK14015 pepN aminopeptidase N 45.1 5.2E+02 0.011 29.5 14.5 106 497-605 733-847 (875)
434 COG5159 RPN6 26S proteasome re 44.8 2.7E+02 0.006 26.2 19.8 31 251-281 11-41 (421)
435 PF09477 Type_III_YscG: Bacter 44.7 1.5E+02 0.0033 23.2 8.9 58 423-483 49-106 (116)
436 KOG1308 Hsp70-interacting prot 44.6 4.1 8.8E-05 38.7 -1.6 64 558-621 124-187 (377)
437 COG5191 Uncharacterized conser 44.2 41 0.00089 31.7 4.6 77 515-591 106-185 (435)
438 KOG0376 Serine-threonine phosp 44.1 37 0.00081 34.2 4.6 119 452-579 11-132 (476)
439 PF06957 COPI_C: Coatomer (COP 43.7 1.7E+02 0.0038 29.6 9.2 44 538-581 288-333 (422)
440 TIGR02414 pepN_proteo aminopep 43.7 5.5E+02 0.012 29.3 14.7 89 517-605 741-837 (863)
441 PF14669 Asp_Glu_race_2: Putat 42.9 2.4E+02 0.0051 24.9 12.8 97 333-439 96-206 (233)
442 PF08311 Mad3_BUB1_I: Mad3/BUB 42.0 1.9E+02 0.004 23.5 7.7 42 463-504 81-123 (126)
443 PRK10564 maltose regulon perip 41.9 50 0.0011 31.3 4.8 40 346-385 259-298 (303)
444 PF11663 Toxin_YhaV: Toxin wit 41.9 33 0.00072 27.9 3.2 32 355-388 106-137 (140)
445 KOG2581 26S proteasome regulat 41.4 3.8E+02 0.0082 26.8 13.2 123 458-581 139-280 (493)
446 PF14689 SPOB_a: Sensor_kinase 40.6 50 0.0011 22.7 3.6 25 449-473 27-51 (62)
447 KOG0890 Protein kinase of the 40.4 8.9E+02 0.019 30.9 35.1 126 216-350 1424-1552(2382)
448 PF10255 Paf67: RNA polymerase 39.8 2E+02 0.0044 29.0 8.9 56 554-609 128-191 (404)
449 PF08967 DUF1884: Domain of un 39.3 36 0.00078 24.6 2.7 25 642-666 8-32 (85)
450 PF11817 Foie-gras_1: Foie gra 39.1 97 0.0021 28.8 6.5 19 453-471 186-204 (247)
451 PF11838 ERAP1_C: ERAP1-like C 38.9 3.7E+02 0.0081 26.0 17.2 97 496-592 146-246 (324)
452 PF10516 SHNi-TPR: SHNi-TPR; 38.6 79 0.0017 19.2 3.8 28 583-610 2-29 (38)
453 PF14689 SPOB_a: Sensor_kinase 38.4 67 0.0015 22.1 4.0 25 483-507 26-50 (62)
454 KOG2908 26S proteasome regulat 38.3 2.6E+02 0.0056 27.2 8.8 86 416-501 77-178 (380)
455 COG2178 Predicted RNA-binding 36.8 2.8E+02 0.0062 24.5 8.1 52 423-474 38-98 (204)
456 PF12583 TPPII_N: Tripeptidyl 36.7 1E+02 0.0022 24.9 5.1 36 559-594 87-122 (139)
457 PF08424 NRDE-2: NRDE-2, neces 35.9 2.4E+02 0.0052 27.6 8.9 81 533-613 3-96 (321)
458 PRK13342 recombination factor 35.4 5E+02 0.011 26.5 16.8 48 346-393 229-279 (413)
459 COG5108 RPO41 Mitochondrial DN 34.1 4.4E+02 0.0094 28.3 10.3 71 419-492 33-115 (1117)
460 PRK11639 zinc uptake transcrip 33.8 1.7E+02 0.0038 25.2 6.7 61 67-128 17-77 (169)
461 cd00280 TRFH Telomeric Repeat 33.6 1.4E+02 0.0031 26.0 5.8 29 555-584 118-146 (200)
462 PF12926 MOZART2: Mitotic-spin 33.6 2E+02 0.0044 21.4 6.6 41 198-238 29-69 (88)
463 PF12796 Ank_2: Ankyrin repeat 33.5 1.5E+02 0.0032 21.8 5.8 17 120-136 32-48 (89)
464 PF15015 NYD-SP12_N: Spermatog 33.3 1E+02 0.0022 30.6 5.6 17 522-538 234-250 (569)
465 KOG4567 GTPase-activating prot 33.2 4E+02 0.0087 25.6 9.0 70 197-267 263-342 (370)
466 COG0790 FOG: TPR repeat, SEL1 33.2 4.4E+02 0.0094 25.1 18.7 46 562-610 205-265 (292)
467 COG0735 Fur Fe2+/Zn2+ uptake r 32.6 1.9E+02 0.0042 24.2 6.6 41 248-288 25-65 (145)
468 COG5108 RPO41 Mitochondrial DN 32.5 2.2E+02 0.0049 30.3 8.0 73 81-153 33-114 (1117)
469 PF00244 14-3-3: 14-3-3 protei 32.4 4.1E+02 0.0088 24.6 9.7 40 350-389 7-46 (236)
470 KOG2471 TPR repeat-containing 32.4 5.8E+02 0.013 26.4 15.2 113 555-668 213-329 (696)
471 COG2909 MalT ATP-dependent tra 32.1 7.7E+02 0.017 27.7 27.9 54 254-307 469-526 (894)
472 PRK11639 zinc uptake transcrip 32.0 1.8E+02 0.0038 25.2 6.5 45 248-292 30-74 (169)
473 KOG4279 Serine/threonine prote 31.8 7.3E+02 0.016 27.3 11.8 172 416-611 203-395 (1226)
474 PF12862 Apc5: Anaphase-promot 31.4 2.3E+02 0.005 21.4 7.5 53 456-508 9-69 (94)
475 KOG0292 Vesicle coat complex C 31.0 6.8E+02 0.015 28.1 11.3 130 423-576 652-781 (1202)
476 PF09670 Cas_Cas02710: CRISPR- 30.9 5.3E+02 0.012 25.9 10.6 56 49-105 139-198 (379)
477 PRK13800 putative oxidoreducta 30.2 9.1E+02 0.02 27.9 27.3 196 311-525 696-893 (897)
478 PF12796 Ank_2: Ankyrin repeat 30.1 1.6E+02 0.0036 21.5 5.5 14 21-34 5-18 (89)
479 PF11663 Toxin_YhaV: Toxin wit 29.7 46 0.001 27.1 2.3 33 52-86 106-138 (140)
480 cd07153 Fur_like Ferric uptake 29.6 1.2E+02 0.0026 24.0 4.8 43 48-90 7-49 (116)
481 COG5159 RPN6 26S proteasome re 29.6 4.9E+02 0.011 24.6 15.4 51 351-401 10-67 (421)
482 PLN03192 Voltage-dependent pot 29.5 6.7E+02 0.015 28.6 12.3 56 282-341 623-680 (823)
483 PF13934 ELYS: Nuclear pore co 29.3 4.5E+02 0.0097 24.1 12.5 113 427-549 91-205 (226)
484 COG4941 Predicted RNA polymera 29.1 4E+02 0.0087 25.9 8.4 117 430-549 272-399 (415)
485 KOG4814 Uncharacterized conser 28.8 5.9E+02 0.013 27.3 10.2 84 528-611 366-457 (872)
486 KOG0530 Protein farnesyltransf 28.5 5E+02 0.011 24.4 15.6 72 547-618 111-183 (318)
487 KOG4567 GTPase-activating prot 28.2 5.5E+02 0.012 24.7 9.6 44 364-407 263-306 (370)
488 PF09454 Vps23_core: Vps23 cor 28.0 1.6E+02 0.0034 20.6 4.4 49 443-492 6-54 (65)
489 PRK13342 recombination factor 28.0 6.6E+02 0.014 25.6 18.1 116 159-292 154-279 (413)
490 PRK14700 recombination factor 28.0 5.2E+02 0.011 24.9 9.1 48 347-394 126-176 (300)
491 KOG1524 WD40 repeat-containing 27.7 3.2E+02 0.0069 28.3 7.9 21 483-503 576-596 (737)
492 PF09797 NatB_MDM20: N-acetylt 27.6 1.1E+02 0.0023 30.7 5.1 43 566-608 201-243 (365)
493 smart00777 Mad3_BUB1_I Mad3/BU 27.4 3.4E+02 0.0074 22.1 6.9 40 567-606 82-123 (125)
494 PRK09462 fur ferric uptake reg 27.4 3.4E+02 0.0073 22.7 7.4 61 66-127 7-68 (148)
495 cd00280 TRFH Telomeric Repeat 27.2 3.5E+02 0.0076 23.7 7.1 18 525-542 120-137 (200)
496 PHA03100 ankyrin repeat protei 27.1 7.3E+02 0.016 25.8 15.3 112 121-238 80-199 (480)
497 KOG1550 Extracellular protein 26.7 8.1E+02 0.018 26.2 21.1 176 26-207 228-427 (552)
498 PF02847 MA3: MA3 domain; Int 26.6 1.7E+02 0.0037 23.0 5.2 22 319-340 8-29 (113)
499 cd08326 CARD_CASP9 Caspase act 26.6 2.7E+02 0.0059 20.7 6.1 63 398-464 18-80 (84)
500 PF12926 MOZART2: Mitotic-spin 26.3 2.8E+02 0.0061 20.7 7.0 41 299-339 29-69 (88)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.4e-110 Score=916.92 Aligned_cols=668 Identities=34% Similarity=0.626 Sum_probs=658.8
Q ss_pred cccCCCCCcchhhHHHHHHhcCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCcccHHH
Q 005881 2 ITSGFHPNVITYNHLLLMYVKFSRINDAQKLFDEMPERNVISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNYYTYVG 81 (672)
Q Consensus 2 ~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 81 (672)
.+.|..+++.++|+|+.+|++.|+++.|.++|++|++||+++||.+|.+|++.|++++|+++|++|...|+.||..||++
T Consensus 113 ~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ 192 (857)
T PLN03077 113 LSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPC 192 (857)
T ss_pred HHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhhccCCCCcccHHHHHHHHHhcCChHHH
Q 005881 82 AVSACASRGDARSGKEIHGRMYRSGLELNSHVSNCLINMYGKCGLLSSAQFVFDASLERNSISWVSLLSSYCQCGEHVHG 161 (672)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 161 (672)
++++|+..+++..+.+++..+.+.|+.||..++++||.+|+++|++++|.++|++|+.+|.++||++|.+|++.|++++|
T Consensus 193 ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eA 272 (857)
T PLN03077 193 VLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEG 272 (857)
T ss_pred HHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHHHhcCCCC
Q 005881 162 LKIFLLSRKSGVAISEFSCASVLGACAVLGNLKVGMQIHSLVFKCALEFDKFVAMGLINLYAKCEKLDLASRVFSNIQLP 241 (672)
Q Consensus 162 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 241 (672)
+++|.+|...|+.||..||+.+|.+|++.|+++.+.+++..+.+.|+.||..+|++|+.+|+++|++++|.++|++|..|
T Consensus 273 l~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 352 (857)
T PLN03077 273 LELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK 352 (857)
T ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCchhHHHHHHHHHHhCCCCchHHHHHHHH
Q 005881 242 DLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVKETIGGRQLHSLIIKMGFSSFTFVANTVLD 321 (672)
Q Consensus 242 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 321 (672)
|..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..++|+|++
T Consensus 353 d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHH
Q 005881 322 FYSKCELLEESLKTFDEMDEHDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQT 401 (672)
Q Consensus 322 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 401 (672)
+|+++|++++|.++|++|.++|.++||++|.+|++.|+.++|+++|++|.. ++.||..||+.++.+|++.|+++.+.++
T Consensus 433 ~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i 511 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEI 511 (857)
T ss_pred HHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHH
Confidence 999999999999999999999999999999999999999999999999986 6999999999999999999999999999
Q ss_pred HHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 005881 402 HCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDN 481 (672)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 481 (672)
+..+.+.|+.++..++|+|+++|+++|++++|.++|+.+ .+|..+||+||.+|+++|+.++|+++|++|.+.|+.||..
T Consensus 512 ~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~ 590 (857)
T PLN03077 512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV 590 (857)
T ss_pred HHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc
Confidence 999999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005881 482 TFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKTH 561 (672)
Q Consensus 482 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 561 (672)
||+.++.+|++.|++++|.++|+.|.+++++.|+..+|++|+++|+++|++++|.+++++|+++||..+|++|+.+|..+
T Consensus 591 T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~ 670 (857)
T PLN03077 591 TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIH 670 (857)
T ss_pred cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCCceeEEEeCCEEEEEEeccccCCCh
Q 005881 562 KDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKSLKKDTGCSWTELQNKMHYFSTSRFAQFQG 641 (672)
Q Consensus 562 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (672)
|+.+.|+.+.+++++++|+++..|..|+++|+..|+|++|.++++.|+++|++|+||+|||++++++|.|++||..||+.
T Consensus 671 ~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~ 750 (857)
T PLN03077 671 RHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQI 750 (857)
T ss_pred CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCccCCCCCCCCCC
Q 005881 642 IDLHEVMNQLSVHLFDGGYVPDPIYSSHFE 671 (672)
Q Consensus 642 ~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~ 671 (672)
.+||..|+.+..+|++.||+|||..++|+.
T Consensus 751 ~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~ 780 (857)
T PLN03077 751 KEINTVLEGFYEKMKASGLAGSESSSMDEI 780 (857)
T ss_pred HHHHHHHHHHHHHHHhCCcCCCcchhcccc
Confidence 999999999999999999999999988653
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.7e-86 Score=714.68 Aligned_cols=533 Identities=32% Similarity=0.568 Sum_probs=525.4
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCcHHHHHHH
Q 005881 140 RNSISWVSLLSSYCQCGEHVHGLKIFLLSRKSG-VAISEFSCASVLGACAVLGNLKVGMQIHSLVFKCALEFDKFVAMGL 218 (672)
Q Consensus 140 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 218 (672)
++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.+.+++..+.+.|+.||..+++.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 477899999999999999999999999999864 7899999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCchhHH
Q 005881 219 INLYAKCEKLDLASRVFSNIQLPDLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVKETIGGR 298 (672)
Q Consensus 219 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 298 (672)
+.+|+++|+++.|.++|++|++||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 005881 299 QLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMDEHDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPN 378 (672)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 378 (672)
+++..+.+.|+.++..++|+|+++|+++|++++|.++|++|.++|+++||++|.+|++.|++++|+++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhc
Q 005881 379 LYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQH 458 (672)
Q Consensus 379 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 458 (672)
..||+.++.+|++.|+++.|.+++..+.+.|+.|+..++++|+++|+++|++++|.++|++|.++|+.+||+||.+|+++
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHH
Q 005881 459 GLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEF 538 (672)
Q Consensus 459 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 538 (672)
|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+++++.|+..+|++|+++|+++|++++|.++
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCCc
Q 005881 539 IKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKSLKKDTG 618 (672)
Q Consensus 539 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 618 (672)
+++++.+|+..+|++++.+|..+|+.+.|+.+++++++++|++...|..|+++|++.|+|++|.++++.|+++|+++.||
T Consensus 485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g 564 (697)
T PLN03081 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPA 564 (697)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeCCEEEEEEeccccCCChHHHHHHHHHHHHHHHhCCccCCCCCCCCCCC
Q 005881 619 CSWTELQNKMHYFSTSRFAQFQGIDLHEVMNQLSVHLFDGGYVPDPIYSSHFEE 672 (672)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~ 672 (672)
+||+++++.+|.|++||..||+..++|+.|.++..+|++.||+||+.+++||++
T Consensus 565 ~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~ 618 (697)
T PLN03081 565 CTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVD 618 (697)
T ss_pred eeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhcccc
Confidence 999999999999999999999999999999999999999999999999999875
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.4e-82 Score=701.26 Aligned_cols=573 Identities=25% Similarity=0.404 Sum_probs=551.7
Q ss_pred CCcchHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHHHH
Q 005881 39 RNVISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSACASRGDARSGKEIHGRMYRSGLELNSHVSNCLI 118 (672)
Q Consensus 39 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 118 (672)
++..++|.++.+|++.|++++|+.+|+.|.+.|++|+..+|..++++|.+.+.+..+.+++..+.+.|..++..++|+|+
T Consensus 49 ~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li 128 (857)
T PLN03077 49 SSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128 (857)
T ss_pred cchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHhhccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHH
Q 005881 119 NMYGKCGLLSSAQFVFDASLERNSISWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCASVLGACAVLGNLKVGMQ 198 (672)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 198 (672)
.+|+++|+++.|.++|++|+++|+.+||++|.+|++.|++++|+++|++|...|+.||..||+.+|++|+..+++..+.+
T Consensus 129 ~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~ 208 (857)
T PLN03077 129 SMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGRE 208 (857)
T ss_pred HHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 005881 199 IHSLVFKCALEFDKFVAMGLINLYAKCEKLDLASRVFSNIQLPDLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPSE 278 (672)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 278 (672)
++..+.+.|+.||..++++|+.+|+++|+++.|.++|++|+++|..+||++|.+|++.|++++|+++|++|...|+.||.
T Consensus 209 ~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~ 288 (857)
T PLN03077 209 VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL 288 (857)
T ss_pred HHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhccCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCCCCCcccHHHHHHHHHhcC
Q 005881 279 VTFSYVLGAFADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMDEHDVVSWNALIAGHLASC 358 (672)
Q Consensus 279 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 358 (672)
.||+.++.+|++.|+.+.+.+++..+.+.|+.||..+||+|+.+|+++|++++|.++|++|..||.++||++|.+|++.|
T Consensus 289 ~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g 368 (857)
T PLN03077 289 MTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNG 368 (857)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHh
Q 005881 359 HYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFD 438 (672)
Q Consensus 359 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 438 (672)
++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..++++|+++|+++|++++|.++|+
T Consensus 369 ~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~ 448 (857)
T PLN03077 369 LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH 448 (857)
T ss_pred CHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHH
Q 005881 439 HLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDH 518 (672)
Q Consensus 439 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 518 (672)
+|.++|+++||++|.+|++.|+.++|+++|++|.. +++||..||..++.+|++.|+++.+.+++..+. +.|+.++..+
T Consensus 449 ~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~-~~g~~~~~~~ 526 (857)
T PLN03077 449 NIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL-RTGIGFDGFL 526 (857)
T ss_pred hCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH-HhCCCcccee
Confidence 99999999999999999999999999999999986 599999999999999999999999999999987 5699999999
Q ss_pred HHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc--CCCCCCchHHHHHHHHHhcC
Q 005881 519 IASVVHLFACRGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILS--TDPEDTSAHIMLSNVYAEAN 596 (672)
Q Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g 596 (672)
+++|+++|+++|++++|.++|+.+ .||..+|++++.+|.++|+.++|..+|+++.+ ..| |..+|..+...|.+.|
T Consensus 527 ~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g 603 (857)
T PLN03077 527 PNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRSG 603 (857)
T ss_pred chHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhcC
Confidence 999999999999999999999887 78899999999999999999999999998876 456 6777888888899999
Q ss_pred ChHHHHHHHHHHh-hCCCccC
Q 005881 597 MWDETAKVRKIMK-EKSLKKD 616 (672)
Q Consensus 597 ~~~~a~~~~~~~~-~~~~~~~ 616 (672)
++++|.++|+.|. +.++.++
T Consensus 604 ~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 604 MVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred hHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999888 5566554
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.6e-70 Score=587.76 Aligned_cols=528 Identities=18% Similarity=0.240 Sum_probs=477.7
Q ss_pred CCCcchhhHHHHHHhcCCChhHHHHHhccCCCCCc-----chHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCcccHHH
Q 005881 7 HPNVITYNHLLLMYVKFSRINDAQKLFDEMPERNV-----ISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNYYTYVG 81 (672)
Q Consensus 7 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 81 (672)
.++...|..++..+++.|++++|.++|++|++++. ..++.++.+|.+.|.+++|+.+|+.|.. ||..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 46677899999999999999999999999987554 4566778889999999999999999974 99999999
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhhccC----CCCcccHHHHHHHHHhcCC
Q 005881 82 AVSACASRGDARSGKEIHGRMYRSGLELNSHVSNCLINMYGKCGLLSSAQFVFDASL----ERNSISWVSLLSSYCQCGE 157 (672)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~ 157 (672)
++.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|+++|++++|.++|++|. .||..+|+.||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 999999999999999999999999999999999999999999999999999999997 4799999999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHH--hcCCCcHHHHHHHHHHhhcCCChhHHHHHH
Q 005881 158 HVHGLKIFLLSRKSGVAISEFSCASVLGACAVLGNLKVGMQIHSLVFK--CALEFDKFVAMGLINLYAKCEKLDLASRVF 235 (672)
Q Consensus 158 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 235 (672)
+++|+++|+.|...|+.||..||+.+|.+|++.|+++.|.+++++|.+ .|+.||..+|+.||.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999986 578999999999999999999999999999
Q ss_pred hcCCC----CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCchhHHHHHHHHHHhCCCC
Q 005881 236 SNIQL----PDLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVKETIGGRQLHSLIIKMGFSS 311 (672)
Q Consensus 236 ~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 311 (672)
+.|.+ |+..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99974 67799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHccCChHHHHHHHhhCC----CCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHH
Q 005881 312 FTFVANTVLDFYSKCELLEESLKTFDEMD----EHDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILN 387 (672)
Q Consensus 312 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 387 (672)
+..+|++||.+|++.|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|...|+.||..||+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999995 49999999999999999999999999999999999999999999999
Q ss_pred HHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHH
Q 005881 388 ISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEI 467 (672)
Q Consensus 388 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 467 (672)
+|++.|+++.|.+++..|.+.|+.|+..+|++++.++.+ ++++|.++.+.+.. |+. .......+..++|+.+
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~-----f~~-g~~~~~n~w~~~Al~l 834 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVS-----FDS-GRPQIENKWTSWALMV 834 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhh-----hhc-cccccccchHHHHHHH
Confidence 999999999999999999999999999999999976432 35555544333221 110 0111112234579999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhC---CC
Q 005881 468 YSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSS---PI 544 (672)
Q Consensus 468 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~ 544 (672)
|++|++.|+.||..||..++.+++..+..+.+..+++.|. ..+..|+..+|+++++++++. .++|..++++| ++
T Consensus 835 f~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi 911 (1060)
T PLN03218 835 YRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG-ISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGV 911 (1060)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc-cCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCC
Confidence 9999999999999999999988888899998888888775 446777889999999998432 47899999864 67
Q ss_pred CCCHH
Q 005881 545 EPNKV 549 (672)
Q Consensus 545 ~p~~~ 549 (672)
.|+..
T Consensus 912 ~p~~~ 916 (1060)
T PLN03218 912 VPSVS 916 (1060)
T ss_pred CCCcc
Confidence 77654
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.4e-70 Score=584.96 Aligned_cols=473 Identities=24% Similarity=0.372 Sum_probs=459.0
Q ss_pred CCcchHHHHHHHHHcCCCchhHHHHHHHhHhCC-CCCCcccHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHHH
Q 005881 39 RNVISWSALISGFSQIGMPEVALNYFRLMVCCV-LEPNYYTYVGAVSACASRGDARSGKEIHGRMYRSGLELNSHVSNCL 117 (672)
Q Consensus 39 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 117 (672)
++..+|+.+|.++.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 467799999999999999999999999998764 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHhhccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHH
Q 005881 118 INMYGKCGLLSSAQFVFDASLERNSISWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCASVLGACAVLGNLKVGM 197 (672)
Q Consensus 118 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 197 (672)
+++|+++|+++.|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.|+..||..++.+|+..|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 005881 198 QIHSLVFKCALEFDKFVAMGLINLYAKCEKLDLASRVFSNIQLPDLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPS 277 (672)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 277 (672)
+++..+.+.|+.+|..++++|+++|+++|++++|.++|+.|+++|+.+||.+|.+|++.|++++|+++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhccCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCCCCCcccHHHHHHHHHhc
Q 005881 278 EVTFSYVLGAFADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMDEHDVVSWNALIAGHLAS 357 (672)
Q Consensus 278 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 357 (672)
..||+.++.+|++.|+++.|.+++..|.+.|+.|+..++++|+++|+++|++++|.++|++|.++|+.+||+||.+|++.
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHh-cCCCCcccHHHHHHHHHHhcCCHHHHHHH
Q 005881 358 CHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVK-PGFDSNVVIGSALVDMYAKCGRLNDARKV 436 (672)
Q Consensus 358 ~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 436 (672)
|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 69999999999999999999999999999
Q ss_pred HhhCC-CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC
Q 005881 437 FDHLS-SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPN-DNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP 514 (672)
Q Consensus 437 ~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 514 (672)
++++. +|+..+|++|+.+|..+|+++.|..+++++.+ +.|+ ..+|..++..|++.|++++|.++++.|. ..|+..
T Consensus 485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~-~~g~~k 561 (697)
T PLN03081 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK-RKGLSM 561 (697)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH-HcCCcc
Confidence 99997 79999999999999999999999999999976 5665 5699999999999999999999999997 447653
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.3e-66 Score=554.86 Aligned_cols=531 Identities=16% Similarity=0.175 Sum_probs=376.9
Q ss_pred CCCCcccHHHHHHHHhcCCChhhHHHHHHHHHHhCC-CCChhHHHHHHHHHHhcCChHHHHHHhhccCCCCcccHHHHHH
Q 005881 72 LEPNYYTYVGAVSACASRGDARSGKEIHGRMYRSGL-ELNSHVSNCLINMYGKCGLLSSAQFVFDASLERNSISWVSLLS 150 (672)
Q Consensus 72 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~ 150 (672)
..++...|..++..|++.|++++|.++|++|.+.|+ .++..+++.++..|.+.|..++|.++|+.|..||..+|+.++.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 346677788888888899999999999999998885 5677788888899999999999999999998889999999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCChhH
Q 005881 151 SYCQCGEHVHGLKIFLLSRKSGVAISEFSCASVLGACAVLGNLKVGMQIHSLVFKCALEFDKFVAMGLINLYAKCEKLDL 230 (672)
Q Consensus 151 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 230 (672)
+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.+++++|.+.|+.||..+|+.||.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999999999999999999999999999999999999988888888877777777777777777777
Q ss_pred HHHHHhcCC----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHH--CCCCCChhhHHHHHHHhhccCCchhHHHHHHHH
Q 005881 231 ASRVFSNIQ----LPDLTAWSALIGGYAQLGKACEAIDLFVKMFS--SGLMPSEVTFSYVLGAFADVKETIGGRQLHSLI 304 (672)
Q Consensus 231 a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 304 (672)
|.++|+.|. .||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..||+.++.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 776666664 36666666666666666666666666666654 456666666666666666666666666666666
Q ss_pred HHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCCC----CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChH
Q 005881 305 IKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMDE----HDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLY 380 (672)
Q Consensus 305 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 380 (672)
.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 6666666666666666666666666666666666653 555666666666666666666666666666666666666
Q ss_pred HHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCchhHHHHHHHHH
Q 005881 381 TYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLS----SKNLVSWNTMLVGYA 456 (672)
Q Consensus 381 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~ 456 (672)
+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|++||.+|++.|++++|.++|++|. .||..+|+.++.+|+
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666666666666554 356666666666666
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHH
Q 005881 457 QHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAY 536 (672)
Q Consensus 457 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 536 (672)
+.|++++|.++|++|.+.|+.||..+|+.++..|. +.++++..+.+.+. .+ .+ .......+..++|.
T Consensus 766 k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~-~f--~~--------g~~~~~n~w~~~Al 832 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVV-SF--DS--------GRPQIENKWTSWAL 832 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhh-hh--hc--------cccccccchHHHHH
Confidence 66666666666666666666666666666654443 23444444433322 10 00 00011122346788
Q ss_pred HHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-cCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 005881 537 EFIKSS---PIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKIL-STDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKS 612 (672)
Q Consensus 537 ~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 612 (672)
.+|++| ++.||..+|+.++..+...+..+.+...++.+. .-.+.+..+|..+++.+.+. .++|..+++.|.+.|
T Consensus 833 ~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 833 MVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 898876 789999999999977777888888888887653 33445778888998876322 368999999999999
Q ss_pred CccCC
Q 005881 613 LKKDT 617 (672)
Q Consensus 613 ~~~~~ 617 (672)
+.+..
T Consensus 911 i~p~~ 915 (1060)
T PLN03218 911 VVPSV 915 (1060)
T ss_pred CCCCc
Confidence 97664
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.8e-34 Score=327.86 Aligned_cols=579 Identities=12% Similarity=0.005 Sum_probs=339.7
Q ss_pred HHhcCCChhHHHHHhccCCC---CCcchHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhcCCChhhH
Q 005881 19 MYVKFSRINDAQKLFDEMPE---RNVISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSACASRGDARSG 95 (672)
Q Consensus 19 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 95 (672)
.+.+.|++++|...|+++.+ .+...+..+...+.+.|++++|...++.+.... +.+...+..+...+...|++++|
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 382 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKA 382 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 34444555555555544432 123334444555555555555555555554432 23344455555555555555555
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhhccCCC---CcccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005881 96 KEIHGRMYRSGLELNSHVSNCLINMYGKCGLLSSAQFVFDASLER---NSISWVSLLSSYCQCGEHVHGLKIFLLSRKSG 172 (672)
Q Consensus 96 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 172 (672)
.+.++.+.+... .+...+..+...+...|++++|.+.|+..... +...+..++..+.+.|++++|+++++.+...
T Consensus 383 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 460 (899)
T TIGR02917 383 AEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK- 460 (899)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-
Confidence 555555554431 23444555555555555555555555544322 2233444555556666666666666665543
Q ss_pred CCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHHHhcCCC---CCcchHHHH
Q 005881 173 VAISEFSCASVLGACAVLGNLKVGMQIHSLVFKCALEFDKFVAMGLINLYAKCEKLDLASRVFSNIQL---PDLTAWSAL 249 (672)
Q Consensus 173 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l 249 (672)
..++..++..+...+...|+++.|.+.+..+.+... .+...+..+...+...|++++|.+.|+.+.. .+..++..+
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 539 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILAL 539 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 233445566666666666666666666666655432 2344455566666666666666666665542 334455666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHccCCh
Q 005881 250 IGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCELL 329 (672)
Q Consensus 250 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 329 (672)
...+.+.|+.++|...++++...+ +.+...+..+...+...|+++.|..+++.+.+.. +.+..++..+..+|.+.|++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 617 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDL 617 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 666666666666666666665543 2334445556666666666666666666665433 34455666666666666777
Q ss_pred HHHHHHHhhCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHH
Q 005881 330 EESLKTFDEMDE---HDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIV 406 (672)
Q Consensus 330 ~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 406 (672)
++|...|+.+.+ .+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|+++.|..+++.+.
T Consensus 618 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 618 NKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777666666543 234456666666666677777777766666541 2234556666666666677777777666666
Q ss_pred hcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 005881 407 KPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLS--SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFI 484 (672)
Q Consensus 407 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 484 (672)
+.. +.+...+..+...+.+.|++++|.+.|+.+. .|+..++..++..+...|++++|.+.++++.+.. +.+...+.
T Consensus 697 ~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~ 774 (899)
T TIGR02917 697 KQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRT 774 (899)
T ss_pred hhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 554 3344555666666666777777777776654 3444556666666677777777777777666642 33445666
Q ss_pred HHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005881 485 GVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHK 562 (672)
Q Consensus 485 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 562 (672)
.+...|...|+.++|...|+++.+. .+++...+..++..+...|+ .+|++++++. ...| ++..+..+...+...|
T Consensus 775 ~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 851 (899)
T TIGR02917 775 ALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKG 851 (899)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 6666666677777777777766632 12345666666777777776 6676666542 2333 3445556666666777
Q ss_pred CHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 005881 563 DLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMK 609 (672)
Q Consensus 563 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 609 (672)
++++|...++++++.+|.++.++..++.+|.+.|++++|.+++++|.
T Consensus 852 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 852 EADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777777777776664
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.8e-33 Score=317.00 Aligned_cols=518 Identities=13% Similarity=0.069 Sum_probs=300.7
Q ss_pred HHhcCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhhccCCC---CcccHHHHHHHHHhcCChHHH
Q 005881 85 ACASRGDARSGKEIHGRMYRSGLELNSHVSNCLINMYGKCGLLSSAQFVFDASLER---NSISWVSLLSSYCQCGEHVHG 161 (672)
Q Consensus 85 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a 161 (672)
.+...|+++.|...+..+.+.. +.+...+..+...+.+.|++++|...++.+... +...+..+...+.+.|++++|
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 382 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKA 382 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3444555555555555555543 223445555566666666666666666654432 344566666666666777777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhcC---------------------------------
Q 005881 162 LKIFLLSRKSGVAISEFSCASVLGACAVLGNLKVGMQIHSLVFKCAL--------------------------------- 208 (672)
Q Consensus 162 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------------------------------- 208 (672)
.+.|+++.+.. ..+...+..+...+...|+++.|...+..+.+...
T Consensus 383 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 461 (899)
T TIGR02917 383 AEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ 461 (899)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 77766665532 11233344444445555555555555555544332
Q ss_pred CCcHHHHHHHHHHhhcCCChhHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHH
Q 005881 209 EFDKFVAMGLINLYAKCEKLDLASRVFSNIQL---PDLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVL 285 (672)
Q Consensus 209 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll 285 (672)
+.+..++..+...|...|+.++|...|+++.+ .+...+..+...+...|++++|...++++...+ +.+..++..+.
T Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 540 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALA 540 (899)
T ss_pred CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 22333444444444444444444444444321 122233344444444445555555554444432 12333444444
Q ss_pred HHhhccCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCCC---CCcccHHHHHHHHHhcCChhH
Q 005881 286 GAFADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMDE---HDVVSWNALIAGHLASCHYGE 362 (672)
Q Consensus 286 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 362 (672)
..+.+.|+.+++...+..+.+.+ +.+...+..+...|.+.|++++|..+++.+.+ .+...|..+...+...|++++
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 44445555555555555554433 22333444555555555555555555555542 234455566666666666666
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 005881 363 AIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSS 442 (672)
Q Consensus 363 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 442 (672)
|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..++..+...|++++|.++++.+.+
T Consensus 620 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 697 (899)
T TIGR02917 620 AVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK 697 (899)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666666665432 1233445555555666666666666666655543 22345555666666666666666666666542
Q ss_pred ---CCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHH
Q 005881 443 ---KNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHI 519 (672)
Q Consensus 443 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 519 (672)
.+...+..+...+...|++++|.+.|+++... .|+..++..+..++.+.|++++|.+.++.+.+. .+.+...+
T Consensus 698 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~ 773 (899)
T TIGR02917 698 QHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLR 773 (899)
T ss_pred hCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 34445666666777777777777777777764 355566666777777777777777777776642 23356777
Q ss_pred HHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCC
Q 005881 520 ASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANM 597 (672)
Q Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 597 (672)
..++..|...|++++|.+.|+++ ...| ++..+..+...+...|+ .+|+..+++++++.|+++..+..++.+|...|+
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 852 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGE 852 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 77777888888888888887763 2233 56677777777777777 778888888888888888888888888888888
Q ss_pred hHHHHHHHHHHhhCCC
Q 005881 598 WDETAKVRKIMKEKSL 613 (672)
Q Consensus 598 ~~~a~~~~~~~~~~~~ 613 (672)
+++|.+.++++.+.+.
T Consensus 853 ~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 853 ADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHHHHhhCC
Confidence 8888888888876544
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=1.4e-25 Score=254.27 Aligned_cols=576 Identities=10% Similarity=0.010 Sum_probs=352.3
Q ss_pred HHHHHhcCCChhHHHHHhccCCC---CCcchHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCcccH-------------
Q 005881 16 LLLMYVKFSRINDAQKLFDEMPE---RNVISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNYYTY------------- 79 (672)
Q Consensus 16 ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~------------- 79 (672)
.++.....++.+.|.+.++++.. .|+..+..++..+.+.|+.++|.+.++++.+.. |+...+
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~ 111 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPE 111 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCc
Confidence 34455556666666666666543 245556666666666666666666666666543 333221
Q ss_pred ----HHHHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHHH-HHHHHhcCChHHHHHHhhccCCC---CcccHHHHHHH
Q 005881 80 ----VGAVSACASRGDARSGKEIHGRMYRSGLELNSHVSNCL-INMYGKCGLLSSAQFVFDASLER---NSISWVSLLSS 151 (672)
Q Consensus 80 ----~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~ 151 (672)
....+.+...|++++|.+.++.+.+... |+....... .......|+.++|++.++++... +...+..+...
T Consensus 112 ~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~l 190 (1157)
T PRK11447 112 GRQALQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALL 190 (1157)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 1222345566666666666666665432 222111111 11112346666666666665542 33445556666
Q ss_pred HHhcCChHHHHHHHHHHHhCC------------------------------------------------------CCCCh
Q 005881 152 YCQCGEHVHGLKIFLLSRKSG------------------------------------------------------VAISE 177 (672)
Q Consensus 152 ~~~~g~~~~a~~~~~~m~~~g------------------------------------------------------~~p~~ 177 (672)
+...|++++|++.++++.... ..|+.
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 666666666666666654321 01110
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHHHhcCCC--CCc---chHHHH---
Q 005881 178 FSCASVLGACAVLGNLKVGMQIHSLVFKCALEFDKFVAMGLINLYAKCEKLDLASRVFSNIQL--PDL---TAWSAL--- 249 (672)
Q Consensus 178 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~---~~~~~l--- 249 (672)
.. ...-..+...|++++|...++..++... .+...+..|...|.+.|+.++|...|++..+ |+. ..|..+
T Consensus 271 ~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 271 RA-RAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred HH-HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 00 0112233456677777777777666532 2455666667777777777777777766543 221 112111
Q ss_pred ---------HHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCchhHHHHHHHHHHhCCCCchHHHHHHH
Q 005881 250 ---------IGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVKETIGGRQLHSLIIKMGFSSFTFVANTVL 320 (672)
Q Consensus 250 ---------i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 320 (672)
...+.+.|++++|...|++..+.. +.+...+..+-..+...|++++|.+.++.+.+.. +.+...+..+.
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~ 426 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLA 426 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 234556677777777777776652 1233344455566667777777777777776654 22334445555
Q ss_pred HHHHccCChHHHHHHHhhCCCCC------------cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hHHHHHHHH
Q 005881 321 DFYSKCELLEESLKTFDEMDEHD------------VVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPN-LYTYSNILN 387 (672)
Q Consensus 321 ~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 387 (672)
..|. .++.++|...++.+.... ...+..+...+...|++++|++.|++.++. .|+ ...+..+..
T Consensus 427 ~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~ 503 (1157)
T PRK11447 427 NLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQ 503 (1157)
T ss_pred HHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 5553 345677777776654311 112334455667788888888888888765 453 445556667
Q ss_pred HHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCC----Cch---------hHHHHHHH
Q 005881 388 ISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSK----NLV---------SWNTMLVG 454 (672)
Q Consensus 388 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~---------~~~~li~~ 454 (672)
.+.+.|++++|...++.+.+... .+...+..+...+...++.++|...++.+... +.. .+..+...
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~ 582 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR 582 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH
Confidence 78888888888888888776432 23334444445566778888888888877632 111 12234566
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChH
Q 005881 455 YAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTR 533 (672)
Q Consensus 455 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 533 (672)
+...|+.++|.++++ . .+++...+..+...+.+.|++++|+..|+.+.+ ..| +...+..++.+|...|+++
T Consensus 583 l~~~G~~~eA~~~l~---~--~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~ 654 (1157)
T PRK11447 583 LRDSGKEAEAEALLR---Q--QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLA 654 (1157)
T ss_pred HHHCCCHHHHHHHHH---h--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHH
Confidence 778888888888776 2 244555667778888888899999988888873 345 5678888888888889999
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc------hHHHHHHHHHhcCChHHHHHHH
Q 005881 534 RAYEFIKSSP-IEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTS------AHIMLSNVYAEANMWDETAKVR 605 (672)
Q Consensus 534 ~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~~ 605 (672)
+|++.++... ..| +...+..+..++...|++++|.+.++++++..|+++. .+..++.++...|++++|.+.+
T Consensus 655 eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 655 AARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9988887643 344 3445666777778888999999999988887765543 4556788888889999999999
Q ss_pred HHHhh
Q 005881 606 KIMKE 610 (672)
Q Consensus 606 ~~~~~ 610 (672)
++...
T Consensus 735 ~~Al~ 739 (1157)
T PRK11447 735 KDAMV 739 (1157)
T ss_pred HHHHh
Confidence 88865
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=5e-25 Score=249.75 Aligned_cols=556 Identities=10% Similarity=-0.001 Sum_probs=411.7
Q ss_pred CcchhhHHHHHHhcCCChhHHHHHhccCCC--CCcchH-----------------HHHHHHHHcCCCchhHHHHHHHhHh
Q 005881 9 NVITYNHLLLMYVKFSRINDAQKLFDEMPE--RNVISW-----------------SALISGFSQIGMPEVALNYFRLMVC 69 (672)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~-----------------~~li~~~~~~g~~~~a~~~~~~m~~ 69 (672)
|+.++..+...+.+.|+.++|.+.+++..+ |+...+ ..+.+.+...|++++|++.|+.+.+
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~ 140 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFN 140 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHcc
Confidence 466778888899999999999999999876 433222 2234468889999999999999987
Q ss_pred CCCCCCcc-cHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhhccCCCCc------
Q 005881 70 CVLEPNYY-TYVGAVSACASRGDARSGKEIHGRMYRSGLELNSHVSNCLINMYGKCGLLSSAQFVFDASLERNS------ 142 (672)
Q Consensus 70 ~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~------ 142 (672)
.+ +|+.. ............|+.++|.+.++.+.+..+ .+...+..+...+...|+.++|...|+++.....
T Consensus 141 ~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P-~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa 218 (1157)
T PRK11447 141 GA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP-GNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAA 218 (1157)
T ss_pred CC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHH
Confidence 53 34432 111122223356899999999999999863 3677888899999999999999998886532100
Q ss_pred -----------------ccHH----------------------------------HHHHHHHhcCChHHHHHHHHHHHhC
Q 005881 143 -----------------ISWV----------------------------------SLLSSYCQCGEHVHGLKIFLLSRKS 171 (672)
Q Consensus 143 -----------------~~~~----------------------------------~li~~~~~~g~~~~a~~~~~~m~~~ 171 (672)
..+. .....+...|++++|+..|++..+.
T Consensus 219 ~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~ 298 (1157)
T PRK11447 219 QLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA 298 (1157)
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 0000 1123456789999999999999875
Q ss_pred CCCC-ChhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCc-HHHH------------HHHHHHhhcCCChhHHHHHHhc
Q 005881 172 GVAI-SEFSCASVLGACAVLGNLKVGMQIHSLVFKCALEFD-KFVA------------MGLINLYAKCEKLDLASRVFSN 237 (672)
Q Consensus 172 g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~------------~~li~~~~~~g~~~~a~~~~~~ 237 (672)
.| +...+..+-..+.+.|++++|...++..++...... ...+ ..+...+.+.|++++|...|++
T Consensus 299 --~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 376 (1157)
T PRK11447 299 --NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQ 376 (1157)
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44 567788888889999999999999999988754322 1112 1224567789999999999998
Q ss_pred CCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHhhccCCchhHHHHHHHHHHhCCC---
Q 005881 238 IQL---PDLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPS-EVTFSYVLGAFADVKETIGGRQLHSLIIKMGFS--- 310 (672)
Q Consensus 238 ~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--- 310 (672)
... .+...+..+...+...|++++|++.|++..+.. |+ ...+..+...+ ..++.++|..+++.+......
T Consensus 377 Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~-~~~~~~~A~~~l~~l~~~~~~~~~ 453 (1157)
T PRK11447 377 ARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLY-RQQSPEKALAFIASLSASQRRSID 453 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH-HhcCHHHHHHHHHhCCHHHHHHHH
Confidence 864 344567778899999999999999999998753 44 33444455555 446788898888765432110
Q ss_pred -----CchHHHHHHHHHHHccCChHHHHHHHhhCCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hHH
Q 005881 311 -----SFTFVANTVLDFYSKCELLEESLKTFDEMDE--H-DVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPN-LYT 381 (672)
Q Consensus 311 -----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~t 381 (672)
.....+..+...+...|++++|...|++..+ | +...+..+...|.+.|++++|...++++.+. .|+ ...
T Consensus 454 ~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~ 531 (1157)
T PRK11447 454 DIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQ 531 (1157)
T ss_pred HHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHH
Confidence 1122345567788899999999999999865 3 4456777888999999999999999999865 443 333
Q ss_pred HHHHHHHHcCcCchHHHHHHHHHHHhcCCCCccc---------HHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHH
Q 005881 382 YSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVV---------IGSALVDMYAKCGRLNDARKVFDHLSSKNLVSWNTML 452 (672)
Q Consensus 382 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 452 (672)
+..+...+...++.++|...++.+......+... .+..+...+...|+.++|.++++. ...+...+..+.
T Consensus 532 ~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-~p~~~~~~~~La 610 (1157)
T PRK11447 532 VYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-QPPSTRIDLTLA 610 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-CCCCchHHHHHH
Confidence 3333445677899999999988865433222211 122456678889999999999984 344556778889
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccC
Q 005881 453 VGYAQHGLGREALEIYSMMQENKIKPN-DNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRG 530 (672)
Q Consensus 453 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 530 (672)
..+.+.|++++|++.|++..+. .|+ ...+..+...+...|++++|...++.+. ...| +...+..+..++...|
T Consensus 611 ~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll---~~~p~~~~~~~~la~~~~~~g 685 (1157)
T PRK11447 611 DWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLP---ATANDSLNTQRRVALAWAALG 685 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh---ccCCCChHHHHHHHHHHHhCC
Confidence 9999999999999999999995 454 5688899999999999999999999876 3455 4567778899999999
Q ss_pred ChHHHHHHHHhCC-CC---C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 005881 531 QTRRAYEFIKSSP-IE---P----NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDP 579 (672)
Q Consensus 531 ~~~~A~~~~~~~~-~~---p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 579 (672)
++++|.++++++- .. | +...+..+...+...|+.++|+..|++++....
T Consensus 686 ~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~ 742 (1157)
T PRK11447 686 DTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASG 742 (1157)
T ss_pred CHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Confidence 9999999998742 22 2 224556667788999999999999999987553
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=5.1e-23 Score=222.28 Aligned_cols=559 Identities=10% Similarity=0.008 Sum_probs=351.0
Q ss_pred cCCChhHHHHHhccCCC--C-CcchHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhcCCChhhHHHH
Q 005881 22 KFSRINDAQKLFDEMPE--R-NVISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSACASRGDARSGKEI 98 (672)
Q Consensus 22 ~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 98 (672)
..|++++|+..|+...+ | +..++..+.+.|...|++++|+..+++..+. .|+...|..++..+ +++++|..+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHH
Confidence 44999999999999876 3 4667889999999999999999999999885 45555555544333 889999999
Q ss_pred HHHHHHhCCCCChhHHHHHHHH--------HHhcCChHHHHHHhhccCCCC--cccHHH-HHHHHHhcCChHHHHHHHHH
Q 005881 99 HGRMYRSGLELNSHVSNCLINM--------YGKCGLLSSAQFVFDASLERN--SISWVS-LLSSYCQCGEHVHGLKIFLL 167 (672)
Q Consensus 99 ~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~a~~~~~~~~~~~--~~~~~~-li~~~~~~g~~~~a~~~~~~ 167 (672)
++++.+..+ -+..++..+... |.+.+...++++ .+...++ ..+... +...|.+.|++++|++++.+
T Consensus 131 ye~l~~~~P-~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 131 VEELLAQQK-ACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHHhCC-CChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 999999863 356666666665 777777777776 3333343 333344 48899999999999999999
Q ss_pred HHhCCCCCChhhHHHHHHHHhc-cCChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHHHhcCCC-----C
Q 005881 168 SRKSGVAISEFSCASVLGACAV-LGNLKVGMQIHSLVFKCALEFDKFVAMGLINLYAKCEKLDLASRVFSNIQL-----P 241 (672)
Q Consensus 168 m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~ 241 (672)
+.+.+... ..-...+-.++.. .++ +.+..+++. .+..++.+...+...|.+.|+.++|.+++++++. |
T Consensus 208 L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~ 281 (987)
T PRK09782 208 ARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDA 281 (987)
T ss_pred HHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCC
Confidence 99986433 3334444445555 355 666666442 3446888999999999999999999999998862 2
Q ss_pred CcchHH------------------------------HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhh-----------
Q 005881 242 DLTAWS------------------------------ALIGGYAQLGKACEAIDLFVKMFSSGLMPSEVT----------- 280 (672)
Q Consensus 242 ~~~~~~------------------------------~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t----------- 280 (672)
...+|- .++..+.+.++++-+.++.. ..|....
T Consensus 282 ~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~~ 355 (987)
T PRK09782 282 QEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEMLEERYAVSVAT 355 (987)
T ss_pred ccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHHHHHHhhcccc
Confidence 222211 11344455555554444321 1222211
Q ss_pred -----------------------HHHHHHHhhccCCchhHHHHHHHHHHh-C-CCCchHHHHHHHHHHHccCC---hHHH
Q 005881 281 -----------------------FSYVLGAFADVKETIGGRQLHSLIIKM-G-FSSFTFVANTVLDFYSKCEL---LEES 332 (672)
Q Consensus 281 -----------------------~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~~~---~~~a 332 (672)
...+--.....|+.++|.+++...... + ...+....+-|+..|.+.+. ..++
T Consensus 356 ~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 435 (987)
T PRK09782 356 RNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKV 435 (987)
T ss_pred CchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHH
Confidence 111111223445566666666655542 1 12234444566666666655 2222
Q ss_pred HHHHh-------------------------hCCC---C--CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHH
Q 005881 333 LKTFD-------------------------EMDE---H--DVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTY 382 (672)
Q Consensus 333 ~~~~~-------------------------~~~~---~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~ 382 (672)
..+-. .... + +...|..+..++.. +++++|+..+.+.... .|+....
T Consensus 436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~ 512 (987)
T PRK09782 436 AILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQH 512 (987)
T ss_pred HHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHH
Confidence 22211 0000 1 33445555555554 6666777766666554 4554443
Q ss_pred HHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHH---HHHHHhcC
Q 005881 383 SNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSKNLVSWNTM---LVGYAQHG 459 (672)
Q Consensus 383 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g 459 (672)
..+...+...|++++|...++.+... +|+...+..+...+.+.|++++|.+.++...+.++...+.. .......|
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~G 590 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPG 590 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC
Confidence 33344445677777777777765443 23333344555666677777777777776654333222222 22233447
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHH
Q 005881 460 LGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEF 538 (672)
Q Consensus 460 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 538 (672)
++++|+..+++..+ +.|+...+..+..++.+.|++++|...+++.. ...| +...+..+..++...|+.++|++.
T Consensus 591 r~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL---~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 591 QPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAAL---ELEPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 77777777777776 35666666777777777777777777777666 3345 456666777777777777777777
Q ss_pred HHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 539 IKS-SPIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 539 ~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
+++ +...| +...+..+..++...|++++|+..++++++++|++.......+++..+..+++.|.+.+++...
T Consensus 666 l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 666 LERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 764 33445 4456666777777777777777777777777777777777777777777777777776665543
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=8.5e-22 Score=212.93 Aligned_cols=550 Identities=10% Similarity=-0.023 Sum_probs=382.7
Q ss_pred HHHHHHHH--HcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 005881 44 WSALISGF--SQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSACASRGDARSGKEIHGRMYRSGLELNSHVSNCLINMY 121 (672)
Q Consensus 44 ~~~li~~~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 121 (672)
+-.+..+. ...|++++|+..|++..+.. |-+..++..+...+...|+.++|....++..+... -|...+..+ ..+
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~L-a~i 121 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSL-AAI 121 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHH-HHh
Confidence 34444444 33499999999999998864 33466788899999999999999999999998853 344444444 222
Q ss_pred HhcCChHHHHHHhhccCCC---CcccHHHHHHH--------HHhcCChHHHHHHHHHHHhCCCCCChhhHHHH-HHHHhc
Q 005881 122 GKCGLLSSAQFVFDASLER---NSISWVSLLSS--------YCQCGEHVHGLKIFLLSRKSGVAISEFSCASV-LGACAV 189 (672)
Q Consensus 122 ~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~--------~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l-l~~~~~ 189 (672)
++.++|..+++++... +...+..+... |.+. ++|.+.++ .......|+....... .+.+..
T Consensus 122 ---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~ 194 (987)
T PRK09782 122 ---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIY 194 (987)
T ss_pred ---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHH
Confidence 8899999999987653 34455555444 5555 55555555 4443445556655555 888999
Q ss_pred cCChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhc-CCChhHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 005881 190 LGNLKVGMQIHSLVFKCALEFDKFVAMGLINLYAK-CEKLDLASRVFSNIQLPDLTAWSALIGGYAQLGKACEAIDLFVK 268 (672)
Q Consensus 190 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 268 (672)
.++++.+..++..+.+.+.. +......|..+|.. .++ +.+..+++...+.+...+..+...|.+.|+.++|..++++
T Consensus 195 l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~ 272 (987)
T PRK09782 195 LKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIE 272 (987)
T ss_pred HhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 99999999999999998754 35556667778887 466 8888887765567888899999999999999999999999
Q ss_pred HHHCCCC-CChhhHHHHH------------------------------HHhhccCCchhHHHHHHHH--------HHhCC
Q 005881 269 MFSSGLM-PSEVTFSYVL------------------------------GAFADVKETIGGRQLHSLI--------IKMGF 309 (672)
Q Consensus 269 m~~~~~~-p~~~t~~~ll------------------------------~~~~~~~~~~~a~~~~~~~--------~~~~~ 309 (672)
+...-.. |...++..++ ..+.+.++++.++++...- .-.+.
T Consensus 273 ~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 352 (987)
T PRK09782 273 NKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVS 352 (987)
T ss_pred CcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhc
Confidence 8654222 3333332222 2223333333333321100 00000
Q ss_pred --------------------CCchHHHHHHHHHHHccCChHHHHHHHhhCCC--CC----cccHHHHHHHHHhcCC---h
Q 005881 310 --------------------SSFTFVANTVLDFYSKCELLEESLKTFDEMDE--HD----VVSWNALIAGHLASCH---Y 360 (672)
Q Consensus 310 --------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~li~~~~~~~~---~ 360 (672)
+-+....-.+.-...+.|+.++|..+|+..-. ++ ....+-++..|.+.+. .
T Consensus 353 ~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 432 (987)
T PRK09782 353 VATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATP 432 (987)
T ss_pred cccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccch
Confidence 11222222222334456778888888887654 11 1233355666666655 3
Q ss_pred hHHHHH----------------------HHHHHhC-CCCCC---hHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcc
Q 005881 361 GEAIEL----------------------LKDMLFE-GHCPN---LYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNV 414 (672)
Q Consensus 361 ~~A~~~----------------------~~~m~~~-g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 414 (672)
.++..+ ....... +..|+ ...+..+-.++.. ++.++|...+....... |+.
T Consensus 433 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~ 509 (987)
T PRK09782 433 AKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDA 509 (987)
T ss_pred HHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--Cch
Confidence 333333 1111111 22233 3444445444544 78888888777776654 443
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhh
Q 005881 415 VIGSALVDMYAKCGRLNDARKVFDHLSS--KNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDN-TFIGVLSACV 491 (672)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~ 491 (672)
.....+...+...|++++|...|+++.. ++...+..+...+.+.|++++|...|++.++.. |+.. .+..+...+.
T Consensus 510 ~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~ 587 (987)
T PRK09782 510 WQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHH
Confidence 3333344555689999999999998763 455567777888999999999999999999853 5443 3444445556
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHh-CCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 005881 492 HIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKS-SPIEPN-KVVWRCLLSGCKTHKDLVLGRY 569 (672)
Q Consensus 492 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~-~~~~~~l~~~~~~~g~~~~a~~ 569 (672)
..|++++|...+++.. ...|+...+..+..++.+.|+.++|.+.+++ +...|+ ...+..+...+...|+.++|+.
T Consensus 588 ~~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 588 IPGQPELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred hCCCHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 7799999999999888 4567888999999999999999999999986 456674 5567777778999999999999
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 005881 570 AAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKSL 613 (672)
Q Consensus 570 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 613 (672)
.++++++++|+++.++..++.+|...|++++|...+++..+..+
T Consensus 665 ~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 665 MLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999876443
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=4.6e-20 Score=176.72 Aligned_cols=443 Identities=13% Similarity=0.081 Sum_probs=331.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH-HHhccCChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhc
Q 005881 146 VSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCASVLG-ACAVLGNLKVGMQIHSLVFKCALEFDKFVAMGLINLYAK 224 (672)
Q Consensus 146 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 224 (672)
..|..-..+.|++++|++.-...-... |+..--..++. .+....+.+...+--....+. .+.-..+|+.+.+.+-.
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHH
Confidence 334445556677777766544433321 11111111222 222333333322222222221 12235577778888888
Q ss_pred CCChhHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHH-HhhccCCchhHHHH
Q 005881 225 CEKLDLASRVFSNIQL---PDLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVLG-AFADVKETIGGRQL 300 (672)
Q Consensus 225 ~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~-~~~~~~~~~~a~~~ 300 (672)
.|++++|...++.+.+ ..+..|..+..++...|+.+.|.+.|.+..+. .|+.....+-+. ..-..|.+++|...
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 8888888888887764 34567888888888899999999888887764 465554433332 23346778888888
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 005881 301 HSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMDEHDV---VSWNALIAGHLASCHYGEAIELLKDMLFEGHCP 377 (672)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 377 (672)
+.+.++.. +.-..+|+.|...+...|++..|+.-|++...-|+ ..|-.|...|...+.+++|+..+.+.... .|
T Consensus 207 YlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rp 283 (966)
T KOG4626|consen 207 YLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RP 283 (966)
T ss_pred HHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CC
Confidence 77777654 23345677788888889999999999998876443 36777888889999999999998888754 66
Q ss_pred C-hHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCchhHHHHHH
Q 005881 378 N-LYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSS---KNLVSWNTMLV 453 (672)
Q Consensus 378 ~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 453 (672)
+ ...+..+-..|...|.++.|...+++.++... .-+..|+.|.+++-..|++.+|.+.+..... ....+.+.|..
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 4 34566666677889999999999999887642 2456789999999999999999999998873 34457888999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCch-HHHHHHHHHhhccCC
Q 005881 454 GYAQHGLGREALEIYSMMQENKIKPND-NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRM-DHIASVVHLFACRGQ 531 (672)
Q Consensus 454 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~ 531 (672)
.|...|.+++|..+|....+ +.|.- ..++.|...|-..|++++|+..+++.. .+.|+. +.|+.+...|...|+
T Consensus 363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhh
Confidence 99999999999999999998 67776 479999999999999999999999887 788975 889999999999999
Q ss_pred hHHHHHHHHh-CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHH
Q 005881 532 TRRAYEFIKS-SPIEPN-KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETA 602 (672)
Q Consensus 532 ~~~A~~~~~~-~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 602 (672)
...|.+.+.+ +.+.|. ....+.|...+...|++.+|++.|+.++++.|+.+.+|..++.++.-..+|.+--
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d 510 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYD 510 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchH
Confidence 9999999875 567775 4478889999999999999999999999999999999999999987777776633
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=4e-19 Score=170.38 Aligned_cols=419 Identities=15% Similarity=0.127 Sum_probs=327.5
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHHHhcCCC---CCcchHHHHHHHHHhcCC
Q 005881 182 SVLGACAVLGNLKVGMQIHSLVFKCALEFDKFVAMGLINLYAKCEKLDLASRVFSNIQL---PDLTAWSALIGGYAQLGK 258 (672)
Q Consensus 182 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~ 258 (672)
.+.+...+.|++.+|++--..+-+.... +....-.+-..+....+.+.....-....+ .-..+|..+...+-..|+
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 3444455678888887765554433211 111122222345555555544332222222 234578889999999999
Q ss_pred hhHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccCCchhHHHHHHHHHHhCCCCchHH-HHHHHHHHHccCChHHHHHHH
Q 005881 259 ACEAIDLFVKMFSSGLMP-SEVTFSYVLGAFADVKETIGGRQLHSLIIKMGFSSFTFV-ANTVLDFYSKCELLEESLKTF 336 (672)
Q Consensus 259 ~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~ 336 (672)
.++|+.+++.+.+. +| ....|..+-.++...|+.+.|.+.+.+.++.+ |+... .+.+-......|++.+|...+
T Consensus 132 ~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 132 LQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred HHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHH
Confidence 99999999999885 45 35568888889999999999999999888754 43332 233445566689999999888
Q ss_pred hhCCC--CC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCC
Q 005881 337 DEMDE--HD-VVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPN-LYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDS 412 (672)
Q Consensus 337 ~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 412 (672)
.+..+ |. .+.|+.|...+-.+|+...|+..|++..+. .|+ ...|..+-+.+...+.++.|...+....... +.
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn 284 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PN 284 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Cc
Confidence 77655 33 468999999999999999999999999865 554 3467777778888888888888777766543 22
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-chhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 005881 413 NVVIGSALVDMYAKCGRLNDARKVFDHLSS--KN-LVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPND-NTFIGVLS 488 (672)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~ 488 (672)
....+..+.-.|-..|.+|-|+..+++..+ |+ +..|+.|..++...|++.+|.+.|.+.+. +.|+. ...+.|..
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgn 362 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGN 362 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHH
Confidence 345566677778899999999999999874 44 35899999999999999999999999998 56776 47889999
Q ss_pred HhhccCcHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHhhccCChHHHHHHHHh-CCCCCCH-HHHHHHHHHHHhcCCHH
Q 005881 489 ACVHIGLVEEGWHYFNSMIRDHGISPR-MDHIASVVHLFACRGQTRRAYEFIKS-SPIEPNK-VVWRCLLSGCKTHKDLV 565 (672)
Q Consensus 489 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~-~~~~~l~~~~~~~g~~~ 565 (672)
.+...|..++|..+|.... .+.|. ....+.|...|..+|++++|+..+++ +.++|.. .+++.+...|...|+.+
T Consensus 363 i~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence 9999999999999999776 66776 47789999999999999999999986 5788964 48899999999999999
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 005881 566 LGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKSL 613 (672)
Q Consensus 566 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 613 (672)
.|.+.+.+++..+|.-++++..|+.+|...|+..+|++-++...+-.+
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999998876443
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=2.2e-17 Score=176.25 Aligned_cols=248 Identities=15% Similarity=0.024 Sum_probs=196.7
Q ss_pred cCChhHHHHHHHHHHhCC-CCCC-hHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHH
Q 005881 357 SCHYGEAIELLKDMLFEG-HCPN-LYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDAR 434 (672)
Q Consensus 357 ~~~~~~A~~~~~~m~~~g-~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 434 (672)
.+++++|++.|++....+ ..|+ ...+..+...+...|++++|...++..++... .....+..+...+...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHH
Confidence 467888888888888764 2343 34555666667788888888888888876532 23456677888888999999999
Q ss_pred HHHhhCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhh
Q 005881 435 KVFDHLS---SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPN-DNTFIGVLSACVHIGLVEEGWHYFNSMIRDH 510 (672)
Q Consensus 435 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 510 (672)
..|+.+. ..+...|..+...+...|++++|+..|++.++. .|+ ...+..+...+.+.|++++|+..|+....
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-- 461 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK-- 461 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 9998876 345678888999999999999999999999984 555 45677888889999999999999998874
Q ss_pred CCCC-chHHHHHHHHHhhccCChHHHHHHHHh-CCCCCCH-------H-HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 005881 511 GISP-RMDHIASVVHLFACRGQTRRAYEFIKS-SPIEPNK-------V-VWRCLLSGCKTHKDLVLGRYAAEKILSTDPE 580 (672)
Q Consensus 511 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~-------~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 580 (672)
..| +...+..++.++...|++++|.+.|++ +.+.|+. . .++.....+...|++++|...++++++++|+
T Consensus 462 -~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 462 -NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred -hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 345 578899999999999999999999986 3444431 1 1122222344579999999999999999999
Q ss_pred CCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 581 DTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 581 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
+..++..++.+|.+.|++++|.+.+++..+
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999999999999999999998865
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.86 E-value=8.5e-17 Score=162.92 Aligned_cols=577 Identities=15% Similarity=0.073 Sum_probs=403.3
Q ss_pred hhHHHHHhccCCCCCcch-HHHHHHHH--HcCCCchhHHHHHHHhHhCC--CCCCcccHHHHHHHHhcCCChhhHHHHHH
Q 005881 26 INDAQKLFDEMPERNVIS-WSALISGF--SQIGMPEVALNYFRLMVCCV--LEPNYYTYVGAVSACASRGDARSGKEIHG 100 (672)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~-~~~li~~~--~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 100 (672)
.+.|...|....+.++.. .-.+.+++ ...|++..|+.+|....... .+||.. ..+..++.+.++.+.|...|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHH
Confidence 578888888776522221 11233444 44689999999999976533 344443 234456678899999999999
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhc---CChHHHHHHhhccC---CCCcccHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 005881 101 RMYRSGLELNSHVSNCLINMYGKC---GLLSSAQFVFDASL---ERNSISWVSLLSSYCQCGEHVHGLKIFLLSRKSGVA 174 (672)
Q Consensus 101 ~~~~~g~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 174 (672)
...+..+ -++.++-.|-..-... ..+..+..++...- ..|++..+.|...|.-.|+++.++.+...+......
T Consensus 224 ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 9887643 1222332222222222 33445555555432 248889999999999999999999999998875321
Q ss_pred --CChhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHHHhcCCC--CC-cchHHHH
Q 005881 175 --ISEFSCASVLGACAVLGNLKVGMQIHSLVFKCALEFDKFVAMGLINLYAKCEKLDLASRVFSNIQL--PD-LTAWSAL 249 (672)
Q Consensus 175 --p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l 249 (672)
.-...|-.+-+++-..|++++|...|-+..+.........+-.|..+|.+.|+++.+...|+.+.+ || ..+...+
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 223467888899999999999999998887765443345566788999999999999999999874 33 3445555
Q ss_pred HHHHHhcC----ChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCchhHHHHHHHH----HHhCCCCchHHHHHHHH
Q 005881 250 IGGYAQLG----KACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVKETIGGRQLHSLI----IKMGFSSFTFVANTVLD 321 (672)
Q Consensus 250 i~~~~~~~----~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~li~ 321 (672)
...|...+ ..+.|..++.+....- +.|...|..+-..+. .++......++..+ ...+-.+.+.+.|.+..
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvas 460 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPEVLNNVAS 460 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 56666554 4566666666665542 334445544444443 44444445555544 45566788899999999
Q ss_pred HHHccCChHHHHHHHhhCCC-------CCcc------cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHH-HHHHHH
Q 005881 322 FYSKCELLEESLKTFDEMDE-------HDVV------SWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYT-YSNILN 387 (672)
Q Consensus 322 ~~~~~~~~~~a~~~~~~~~~-------~~~~------~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~ 387 (672)
.+...|++.+|...|++... +|.. +--.+...+-..++++.|.+.|....+. .|.-.+ |..+..
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGC 538 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhH
Confidence 99999999999999987653 2321 1122444555677899999999999876 565443 333332
Q ss_pred HHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCchhHHHHHHHHHh-----
Q 005881 388 ISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLS-----SKNLVSWNTMLVGYAQ----- 457 (672)
Q Consensus 388 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~----- 457 (672)
.....+...+|...+....... ..++..++.+.+.+.+...+..|.+-|..+. .+|+.+.-+|...|.+
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 3334567778888888777643 3355566677778888888888888555544 3455555455554432
Q ss_pred -------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccC
Q 005881 458 -------HGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRG 530 (672)
Q Consensus 458 -------~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 530 (672)
.+..++|+++|.+.+... +-|...-+.+.-.++..|++.+|..+|....+.. .-..++|..++++|..+|
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~ 694 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQG 694 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHH
Confidence 245678999999988853 4555677778888899999999999999987543 235578899999999999
Q ss_pred ChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhc-----------
Q 005881 531 QTRRAYEFIKSS----PIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEA----------- 595 (672)
Q Consensus 531 ~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----------- 595 (672)
++..|++.|+.. .-+.+..+.+.|..++...|.+.+|......++.+.|.++....+++-+..+.
T Consensus 695 qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t 774 (1018)
T KOG2002|consen 695 QYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRT 774 (1018)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhccccc
Confidence 999999999752 23447778899999999999999999999999999999998887777665443
Q ss_pred --------CChHHHHHHHHHHhhCCC
Q 005881 596 --------NMWDETAKVRKIMKEKSL 613 (672)
Q Consensus 596 --------g~~~~a~~~~~~~~~~~~ 613 (672)
+..++|.++|..+...+-
T Consensus 775 ~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 775 LEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 466788888888876444
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=2.4e-18 Score=174.46 Aligned_cols=287 Identities=13% Similarity=0.083 Sum_probs=186.9
Q ss_pred ccCChHHHHHHHhhCCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---hHHHHHHHHHHcCcCchHHH
Q 005881 325 KCELLEESLKTFDEMDE--H-DVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPN---LYTYSNILNISSDIPAIEWG 398 (672)
Q Consensus 325 ~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a 398 (672)
..|++++|...|.++.+ | +..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++.|
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 34444444444444433 1 222344444445555555555555555544321111 12334444445555555555
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCC--C------chhHHHHHHHHHhcCChHHHHHHHHH
Q 005881 399 KQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSK--N------LVSWNTMLVGYAQHGLGREALEIYSM 470 (672)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~------~~~~~~li~~~~~~g~~~~A~~~~~~ 470 (672)
..++..+.+.. +.+..++..++..+.+.|++++|.+.++.+.+. + ...|..+...+...|++++|.+.|++
T Consensus 127 ~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 205 (389)
T PRK11788 127 EELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK 205 (389)
T ss_pred HHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 55555554431 223445566666677777777777777666421 1 11345567777888888889888888
Q ss_pred HHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCc--hHHHHHHHHHhhccCChHHHHHHHHhC-CCCC
Q 005881 471 MQENKIKPN-DNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPR--MDHIASVVHLFACRGQTRRAYEFIKSS-PIEP 546 (672)
Q Consensus 471 m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 546 (672)
+.+. .|+ ...+..+...+.+.|++++|.++++++... .|+ ...+..++.+|...|++++|.+.++++ ...|
T Consensus 206 al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 206 ALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 8874 344 456777778888889999999988888732 343 456778888899999999999888764 3467
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHh---cCChHHHHHHHHHHhhCCCccCCc
Q 005881 547 NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAE---ANMWDETAKVRKIMKEKSLKKDTG 618 (672)
Q Consensus 547 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~ 618 (672)
+...+..+...+.+.|++++|...++++++..|++.. +..+...+.. .|+.+++..++++|.+++++++|.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7777778888899999999999999999999997654 4444444443 568999999999999888888876
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=4.7e-17 Score=172.82 Aligned_cols=350 Identities=10% Similarity=-0.033 Sum_probs=265.4
Q ss_pred cCCChhHHHHHHhcCCC------CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCchhH
Q 005881 224 KCEKLDLASRVFSNIQL------PDLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVKETIGG 297 (672)
Q Consensus 224 ~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 297 (672)
+..+++...-.|...++ .+......++..+.+.|++++|..+++........+.. .+..+..+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHH
Confidence 34444444444444432 12333455677888899999999999988876444333 334444566678999999
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005881 298 RQLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMDE--H-DVVSWNALIAGHLASCHYGEAIELLKDMLFEG 374 (672)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 374 (672)
...++.+.+.. +.+...+..+...+...|++++|...+++... | +...+..+...+...|++++|...++++....
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 99999988775 34456677788899999999999999998865 3 45678888889999999999999999887653
Q ss_pred CCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCchhHHHH
Q 005881 375 HCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSS---KNLVSWNTM 451 (672)
Q Consensus 375 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 451 (672)
|+.......+..+...|++++|...++.+.+....++......+...+.+.|++++|...|+.... .+...+..+
T Consensus 175 --P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 --PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred --CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 333322222344778899999999999887765444444555667788899999999999998763 345678889
Q ss_pred HHHHHhcCChHH----HHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHH
Q 005881 452 LVGYAQHGLGRE----ALEIYSMMQENKIKPND-NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHL 525 (672)
Q Consensus 452 i~~~~~~g~~~~----A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 525 (672)
...+...|++++ |...|++..+. .|+. ..+..+...+...|++++|...+++... ..| +...+..+..+
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~ 327 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHH
Confidence 999999999986 89999999984 5654 5788889999999999999999998874 356 45678888999
Q ss_pred hhccCChHHHHHHHHhC-CCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 005881 526 FACRGQTRRAYEFIKSS-PIEPNKVVWR-CLLSGCKTHKDLVLGRYAAEKILSTDPEDT 582 (672)
Q Consensus 526 ~~~~g~~~~A~~~~~~~-~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 582 (672)
|.+.|++++|.+.++++ ...|+...+. .+..++...|+.++|...++++++..|++.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 99999999999999874 3567654443 345668889999999999999999999764
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=4.8e-18 Score=172.27 Aligned_cols=299 Identities=15% Similarity=0.066 Sum_probs=178.6
Q ss_pred HHHHHcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhc
Q 005881 48 ISGFSQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSACASRGDARSGKEIHGRMYRSGLELN---SHVSNCLINMYGKC 124 (672)
Q Consensus 48 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~ 124 (672)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ...+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344566788888888888887753 33445677777777888888888888887776532221 24556667777777
Q ss_pred CChHHHHHHhhccCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHH
Q 005881 125 GLLSSAQFVFDASLE---RNSISWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCASVLGACAVLGNLKVGMQIHS 201 (672)
Q Consensus 125 g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 201 (672)
|+++.|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------- 178 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------- 178 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence 777777777776654 2445666667777777777777777776665432221100
Q ss_pred HHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHHHhcCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 005881 202 LVFKCALEFDKFVAMGLINLYAKCEKLDLASRVFSNIQL--P-DLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPSE 278 (672)
Q Consensus 202 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 278 (672)
....+..+...+.+.|+.++|...|+++.+ | +...+..+...+.+.|++++|.+.++++...+.....
T Consensus 179 ---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 249 (389)
T PRK11788 179 ---------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS 249 (389)
T ss_pred ---------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH
Confidence 011223334444455555555555554432 1 2334555666677777777777777777654322223
Q ss_pred hhHHHHHHHhhccCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCCC--CCcccHHHHHHHHHh
Q 005881 279 VTFSYVLGAFADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMDE--HDVVSWNALIAGHLA 356 (672)
Q Consensus 279 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~ 356 (672)
.++..+..++...|+.++|...++.+.+.. |+...+..+...+.+.|++++|..+++++.+ |+...++.++..+..
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~ 327 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLA 327 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhh
Confidence 445555566666666666666666655543 3333445666666666666666666665543 555566666655553
Q ss_pred ---cCChhHHHHHHHHHHhCCCCCChH
Q 005881 357 ---SCHYGEAIELLKDMLFEGHCPNLY 380 (672)
Q Consensus 357 ---~~~~~~A~~~~~~m~~~g~~p~~~ 380 (672)
.|+.++++.++++|.+.++.|++.
T Consensus 328 ~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 328 EAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred ccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 346666777777776666555544
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=3.8e-16 Score=169.71 Aligned_cols=362 Identities=9% Similarity=0.039 Sum_probs=203.0
Q ss_pred HHHHHHHhhcCCChhHHHHHHhcCC---CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcc
Q 005881 215 AMGLINLYAKCEKLDLASRVFSNIQ---LPDLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADV 291 (672)
Q Consensus 215 ~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 291 (672)
+..+...+.+.|++++|..+|+... ..+...+..+...+...|++++|+..+++..+. .|+...+..+..++...
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~ 129 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKRA 129 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHC
Confidence 4444444444444444444444422 122333444455555566666666666655544 22222244444445555
Q ss_pred CCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCCCCCcc--------cHHHHHHHHH-----hcC
Q 005881 292 KETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMDEHDVV--------SWNALIAGHL-----ASC 358 (672)
Q Consensus 292 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~li~~~~-----~~~ 358 (672)
|+.+.|...++.+.+... .+..++..+..++...+..+.|...++.... ++. ....++.... ..+
T Consensus 130 g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~ 207 (765)
T PRK10049 130 GRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKE 207 (765)
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhH
Confidence 555555555555555432 2333334455555566666666666665554 111 0011111111 111
Q ss_pred Ch---hHHHHHHHHHHhC-CCCCChH-HHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHH
Q 005881 359 HY---GEAIELLKDMLFE-GHCPNLY-TYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDA 433 (672)
Q Consensus 359 ~~---~~A~~~~~~m~~~-g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 433 (672)
++ ++|++.++.+.+. ...|+.. .+.. .....+..+...|++++|
T Consensus 208 r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~-------------------------------a~~d~l~~Ll~~g~~~eA 256 (765)
T PRK10049 208 RYAIADRALAQYDALEALWHDNPDATADYQR-------------------------------ARIDRLGALLARDRYKDV 256 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCccchHHHH-------------------------------HHHHHHHHHHHhhhHHHH
Confidence 12 3444444444432 1111110 0000 000001223455777778
Q ss_pred HHHHhhCCCCC---ch-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHhhccCcHHHHHHHHH
Q 005881 434 RKVFDHLSSKN---LV-SWNTMLVGYAQHGLGREALEIYSMMQENKIKPN-----DNTFIGVLSACVHIGLVEEGWHYFN 504 (672)
Q Consensus 434 ~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~ 504 (672)
+..|+.+.+.+ +. .-..+...|...|++++|+..|+++.+. .|. ......+..++...|++++|...++
T Consensus 257 ~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~ 334 (765)
T PRK10049 257 ISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYPGALTVTA 334 (765)
T ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 77777776422 11 1122456777788888888888877653 222 2345556666777888888888887
Q ss_pred HhHHhhC----------CCCc---hHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 005881 505 SMIRDHG----------ISPR---MDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRY 569 (672)
Q Consensus 505 ~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 569 (672)
.+..... ..|+ ...+..++.++...|++++|++.++++ ...| +...+..+...+...|++++|++
T Consensus 335 ~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~ 414 (765)
T PRK10049 335 HTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAEN 414 (765)
T ss_pred HHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 7763211 1122 234556777888888888888888763 3345 45677777888888888999999
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 005881 570 AAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKSL 613 (672)
Q Consensus 570 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 613 (672)
.++++++++|+++..+..++..+...|+|++|.++++.+.+..+
T Consensus 415 ~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 415 ELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 99999888898888888888888888899999888888876533
No 21
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.82 E-value=1.6e-15 Score=153.93 Aligned_cols=541 Identities=12% Similarity=0.068 Sum_probs=379.3
Q ss_pred chhHHHHHHHhHhCCCCCCcccHHHHHHHHh--cCCChhhHHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCChHHHHH
Q 005881 57 PEVALNYFRLMVCCVLEPNYYTYVGAVSACA--SRGDARSGKEIHGRMYRSGL--ELNSHVSNCLINMYGKCGLLSSAQF 132 (672)
Q Consensus 57 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~ 132 (672)
.+.|...|....+.. ++|.- ..+.++|. ..+++..|..+|........ .||+.+ .+-..+.++|+.+.|+.
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil--~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNIL--ALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALL 220 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchH--HHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHH
Confidence 488999998887753 34443 34555654 67899999999999877643 455443 33355678999999999
Q ss_pred HhhccCCCCcccHHHHHHH---HHhc---CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHh
Q 005881 133 VFDASLERNSISWVSLLSS---YCQC---GEHVHGLKIFLLSRKSGVAISEFSCASVLGACAVLGNLKVGMQIHSLVFKC 206 (672)
Q Consensus 133 ~~~~~~~~~~~~~~~li~~---~~~~---g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 206 (672)
.|.+..+-|+..-++++.. -... ..+..++.++...-... .-++...+.+-..+.-.|+++.+..+...+...
T Consensus 221 a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 221 AFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 9998887666444444322 1222 23455666555554331 234566777778888999999999999998876
Q ss_pred cCC--CcHHHHHHHHHHhhcCCChhHHHHHHhcCCC--CCc--chHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hh
Q 005881 207 ALE--FDKFVAMGLINLYAKCEKLDLASRVFSNIQL--PDL--TAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPS-EV 279 (672)
Q Consensus 207 ~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~ 279 (672)
... .-...|-.+..+|-..|++++|...|-+... ++. ..+--+...+...|+.+.+...|+..... .|| ..
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~e 377 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYE 377 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHH
Confidence 522 1233466788999999999999999987764 332 34456788999999999999999999876 354 44
Q ss_pred hHHHHHHHhhccC----CchhHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhC--------CCCCcccH
Q 005881 280 TFSYVLGAFADVK----ETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEM--------DEHDVVSW 347 (672)
Q Consensus 280 t~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~--------~~~~~~~~ 347 (672)
|...+-..|+..+ ..+.|..++....+.- +.|...|-.+..+|....-+ .+...+... ....+...
T Consensus 378 tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~L 455 (1018)
T KOG2002|consen 378 TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVL 455 (1018)
T ss_pred HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 5555545555553 3455666666555544 45666676666666554332 224444332 23567788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC---CCCCChH------HHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHH
Q 005881 348 NALIAGHLASCHYGEAIELLKDMLFE---GHCPNLY------TYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGS 418 (672)
Q Consensus 348 ~~li~~~~~~~~~~~A~~~~~~m~~~---g~~p~~~------t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 418 (672)
|.+.......|.+.+|...|.+.... ...+|.. +--.+-...-..++.+.|.+.+..+.+.... -+..|-
T Consensus 456 NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~yl 534 (1018)
T KOG2002|consen 456 NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYL 534 (1018)
T ss_pred HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHH
Confidence 99999999999999999999998765 2233332 2222334555677999999999999886421 122222
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhc--
Q 005881 419 ALVDMYAKCGRLNDARKVFDHLS---SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENK-IKPNDNTFIGVLSACVH-- 492 (672)
Q Consensus 419 ~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~-- 492 (672)
.+.-+....+...+|...+.... +.++..|..+...+.....+..|.+-|+...+.- ..+|..+..+|.+.|..
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 22222223367788888888876 5677788888889999999999998777766542 23677777777765543
Q ss_pred ----------cCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 005881 493 ----------IGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSSP--IEPNKVVWRCLLSGCK 559 (672)
Q Consensus 493 ----------~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~ 559 (672)
.+..++|+++|.... ...| +...-+.++-+++..|++.+|.++|.+.. ......+|-.+...|.
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL---~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~ 691 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVL---RNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYV 691 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHH---hcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHH
Confidence 234677888887776 3345 67778889999999999999999998752 2235567889999999
Q ss_pred hcCCHHHHHHHHHHHhcCC--CCCCchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 005881 560 THKDLVLGRYAAEKILSTD--PEDTSAHIMLSNVYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 560 ~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 611 (672)
..|++..|.+.|+..++.. .+++.....|+.++.+.|+|.+|.+........
T Consensus 692 e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 692 EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 9999999999999998643 357788889999999999999999998877653
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=1.3e-16 Score=169.48 Aligned_cols=352 Identities=9% Similarity=-0.040 Sum_probs=274.4
Q ss_pred HHhcCChhHHHHHHHHHHHC--CCCCChhhHHHHHHHhhccCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChH
Q 005881 253 YAQLGKACEAIDLFVKMFSS--GLMPSEVTFSYVLGAFADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCELLE 330 (672)
Q Consensus 253 ~~~~~~~~~a~~~~~~m~~~--~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 330 (672)
+.+..+|+.-.-.|..-.++ .-.-+......++..+.+.|+.+.|..++...+.....+....+ .++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~-~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLR-RWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHH-HHhhhHhhcCCHH
Confidence 34555555544444433221 11123344566778889999999999999999988755544444 4556667799999
Q ss_pred HHHHHHhhCCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hHHHHHHHHHHcCcCchHHHHHHHHHHH
Q 005881 331 ESLKTFDEMDE--H-DVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPN-LYTYSNILNISSDIPAIEWGKQTHCCIV 406 (672)
Q Consensus 331 ~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 406 (672)
+|...|+++.. | +...+..+...+.+.|++++|+..++++... .|+ ...+..+...+...|+.++|...++.+.
T Consensus 94 ~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 99999999875 3 4557888888999999999999999999875 554 5567778889999999999999999887
Q ss_pred hcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCC----CchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 005881 407 KPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSK----NLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNT 482 (672)
Q Consensus 407 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 482 (672)
.....+.. .+..+ ..+...|++++|...++.+.+. +...+..+...+...|++++|+..++++.+.. +.+...
T Consensus 172 ~~~P~~~~-a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 172 QEVPPRGD-MIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HhCCCCHH-HHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 66544333 33333 3477889999999999987643 23344556778899999999999999999853 333457
Q ss_pred HHHHHHHhhccCcHHH----HHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCCC-HHHHHHHH
Q 005881 483 FIGVLSACVHIGLVEE----GWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEPN-KVVWRCLL 555 (672)
Q Consensus 483 ~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~ 555 (672)
+..+...+...|++++ |...|+++. ...| +...+..++.++.+.|++++|...+++. ...|+ ...+..+.
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al---~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La 325 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHAL---QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 7788889999999986 899999887 4456 5688999999999999999999999863 45564 55677788
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 005881 556 SGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKSL 613 (672)
Q Consensus 556 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 613 (672)
..+...|++++|...++++++.+|+++..+..++.++...|++++|.+.+++..+...
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 8899999999999999999999998887777789999999999999999999876544
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=3.3e-15 Score=137.58 Aligned_cols=444 Identities=11% Similarity=0.105 Sum_probs=289.5
Q ss_pred cchHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHh--cCCChhhH-HHHHHHHHHhCCCCChhHHHHH
Q 005881 41 VISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSACA--SRGDARSG-KEIHGRMYRSGLELNSHVSNCL 117 (672)
Q Consensus 41 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~l 117 (672)
+++=|.|+. ...+|..+.+.-+|+.|...|++.+...-..+++..+ ...+..-+ .+-|-.|.+.|-. +..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc---
Confidence 345555554 4567788889999999999988888777666665543 22332222 2334444444422 22232
Q ss_pred HHHHHhcCChHHHHHHhhccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHH
Q 005881 118 INMYGKCGLLSSAQFVFDASLERNSISWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCASVLGACAVLGNLKVGM 197 (672)
Q Consensus 118 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 197 (672)
+.|.+.+ ++-+...+...++..||.++++--..+.|.++|++......+.+..+|+.+|.+-+-. .++
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGK 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccH
Confidence 2344433 4444555677899999999999999999999999999998999999999999886533 347
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 005881 198 QIHSLVFKCALEFDKFVAMGLINLYAKCEKLDLASRVFSNIQLPDLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPS 277 (672)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 277 (672)
.+..+|.+..+.||..|+|+++.+..+.|+++.|.+ .|++++.+|++-|+.|.
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVePs 311 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEPS 311 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcc
Confidence 889999999999999999888888888888877764 35677788888888888
Q ss_pred hhhHHHHHHHhhccCCchhH-HHHHHHHHH----hCCC----CchHHHHHHHHHHHccCChHHHHHHHhhCCC-------
Q 005881 278 EVTFSYVLGAFADVKETIGG-RQLHSLIIK----MGFS----SFTFVANTVLDFYSKCELLEESLKTFDEMDE------- 341 (672)
Q Consensus 278 ~~t~~~ll~~~~~~~~~~~a-~~~~~~~~~----~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------- 341 (672)
..+|..+|.-+.+.++..+. ..++.++.. ..++ .+...+...+..|.+..+.+-|.++-.-...
T Consensus 312 LsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~i 391 (625)
T KOG4422|consen 312 LSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFI 391 (625)
T ss_pred hhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhc
Confidence 88888888887777776543 233333322 2222 2344556667777777777777766554443
Q ss_pred -CC---cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHH
Q 005881 342 -HD---VVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIG 417 (672)
Q Consensus 342 -~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 417 (672)
++ ..-|..+....|+....+.-+..|+.|+-.-+-|+..+...++++....+.++-..+++..++..|........
T Consensus 392 g~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~ 471 (625)
T KOG4422|consen 392 GPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR 471 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH
Confidence 11 23456677778888889999999999998888899999999999999999999999999998887744333322
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhc-CChHH-HHHHHHHHHHCCCCCCHHHHHHHHHHhhccCc
Q 005881 418 SALVDMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQH-GLGRE-ALEIYSMMQENKIKPNDNTFIGVLSACVHIGL 495 (672)
Q Consensus 418 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~-A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 495 (672)
.-+...+++.. ..|+...-..+-...++. -++.+ ....-.+|.+..++|. ..+..+-.+.+.|.
T Consensus 472 eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t--~l~~ia~Ll~R~G~ 537 (625)
T KOG4422|consen 472 EEILMLLARDK------------LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPAT--SLNCIAILLLRAGR 537 (625)
T ss_pred HHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChh--HHHHHHHHHHHcch
Confidence 22222222221 012211111111111111 01111 1222345555444443 34444555677888
Q ss_pred HHHHHHHHHHhHHhhCCCCchHHHH---HHHHHhhccCChHHHHHHHHhC
Q 005881 496 VEEGWHYFNSMIRDHGISPRMDHIA---SVVHLFACRGQTRRAYEFIKSS 542 (672)
Q Consensus 496 ~~~a~~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~ 542 (672)
.++|.++|..+.++..-.|.....+ -+++.-.+.+....|...++-+
T Consensus 538 ~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 538 TQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 8888888887765544444444444 4455556677777777776644
No 24
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=2.6e-15 Score=160.32 Aligned_cols=249 Identities=12% Similarity=0.047 Sum_probs=157.8
Q ss_pred CchhHHHHHHHHHHhC-C-CCchHHHHHHHHHHHccCChHHHHHHHhhCCC--CC-cccHHHHHHHHHhcCChhHHHHHH
Q 005881 293 ETIGGRQLHSLIIKMG-F-SSFTFVANTVLDFYSKCELLEESLKTFDEMDE--HD-VVSWNALIAGHLASCHYGEAIELL 367 (672)
Q Consensus 293 ~~~~a~~~~~~~~~~~-~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~ 367 (672)
++++|.+.++...+.+ . +.....++.+..++...|++++|...|+...+ |+ ...|..+...+...|++++|+..|
T Consensus 309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~ 388 (615)
T TIGR00990 309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDF 388 (615)
T ss_pred hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444444444444332 1 11222344444445555555555555555433 21 223444445555555555555555
Q ss_pred HHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCC---CC
Q 005881 368 KDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSS---KN 444 (672)
Q Consensus 368 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~ 444 (672)
++..+. .| .+..++..+...+...|++++|...|++..+ .+
T Consensus 389 ~~al~~--~p----------------------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~ 432 (615)
T TIGR00990 389 DKALKL--NS----------------------------------EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF 432 (615)
T ss_pred HHHHHh--CC----------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC
Confidence 555433 22 2344556667777778888888888877763 33
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCch-H-----
Q 005881 445 LVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPN-DNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRM-D----- 517 (672)
Q Consensus 445 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~----- 517 (672)
...|..+...+.+.|++++|+..|++.+.. .|+ ...+..+...+...|++++|+..|+.... +.|+. .
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~ 507 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNV 507 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccH
Confidence 456777788888889999999999888874 444 46777888888888999999998888763 33321 1
Q ss_pred --HHHHHHHHhhccCChHHHHHHHHh-CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 005881 518 --HIASVVHLFACRGQTRRAYEFIKS-SPIEPNK-VVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDT 582 (672)
Q Consensus 518 --~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 582 (672)
.++.....+...|++++|.+++++ +.+.|+. ..+..+...+.+.|++++|...|++++++.+...
T Consensus 508 ~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 508 LPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 122222334456899999999876 4556644 4678888889999999999999999999887543
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=6.6e-15 Score=156.59 Aligned_cols=435 Identities=11% Similarity=0.074 Sum_probs=276.5
Q ss_pred HHHHhcCChHHHHHHhhccCCCCcc---cHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH---HHHHHHHhccCC
Q 005881 119 NMYGKCGLLSSAQFVFDASLERNSI---SWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSC---ASVLGACAVLGN 192 (672)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~---~~ll~~~~~~~~ 192 (672)
-...+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.. .|+...+ ..+...+...|+
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCC
Confidence 3456788888888888887654333 23377777778888888888888876 3332222 222445667788
Q ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHHHhcCCCCCcchHHHHHHHHHh--cCChhHHHHHHHHHH
Q 005881 193 LKVGMQIHSLVFKCALEFDKFVAMGLINLYAKCEKLDLASRVFSNIQLPDLTAWSALIGGYAQ--LGKACEAIDLFVKMF 270 (672)
Q Consensus 193 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~ 270 (672)
++.|.++++.+++.... ++.++..++..|...++.++|.+.++.+.+.+......+..++.. .++..+|+..++++.
T Consensus 118 yd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 118 WDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 88888888888776544 245555667777777777778777777764333222223333333 445545777777777
Q ss_pred HCCCCCC-hhhHHHHHHHhhccCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCCCCCcccHHH
Q 005881 271 SSGLMPS-EVTFSYVLGAFADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMDEHDVVSWNA 349 (672)
Q Consensus 271 ~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 349 (672)
+.. |+ ...+.....+..+.|-...|.++...- |+..+-...... +.+.+.+..+--..++.
T Consensus 197 ~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~----- 258 (822)
T PRK14574 197 RLA--PTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----ERDAAAEQVRMAVLPTR----- 258 (822)
T ss_pred HhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----HHHHHHHHHhhcccccc-----
Confidence 652 43 333455555555666555555444431 111110000000 01111111111100000
Q ss_pred HHHHHHhcCC---hhHHHHHHHHHHhC-CCCCChH-HH----HHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHH
Q 005881 350 LIAGHLASCH---YGEAIELLKDMLFE-GHCPNLY-TY----SNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSAL 420 (672)
Q Consensus 350 li~~~~~~~~---~~~A~~~~~~m~~~-g~~p~~~-t~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 420 (672)
....+ .+.|+.-++.+... +..|... -| .--+-++...++...+...++.+...+.+....+-.++
T Consensus 259 -----~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 259 -----SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred -----cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 00111 34455555555542 2223221 11 22345677788888888888888887766566677888
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCC---------CchhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------CCCH
Q 005881 421 VDMYAKCGRLNDARKVFDHLSSK---------NLVSWNTMLVGYAQHGLGREALEIYSMMQENKI-----------KPND 480 (672)
Q Consensus 421 ~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~~ 480 (672)
.++|...+++++|..+|+.+... +......|.-+|..++++++|..+++++.+.-. .||+
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 89999999999999999887532 122246678888899999999999999887311 1222
Q ss_pred --H-HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCCC-HHHHHHH
Q 005881 481 --N-TFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEPN-KVVWRCL 554 (672)
Q Consensus 481 --~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l 554 (672)
. .+..++..+...|++.+|++.++.+.. ..| |......+.+++...|.+.+|++.++.. .+.|+ ..+....
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~---~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~ 490 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSS---TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQ 490 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHH
Confidence 2 344556677889999999999999873 355 7889999999999999999999999763 35674 4466677
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCch
Q 005881 555 LSGCKTHKDLVLGRYAAEKILSTDPEDTSA 584 (672)
Q Consensus 555 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 584 (672)
+..+...+++++|..+.+.+++..|+++..
T Consensus 491 ~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 491 AETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 777888899999999999999999988754
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=1.3e-14 Score=154.37 Aligned_cols=436 Identities=11% Similarity=0.051 Sum_probs=273.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCC
Q 005881 150 SSYCQCGEHVHGLKIFLLSRKSGVAISE--FSCASVLGACAVLGNLKVGMQIHSLVFKCALEFDKFVAMGLINLYAKCEK 227 (672)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 227 (672)
-...+.|+++.|++.|++..+. .|+. ..+ .++..+...|+.++|...++..+ ............+...|...|+
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCC
Confidence 3456778888888888877764 3443 122 55566666677777777776666 1111122233333456666677
Q ss_pred hhHHHHHHhcCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCchhHHHHHHHH
Q 005881 228 LDLASRVFSNIQL--P-DLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVKETIGGRQLHSLI 304 (672)
Q Consensus 228 ~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 304 (672)
+++|.++|+++.+ | +...+..++..+.+.++.++|+..++++... .|+...+..+...+...++..+|.+.++.+
T Consensus 118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 118 WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 7777777766653 2 2334445556666667777777776666554 344444433333333344444466666666
Q ss_pred HHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHH
Q 005881 305 IKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMDEHDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSN 384 (672)
Q Consensus 305 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ 384 (672)
.+.. +.+...+..++.+..+.|-...|.++..+-+. ..+-...... +.+.|.+ +++.+..|+.
T Consensus 196 l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~--~f~~~~~~~l-----~~~~~a~----~vr~a~~~~~----- 258 (822)
T PRK14574 196 VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPN--LVSAEHYRQL-----ERDAAAE----QVRMAVLPTR----- 258 (822)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc--ccCHHHHHHH-----HHHHHHH----HHhhcccccc-----
Confidence 6654 33455555566666666666666655554332 1111000000 0111111 1111111110
Q ss_pred HHHHHcCcCc---hHHHHHHHHHHHhc-CCCCc-ccHH-HH---HHHHHHhcCCHHHHHHHHhhCCCCC--c--hhHHHH
Q 005881 385 ILNISSDIPA---IEWGKQTHCCIVKP-GFDSN-VVIG-SA---LVDMYAKCGRLNDARKVFDHLSSKN--L--VSWNTM 451 (672)
Q Consensus 385 ll~~~~~~~~---~~~a~~~~~~~~~~-~~~~~-~~~~-~~---l~~~~~~~g~~~~A~~~~~~~~~~~--~--~~~~~l 451 (672)
....+ .+.+..-++.+... +-.|. ...+ .+ .+-++.+.|++.++++.|+.+..+. + .+-..+
T Consensus 259 -----~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 259 -----SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred -----cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 01112 23344444444432 22232 1222 22 2345678899999999999998432 2 355678
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhC----------CCCch
Q 005881 452 LVGYAQHGLGREALEIYSMMQENK-----IKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHG----------ISPRM 516 (672)
Q Consensus 452 i~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------~~p~~ 516 (672)
..+|...+++++|+.+|+++.... ..++......|..++..++++++|..+++.+.+... -.|++
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 899999999999999999997643 122333457899999999999999999999975211 12332
Q ss_pred ---HHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 005881 517 ---DHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNV 591 (672)
Q Consensus 517 ---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 591 (672)
.....++..+...|++.+|++.++++ ...| |...+..+...+...|.+.+|++.++.+..++|++..+....+.+
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAET 493 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHH
Confidence 44556788889999999999999875 3456 777888899999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHhhCCC
Q 005881 592 YAEANMWDETAKVRKIMKEKSL 613 (672)
Q Consensus 592 ~~~~g~~~~a~~~~~~~~~~~~ 613 (672)
+...|+|++|.++.+.+.++.+
T Consensus 494 al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 494 AMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHhhhhHHHHHHHHHHHHhhCC
Confidence 9999999999999987766544
No 27
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.76 E-value=4.7e-14 Score=153.44 Aligned_cols=397 Identities=13% Similarity=0.053 Sum_probs=212.9
Q ss_pred HHHHHHcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 005881 47 LISGFSQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSACASRGDARSGKEIHGRMYRSGLELNSHVSNCLINMYGKCGL 126 (672)
Q Consensus 47 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 126 (672)
.+......|+.++|+++|.+..... +.+...+..+...+...|++++|..+++..++.. +.+...+..+...+...|+
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 3445556666666666666665421 2333345566666666666666666666666553 2234445555556666666
Q ss_pred hHHHHHHhhccCC--C-CcccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHH
Q 005881 127 LSSAQFVFDASLE--R-NSISWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCASVLGACAVLGNLKVGMQIHSLV 203 (672)
Q Consensus 127 ~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 203 (672)
.++|...+++... | +.. |..+...+...|++++|+..++++.+. .|+
T Consensus 99 ~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~--------------------------- 148 (765)
T PRK10049 99 YDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQ--------------------------- 148 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC---------------------------
Confidence 6666666655432 1 333 555555555566666666666555553 222
Q ss_pred HHhcCCCcHHHHHHHHHHhhcCCChhHHHHHHhcCCC-CCc------chHHHHHHHHH-----hcCCh---hHHHHHHHH
Q 005881 204 FKCALEFDKFVAMGLINLYAKCEKLDLASRVFSNIQL-PDL------TAWSALIGGYA-----QLGKA---CEAIDLFVK 268 (672)
Q Consensus 204 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~------~~~~~li~~~~-----~~~~~---~~a~~~~~~ 268 (672)
+...+..+..++...|..+.|...++.... |+. ......+.... ..+++ ++|+..++.
T Consensus 149 -------~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 149 -------TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDA 221 (765)
T ss_pred -------CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHH
Confidence 222223334444444555555555544442 110 01111111111 11223 567777777
Q ss_pred HHHC-CCCCChh-hHHH----HHHHhhccCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCCCC
Q 005881 269 MFSS-GLMPSEV-TFSY----VLGAFADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMDEH 342 (672)
Q Consensus 269 m~~~-~~~p~~~-t~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 342 (672)
+.+. ...|+.. .+.. .+.++...++.++|...|+.+.+.+.+........+..+|...|++++|...|+++...
T Consensus 222 ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~ 301 (765)
T PRK10049 222 LEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH 301 (765)
T ss_pred HHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 7653 2223221 1111 12334455667777777777666543211111222455667777777777777765432
Q ss_pred C-------cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChH-HHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCc-
Q 005881 343 D-------VVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLY-TYSNILNISSDIPAIEWGKQTHCCIVKPGFDSN- 413 (672)
Q Consensus 343 ~-------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~- 413 (672)
+ ......+..++...|++++|.+.++++... .|... .+.. ....|+
T Consensus 302 ~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~--~P~~~~~~~~-----------------------~~~~p~~ 356 (765)
T PRK10049 302 PETIADLSDEELADLFYSLLESENYPGALTVTAHTINN--SPPFLRLYGS-----------------------PTSIPND 356 (765)
T ss_pred CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc--CCceEeecCC-----------------------CCCCCCc
Confidence 1 122344555666777777777777777654 22111 0000 000122
Q ss_pred --ccHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 005881 414 --VVIGSALVDMYAKCGRLNDARKVFDHLS---SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPND-NTFIGVL 487 (672)
Q Consensus 414 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll 487 (672)
...+..+...+...|++++|++.++++. ..+...+..+...+...|++++|++.+++... +.|+. ..+....
T Consensus 357 ~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a 434 (765)
T PRK10049 357 DWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQA 434 (765)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHH
Confidence 1233455666777788888888887765 23455677777778888888888888888777 35664 3455555
Q ss_pred HHhhccCcHHHHHHHHHHhHHh
Q 005881 488 SACVHIGLVEEGWHYFNSMIRD 509 (672)
Q Consensus 488 ~~~~~~g~~~~a~~~~~~~~~~ 509 (672)
..+...|++++|..+++.+.+.
T Consensus 435 ~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 435 WTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHhCCHHHHHHHHHHHHHh
Confidence 6677778888888888887743
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=1.2e-14 Score=134.02 Aligned_cols=257 Identities=14% Similarity=0.132 Sum_probs=182.6
Q ss_pred CCcchHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHHHH
Q 005881 39 RNVISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSACASRGDARSGKEIHGRMYRSGLELNSHVSNCLI 118 (672)
Q Consensus 39 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 118 (672)
.+..+|..+|.++|+-...+.|.++|++-.....+.+..+||.+|.+-.-. ..+++..+|......||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHH
Confidence 466778888888888888888888888888777788888888888765433 3377888888888888888888888
Q ss_pred HHHHhcCChHHHHHHhhccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHH-HH
Q 005881 119 NMYGKCGLLSSAQFVFDASLERNSISWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCASVLGACAVLGNLKV-GM 197 (672)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-a~ 197 (672)
+..++.|+++.|... |++++.+|++.|+.|.-.+|..+|...++.++..+ +.
T Consensus 281 ~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred HHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 888888888777543 45666777777777777777777777766666543 33
Q ss_pred HHHHHHHHh--c--C----CCcHHHHHHHHHHhhcCCChhHHHHHHhcCCC--------CC---cchHHHHHHHHHhcCC
Q 005881 198 QIHSLVFKC--A--L----EFDKFVAMGLINLYAKCEKLDLASRVFSNIQL--------PD---LTAWSALIGGYAQLGK 258 (672)
Q Consensus 198 ~~~~~~~~~--~--~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------~~---~~~~~~li~~~~~~~~ 258 (672)
.+..++... | + +.|...+..-+..+.+..+.+-|.++-.-... ++ ..-|..+....++...
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 344443322 2 1 12334455555555566666666655443321 11 1235567778888889
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHcc
Q 005881 259 ACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKC 326 (672)
Q Consensus 259 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 326 (672)
.+.-...|+.|.-+-.-|+..+...++++....+.++-..+++..++..|-.........++..+++.
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~ 481 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD 481 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC
Confidence 99999999999988888999999999999999999999999999999888655555544444444443
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.75 E-value=3.9e-12 Score=123.84 Aligned_cols=485 Identities=10% Similarity=0.032 Sum_probs=371.8
Q ss_pred CChHHHHHHhhccCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHH
Q 005881 125 GLLSSAQFVFDASLE---RNSISWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCASVLGACAVLGNLKVGMQIHS 201 (672)
Q Consensus 125 g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 201 (672)
...++|+-++.+..+ .+.. |.-+|++..-++.|..+++..++. +..+...|.+....=-..|+.+....+.+
T Consensus 390 E~~~darilL~rAveccp~s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~ 464 (913)
T KOG0495|consen 390 EEPEDARILLERAVECCPQSMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIID 464 (913)
T ss_pred cChHHHHHHHHHHHHhccchHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 344445555554332 1223 334566667788899999988875 66677788777776678888888888776
Q ss_pred HHH----HhcCCCcHHHHHHHHHHhhcCCChhHHHHHHhcCCC------CCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 005881 202 LVF----KCALEFDKFVAMGLINLYAKCEKLDLASRVFSNIQL------PDLTAWSALIGGYAQLGKACEAIDLFVKMFS 271 (672)
Q Consensus 202 ~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 271 (672)
.-+ ..|+..+..-|-.=...+-..|..-.+..+...+.. .--.+|+.-...|.+.+.++-|..+|....+
T Consensus 465 rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq 544 (913)
T KOG0495|consen 465 RGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ 544 (913)
T ss_pred HHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh
Confidence 643 457888877777777777777777776666665531 2335788888899999999999999988876
Q ss_pred CCCCCChhhHHHHHHHhhccCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCCC---CCcccHH
Q 005881 272 SGLMPSEVTFSYVLGAFADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMDE---HDVVSWN 348 (672)
Q Consensus 272 ~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~ 348 (672)
. .+-+...+......--..|..+....+++.+...- +-....+-.....+-..|++..|+.++...-+ .+...|-
T Consensus 545 v-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwl 622 (913)
T KOG0495|consen 545 V-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWL 622 (913)
T ss_pred h-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHH
Confidence 4 23344455555555556777888888888887764 34455666667777788999999999988765 3445787
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcC
Q 005881 349 ALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCG 428 (672)
Q Consensus 349 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (672)
+-+.....+.+++.|..+|.+.... .|+...|.--++.---.++.++|.+++++.++. ++.-...|-.+.+.+-+.+
T Consensus 623 aavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~ 699 (913)
T KOG0495|consen 623 AAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQME 699 (913)
T ss_pred HHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHH
Confidence 8888888999999999999998864 666666666666666678899999999888775 3445567888889999999
Q ss_pred CHHHHHHHHhhCCC--CC-chhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHH
Q 005881 429 RLNDARKVFDHLSS--KN-LVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNS 505 (672)
Q Consensus 429 ~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 505 (672)
+++.|++.|..-.+ |+ +..|-.|...--+.|+..+|..+|++.+-.+ +-|...|...+..-.+.|+.+.|..+..+
T Consensus 700 ~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 700 NIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred HHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999987663 44 4578888888888899999999999998875 55667899999999999999999999888
Q ss_pred hHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchH
Q 005881 506 MIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAH 585 (672)
Q Consensus 506 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 585 (672)
..++ .+.+...|.--|.+..+.++-..+.+.+++.. -|+.+.-.+...+....+++.|..-|+++++.+|++-.+|
T Consensus 779 ALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~w 854 (913)
T KOG0495|consen 779 ALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAW 854 (913)
T ss_pred HHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHH
Confidence 8754 34466788888999999999888888888864 4666666777788899999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCccCCceeEEEeCC
Q 005881 586 IMLSNVYAEANMWDETAKVRKIMKEKSLKKDTGCSWTELQN 626 (672)
Q Consensus 586 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (672)
..+-..+...|.-++-.+++.+... .++.-|..|..+..
T Consensus 855 a~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 855 AWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHHhh
Confidence 9999999999999999999998865 34456777864443
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.74 E-value=8.3e-13 Score=133.63 Aligned_cols=581 Identities=13% Similarity=0.038 Sum_probs=363.6
Q ss_pred hcCCChhHHHHHhccCCC---CCcchHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhcCCChhhHHH
Q 005881 21 VKFSRINDAQKLFDEMPE---RNVISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSACASRGDARSGKE 97 (672)
Q Consensus 21 ~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 97 (672)
.-.|+.++|.+++.++.. .+...|..|...|-+.|+.++++..+-..--.. |-|..-|..+.......|++.+|.-
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence 344999999999999876 467789999999999999999988776554332 4456788888888999999999999
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhhccCCCCc----c----cHHHHHHHHHhcCChHHHHHHHHHHH
Q 005881 98 IHGRMYRSGLELNSHVSNCLINMYGKCGLLSSAQFVFDASLERNS----I----SWVSLLSSYCQCGEHVHGLKIFLLSR 169 (672)
Q Consensus 98 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~----~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (672)
++.+.++.. +++....-.-...|-+.|+...|.+.|.++...+. . .--.++..+...++-+.|++.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999986 34555666677889999999999888877655332 1 12234566677777788998888777
Q ss_pred hC-CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhcC---------------------------CCcHHH-HHHHHH
Q 005881 170 KS-GVAISEFSCASVLGACAVLGNLKVGMQIHSLVFKCAL---------------------------EFDKFV-AMGLIN 220 (672)
Q Consensus 170 ~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------------------------~~~~~~-~~~li~ 220 (672)
.. +-..+...++.++..+.+...++.+............ .++..+ ...+..
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 63 2334455666777777777777777666655554211 222223 111111
Q ss_pred HhhcCCChhHHHHHHhcCC----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCchh
Q 005881 221 LYAKCEKLDLASRVFSNIQ----LPDLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVKETIG 296 (672)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 296 (672)
...+.+...++..-|-... ..++..|..+..+|.+.|++.+|+.+|..+.....--+...|..+-.++-..|..+.
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 2223333334433332221 234556788889999999999999999999887655667788888889999999999
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCCCCCcc------------cHHHHHHHHHhcCChhHHH
Q 005881 297 GRQLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMDEHDVV------------SWNALIAGHLASCHYGEAI 364 (672)
Q Consensus 297 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~li~~~~~~~~~~~A~ 364 (672)
|.+.++.++... +.+..+--+|...+.+.|+.++|.+++..+..||.. ..-.....+.+.|+.++=+
T Consensus 468 A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 468 AIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999988764 334455567888899999999999999998776622 1122334566777777655
Q ss_pred HHHHHHHhCC----------------------CCCChHHHHHHHHHHcCcCchHHHHHHHHH------HHhcCCCCcc--
Q 005881 365 ELLKDMLFEG----------------------HCPNLYTYSNILNISSDIPAIEWGKQTHCC------IVKPGFDSNV-- 414 (672)
Q Consensus 365 ~~~~~m~~~g----------------------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~------~~~~~~~~~~-- 414 (672)
.+-..|+... ..-...+.-.+..+-.+.++.....+-... ....++..+.
T Consensus 547 ~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwf 626 (895)
T KOG2076|consen 547 NTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWF 626 (895)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHH
Confidence 4444443211 111122222233333333332222111111 1111222111
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-----ch----hHHHHHHHHHhcCChHHHHHHHHHHHHC-CC--CCCHH-
Q 005881 415 VIGSALVDMYAKCGRLNDARKVFDHLSSKN-----LV----SWNTMLVGYAQHGLGREALEIYSMMQEN-KI--KPNDN- 481 (672)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~--~p~~~- 481 (672)
..+.-++..+++.++.++|..+...+...+ .. .-...+.+.+..+++..|...++.|... +. .|...
T Consensus 627 el~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~ 706 (895)
T KOG2076|consen 627 ELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLN 706 (895)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 234557778889999999999888776321 11 2244556677888999999888888764 11 22222
Q ss_pred HHHHHHHHhhc-----------------------------------cCcHHHHHHHHHHhHHhhCCCCch-HHHHHHHHH
Q 005881 482 TFIGVLSACVH-----------------------------------IGLVEEGWHYFNSMIRDHGISPRM-DHIASVVHL 525 (672)
Q Consensus 482 ~~~~ll~~~~~-----------------------------------~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~ 525 (672)
.|+..++...+ .+.+..|+..+-... ...|+. -+--+|+.+
T Consensus 707 l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~---~~~pd~Pl~nl~lgla 783 (895)
T KOG2076|consen 707 LWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAF---RQNPDSPLINLCLGLA 783 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHH---HhCCCCcHHHHHHHHH
Confidence 23322222222 244555555544433 334442 222222222
Q ss_pred hh----------ccCChHHHHHHHHh---CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC---------
Q 005881 526 FA----------CRGQTRRAYEFIKS---SPI-EPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDT--------- 582 (672)
Q Consensus 526 ~~----------~~g~~~~A~~~~~~---~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~--------- 582 (672)
+. |.-.+-....++++ +.. .....++-.+..+|...|=...|...|++++++.|.+.
T Consensus 784 fih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~d 863 (895)
T KOG2076|consen 784 FIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYD 863 (895)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCccc
Confidence 21 11122333444432 211 11344566678888888888888888888888876421
Q ss_pred ---chHHHHHHHHHhcCChHHHHHHHHH
Q 005881 583 ---SAHIMLSNVYAEANMWDETAKVRKI 607 (672)
Q Consensus 583 ---~~~~~l~~~~~~~g~~~~a~~~~~~ 607 (672)
.+-.+|.-+|...|+.+-|.++.++
T Consensus 864 LrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 864 LRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 2344677788888888888887764
No 31
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.74 E-value=4.5e-15 Score=148.77 Aligned_cols=512 Identities=13% Similarity=0.050 Sum_probs=261.0
Q ss_pred cccCCCCCcchhhHHHHHHhcCCChhHHHHHhccCCC----CCcchHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCcc
Q 005881 2 ITSGFHPNVITYNHLLLMYVKFSRINDAQKLFDEMPE----RNVISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNYY 77 (672)
Q Consensus 2 ~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 77 (672)
...|+.||-+||..++..||..|+.+.|- +|..|.- -+...++.++.+..++++.+.+. .|.+.
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aD 84 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLAD 84 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchh
Confidence 45799999999999999999999999999 8877764 23445667777777776666554 46667
Q ss_pred cHHHHHHHHhcCCChhhHHHHHH---HHH----HhCCC-CChhH-------------HHHHHHHHHhcCChHHHHHHhhc
Q 005881 78 TYVGAVSACASRGDARSGKEIHG---RMY----RSGLE-LNSHV-------------SNCLINMYGKCGLLSSAQFVFDA 136 (672)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~---~~~----~~g~~-~~~~~-------------~~~li~~~~~~g~~~~a~~~~~~ 136 (672)
||..++.+|...||+..-..+-. .+. ..|+. |.... -...+....-.|-++.+.+++..
T Consensus 85 tyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~ 164 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAK 164 (1088)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777777777776544222211 111 11210 00000 01111112222333333333322
Q ss_pred cC---------------------------------C-CCcccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHH
Q 005881 137 SL---------------------------------E-RNSISWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCAS 182 (672)
Q Consensus 137 ~~---------------------------------~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 182 (672)
++ + ++..+|.+++..-.-+|+.+.|..++..|++.|+..+..-|-.
T Consensus 165 ~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwp 244 (1088)
T KOG4318|consen 165 VPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWP 244 (1088)
T ss_pred CCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchh
Confidence 22 1 4556667777777777777777777777777777766665555
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhcC-----
Q 005881 183 VLGACAVLGNLKVGMQIHSLVFKCALEFDKFVAMGLINLYAKCEKLDLASRVFSNIQLPDLTAWSALIGGYAQLG----- 257 (672)
Q Consensus 183 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~----- 257 (672)
+|-+ .++...+..+++-|...|+.|+..|+...+..+...|....+.... ++...+.+-+..-+-.|
T Consensus 245 Ll~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~s-----q~~hg~tAavrsaa~rg~~a~k 316 (1088)
T KOG4318|consen 245 LLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGS-----QLAHGFTAAVRSAACRGLLANK 316 (1088)
T ss_pred hhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccccc-----chhhhhhHHHHHHHhcccHhHH
Confidence 5544 5666666777777777777777777666555555544422221111 11111111111111112
Q ss_pred Ch-----hHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCchhHHHHHHHHHHhCC---CCchHHHHHHHHHHHcc---
Q 005881 258 KA-----CEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVKETIGGRQLHSLIIKMGF---SSFTFVANTVLDFYSKC--- 326 (672)
Q Consensus 258 ~~-----~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~--- 326 (672)
+. .-....+.+..-.|+......|...... ...|.-+.++++-..+..--. ..++..+..++.-|.+.
T Consensus 317 ~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~ 395 (1088)
T KOG4318|consen 317 RLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIER 395 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHh
Confidence 11 1111111111112333333333222222 224555555555444432111 11122233333322221
Q ss_pred -------------------CChHHHHHHHhhCCC----------------CCccc-----------HHHHHHHHHhcCCh
Q 005881 327 -------------------ELLEESLKTFDEMDE----------------HDVVS-----------WNALIAGHLASCHY 360 (672)
Q Consensus 327 -------------------~~~~~a~~~~~~~~~----------------~~~~~-----------~~~li~~~~~~~~~ 360 (672)
....+..++...... +...+ -+.++..++..-+.
T Consensus 396 ~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~ 475 (1088)
T KOG4318|consen 396 HICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNK 475 (1088)
T ss_pred hHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 111111111111110 01111 12233334443333
Q ss_pred hHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhc--CCCCcccHHHHHHHHHHhcCCHHHHHHHHh
Q 005881 361 GEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKP--GFDSNVVIGSALVDMYAKCGRLNDARKVFD 438 (672)
Q Consensus 361 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 438 (672)
.+++..-+..... .-| ..|..+++-|......+.|..+.++.... .+..+...+..+.+.+.+.+...++..++.
T Consensus 476 lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~ 552 (1088)
T KOG4318|consen 476 LKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILY 552 (1088)
T ss_pred HHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHh
Confidence 4443322222211 111 45677777777777777777777776543 344566666777777777777888887777
Q ss_pred hCCC-----CC-chhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCC
Q 005881 439 HLSS-----KN-LVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGI 512 (672)
Q Consensus 439 ~~~~-----~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 512 (672)
++.+ ++ ..+.--+..+.+..|+.+...++++-....|+.-+ .-++....+.++...|.++++....++..
T Consensus 553 e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qkyk~ 628 (1088)
T KOG4318|consen 553 EDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQKYKP 628 (1088)
T ss_pred hhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHHHHhcC
Confidence 7763 11 12334455666677777777777777766665432 22334455566667777766666555555
Q ss_pred CC-chHHHHHHHH------------------HhhccCChHHHHHHHHh
Q 005881 513 SP-RMDHIASVVH------------------LFACRGQTRRAYEFIKS 541 (672)
Q Consensus 513 ~p-~~~~~~~l~~------------------~~~~~g~~~~A~~~~~~ 541 (672)
.| +.+.+..++. .|.+.|+..+|.++.+.
T Consensus 629 ~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~et 676 (1088)
T KOG4318|consen 629 YPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITET 676 (1088)
T ss_pred ChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhcccc
Confidence 55 2344444333 25566666666666553
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.73 E-value=1.1e-12 Score=132.69 Aligned_cols=518 Identities=14% Similarity=0.111 Sum_probs=276.1
Q ss_pred CChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhhc---cCCCCcccHHHHHHHHHhcCChHHHHHHHH
Q 005881 90 GDARSGKEIHGRMYRSGLELNSHVSNCLINMYGKCGLLSSAQFVFDA---SLERNSISWVSLLSSYCQCGEHVHGLKIFL 166 (672)
Q Consensus 90 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 166 (672)
|++++|..++.++++.. +.+...|-.|-..|-..|+.+++...+-- +...|..-|..+.....+.|+++.|.-+|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 66666666666666654 23455566666666666666666544432 222344556666666666666666666666
Q ss_pred HHHhCCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCcHHHHHHH----HHHhhcCCChhHHHHHHhcCCC-
Q 005881 167 LSRKSGVAISE-FSCASVLGACAVLGNLKVGMQIHSLVFKCALEFDKFVAMGL----INLYAKCEKLDLASRVFSNIQL- 240 (672)
Q Consensus 167 ~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~g~~~~a~~~~~~~~~- 240 (672)
+.++. .|+. ..+---...|-+.|+...|..-+.++.+...+.|..-...+ +..|...++-+.|.+.++....
T Consensus 232 rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 232 RAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 66553 2222 22222333445566666666666666555443332222222 2334444555556555555432
Q ss_pred ----CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC----------------------ChhhH----HHHHHHhhc
Q 005881 241 ----PDLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMP----------------------SEVTF----SYVLGAFAD 290 (672)
Q Consensus 241 ----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p----------------------~~~t~----~~ll~~~~~ 290 (672)
-+...++.++..|.+...++.+......+......+ +...| ..+.-++.+
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 233455666666666666666666666555411111 11111 122233344
Q ss_pred cCCchhHHHHHHHHHHhC--CCCchHHHHHHHHHHHccCChHHHHHHHhhCCC----CCcccHHHHHHHHHhcCChhHHH
Q 005881 291 VKETIGGRQLHSLIIKMG--FSSFTFVANTVLDFYSKCELLEESLKTFDEMDE----HDVVSWNALIAGHLASCHYGEAI 364 (672)
Q Consensus 291 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~ 364 (672)
.+..+...-+.....+.. ..-+...|.-+.++|...|.+.+|..+|..+.. .+...|-.+..+|...|.+++|+
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 555555555555555555 233455666666677777777777777766654 24456666666666777777777
Q ss_pred HHHHHHHhCCCCCChH-HHHHHHHHHcCcCchHHHHHHHHHHH--------hcCCCCcccHHHHHHHHHHhcCCHHHHHH
Q 005881 365 ELLKDMLFEGHCPNLY-TYSNILNISSDIPAIEWGKQTHCCIV--------KPGFDSNVVIGSALVDMYAKCGRLNDARK 435 (672)
Q Consensus 365 ~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 435 (672)
+.|+..+.. .|+.. .-..|-..+.+.|+.++|.+.+..+. ..+..|...+.-...+.+.+.|+.++=..
T Consensus 470 e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 470 EFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 777666654 44332 22223334556666666666666533 12233444443344445555555444222
Q ss_pred HHhhCC-----------------------------------------------------------------CCCch----
Q 005881 436 VFDHLS-----------------------------------------------------------------SKNLV---- 446 (672)
Q Consensus 436 ~~~~~~-----------------------------------------------------------------~~~~~---- 446 (672)
+-..|. .-...
T Consensus 548 t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe 627 (895)
T KOG2076|consen 548 TASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE 627 (895)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence 111110 00001
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCH-H-HH-HHHHHHhhccCcHHHHHHHHHHhHHhhCCCCch---HH
Q 005881 447 SWNTMLVGYAQHGLGREALEIYSMMQENKI--KPND-N-TF-IGVLSACVHIGLVEEGWHYFNSMIRDHGISPRM---DH 518 (672)
Q Consensus 447 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~-~-~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~ 518 (672)
.+.-++.++++.+++++|+.+...+....+ .++. . .+ ...+.++...+++..|...++.|...++...++ ..
T Consensus 628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l 707 (895)
T KOG2076|consen 628 LFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNL 707 (895)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 134467788899999999999988877532 2222 1 22 334556678899999999999988665444332 44
Q ss_pred HHHHHHHhhc-----------------------------------cCChHHHHHHHHh-CCCCCCHHHHHHHHHH-H---
Q 005881 519 IASVVHLFAC-----------------------------------RGQTRRAYEFIKS-SPIEPNKVVWRCLLSG-C--- 558 (672)
Q Consensus 519 ~~~l~~~~~~-----------------------------------~g~~~~A~~~~~~-~~~~p~~~~~~~l~~~-~--- 558 (672)
|++....+.+ ++.+.-|+..+-+ ....|+.+..+.+++. +
T Consensus 708 ~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~ 787 (895)
T KOG2076|consen 708 WNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHL 787 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 5533333322 3334444433221 1122332222222211 1
Q ss_pred -------HhcCCHHHHHHHHHHHhcCCCC--CCchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 005881 559 -------KTHKDLVLGRYAAEKILSTDPE--DTSAHIMLSNVYAEANMWDETAKVRKIMKEKS 612 (672)
Q Consensus 559 -------~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 612 (672)
.+|-.+.++...+.+..++... .-.+..+++.+|-..|-..-|...+++..+-.
T Consensus 788 a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 788 ALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 1112234455555555544432 45678899999999999999999999987643
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=2.9e-14 Score=132.33 Aligned_cols=270 Identities=13% Similarity=0.102 Sum_probs=192.2
Q ss_pred HHHccCChHHHHHHHhhCCCCCcccHHHH-----HHHHHh-cCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCch
Q 005881 322 FYSKCELLEESLKTFDEMDEHDVVSWNAL-----IAGHLA-SCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAI 395 (672)
Q Consensus 322 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l-----i~~~~~-~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 395 (672)
-|.+.|+++.|.++++-..+.|..+-++- .--|.+ ..++..|.++-+...... +-+......--+.....|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 35566777777766666655443322221 112222 234555555544443221 11222222222234456777
Q ss_pred HHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005881 396 EWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLS---SKNLVSWNTMLVGYAQHGLGREALEIYSMMQ 472 (672)
Q Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 472 (672)
++|...+++.....-......||. .-.+-+.|++++|.+.|-++. ..+....-.+...|-...++..|++++.+..
T Consensus 507 dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 777777777776543333333332 334667899999999998765 5667777778888999999999999998876
Q ss_pred HCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCCCHHH
Q 005881 473 ENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEPNKVV 550 (672)
Q Consensus 473 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 550 (672)
.. ++.|+.....|...|-+.|+-.+|.+.+-. .+...| +.++...|..-|....-+++|..+|++. -+.|+..-
T Consensus 586 sl-ip~dp~ilskl~dlydqegdksqafq~~yd---syryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 586 SL-IPNDPAILSKLADLYDQEGDKSQAFQCHYD---SYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred cc-CCCCHHHHHHHHHHhhcccchhhhhhhhhh---cccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 64 455567788899999999999999988753 344455 8899999999999999999999999875 47899999
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCC
Q 005881 551 WRCLLSGCK-THKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANM 597 (672)
Q Consensus 551 ~~~l~~~~~-~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 597 (672)
|..++..|. +.|+++.|...|+...+..|.+...+..|+++....|.
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999998875 56999999999999999999999999999998887774
No 34
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.69 E-value=3.9e-13 Score=135.13 Aligned_cols=524 Identities=13% Similarity=0.032 Sum_probs=285.7
Q ss_pred HHHHhHhCCCCCCcccHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhhccCCCCc
Q 005881 63 YFRLMVCCVLEPNYYTYVGAVSACASRGDARSGKEIHGRMYRSGLELNSHVSNCLINMYGKCGLLSSAQFVFDASLERNS 142 (672)
Q Consensus 63 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 142 (672)
++-.+...|+.|+..||.+++..||..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. +|..
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~a 83 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLA 83 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCch
Confidence 4455556666666666666666666666666666 6666666655556666666666666666655543 4556
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHH-H-------HhCCCCCChhhHHHHHHHHhcc-CCh------HHHHHHHHHHHHhc
Q 005881 143 ISWVSLLSSYCQCGEHVHGLKIFLL-S-------RKSGVAISEFSCASVLGACAVL-GNL------KVGMQIHSLVFKCA 207 (672)
Q Consensus 143 ~~~~~li~~~~~~g~~~~a~~~~~~-m-------~~~g~~p~~~t~~~ll~~~~~~-~~~------~~a~~~~~~~~~~~ 207 (672)
.+|..|..+|.+.|+... ++..++ | ...|+.-...-+-..+++|-.. .+. ..-+.+++..++.+
T Consensus 84 Dtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666443 111111 1 1122221111222222221110 000 01112233333332
Q ss_pred C-CCc-----HHHHHHHHHHhhc-CCChhHHHHHHhcCCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 005881 208 L-EFD-----KFVAMGLINLYAK-CEKLDLASRVFSNIQL-PDLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPSEV 279 (672)
Q Consensus 208 ~-~~~-----~~~~~~li~~~~~-~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 279 (672)
. .|. ++.. +++-... ...+++-..+.+...+ ++..+|.++++.-..+|+.+.|..++.+|++.|++.+.+
T Consensus 163 ~~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 163 AKVPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred hhCCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 1 110 1111 1222221 2234444444444444 899999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhccCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCC
Q 005881 280 TFSYVLGAFADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMDEHDVVSWNALIAGHLASCH 359 (672)
Q Consensus 280 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 359 (672)
-|..++-+ .++......++.-|.+.|+.|+..++...+-.+.+.|....+... .+....+++-...-.-.|
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~-----sq~~hg~tAavrsaa~rg- 311 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG-----SQLAHGFTAAVRSAACRG- 311 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc-----cchhhhhhHHHHHHHhcc-
Confidence 99999877 888889999999999999999999999888777776553222211 122222222222222222
Q ss_pred hhHHHH------------HHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhc
Q 005881 360 YGEAIE------------LLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKC 427 (672)
Q Consensus 360 ~~~A~~------------~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (672)
..|.+ .+.+..-.|+......|....... ..|.-+...++...+.......+. .-+++|
T Consensus 312 -~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~-hQgk~e~veqlvg~l~npt~r~s~----~~V~a~--- 382 (1088)
T KOG4318|consen 312 -LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLR-HQGKGEEVEQLVGQLLNPTLRDSG----QNVDAF--- 382 (1088)
T ss_pred -cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHH-HcCCCchHHHHHhhhcCCccccCc----chHHHH---
Confidence 22222 222222234433333343333222 255555666665555433222111 111111
Q ss_pred CCHHHHHHHHhhCCCCCchhHHHHHHHHHh---cCChHHHHHHHHHH------------HH----CCCCC-------CHH
Q 005881 428 GRLNDARKVFDHLSSKNLVSWNTMLVGYAQ---HGLGREALEIYSMM------------QE----NKIKP-------NDN 481 (672)
Q Consensus 428 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m------------~~----~g~~p-------~~~ 481 (672)
-+.+..+|.++..+....-.....+... ..+..+..++.... .. .-..| =..
T Consensus 383 --~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~ird 460 (1088)
T KOG4318|consen 383 --GALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRD 460 (1088)
T ss_pred --HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHH
Confidence 1123344444443322211111112111 11122222222211 10 00111 001
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhCC-----CCCCHHHHHHHHH
Q 005881 482 TFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSSP-----IEPNKVVWRCLLS 556 (672)
Q Consensus 482 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~ 556 (672)
.-+.++..|++.-+..++...-+... +.-+ | ..|..|++.+......++|..+.++.. ..-|..-+..+.+
T Consensus 461 i~~ql~l~l~se~n~lK~l~~~ekye-~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~d 536 (1088)
T KOG4318|consen 461 IANQLHLTLNSEYNKLKILCDEEKYE-DLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQD 536 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHH
Confidence 23345555666556666665443332 2222 2 678899999999999999999988764 2224455677888
Q ss_pred HHHhcCCHHHHHHHHHHHhc---CCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCCceeEE
Q 005881 557 GCKTHKDLVLGRYAAEKILS---TDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKSLKKDTGCSWT 622 (672)
Q Consensus 557 ~~~~~g~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 622 (672)
...+.+....+..+.+...+ ..|........+.+-.+..|+.+...++.+-+...|+.. .|.-|.
T Consensus 537 LL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~~ 604 (1088)
T KOG4318|consen 537 LLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLWM 604 (1088)
T ss_pred HHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccceE
Confidence 88888888888888877654 344445556677777888999999999999888888765 466563
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.69 E-value=5.4e-11 Score=116.11 Aligned_cols=508 Identities=13% Similarity=0.083 Sum_probs=391.8
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhhccCC-
Q 005881 61 LNYFRLMVCCVLEPNYYTYVGAVSACASRGDARSGKEIHGRMYRSGLELNSHVSNCLINMYGKCGLLSSAQFVFDASLE- 139 (672)
Q Consensus 61 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~- 139 (672)
.+++++.++. + |+.+ .|-++.....+.+.|.-++....+.- +.+.. |.-+|++..-++.|..+++...+
T Consensus 366 ~RVlRKALe~-i-P~sv---~LWKaAVelE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~ 435 (913)
T KOG0495|consen 366 KRVLRKALEH-I-PRSV---RLWKAAVELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREI 435 (913)
T ss_pred HHHHHHHHHh-C-CchH---HHHHHHHhccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555553 2 3332 23344445566667888888777653 22333 34456666678888888876544
Q ss_pred --CCcccHHHHHHHHHhcCChHHHHHHHHH----HHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCC--c
Q 005881 140 --RNSISWVSLLSSYCQCGEHVHGLKIFLL----SRKSGVAISEFSCASVLGACAVLGNLKVGMQIHSLVFKCALEF--D 211 (672)
Q Consensus 140 --~~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~ 211 (672)
.+...|.+-...--.+|+.+...+++.+ +...|+..+...|..=..+|-..|..-.+..+....+.-|++. -
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~ 515 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDR 515 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchh
Confidence 4777888877777788988888877654 5567999999999999999999999999999999999888764 3
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 005881 212 KFVAMGLINLYAKCEKLDLASRVFSNIQL---PDLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAF 288 (672)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 288 (672)
..+|..-...+.+.+.++-|+.+|....+ .+...|......--..|..++-..+|++....- +-....+.......
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEK 594 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHH
Confidence 56788888889999999999999987764 345667777766667899999999999998862 22333344444556
Q ss_pred hccCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCCC--CCcccHHHHHHHHHhcCChhHHHHH
Q 005881 289 ADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMDE--HDVVSWNALIAGHLASCHYGEAIEL 366 (672)
Q Consensus 289 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~ 366 (672)
-..|++..|..++..+.+.... +..++-.-+..-....+++.|+.+|.+... +....|.--+...--.+..++|+++
T Consensus 595 w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 6789999999999999887643 778888889999999999999999998875 5666776666666678899999999
Q ss_pred HHHHHhCCCCCChH-HHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCC---C
Q 005881 367 LKDMLFEGHCPNLY-TYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLS---S 442 (672)
Q Consensus 367 ~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~ 442 (672)
+++.++. -|+-. .|..+-..+-+.++++.|+..|..-.+. ++..+..|-.|...--+.|.+-.|+.+|++.. .
T Consensus 674 lEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP 750 (913)
T KOG0495|consen 674 LEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP 750 (913)
T ss_pred HHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence 9998875 56544 5566666778888888888877655443 34466778888888888999999999999887 3
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHH
Q 005881 443 KNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASV 522 (672)
Q Consensus 443 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 522 (672)
.|...|-..|..-.+.|+.+.|..+..+.++. .+-+...|..-|...-+.++-......+++ ..-|+.+...+
T Consensus 751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk------ce~dphVllai 823 (913)
T KOG0495|consen 751 KNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK------CEHDPHVLLAI 823 (913)
T ss_pred CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh------ccCCchhHHHH
Confidence 56679999999999999999999999998886 455557788888877777776666665543 35577888899
Q ss_pred HHHhhccCChHHHHHHHHh-CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHH
Q 005881 523 VHLFACRGQTRRAYEFIKS-SPIEPN-KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSN 590 (672)
Q Consensus 523 ~~~~~~~g~~~~A~~~~~~-~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 590 (672)
...+-...+++.|.+.|.+ ....|| ..+|.-+...+.++|.-++-..++.+...-+|.+-..|.....
T Consensus 824 a~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 824 AKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 9999999999999999976 455664 5588889999999999999999999999999988777765543
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.61 E-value=1.6e-15 Score=145.29 Aligned_cols=254 Identities=15% Similarity=0.135 Sum_probs=110.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHH-HHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCC
Q 005881 351 IAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNI-LNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGR 429 (672)
Q Consensus 351 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 429 (672)
...+.+.|++++|++++++.......|+...|-.+ ...+...++.+.|...++.+...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 33444556666666666444333223333333332 23344455666666666666554322 44455666666 67888
Q ss_pred HHHHHHHHhhCC--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhccCcHHHHHHHHHHh
Q 005881 430 LNDARKVFDHLS--SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENK-IKPNDNTFIGVLSACVHIGLVEEGWHYFNSM 506 (672)
Q Consensus 430 ~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 506 (672)
+++|.+++.... .+++..+..++..+...++++++.+++++..... .+++...|..+...+.+.|+.++|.+.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999988887764 3566677888888999999999999999987643 3455567888888899999999999999998
Q ss_pred HHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 005881 507 IRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSSP--IEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTS 583 (672)
Q Consensus 507 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 583 (672)
.+ ..| +......++..+...|+.+++.++++... ...|+..|..+..++...|+.++|...++++++.+|+|+.
T Consensus 173 l~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 84 366 57888899999999999999777776431 1235567888999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHh
Q 005881 584 AHIMLSNVYAEANMWDETAKVRKIMK 609 (672)
Q Consensus 584 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 609 (672)
....+++++...|+.++|.+++++..
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999998764
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.1e-11 Score=116.07 Aligned_cols=360 Identities=16% Similarity=0.153 Sum_probs=229.0
Q ss_pred CCCcHHHHHHHHHHhhcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHH--HH
Q 005881 208 LEFDKFVAMGLINLYAKCEKLDLASRVFSNIQLPDLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSY--VL 285 (672)
Q Consensus 208 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~--ll 285 (672)
...|.+.+-...-.+.+.|..+.|...|......-+..|.+.+....-.-+.+.+..+ . .|...|...+.. +.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l----~-~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSIL----V-VGLPSDMHWMKKFFLK 234 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHH----H-hcCcccchHHHHHHHH
Confidence 3344443333333445667777787777766543344444443322222222222111 1 122222222211 22
Q ss_pred HHhhccCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHH
Q 005881 286 GAFADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMDEHDVVSWNALIAGHLASCHYGEAIE 365 (672)
Q Consensus 286 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 365 (672)
.++....+.+++.+-.+.....|++.+...-+....+.-...+++.|+.+|+++.+.|+.-
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYR------------------- 295 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYR------------------- 295 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc-------------------
Confidence 3444444555555555555666665555544444444444445555555555444322110
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-
Q 005881 366 LLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSKN- 444 (672)
Q Consensus 366 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 444 (672)
--|..+|+.++-.-.....+.---+.. ..-..++ +.|...+.+-|+-.++-+.|...|++..+.|
T Consensus 296 ----------l~dmdlySN~LYv~~~~skLs~LA~~v--~~idKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp 361 (559)
T KOG1155|consen 296 ----------LDDMDLYSNVLYVKNDKSKLSYLAQNV--SNIDKYR--PETCCIIANYYSLRSEHEKAVMYFKRALKLNP 361 (559)
T ss_pred ----------chhHHHHhHHHHHHhhhHHHHHHHHHH--HHhccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHhcCc
Confidence 013344444442222111111000000 0111223 3445667788888899999999999988544
Q ss_pred --chhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHH
Q 005881 445 --LVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIAS 521 (672)
Q Consensus 445 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 521 (672)
...|+.|..-|...++...|++-+++.++-. +.|...|-.|.++|.-.+.+.=|+-+|++.. ...| |...|.+
T Consensus 362 ~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~a 437 (559)
T KOG1155|consen 362 KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVA 437 (559)
T ss_pred chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHH
Confidence 4589999999999999999999999999942 4455789999999999999999999999876 6677 7899999
Q ss_pred HHHHhhccCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-------CCCCCCchHHHHHHHH
Q 005881 522 VVHLFACRGQTRRAYEFIKSS--PIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILS-------TDPEDTSAHIMLSNVY 592 (672)
Q Consensus 522 l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~ 592 (672)
|+++|.+.++.++|.+.|++. ..+.+...+..|...+.+.++.++|.+.|++-++ .+|+...+..-|+.-+
T Consensus 438 LG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f 517 (559)
T KOG1155|consen 438 LGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYF 517 (559)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 999999999999999999874 2234567888999999999999999999999887 4454555666788889
Q ss_pred HhcCChHHHHHHHHHHh
Q 005881 593 AEANMWDETAKVRKIMK 609 (672)
Q Consensus 593 ~~~g~~~~a~~~~~~~~ 609 (672)
.+.+++++|........
T Consensus 518 ~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 518 KKMKDFDEASYYATLVL 534 (559)
T ss_pred HhhcchHHHHHHHHHHh
Confidence 99999999999877654
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=8.5e-10 Score=103.85 Aligned_cols=492 Identities=12% Similarity=0.078 Sum_probs=343.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHhhccCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh-hHHHHHH
Q 005881 110 NSHVSNCLINMYGKCGLLSSAQFVFDASLE---RNSISWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEF-SCASVLG 185 (672)
Q Consensus 110 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~ 185 (672)
+...|-....-=...+++..|..+|++... ++...|--.+..-.++.....|..+++..... -|... .|-..+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHH
Confidence 344444444444456778888888887654 46667877888888888999999999888764 33322 3333343
Q ss_pred HHhccCChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHHHhcCC--CCCcchHHHHHHHHHhcCChhHHH
Q 005881 186 ACAVLGNLKVGMQIHSLVFKCALEFDKFVAMGLINLYAKCEKLDLASRVFSNIQ--LPDLTAWSALIGGYAQLGKACEAI 263 (672)
Q Consensus 186 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~ 263 (672)
.=-..|++..|.++|..-.. -.|+...|.+.|+.=.+...++.|..+++... .|++..|--....=-+.|+...+.
T Consensus 150 mEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHH
Confidence 44567889999999988765 47889999999999999999999999998865 588888888888778889999888
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHh----hccCCchhHHHHHHHHHHhCCCC-chHHHHHHHHHHHccCChHHHHHHH--
Q 005881 264 DLFVKMFSSGLMPSEVTFSYVLGAF----ADVKETIGGRQLHSLIIKMGFSS-FTFVANTVLDFYSKCELLEESLKTF-- 336 (672)
Q Consensus 264 ~~~~~m~~~~~~p~~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~-- 336 (672)
.+|....+. --|...-..+..++ .+...++.|.-++...++.-... ....|..+...=-+-|+........
T Consensus 228 ~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 228 SVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 888877653 12233333333333 45677888888888888763322 2445555555555566644433332
Q ss_pred ------hhCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChH--HHHH---H-HH-HH---cCcCchHH
Q 005881 337 ------DEMDEH---DVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLY--TYSN---I-LN-IS---SDIPAIEW 397 (672)
Q Consensus 337 ------~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--t~~~---l-l~-~~---~~~~~~~~ 397 (672)
+.+... |-.+|-..+..--..|+.+...++|++.+.. ++|-.. .+.. | |+ +| ....+++.
T Consensus 306 KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 306 KRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 222222 4456777777777889999999999999875 455221 1111 1 11 22 35788999
Q ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHH----hcCCHHHHHHHHhhCC--CCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 005881 398 GKQTHCCIVKPGFDSNVVIGSALVDMYA----KCGRLNDARKVFDHLS--SKNLVSWNTMLVGYAQHGLGREALEIYSMM 471 (672)
Q Consensus 398 a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 471 (672)
++++++..++ =++....++.-+--+|+ ++.++..|.+++.... -|-..++...|..-.+.++++.+..+|++.
T Consensus 385 tr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 385 TRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999988 34556666666555554 6789999999998876 477778888888889999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhC-CCCCCHHH
Q 005881 472 QENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSS-PIEPNKVV 550 (672)
Q Consensus 472 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 550 (672)
++-+ +-|..+|......-...|+.+.|..+|+-++....+....-.|.+.|+.=...|.++.|..+++++ .-.+-..+
T Consensus 464 le~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kv 542 (677)
T KOG1915|consen 464 LEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKV 542 (677)
T ss_pred HhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchH
Confidence 9953 334468888888888899999999999988754333333456777788878999999999999874 33455557
Q ss_pred HHHHHHHHH-----hcC-----------CHHHHHHHHHHHhc----CCCCCC--chHHHHHHHHHhcCChHHHHHHHHHH
Q 005881 551 WRCLLSGCK-----THK-----------DLVLGRYAAEKILS----TDPEDT--SAHIMLSNVYAEANMWDETAKVRKIM 608 (672)
Q Consensus 551 ~~~l~~~~~-----~~g-----------~~~~a~~~~~~~~~----~~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~ 608 (672)
|-++...-. +.+ +...|..+|+++.. .+|... ..+...-++-...|...+...+-.+|
T Consensus 543 WisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~m 622 (677)
T KOG1915|consen 543 WISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKM 622 (677)
T ss_pred HHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhc
Confidence 877765533 334 56788999998864 334221 22334445556677777777777777
Q ss_pred hh
Q 005881 609 KE 610 (672)
Q Consensus 609 ~~ 610 (672)
++
T Consensus 623 Pk 624 (677)
T KOG1915|consen 623 PK 624 (677)
T ss_pred cH
Confidence 64
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.55 E-value=2.2e-11 Score=113.52 Aligned_cols=435 Identities=12% Similarity=0.062 Sum_probs=258.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHH-HHHHHhccCChHHHHHHHHHHHHhcCCCcHHH----HHHHHHHhh
Q 005881 149 LSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCAS-VLGACAVLGNLKVGMQIHSLVFKCALEFDKFV----AMGLINLYA 223 (672)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~li~~~~ 223 (672)
..-|.-+....+|+..|+-..+...-|+.-.... +-..+.+.+.+.+|...++..+..-+..+..+ .+.+--.+.
T Consensus 208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi 287 (840)
T KOG2003|consen 208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI 287 (840)
T ss_pred HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence 3445555667777777777777666666543322 22234455666777777766665433322222 222223445
Q ss_pred cCCChhHHHHHHhcCCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCchhHHHHH
Q 005881 224 KCEKLDLASRVFSNIQL--PDLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVKETIGGRQLH 301 (672)
Q Consensus 224 ~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 301 (672)
+.|+++.|..-|+...+ ||..+--.++-++...|+-++..+.|.+|..--..||..-|- +.
T Consensus 288 q~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi-------~~---------- 350 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI-------KE---------- 350 (840)
T ss_pred ecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc-------CC----------
Confidence 56666666666655442 444433333333444555555566666665443333332220 00
Q ss_pred HHHHHhCCCCchHHHHHHHH-----HHHccC--ChHH----HHHHHhhCCCCCccc---HH------------------H
Q 005881 302 SLIIKMGFSSFTFVANTVLD-----FYSKCE--LLEE----SLKTFDEMDEHDVVS---WN------------------A 349 (672)
Q Consensus 302 ~~~~~~~~~~~~~~~~~li~-----~~~~~~--~~~~----a~~~~~~~~~~~~~~---~~------------------~ 349 (672)
.-.|+....|..+. -.-+.+ +.++ +.+++.-+..|+... |. .
T Consensus 351 ------~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ 424 (840)
T KOG2003|consen 351 ------KDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEIN 424 (840)
T ss_pred ------cCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhh
Confidence 01122222222111 111111 1111 112222222222110 10 1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChHHH--HHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhc
Q 005881 350 LIAGHLASCHYGEAIELLKDMLFEGHCPNLYTY--SNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKC 427 (672)
Q Consensus 350 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (672)
-..-|.++|+++.|+++++-+.+..-+.-...- .+.+.......++..|.++-+......-- +......-.+.-...
T Consensus 425 ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~n 503 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFAN 503 (840)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeec
Confidence 123478899999999999988765433322222 22333333455677777776665543210 111111111223346
Q ss_pred CCHHHHHHHHhhCCCCCchhHHHH---HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHH
Q 005881 428 GRLNDARKVFDHLSSKNLVSWNTM---LVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFN 504 (672)
Q Consensus 428 g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 504 (672)
|++++|.+.+.+....|..+-.+| ...+-..|+.++|++.|-++..- +.-+......+...|-...+..+|++++.
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 999999999999998877654444 34567889999999999887653 23344566677788888899999999987
Q ss_pred HhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHH-HhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 005881 505 SMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFI-KSSPIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPED 581 (672)
Q Consensus 505 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 581 (672)
... .+.| |+..++.|.++|-+.|+...|.+.. +....-| +..+..-|...|....-.+.++..|+++--+.|+.
T Consensus 583 q~~---slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~ 659 (840)
T KOG2003|consen 583 QAN---SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ 659 (840)
T ss_pred Hhc---ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH
Confidence 654 5555 7899999999999999999999885 4433333 45555556666777777899999999999999976
Q ss_pred CchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 005881 582 TSAHIMLSNVYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 611 (672)
......++.++.+.|+++.|.++++....+
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 666667888899999999999999988653
No 40
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2.1e-11 Score=115.01 Aligned_cols=211 Identities=14% Similarity=0.087 Sum_probs=149.1
Q ss_pred CchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChHHHHHHHH
Q 005881 393 PAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLS---SKNLVSWNTMLVGYAQHGLGREALEIYS 469 (672)
Q Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 469 (672)
|+.-.+.+-++..++....+. ..|--+..+|....+.++-...|+... ..|+.+|..-...+.-.+++++|..=|+
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred CCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444332221 113444555777777777777777665 3445566666666666677888888888
Q ss_pred HHHHCCCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHh-CCCCCC
Q 005881 470 MMQENKIKPND-NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKS-SPIEPN 547 (672)
Q Consensus 470 ~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~ 547 (672)
+.+. +.|+. ..|..+.-+..+.+.++++...|++..++ ++--+++|+.....+..+++++.|.+.++. +.+.|.
T Consensus 419 Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 419 KAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 8877 55655 46777777777888888888888888754 344568888888888888888888888875 334443
Q ss_pred ---------HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 005881 548 ---------KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMK 609 (672)
Q Consensus 548 ---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 609 (672)
+.+-..++- .+-.+|+..|..+++++++++|...-+|..|+.+-.+.|+.++|+++|++..
T Consensus 495 ~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 222223332 3345999999999999999999999999999999999999999999999764
No 41
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=6.5e-11 Score=113.97 Aligned_cols=196 Identities=13% Similarity=0.107 Sum_probs=155.8
Q ss_pred CCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005881 411 DSNVVIGSALVDMYAKCGRLNDARKVFDHLSSKNL---VSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVL 487 (672)
Q Consensus 411 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 487 (672)
+....+|-++.--|.-.|+.++|++.|.+...-|. ..|-.+..+|+-.|..+.|+..+...-+. ++-....+..+.
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlg 387 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLG 387 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHH
Confidence 33556667777777778999999999988775443 48888999999999999999988887664 333344555666
Q ss_pred HHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC--------CCCC-CHHHHHHHHHH
Q 005881 488 SACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS--------PIEP-NKVVWRCLLSG 557 (672)
Q Consensus 488 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p-~~~~~~~l~~~ 557 (672)
--|.+.++.+.|.++|.... ++.| |+-+++-++-+.-..+.+.+|..+|+.. +.++ =..+++.|..+
T Consensus 388 mey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA 464 (611)
T ss_pred HHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence 67888899999999998776 7777 6677777777777888899998888642 1111 23356778888
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 558 CKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 558 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
|++.+.+++|+..+++++.+.|.++.+|..++-+|...|+++.|.+.|.+...
T Consensus 465 ~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 465 YRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998754
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=7.5e-13 Score=129.82 Aligned_cols=275 Identities=12% Similarity=0.077 Sum_probs=212.2
Q ss_pred ChHHHHHHHhhCCC--CCcc-cHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCChHHHHHHHHHHcCcCchHHHHHHH
Q 005881 328 LLEESLKTFDEMDE--HDVV-SWNALIAGHLASCHYGEAIELLKDMLFEGH--CPNLYTYSNILNISSDIPAIEWGKQTH 402 (672)
Q Consensus 328 ~~~~a~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~ 402 (672)
+..+|...|..+++ +|+. ....+..+|...+++++|.++|+...+... .-+...|++.+--+-+. .+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 45678888888655 3443 234456788888999999999998876521 12455666665433221 111122
Q ss_pred H-HHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---chhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 005881 403 C-CIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSKN---LVSWNTMLVGYAQHGLGREALEIYSMMQENKIKP 478 (672)
Q Consensus 403 ~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 478 (672)
. .+++ .-+..+.+|.++.++|.-+++.+.|++.|++..+.| ..+|+.+..-+.....+|+|...|+..+. +.|
T Consensus 410 aq~Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 2 2222 224578899999999999999999999999988544 46888888888999999999999999877 566
Q ss_pred CH-HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 005881 479 ND-NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCL 554 (672)
Q Consensus 479 ~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 554 (672)
+. ..|..+...|.+.++++.|.-.|+++. .+.| +......++..+-+.|+.++|++++++. ..+| |+..--.-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 66 478889999999999999999999887 7788 4567778888999999999999999874 3445 55555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 005881 555 LSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKS 612 (672)
Q Consensus 555 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 612 (672)
+..+...+++++|++.+|++.++-|++...+..++.+|.+.|+.+.|..-|.-+.+.+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 6667788999999999999999999999999999999999999999999888776533
No 43
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=1.1e-10 Score=109.77 Aligned_cols=415 Identities=11% Similarity=0.056 Sum_probs=292.0
Q ss_pred cCCChhHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCchhHHHH
Q 005881 224 KCEKLDLASRVFSNIQL---PDLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVKETIGGRQL 300 (672)
Q Consensus 224 ~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 300 (672)
..+++..|..+|+.... .++..|--.+..=.++..+..|..+++.....=...|..-| .-+..--..|+...|.++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHHH
Confidence 34566777777777653 45566666677777778888888888877654222233222 223333456888888888
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCC--CCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 005881 301 HSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMD--EHDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPN 378 (672)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 378 (672)
|+.-.+ ..|+...+++.|+.=.+-+.++.|..++++.. .|++.+|--...--.++|+...|..+|...++. -.|
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~ 239 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGD 239 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhh
Confidence 887765 47888999999999888899999999998865 488888877777778889888888888887764 223
Q ss_pred hHHHHHHHHHH----cCcCchHHHHHHHHHHHhcCCCC-cccHHHHHHHHHHhcCCHHHHHHH--------HhhCCCC--
Q 005881 379 LYTYSNILNIS----SDIPAIEWGKQTHCCIVKPGFDS-NVVIGSALVDMYAKCGRLNDARKV--------FDHLSSK-- 443 (672)
Q Consensus 379 ~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~--------~~~~~~~-- 443 (672)
...-..++.++ .+...++.|..+++..+..-... ....|..+...=-+-|+....... ++.+.+.
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 33333333333 35667888888888887653222 233444444433344554333322 2222233
Q ss_pred -CchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHh---hccCcHHHHHHHHHHhHHhhCC
Q 005881 444 -NLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDN-------TFIGVLSAC---VHIGLVEEGWHYFNSMIRDHGI 512 (672)
Q Consensus 444 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------~~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~ 512 (672)
|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|.-+--+| ....+++.+.++|+... .+
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l---~l 395 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL---DL 395 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---hh
Confidence 4457877888888889999999999999986 666432 222222222 45788999999999887 35
Q ss_pred CC-chHHHH----HHHHHhhccCChHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHH
Q 005881 513 SP-RMDHIA----SVVHLFACRGQTRRAYEFIK-SSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHI 586 (672)
Q Consensus 513 ~p-~~~~~~----~l~~~~~~~g~~~~A~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 586 (672)
-| ..-++. .......|+.++..|.+++- .+|.-|....+...+..-.+.++++....+|++-++-.|.+..+|.
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ 475 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWS 475 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHH
Confidence 55 334444 34444568999999999985 5788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCccCCceeEEEeCCEEEEEEeccccCCChHHHHHHHHHH
Q 005881 587 MLSNVYAEANMWDETAKVRKIMKEKSLKKDTGCSWTELQNKMHYFSTSRFAQFQGIDLHEVMNQL 651 (672)
Q Consensus 587 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 651 (672)
..+.+-...|+++.|..+|+...+......|...| .....|.....-+..++.+|+.|...
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw----kaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLW----KAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH----HHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 99999999999999999999998877666676667 22334444445566666677665543
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=2.2e-12 Score=126.56 Aligned_cols=247 Identities=11% Similarity=0.085 Sum_probs=193.2
Q ss_pred ChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCC--CCcccHHHHHHHHHHhcCCHHHHHHH
Q 005881 359 HYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGF--DSNVVIGSALVDMYAKCGRLNDARKV 436 (672)
Q Consensus 359 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 436 (672)
+..+|+..|...... +.-+......+-.+|...++++++..+|+.+.+... .-+..+|++.+--+-+.=.+..--+-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 467899999994443 334446667778899999999999999999987532 23667777776444332112111122
Q ss_pred HhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCc
Q 005881 437 FDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKP-NDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPR 515 (672)
Q Consensus 437 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 515 (672)
+-...+..+.+|.++..+|.-+++.+.|++.|++.++ +.| ...+|..+..-+.....+|.|...|+..+ ++.|.
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~~~r 487 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GVDPR 487 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cCCch
Confidence 2223345678999999999999999999999999999 677 45788888888888999999999998776 44442
Q ss_pred -hHHHHHHHHHhhccCChHHHHHHHHh-CCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 005881 516 -MDHIASVVHLFACRGQTRRAYEFIKS-SPIEPNKV-VWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVY 592 (672)
Q Consensus 516 -~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 592 (672)
-..|-.|+-.|.++++++.|.-.|++ ..+.|... ....+...+.+.|+.++|++++++++.++|.|+-.-+..+.++
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL 567 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 23444567789999999999999976 57888555 4455566688899999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHhhC
Q 005881 593 AEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 593 ~~~g~~~~a~~~~~~~~~~ 611 (672)
...+++++|.+.++++++-
T Consensus 568 ~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKEL 586 (638)
T ss_pred HhhcchHHHHHHHHHHHHh
Confidence 9999999999999999863
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.52 E-value=1.5e-11 Score=123.36 Aligned_cols=275 Identities=7% Similarity=0.001 Sum_probs=170.3
Q ss_pred cCChHHHHHHHhhCCCC--Cccc-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHH--HHHHHHcCcCchHHHHH
Q 005881 326 CELLEESLKTFDEMDEH--DVVS-WNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYS--NILNISSDIPAIEWGKQ 400 (672)
Q Consensus 326 ~~~~~~a~~~~~~~~~~--~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~ 400 (672)
.|+++.|.+.+....+. ++.. |-.......+.|+++.|.+.+.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 46666666655554432 1111 211222335666666666666666543 44443222 22345556666666666
Q ss_pred HHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCCCc---h--------hHHHHHHHHHhcCChHHHHHHHH
Q 005881 401 THCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSKNL---V--------SWNTMLVGYAQHGLGREALEIYS 469 (672)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~--------~~~~li~~~~~~g~~~~A~~~~~ 469 (672)
.++.+.+.. +.++.....+...|.+.|++++|.+++..+.+... . +|..++.......+.+...++|+
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 666666554 22455566677777777777777777776663211 1 22333333334445556666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-C
Q 005881 470 MMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-N 547 (672)
Q Consensus 470 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~ 547 (672)
..... .+.+......+..++...|+.++|...+++..+ ..|+..... +.+....++.+++++.+++. ...| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~~--l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLVL--LIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHH--HHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 65443 344566777788888888888888888877763 345553322 22333457888888877653 3455 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 548 KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
+..+..+...|...+++++|+..|+++++..|+ ...+..++.++.+.|+.++|.+.+++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445667778888899999999999999999884 46677889999999999999888886643
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.2e-10 Score=107.58 Aligned_cols=254 Identities=11% Similarity=0.094 Sum_probs=199.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCC--CCcccHHHHHHHHHHhcCC
Q 005881 352 AGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGF--DSNVVIGSALVDMYAKCGR 429 (672)
Q Consensus 352 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 429 (672)
.++....+.++++.-.......|..-+...-+..-.+.....++++|..+|+.+.+... -.|..+|+.++-.-..+.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 45555567778888777777777665555555555556678899999999999988743 1256677666533322223
Q ss_pred HHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHHHHHHHHHhHH
Q 005881 430 LNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDN-TFIGVLSACVHIGLVEEGWHYFNSMIR 508 (672)
Q Consensus 430 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~ 508 (672)
+.--....-.+.+--+.|...+..-|+-.++.++|...|++.++ +.|... .|..+..-|....+...|++.++.++
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv- 391 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV- 391 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH-
Confidence 32222222233344455667777888889999999999999999 567664 67777788999999999999999988
Q ss_pred hhCCCC-chHHHHHHHHHhhccCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchH
Q 005881 509 DHGISP-RMDHIASVVHLFACRGQTRRAYEFIKS-SPIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAH 585 (672)
Q Consensus 509 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 585 (672)
.+.| |-..|-.|+.+|.-.+...=|+=+|++ ...+| |...|.+|...|.+.++.++|+..|.+++..+-.+..++
T Consensus 392 --di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 392 --DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred --hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 6677 779999999999999999999999986 45778 777999999999999999999999999999988888999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 586 IMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 586 ~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
..|+++|.+.++.++|.+.+++-.+
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999987765
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.51 E-value=1.9e-11 Score=122.50 Aligned_cols=287 Identities=9% Similarity=-0.023 Sum_probs=186.3
Q ss_pred cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHH
Q 005881 256 LGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKT 335 (672)
Q Consensus 256 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 335 (672)
.|+++.|.+.+....+..-.| ...|.....+....|+.+.+.+.+..+.+....+...........+...|+++.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 466666665555443321111 1122222333355666666666666655432222212222335566777777777777
Q ss_pred HhhCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCC
Q 005881 336 FDEMDE---HDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDS 412 (672)
Q Consensus 336 ~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 412 (672)
++++.+ .++.....+...|.+.|++++|.+++..+.+.+..++. .+..+-
T Consensus 176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~-------------------------- 228 (398)
T PRK10747 176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE-------------------------- 228 (398)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH--------------------------
Confidence 777665 24455666777788888888888888888776544221 111000
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005881 413 NVVIGSALVDMYAKCGRLNDARKVFDHLS---SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSA 489 (672)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 489 (672)
...+..++.......+.+...++++.+. ..++.....+...+...|+.++|.+++++..+. +||.... ++.+
T Consensus 229 -~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~ 303 (398)
T PRK10747 229 -QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIP 303 (398)
T ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHh
Confidence 0011222333333445666677777665 356677888889999999999999999998884 5555322 2334
Q ss_pred hhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005881 490 CVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKS-SPIEPNKVVWRCLLSGCKTHKDLVLG 567 (672)
Q Consensus 490 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a 567 (672)
....++.+++....+...+. .| |+..+.++..++.+.|++++|.+.|++ +...|+...+..+...+.+.|+.++|
T Consensus 304 ~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 304 RLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEA 380 (398)
T ss_pred hccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 44568999999999888743 45 567788999999999999999999986 45779998888889999999999999
Q ss_pred HHHHHHHhcCC
Q 005881 568 RYAAEKILSTD 578 (672)
Q Consensus 568 ~~~~~~~~~~~ 578 (672)
.+++++.+.+.
T Consensus 381 ~~~~~~~l~~~ 391 (398)
T PRK10747 381 AAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHhhh
Confidence 99999998764
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.47 E-value=1.4e-10 Score=116.99 Aligned_cols=288 Identities=10% Similarity=-0.009 Sum_probs=143.8
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhh-HHHHHHHhhccCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHH
Q 005881 255 QLGKACEAIDLFVKMFSSGLMPSEVT-FSYVLGAFADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESL 333 (672)
Q Consensus 255 ~~~~~~~a~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 333 (672)
..|+++.|.+.+.+..+. .|+... +-....+....|+.+.+.+.+..+.+....+...+.......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 467777777777665543 343322 22333445566666666666666654432222223333456666667777777
Q ss_pred HHHhhCCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCC
Q 005881 334 KTFDEMDE--H-DVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGF 410 (672)
Q Consensus 334 ~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 410 (672)
..++.+.+ | +...+..+...+.+.|++++|.+++..+.+.+..+.. .+..+-.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~~----------------------- 229 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLEQ----------------------- 229 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-----------------------
Confidence 77666654 2 3445556666677777777777777777666532211 1110000
Q ss_pred CCcccHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH---H
Q 005881 411 DSNVVIGSALVDMYAKCGRLNDARKVFDHLSS---KNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTF---I 484 (672)
Q Consensus 411 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~ 484 (672)
..+..++..-......+...+.++.... .++..+..+...+...|+.++|.+++++..+. .||.... .
T Consensus 230 ----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~ 303 (409)
T TIGR00540 230 ----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPL 303 (409)
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHH
Confidence 0011111111112233444455555542 46677777888888888888888888888885 4444321 1
Q ss_pred HHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHH---hCCCCCCHHHHHHHHHHHHhc
Q 005881 485 GVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIK---SSPIEPNKVVWRCLLSGCKTH 561 (672)
Q Consensus 485 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~---~~~~~p~~~~~~~l~~~~~~~ 561 (672)
.........++.+.+.+.++...+...-.|+.....+++..+.+.|++++|.+.|+ .....|+...+..+...+.+.
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~ 383 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA 383 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc
Confidence 11111223355555555555544221111111333344444444444444444444 122334444444444444444
Q ss_pred CCHHHHHHHHHHH
Q 005881 562 KDLVLGRYAAEKI 574 (672)
Q Consensus 562 g~~~~a~~~~~~~ 574 (672)
|+.++|.++++++
T Consensus 384 g~~~~A~~~~~~~ 396 (409)
T TIGR00540 384 GDKAEAAAMRQDS 396 (409)
T ss_pred CCHHHHHHHHHHH
Confidence 4444444444443
No 49
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.45 E-value=3.6e-08 Score=96.76 Aligned_cols=516 Identities=11% Similarity=0.097 Sum_probs=283.4
Q ss_pred cHHHHHHHHhcCCChhhHHHHHHHHHHh-CCCCChhHHHHHHHHHHhcCChHHHHHHhhccCCCCcccHHHHHHHHHhcC
Q 005881 78 TYVGAVSACASRGDARSGKEIHGRMYRS-GLELNSHVSNCLINMYGKCGLLSSAQFVFDASLERNSISWVSLLSSYCQCG 156 (672)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 156 (672)
.|..-+..+..+|++......|+..+.. .+.-...+|...+......|-.+-+.+++++..+-++..-+-.|..++..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d 183 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSD 183 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 3444444455555555555555555543 122233455555555555555566666666555545455555566666666
Q ss_pred ChHHHHHHHHHHHhCC------CCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhcC--CCc--HHHHHHHHHHhhcCC
Q 005881 157 EHVHGLKIFLLSRKSG------VAISEFSCASVLGACAVLGNLKVGMQIHSLVFKCAL--EFD--KFVAMGLINLYAKCE 226 (672)
Q Consensus 157 ~~~~a~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~--~~~~~~li~~~~~~g 226 (672)
++++|-+.+....... -+.+...|..+-...++..+.-....+ +.+++.|+ -+| ...|.+|.+-|.+.|
T Consensus 184 ~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 184 RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhh
Confidence 6666666655544321 122223333333333333322222211 11222222 122 456777788888888
Q ss_pred ChhHHHHHHhcCCC--CCcchHHHHHHHHHhc----------------C------ChhHHHHHHHHHHHCCC--------
Q 005881 227 KLDLASRVFSNIQL--PDLTAWSALIGGYAQL----------------G------KACEAIDLFVKMFSSGL-------- 274 (672)
Q Consensus 227 ~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~----------------~------~~~~a~~~~~~m~~~~~-------- 274 (672)
.+++|..++++... .++.-|..+.++|++- + +++-.+.-|+.+...+.
T Consensus 263 ~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlL 342 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLL 342 (835)
T ss_pred hhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 88888887776542 2233333333333321 1 12222333444333210
Q ss_pred CCChhhHHHHHH-HhhccCCchhHHHHHHHHHHhC-----CCCchHHHHHHHHHHHccCChHHHHHHHhhCCCCCcc---
Q 005881 275 MPSEVTFSYVLG-AFADVKETIGGRQLHSLIIKMG-----FSSFTFVANTVLDFYSKCELLEESLKTFDEMDEHDVV--- 345 (672)
Q Consensus 275 ~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--- 345 (672)
..|+.....-++ .-...|+..+....+.++++.- ...-...|-.+.+.|-..|+++.|+.+|++..+-+-.
T Consensus 343 RQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~ 422 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE 422 (835)
T ss_pred hcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence 111111111111 1122345555666666666531 1122346778899999999999999999998774333
Q ss_pred ----cHHHHHHHHHhcCChhHHHHHHHHHHhCCCC----------C-------ChHHHHHHHHHHcCcCchHHHHHHHHH
Q 005881 346 ----SWNALIAGHLASCHYGEAIELLKDMLFEGHC----------P-------NLYTYSNILNISSDIPAIEWGKQTHCC 404 (672)
Q Consensus 346 ----~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~----------p-------~~~t~~~ll~~~~~~~~~~~a~~~~~~ 404 (672)
+|..-...-.++.+++.|++++++....-.. | +...|+..+..--..|-++..+.+++.
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3444445556778899999988877542111 1 112344445555567788888899999
Q ss_pred HHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCch-hHHHHHHHHHhc---CChHHHHHHHHHHHHCCC
Q 005881 405 IVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLS----SKNLV-SWNTMLVGYAQH---GLGREALEIYSMMQENKI 476 (672)
Q Consensus 405 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~-~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~ 476 (672)
++...+.. +.+.-.....+-...-++++.+++++-. -|++. .|+..+.-+.+. ...+.|..+|++.++ |.
T Consensus 503 iidLriaT-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~C 580 (835)
T KOG2047|consen 503 IIDLRIAT-PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GC 580 (835)
T ss_pred HHHHhcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cC
Confidence 98876532 2222222333455667899999998865 25553 788777666542 378999999999999 67
Q ss_pred CCCHHHHHHHHHH--hhccCcHHHHHHHHHHhHHhhCCCCc--hHHHHHHHHH----hhc---cCChHHHHHHHHhCCCC
Q 005881 477 KPNDNTFIGVLSA--CVHIGLVEEGWHYFNSMIRDHGISPR--MDHIASVVHL----FAC---RGQTRRAYEFIKSSPIE 545 (672)
Q Consensus 477 ~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~----~~~---~g~~~~A~~~~~~~~~~ 545 (672)
+|...-+..|+-+ --+-|....|+.++++... ++++. .+.|+..+.- |+- .+-+++|++. -
T Consensus 581 pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~------L 652 (835)
T KOG2047|consen 581 PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES------L 652 (835)
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh------C
Confidence 8777544444333 2345888889999988653 44443 3556655442 211 1223333333 2
Q ss_pred CCHHHHHH---HHHHHHhcCCHHHHHHHHHHHhcCC-CC-CCchHHHHHHHHHhcCChHHHHHH
Q 005881 546 PNKVVWRC---LLSGCKTHKDLVLGRYAAEKILSTD-PE-DTSAHIMLSNVYAEANMWDETAKV 604 (672)
Q Consensus 546 p~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~~~~-p~-~~~~~~~l~~~~~~~g~~~~a~~~ 604 (672)
|+..+-.. ....-.+.|.++.|..+|...-++. |. ++..|...-..-.+.|+-+-..++
T Consensus 653 p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 653 PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 33332222 2223456788888888888777654 42 556666776677777774433333
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.42 E-value=2.6e-10 Score=115.08 Aligned_cols=279 Identities=9% Similarity=0.005 Sum_probs=173.7
Q ss_pred ccCChHHHHHHHhhCCC--CCcc-cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChH--HHHHHHHHHcCcCchHHHH
Q 005881 325 KCELLEESLKTFDEMDE--HDVV-SWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLY--TYSNILNISSDIPAIEWGK 399 (672)
Q Consensus 325 ~~~~~~~a~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~ 399 (672)
..|+++.|.+.+....+ |+.. .+-.......+.|+++.|.+.+.+..+. .|+.. ........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 35666666666655443 2211 1222234455556666666666666543 23332 2222344555666666666
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CchhHH----HHHHHHHhcCChHHHHHHHHHHH
Q 005881 400 QTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSK---NLVSWN----TMLVGYAQHGLGREALEIYSMMQ 472 (672)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~g~~~~A~~~~~~m~ 472 (672)
..++.+.+.. +-++.+...+...|...|++++|.+.+..+.+. +...+. ....+....+..+++.+.+..+.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6666666654 224455667777777777787777777776632 222221 11112223333333444555555
Q ss_pred HCC---CCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHH---HHHHHHHhhccCChHHHHHHHHh-CCCC
Q 005881 473 ENK---IKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDH---IASVVHLFACRGQTRRAYEFIKS-SPIE 545 (672)
Q Consensus 473 ~~g---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~-~~~~ 545 (672)
+.. .+.+...+..+...+...|+.++|.+.+++..+. .|+... .....-.....++.+.+.+.+++ ....
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 532 1136677888889999999999999999988843 454331 11122222345778888888865 3344
Q ss_pred CCH---HHHHHHHHHHHhcCCHHHHHHHHH--HHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 546 PNK---VVWRCLLSGCKTHKDLVLGRYAAE--KILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 546 p~~---~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
|+. ....++...|.+.|++++|.+.++ .+++..|++ ..+..++.++.+.|+.++|.+++++...
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 533 556788888999999999999999 578888954 5577999999999999999999997643
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.40 E-value=1.1e-09 Score=101.46 Aligned_cols=284 Identities=10% Similarity=-0.001 Sum_probs=168.3
Q ss_pred cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHH
Q 005881 256 LGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKT 335 (672)
Q Consensus 256 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 335 (672)
.|++..|.++..+-.+.+-.| ...|.....+.-..|+.+.+.+++.++.+..-.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 578888888887766665333 3345555566677788888888888877775566677777777778888888888777
Q ss_pred HhhCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCC
Q 005881 336 FDEMDE---HDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDS 412 (672)
Q Consensus 336 ~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 412 (672)
.++..+ .++........+|.+.|++.+...++..|.+.|.-.+...- ++
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~l----------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------RL----------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------HH-----------
Confidence 766544 56667777888888888888888888888888765443211 00
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005881 413 NVVIGSALVDMYAKCGRLNDARKVFDHLS---SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSA 489 (672)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 489 (672)
...+++.+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++.++..+++..|+-.+ +-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHh
Confidence 11223334443333344444444555555 34455556667777778888888888888877776666222 223
Q ss_pred hhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005881 490 CVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKS-SPIEPNKVVWRCLLSGCKTHKDLVLGR 568 (672)
Q Consensus 490 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~ 568 (672)
+.+.++.+.-++..+.-.+.++.. +..+.+|+..|.+.+.+.+|.+.|+. ++..|+...|.-+..++.+.|+...|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~--p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPED--PLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 445555555555444443332222 23444444444444444444444442 233444444444444444444444444
Q ss_pred HHHHHH
Q 005881 569 YAAEKI 574 (672)
Q Consensus 569 ~~~~~~ 574 (672)
+..+++
T Consensus 382 ~~r~e~ 387 (400)
T COG3071 382 QVRREA 387 (400)
T ss_pred HHHHHH
Confidence 444444
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=7.7e-11 Score=110.33 Aligned_cols=197 Identities=13% Similarity=0.078 Sum_probs=163.4
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005881 413 NVVIGSALVDMYAKCGRLNDARKVFDHLSS---KNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSA 489 (672)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 489 (672)
....+..+...|...|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 345567788889999999999999998763 345678888899999999999999999999863 3445677788888
Q ss_pred hhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 005881 490 CVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLG 567 (672)
Q Consensus 490 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 567 (672)
+...|++++|...++..............+..+..++...|++++|.+.+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998743222234567888899999999999999999763 3344 456788888889999999999
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 568 RYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 568 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
...++++++..|.++..+..++.++...|++++|....+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999888888888999999999999999999887754
No 53
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.39 E-value=1.5e-07 Score=92.56 Aligned_cols=531 Identities=14% Similarity=0.159 Sum_probs=297.7
Q ss_pred chhhHHHHHHhcCCChhHHHHHhccCCC-----CCcchHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHH
Q 005881 11 ITYNHLLLMYVKFSRINDAQKLFDEMPE-----RNVISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSA 85 (672)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 85 (672)
..|-..+..+.++|++...+..|+.... .....|...+....+.|-++-++.+|++.++. .| ..-.--+..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P--~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP--EAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH--HHHHHHHHH
Confidence 3444555555666666666666665432 23334666666666666666677777666542 22 224455555
Q ss_pred HhcCCChhhHHHHHHHHHHhC------CCCChhHHHHHHHHHHhcCCh---HHHHHHhhccCCC--C--cccHHHHHHHH
Q 005881 86 CASRGDARSGKEIHGRMYRSG------LELNSHVSNCLINMYGKCGLL---SSAQFVFDASLER--N--SISWVSLLSSY 152 (672)
Q Consensus 86 ~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~--~--~~~~~~li~~~ 152 (672)
++..+++++|.+.+..+.... .+.+-..|..+.+..++.-+. -....++..+..+ | ...|.+|...|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 666666666666666655321 133445555555555543221 1122333333332 2 34577777777
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHH-HhcCCCcHHHHHHHHHHhhcCCChhHH
Q 005881 153 CQCGEHVHGLKIFLLSRKSGVAISEFSCASVLGACAVLGNLKVGMQIHSLVF-KCALEFDKFVAMGLINLYAKCEKLDLA 231 (672)
Q Consensus 153 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a 231 (672)
.+.|.+++|.++|++....- .+..-|..+.++|+.-..-..+..+- ... +.+-+-+. -+++-.
T Consensus 259 Ir~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~-------------~dl~~~ 322 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDD-------------VDLELH 322 (835)
T ss_pred HHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhh-------------hhHHHH
Confidence 77777777777776665531 22233344444443211111000000 000 00100000 012222
Q ss_pred HHHHhcCCC---------------CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC------hhhHHHHHHHhhc
Q 005881 232 SRVFSNIQL---------------PDLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPS------EVTFSYVLGAFAD 290 (672)
Q Consensus 232 ~~~~~~~~~---------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~------~~t~~~ll~~~~~ 290 (672)
..-|+.+.. .++..|..-+. +..|+..+....+.+.... +.|. ...+..+-+.|-+
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~ 399 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYEN 399 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHh
Confidence 222332221 23344444333 3456777777788777654 3332 2236667778888
Q ss_pred cCCchhHHHHHHHHHHhCCCCc---hHHHHHHHHHHHccCChHHHHHHHhhCCC---------------------CCccc
Q 005881 291 VKETIGGRQLHSLIIKMGFSSF---TFVANTVLDFYSKCELLEESLKTFDEMDE---------------------HDVVS 346 (672)
Q Consensus 291 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~---------------------~~~~~ 346 (672)
.|+++.|+.+|+...+..++.- ..+|-.-..+=.+..+++.|.++.+.... ++...
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlki 479 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKI 479 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHH
Confidence 9999999999999888765543 33444444555667788888888876542 12334
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHH--HHHHHHHHcCcCchHHHHHHHHHHHhcCCCCc-ccHHHHHHHH
Q 005881 347 WNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYT--YSNILNISSDIPAIEWGKQTHCCIVKPGFDSN-VVIGSALVDM 423 (672)
Q Consensus 347 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 423 (672)
|...+.---..|-++....++++++...+...... |..+ +-...-++++.++++.-+..--.|. -.+|+..+.-
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmf---LEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk 556 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMF---LEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK 556 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHH---HHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence 55556555566788888888888887654322222 2222 2344456677777766555433333 3566766665
Q ss_pred HHh---cCCHHHHHHHHhhCCCCCch-hHHHHHHHH----HhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhcc
Q 005881 424 YAK---CGRLNDARKVFDHLSSKNLV-SWNTMLVGY----AQHGLGREALEIYSMMQENKIKPND--NTFIGVLSACVHI 493 (672)
Q Consensus 424 ~~~---~g~~~~A~~~~~~~~~~~~~-~~~~li~~~----~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~ 493 (672)
+.+ .-.++.|+.+|++..+.-+. .-..+--.| -+.|-...|+.++++.... +++.. ..|+..|.-....
T Consensus 557 fi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~ 635 (835)
T KOG2047|consen 557 FIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEI 635 (835)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHH
Confidence 554 24789999999988742111 111122223 3468888999999997654 56655 3677777654444
Q ss_pred CcHHHHHHHHHHhHHhhCCCCch---HHHHHHHHHhhccCChHHHHHHHHhCC--CCC--CHHHHHHHHHHHHhcCCHHH
Q 005881 494 GLVEEGWHYFNSMIRDHGISPRM---DHIASVVHLFACRGQTRRAYEFIKSSP--IEP--NKVVWRCLLSGCKTHKDLVL 566 (672)
Q Consensus 494 g~~~~a~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p--~~~~~~~l~~~~~~~g~~~~ 566 (672)
=-+.....+|++.++. -|+. +......++=.+.|..+.|..++.... ..| +...|.+.-..-.++|+-+.
T Consensus 636 yGv~~TR~iYekaIe~---Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT 712 (835)
T KOG2047|consen 636 YGVPRTREIYEKAIES---LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDT 712 (835)
T ss_pred hCCcccHHHHHHHHHh---CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHH
Confidence 3445566777777743 4554 334445566688999999999986421 234 67789988888899999555
Q ss_pred HHHHH
Q 005881 567 GRYAA 571 (672)
Q Consensus 567 a~~~~ 571 (672)
-+..+
T Consensus 713 ~keML 717 (835)
T KOG2047|consen 713 YKEML 717 (835)
T ss_pred HHHHH
Confidence 44443
No 54
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.38 E-value=2.4e-12 Score=123.27 Aligned_cols=251 Identities=14% Similarity=0.083 Sum_probs=59.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHH-HhhccCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHccCCh
Q 005881 251 GGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVLG-AFADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCELL 329 (672)
Q Consensus 251 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 329 (672)
..+.+.|++++|++++++......+|+...|..++. .+...++.+.|.+.++.+...+.. ++..+..++.. ...+++
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccc
Confidence 344455555555555543332221233333333222 223344455555555554443322 23333444444 455555
Q ss_pred HHHHHHHhhCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHh
Q 005881 330 EESLKTFDEMDE--HDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVK 407 (672)
Q Consensus 330 ~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 407 (672)
++|..++...-+ ++...+..++..+.+.++++++.+++++.....-.
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~------------------------------- 142 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAA------------------------------- 142 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---------------------------------
T ss_pred cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCC-------------------------------
Confidence 555555544322 34444555555566666666666666665432211
Q ss_pred cCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCC--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 005881 408 PGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLS--SK-NLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFI 484 (672)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 484 (672)
+.+...+..+...+.+.|+.++|.+.+++.. .| |....+.++..+...|+.+++.++++...+.. +.|...+.
T Consensus 143 ---~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~ 218 (280)
T PF13429_consen 143 ---PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWD 218 (280)
T ss_dssp ----T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCH
T ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHH
Confidence 1223333344444444444444444444443 12 23344444444444555554444444444431 22333344
Q ss_pred HHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHH
Q 005881 485 GVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIK 540 (672)
Q Consensus 485 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (672)
.+..++...|+.++|...|++..+. .+.|+.....+++++...|+.++|.++.+
T Consensus 219 ~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 219 ALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT-------------
T ss_pred HHHHHhccccccccccccccccccc--ccccccccccccccccccccccccccccc
Confidence 4444455555555555555544421 11244444455555555555555554443
No 55
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.36 E-value=2.7e-08 Score=99.88 Aligned_cols=495 Identities=13% Similarity=0.080 Sum_probs=267.6
Q ss_pred HcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHh---cCCChhhH-------------------HHH----HHHHHHh
Q 005881 52 SQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSACA---SRGDARSG-------------------KEI----HGRMYRS 105 (672)
Q Consensus 52 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~---~~~~~~~a-------------------~~~----~~~~~~~ 105 (672)
...+.++.++.-+.....++.+.+..++..+..++. -.++.+++ ... +.++...
T Consensus 238 ~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~ 317 (799)
T KOG4162|consen 238 KKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLK 317 (799)
T ss_pred cCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHh
Confidence 345677777777777776666666666666554432 33344433 111 1111122
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHhhccCCC---CcccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH-H
Q 005881 106 GLELNSHVSNCLINMYGKCGLLSSAQFVFDASLER---NSISWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSC-A 181 (672)
Q Consensus 106 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~-~ 181 (672)
.+.-|..+|..|.-+...+|+++.+.+.|++...- ....|+.+-..+.-.|.-..|+.+++.-....-.|+..+- .
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 33446677777777777777777777777764432 3455777777777777777777777666554333443333 3
Q ss_pred HHHHHHh-ccCChHHHHHHHHHHHHhc-C---CCcHHHHHHHHHHhhcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 005881 182 SVLGACA-VLGNLKVGMQIHSLVFKCA-L---EFDKFVAMGLINLYAKCEKLDLASRVFSNIQLPDLTAWSALIGGYAQL 256 (672)
Q Consensus 182 ~ll~~~~-~~~~~~~a~~~~~~~~~~~-~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 256 (672)
..-+.|. +.+..+++...-.+++... - ...+..+..+.-+|...-. +.+..+ -+.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~------------~a~~~s--------eR~ 457 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR------------QANLKS--------ERD 457 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh------------cCCChH--------HHH
Confidence 3333332 4445555555444444311 0 0111111111111110000 000000 011
Q ss_pred CChhHHHHHHHHHHHCC-CCCChhhHHHHHHHhhccCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHH
Q 005881 257 GKACEAIDLFVKMFSSG-LMPSEVTFSYVLGAFADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKT 335 (672)
Q Consensus 257 ~~~~~a~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 335 (672)
....++++.+++..+.+ -.|+...|..+ -++-.++.+.|.+...+..+.+-..+...+..|.-.+...+++.+|..+
T Consensus 458 ~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 458 ALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 12346677777776643 23444444333 3445566777777777777776666667777777677777777777776
Q ss_pred HhhCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCC
Q 005881 336 FDEMDEH---DVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDS 412 (672)
Q Consensus 336 ~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 412 (672)
.+...+. |-.....-+..-..-++.++++.....+..--- +...+.
T Consensus 536 vd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we--~~~~~q----------------------------- 584 (799)
T KOG4162|consen 536 VDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWE--AEYGVQ----------------------------- 584 (799)
T ss_pred HHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHH--hhhhHh-----------------------------
Confidence 6654431 111111112222334555555555554432100 000000
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhhCC-----C-CCchhHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCC--CC--
Q 005881 413 NVVIGSALVDMYAKCGRLNDARKVFDHLS-----S-KNLVSWNTMLVGYAQHG---LGREALEIYSMMQENKIK--PN-- 479 (672)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~-~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~--p~-- 479 (672)
..++-....+....+. . ..+.++..+..-....+ ..+.. +...-+. |+
T Consensus 585 -------------~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~------Lp~s~~~~~~~~~ 645 (799)
T KOG4162|consen 585 -------------QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK------LPSSTVLPGPDSL 645 (799)
T ss_pred -------------hhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc------cCcccccCCCCch
Confidence 0000111111111111 0 00111111111111000 00000 1111111 22
Q ss_pred ----HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHh-CCCCCC-HHHHH
Q 005881 480 ----DNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKS-SPIEPN-KVVWR 552 (672)
Q Consensus 480 ----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~-~~~~~ 552 (672)
...|......+.+.+..++|...+.+.. ++.| ....|...+..+...|.+++|.+.|.. +.+.|+ +.+..
T Consensus 646 ~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~ 722 (799)
T KOG4162|consen 646 WYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMT 722 (799)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHH
Confidence 1234455566777888888887776654 4555 567778788889999999999988864 567885 45778
Q ss_pred HHHHHHHhcCCHHHHHH--HHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCCceeEE
Q 005881 553 CLLSGCKTHKDLVLGRY--AAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKSLKKDTGCSWT 622 (672)
Q Consensus 553 ~l~~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 622 (672)
++...+.+.|+...|.. .+..+++++|.++.+|..++.++.+.|+.++|.+-|....+-.. ..|-.+|.
T Consensus 723 Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~-S~PV~pFs 793 (799)
T KOG4162|consen 723 ALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE-SNPVLPFS 793 (799)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc-CCCccccc
Confidence 88888899998888888 99999999999999999999999999999999999997765332 33444453
No 56
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=9.6e-07 Score=91.25 Aligned_cols=462 Identities=15% Similarity=0.150 Sum_probs=263.3
Q ss_pred HHHHHHHHHhcCChHHHHHHhhccCC--C-----CcccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 005881 114 SNCLINMYGKCGLLSSAQFVFDASLE--R-----NSISWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCASVLGA 186 (672)
Q Consensus 114 ~~~li~~~~~~g~~~~a~~~~~~~~~--~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 186 (672)
+..+.+.|.+.|-...|.+.+..+.. + +...-..+ -.|.-.-.++.+++.++.|...+++-+-.+...+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwL-v~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWL-VNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHH-HHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 55667778888888888887766543 1 11111112 2333445678888888888888887777766666655
Q ss_pred HhccCChHHHHHHHHHHHHh-----------cCCCcHHHHHHHHHHhhcCCChhHHHHHHhcCCC---------------
Q 005881 187 CAVLGNLKVGMQIHSLVFKC-----------ALEFDKFVAMGLINLYAKCEKLDLASRVFSNIQL--------------- 240 (672)
Q Consensus 187 ~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------------- 240 (672)
|+..=..+...++|+..... ++.-|+.+.-..|.+.++.|++.+.+++.++-.-
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL 767 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 767 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccc
Confidence 55544445555555544321 3456777777888899999988888887754320
Q ss_pred ----C------------CcchH---H---HHHHHHHhc------------------------------------------
Q 005881 241 ----P------------DLTAW---S---ALIGGYAQL------------------------------------------ 256 (672)
Q Consensus 241 ----~------------~~~~~---~---~li~~~~~~------------------------------------------ 256 (672)
| |.+.| | -.|..|.+.
T Consensus 768 ~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~E 847 (1666)
T KOG0985|consen 768 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEE 847 (1666)
T ss_pred cccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHH
Confidence 0 11111 0 112222222
Q ss_pred ----CChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCchhH-H--------HHHHH-HHHh-----------C---
Q 005881 257 ----GKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVKETIGG-R--------QLHSL-IIKM-----------G--- 308 (672)
Q Consensus 257 ----~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a-~--------~~~~~-~~~~-----------~--- 308 (672)
++..--+..++.....|. .|..|++.+...|..+++-.+. . .+... ..++ |
T Consensus 848 vEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD 926 (1666)
T KOG0985|consen 848 VEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCD 926 (1666)
T ss_pred HHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCc
Confidence 111112222233333332 3556666666555444321111 0 00000 0010 1
Q ss_pred -----CCCchHHHHHHHHHHHccCChHHHHHHHhhCC----------------C-CCcccHHHHHHHHHhcCChhHHHHH
Q 005881 309 -----FSSFTFVANTVLDFYSKCELLEESLKTFDEMD----------------E-HDVVSWNALIAGHLASCHYGEAIEL 366 (672)
Q Consensus 309 -----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----------------~-~~~~~~~~li~~~~~~~~~~~A~~~ 366 (672)
+......|..+.+.+.+..+.+--.+++.+-. + .|+..-+..+.++...+-+.+-+++
T Consensus 927 ~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIEL 1006 (1666)
T KOG0985|consen 927 LELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIEL 1006 (1666)
T ss_pred HHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHH
Confidence 11112233334444444444443333332110 0 3444455566777777777777777
Q ss_pred HHHHHhCCCCC-ChHHHHH-HHH---------------------------HHcCcCchHHHHHHHHHHHhcCCCCcccHH
Q 005881 367 LKDMLFEGHCP-NLYTYSN-ILN---------------------------ISSDIPAIEWGKQTHCCIVKPGFDSNVVIG 417 (672)
Q Consensus 367 ~~~m~~~g~~p-~~~t~~~-ll~---------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 417 (672)
++++.-....- ....... ++- .+...+-+++|..+|+.. ..+....
T Consensus 1007 LEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf-----~~n~~A~ 1081 (1666)
T KOG0985|consen 1007 LEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKF-----DMNVSAI 1081 (1666)
T ss_pred HHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHh-----cccHHHH
Confidence 77765321111 0011111 111 111122222333333221 1111111
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHH
Q 005881 418 SALVDMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVE 497 (672)
Q Consensus 418 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 497 (672)
+.|++ ..+.+++|.++-++..+| ..|..+..+-.+.|...+|++-|-+ .-|+..|..++..+.+.|.++
T Consensus 1082 ~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1082 QVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYE 1150 (1666)
T ss_pred HHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHH
Confidence 22221 234555555555554443 5799999999999999999987743 234567999999999999999
Q ss_pred HHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 005881 498 EGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILST 577 (672)
Q Consensus 498 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 577 (672)
+-.+++.... +...+|..+ +.|+-+|++.+++.+-.+++. -||..-...+.+-|...|.++.|+-+|.
T Consensus 1151 dLv~yL~MaR-kk~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~----- 1218 (1666)
T KOG0985|consen 1151 DLVKYLLMAR-KKVREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS----- 1218 (1666)
T ss_pred HHHHHHHHHH-HhhcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH-----
Confidence 9999986554 545666655 468999999999999888775 3677777888888999999999998887
Q ss_pred CCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 005881 578 DPEDTSAHIMLSNVYAEANMWDETAKVRKIM 608 (672)
Q Consensus 578 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 608 (672)
+.+-|..|+..+...|.++.|...-++.
T Consensus 1219 ---~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1219 ---NVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred ---HhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5566788888888888888887766654
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.32 E-value=5.8e-09 Score=96.76 Aligned_cols=284 Identities=13% Similarity=0.021 Sum_probs=176.8
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHH
Q 005881 155 CGEHVHGLKIFLLSRKSGVAISEFSCASVLGACAVLGNLKVGMQIHSLVFKCALEFDKFVAMGLINLYAKCEKLDLASRV 234 (672)
Q Consensus 155 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 234 (672)
.|+|..|.++..+-.+.+-.| ...|.....+.-..|+.+.+-+.+.++.+....++..+.-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 577888888877766655333 3445566666677888888888888887765566677777777777788888777766
Q ss_pred HhcCC---CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCchhHHHHHHHHHHhCCCC
Q 005881 235 FSNIQ---LPDLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVKETIGGRQLHSLIIKMGFSS 311 (672)
Q Consensus 235 ~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 311 (672)
.++.. ..+.........+|.+.|++.+...++.+|.+.|+--|...- + .
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~-----------l 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------R-----------L 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------H-----------H
Confidence 65544 356667777888888888888888888888887754443211 0 0
Q ss_pred chHHHHHHHHHHHccCChHHHHHHHhhCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 005881 312 FTFVANTVLDFYSKCELLEESLKTFDEMDE---HDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNI 388 (672)
Q Consensus 312 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 388 (672)
...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+..+ +-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHh
Confidence 122345555555555555555566666664 4566666778888889999999999988888877666222 224
Q ss_pred HcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCchhHHHHHHHHHhcCChHHHHH
Q 005881 389 SSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLS--SKNLVSWNTMLVGYAQHGLGREALE 466 (672)
Q Consensus 389 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~ 466 (672)
+.+.++.+.-.+..+...+.. +.++..+.+|...|.+.+.+.+|...|+... .|+..+|+-+..++.+.|++.+|.+
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHH
Confidence 445555554444444433321 1122445555555555555555555555443 3444555555555555555555555
Q ss_pred HHHHHH
Q 005881 467 IYSMMQ 472 (672)
Q Consensus 467 ~~~~m~ 472 (672)
.+++..
T Consensus 383 ~r~e~L 388 (400)
T COG3071 383 VRREAL 388 (400)
T ss_pred HHHHHH
Confidence 554443
No 58
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.31 E-value=2e-09 Score=96.62 Aligned_cols=300 Identities=12% Similarity=0.118 Sum_probs=176.5
Q ss_pred cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCchhHHHHHHHHHHhC-CCCc--hHHHHHHHHHHHccCChHHH
Q 005881 256 LGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVKETIGGRQLHSLIIKMG-FSSF--TFVANTVLDFYSKCELLEES 332 (672)
Q Consensus 256 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~~~~~~a 332 (672)
.++.++|.++|-+|.+.. +.+..+-.++-+.+-+.|..+.|.++++.+.++. .+.+ ....-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 466777888887777631 1222233344455666677777777776665532 1111 12233455666777777777
Q ss_pred HHHHhhCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcC
Q 005881 333 LKTFDEMDEHDV---VSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPG 409 (672)
Q Consensus 333 ~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 409 (672)
+.+|..+.+.+. .....|+..|-+..++++|++.-+++.+.|-++..+-.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI--------------------------- 179 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI--------------------------- 179 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH---------------------------
Confidence 777777665322 24455667777777777777777776665444332211
Q ss_pred CCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCCCch---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005881 410 FDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSKNLV---SWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGV 486 (672)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 486 (672)
...|.-|...+....+++.|..++.+..+.|+. .--.+...+...|++++|++.|+...+++..--......|
T Consensus 180 ----AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 180 ----AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred ----HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 112334444555567778888888777643332 3333456677888888888888888886433223456777
Q ss_pred HHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHH
Q 005881 487 LSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFI-KSSPIEPNKVVWRCLLSGCKTHKDLV 565 (672)
Q Consensus 487 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~ 565 (672)
..+|.+.|+.+++...+.++.+ ..+..+.-..+.+......-.+.|..++ +.+.-+|+...+..++..-...
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~---~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~d---- 328 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAME---TNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLAD---- 328 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH---ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcc----
Confidence 7888888888888888877763 3455555555555554444455555544 3445566666665555432111
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCCceeE
Q 005881 566 LGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKSLKKDTGCSW 621 (672)
Q Consensus 566 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 621 (672)
+..|++.+...+++.|..+.++..|....
T Consensus 329 ---------------------------aeeg~~k~sL~~lr~mvge~l~~~~~YRC 357 (389)
T COG2956 329 ---------------------------AEEGRAKESLDLLRDMVGEQLRRKPRYRC 357 (389)
T ss_pred ---------------------------ccccchhhhHHHHHHHHHHHHhhcCCcee
Confidence 12245666677777777666666654443
No 59
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=1.7e-08 Score=91.68 Aligned_cols=134 Identities=10% Similarity=0.108 Sum_probs=89.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCC-CchHHHH-HHHH
Q 005881 447 SWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGIS-PRMDHIA-SVVH 524 (672)
Q Consensus 447 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~-~l~~ 524 (672)
--.++...+.-..++++++-+++....-= .-|...-..+..+.+..|++.+|.++|-.+. +.+ .+..+|. .|..
T Consensus 361 GRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is---~~~ikn~~~Y~s~LAr 436 (557)
T KOG3785|consen 361 GRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELFIRIS---GPEIKNKILYKSMLAR 436 (557)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhc---ChhhhhhHHHHHHHHH
Confidence 34455566666667777777777776642 2333333347778888888888888886654 222 2334444 4567
Q ss_pred HhhccCChHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHhcCCCCCCchH
Q 005881 525 LFACRGQTRRAYEFIKSSPIEPNKVVWRCLL-SGCKTHKDLVLGRYAAEKILSTDPEDTSAH 585 (672)
Q Consensus 525 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 585 (672)
+|.++++.+-|.+++-++.-..+..+...++ .-|.+.+.+--|-++|+.+-.++| +++.|
T Consensus 437 Cyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP-~pEnW 497 (557)
T KOG3785|consen 437 CYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP-TPENW 497 (557)
T ss_pred HHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC-Ccccc
Confidence 8888999999998887775333444444444 458899999899999999888888 44433
No 60
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=5e-12 Score=84.07 Aligned_cols=50 Identities=30% Similarity=0.499 Sum_probs=44.2
Q ss_pred CCcchHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhc
Q 005881 39 RNVISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSACAS 88 (672)
Q Consensus 39 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 88 (672)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888999999999999999999999999988999999999999888864
No 61
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=6.7e-07 Score=92.35 Aligned_cols=548 Identities=14% Similarity=0.097 Sum_probs=296.9
Q ss_pred hhHHHHHHhcCCChhHHHHHhccCCC--CCcchHHHH-----HHHHHcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHH
Q 005881 13 YNHLLLMYVKFSRINDAQKLFDEMPE--RNVISWSAL-----ISGFSQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSA 85 (672)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l-----i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 85 (672)
+..+.+.|-+.|-...|++.|..+.. +.+++ +.+ +-.|.-.-.++.+++.++.|...++..|..+...+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVh-th~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVH-THLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHH-hccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 55667778889999999999888764 22211 111 22344444688899999999988888888877777766
Q ss_pred HhcCCChhhHHHHHHHHHHh-----------CCCCChhHHHHHHHHHHhcCChHHHHHHhhccCC---------------
Q 005881 86 CASRGDARSGKEIHGRMYRS-----------GLELNSHVSNCLINMYGKCGLLSSAQFVFDASLE--------------- 139 (672)
Q Consensus 86 ~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------------- 139 (672)
|...-..+...++|+..... ++.-|+.+.-..|.+.++.|++.+.+++.++-.-
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL 767 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 767 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccc
Confidence 66655556666666665532 2456788888899999999999999888754210
Q ss_pred ----C-----CcccH-H------------HHHHHHHhcCChHHHHHHHHHHHhCCCCCChh-------------hHHHHH
Q 005881 140 ----R-----NSISW-V------------SLLSSYCQCGEHVHGLKIFLLSRKSGVAISEF-------------SCASVL 184 (672)
Q Consensus 140 ----~-----~~~~~-~------------~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-------------t~~~ll 184 (672)
| |-.-+ + ..|..|.+.-++.+.-.+.-.+... .-+.. ...-+.
T Consensus 768 ~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~--dC~E~~ik~Li~~v~gq~~~deLv 845 (1666)
T KOG0985|consen 768 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDV--DCSEDFIKNLILSVRGQFPVDELV 845 (1666)
T ss_pred cccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcC--CCcHHHHHHHHHHHhccCChHHHH
Confidence 0 11111 1 1233333332222222222111111 11111 112233
Q ss_pred HHHhccCChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHHHhcC------------CCCCc---------
Q 005881 185 GACAVLGNLKVGMQIHSLVFKCALEFDKFVAMGLINLYAKCEKLDLASRVFSNI------------QLPDL--------- 243 (672)
Q Consensus 185 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~------------~~~~~--------- 243 (672)
.-+-+.+++..-...++..++.|.. |+.++++|...|...++-.+- .+++- .++|+
T Consensus 846 ~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~--fLkeN~yYDs~vVGkYCEKRDP~lA~vaYer 922 (1666)
T KOG0985|consen 846 EEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPER--FLKENPYYDSKVVGKYCEKRDPHLACVAYER 922 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHH--hcccCCcchhhHHhhhhcccCCceEEEeecc
Confidence 3444555666666667777777755 778888888888765432111 01000 00000
Q ss_pred --------------chHHHHHHHHHhcCCh---hHHH--------HHHHHHHHCCC--CCChhhHHHHHHHhhccCCchh
Q 005881 244 --------------TAWSALIGGYAQLGKA---CEAI--------DLFVKMFSSGL--MPSEVTFSYVLGAFADVKETIG 296 (672)
Q Consensus 244 --------------~~~~~li~~~~~~~~~---~~a~--------~~~~~m~~~~~--~p~~~t~~~ll~~~~~~~~~~~ 296 (672)
..|....+.+....+. .+.+ .++++..+.++ ..|+...+....++...+-..+
T Consensus 923 GqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~e 1002 (1666)
T KOG0985|consen 923 GQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNE 1002 (1666)
T ss_pred cCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHH
Confidence 0111111122222221 1111 12222222221 1223333334444444444444
Q ss_pred HHHHHHHHHHhC--CCCchHHHHHHHHH---------------------------HHccCChHHHHHHHhhCCC------
Q 005881 297 GRQLHSLIIKMG--FSSFTFVANTVLDF---------------------------YSKCELLEESLKTFDEMDE------ 341 (672)
Q Consensus 297 a~~~~~~~~~~~--~~~~~~~~~~li~~---------------------------~~~~~~~~~a~~~~~~~~~------ 341 (672)
-.++++.++-.. +..+...-|.|+-. ....+-+++|..+|+...-
T Consensus 1003 LIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~ 1082 (1666)
T KOG0985|consen 1003 LIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQ 1082 (1666)
T ss_pred HHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHH
Confidence 444444433211 11111111111111 1122223344444433210
Q ss_pred -------------------CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHH
Q 005881 342 -------------------HDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTH 402 (672)
Q Consensus 342 -------------------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 402 (672)
..+..|+.+..+-.+.|...+|++-|-+. -|+..|.-+++.+.+.|.++.-..++
T Consensus 1083 VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1083 VLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred HHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 12346788888888888888887766432 36677888888888888888888888
Q ss_pred HHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 005881 403 CCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNT 482 (672)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 482 (672)
....+..-+|.+. +.|+-+|++.+++.+-++++. .||......+..-|...|.++.|.-+|... .-
T Consensus 1157 ~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN 1222 (1666)
T KOG0985|consen 1157 LMARKKVREPYID--SELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SN 1222 (1666)
T ss_pred HHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hh
Confidence 8777776666554 578888888888877766543 466666666666666667666665555432 22
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005881 483 FIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKTHK 562 (672)
Q Consensus 483 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g 562 (672)
|..|...+...|.+..|...-++. .+..+|..+..++...+.+.-|.- ..+.+--...-...++..|...|
T Consensus 1223 ~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlAQi--CGL~iivhadeLeeli~~Yq~rG 1293 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLAQI--CGLNIIVHADELEELIEYYQDRG 1293 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHHHh--cCceEEEehHhHHHHHHHHHhcC
Confidence 555555556666666665543322 234455555555555444433321 11111123334455666677777
Q ss_pred CHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhc
Q 005881 563 DLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEA 595 (672)
Q Consensus 563 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 595 (672)
-+++-+.+++..+.++..+-+.+.-|+-+|.+-
T Consensus 1294 yFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1294 YFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred cHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 777777777777777776777777777776664
No 62
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=5.2e-08 Score=90.55 Aligned_cols=304 Identities=10% Similarity=-0.030 Sum_probs=206.3
Q ss_pred CCChhhHHHHHHHhh--ccCCchhHHHHHHHHH-HhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCCCCCcccHHHH-
Q 005881 275 MPSEVTFSYVLGAFA--DVKETIGGRQLHSLII-KMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMDEHDVVSWNAL- 350 (672)
Q Consensus 275 ~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l- 350 (672)
.|...+...-+.+++ ..++-..+.+.+-.+. ..-++.++.....+.+++...|+.++|...|++...-|+.+...|
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD 270 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD 270 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence 344445444454443 3333334444333333 345677888899999999999999999999998876554443332
Q ss_pred --HHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcC
Q 005881 351 --IAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCG 428 (672)
Q Consensus 351 --i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (672)
.--+.+.|+.+....+...+.... .-....|-.-.......++++.|..+-+..++.... +...+-.-...+...|
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhcc
Confidence 233456788888777777766432 112222222233344567777888777777765422 2222333345667789
Q ss_pred CHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHhh-ccCcHHHHHHHH
Q 005881 429 RLNDARKVFDHLS---SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVL-SACV-HIGLVEEGWHYF 503 (672)
Q Consensus 429 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~g~~~~a~~~~ 503 (672)
++++|.-.|+... .-+..+|.-|+.+|...|++.+|.-+-+..... ++.+..+...+. ..|. ...--++|..++
T Consensus 349 R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ 427 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFA 427 (564)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHH
Confidence 9999998888765 356779999999999999999998887776653 344445554442 2332 233457888888
Q ss_pred HHhHHhhCCCCc-hHHHHHHHHHhhccCChHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 005881 504 NSMIRDHGISPR-MDHIASVVHLFACRGQTRRAYEFIKS-SPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPED 581 (672)
Q Consensus 504 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 581 (672)
++-. .+.|+ ......+...+.+.|..+++..++++ +...||....+.|.......+.+++|...|..++.++|++
T Consensus 428 ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 428 EKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred Hhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 8665 56775 46777888899999999999999976 5567888888888899999999999999999999999976
Q ss_pred Cch
Q 005881 582 TSA 584 (672)
Q Consensus 582 ~~~ 584 (672)
..+
T Consensus 505 ~~s 507 (564)
T KOG1174|consen 505 KRT 507 (564)
T ss_pred hHH
Confidence 443
No 63
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=1.2e-11 Score=82.16 Aligned_cols=50 Identities=28% Similarity=0.557 Sum_probs=48.1
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 005881 443 KNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVH 492 (672)
Q Consensus 443 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 492 (672)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 64
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.26 E-value=5.4e-10 Score=95.60 Aligned_cols=162 Identities=12% Similarity=0.114 Sum_probs=142.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHH
Q 005881 447 SWNTMLVGYAQHGLGREALEIYSMMQENKIKPND-NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVH 524 (672)
Q Consensus 447 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 524 (672)
+...|..+|.+.|++..|.+-+++.++. .|+. .++..+...|.+.|..+.|.+.|+... .+.| +-++.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 3556788999999999999999999994 6766 589999999999999999999999887 5677 5689999999
Q ss_pred HhhccCChHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHH
Q 005881 525 LFACRGQTRRAYEFIKSSPIEP----NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDE 600 (672)
Q Consensus 525 ~~~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 600 (672)
.+|..|++++|...|++.-..| -..+|..+.....+.|+.+.|+..++++++++|+++.....+++...+.|++-+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 9999999999999998753344 244677777777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCC
Q 005881 601 TAKVRKIMKEKSL 613 (672)
Q Consensus 601 a~~~~~~~~~~~~ 613 (672)
|...++....++.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999999987766
No 65
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=1.6e-08 Score=90.88 Aligned_cols=277 Identities=9% Similarity=0.043 Sum_probs=172.4
Q ss_pred cCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCCCCCcccH-------HHHHHHHHhcCChhHH
Q 005881 291 VKETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMDEHDVVSW-------NALIAGHLASCHYGEA 363 (672)
Q Consensus 291 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~li~~~~~~~~~~~A 363 (672)
+.+.++|...|-+|.+.. +.+..+.-+|-+.|-+.|..|.|+++.+.+.+....|+ -.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 345667777777766632 23334445666777777777777777776655222222 2344456666677777
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 005881 364 IELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSK 443 (672)
Q Consensus 364 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 443 (672)
..+|..+.+.|.. -.... ..|+..|-+..++++|.++-+++.+.
T Consensus 127 E~~f~~L~de~ef-a~~Al-----------------------------------qqLl~IYQ~treW~KAId~A~~L~k~ 170 (389)
T COG2956 127 EDIFNQLVDEGEF-AEGAL-----------------------------------QQLLNIYQATREWEKAIDVAERLVKL 170 (389)
T ss_pred HHHHHHHhcchhh-hHHHH-----------------------------------HHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 7777766654311 11122 34555666666666666666555432
Q ss_pred Cch--------hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC
Q 005881 444 NLV--------SWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDN-TFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP 514 (672)
Q Consensus 444 ~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 514 (672)
+.. .|.-+...+....++++|..++.+..+. .|+.+ .-..+.......|+++.|.+.++...+. +..-
T Consensus 171 ~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~y 247 (389)
T COG2956 171 GGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEY 247 (389)
T ss_pred CCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHH
Confidence 222 2334555566678899999999999885 45554 3345667788899999999999988743 3333
Q ss_pred chHHHHHHHHHhhccCChHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 005881 515 RMDHIASVVHLFACRGQTRRAYEFIKS-SPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYA 593 (672)
Q Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 593 (672)
-.++...|..+|...|+.++...++.+ +...++...-..+...-....-.+.|.....+-+.-.| +...+..+++...
T Consensus 248 l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P-t~~gf~rl~~~~l 326 (389)
T COG2956 248 LSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKP-TMRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCC-cHHHHHHHHHhhh
Confidence 457888899999999999999999876 44556666665666655555556677777777777778 4444455555444
Q ss_pred hcCChHHHHHHHHHH
Q 005881 594 EANMWDETAKVRKIM 608 (672)
Q Consensus 594 ~~g~~~~a~~~~~~~ 608 (672)
.-+.-..+.+-+..+
T Consensus 327 ~daeeg~~k~sL~~l 341 (389)
T COG2956 327 ADAEEGRAKESLDLL 341 (389)
T ss_pred ccccccchhhhHHHH
Confidence 333322233334433
No 66
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.5e-07 Score=91.81 Aligned_cols=434 Identities=12% Similarity=0.073 Sum_probs=242.5
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhcC-CCcHHHHHHHHHHhh--cCCC
Q 005881 151 SYCQCGEHVHGLKIFLLSRKSGVAISEFSCASVLGACAVLGNLKVGMQIHSLVFKCAL-EFDKFVAMGLINLYA--KCEK 227 (672)
Q Consensus 151 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~--~~g~ 227 (672)
.+...|++++|.....++...+ +-+...+..-+-+....+.++.|..+.+. .+. ..+.+.+ +=.+|| +.+.
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~~~~~~~~~--fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGALLVINSFF--FEKAYCEYRLNK 94 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cchhhhcchhh--HHHHHHHHHccc
Confidence 3444555666666655555543 22233344444444555555555533221 111 1111111 234443 6788
Q ss_pred hhHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccCCchhHHHHHHHHHH
Q 005881 228 LDLASRVFSNIQLPDLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMP-SEVTFSYVLGAFADVKETIGGRQLHSLIIK 306 (672)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 306 (672)
.|+|...++...+.+..+...-...+.+.|++++|+++|+.+.+++..- |...-..++.+-... .. ..+..
T Consensus 95 ~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~~-~~~q~ 166 (652)
T KOG2376|consen 95 LDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------QV-QLLQS 166 (652)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------hH-HHHHh
Confidence 8888888886655555566666677888999999999999987765322 111122222111110 00 01222
Q ss_pred hCCCCchHHHHH---HHHHHHccCChHHHHHHHhhCC--------CCCcc----------cHHHHHHHHHhcCChhHHHH
Q 005881 307 MGFSSFTFVANT---VLDFYSKCELLEESLKTFDEMD--------EHDVV----------SWNALIAGHLASCHYGEAIE 365 (672)
Q Consensus 307 ~~~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~~~--------~~~~~----------~~~~li~~~~~~~~~~~A~~ 365 (672)
....| ..+|.. ....+...|++.+|+++++... +.|.. .---|.-.+...|+.++|.+
T Consensus 167 v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 167 VPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred ccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 22222 222222 2345567889999998888762 11111 11223446678899999999
Q ss_pred HHHHHHhCCCCCChHHHHHHHH---HHcCcCchHHH--HHHHHH-----------HHhcCCCCcccHHHHHHHHHHhcCC
Q 005881 366 LLKDMLFEGHCPNLYTYSNILN---ISSDIPAIEWG--KQTHCC-----------IVKPGFDSNVVIGSALVDMYAKCGR 429 (672)
Q Consensus 366 ~~~~m~~~g~~p~~~t~~~ll~---~~~~~~~~~~a--~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~~g~ 429 (672)
++...++.. .+|........+ +.....++... ...++. .....-.-.+.--+.++.+|. +.
T Consensus 246 iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk 322 (652)
T KOG2376|consen 246 IYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NK 322 (652)
T ss_pred HHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hh
Confidence 999998874 344433322222 22222222221 111111 110000111112234444443 55
Q ss_pred HHHHHHHHhhCCCCC-chhHHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCcHHHHHHHHH
Q 005881 430 LNDARKVFDHLSSKN-LVSWNTMLVGYA--QHGLGREALEIYSMMQENKIKPND--NTFIGVLSACVHIGLVEEGWHYFN 504 (672)
Q Consensus 430 ~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~ 504 (672)
.+.+.++........ ...+..++.... +...+.+|.+++...-+. .|.. ......+......|+++.|.+++.
T Consensus 323 ~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 323 MDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 677777777776433 233444443332 223577888888887764 4554 344445566788999999999988
Q ss_pred --------HhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHh--------CCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 005881 505 --------SMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKS--------SPIEPN-KVVWRCLLSGCKTHKDLVLG 567 (672)
Q Consensus 505 --------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--------~~~~p~-~~~~~~l~~~~~~~g~~~~a 567 (672)
.+. .+.-.+.+...++..+.+.++.+-|.+++.+ +...+. ...|.-++..-.++|+.++|
T Consensus 401 ~~~~~~~ss~~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 401 LFLESWKSSIL---EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHhhhhhhhhh---hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 332 2233456778888888888876655555432 332332 22444455556678999999
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 005881 568 RYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIM 608 (672)
Q Consensus 568 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 608 (672)
...++++++.+|++......++.+|++.. .+.|..+-+.+
T Consensus 478 ~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k~L 517 (652)
T KOG2376|consen 478 SSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhhcC
Confidence 99999999999999999999999998864 66676665543
No 67
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.3e-07 Score=91.78 Aligned_cols=281 Identities=11% Similarity=0.002 Sum_probs=206.7
Q ss_pred CCCchHHHHHHHHHHHccCChHHHHHHHhhCCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHH
Q 005881 309 FSSFTFVANTVLDFYSKCELLEESLKTFDEMDEHD---VVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNI 385 (672)
Q Consensus 309 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~l 385 (672)
...++.+.....+-+...+++.+..++++.+.+.| ...+..-|.++...|+..+-..+=.+|++. .+-...+|-++
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 34455555666777778888888888888887643 345555677888888888887777788765 23356778787
Q ss_pred HHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhcCChH
Q 005881 386 LNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSS---KNLVSWNTMLVGYAQHGLGR 462 (672)
Q Consensus 386 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 462 (672)
---|...|+..+|++.+......... -...|-.+...|+-.|.-|.|...+....+ .....+--+..-|.+.++.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 77777788999999988877643321 234566778888888988888887766542 11122333556688899999
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHhHHhhC-CCC----chHHHHHHHHHhhccCChHHHH
Q 005881 463 EALEIYSMMQENKIKPND-NTFIGVLSACVHIGLVEEGWHYFNSMIRDHG-ISP----RMDHIASVVHLFACRGQTRRAY 536 (672)
Q Consensus 463 ~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~p----~~~~~~~l~~~~~~~g~~~~A~ 536 (672)
.|.+.|.+... +.|+. ...+-+.-.....+.+.+|..+|+....... +.+ -..+++.|+.+|.+.+.+++|+
T Consensus 398 LAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 398 LAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999999887 56655 4566666666778899999999988762211 111 2356889999999999999999
Q ss_pred HHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 005881 537 EFIKS-SPIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYA 593 (672)
Q Consensus 537 ~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 593 (672)
..+++ +...| +..++.++.-.+...|+++.|...|.+++.+.|++..+-..|..+..
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 99986 33445 77788888888999999999999999999999988776666665543
No 68
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.22 E-value=5e-09 Score=104.53 Aligned_cols=230 Identities=14% Similarity=0.129 Sum_probs=166.3
Q ss_pred HHHHHHHHHHcCcCchHHHHHHHHHHHhc-----CC-CCcc-cHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CC
Q 005881 380 YTYSNILNISSDIPAIEWGKQTHCCIVKP-----GF-DSNV-VIGSALVDMYAKCGRLNDARKVFDHLSS--------KN 444 (672)
Q Consensus 380 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~ 444 (672)
.|...+...|...|+++.|..+++...+. |. .|.. ...+.+...|...+++++|..+|+++.. .+
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34445666677777777777776665543 21 1121 2233466778888999999888887751 12
Q ss_pred ---chhHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCH-H-HHHHHHHHhhccCcHHHHHHHHHHhHHhhC--C
Q 005881 445 ---LVSWNTMLVGYAQHGLGREALEIYSMMQE-----NKIKPND-N-TFIGVLSACVHIGLVEEGWHYFNSMIRDHG--I 512 (672)
Q Consensus 445 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~-~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~ 512 (672)
..+++.|...|...|++++|..++++..+ .|..+.. . -++.+...|...+.+++|..+++...+.+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 23778888889999999988888877653 1222222 2 467777889999999999999988765443 2
Q ss_pred CCc----hHHHHHHHHHhhccCChHHHHHHHHhC-------C--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhc--
Q 005881 513 SPR----MDHIASVVHLFACRGQTRRAYEFIKSS-------P--IEPN-KVVWRCLLSGCKTHKDLVLGRYAAEKILS-- 576 (672)
Q Consensus 513 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~--~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 576 (672)
.++ ..+++.|...|...|++++|.+++++. . ..+. ...++.+...|.+.++++.|.+.|++...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 367999999999999999999998753 1 2232 44677888889999999999999988754
Q ss_pred --CCCCC---CchHHHHHHHHHhcCChHHHHHHHHHHh
Q 005881 577 --TDPED---TSAHIMLSNVYAEANMWDETAKVRKIMK 609 (672)
Q Consensus 577 --~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 609 (672)
..|++ ..+|..|+.+|.+.|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34544 4568899999999999999999998775
No 69
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=4.4e-08 Score=93.11 Aligned_cols=185 Identities=14% Similarity=0.129 Sum_probs=103.9
Q ss_pred HHHHHHHccCChHHHHHHHhhCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChHHHHHHHHHHcCcC
Q 005881 318 TVLDFYSKCELLEESLKTFDEMDE---HDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCP-NLYTYSNILNISSDIP 393 (672)
Q Consensus 318 ~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~ 393 (672)
-+..+|....+.++..+.|+...+ .++.+|..-...+.-.+++++|..-|++.+.. .| +...|..+--+..+.+
T Consensus 365 ~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~ 442 (606)
T KOG0547|consen 365 KRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAYIQLCCALYRQH 442 (606)
T ss_pred HHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHHH
Confidence 333445555555555555554433 23344444444444455555555555555533 33 2233333333444555
Q ss_pred chHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCC--CCC-------chhH-HHHHHHHHhcCChHH
Q 005881 394 AIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLS--SKN-------LVSW-NTMLVGYAQHGLGRE 463 (672)
Q Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-------~~~~-~~li~~~~~~g~~~~ 463 (672)
.++.+...|+..++. ++..+.+|+.....+...++++.|.+.|+... +|. +.++ +--+..+.-.+++..
T Consensus 443 k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~ 521 (606)
T KOG0547|consen 443 KIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQ 521 (606)
T ss_pred HHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHH
Confidence 555666666555543 34456666777777777777777777776654 222 1111 001111223477888
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHhH
Q 005881 464 ALEIYSMMQENKIKPND-NTFIGVLSACVHIGLVEEGWHYFNSMI 507 (672)
Q Consensus 464 A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~ 507 (672)
|.+++++..+ +.|.. ..|..|...-...|+.++|+++|+...
T Consensus 522 a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 522 AENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8888888877 45554 467788888888888888888888765
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.19 E-value=2.7e-09 Score=102.33 Aligned_cols=212 Identities=15% Similarity=0.069 Sum_probs=146.2
Q ss_pred CchHHHHHHHHHHHhc-CCCCc--ccHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhcCChHHHHH
Q 005881 393 PAIEWGKQTHCCIVKP-GFDSN--VVIGSALVDMYAKCGRLNDARKVFDHLSS---KNLVSWNTMLVGYAQHGLGREALE 466 (672)
Q Consensus 393 ~~~~~a~~~~~~~~~~-~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 466 (672)
+..+.+..-+..++.. ...|+ ...+..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|.+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3445555555555543 22222 34566777788899999999999988763 455689999999999999999999
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhC-C-
Q 005881 467 IYSMMQENKIKPND-NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSS-P- 543 (672)
Q Consensus 467 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~- 543 (672)
.|++..+ +.|+. .++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++. .
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999998 46664 5778888888899999999999998873 4554332222233445677899999999653 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-------cCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 005881 544 IEPNKVVWRCLLSGCKTHKDLVLGRYAAEKIL-------STDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKSL 613 (672)
Q Consensus 544 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 613 (672)
..|+...| .+ .....|+...+ ..++.+. ++.|+.+.+|..++.+|.+.|++++|...|++..+.++
T Consensus 195 ~~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 22332222 22 22234444333 2333332 45566778899999999999999999999998876443
No 71
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=1.9e-09 Score=96.69 Aligned_cols=229 Identities=15% Similarity=0.087 Sum_probs=140.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCC
Q 005881 350 LIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGR 429 (672)
Q Consensus 350 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 429 (672)
+..+|.+.|.+.+|.+.|+.-... .|-..||..+-.+|.+...+..|..++.+-.+. ++-++.........+...++
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHh
Confidence 344444444444444444444433 233333333333333333333333333332221 11122222334444555667
Q ss_pred HHHHHHHHhhCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHh
Q 005881 430 LNDARKVFDHLSS---KNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSM 506 (672)
Q Consensus 430 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 506 (672)
.++|.++++...+ .++.....+..+|...++++-|+.+|+++++.|+ -+...|..+.-+|.-.++++-++.-|++.
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 7777777776653 3344445555667777777777777777777774 45566777777777777777777776665
Q ss_pred HHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHH
Q 005881 507 IRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHI 586 (672)
Q Consensus 507 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 586 (672)
... .-.|+ --..+|-.+.......||+..|.+.|+-++..+|++..++.
T Consensus 385 lst-at~~~------------------------------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealn 433 (478)
T KOG1129|consen 385 LST-ATQPG------------------------------QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALN 433 (478)
T ss_pred Hhh-ccCcc------------------------------hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHH
Confidence 421 11111 12345666666677889999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCC
Q 005881 587 MLSNVYAEANMWDETAKVRKIMKEKSL 613 (672)
Q Consensus 587 ~l~~~~~~~g~~~~a~~~~~~~~~~~~ 613 (672)
+|+-+-.+.|+.++|..+++......+
T Consensus 434 NLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 434 NLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred hHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 999999999999999999998776443
No 72
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=7.4e-07 Score=87.10 Aligned_cols=429 Identities=13% Similarity=0.057 Sum_probs=217.9
Q ss_pred HHHHHcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHH--HHHHHH--h
Q 005881 48 ISGFSQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSACASRGDARSGKEIHGRMYRSGLELNSHVSNC--LINMYG--K 123 (672)
Q Consensus 48 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~~--~ 123 (672)
+.-+...|++++|.+...++...+ +-+...+..-+-++...+.++.|..+.+ ..+. ..+++. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHH
Confidence 345566777888888888877654 4455667777777777788887774433 2221 111111 234444 5
Q ss_pred cCChHHHHHHhhccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhccCChHHHHHHHHH
Q 005881 124 CGLLSSAQFVFDASLERNSISWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAIS-EFSCASVLGACAVLGNLKVGMQIHSL 202 (672)
Q Consensus 124 ~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~ 202 (672)
.+..++|...++.....+..+...-...+.+.|++++|+++|+.+.+.+..-- ...-..++.+-. ..-..
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a---------~l~~~ 162 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA---------ALQVQ 162 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH---------hhhHH
Confidence 67888888888855555555666667778888888888888888876643321 111111111111 11111
Q ss_pred HHHh-cCCCcHHHHHHH---HHHhhcCCChhHHHHHHhcCC--------CCCcc----------hHHHHHHHHHhcCChh
Q 005881 203 VFKC-ALEFDKFVAMGL---INLYAKCEKLDLASRVFSNIQ--------LPDLT----------AWSALIGGYAQLGKAC 260 (672)
Q Consensus 203 ~~~~-~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~~~--------~~~~~----------~~~~li~~~~~~~~~~ 260 (672)
..+. ...| ..+|..+ ...++..|++.+|+++++... ..|.. .---+.-.+...|+.+
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 1111 1122 2233322 334556788888888887661 11110 1112334566789999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHH---HHhhccCCchh--HHHHHHHHH-----------HhCCCCchHHHHHHHHHHH
Q 005881 261 EAIDLFVKMFSSGLMPSEVTFSYVL---GAFADVKETIG--GRQLHSLII-----------KMGFSSFTFVANTVLDFYS 324 (672)
Q Consensus 261 ~a~~~~~~m~~~~~~p~~~t~~~ll---~~~~~~~~~~~--a~~~~~~~~-----------~~~~~~~~~~~~~li~~~~ 324 (672)
+|..++....... .+|........ -+.....++-. ....++... ...-......-+.++.+|
T Consensus 242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~- 319 (652)
T KOG2376|consen 242 EASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF- 319 (652)
T ss_pred HHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999888764 34443222222 22222222211 111111110 000011111123334443
Q ss_pred ccCChHHHHHHHhhCCCCC-cccHHHHHHHHH--hcCChhHHHHHHHHHHhCCCCCC--hHHHHHHHHHHcCcCchHHHH
Q 005881 325 KCELLEESLKTFDEMDEHD-VVSWNALIAGHL--ASCHYGEAIELLKDMLFEGHCPN--LYTYSNILNISSDIPAIEWGK 399 (672)
Q Consensus 325 ~~~~~~~a~~~~~~~~~~~-~~~~~~li~~~~--~~~~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~ 399 (672)
.+.-+.+.++-...+... ...+.+++.... +...+.+|.+++...-+. .|. .......+......|+++.|.
T Consensus 320 -tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~ 396 (652)
T KOG2376|consen 320 -TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVAL 396 (652)
T ss_pred -hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 345566666666665522 333444443332 223466777777666654 333 233444455566777777777
Q ss_pred HHHH--------HHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCC------CCCch----hHHHHHHHHHhcCCh
Q 005881 400 QTHC--------CIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLS------SKNLV----SWNTMLVGYAQHGLG 461 (672)
Q Consensus 400 ~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~----~~~~li~~~~~~g~~ 461 (672)
+++. .+.+.+. .+.+..+++..|.+.++-+.|..++.+.. .+... +|.-....-.++|+-
T Consensus 397 ~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~ 474 (652)
T KOG2376|consen 397 EILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE 474 (652)
T ss_pred HHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch
Confidence 7777 3333333 33444566666776666666665555433 01111 222222223344555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHH
Q 005881 462 REALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHY 502 (672)
Q Consensus 462 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 502 (672)
++|..+++++.+.. ++|..+...++.+|++. +++.|..+
T Consensus 475 ~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 475 EEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred HHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHH
Confidence 55555555555532 34444555555555543 44444444
No 73
>PRK12370 invasion protein regulator; Provisional
Probab=99.12 E-value=1.9e-08 Score=105.72 Aligned_cols=243 Identities=12% Similarity=-0.007 Sum_probs=169.3
Q ss_pred ChhHHHHHHHHHHhCCCCCChH-HHHHHHHHHc---------CcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcC
Q 005881 359 HYGEAIELLKDMLFEGHCPNLY-TYSNILNISS---------DIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCG 428 (672)
Q Consensus 359 ~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (672)
..++|++.|++..+. .|+.. .+..+-.++. ..++.++|...++.+.+... .+...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcc
Confidence 356788888887754 55443 2322222221 33457788888888877653 25566777888888999
Q ss_pred CHHHHHHHHhhCCC--C-CchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHHHHHHHH
Q 005881 429 RLNDARKVFDHLSS--K-NLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDN-TFIGVLSACVHIGLVEEGWHYFN 504 (672)
Q Consensus 429 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~ 504 (672)
++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998763 3 3457888899999999999999999999984 56643 33344445666899999999998
Q ss_pred HhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 005881 505 SMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEPNKV-VWRCLLSGCKTHKDLVLGRYAAEKILSTDPED 581 (672)
Q Consensus 505 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 581 (672)
++... ..| ++..+..+..+|...|+.++|.+.++++ +..|+.. .++.+...+...| +.|...++++++..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 87632 235 4566778889999999999999999875 3445433 4455555667777 47777777776543322
Q ss_pred CchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 005881 582 TSAHIMLSNVYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 611 (672)
+.....+..+|.-.|+-+.+... +++.+.
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 22233477788888888877777 666553
No 74
>PRK12370 invasion protein regulator; Provisional
Probab=99.10 E-value=8.7e-09 Score=108.27 Aligned_cols=211 Identities=10% Similarity=0.006 Sum_probs=160.1
Q ss_pred CchHHHHHHHHHHHhcCCCCcccHHHHHHHHHH---------hcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhcCC
Q 005881 393 PAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYA---------KCGRLNDARKVFDHLSS---KNLVSWNTMLVGYAQHGL 460 (672)
Q Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 460 (672)
++.++|...++...+.... +...+..+..+|. ..+++++|...+++..+ .+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 3457888888888875432 2344555554443 23458899999998873 355678888888999999
Q ss_pred hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCch-HHHHHHHHHhhccCChHHHHHH
Q 005881 461 GREALEIYSMMQENKIKPND-NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRM-DHIASVVHLFACRGQTRRAYEF 538 (672)
Q Consensus 461 ~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~ 538 (672)
+++|...|++..+. .|+. ..+..+..++...|++++|...++++. .+.|+. ..+..++..+...|++++|.+.
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al---~l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECL---KLDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999995 5665 567788889999999999999999988 445643 3333445556678999999999
Q ss_pred HHhCC-C-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 005881 539 IKSSP-I-EPN-KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 539 ~~~~~-~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 611 (672)
+++.- . .|+ +..+..+...+...|+.++|...++++....|.+......++..|...| ++|...++.+.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 87642 2 354 4456667777889999999999999998899988888888888888888 4888888877653
No 75
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.09 E-value=1.2e-08 Score=95.39 Aligned_cols=164 Identities=12% Similarity=0.116 Sum_probs=138.5
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 005881 445 LVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVH 524 (672)
Q Consensus 445 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 524 (672)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHH
Confidence 3467778899999999999999999998853 3345677888889999999999999999887431 235677888999
Q ss_pred HhhccCChHHHHHHHHhCC---CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHH
Q 005881 525 LFACRGQTRRAYEFIKSSP---IEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDE 600 (672)
Q Consensus 525 ~~~~~g~~~~A~~~~~~~~---~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 600 (672)
.+...|++++|.+.+++.- ..| ....+..+...+...|++++|...++++++..|+++..+..++.++...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998742 112 345677777889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhC
Q 005881 601 TAKVRKIMKEK 611 (672)
Q Consensus 601 a~~~~~~~~~~ 611 (672)
|.+.+++..+.
T Consensus 188 A~~~~~~~~~~ 198 (234)
T TIGR02521 188 ARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 76
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.07 E-value=2.5e-05 Score=78.44 Aligned_cols=529 Identities=13% Similarity=0.077 Sum_probs=254.8
Q ss_pred cCCChhHHHHHhccCCCCCcch--HHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhcCCChhhHHHHH
Q 005881 22 KFSRINDAQKLFDEMPERNVIS--WSALISGFSQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSACASRGDARSGKEIH 99 (672)
Q Consensus 22 ~~g~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 99 (672)
....+.+|+.+++.+..+++.+ |..+...|+..|+++.|.++|.+.- .++-.+..|.+.|+|..|.++-
T Consensus 744 ~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHH
Confidence 3445555555555555433332 4444455566666666666655421 2444555566666666655554
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhhccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhh
Q 005881 100 GRMYRSGLELNSHVSNCLINMYGKCGLLSSAQFVFDASLERNSISWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFS 179 (672)
Q Consensus 100 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 179 (672)
++. .|.+.....|-+-..-+-+.|++.+|.+++-.+..|+ ..|..|-+.|..+..+++..+-... .-..|
T Consensus 815 ~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt 884 (1636)
T KOG3616|consen 815 EEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDT 884 (1636)
T ss_pred HHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHH
Confidence 322 2333344445444455555566666666665555553 2355566666666666655443221 11335
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHHHhcCCCCCc-----chHH-------
Q 005881 180 CASVLGACAVLGNLKVGMQIHSLVFKCALEFDKFVAMGLINLYAKCEKLDLASRVFSNIQLPDL-----TAWS------- 247 (672)
Q Consensus 180 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~------- 247 (672)
...+-.-+-..|++..|..-|-+. .-|.+-+++|...+-+++|.++-+.-.-.|. ..|.
T Consensus 885 ~~~f~~e~e~~g~lkaae~~flea---------~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggda 955 (1636)
T KOG3616|consen 885 HKHFAKELEAEGDLKAAEEHFLEA---------GDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDA 955 (1636)
T ss_pred HHHHHHHHHhccChhHHHHHHHhh---------hhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHH
Confidence 555666667777777776655433 2345566777777777777776654332111 1111
Q ss_pred ------------HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCchhHHHHHHHHHHhCC------
Q 005881 248 ------------ALIGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVKETIGGRQLHSLIIKMGF------ 309 (672)
Q Consensus 248 ------------~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------ 309 (672)
.-|+..+..+.++-|+++-+-..+.. .|... ..+...+...|.++.|.+-+-+.++.+-
T Consensus 956 avkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~vh--lk~a~~ledegk~edaskhyveaiklntynitwc 1032 (1636)
T KOG3616|consen 956 AVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGEVH--LKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWC 1032 (1636)
T ss_pred HHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Cccch--hHHhhhhhhccchhhhhHhhHHHhhcccccchhh
Confidence 11222233333333433333222211 11111 1112223456677777666555554321
Q ss_pred --CCchHHH---------HHHHHHHHccCChHHHHHHHhhCCCCCc--ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 005881 310 --SSFTFVA---------NTVLDFYSKCELLEESLKTFDEMDEHDV--VSWNALIAGHLASCHYGEAIELLKDMLFEGHC 376 (672)
Q Consensus 310 --~~~~~~~---------~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 376 (672)
.|+.+-. ...+.++.+.+++..|.++-+.-. +|. ..+.--..+-...|++.+|..++-+.. +
T Consensus 1033 qavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~-~~~l~dv~tgqar~aiee~d~~kae~fllran----k 1107 (1636)
T KOG3616|consen 1033 QAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHC-EDLLADVLTGQARGAIEEGDFLKAEGFLLRAN----K 1107 (1636)
T ss_pred hcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhC-hhhhHHHHhhhhhccccccchhhhhhheeecC----C
Confidence 0111000 112334444555555554433221 111 112222222233444444444333222 2
Q ss_pred CChHHHHHHHHHHcCcCchHHHHHHHH----------------HHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhC
Q 005881 377 PNLYTYSNILNISSDIPAIEWGKQTHC----------------CIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHL 440 (672)
Q Consensus 377 p~~~t~~~ll~~~~~~~~~~~a~~~~~----------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 440 (672)
|+. .++.+...+-+..|.++.+ ...+.|-. .+..+-.-..-+-+.|++.+|...+-++
T Consensus 1108 p~i-----~l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~gar-gvd~fvaqak~weq~gd~rkav~~~lki 1181 (1636)
T KOG3616|consen 1108 PDI-----ALNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKGAR-GVDGFVAQAKEWEQAGDWRKAVDALLKI 1181 (1636)
T ss_pred Cch-----HHHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhcccc-ccHHHHHHHHHHHhcccHHHHHHHHhhh
Confidence 322 1222222232322222211 11222211 2223333444455667777776666555
Q ss_pred CCC---------------------------CchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 005881 441 SSK---------------------------NLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHI 493 (672)
Q Consensus 441 ~~~---------------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 493 (672)
... |.....+...++...|..+.|.+++-.+-. -...+.++++.
T Consensus 1182 nrdst~nd~l~e~~~~kaadl~ikfl~~d~nme~i~aa~~al~~~~~~e~aael~l~f~~---------~keaida~~~~ 1252 (1636)
T KOG3616|consen 1182 NRDSTDNDALAEHCTEKAADLSIKFLMGDENMEVIGAAGGALDEAGCHEAAAELLLLFDL---------SKEAIDAFCEA 1252 (1636)
T ss_pred ccCCCCcHHHHHHHHHHHHhhhhhhcCCccchhhHHhcchhhhcccccHHHHHHHHHhhh---------HHHHHHHHHhH
Confidence 321 111222223333444555555554422211 12345677777
Q ss_pred CcHHHHHHHHHHh---------------HHhhCCC---CchHHHHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHH
Q 005881 494 GLVEEGWHYFNSM---------------IRDHGIS---PRMDHIASVVHLFACRGQTRRAYEFIKSSPIEPNKVVWRCLL 555 (672)
Q Consensus 494 g~~~~a~~~~~~~---------------~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 555 (672)
..+.+|.++-+++ .+..|-- .+.+ ..+-++++...+++++|++--++...+|-..-|-++.
T Consensus 1253 eewakakqvake~~p~~~~~idk~yke~lknegkl~eli~vd-viaaidl~ien~qwdk~idtak~qnykpil~kyva~y 1331 (1636)
T KOG3616|consen 1253 EEWAKAKQVAKELDPEMEDEIDKHYKEFLKNEGKLDELIDVD-VIAAIDLMIENDQWDKAIDTAKKQNYKPILDKYVALY 1331 (1636)
T ss_pred HHHHHHHHHHHHhCchhhHHHHHHHHHHHhccCccccccchh-HHHHHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHH
Confidence 7777776654433 2111111 1122 2345788899999999999988877788777776666
Q ss_pred HH-HHhcCCHHHHHHHHHHHh-cCCCCCCchHHHHH-HHHHhcC-ChHHHH
Q 005881 556 SG-CKTHKDLVLGRYAAEKIL-STDPEDTSAHIMLS-NVYAEAN-MWDETA 602 (672)
Q Consensus 556 ~~-~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~-~~~~~~g-~~~~a~ 602 (672)
.+ +.+.|+..+++.++++-- ..+|.|...|-.+. +++++-| +..+|.
T Consensus 1332 aa~li~~~d~aq~lal~~q~ga~anpanfniyk~i~ed~lakpgt~~~eay 1382 (1636)
T KOG3616|consen 1332 AAHLIHEGDLAQALALLEQHGAPANPANFNIYKLIFEDMLAKPGTNCAEAY 1382 (1636)
T ss_pred HHHHHhcCcHHHHHHHHHHhCCCCCcccccHHHHHHHHHhcCCCcchHHHH
Confidence 66 567799999999988763 46777777766443 3444443 444443
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.06 E-value=7.9e-08 Score=96.11 Aligned_cols=125 Identities=10% Similarity=0.093 Sum_probs=79.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHhhccCcHHHHHHHHHHhHHhh-----CCCCc-hH
Q 005881 451 MLVGYAQHGLGREALEIYSMMQEN---KIKPND----NTFIGVLSACVHIGLVEEGWHYFNSMIRDH-----GISPR-MD 517 (672)
Q Consensus 451 li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~ 517 (672)
++..+...+++++|..++.+..+. -+.++. .++..|...+.+.|++++|.++|++++... +..+. ..
T Consensus 331 ~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~ 410 (508)
T KOG1840|consen 331 LAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK 410 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence 344444445555555544443321 122332 357777777777777777777777766432 11222 35
Q ss_pred HHHHHHHHhhccCChHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005881 518 HIASVVHLFACRGQTRRAYEFIKSS--------PIEPNK-VVWRCLLSGCKTHKDLVLGRYAAEKIL 575 (672)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 575 (672)
.++.|...|.+.+++++|.++|.+. +..|+. .+|..|...|...|+++.|.++.++++
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 6677777777777777777776542 233443 478889999999999999999998886
No 78
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=5.1e-06 Score=77.73 Aligned_cols=258 Identities=12% Similarity=0.002 Sum_probs=175.3
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHH----HHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHH
Q 005881 342 HDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYT----YSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIG 417 (672)
Q Consensus 342 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 417 (672)
.|+.....+...+...|+.++|+..|++.+.. .|+..+ |..+ +...|+.+....+...+....-. +...|
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~~~~-ta~~w 303 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVL---LGQEGGCEQDSALMDYLFAKVKY-TASHW 303 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHH---HHhccCHhhHHHHHHHHHhhhhc-chhhh
Confidence 46677788888999999999999999987753 444332 2222 34567777776666666543211 11111
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCch---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhcc
Q 005881 418 SALVDMYAKCGRLNDARKVFDHLSSKNLV---SWNTMLVGYAQHGLGREALEIYSMMQENKIKPND-NTFIGVLSACVHI 493 (672)
Q Consensus 418 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~ 493 (672)
-.-........+++.|..+-++..+.|.. .|-.-...+...|++++|.-.|+..+. +.|.. .+|..|+.+|...
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhh
Confidence 11122233456788888888777644433 343334567788899999988988877 45544 6899999999999
Q ss_pred CcHHHHHHHHHHhHHhhCCCCchHHHHHHH-HHhh-ccCChHHHHHHHHh-CCCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 005881 494 GLVEEGWHYFNSMIRDHGISPRMDHIASVV-HLFA-CRGQTRRAYEFIKS-SPIEPNKV-VWRCLLSGCKTHKDLVLGRY 569 (672)
Q Consensus 494 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~-~~~~p~~~-~~~~l~~~~~~~g~~~~a~~ 569 (672)
|+..+|.-.-+...+. +..+..+...+. ..+. ...--|+|.+++++ +.++|+.. ....+...|...|..++++.
T Consensus 382 ~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 382 KRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred chHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHH
Confidence 9999888776665532 222444444442 2222 23345778888865 56778654 56667777888999999999
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 570 AAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 570 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
++++.+...| |...+..|++++...+.+++|.+.|.....
T Consensus 460 LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 460 LLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9999999988 667888999999999999999998887653
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.05 E-value=7.5e-06 Score=81.24 Aligned_cols=442 Identities=13% Similarity=0.013 Sum_probs=225.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHH
Q 005881 155 CGEHVHGLKIFLLSRKSGVAISEFSCASVLGACAVLGNLKVGMQIHSLVFKCALEFDKFVAMGLINLYAKCEKLDLASRV 234 (672)
Q Consensus 155 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 234 (672)
.+++...+++.+...+. ..-...|....--.+...|+.++|....+..++..+ .+.++|..+.-.+....++++|.+.
T Consensus 20 ~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHHH
Confidence 34455555555554442 111122222222223445555555555555444322 2445566555555566666666666
Q ss_pred HhcCC---CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHhhccCCchhHHHHHHHHHHhCC-
Q 005881 235 FSNIQ---LPDLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPS-EVTFSYVLGAFADVKETIGGRQLHSLIIKMGF- 309 (672)
Q Consensus 235 ~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~- 309 (672)
+.... ..|...|..+--.-++.++++.....-....+. .|+ ...|..+..+.--.|+...|..+++...+...
T Consensus 98 y~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 65543 234445555444445555555555554444443 222 23344444455555666666666666665442
Q ss_pred CCchHHHHHHH------HHHHccCChHHHHHHHhhCCCC--Ccc-cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChH
Q 005881 310 SSFTFVANTVL------DFYSKCELLEESLKTFDEMDEH--DVV-SWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLY 380 (672)
Q Consensus 310 ~~~~~~~~~li------~~~~~~~~~~~a~~~~~~~~~~--~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 380 (672)
.|+...+.... ....+.|.++.|.+.+...... |-. .-.+-..-+.+.++.++|..++..++.. .||..
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~ 253 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNL 253 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhH
Confidence 33333332221 2234566777777766655431 211 2223345567778888888888888766 67777
Q ss_pred HHHHHHHHHc-CcCchHHHH-HHHHHHHhcC---CCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-chhHHHHHHH
Q 005881 381 TYSNILNISS-DIPAIEWGK-QTHCCIVKPG---FDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSKN-LVSWNTMLVG 454 (672)
Q Consensus 381 t~~~ll~~~~-~~~~~~~a~-~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~ 454 (672)
-|.-.+..+. ...+.-++. .++....+.- ..|-....+ ++ ....-.+....++....+.. +.++..+..-
T Consensus 254 ~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpls-vl---~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL 329 (700)
T KOG1156|consen 254 DYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLS-VL---NGEELKEIVDKYLRPLLSKGVPSVFKDLRSL 329 (700)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHH-Hh---CcchhHHHHHHHHHHHhhcCCCchhhhhHHH
Confidence 6666555444 233322332 4444433221 111100000 00 01111222222333322222 2233333333
Q ss_pred HHhcCChHHHHHHHHHHHH----CC----------CCCCHH--HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCc-hH
Q 005881 455 YAQHGLGREALEIYSMMQE----NK----------IKPNDN--TFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPR-MD 517 (672)
Q Consensus 455 ~~~~g~~~~A~~~~~~m~~----~g----------~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~ 517 (672)
|-.....+-..++.-.+.. .| -+|... |+..+...+-+.|+++.|..+++..+ +..|+ ++
T Consensus 330 yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliE 406 (700)
T KOG1156|consen 330 YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIE 406 (700)
T ss_pred HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHH
Confidence 3222211111111111111 11 134443 45566777888999999999998877 56776 47
Q ss_pred HHHHHHHHhhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-------chHH--
Q 005881 518 HIASVVHLFACRGQTRRAYEFIKSSP--IEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDT-------SAHI-- 586 (672)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~-- 586 (672)
.|..=...+...|.+++|..++++.. ..||...-.--+.-..+.+..++|..+.-+--+-+-+-. -.|.
T Consensus 407 ly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~ 486 (700)
T KOG1156|consen 407 LYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQL 486 (700)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhH
Confidence 78788888999999999999997642 234444333344445677888888888776654432100 1122
Q ss_pred HHHHHHHhcCChHHHHHHHHHHh
Q 005881 587 MLSNVYAEANMWDETAKVRKIMK 609 (672)
Q Consensus 587 ~l~~~~~~~g~~~~a~~~~~~~~ 609 (672)
-=+.+|.++|+|.+|.+=|..+.
T Consensus 487 E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 487 EDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hhhHHHHHHHHHHHHHHHHhhHH
Confidence 23556888888888888766554
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.04 E-value=7.1e-08 Score=92.56 Aligned_cols=232 Identities=9% Similarity=-0.047 Sum_probs=146.4
Q ss_pred ChhHHHHHHHHHHhCC-CCCC--hHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHH
Q 005881 359 HYGEAIELLKDMLFEG-HCPN--LYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARK 435 (672)
Q Consensus 359 ~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 435 (672)
..+.++.-+.+++... ..|+ ...|...-..+...|+.+.|...+...++... .+...++.+...|...|++++|.+
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3445555555555321 1121 12333444455566666666666666655432 245677888889999999999999
Q ss_pred HHhhCCC--C-CchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCC
Q 005881 436 VFDHLSS--K-NLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGI 512 (672)
Q Consensus 436 ~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 512 (672)
.|+...+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|..... ..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~ 195 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KL 195 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hC
Confidence 9998863 3 3567888888999999999999999999984 56654222222234456789999999976542 22
Q ss_pred CCchHHHHHHHHHhhccCChHHHHHHHHh-CC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC-CCCchH
Q 005881 513 SPRMDHIASVVHLFACRGQTRRAYEFIKS-SP----IEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDP-EDTSAH 585 (672)
Q Consensus 513 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~----~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p-~~~~~~ 585 (672)
.|+... ..++..+......+++.+.+.+ .. ..| ....|..+...+...|++++|...|+++++.+| +...+.
T Consensus 196 ~~~~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~ 274 (296)
T PRK11189 196 DKEQWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHR 274 (296)
T ss_pred CccccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 333222 2333333222222334433332 21 112 234788888999999999999999999999997 555555
Q ss_pred HHHHHHHHhcC
Q 005881 586 IMLSNVYAEAN 596 (672)
Q Consensus 586 ~~l~~~~~~~g 596 (672)
..++.+....+
T Consensus 275 ~~~~e~~~~~~ 285 (296)
T PRK11189 275 YALLELALLGQ 285 (296)
T ss_pred HHHHHHHHHHh
Confidence 55655544433
No 81
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.04 E-value=2.8e-05 Score=78.97 Aligned_cols=100 Identities=15% Similarity=0.164 Sum_probs=57.8
Q ss_pred hCCCCchHHHHHHHHHHHccCChHHHHHHHhhCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHH
Q 005881 307 MGFSSFTFVANTVLDFYSKCELLEESLKTFDEMDE---HDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYS 383 (672)
Q Consensus 307 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~ 383 (672)
..+..+..+|..|.-+...+|++..+.+.|++... .....|+.+-..|...|....|..+++.-....-.|+..+.-
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34456667777777777777777777777777654 334467777777777777777777776655443234333322
Q ss_pred HH-HHHHc-CcCchHHHHHHHHHHH
Q 005881 384 NI-LNISS-DIPAIEWGKQTHCCIV 406 (672)
Q Consensus 384 ~l-l~~~~-~~~~~~~a~~~~~~~~ 406 (672)
.+ -..|. +.+..+++..+-..++
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai 421 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAI 421 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHH
Confidence 22 22232 3445555554444444
No 82
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=7.5e-06 Score=74.97 Aligned_cols=444 Identities=14% Similarity=0.067 Sum_probs=232.2
Q ss_pred HHHHHhcCChHHHHHHhhccCCC---CcccHHH-HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCh
Q 005881 118 INMYGKCGLLSSAQFVFDASLER---NSISWVS-LLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCASVLGACAVLGNL 193 (672)
Q Consensus 118 i~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 193 (672)
++-+....++..|+.+++--... ...+.+. +...+.+.|++++|+..|..+.+. -.|+......+..+..-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence 34455567788888777643221 1112222 334556778888888888877664 344555554444444556666
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 005881 194 KVGMQIHSLVFKCALEFDKFVAMGLINLYAKCEKLDLASRVFSNIQLPDLTAWSALIGGYAQLGKACEAIDLFVKMFSSG 273 (672)
Q Consensus 194 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 273 (672)
.+|+++-... +.++-.-..|.+...+.++-.+-..+-+.+.... .---++.+.....-.+.+|++++......
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d- 180 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD- 180 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 6666655432 2233334444455556666555555544444221 11122333333344566777777776654
Q ss_pred CCCChhhHHHHHHH-hhccCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCCCCCcccHHHHHH
Q 005881 274 LMPSEVTFSYVLGA-FADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMDEHDVVSWNALIA 352 (672)
Q Consensus 274 ~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~ 352 (672)
.|.-...+.-+.. |.+..-++-+.+++....+. ++.++...|.......
T Consensus 181 -n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~f---------------------------- 230 (557)
T KOG3785|consen 181 -NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLF---------------------------- 230 (557)
T ss_pred -ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHh----------------------------
Confidence 2444444433332 33444444444444443332 1222222222221111
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChHHHHH-HHH-HHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCH
Q 005881 353 GHLASCHYGEAIELLKDMLFEGHCPNLYTYSN-ILN-ISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRL 430 (672)
Q Consensus 353 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 430 (672)
+.=.-..|..-.+++...+-.. ..+.. +++ -+.-..+-+.|.+++--+.+. .|... -.|+-.|.+.+++
T Consensus 231 ---Rl~ngr~ae~E~k~ladN~~~~--~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEAR--lNL~iYyL~q~dV 301 (557)
T KOG3785|consen 231 ---RLINGRTAEDEKKELADNIDQE--YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEAR--LNLIIYYLNQNDV 301 (557)
T ss_pred ---hhhccchhHHHHHHHHhccccc--chhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHhh--hhheeeecccccH
Confidence 1111111111112222111000 00000 000 001112233444443333321 12111 2345568899999
Q ss_pred HHHHHHHhhCCCCCchhHHHHHHHHHhcC-------ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHHHHHH
Q 005881 431 NDARKVFDHLSSKNLVSWNTMLVGYAQHG-------LGREALEIYSMMQENKIKPNDN-TFIGVLSACVHIGLVEEGWHY 502 (672)
Q Consensus 431 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~ 502 (672)
.+|..+..++....+.-|-.-...++..| ...-|.+.|+-.-.++..-|.. --.++.+++.-..++++.+-+
T Consensus 302 qeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Y 381 (557)
T KOG3785|consen 302 QEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTY 381 (557)
T ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999887655554433333333433 2344555555544555444433 233445555556678999999
Q ss_pred HHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhCC-CC-CCHHHHHHHHHH-HHhcCCHHHHHHHHHHHhcCC-
Q 005881 503 FNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSSP-IE-PNKVVWRCLLSG-CKTHKDLVLGRYAAEKILSTD- 578 (672)
Q Consensus 503 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~- 578 (672)
++.+. .+ +.-|....-.+..+++..|.+.+|.++|-++. .+ .|..+|.+++.- |.+.+.++.|...+ ++.+
T Consensus 382 lnSi~-sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t 456 (557)
T KOG3785|consen 382 LNSIE-SY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNT 456 (557)
T ss_pred HHHHH-HH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCC
Confidence 88875 33 23344444468899999999999999997753 11 367778777665 55678888886654 3333
Q ss_pred CC-CCchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 005881 579 PE-DTSAHIMLSNVYAEANMWDETAKVRKIMKEKSL 613 (672)
Q Consensus 579 p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 613 (672)
|. ..+....+++.+.+++.+=-|.+.|+.+...++
T Consensus 457 ~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 457 PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 32 234455778889999999999999999876544
No 83
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.00 E-value=9.3e-06 Score=82.61 Aligned_cols=253 Identities=13% Similarity=0.131 Sum_probs=143.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-HHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHh
Q 005881 348 NALIAGHLASCHYGEAIELLKDMLFEGHCPNL-YTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAK 426 (672)
Q Consensus 348 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (672)
.-+...|...|++++|++++++.+.. .|+. ..|..-.+.+-..|++.+|....+....... -|..+-+-.+..+.+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHH
Confidence 44456677788888888888887766 5653 3455555677788888888888887776553 256666677777888
Q ss_pred cCCHHHHHHHHhhCCCCCch----------hH--HHHHHHHHhcCChHHHHHHHHHHHHC--CCC---CCHH--------
Q 005881 427 CGRLNDARKVFDHLSSKNLV----------SW--NTMLVGYAQHGLGREALEIYSMMQEN--KIK---PNDN-------- 481 (672)
Q Consensus 427 ~g~~~~A~~~~~~~~~~~~~----------~~--~~li~~~~~~g~~~~A~~~~~~m~~~--g~~---p~~~-------- 481 (672)
+|++++|.+++....+++.. .| .-...+|.+.|++..|++.|....+. .+. -|-.
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t 354 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMT 354 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhcc
Confidence 89999998888887754421 33 22456788888888888776655432 122 2222
Q ss_pred --HHHHHHHHhhccCc-------HHHHHHHHHHhHHhhCCCCch-----------HHHHHHHHHh---hccCChHHHHHH
Q 005881 482 --TFIGVLSACVHIGL-------VEEGWHYFNSMIRDHGISPRM-----------DHIASVVHLF---ACRGQTRRAYEF 538 (672)
Q Consensus 482 --~~~~ll~~~~~~g~-------~~~a~~~~~~~~~~~~~~p~~-----------~~~~~l~~~~---~~~g~~~~A~~~ 538 (672)
+|..++...-+... ...|.+++-.+-......... .-...+..-. .+....+++...
T Consensus 355 ~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~ 434 (517)
T PF12569_consen 355 LRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKA 434 (517)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 22223322111111 123334433332111000000 0000011000 011111111111
Q ss_pred H-H----------h----C--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHH
Q 005881 539 I-K----------S----S--PIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDET 601 (672)
Q Consensus 539 ~-~----------~----~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 601 (672)
- + . - +..||+..- .|+ ....-+++|.+.++.+.+..|++..+|..-..+|.+.|++--|
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~D~Dp~Ge-kL~---~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLa 510 (517)
T PF12569_consen 435 AKKEPKKQQNKSKKKEKVEPKKKDDDPLGE-KLL---KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLA 510 (517)
T ss_pred HhhhhhhhhccccccccccCCcCCCCccHH-HHh---cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHH
Confidence 0 0 0 0 112222211 111 2334678999999999999999999999999999999999888
Q ss_pred HHHHHH
Q 005881 602 AKVRKI 607 (672)
Q Consensus 602 ~~~~~~ 607 (672)
.+.+.+
T Consensus 511 LqaL~k 516 (517)
T PF12569_consen 511 LQALKK 516 (517)
T ss_pred HHHHHh
Confidence 877653
No 84
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.00 E-value=3.8e-05 Score=77.16 Aligned_cols=28 Identities=11% Similarity=0.171 Sum_probs=16.2
Q ss_pred CchHHHHHHHHHhcCChHHHHHHHHHHh
Q 005881 582 TSAHIMLSNVYAEANMWDETAKVRKIMK 609 (672)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 609 (672)
+..+..++..+...|++++|.+-+-...
T Consensus 995 ~~vhlk~a~~ledegk~edaskhyveai 1022 (1636)
T KOG3616|consen 995 GEVHLKLAMFLEDEGKFEDASKHYVEAI 1022 (1636)
T ss_pred ccchhHHhhhhhhccchhhhhHhhHHHh
Confidence 3455556666666666666665554443
No 85
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=5.5e-08 Score=94.71 Aligned_cols=216 Identities=15% Similarity=0.105 Sum_probs=157.0
Q ss_pred cCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhcCChHHHHHHH
Q 005881 392 IPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSS---KNLVSWNTMLVGYAQHGLGREALEIY 468 (672)
Q Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 468 (672)
.|++.+|.-.|+..++.. +-+...|-.|...-...++-..|+..+++..+ .|....-.|.-.|...|.-..|++.+
T Consensus 298 nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L 376 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKML 376 (579)
T ss_pred cCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 333444444444444332 12344555666666666777777777777664 34456666777888888888888888
Q ss_pred HHHHHCCCC-----C---CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHH
Q 005881 469 SMMQENKIK-----P---NDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIK 540 (672)
Q Consensus 469 ~~m~~~g~~-----p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (672)
+.-+....+ + +..+-.. ..+.+...+....++|-.+....+..+|+++...|.-+|--.|.+++|.+.|+
T Consensus 377 ~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~ 454 (579)
T KOG1125|consen 377 DKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFE 454 (579)
T ss_pred HHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHH
Confidence 877653210 0 0000000 12233334556677777777666767899999999999999999999999998
Q ss_pred h-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 541 S-SPIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 541 ~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
. +..+| |...|+-|...+....+.++|+.+|++++++.|+...+.+.|+-.|...|.++||.+.|-....
T Consensus 455 ~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 455 AALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 6 57788 5668999999999999999999999999999999999999999999999999999999877654
No 86
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=2.1e-05 Score=80.03 Aligned_cols=203 Identities=17% Similarity=0.102 Sum_probs=117.6
Q ss_pred cchhhHHHHHHhcCCChhHHHHHhccCCC-----------CCc-chHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCcc
Q 005881 10 VITYNHLLLMYVKFSRINDAQKLFDEMPE-----------RNV-ISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNYY 77 (672)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----------~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 77 (672)
-.+|..+.+++.+..+++-|.-.+-.|.+ .|. ..-..+.-.-..-|..++|..+|++-++
T Consensus 757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-------- 828 (1416)
T KOG3617|consen 757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR-------- 828 (1416)
T ss_pred hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH--------
Confidence 34677777777777777777777666653 111 1111122223445777777777777665
Q ss_pred cHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhhccCCC-----------------
Q 005881 78 TYVGAVSACASRGDARSGKEIHGRMYRSGLELNSHVSNCLINMYGKCGLLSSAQFVFDASLER----------------- 140 (672)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----------------- 140 (672)
|..+=+.|-..|.|++|.++-+.--+-.+ ..+|......+-..++.+.|++.|++...+
T Consensus 829 -~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~ 904 (1416)
T KOG3617|consen 829 -YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQ 904 (1416)
T ss_pred -HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHH
Confidence 34444556667777777776553322222 234444444455567777777777653321
Q ss_pred ------CcccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCcHHH
Q 005881 141 ------NSISWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCASVLGACAVLGNLKVGMQIHSLVFKCALEFDKFV 214 (672)
Q Consensus 141 ------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 214 (672)
|...|.--...+-..|+.+.|+.+|...+. |-++++..|-.|+.++|.++-++- -|...
T Consensus 905 Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AA 969 (1416)
T KOG3617|consen 905 YVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAA 969 (1416)
T ss_pred HHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHH
Confidence 233333333444456677777777766543 455556666677777776665542 24445
Q ss_pred HHHHHHHhhcCCChhHHHHHHhcCC
Q 005881 215 AMGLINLYAKCEKLDLASRVFSNIQ 239 (672)
Q Consensus 215 ~~~li~~~~~~g~~~~a~~~~~~~~ 239 (672)
.-.|.+.|-..|++.+|..+|.+..
T Consensus 970 cYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 970 CYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5567777777788777777776543
No 87
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=6e-05 Score=76.89 Aligned_cols=228 Identities=14% Similarity=0.070 Sum_probs=133.2
Q ss_pred HhcCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCchhHHHHHHHhHhC-C--------CCCCcccHHHHHHHHhcCC
Q 005881 20 YVKFSRINDAQKLFDEMPERNVISWSALISGFSQIGMPEVALNYFRLMVCC-V--------LEPNYYTYVGAVSACASRG 90 (672)
Q Consensus 20 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~--------~~p~~~~~~~ll~~~~~~~ 90 (672)
|.--|+.+.|.+-.+.++ +...|..+.+.|.+..+.+-|.-.+-.|... | -.|+ .+=..+.-.....|
T Consensus 738 yvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELG 814 (1416)
T ss_pred EEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHh
Confidence 445577777776665555 4556888988888888877765555544321 1 1122 22222333345778
Q ss_pred ChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhhccCCC-CcccHHHHHHHHHhcCChHHHHHHHHHHH
Q 005881 91 DARSGKEIHGRMYRSGLELNSHVSNCLINMYGKCGLLSSAQFVFDASLER-NSISWVSLLSSYCQCGEHVHGLKIFLLSR 169 (672)
Q Consensus 91 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (672)
.+++|+.++.+-.+. ..|=..|-..|.+++|.++-+.-..- --.||......+-..++.+.|++.|++..
T Consensus 815 MlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~ 885 (1416)
T KOG3617|consen 815 MLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAG 885 (1416)
T ss_pred hHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 889999988877664 34456677889999998887642221 12355555566666777888887776532
Q ss_pred hCC-------------------CCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCChhH
Q 005881 170 KSG-------------------VAISEFSCASVLGACAVLGNLKVGMQIHSLVFKCALEFDKFVAMGLINLYAKCEKLDL 230 (672)
Q Consensus 170 ~~g-------------------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 230 (672)
... -..|...|..--.-+-..|+.+.|..+|.... -|-+++...|-.|+.++
T Consensus 886 ~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~fs~VrI~C~qGk~~k 956 (1416)
T KOG3617|consen 886 VHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------DYFSMVRIKCIQGKTDK 956 (1416)
T ss_pred ChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------hhhhheeeEeeccCchH
Confidence 210 01122222222222334444444444444332 24455556666677777
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 005881 231 ASRVFSNIQLPDLTAWSALIGGYAQLGKACEAIDLFVKMF 270 (672)
Q Consensus 231 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 270 (672)
|-++-++- .|......+...|-..|++.+|...|.+.+
T Consensus 957 Aa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 957 AARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 77766554 345555566677777777777877777654
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.90 E-value=3.6e-07 Score=78.68 Aligned_cols=190 Identities=15% Similarity=0.118 Sum_probs=128.5
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccC
Q 005881 419 ALVDMYAKCGRLNDARKVFDHLSSKNL---VSWNTMLVGYAQHGLGREALEIYSMMQENKIKPND-NTFIGVLSACVHIG 494 (672)
Q Consensus 419 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g 494 (672)
.|.-.|...|++..|..-+++..+.|+ .+|..+...|.+.|+.+.|.+.|++... +.|+. ...+....-+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhCC
Confidence 455567777777777777777764332 3677777777777888888888877777 35554 45666666667777
Q ss_pred cHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005881 495 LVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKS-SPIEP-NKVVWRCLLSGCKTHKDLVLGRYAAE 572 (672)
Q Consensus 495 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 572 (672)
.+++|...|+.........--..+|..++-+..++|+.+.|.+++++ +...| .+.....+.......|++..|...++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 88888877777764322222346777777777778888888777765 33444 34455666666777778888877777
Q ss_pred HHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 573 KILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 573 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
+...-.+-........+.+-...|+-+.|.+.=.++..
T Consensus 198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 77666555666666677777777777777666555543
No 89
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.90 E-value=1.9e-06 Score=87.57 Aligned_cols=283 Identities=11% Similarity=0.059 Sum_probs=173.9
Q ss_pred HHHHccCChHHHHHHHhhCCC--CCcc-cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHc----C--
Q 005881 321 DFYSKCELLEESLKTFDEMDE--HDVV-SWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISS----D-- 391 (672)
Q Consensus 321 ~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~----~-- 391 (672)
..+...|++++|.+.++.-.. .|.. ........+.+.|+.++|..++..++.. .|+...|-..+..|. .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccc
Confidence 345667788888887776544 3433 3344556777788888888888888876 677766666655554 1
Q ss_pred cCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHH-HHHHHHhhCCCCCc-hhHHHHHHHHHhcCChHHHHHHHH
Q 005881 392 IPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLN-DARKVFDHLSSKNL-VSWNTMLVGYAQHGLGREALEIYS 469 (672)
Q Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~ 469 (672)
..+.+....+++.+...-.. ......+.-.+.....+. .+..++..+...++ .+++.|-..|.......-..+++.
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~--s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPR--SDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccHHHHHHHHHHHHHhCcc--ccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 22456666677766554321 111122221122212222 23333444444444 355555555554444444555555
Q ss_pred HHHHC----C----------CCCCHH--HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHhhccCCh
Q 005881 470 MMQEN----K----------IKPNDN--TFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPR-MDHIASVVHLFACRGQT 532 (672)
Q Consensus 470 ~m~~~----g----------~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 532 (672)
..... + -+|... ++..+...|...|++++|++++++.+ ...|+ ++.|..-+..|-+.|++
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI---~htPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI---EHTPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHCCCH
Confidence 54432 1 123332 44556667788999999999999887 44675 68899999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC--CCC-C----chH--HHHHHHHHhcCChHHH
Q 005881 533 RRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTD--PED-T----SAH--IMLSNVYAEANMWDET 601 (672)
Q Consensus 533 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~-~----~~~--~~l~~~~~~~g~~~~a 601 (672)
++|.+.++.. .+.+ |...-+-.+..+.+.|++++|...+..-..-+ |.. . -.| .--+.+|.+.|++..|
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999998753 2344 44444445556788899999999888775544 211 0 112 3667789999999999
Q ss_pred HHHHHHHhh
Q 005881 602 AKVRKIMKE 610 (672)
Q Consensus 602 ~~~~~~~~~ 610 (672)
.+-+..+.+
T Consensus 325 Lk~~~~v~k 333 (517)
T PF12569_consen 325 LKRFHAVLK 333 (517)
T ss_pred HHHHHHHHH
Confidence 988776653
No 90
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=8.6e-08 Score=86.32 Aligned_cols=220 Identities=12% Similarity=0.011 Sum_probs=174.9
Q ss_pred HHHHHHHHHccCChHHHHHHHhhCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHH-HHHHcCc
Q 005881 316 ANTVLDFYSKCELLEESLKTFDEMDE--HDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNI-LNISSDI 392 (672)
Q Consensus 316 ~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~ 392 (672)
-+.+..+|.+.|.+.+|.+.|+.-.+ |.+.+|-.|-.+|.+..++..|+.++.+-.+. .|-.+||..- .+.+...
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 36688899999999999999988764 77888888999999999999999999988765 7877777543 3566778
Q ss_pred CchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhcCChHHHHHHHH
Q 005881 393 PAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSS---KNLVSWNTMLVGYAQHGLGREALEIYS 469 (672)
Q Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 469 (672)
++.+.+.++++...+... .++.....+...|.-.++++-|.++++++.+ .++..|+.+.-+|...++++-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 889999999999887642 2444445566677788999999999999874 566789999999999999999999999
Q ss_pred HHHHCCCCCCHH--HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHh
Q 005881 470 MMQENKIKPNDN--TFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKS 541 (672)
Q Consensus 470 ~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (672)
+.+..--.|+.. .|..+.......|++..|.+.|+-... ..| ..+.++.|.-.-.+.|++++|..++..
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~---~d~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT---SDAQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc---cCcchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 998865556664 577777778888999999999987662 233 346777777777777777777777765
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.86 E-value=1.4e-07 Score=89.06 Aligned_cols=81 Identities=11% Similarity=0.047 Sum_probs=53.1
Q ss_pred CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCCh-HHHHHHHH
Q 005881 530 GQTRRAYEFIKSSP--IEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMW-DETAKVRK 606 (672)
Q Consensus 530 g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~ 606 (672)
+.+++|.-+|+++. ..+++.+.+.++.+....|++++|+..++++++.+|+++.+..+++-+....|+. +.+.+.+.
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 35566666665542 2345666666667777778888888888888888888877777777777777777 55666777
Q ss_pred HHhh
Q 005881 607 IMKE 610 (672)
Q Consensus 607 ~~~~ 610 (672)
+++.
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 7654
No 92
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.85 E-value=0.00016 Score=75.59 Aligned_cols=589 Identities=13% Similarity=0.002 Sum_probs=289.1
Q ss_pred hhhHHHHHHhcCCChhHHHHHhccCCC---CCcchHHHHHHHHHcCCCchhHHHHHHHhHhCC-CCCCcccHHHHHHHHh
Q 005881 12 TYNHLLLMYVKFSRINDAQKLFDEMPE---RNVISWSALISGFSQIGMPEVALNYFRLMVCCV-LEPNYYTYVGAVSACA 87 (672)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~ 87 (672)
.|..|...|+...+...|.+.|++.-+ .+..++......|++..+++.|..+.-..-+.. ...-...|....-.+.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL 573 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL 573 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence 577888888887788889999988776 456678888899999999999988833322211 0001122333334456
Q ss_pred cCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhhccCCCCcccHHHH---HHHHHhcCChHHHHHH
Q 005881 88 SRGDARSGKEIHGRMYRSGLELNSHVSNCLINMYGKCGLLSSAQFVFDASLERNSISWVSL---LSSYCQCGEHVHGLKI 164 (672)
Q Consensus 88 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~~ 164 (672)
..++...+..-|+...+..+ -|...|..|.++|.++|++..|.++|.+...-++.++-.. ....+..|.+.+|+..
T Consensus 574 ea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~ 652 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDA 652 (1238)
T ss_pred CccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 67788888888887777653 3777899999999999999999999987665444433322 2234567888888888
Q ss_pred HHHHHhC------CCCCChhhHHHHHHHHhccCChHHHHHHHH-------HHHHhcCCCcHHHHH---------------
Q 005881 165 FLLSRKS------GVAISEFSCASVLGACAVLGNLKVGMQIHS-------LVFKCALEFDKFVAM--------------- 216 (672)
Q Consensus 165 ~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~-------~~~~~~~~~~~~~~~--------------- 216 (672)
+...... +..--..++......+...|-...+...++ -.+.+....+...|-
T Consensus 653 l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~ 732 (1238)
T KOG1127|consen 653 LGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPS 732 (1238)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhccc
Confidence 7766542 111112233333333322232222222222 222221111111111
Q ss_pred --------HHHHHhhcCCCh---h---HHHHHHhcCC--CCCcchHHHHHHHHHh----c----CChhHHHHHHHHHHHC
Q 005881 217 --------GLINLYAKCEKL---D---LASRVFSNIQ--LPDLTAWSALIGGYAQ----L----GKACEAIDLFVKMFSS 272 (672)
Q Consensus 217 --------~li~~~~~~g~~---~---~a~~~~~~~~--~~~~~~~~~li~~~~~----~----~~~~~a~~~~~~m~~~ 272 (672)
.|..-.-+.+.. | -+.+.+-.-. ..+..+|..+...|.+ . .+...|+..+.+..+.
T Consensus 733 ~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L 812 (1238)
T KOG1127|consen 733 IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL 812 (1238)
T ss_pred chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH
Confidence 111111111111 0 0000000000 0123445444443333 1 1223455666555442
Q ss_pred CCCCChhhHHHHHHHhhccCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCCCC---CcccHHH
Q 005881 273 GLMPSEVTFSYVLGAFADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMDEH---DVVSWNA 349 (672)
Q Consensus 273 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~ 349 (672)
..+...+...+......|++.-+..-|-.-.... +....+|..+--.+.+..+++.|...|.....- |...|--
T Consensus 813 --~ann~~~WnaLGVlsg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG 889 (1238)
T KOG1127|consen 813 --CANNEGLWNALGVLSGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLG 889 (1238)
T ss_pred --hhccHHHHHHHHHhhccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHH
Confidence 3444555555555555555555544433322221 334556666666777888888888888887752 4455554
Q ss_pred HHHHHHhcCChhHHHHHHHHHH----hCCCCCChHHHHHHHHHHcCcCchHHHHH----H------HHHHHhcCCCCccc
Q 005881 350 LIAGHLASCHYGEAIELLKDML----FEGHCPNLYTYSNILNISSDIPAIEWGKQ----T------HCCIVKPGFDSNVV 415 (672)
Q Consensus 350 li~~~~~~~~~~~A~~~~~~m~----~~g~~p~~~t~~~ll~~~~~~~~~~~a~~----~------~~~~~~~~~~~~~~ 415 (672)
.....-..|+.-++..+|..-- ..|-.|+..-+.....-....|+.+.-.. + ...... +.+.+..
T Consensus 890 ~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~-~~p~~~f 968 (1238)
T KOG1127|consen 890 EALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFL-GHPQLCF 968 (1238)
T ss_pred HHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh-cCcchhH
Confidence 4444556677777777776521 12333443333333333334443332211 1 111111 2333445
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCchhHHHH----HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005881 416 IGSALVDMYAKCGRLNDARKVFDHLS-----SKNLVSWNTM----LVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGV 486 (672)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 486 (672)
.|.......-+.+...+|.+...+.. +-+...||.. .+.++..|.++.|..-+..... ..+......-
T Consensus 969 Ay~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~ 1045 (1238)
T KOG1127|consen 969 AYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTD 1045 (1238)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhh
Confidence 55555555555566666666555543 2344445432 2334445555544433221111 1111111111
Q ss_pred HHHhhccCcHHHHHHHHHHhHHhhCCCCch-HHHHHHHHHhhccCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC
Q 005881 487 LSACVHIGLVEEGWHYFNSMIRDHGISPRM-DHIASVVHLFACRGQTRRAYEFIKSS--PIEPNKVVWRCLLSGCKTHKD 563 (672)
Q Consensus 487 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~ 563 (672)
+.. .-.++++++.+.|+++..-..-..+. .....+.-....++..+.|...+-+. ..+|+..+...+...+.-..+
T Consensus 1046 l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~d 1124 (1238)
T KOG1127|consen 1046 LTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILDAD 1124 (1238)
T ss_pred HHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHHHHHHHHHHhhh
Confidence 111 23467777777777766332223332 22334444555666666666554221 123444444443333322222
Q ss_pred HHHHHHHHHHHh---cCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 005881 564 LVLGRYAAEKIL---STDPEDTSAHIMLSNVYAEANMWDETAKVRKIMK 609 (672)
Q Consensus 564 ~~~a~~~~~~~~---~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 609 (672)
-.....+.+++. +..--+-..-...--+|.+.|+-.-..+++++..
T Consensus 1125 a~~ssaileel~kl~k~e~~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~ 1173 (1238)
T KOG1127|consen 1125 AHGSSAILEELEKLLKLEWFCWPPGLLKELIYALQGRSVAVKKQIQRAV 1173 (1238)
T ss_pred hhhhHHHHHHHHHhhhhHHhccChhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 222222222222 2111122222334445666666666666666554
No 93
>PF12854 PPR_1: PPR repeat
Probab=98.84 E-value=3e-09 Score=63.12 Aligned_cols=34 Identities=47% Similarity=0.796 Sum_probs=31.9
Q ss_pred cCCCCCcchhhHHHHHHhcCCChhHHHHHhccCC
Q 005881 4 SGFHPNVITYNHLLLMYVKFSRINDAQKLFDEMP 37 (672)
Q Consensus 4 ~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 37 (672)
.|+.||+.+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4899999999999999999999999999999985
No 94
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2e-06 Score=83.36 Aligned_cols=166 Identities=14% Similarity=0.092 Sum_probs=110.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHH
Q 005881 420 LVDMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDN-TFIGVLSACVHIGLVEE 498 (672)
Q Consensus 420 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~ 498 (672)
+..+|.+.++.+.|...|++...+... -....+....+++++..+...- +.|+.. -...-...+.+.|++..
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHH
Confidence 444666677788888887775421111 1112233445555555555444 344442 22233566778889999
Q ss_pred HHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHh-CCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005881 499 GWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKS-SPIEPNKV-VWRCLLSGCKTHKDLVLGRYAAEKIL 575 (672)
Q Consensus 499 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~ 575 (672)
|+..|.+++.. .| |...|+...-+|.+.|.+..|++--+. +...|+.. .|.--..++....+++.|...|++++
T Consensus 377 Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 377 AVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888733 45 678888889999999998888876654 33455443 45545555666788999999999999
Q ss_pred cCCCCCCchHHHHHHHHHhc
Q 005881 576 STDPEDTSAHIMLSNVYAEA 595 (672)
Q Consensus 576 ~~~p~~~~~~~~l~~~~~~~ 595 (672)
+++|++..+...+.+++...
T Consensus 454 e~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 454 ELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred hcCchhHHHHHHHHHHHHHh
Confidence 99999888888887777753
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=2.9e-06 Score=75.71 Aligned_cols=415 Identities=11% Similarity=0.065 Sum_probs=200.8
Q ss_pred CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHHHhcCCC--CCcchHHH-
Q 005881 172 GVAISEFSCASVLGACAVLGNLKVGMQIHSLVFKCALEFDKFVAMGLINLYAKCEKLDLASRVFSNIQL--PDLTAWSA- 248 (672)
Q Consensus 172 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~- 248 (672)
|+....--+..++..+.+..++..+.+++..-.++.. .+....+.|..+|....++..|-..++++.. |...-|..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY 83 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY 83 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 3333333455566666666666666666655544332 1344455555666666666666666666553 33333332
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHh--hccCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHcc
Q 005881 249 LIGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAF--ADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKC 326 (672)
Q Consensus 249 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 326 (672)
-...+.+.+.+..|+.+...|... |+...-..-+.+. ...+++..+..+.++....| +..+.+.......+.
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecc
Confidence 134555666666666666666442 2221111111111 23344444444444332111 122222222233445
Q ss_pred CChHHHHHHHhhCCC----CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHH----HHHHHHHHcCcCchHHH
Q 005881 327 ELLEESLKTFDEMDE----HDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYT----YSNILNISSDIPAIEWG 398 (672)
Q Consensus 327 ~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~~~a 398 (672)
|+++.|.+-|+...+ .....||.-+.. .+.|+++.|++...+++++|++--+.. ..-.+.+ ...|+ -
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgN---t 232 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGN---T 232 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccc---h
Confidence 555555555554443 223334433322 233445555555555555544311100 0000000 00000 0
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005881 399 KQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSS-----KNLVSWNTMLVGYAQHGLGREALEIYSMMQE 473 (672)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 473 (672)
..++... -+..+|.-...+.+.|+++.|.+.+..|+. .|++|...+.-.- ..+++.+..+-+.-+..
T Consensus 233 ~~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~ 304 (459)
T KOG4340|consen 233 LVLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQ 304 (459)
T ss_pred HHHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHh
Confidence 0000000 001122222335578999999999999983 5777765543322 23455555555555555
Q ss_pred CCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHH
Q 005881 474 NKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSSPIEPNKVVWRC 553 (672)
Q Consensus 474 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 553 (672)
.+ +-...||..++-.||+..-++.|..++.+=....-.-.+...|+.|-......-..|+|.+-++.+...--......
T Consensus 305 ~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRkl 383 (459)
T KOG4340|consen 305 QN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKL 383 (459)
T ss_pred cC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 23457999999999999999999888753221000011334444433333456677888777655421000001111
Q ss_pred HHHH-HHhc-CC---HHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 554 LLSG-CKTH-KD---LVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 554 l~~~-~~~~-g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
.+.. -.++ ++ ...+..-|++.+++- .......++.|....++.-+.+.|+.-.+
T Consensus 384 Ai~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 384 AIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 1111 1122 22 233444455555542 24556778889999999999999997655
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.82 E-value=3.7e-07 Score=86.19 Aligned_cols=154 Identities=11% Similarity=0.081 Sum_probs=107.3
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----cCcHH
Q 005881 422 DMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVH----IGLVE 497 (672)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~ 497 (672)
.++...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+ +..|. +...+..++.. .+.+.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchhHH
Confidence 4466678888888887765 4455666677888889999999999999887 34443 34444444432 23588
Q ss_pred HHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 005881 498 EGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKS-SPIEP-NKVVWRCLLSGCKTHKDL-VLGRYAAEKI 574 (672)
Q Consensus 498 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~-~~a~~~~~~~ 574 (672)
+|..+|+++.++ ..+++.+.+.+..+....|++++|.+++++ +...| ++.++..++..+...|+. +.+.+...++
T Consensus 185 ~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 185 DAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 899999988643 356778888888889999999999988865 55555 455666666666777777 7788888888
Q ss_pred hcCCCCCC
Q 005881 575 LSTDPEDT 582 (672)
Q Consensus 575 ~~~~p~~~ 582 (672)
....|+++
T Consensus 263 ~~~~p~h~ 270 (290)
T PF04733_consen 263 KQSNPNHP 270 (290)
T ss_dssp HHHTTTSH
T ss_pred HHhCCCCh
Confidence 88888654
No 97
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.82 E-value=2e-05 Score=72.00 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=29.8
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 559 KTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 559 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
...|++.+|++...++++.+|+|..++...+.+|.-..++++|+.-++...+
T Consensus 318 ~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 318 REDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred cccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 3345556666666666666665555555555665555555555555555443
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.82 E-value=9.9e-06 Score=81.06 Aligned_cols=257 Identities=8% Similarity=-0.013 Sum_probs=155.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChH-HHHH---HHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhc
Q 005881 352 AGHLASCHYGEAIELLKDMLFEGHCPNLY-TYSN---ILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKC 427 (672)
Q Consensus 352 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-t~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (672)
..+...|++++|.+.+++..+. .|+.. .+.. ........+....+.+.+.. .....+........+...+...
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHc
Confidence 3456678888888888887765 34333 3321 11112223444455544443 1111122233344556678889
Q ss_pred CCHHHHHHHHhhCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHhhccCcHHHHHH
Q 005881 428 GRLNDARKVFDHLSS---KNLVSWNTMLVGYAQHGLGREALEIYSMMQENKI-KPND--NTFIGVLSACVHIGLVEEGWH 501 (672)
Q Consensus 428 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~g~~~~a~~ 501 (672)
|++++|.+.+++..+ .+...+..+...+...|++++|...+++...... .|+. ..|..+...+...|++++|..
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999988763 4456778888889999999999999998887421 1232 235567778889999999999
Q ss_pred HHHHhHHhhCCCCchHHH-H--HHHHHhhccCChHHHHHH--H-Hh---C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005881 502 YFNSMIRDHGISPRMDHI-A--SVVHLFACRGQTRRAYEF--I-KS---S-PIEPNKVVWRCLLSGCKTHKDLVLGRYAA 571 (672)
Q Consensus 502 ~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~---~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 571 (672)
.++.........+..... + .+...+...|....+.++ + .. . +.............++...|+.+.|...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 998875221111222111 1 233333444433333222 1 11 1 11111122234555677889999999999
Q ss_pred HHHhcCCC---------CCCchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 005881 572 EKILSTDP---------EDTSAHIMLSNVYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 572 ~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 611 (672)
+.+....- .........+.++...|++++|.+.+......
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88754221 12445567788899999999999999987653
No 99
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.76 E-value=8.5e-07 Score=82.67 Aligned_cols=179 Identities=14% Similarity=0.066 Sum_probs=109.9
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-c---hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HH
Q 005881 414 VVIGSALVDMYAKCGRLNDARKVFDHLSS--KN-L---VSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDN----TF 483 (672)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~ 483 (672)
...+-.+...+.+.|+++.|...|+++.. |+ . ..+..+..++...|++++|...++++.+. .|+.. ++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHHH
Confidence 33445555666667777777777776652 22 1 24555666777777777777777777663 33221 33
Q ss_pred HHHHHHhhcc--------CcHHHHHHHHHHhHHhhCCCCch-HHHHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHH
Q 005881 484 IGVLSACVHI--------GLVEEGWHYFNSMIRDHGISPRM-DHIASVVHLFACRGQTRRAYEFIKSSPIEPNKVVWRCL 554 (672)
Q Consensus 484 ~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 554 (672)
..+..++... |++++|.+.|+.+... .|+. ..+..+.... ..... . ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~----~~~~~---~--------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMD----YLRNR---L--------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHH----HHHHH---H--------HHHHHHH
Confidence 3344444433 5666677777666532 3332 1111111110 00000 0 0011245
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCC---CchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 005881 555 LSGCKTHKDLVLGRYAAEKILSTDPED---TSAHIMLSNVYAEANMWDETAKVRKIMKEKS 612 (672)
Q Consensus 555 ~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 612 (672)
...+...|+++.|...++++++..|++ +.++..++.+|.+.|++++|...++.+..+.
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 566888999999999999999997765 4688999999999999999999999887543
No 100
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.76 E-value=2.7e-05 Score=71.14 Aligned_cols=333 Identities=12% Similarity=0.070 Sum_probs=197.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHH---HhhccCCchhHHHHHHHHHHhCCCCchHHHH-HHHHHH
Q 005881 248 ALIGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVLG---AFADVKETIGGRQLHSLIIKMGFSSFTFVAN-TVLDFY 323 (672)
Q Consensus 248 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~ 323 (672)
-+-..+...|++..|+..|....+- |+..|-.+.+ .|...|....|..=+...++. +||-.... .-...+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 4455666677777777777766542 3333433332 344445544444444444432 33322111 112344
Q ss_pred HccCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHH
Q 005881 324 SKCELLEESLKTFDEMDEHDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHC 403 (672)
Q Consensus 324 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 403 (672)
.+.|.++.|..-|+.+...++.. +....++.+.-..++-+ .....+..+...|+...+.....
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhhHHHHHH
Confidence 55566666665555554322110 00011111111111111 12223344555677777777777
Q ss_pred HHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 005881 404 CIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLS---SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPND 480 (672)
Q Consensus 404 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 480 (672)
.+++.. +.+...+..-..+|...|++..|+.=+.... ..+..+..-+-..+...|+.+.++...++-++ +.||.
T Consensus 180 ~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdH 256 (504)
T KOG0624|consen 180 HLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDH 256 (504)
T ss_pred HHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcch
Confidence 776643 3356666677788888898888876665544 55666666677778888888888888888887 67887
Q ss_pred HH----HHHH---------HHHhhccCcHHHHHHHHHHhHHhhCCCCc-----hHHHHHHHHHhhccCChHHHHHHHHh-
Q 005881 481 NT----FIGV---------LSACVHIGLVEEGWHYFNSMIRDHGISPR-----MDHIASVVHLFACRGQTRRAYEFIKS- 541 (672)
Q Consensus 481 ~~----~~~l---------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~- 541 (672)
.. |..| +......+.+.++.+..+... ...|. ...+..+-.++...|++-+|++.-++
T Consensus 257 K~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vl---k~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 257 KLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVL---KNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---hcCCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 42 2211 112345567777777777666 23444 24455667788889999999888765
Q ss_pred CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCCce
Q 005881 542 SPIEPN-KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKSLKKDTGC 619 (672)
Q Consensus 542 ~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 619 (672)
+.+.|+ ..++..-..+|.....++.|+.-|+++.+.+|+|..+-.. .+.|.++.++..+|+.-+..|+
T Consensus 334 L~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG----------le~Akrlkkqs~kRDYYKILGV 402 (504)
T KOG0624|consen 334 LDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG----------LERAKRLKKQSGKRDYYKILGV 402 (504)
T ss_pred HhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH----------HHHHHHHHHHhccchHHHHhhh
Confidence 456775 6678778888999999999999999999999988654333 3556666666655555444443
No 101
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.76 E-value=5.1e-07 Score=80.38 Aligned_cols=118 Identities=13% Similarity=0.128 Sum_probs=94.3
Q ss_pred cCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCC--HHH
Q 005881 493 IGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSG-CKTHKD--LVL 566 (672)
Q Consensus 493 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~g~--~~~ 566 (672)
.++.+++...++...+ ..| +.+.|..++..|...|++++|.+.+++. ...| +...+..+..+ +...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 5666777777776653 344 6788888888999999999998888763 4556 55567777765 466676 599
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 005881 567 GRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKSL 613 (672)
Q Consensus 567 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 613 (672)
|.++++++++.+|+++.++..++..+.+.|++++|...++++.+...
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999876433
No 102
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.75 E-value=4e-05 Score=79.92 Aligned_cols=550 Identities=12% Similarity=0.003 Sum_probs=261.4
Q ss_pred hHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhcCCChhhHHHHHHHHHHhCC-CCChhHHHHHHHHH
Q 005881 43 SWSALISGFSQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSACASRGDARSGKEIHGRMYRSGL-ELNSHVSNCLINMY 121 (672)
Q Consensus 43 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~ 121 (672)
.|..|...|+..-+...|.+.|+...+.+ .-+......+...+++..+++.|..+.-..-+... ..-..-|...--.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 45556666665556666666666665543 23444556666666677777766666222111110 00011112222234
Q ss_pred HhcCChHHHHHHhhccCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH--HhccCChHHH
Q 005881 122 GKCGLLSSAQFVFDASLE---RNSISWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCASVLGA--CAVLGNLKVG 196 (672)
Q Consensus 122 ~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a 196 (672)
.+.++...|..-|+...+ .|...|..+..+|.+.|++..|+++|.+... +.|+.. |...-.+ -+..|...++
T Consensus 573 Lea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s~-y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLSK-YGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHhH-HHHHHHHHHHHHhhhHHHH
Confidence 555666666666665443 3667788899999999999999999988776 455533 3322222 2567888888
Q ss_pred HHHHHHHHHhcC------CCcHHHHHHHHHHhhcCCChhHHHHHHhcCCCCCcchHHH-HHHHHHhcCC----hhHHHHH
Q 005881 197 MQIHSLVFKCAL------EFDKFVAMGLINLYAKCEKLDLASRVFSNIQLPDLTAWSA-LIGGYAQLGK----ACEAIDL 265 (672)
Q Consensus 197 ~~~~~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-li~~~~~~~~----~~~a~~~ 265 (672)
...+..++...- .--..++..+...+.-.|-..+|..+|+.-. ..+.. ++...+.... ...|..+
T Consensus 650 ld~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi----e~f~~~l~h~~~~~~~~Wi~asdac~~ 725 (1238)
T KOG1127|consen 650 LDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI----ESFIVSLIHSLQSDRLQWIVASDACYI 725 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH----HHHHHHHHHhhhhhHHHHHHHhHHHHH
Confidence 887777654310 1111122222222222232333333332211 11111 1111100000 1123333
Q ss_pred HHHHHHCCCCCChhhHHHHHHHhhccCCchhHHHHHHHHHHh-----CCCCchHHH-HHHHHHHH---ccC----ChHHH
Q 005881 266 FVKMFSSGLMPSEVTFSYVLGAFADVKETIGGRQLHSLIIKM-----GFSSFTFVA-NTVLDFYS---KCE----LLEES 332 (672)
Q Consensus 266 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~-~~li~~~~---~~~----~~~~a 332 (672)
|-... .. .|+......+..-.-..+....-. ++-...+. .+..+...| |.-++.|. .++ +...|
T Consensus 726 f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d-~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~A 802 (1238)
T KOG1127|consen 726 FSQEE-PS-IVNMHYLIILSKQLEKTGALKKND-LLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTA 802 (1238)
T ss_pred HHHhc-cc-chHHHHHHHHHHHHHhcccCcchh-HHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHH
Confidence 33332 11 233222222222122222221100 11111110 011112222 22222221 122 22345
Q ss_pred HHHHhhCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcC
Q 005881 333 LKTFDEMDE---HDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPG 409 (672)
Q Consensus 333 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 409 (672)
...+....+ .+...||.|.-. ..-|.+.-|...|-+-+... +....+|..+--.|....+++.|...+...+...
T Consensus 803 i~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd 880 (1238)
T KOG1127|consen 803 IRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD 880 (1238)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC
Confidence 555554432 455667766544 44466666666555544331 2245566666666777888888888877776543
Q ss_pred CCCcccHHHHHHHHHHhcCCHHHHHHHHhhCC--------CCCchhHHHHHHHHHhcCChHHHHHHH----------HHH
Q 005881 410 FDSNVVIGSALVDMYAKCGRLNDARKVFDHLS--------SKNLVSWNTMLVGYAQHGLGREALEIY----------SMM 471 (672)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~----------~~m 471 (672)
+. +...|-.........|+.-++..+|..-. -++..-|-....-...+|+.++-+..- ++.
T Consensus 881 P~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~y 959 (1238)
T KOG1127|consen 881 PL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYY 959 (1238)
T ss_pred ch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHH
Confidence 21 22222222222234566666666665421 133334433334445555554433322 222
Q ss_pred HHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHH----HHHHHhhccCChHHHHHHHHhCCCCCC
Q 005881 472 QENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIA----SVVHLFACRGQTRRAYEFIKSSPIEPN 547 (672)
Q Consensus 472 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~p~ 547 (672)
.. |.+-+...|.......-+.+.+..|.+...++..-....-+...|+ .....+...|.++.|..-+...+..-+
T Consensus 960 f~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evd 1038 (1238)
T KOG1127|consen 960 FL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVD 1038 (1238)
T ss_pred Hh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHH
Confidence 22 2233345676666666677777777766665542222223333444 344556667777777666654443333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCch---HHHHHHHHHhcCChHHHHHHHHHH
Q 005881 548 KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSA---HIMLSNVYAEANMWDETAKVRKIM 608 (672)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~ 608 (672)
.....+-+.. .-.|+++.+...|++++.+.-++... ...++......+.-+.|...+-..
T Consensus 1039 Edi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~ 1101 (1238)
T KOG1127|consen 1039 EDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEV 1101 (1238)
T ss_pred HHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHH
Confidence 3333333332 34578888888888887765544332 223334444555566666554433
No 103
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.75 E-value=0.00035 Score=69.79 Aligned_cols=47 Identities=11% Similarity=0.016 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 564 LVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 564 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
.++|...+..+....+++..+|..-..+|.+.|++.-+.+..+....
T Consensus 641 l~ea~kf~~~l~~~~~~~~~~~iL~~ely~rk~k~~l~~~~~~~~~~ 687 (700)
T KOG1156|consen 641 LEEARKFLPNLQHKGKEKGETYILSFELYYRKGKFLLALACLNNAEG 687 (700)
T ss_pred HHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 56677777777777788888888889999999999888888877654
No 104
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.74 E-value=1.9e-07 Score=78.46 Aligned_cols=121 Identities=12% Similarity=0.035 Sum_probs=73.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-C
Q 005881 466 EIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-P 543 (672)
Q Consensus 466 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 543 (672)
.+|++.++ +.|+. +..+..++...|++++|...|+.+. ...| +...+..++.++.+.|++++|...|++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444 34443 3344555666677777777776665 3344 4566666666666666666666666542 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 005881 544 IEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYA 593 (672)
Q Consensus 544 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 593 (672)
..| +...|..+..++...|++++|...+++++++.|+++..+...+.+..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 344 45566666666667777777777777777777777776666655543
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.73 E-value=0.0011 Score=75.66 Aligned_cols=160 Identities=13% Similarity=0.100 Sum_probs=78.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHH-----HH
Q 005881 451 MLVGYAQHGLGREALEIYSMMQEN--KIKPN--DNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHI-----AS 521 (672)
Q Consensus 451 li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~ 521 (672)
+...+...|++++|...+.+.... ...+. ..++..+.......|+.++|...++..............+ ..
T Consensus 579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 658 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV 658 (903)
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH
Confidence 344445556666666666655432 11111 1233334445556666666666666554211111000000 01
Q ss_pred HHHHhhccCChHHHHHHHHhCCC-C-CCHH----HHHHHHHHHHhcCCHHHHHHHHHHHhcCCC------CCCchHHHHH
Q 005881 522 VVHLFACRGQTRRAYEFIKSSPI-E-PNKV----VWRCLLSGCKTHKDLVLGRYAAEKILSTDP------EDTSAHIMLS 589 (672)
Q Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~-~-p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~ 589 (672)
....+...|+.+.|.+++..... . .... .+..+..++...|+.++|...++++++... ....++..++
T Consensus 659 ~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la 738 (903)
T PRK04841 659 RLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLN 738 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 12333446666676666654321 0 0110 123344445666777777777776655321 1123455666
Q ss_pred HHHHhcCChHHHHHHHHHHhh
Q 005881 590 NVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 590 ~~~~~~g~~~~a~~~~~~~~~ 610 (672)
.+|.+.|+.++|...+.+..+
T Consensus 739 ~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 739 QLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 677777777777777766654
No 106
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.69 E-value=3.1e-06 Score=85.08 Aligned_cols=94 Identities=10% Similarity=0.040 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHh-CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHh
Q 005881 517 DHIASVVHLFACRGQTRRAYEFIKS-SPIEPN-KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAE 594 (672)
Q Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 594 (672)
.+|-.+.-+..+.++++.|.+.|.. ....|| ...|+.+-.+|.+.|+-.+|...++++++-+-++...|.+..-+..+
T Consensus 520 ~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvd 599 (777)
T KOG1128|consen 520 GTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVD 599 (777)
T ss_pred hHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhh
Confidence 3444444444444444444444432 223443 33566666666666666666666666666655556666666666666
Q ss_pred cCChHHHHHHHHHHhh
Q 005881 595 ANMWDETAKVRKIMKE 610 (672)
Q Consensus 595 ~g~~~~a~~~~~~~~~ 610 (672)
.|.|++|.+.+.++..
T Consensus 600 vge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 600 VGEFEDAIKAYHRLLD 615 (777)
T ss_pred cccHHHHHHHHHHHHH
Confidence 6666666666665544
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.68 E-value=4.4e-07 Score=76.30 Aligned_cols=107 Identities=9% Similarity=-0.043 Sum_probs=90.6
Q ss_pred HHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 005881 501 HYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKS-SPIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTD 578 (672)
Q Consensus 501 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 578 (672)
.++++.. .+.|+ .+..+...+...|++++|.+.|+. +...| +...|..+...+...|++++|...|+++++++
T Consensus 14 ~~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3444444 33454 466788899999999999999987 34566 67788899999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 005881 579 PEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKS 612 (672)
Q Consensus 579 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 612 (672)
|+++.++..++.++...|++++|.+.++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987643
No 108
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=3.2e-05 Score=75.27 Aligned_cols=218 Identities=10% Similarity=0.066 Sum_probs=149.5
Q ss_pred HHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCCCch---hH-------HHH
Q 005881 382 YSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSKNLV---SW-------NTM 451 (672)
Q Consensus 382 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~-------~~l 451 (672)
...+.++..+..+++.+.+-+...++.. .++.-++....+|...|...++........+..-. -| ..+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3445556666667777777777766655 34555566667777777777766665554322111 12 223
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCch-HHHHHHHHHhhccC
Q 005881 452 LVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRM-DHIASVVHLFACRG 530 (672)
Q Consensus 452 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 530 (672)
..+|.+.++++.|+..|.+.+..-..||..+ +....+++....+... -+.|.. .-...-+..+.+.|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhcc
Confidence 4466667888999999988776544544322 2233444444443332 345543 11222366778899
Q ss_pred ChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 005881 531 QTRRAYEFIKS-SPIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIM 608 (672)
Q Consensus 531 ~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 608 (672)
++..|+..+.+ +..+| |...|.....++.+.|.+..|+.-.+..++++|+....|..-+.++....+|++|.+.|...
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999976 34456 56678888888889999999999999999999999999999999999999999999999988
Q ss_pred hhCCC
Q 005881 609 KEKSL 613 (672)
Q Consensus 609 ~~~~~ 613 (672)
.+.+.
T Consensus 453 le~dp 457 (539)
T KOG0548|consen 453 LELDP 457 (539)
T ss_pred HhcCc
Confidence 76543
No 109
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=2.5e-05 Score=69.95 Aligned_cols=351 Identities=11% Similarity=0.015 Sum_probs=223.1
Q ss_pred CcccCCCCCcchhhHHHHHHhcCCChhHHHHHhccCCCC---CcchHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCcc
Q 005881 1 MITSGFHPNVITYNHLLLMYVKFSRINDAQKLFDEMPER---NVISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNYY 77 (672)
Q Consensus 1 m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 77 (672)
|...|+..-.--+.+.+..+.+..++++|++++....++ +....+.|..+|-...++..|.+.|+++... -|...
T Consensus 1 M~~~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~ 78 (459)
T KOG4340|consen 1 MAGSGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELE 78 (459)
T ss_pred CCcccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHH
Confidence 445566555556788888889999999999998877663 5556777788899999999999999999774 35544
Q ss_pred cHHH-HHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHHHHHH--HHhcCChHHHHHHhhccCC-CCcccHHHHHHHHH
Q 005881 78 TYVG-AVSACASRGDARSGKEIHGRMYRSGLELNSHVSNCLINM--YGKCGLLSSAQFVFDASLE-RNSISWVSLLSSYC 153 (672)
Q Consensus 78 ~~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~ 153 (672)
-|.. -.+.+-+.+.+..|..+...|... ++...-..-+.+ .-..+++..+..++++.+. .+..+.+-..-...
T Consensus 79 qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gClly 155 (459)
T KOG4340|consen 79 QYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLY 155 (459)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheee
Confidence 4432 235556778889999988877543 222222222222 2346888999999999884 56667666666678
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHH
Q 005881 154 QCGEHVHGLKIFLLSRKSGVAISEFSCASVLGACAVLGNLKVGMQIHSLVFKCALEFDKFVAMGLINLYAKCEKLDLASR 233 (672)
Q Consensus 154 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 233 (672)
+.|+++.|++-|+...+-|---....|+..+..+ +.++...|.....+++.+|+...+..-- |...+...
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgI---------Gm~tegiD 225 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGI---------GMTTEGID 225 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCc---------cceeccCc
Confidence 9999999999999988764334456777776554 5688899999999999988653221100 00000000
Q ss_pred HHhcCCCC-------CcchHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCChhhHHHHHHHhhccCCchhHHHHHHHHH
Q 005881 234 VFSNIQLP-------DLTAWSALIGGYAQLGKACEAIDLFVKMFSS-GLMPSEVTFSYVLGAFADVKETIGGRQLHSLII 305 (672)
Q Consensus 234 ~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 305 (672)
.+.+..+ -+..+|.-...+.+.++++.|.+.+.+|.-+ .-..|++|...+.-.- ..+++....+-+..+.
T Consensus 226 -vrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL 303 (459)
T KOG4340|consen 226 -VRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLL 303 (459)
T ss_pred -hhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHH
Confidence 0000000 0122344444566788888888888888543 2356777766543222 2334555555556666
Q ss_pred HhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCCCC-----CcccHHHHHHHHH-hcCChhHHHHHHHHH
Q 005881 306 KMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMDEH-----DVVSWNALIAGHL-ASCHYGEAIELLKDM 370 (672)
Q Consensus 306 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~li~~~~-~~~~~~~A~~~~~~m 370 (672)
..+. ....++..++-.||+..-++-|..++.+-... +...|+. +.++. ..-.+++|++-+..+
T Consensus 304 ~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 304 QQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred hcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHH
Confidence 5543 45567777888889988888888887765442 2223332 22222 234456665555444
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.60 E-value=5.8e-06 Score=88.85 Aligned_cols=197 Identities=13% Similarity=0.090 Sum_probs=161.2
Q ss_pred CcccHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HH
Q 005881 412 SNVVIGSALVDMYAKCGRLNDARKVFDHLSS--------KNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPND-NT 482 (672)
Q Consensus 412 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~ 482 (672)
.+...|-..|......++.+.|++++++..+ .-...|.+++......|.-+...++|+++.+. -|. ..
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~V 1532 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYTV 1532 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHHH
Confidence 3456677778888888999999999988763 12347888888888888888899999999883 344 45
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHh-CCCCCC---HHHHHHHHHHH
Q 005881 483 FIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKS-SPIEPN---KVVWRCLLSGC 558 (672)
Q Consensus 483 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~---~~~~~~l~~~~ 558 (672)
|..|..-|.+.+..++|.++++.|.++++ -....|..+++.+.++.+-+.|..++++ +..-|. .....-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88888899999999999999999998776 5678899999999999999999999875 444443 33344455556
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 005881 559 KTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKSL 613 (672)
Q Consensus 559 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 613 (672)
.+.||.++++.+|+-.+.-.|.-...|..+++.-.+.|+.+.++.+|++....++
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999999999999999999999999999877554
No 111
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.60 E-value=4.7e-06 Score=88.12 Aligned_cols=135 Identities=12% Similarity=0.060 Sum_probs=86.7
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHH
Q 005881 444 NLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDN-TFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIAS 521 (672)
Q Consensus 444 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 521 (672)
++..+-.|.....+.|++++|..+|+...+ +.||.. ....+...+.+.+++++|...+++.. ...| +......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHHH
Confidence 355666666666777777777777777776 466654 45566666777777777777776665 3345 3456666
Q ss_pred HHHHhhccCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 005881 522 VVHLFACRGQTRRAYEFIKSSP-IEPN-KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTS 583 (672)
Q Consensus 522 l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 583 (672)
+..++...|++++|.++|++.- ..|+ ...|.++..++...|+.++|...|+++++.......
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~ 223 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGAR 223 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchH
Confidence 6677777777777777776542 2333 456666666666777777777777777766543333
No 112
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.60 E-value=0.00084 Score=65.72 Aligned_cols=174 Identities=9% Similarity=0.038 Sum_probs=119.0
Q ss_pred hhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCC-cccHHHHHHHHHHhcCCHHHHHHHHh
Q 005881 360 YGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDS-NVVIGSALVDMYAKCGRLNDARKVFD 438 (672)
Q Consensus 360 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 438 (672)
.+.....++++...-..--..+|...++...+..-+..|+.+|..+.+.+..+ .+.+.++++..||. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 44555566665543222223457777777778888888888888888877766 77888888887765 67888888887
Q ss_pred hCCC--CCc-hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCcHHHHHHHHHHhHHhhC--
Q 005881 439 HLSS--KNL-VSWNTMLVGYAQHGLGREALEIYSMMQENKIKPND--NTFIGVLSACVHIGLVEEGWHYFNSMIRDHG-- 511 (672)
Q Consensus 439 ~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-- 511 (672)
--.+ +|. .--...+.-+...|+-..|..+|++....++.|+. ..|..++.--+..|++..+.++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 6552 333 33355667777788888888888888888777776 4788888888888888888887777664443
Q ss_pred CCCchHHHHHHHHHhhccCChHH
Q 005881 512 ISPRMDHIASVVHLFACRGQTRR 534 (672)
Q Consensus 512 ~~p~~~~~~~l~~~~~~~g~~~~ 534 (672)
..+....-..+++.|.-.+....
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred hcCCCChHHHHHHHHhhcccccc
Confidence 33333444445566655554433
No 113
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.59 E-value=1.3e-06 Score=71.84 Aligned_cols=119 Identities=11% Similarity=0.014 Sum_probs=96.5
Q ss_pred chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 005881 515 RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVY 592 (672)
Q Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 592 (672)
+.+..-.+...+...|++++|..+|+.+ .+.| +..-|..|...|...|++++|+..|.+++.++|+++..+..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3456666777888999999999999864 3566 5667888888899999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHhhCCCccCCceeEEEeCCEEEEEEeccccCCChHHHHHHHHHHHHHHH
Q 005881 593 AEANMWDETAKVRKIMKEKSLKKDTGCSWTELQNKMHYFSTSRFAQFQGIDLHEVMNQLSVHLF 656 (672)
Q Consensus 593 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 656 (672)
...|+.+.|.+.|+.... | . ..+|+...+.+..+.....+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~----------~-----------~--~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR----------I-----------C--GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHcCCHHHHHHHHHHHHH----------H-----------h--ccChhHHHHHHHHHHHHHHhh
Confidence 999999999999998764 2 1 235666666666555554443
No 114
>PLN02789 farnesyltranstransferase
Probab=98.58 E-value=1.8e-05 Score=75.81 Aligned_cols=182 Identities=14% Similarity=0.114 Sum_probs=122.4
Q ss_pred HHhcC-CHHHHHHHHhhCCC---CCchhHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHH
Q 005881 424 YAKCG-RLNDARKVFDHLSS---KNLVSWNTMLVGYAQHGLG--REALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVE 497 (672)
Q Consensus 424 ~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 497 (672)
+...| .++++...++.+.+ .+..+|+.....+.+.|+. ++++.+++++.+.. +-|...|.....++...|+++
T Consensus 81 L~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~ 159 (320)
T PLN02789 81 LEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWE 159 (320)
T ss_pred HHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHH
Confidence 33344 46777777776652 3444566555555555553 56788888888742 334457777777777888888
Q ss_pred HHHHHHHHhHHhhCCCC-chHHHHHHHHHhhcc---CCh----HHHHHHH-HhCCCCC-CHHHHHHHHHHHHhc----CC
Q 005881 498 EGWHYFNSMIRDHGISP-RMDHIASVVHLFACR---GQT----RRAYEFI-KSSPIEP-NKVVWRCLLSGCKTH----KD 563 (672)
Q Consensus 498 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~----~~A~~~~-~~~~~~p-~~~~~~~l~~~~~~~----g~ 563 (672)
++++.++++++. .| +...|+....++.+. |.. ++++++. +.+...| |...|+.+...+... +.
T Consensus 160 eeL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~ 236 (320)
T PLN02789 160 DELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVS 236 (320)
T ss_pred HHHHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccccc
Confidence 888888888743 33 455666665555443 222 4566666 4455667 566888888887763 44
Q ss_pred HHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcC------------------ChHHHHHHHHHHh
Q 005881 564 LVLGRYAAEKILSTDPEDTSAHIMLSNVYAEAN------------------MWDETAKVRKIMK 609 (672)
Q Consensus 564 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~~~ 609 (672)
..+|...+.+++..+|+++.+...|+++|+... ..++|.++++.+.
T Consensus 237 ~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 237 DPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred chhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 567889999999999999999999999998743 2366778877773
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.53 E-value=4.4e-06 Score=84.06 Aligned_cols=189 Identities=16% Similarity=0.178 Sum_probs=159.6
Q ss_pred CCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005881 409 GFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLS 488 (672)
Q Consensus 409 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 488 (672)
+++|-...-..+...+...|-...|..+|+++ ..|...|.+|+..|+..+|..+..+-.+ -+||+..|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 44555566677888999999999999999985 5788899999999999999999988888 3899999999999
Q ss_pred HhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHH
Q 005881 489 ACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKS-SPIEP-NKVVWRCLLSGCKTHKDLVL 566 (672)
Q Consensus 489 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~ 566 (672)
......-+++|+++++....+ .-..+.....+.++++++.+.++. +.+.| ...+|-.+..+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888888899999998765422 122233444568999999999975 55666 66789888888899999999
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 005881 567 GRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKS 612 (672)
Q Consensus 567 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 612 (672)
|.+.|...+.++|++...|.++..+|.+.|+-.+|...+.+..+-+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999887755
No 116
>PF12854 PPR_1: PPR repeat
Probab=98.53 E-value=1.2e-07 Score=56.15 Aligned_cols=32 Identities=34% Similarity=0.398 Sum_probs=21.7
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHhhcc
Q 005881 106 GLELNSHVSNCLINMYGKCGLLSSAQFVFDAS 137 (672)
Q Consensus 106 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 137 (672)
|+.||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666665
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.53 E-value=9.5e-06 Score=72.29 Aligned_cols=154 Identities=12% Similarity=0.111 Sum_probs=116.1
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHH
Q 005881 421 VDMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGW 500 (672)
Q Consensus 421 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 500 (672)
+-.|...|+++......+.+..+. ..+...++.++++..+++..+.. +.|...|..+...+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456778888877765554433221 01223567788888888888753 455567888999999999999999
Q ss_pred HHHHHhHHhhCCCC-chHHHHHHHHHh-hccCC--hHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005881 501 HYFNSMIRDHGISP-RMDHIASVVHLF-ACRGQ--TRRAYEFIKS-SPIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKI 574 (672)
Q Consensus 501 ~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 574 (672)
..|++.. .+.| +...+..+..++ .+.|+ .++|.+++++ +...| +...+..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999887 4566 678888888864 67777 5999999986 34566 5667888888899999999999999999
Q ss_pred hcCCCCCCchHH
Q 005881 575 LSTDPEDTSAHI 586 (672)
Q Consensus 575 ~~~~p~~~~~~~ 586 (672)
+++.|.+..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999987665443
No 118
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.46 E-value=0.00028 Score=70.59 Aligned_cols=263 Identities=12% Similarity=0.006 Sum_probs=162.8
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCChHHHHHH-HHHHcCcCchHHHHHHHHHHHhcCCCCcccHHH---HH
Q 005881 346 SWNALIAGHLASCHYGEAIELLKDMLFEGH-CPNLYTYSNI-LNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGS---AL 420 (672)
Q Consensus 346 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l 420 (672)
.|..+...+...|+.+.+.+.+.+..+... .++......+ ...+...|+++.+..+++...+.... +...+. ..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHhHHH
Confidence 445555566666777776666666544321 2232222221 22456788999999999998876432 333333 12
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcH
Q 005881 421 VDMYAKCGRLNDARKVFDHLSSKNL---VSWNTMLVGYAQHGLGREALEIYSMMQENKIKPN-DNTFIGVLSACVHIGLV 496 (672)
Q Consensus 421 ~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~ 496 (672)
.......+..+.+.+.+......++ .....+...+...|++++|.+.+++..+. .|+ ...+..+...+...|++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCH
Confidence 2222235666777777765433222 23445566788999999999999999995 455 45678888899999999
Q ss_pred HHHHHHHHHhHHhhCCCCch--HHHHHHHHHhhccCChHHHHHHHHhC-CCCC--CHHHH--H--HHHHHHHhcCCHHHH
Q 005881 497 EEGWHYFNSMIRDHGISPRM--DHIASVVHLFACRGQTRRAYEFIKSS-PIEP--NKVVW--R--CLLSGCKTHKDLVLG 567 (672)
Q Consensus 497 ~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~--~--~l~~~~~~~g~~~~a 567 (672)
++|...+++........|+. ..|..+...+...|++++|.+++++. ...| ..... + .++.-....|....+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 99999999887432222332 34667889999999999999999874 2233 21111 1 222333444543333
Q ss_pred HHH---HHHHhcCCCCC--CchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 005881 568 RYA---AEKILSTDPED--TSAHIMLSNVYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 568 ~~~---~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 611 (672)
... ........|.. ...-...+.++...|++++|.+.++.+...
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 332 22221111221 122236777788999999999999988653
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.42 E-value=3e-05 Score=68.73 Aligned_cols=156 Identities=10% Similarity=0.003 Sum_probs=98.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhc
Q 005881 449 NTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFAC 528 (672)
Q Consensus 449 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 528 (672)
..+-..+...|+-+....+..+.... .+-|......++......|++..|...|++... .-++|.+.|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 34455566666666666665554432 122223344466666677777777777776652 234466777777777777
Q ss_pred cCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 005881 529 RGQTRRAYEFIKS-SPIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRK 606 (672)
Q Consensus 529 ~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 606 (672)
.|++++|..-|.+ ..+.| ++...+.+...+.-.||.+.|..++..+....+.++..-.+|+.+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 7777777665543 34444 444566666667777777777777777777777777777777777777777777776655
Q ss_pred H
Q 005881 607 I 607 (672)
Q Consensus 607 ~ 607 (672)
+
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 3
No 120
>PLN02789 farnesyltranstransferase
Probab=98.40 E-value=2.1e-05 Score=75.39 Aligned_cols=188 Identities=11% Similarity=0.094 Sum_probs=136.7
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCC---CchhHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCc
Q 005881 421 VDMYAKCGRLNDARKVFDHLSSK---NLVSWNTMLVGYAQHG-LGREALEIYSMMQENKIKPND-NTFIGVLSACVHIGL 495 (672)
Q Consensus 421 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~ 495 (672)
-..+...++.++|....+.+.+. +..+|+.-...+...| ++++++..++++.+. .|+. .+|......+.+.|.
T Consensus 44 ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCc
Confidence 33445567888888888887743 3346666666666777 679999999999985 4444 456555444555565
Q ss_pred --HHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CC----
Q 005881 496 --VEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTH---KD---- 563 (672)
Q Consensus 496 --~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~---- 563 (672)
.+++..+++.+. ...| +...|....-++.+.|++++|++.++++ ...| |..+|+.....+.+. |.
T Consensus 122 ~~~~~el~~~~kal---~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 122 DAANKELEFTRKIL---SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred hhhHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccccc
Confidence 367788888877 4456 6788998999999999999999999874 3445 666887776665444 22
Q ss_pred HHHHHHHHHHHhcCCCCCCchHHHHHHHHHhc----CChHHHHHHHHHHhhCCC
Q 005881 564 LVLGRYAAEKILSTDPEDTSAHIMLSNVYAEA----NMWDETAKVRKIMKEKSL 613 (672)
Q Consensus 564 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~ 613 (672)
.+.......++++.+|+|.++|..+..++... ++..+|.+......+.++
T Consensus 199 ~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 199 RDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence 35678888899999999999999999999883 455778888877655333
No 121
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.38 E-value=5.3e-06 Score=69.55 Aligned_cols=100 Identities=15% Similarity=0.204 Sum_probs=74.9
Q ss_pred CCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHH
Q 005881 512 ISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIML 588 (672)
Q Consensus 512 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 588 (672)
..| +......++..+...|++++|.+.++.. ...| +...|..+...+...|++++|...++++++.+|.++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 344 3355566667777777777777777653 2344 556677777777788888888888888888888888888888
Q ss_pred HHHHHhcCChHHHHHHHHHHhhC
Q 005881 589 SNVYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 589 ~~~~~~~g~~~~a~~~~~~~~~~ 611 (672)
+.+|...|++++|.+.++...+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888877653
No 122
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.36 E-value=0.0022 Score=73.11 Aligned_cols=320 Identities=10% Similarity=-0.049 Sum_probs=169.2
Q ss_pred ccCChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHHHhcCC----CCC---c---c--hHHHHHHHHHhc
Q 005881 189 VLGNLKVGMQIHSLVFKCALEFDKFVAMGLINLYAKCEKLDLASRVFSNIQ----LPD---L---T--AWSALIGGYAQL 256 (672)
Q Consensus 189 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~---~---~--~~~~li~~~~~~ 256 (672)
..|+...+..++..+-......++.........+...|+.+++...+.... ..+ . . ....+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 445555555555443211111222223334444456677777766665432 110 1 0 111122334567
Q ss_pred CChhHHHHHHHHHHHCCCCCCh----hhHHHHHHHhhccCCchhHHHHHHHHHHhCC---C--CchHHHHHHHHHHHccC
Q 005881 257 GKACEAIDLFVKMFSSGLMPSE----VTFSYVLGAFADVKETIGGRQLHSLIIKMGF---S--SFTFVANTVLDFYSKCE 327 (672)
Q Consensus 257 ~~~~~a~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~~li~~~~~~~ 327 (672)
|++++|...+++....-...+. ...+.+-..+...|+++.|...+.......- . ........+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 8888888888776653111111 1223333445667888888777776654311 1 11223445556677788
Q ss_pred ChHHHHHHHhhCCC-------CC----cccHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCC--hHHHHHHHHHHcCc
Q 005881 328 LLEESLKTFDEMDE-------HD----VVSWNALIAGHLASCHYGEAIELLKDMLFEG--HCPN--LYTYSNILNISSDI 392 (672)
Q Consensus 328 ~~~~a~~~~~~~~~-------~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g--~~p~--~~t~~~ll~~~~~~ 392 (672)
+++.|...+++... ++ ...+..+...+...|++++|...+.+..... ..+. ...+..+.......
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 625 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR 625 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence 88888777665432 11 1123334445666788888888877765421 1121 22233334455667
Q ss_pred CchHHHHHHHHHHHhcCCCC-cccHH-----HHHHHHHHhcCCHHHHHHHHhhCCCCCch-------hHHHHHHHHHhcC
Q 005881 393 PAIEWGKQTHCCIVKPGFDS-NVVIG-----SALVDMYAKCGRLNDARKVFDHLSSKNLV-------SWNTMLVGYAQHG 459 (672)
Q Consensus 393 ~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~li~~~~~~g 459 (672)
|+.+.|...+.......... ....+ ...+..+...|+.+.|.+.+.....+... .+..+..++...|
T Consensus 626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcC
Confidence 78888877777664321100 00000 11123344567888888887665532211 1334556677778
Q ss_pred ChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 005881 460 LGREALEIYSMMQEN----KIKPND-NTFIGVLSACVHIGLVEEGWHYFNSMIR 508 (672)
Q Consensus 460 ~~~~A~~~~~~m~~~----g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 508 (672)
++++|..++++.... |..++. .+...+..++...|+.++|...+.+..+
T Consensus 706 ~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 706 QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888887776542 222222 2455566667778888888887777764
No 123
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.36 E-value=9.8e-05 Score=79.89 Aligned_cols=220 Identities=16% Similarity=0.087 Sum_probs=165.6
Q ss_pred hhHHHHHHHhhccCCchhHHHHHHHHHHh-CCC---CchHHHHHHHHHHHccCChHHHHHHHhhCCC--CCcccHHHHHH
Q 005881 279 VTFSYVLGAFADVKETIGGRQLHSLIIKM-GFS---SFTFVANTVLDFYSKCELLEESLKTFDEMDE--HDVVSWNALIA 352 (672)
Q Consensus 279 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~ 352 (672)
..|-.-|......++.++|+++.++++.. ++. --..+|.++++.-..-|.-+...++|++..+ ..-..|..|..
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLG 1538 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 34555666667777888888887777653 222 1234667777777777888888889988876 23346888899
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCC-CcccHHHHHHHHHHhcCCHH
Q 005881 353 GHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFD-SNVVIGSALVDMYAKCGRLN 431 (672)
Q Consensus 353 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~ 431 (672)
.|.+.+.+++|.++|+.|.+. ..-....|...+..+.+...-+.|..++.++.+.-.+ -......-.+++-.++|+.+
T Consensus 1539 iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch
Confidence 999999999999999999876 3356677888888899999989999999888875332 13444556677777899999
Q ss_pred HHHHHHhhCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhhccCcHHHH
Q 005881 432 DARKVFDHLSS---KNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDN--TFIGVLSACVHIGLVEEG 499 (672)
Q Consensus 432 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a 499 (672)
+++.+|+.... +-...|+..|..-.++|+.+.+..+|++....++.|-.. .|...+..-.+.|+-+.+
T Consensus 1618 RGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 99999999874 345689999999999999999999999999998888663 566666554555554433
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.35 E-value=3.8e-05 Score=68.10 Aligned_cols=133 Identities=11% Similarity=0.049 Sum_probs=110.2
Q ss_pred CCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhC--CCCCCHHHHHHH
Q 005881 477 KPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSS--PIEPNKVVWRCL 554 (672)
Q Consensus 477 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 554 (672)
.|+......+-.++...|+-+....+...... ....+......++....+.|++.+|...+.+. .-.||...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 56544336666777788888888887766542 22335667777999999999999999999874 334588899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 005881 555 LSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 555 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 611 (672)
..+|-+.|+.+.|...|.+++++.|+++....+++..|.-.|+.+.|..++......
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999887643
No 125
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.33 E-value=3.7e-05 Score=75.59 Aligned_cols=251 Identities=12% Similarity=0.050 Sum_probs=154.3
Q ss_pred HHccCChHHHHHHHhhCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChH-HHHHHHHHHcCcCchHHH
Q 005881 323 YSKCELLEESLKTFDEMDEH---DVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLY-TYSNILNISSDIPAIEWG 398 (672)
Q Consensus 323 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a 398 (672)
+.+.|++.+|.-.|+..... +...|--|......+++-..|+..+++..+. .|+.. ..-.|--.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHHHH
Confidence 45677788887777776543 3456777777777777777777777777654 55433 233333344445544455
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH-HCCCC
Q 005881 399 KQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQ-ENKIK 477 (672)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~ 477 (672)
...++..++..++- ..+.. -...+++.. + ..+..........++|-++. +.+..
T Consensus 373 l~~L~~Wi~~~p~y-----~~l~~-a~~~~~~~~--------------~-----~s~~~~~~l~~i~~~fLeaa~~~~~~ 427 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKY-----VHLVS-AGENEDFEN--------------T-----KSFLDSSHLAHIQELFLEAARQLPTK 427 (579)
T ss_pred HHHHHHHHHhCccc-----hhccc-cCccccccC--------------C-----cCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 55554444433210 00000 000000000 0 01111112233444554443 44544
Q ss_pred CCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHh-CCCCCCHH-HHHHH
Q 005881 478 PNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKS-SPIEPNKV-VWRCL 554 (672)
Q Consensus 478 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~-~~~~l 554 (672)
+|......|.-.|--.|.+++|+..|+.+. .++| |...|+.|+..++...+.++|+..+.+ +.++|+.+ ++..|
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNl 504 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNL 504 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhh
Confidence 666666667667778889999999999887 5577 567899999999999999999988875 56888755 67778
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCC----------CchHHHHHHHHHhcCChHHHHH
Q 005881 555 LSGCKTHKDLVLGRYAAEKILSTDPED----------TSAHIMLSNVYAEANMWDETAK 603 (672)
Q Consensus 555 ~~~~~~~g~~~~a~~~~~~~~~~~p~~----------~~~~~~l~~~~~~~g~~~~a~~ 603 (672)
.-.|...|.+++|...|-.++.+.+.+ ..+|..|-.++.-.++.|-+.+
T Consensus 505 gIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 505 GISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 888999999999999999888776541 1356666666666666654433
No 126
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.32 E-value=1.1e-05 Score=78.88 Aligned_cols=122 Identities=10% Similarity=0.097 Sum_probs=92.1
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHh
Q 005881 483 FIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKS-SPIEP-NKVVWRCLLSGCKT 560 (672)
Q Consensus 483 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~ 560 (672)
...|+..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++ +...| +...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 344555566667777777777776632 243 444466666667777777777654 23334 55556666677889
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 005881 561 HKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMK 609 (672)
Q Consensus 561 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 609 (672)
.++++.|+.+++++.++.|++...|..|+.+|.+.|++++|.-.++.++
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999998876
No 127
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.31 E-value=3.5e-05 Score=71.78 Aligned_cols=181 Identities=15% Similarity=0.031 Sum_probs=124.0
Q ss_pred ChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCC--cccHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-ch---hHH
Q 005881 378 NLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDS--NVVIGSALVDMYAKCGRLNDARKVFDHLSS--KN-LV---SWN 449 (672)
Q Consensus 378 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~---~~~ 449 (672)
....+......+...|+++.|...++.+.+..... ....+..+...|.+.|++++|...++.+.+ |+ .. ++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 45566677778889999999999999998765321 124567788899999999999999999863 32 22 455
Q ss_pred HHHHHHHhc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHH
Q 005881 450 TMLVGYAQH--------GLGREALEIYSMMQENKIKPNDN-TFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIA 520 (672)
Q Consensus 450 ~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 520 (672)
.+..++... |++++|.+.|+++... .|+.. ....+... .. . .... .....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~------~~~~---------~~~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---L------RNRL---------AGKEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---H------HHHH---------HHHHH
Confidence 566666654 7889999999999885 56543 22211111 00 0 0000 01122
Q ss_pred HHHHHhhccCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 005881 521 SVVHLFACRGQTRRAYEFIKSS----PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDP 579 (672)
Q Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 579 (672)
.+...|.+.|++++|...+++. +..| ....|..+..++...|+.++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4667788889999998888653 3233 345778888888999999999998887776655
No 128
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=0.00017 Score=63.49 Aligned_cols=167 Identities=17% Similarity=0.165 Sum_probs=118.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--CCch-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 005881 417 GSALVDMYAKCGRLNDARKVFDHLSS--KNLV-SWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHI 493 (672)
Q Consensus 417 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 493 (672)
+..++-+..-+|+.+.|...++.+.. |+.. .-..-..-+-..|++++|+++++..++.. +.|.+++..=+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 34445555567788888887777652 2221 11111223445788999999999998875 55667777767777777
Q ss_pred CcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHH
Q 005881 494 GLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTH---KDLVLGR 568 (672)
Q Consensus 494 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~a~ 568 (672)
|+.-+|++-+....+. +..|.+.|.-+.+.|...|++++|.=.++++ -+.| ++..+..+...+... .+...+.
T Consensus 134 GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8888888888887753 4668899999999999999999998888874 3566 555556666664333 3788899
Q ss_pred HHHHHHhcCCCCCCchHH
Q 005881 569 YAAEKILSTDPEDTSAHI 586 (672)
Q Consensus 569 ~~~~~~~~~~p~~~~~~~ 586 (672)
..|.+++++.|.+...+.
T Consensus 212 kyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHhChHhHHHHH
Confidence 999999999996655544
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.30 E-value=9.8e-05 Score=78.39 Aligned_cols=141 Identities=12% Similarity=0.106 Sum_probs=106.1
Q ss_pred CCCcccHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCc-hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHH
Q 005881 410 FDSNVVIGSALVDMYAKCGRLNDARKVFDHLS--SKNL-VSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDN-TFIG 485 (672)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ 485 (672)
...+...+-.|.....+.|+.++|..+++.+. .|+. ..+..++..+.+.+++++|+..+++.... .|+.. ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 44556777778888888899999999998887 3443 46677788888999999999999998884 67665 4566
Q ss_pred HHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC--CCCCCHHHHHHHH
Q 005881 486 VLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS--PIEPNKVVWRCLL 555 (672)
Q Consensus 486 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 555 (672)
+..++.+.|++++|..+|+++.. -.| +...+..+..++...|+.++|...|++. ...|....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR---QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 66777888999999999998874 234 4688888899999999999998888763 1234444444443
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.26 E-value=0.00012 Score=70.92 Aligned_cols=139 Identities=12% Similarity=0.115 Sum_probs=77.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHhhccCcHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHhhc
Q 005881 451 MLVGYAQHGLGREALEIYSMMQENKIKPNDNTFI-GVLSACVHIGLVEEGWHYFNSMIRDHGISPR-MDHIASVVHLFAC 528 (672)
Q Consensus 451 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 528 (672)
....+...|++++|+..++.++.. .||...|. .....+.+.++.++|.+.++++. ...|+ .-....+..+|.+
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~all~ 386 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHHHHHh
Confidence 334445556666666666666553 34444333 33344556666666666666655 33454 3445555666666
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 005881 529 RGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRK 606 (672)
Q Consensus 529 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 606 (672)
.|++.+|..+++.. .-.| |+..|..|..+|...|+..++... .+..|...|+|++|.....
T Consensus 387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLM 449 (484)
T ss_pred cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHH
Confidence 66666666666542 1222 555666666666666665555433 3344555667777777776
Q ss_pred HHhhC
Q 005881 607 IMKEK 611 (672)
Q Consensus 607 ~~~~~ 611 (672)
..+++
T Consensus 450 ~A~~~ 454 (484)
T COG4783 450 RASQQ 454 (484)
T ss_pred HHHHh
Confidence 66654
No 131
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.20 E-value=0.0079 Score=59.25 Aligned_cols=178 Identities=9% Similarity=0.028 Sum_probs=114.8
Q ss_pred hhHHHHHHHHHHhCCCCchHHHHHHHHHHHcc---CChHHHHHHHhhCCC----CCcccHHHHHHHHHhcCChhHHHHHH
Q 005881 295 IGGRQLHSLIIKMGFSSFTFVANTVLDFYSKC---ELLEESLKTFDEMDE----HDVVSWNALIAGHLASCHYGEAIELL 367 (672)
Q Consensus 295 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~ 367 (672)
+++..+++..+..-...+..+|..+.+.--.. ...+.....+++... .-..+|..++..-.+..-...|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 44555555555443333444444443322111 124444444444432 33456777777777777788888888
Q ss_pred HHHHhCCCCC-ChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCC---
Q 005881 368 KDMLFEGHCP-NLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSK--- 443 (672)
Q Consensus 368 ~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 443 (672)
.+..+.+..+ .....++++.-++ .++.+.|..+|+.-.+.- ..++.-....++.+...++-..|+.+|++....
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 8888887777 5566666666554 467778888887655542 233444467778888888888899999887643
Q ss_pred ---CchhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005881 444 ---NLVSWNTMLVGYAQHGLGREALEIYSMMQEN 474 (672)
Q Consensus 444 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 474 (672)
....|..++.--..-|+...++++-+++...
T Consensus 468 ~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 468 ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 2347888888888889999888888877653
No 132
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.20 E-value=4.8e-05 Score=74.38 Aligned_cols=127 Identities=11% Similarity=0.110 Sum_probs=105.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCc
Q 005881 416 IGSALVDMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGL 495 (672)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 495 (672)
...+|+..+...++++.|..+|+++.+.++.....++..+...++-.+|++++++.++.. +-|...+..-...|.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 345566777778999999999999998777777778888988999999999999999752 3344556666667889999
Q ss_pred HHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhCCCCC
Q 005881 496 VEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSSPIEP 546 (672)
Q Consensus 496 ~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 546 (672)
++.|+.+.+++. ...| +..+|..|+.+|...|++++|+..++.+|..|
T Consensus 250 ~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999999888 5577 56899999999999999999999999887554
No 133
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.00057 Score=60.73 Aligned_cols=141 Identities=14% Similarity=0.070 Sum_probs=73.3
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----cCcH
Q 005881 421 VDMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVH----IGLV 496 (672)
Q Consensus 421 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~ 496 (672)
...|+..|++++|.+.......-+....+ +..+.+..+.+-|.+.+++|.+ --+..|.+.|..++.+ .+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~---ided~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQ---IDEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHhccchhh
Confidence 34466667777777776663322222222 2334455566666666666665 2344455555554432 2345
Q ss_pred HHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 005881 497 EEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILS 576 (672)
Q Consensus 497 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 576 (672)
.+|.-+|++|.++ .. |.+.+.+..+..+...|++++|+.+++.++.
T Consensus 190 qdAfyifeE~s~k--~~--------------------------------~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 190 QDAFYIFEELSEK--TP--------------------------------PTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred hhHHHHHHHHhcc--cC--------------------------------CChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 5555555555421 23 4444444445555555555555555555555
Q ss_pred CCCCCCchHHHHHHHHHhcCChHH
Q 005881 577 TDPEDTSAHIMLSNVYAEANMWDE 600 (672)
Q Consensus 577 ~~p~~~~~~~~l~~~~~~~g~~~~ 600 (672)
.+|+++.+..+++-+-...|+-.+
T Consensus 236 kd~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 236 KDAKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred ccCCCHHHHHHHHHHHHHhCCChH
Confidence 555555555555555445554433
No 134
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.18 E-value=3.4e-06 Score=51.09 Aligned_cols=35 Identities=37% Similarity=0.615 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 005881 446 VSWNTMLVGYAQHGLGREALEIYSMMQENKIKPND 480 (672)
Q Consensus 446 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 480 (672)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.17 E-value=0.00037 Score=67.52 Aligned_cols=119 Identities=18% Similarity=0.172 Sum_probs=90.0
Q ss_pred HhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHh-CCCCCC-HHHHHHHHHHHHhcCCHH
Q 005881 489 ACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKS-SPIEPN-KVVWRCLLSGCKTHKDLV 565 (672)
Q Consensus 489 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~-~~~~~~l~~~~~~~g~~~ 565 (672)
.....|++++|+..++.+.. -.| |+..+....+.+...++.++|.+.+++ +...|+ ...+-.+..++.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~---~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA---AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 34556788888888888773 245 556666777888888888888888876 345675 556677777788888888
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 566 LGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 566 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
+|+..++....-+|+++..|..|+.+|...|+..+|...+-+...
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888877766543
No 136
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.13 E-value=4.1e-06 Score=50.71 Aligned_cols=35 Identities=31% Similarity=0.570 Sum_probs=29.3
Q ss_pred chHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCc
Q 005881 42 ISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNY 76 (672)
Q Consensus 42 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 76 (672)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36888888888888888888888888888888873
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.12 E-value=6.4e-05 Score=62.95 Aligned_cols=113 Identities=7% Similarity=0.026 Sum_probs=85.5
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-C
Q 005881 467 IYSMMQENKIKPND-NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-P 543 (672)
Q Consensus 467 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 543 (672)
.|++... ..|+. .....+...+...|++++|.+.|+.+.. ..| +...+..+...+...|++++|.+.+++. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA---YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555 35544 3456677777888899999998888763 234 6678888888888899999999888763 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCch
Q 005881 544 IEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSA 584 (672)
Q Consensus 544 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 584 (672)
..| +...+..+...+...|+.+.|...++++++++|++...
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 445 56677777788889999999999999999999977653
No 138
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.12 E-value=0.00042 Score=74.46 Aligned_cols=215 Identities=15% Similarity=0.129 Sum_probs=141.5
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHH-HHcCcCchHHHHHHHHHHHhcCCCCcccHHHHH
Q 005881 342 HDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILN-ISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSAL 420 (672)
Q Consensus 342 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 420 (672)
.+...|..|+..+...+++++|.++.+...+. .|+...+-.+.. .+.+.++...+..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 45567888999999999999999999977655 666554433322 34444444433332 22
Q ss_pred HHHHHhcCCHHHHHHHHhhCC--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHH
Q 005881 421 VDMYAKCGRLNDARKVFDHLS--SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEE 498 (672)
Q Consensus 421 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 498 (672)
++......++.-...+...+. ..+-..+..+..+|-+.|+.++|..+|+++++.. +-|....+.+...++.. ++++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 233333333322222222332 1223366778888999999999999999999854 33445788888888888 9999
Q ss_pred HHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhC----------------------CCCCCHHHHHHHHH
Q 005881 499 GWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSS----------------------PIEPNKVVWRCLLS 556 (672)
Q Consensus 499 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------------------~~~p~~~~~~~l~~ 556 (672)
|.+++.+.+.. |...+++.++.+++.++ +..--..++--+..
T Consensus 168 A~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~ 231 (906)
T PRK14720 168 AITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYE 231 (906)
T ss_pred HHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence 99988877643 23333444444443332 22223334445556
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 005881 557 GCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYA 593 (672)
Q Consensus 557 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 593 (672)
-|...++++++..+++.+++.+|.|..+..-++.+|.
T Consensus 232 ~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 232 PYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 6788899999999999999999999999999988877
No 139
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.10 E-value=0.021 Score=60.02 Aligned_cols=66 Identities=17% Similarity=0.276 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcCCH---HHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccC
Q 005881 551 WRCLLSGCKTHKDL---VLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKSLKKD 616 (672)
Q Consensus 551 ~~~l~~~~~~~g~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 616 (672)
-+.++..|++.+|. -+|+-+++..+..+|.|+..-..++.+|.-.|-+..|.++++.+.-+.|..+
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhc
Confidence 46677888888764 5677888899999999999999999999999999999999998876666444
No 140
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.09 E-value=8.2e-06 Score=58.77 Aligned_cols=64 Identities=19% Similarity=0.131 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcC-ChHHHHHHHHHHhh
Q 005881 547 NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEAN-MWDETAKVRKIMKE 610 (672)
Q Consensus 547 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 610 (672)
++..|..+...+...|++++|+..|+++++++|+++.++..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46678888899999999999999999999999999999999999999999 79999999998765
No 141
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.08 E-value=5.4e-06 Score=49.70 Aligned_cols=33 Identities=27% Similarity=0.448 Sum_probs=25.8
Q ss_pred chHHHHHHHHHcCCCchhHHHHHHHhHhCCCCC
Q 005881 42 ISWSALISGFSQIGMPEVALNYFRLMVCCVLEP 74 (672)
Q Consensus 42 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 74 (672)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 577788888888888888888888887777776
No 142
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.08 E-value=0.0075 Score=56.86 Aligned_cols=243 Identities=15% Similarity=0.101 Sum_probs=155.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHH
Q 005881 356 ASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARK 435 (672)
Q Consensus 356 ~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 435 (672)
-.|+++.|.+-|+.|... ...-...+..+.-...+.|+.+.|+++-+..-+.-.. -.....+.+...|..|+++.|++
T Consensus 132 ~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~Alk 209 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALK 209 (531)
T ss_pred hcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHH
Confidence 357777777777777642 0011112233333344667777777666655543321 23455677788888888888888
Q ss_pred HHhhCC-----CCCch--hHHHHHHHHH---hcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHhhccCcHHHHHHHHH
Q 005881 436 VFDHLS-----SKNLV--SWNTMLVGYA---QHGLGREALEIYSMMQENKIKPNDNT-FIGVLSACVHIGLVEEGWHYFN 504 (672)
Q Consensus 436 ~~~~~~-----~~~~~--~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~ 504 (672)
+++.-. ++++. .--.|+.+-+ -..+...|...-.+..+ +.||-+. -.....++.+.|+..++-.+++
T Consensus 210 Lvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE 287 (531)
T COG3898 210 LVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILE 287 (531)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHH
Confidence 887654 34432 1122222211 12356666666666555 6788753 4455677899999999999999
Q ss_pred HhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHh---C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 005881 505 SMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKS---S-PIEPN-KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDP 579 (672)
Q Consensus 505 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~---~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 579 (672)
.+. ...|.++.+... .+.+.|+ .+++-+++ + .++|| ..+...+..+....|++..|....+.+....|
T Consensus 288 ~aW---K~ePHP~ia~lY--~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p 360 (531)
T COG3898 288 TAW---KAEPHPDIALLY--VRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP 360 (531)
T ss_pred HHH---hcCCChHHHHHH--HHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc
Confidence 888 446666554322 2234444 34444332 1 34664 44666777888899999999999999999999
Q ss_pred CCCchHHHHHHHHHhc-CChHHHHHHHHHHhh
Q 005881 580 EDTSAHIMLSNVYAEA-NMWDETAKVRKIMKE 610 (672)
Q Consensus 580 ~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 610 (672)
..++|..|+++-... |+-.++...+-+...
T Consensus 361 -res~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 361 -RESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred -hhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 678899999997665 999999888876653
No 143
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.08 E-value=0.022 Score=59.74 Aligned_cols=217 Identities=13% Similarity=0.087 Sum_probs=99.4
Q ss_pred HcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHH--hcCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 005881 52 SQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSAC--ASRGDARSGKEIHGRMYRSGLELNSHVSNCLINMYGKCGLLSS 129 (672)
Q Consensus 52 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 129 (672)
...+++.+|+....++.+. .||.. |..++.++ .+.|..++|..+++.....+.. |..+...+-..|.+.++.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 3445566666666665543 24433 44444443 3566666666666655554433 55566666666666666666
Q ss_pred HHHHhhccCCC--CcccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcc-CC---------hHHHH
Q 005881 130 AQFVFDASLER--NSISWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCASVLGACAVL-GN---------LKVGM 197 (672)
Q Consensus 130 a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-~~---------~~~a~ 197 (672)
|..+++..... +......+..+|++.+.+.+-.+.--+|-+. ..-+...|-++++..... .. +.-|.
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 66666665443 2222333444555555444332222222221 122233333333322111 00 11233
Q ss_pred HHHHHHHHhc-CCCcHHHHHHHHHHhhcCCChhHHHHHHhc-----CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 005881 198 QIHSLVFKCA-LEFDKFVAMGLINLYAKCEKLDLASRVFSN-----IQLPDLTAWSALIGGYAQLGKACEAIDLFVKMFS 271 (672)
Q Consensus 198 ~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 271 (672)
...+.+++.+ ..-+..-...-...+...|+.++|..++.. ...-+...-+.-+..+...+++.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3333333332 111111111122333445666666666522 1122223333445556666666666666666666
Q ss_pred CC
Q 005881 272 SG 273 (672)
Q Consensus 272 ~~ 273 (672)
.|
T Consensus 255 k~ 256 (932)
T KOG2053|consen 255 KG 256 (932)
T ss_pred hC
Confidence 54
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.06 E-value=8.2e-06 Score=48.91 Aligned_cols=33 Identities=30% Similarity=0.546 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 005881 446 VSWNTMLVGYAQHGLGREALEIYSMMQENKIKP 478 (672)
Q Consensus 446 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 478 (672)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578999999999999999999999999988887
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.05 E-value=0.00022 Score=60.32 Aligned_cols=85 Identities=12% Similarity=0.081 Sum_probs=41.0
Q ss_pred HHHHhhccCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcC
Q 005881 522 VVHLFACRGQTRRAYEFIKSSP-IEPNK----VVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEAN 596 (672)
Q Consensus 522 l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 596 (672)
+...+...|++++|.+.|+... ..|++ .....+...+...|++++|+..++.. .-.+-.+..+..++++|.+.|
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCC
Confidence 3344444555555555544321 11221 12233344455556666666655442 222223445556666666666
Q ss_pred ChHHHHHHHHH
Q 005881 597 MWDETAKVRKI 607 (672)
Q Consensus 597 ~~~~a~~~~~~ 607 (672)
++++|...|+.
T Consensus 133 ~~~~A~~~y~~ 143 (145)
T PF09976_consen 133 DYDEARAAYQK 143 (145)
T ss_pred CHHHHHHHHHH
Confidence 66666666654
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.01 E-value=0.00039 Score=58.80 Aligned_cols=124 Identities=16% Similarity=0.127 Sum_probs=84.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCc--hHHHHH
Q 005881 448 WNTMLVGYAQHGLGREALEIYSMMQENKIKPND----NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPR--MDHIAS 521 (672)
Q Consensus 448 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~ 521 (672)
|..++..+ ..++...+...++.+.... |+. .....+...+...|++++|...|+.+... ...|. ......
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 44445544 4777888888888888753 333 23344556677888888888888888743 22222 124445
Q ss_pred HHHHhhccCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005881 522 VVHLFACRGQTRRAYEFIKSSPIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKIL 575 (672)
Q Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 575 (672)
|..++...|++++|+..++..+..+ .+..+......+...|+.++|+..|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 7778888899999988887754332 44455666677888999999999988764
No 147
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.0015 Score=58.23 Aligned_cols=141 Identities=13% Similarity=0.123 Sum_probs=96.5
Q ss_pred HHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCC-CchhHHHHHHHHHh----cC
Q 005881 385 ILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSK-NLVSWNTMLVGYAQ----HG 459 (672)
Q Consensus 385 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g 459 (672)
-...|...++++.|.+...... +....-.=+..+.+..+++.|...++.|.+- +-.+.+.|..++.+ .+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGE 187 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccch
Confidence 3345666777777766654411 1122222344566788899999999999864 44577777777654 34
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHH
Q 005881 460 LGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRR 534 (672)
Q Consensus 460 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 534 (672)
...+|.-+|++|-++ .+|+..+.+....++...|++++|..+++....+. ..++++...++-+-...|...+
T Consensus 188 k~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred hhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCChH
Confidence 688999999999886 68999999999999999999999999999887542 2245555555555444554433
No 148
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.99 E-value=2e-05 Score=55.92 Aligned_cols=59 Identities=20% Similarity=0.208 Sum_probs=52.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 005881 554 LLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKS 612 (672)
Q Consensus 554 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 612 (672)
+...+...|++++|+..++++++..|+++.++..++.++...|++++|...++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45567889999999999999999999999999999999999999999999999887643
No 149
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.98 E-value=6.6e-05 Score=67.95 Aligned_cols=92 Identities=18% Similarity=0.266 Sum_probs=49.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHhhccCCh
Q 005881 455 YAQHGLGREALEIYSMMQENKIKP-NDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPR-MDHIASVVHLFACRGQT 532 (672)
Q Consensus 455 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 532 (672)
+.+.+++.+|+..|.+.++ +.| |.+-|..-..+|++.|.++.|++-.+..+ .+.|. ...|..|..+|...|++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCcH
Confidence 4555666666666666666 333 33445555666666666666666555444 33442 34555555555555555
Q ss_pred HHHHHHHHh-CCCCCCHHHH
Q 005881 533 RRAYEFIKS-SPIEPNKVVW 551 (672)
Q Consensus 533 ~~A~~~~~~-~~~~p~~~~~ 551 (672)
++|.+.|++ +.+.|+..+|
T Consensus 166 ~~A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESY 185 (304)
T ss_pred HHHHHHHHhhhccCCCcHHH
Confidence 555555443 3444544444
No 150
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.93 E-value=0.00056 Score=73.55 Aligned_cols=209 Identities=11% Similarity=0.061 Sum_probs=147.9
Q ss_pred CCCC-ChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHH
Q 005881 374 GHCP-NLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSKNLVSWNTML 452 (672)
Q Consensus 374 g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 452 (672)
.+.| +...+..++..+...++++++.++.+...+... .....|-.+...+.+.++.+++..+ .++
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P-~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l 90 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHK-KSISALYISGILSLSRRPLNDSNLL-------------NLI 90 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-cceehHHHHHHHHHhhcchhhhhhh-------------hhh
Confidence 4445 445677788888888888888888886655432 2333333333356666665555443 234
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCC
Q 005881 453 VGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQ 531 (672)
Q Consensus 453 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 531 (672)
.......++..+..+...|.+ ..-+...+..+..+|-+.|+.++|..+++++.+ ..| ++...+.++..|... +
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~---~D~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVK---ADRDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhcccccchhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHh-h
Confidence 444445555444555555655 334445788899999999999999999999983 346 789999999999999 9
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCch--------------------HHHHHHH
Q 005881 532 TRRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSA--------------------HIMLSNV 591 (672)
Q Consensus 532 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~--------------------~~~l~~~ 591 (672)
+++|.+++.+. +..+...+++..+..+++++++.+|++... +..+-..
T Consensus 165 L~KA~~m~~KA------------V~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~ 232 (906)
T PRK14720 165 KEKAITYLKKA------------IYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEP 232 (906)
T ss_pred HHHHHHHHHHH------------HHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 99999998763 223555668888888888888888876544 2233466
Q ss_pred HHhcCChHHHHHHHHHHhhCCCc
Q 005881 592 YAEANMWDETAKVRKIMKEKSLK 614 (672)
Q Consensus 592 ~~~~g~~~~a~~~~~~~~~~~~~ 614 (672)
|.+.++|+++.++++.+.+...+
T Consensus 233 y~~~~~~~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 233 YKALEDWDEVIYILKKILEHDNK 255 (906)
T ss_pred HhhhhhhhHHHHHHHHHHhcCCc
Confidence 78888999999999999876554
No 151
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=0.0012 Score=58.20 Aligned_cols=162 Identities=12% Similarity=0.167 Sum_probs=124.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHH
Q 005881 447 SWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGV-LSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVH 524 (672)
Q Consensus 447 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 524 (672)
.|..++-+....|+.+.|...++++... + |.+.-...+ ..-+-..|++++|.++++.+.++ .| |..++..=+.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d---dpt~~v~~KRKlA 128 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED---DPTDTVIRKRKLA 128 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc---CcchhHHHHHHHH
Confidence 4555666777889999999999999886 3 555322222 11234568999999999999854 35 5566777777
Q ss_pred HhhccCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcC---ChH
Q 005881 525 LFACRGQTRRAYEFIKSS-P-IEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEAN---MWD 599 (672)
Q Consensus 525 ~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~ 599 (672)
++...|+.-+|++-+... . +-.|...|.-+...|...|+++.|.-.+++++=+.|.++-.+..+++++...| +.+
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 777788877887766442 1 33588999999999999999999999999999999999999999999987776 456
Q ss_pred HHHHHHHHHhhCCC
Q 005881 600 ETAKVRKIMKEKSL 613 (672)
Q Consensus 600 ~a~~~~~~~~~~~~ 613 (672)
-|.+.+.+..+-..
T Consensus 209 ~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 209 LARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHHhCh
Confidence 67777877766444
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.92 E-value=1.4e-05 Score=60.17 Aligned_cols=59 Identities=15% Similarity=0.142 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHH
Q 005881 548 KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKI 607 (672)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 607 (672)
...|..+...+.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|++++++
T Consensus 25 ~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 25 SAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 33444456666666777777777766 666666666666667777777777777777664
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.90 E-value=0.00015 Score=59.05 Aligned_cols=93 Identities=11% Similarity=0.018 Sum_probs=52.3
Q ss_pred HHHHHHHhhccCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---CchHHHHHH
Q 005881 519 IASVVHLFACRGQTRRAYEFIKSS-PIEPN----KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPED---TSAHIMLSN 590 (672)
Q Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 590 (672)
+..++..+.+.|++++|.+.++++ ...|+ ...+..+...+...|+++.|...+++++...|++ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444455555555555555432 11222 2234445555666666666766666666666653 345666666
Q ss_pred HHHhcCChHHHHHHHHHHhhC
Q 005881 591 VYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 591 ~~~~~g~~~~a~~~~~~~~~~ 611 (672)
++.+.|++++|.+.++.+.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666777777777766666543
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.90 E-value=0.00021 Score=70.49 Aligned_cols=102 Identities=13% Similarity=0.103 Sum_probs=62.3
Q ss_pred HHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 005881 487 LSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKD 563 (672)
Q Consensus 487 l~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 563 (672)
...+...|++++|+..|+++++ ..| +...|..+..+|.+.|++++|+..+++. .+.| +...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 3445566777777777776662 344 4456666666666667777776666542 3344 34455556666666677
Q ss_pred HHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 005881 564 LVLGRYAAEKILSTDPEDTSAHIMLSNV 591 (672)
Q Consensus 564 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 591 (672)
+++|+..++++++++|+++.....+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 7777777777777766666555554443
No 155
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.89 E-value=9.6e-05 Score=66.95 Aligned_cols=98 Identities=16% Similarity=0.113 Sum_probs=78.1
Q ss_pred HHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHh-CCCCCCHH-HHHHHHHHHHhcCCH
Q 005881 488 SACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKS-SPIEPNKV-VWRCLLSGCKTHKDL 564 (672)
Q Consensus 488 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~-~~~~l~~~~~~~g~~ 564 (672)
.-+.+.+++.+|+..|...+ .+.| |...|..-..+|.+.|.++.|++--+. +.+.|... +|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 35677889999999999887 6677 556677778889999999999876654 56777544 888888899999999
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHH
Q 005881 565 VLGRYAAEKILSTDPEDTSAHIML 588 (672)
Q Consensus 565 ~~a~~~~~~~~~~~p~~~~~~~~l 588 (672)
++|++.|+++++++|++......|
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHH
Confidence 999999999999999887544444
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.88 E-value=0.00012 Score=56.74 Aligned_cols=92 Identities=18% Similarity=0.232 Sum_probs=71.4
Q ss_pred HHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcC
Q 005881 519 IASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEAN 596 (672)
Q Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 596 (672)
+..++..+...|++++|.+.+++. ...| +...+..+...+...|+++.|...++++++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666677778888888777653 3344 33566667777788899999999999999998888888889999999999
Q ss_pred ChHHHHHHHHHHhh
Q 005881 597 MWDETAKVRKIMKE 610 (672)
Q Consensus 597 ~~~~a~~~~~~~~~ 610 (672)
++++|.+.++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999998887754
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.83 E-value=0.00026 Score=57.68 Aligned_cols=103 Identities=10% Similarity=0.062 Sum_probs=58.2
Q ss_pred HHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 005881 484 IGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEPN----KVVWRCLLSG 557 (672)
Q Consensus 484 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~ 557 (672)
..+...+...|++++|...|+.+.....-.| ....+..++.++.+.|++++|.+.++.. ...|+ ..++..+...
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344444555555555555555543221111 1234444555556666666666555542 11222 3456666677
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCchHH
Q 005881 558 CKTHKDLVLGRYAAEKILSTDPEDTSAHI 586 (672)
Q Consensus 558 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 586 (672)
+...|+.+.|...++++++..|+++....
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 77888888888888888888887655443
No 158
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.82 E-value=5.7e-05 Score=54.13 Aligned_cols=52 Identities=19% Similarity=0.328 Sum_probs=47.1
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 559 KTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 559 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
...|++++|...++++++.+|+++.++..++.+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999999997765
No 159
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.00073 Score=61.82 Aligned_cols=102 Identities=14% Similarity=0.123 Sum_probs=84.9
Q ss_pred CC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh---cCCHHHHHHHHHHHhcCCCCCCchHH
Q 005881 513 SP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKT---HKDLVLGRYAAEKILSTDPEDTSAHI 586 (672)
Q Consensus 513 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~ 586 (672)
.| |.+.|..|...|.+.|++..|..-|.+. .+.| ++..+..+..++.. ..+..++..+++++++++|.|..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 45 7899999999999999999999988753 3444 55666666666332 34678999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 005881 587 MLSNVYAEANMWDETAKVRKIMKEKSLK 614 (672)
Q Consensus 587 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 614 (672)
.|+..+...|++.+|...|+.|.+....
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999876553
No 160
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.0008 Score=63.63 Aligned_cols=161 Identities=13% Similarity=0.031 Sum_probs=114.9
Q ss_pred hhHHHH-HHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHH---
Q 005881 446 VSWNTM-LVGYAQHGLGREALEIYSMMQENKIKPND-NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIA--- 520 (672)
Q Consensus 446 ~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~--- 520 (672)
.+|..+ ..++...|++++|.+.--..++. .++. .....-..++...++.+.|...|++.+ .+.|+.....
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~ 243 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKL--DATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSAS 243 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhc--ccchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHh
Confidence 445444 34566788888888887777663 2322 222222334456678888998888766 4455432211
Q ss_pred ----------HHHHHhhccCChHHHHHHHHh-CCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCch
Q 005881 521 ----------SVVHLFACRGQTRRAYEFIKS-SPIEP-----NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSA 584 (672)
Q Consensus 521 ----------~l~~~~~~~g~~~~A~~~~~~-~~~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 584 (672)
.=..-..+.|++.+|.+.+.+ +.+.| +...|........+.|+.++|+.-.+.+++++|.-..+
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika 323 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA 323 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence 123345688999999999875 55555 45556666666788999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhC
Q 005881 585 HIMLSNVYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 585 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 611 (672)
+...++++...++|++|.+-+++..+.
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999876543
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.78 E-value=0.0003 Score=69.31 Aligned_cols=103 Identities=14% Similarity=0.132 Sum_probs=82.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhc
Q 005881 451 MLVGYAQHGLGREALEIYSMMQENKIKPN-DNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFAC 528 (672)
Q Consensus 451 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 528 (672)
....+...|++++|++.|+++++. .|+ ...|..+..++...|++++|+..+++++ .+.| +...|..++.+|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al---~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAI---ELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcCCHHHHHHHHHHHHH
Confidence 345667889999999999999985 454 4678888889999999999999999988 4456 56788899999999
Q ss_pred cCChHHHHHHHHh-CCCCCCHHHHHHHHHHH
Q 005881 529 RGQTRRAYEFIKS-SPIEPNKVVWRCLLSGC 558 (672)
Q Consensus 529 ~g~~~~A~~~~~~-~~~~p~~~~~~~l~~~~ 558 (672)
.|++++|...|++ +.+.|+.......+..|
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999986 45667655554444433
No 162
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.77 E-value=3.5e-05 Score=44.92 Aligned_cols=31 Identities=39% Similarity=0.722 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005881 446 VSWNTMLVGYAQHGLGREALEIYSMMQENKI 476 (672)
Q Consensus 446 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 476 (672)
++|++++.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888888764
No 163
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.74 E-value=0.0014 Score=67.54 Aligned_cols=63 Identities=11% Similarity=-0.005 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 005881 548 KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 611 (672)
+..+..+.......|++++|...++++++++| +...|..++.+|...|+.++|.+.+++....
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34444444444455666666666666666666 3556666666666666666666666655443
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.74 E-value=0.00037 Score=60.99 Aligned_cols=81 Identities=11% Similarity=-0.002 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 005881 517 DHIASVVHLFACRGQTRRAYEFIKSS-PIEPN----KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNV 591 (672)
Q Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 591 (672)
..+..++..+...|++++|...+++. ...|+ ...+..+...+...|+++.|...++++++..|++...+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555666666666666666666542 11221 34677777788889999999999999999999888888888999
Q ss_pred HHhcCC
Q 005881 592 YAEANM 597 (672)
Q Consensus 592 ~~~~g~ 597 (672)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 888776
No 165
>PRK15331 chaperone protein SicA; Provisional
Probab=97.73 E-value=0.001 Score=55.35 Aligned_cols=100 Identities=14% Similarity=0.075 Sum_probs=80.6
Q ss_pred CCCCc-hHHHHHHHHHhhccCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHH
Q 005881 511 GISPR-MDHIASVVHLFACRGQTRRAYEFIKSSP-IEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIM 587 (672)
Q Consensus 511 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 587 (672)
|+.++ .+..-....-+-..|++++|..+|.-+. ..| +..-|..|...|...++++.|...|..+..++++||.....
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 44443 2333344555667899999999987642 233 56677888888889999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHhh
Q 005881 588 LSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 588 l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
.+.+|...|+.+.|...|....+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999998765
No 166
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.73 E-value=0.052 Score=52.61 Aligned_cols=189 Identities=12% Similarity=0.087 Sum_probs=113.8
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCch-------hHHHHHHHHH----hcCChHHHHHHHHHHHHCCCCCCHH
Q 005881 415 VIGSALVDMYAKCGRLNDARKVFDHLS--SKNLV-------SWNTMLVGYA----QHGLGREALEIYSMMQENKIKPNDN 481 (672)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~-------~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~ 481 (672)
..+..++....+.++-..|...+.-+. .|+.. +-..+-+..+ ..-+..+-+.+|+...... .|..
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--iDrq 376 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--IDRQ 376 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--ccHH
Confidence 345556666667777777777666554 23222 1111122222 1123344566677766643 3432
Q ss_pred -HHHHHH---HHhhccCc-HHHHHHHHHHhHHhhCCCC-chHHHHHHHH----Hhhc---cCChHH---HHHHHHhCCCC
Q 005881 482 -TFIGVL---SACVHIGL-VEEGWHYFNSMIRDHGISP-RMDHIASVVH----LFAC---RGQTRR---AYEFIKSSPIE 545 (672)
Q Consensus 482 -~~~~ll---~~~~~~g~-~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~----~~~~---~g~~~~---A~~~~~~~~~~ 545 (672)
....|+ .-+.+.|. -++|+++++.+. .+.| |.+.-+.+.. .|.. ...+.+ -..++++.++.
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il---~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLIL---QFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHH---HhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 112222 23455565 788999998776 3455 4433332222 1211 112222 23334566665
Q ss_pred C----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 005881 546 P----NKVVWRCLLSG--CKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMK 609 (672)
Q Consensus 546 p----~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 609 (672)
| +...-+.|.++ ...+|++.++.-...=+.++.| .+.+|..++-++....++++|...+..++
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 5 44455677777 5789999999998888899999 99999999999999999999999999764
No 167
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=4.5e-05 Score=44.44 Aligned_cols=30 Identities=33% Similarity=0.491 Sum_probs=20.6
Q ss_pred chHHHHHHHHHcCCCchhHHHHHHHhHhCC
Q 005881 42 ISWSALISGFSQIGMPEVALNYFRLMVCCV 71 (672)
Q Consensus 42 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 71 (672)
++||.+|++|++.|++++|.++|++|.+.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 356777777777777777777777776655
No 168
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.71 E-value=0.00013 Score=53.17 Aligned_cols=59 Identities=15% Similarity=0.090 Sum_probs=53.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 005881 555 LSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKSL 613 (672)
Q Consensus 555 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 613 (672)
...+.+.++++.|..+++++++++|+++..+..++.+|.+.|++++|.+.++...+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35678899999999999999999999999999999999999999999999999876433
No 169
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.70 E-value=2.9e-05 Score=45.96 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=31.1
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHhcCChHHHHH
Q 005881 571 AEKILSTDPEDTSAHIMLSNVYAEANMWDETAK 603 (672)
Q Consensus 571 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 603 (672)
|+++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 789999999999999999999999999999863
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.70 E-value=0.00039 Score=60.59 Aligned_cols=93 Identities=8% Similarity=-0.132 Sum_probs=71.2
Q ss_pred hHHHHHHHHHhhccCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHH
Q 005881 516 MDHIASVVHLFACRGQTRRAYEFIKSS-PIEPN----KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSN 590 (672)
Q Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 590 (672)
...+..++..+...|++++|...+++. .+.|+ ..+|..+...+...|++++|+..+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 345566666777778888887777653 22222 3477888888999999999999999999999998888888888
Q ss_pred HHH-------hcCChHHHHHHHHHH
Q 005881 591 VYA-------EANMWDETAKVRKIM 608 (672)
Q Consensus 591 ~~~-------~~g~~~~a~~~~~~~ 608 (672)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888776666544
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.65 E-value=0.0016 Score=56.94 Aligned_cols=128 Identities=13% Similarity=0.136 Sum_probs=84.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHH
Q 005881 446 VSWNTMLVGYAQHGLGREALEIYSMMQENKIKPN--DNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASV 522 (672)
Q Consensus 446 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 522 (672)
..+..+...+...|++++|...|++....+..+. ...+..+...+.+.|++++|...+++..+ ..| +...+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l 112 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHHH
Confidence 4567777777888888888888888876433332 24677777778888888888888887763 344 34556666
Q ss_pred HHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCC
Q 005881 523 VHLFACRGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANM 597 (672)
Q Consensus 523 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 597 (672)
+.++...|+...+..-++.. ...++.|.+.++++++++|++ +..++..+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 77777766665554332211 123678889999999999866 5455555554443
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.62 E-value=0.0002 Score=53.87 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=21.2
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHhhccCcHHHHHHHHHH
Q 005881 458 HGLGREALEIYSMMQENKI-KPNDNTFIGVLSACVHIGLVEEGWHYFNS 505 (672)
Q Consensus 458 ~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 505 (672)
.|+++.|+.+++++.+... .|+...+..+..++.+.|++++|..+++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3455555555555554321 01222333344555555555555555544
No 173
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.62 E-value=0.0079 Score=50.51 Aligned_cols=132 Identities=13% Similarity=0.085 Sum_probs=102.2
Q ss_pred CCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCC-CchHHHHHHHHHhhccCChHHHHHHHHhCC-CCC---CHHH
Q 005881 476 IKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGIS-PRMDHIASVVHLFACRGQTRRAYEFIKSSP-IEP---NKVV 550 (672)
Q Consensus 476 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~ 550 (672)
+.|+...-..|..++.+.|+..+|...|++.. . |+- -|....-.+..+....+++.+|...++++. ..| ++..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qal-s-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQAL-S-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-c-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 46666666778888899999999999998875 2 443 477888888888888999999988887642 112 2223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 551 WRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 551 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
...+...+...|...+|+..|+.++.--| ++..-..++..+.++|+.++|..-+..+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 34466778899999999999999999988 677788889999999998888776655543
No 174
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.57 E-value=0.084 Score=50.80 Aligned_cols=108 Identities=14% Similarity=0.126 Sum_probs=76.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcH
Q 005881 417 GSALVDMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLV 496 (672)
Q Consensus 417 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 496 (672)
.+..+.-+...|+...|.++-.+..-|+-.-|...+.+++..++|++-.++... +-.+..|..++.+|.+.|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455566778888888888888778888888888888888888776654321 12336677788888888888
Q ss_pred HHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHh
Q 005881 497 EEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKS 541 (672)
Q Consensus 497 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (672)
.+|..+..++. +..-+..|.++|++.+|.+.--+
T Consensus 254 ~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 254 KEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 88887776532 13456777888888888666443
No 175
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.55 E-value=0.09 Score=50.58 Aligned_cols=106 Identities=16% Similarity=0.125 Sum_probs=73.5
Q ss_pred HHHHHHHHHccCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCch
Q 005881 316 ANTVLDFYSKCELLEESLKTFDEMDEHDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAI 395 (672)
Q Consensus 316 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 395 (672)
.+..+.-+...|+...|.++-.+..-|+...|...+.+++..+++++-.++-.. +-++..|-.++.+|.+.|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344556666778888888888888778888888888888888888876654321 22346677777777777777
Q ss_pred HHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHH
Q 005881 396 EWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVF 437 (672)
Q Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 437 (672)
.+|..+...+ .+..-+.+|.++|++.+|.+.-
T Consensus 254 ~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 254 KEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 7777666551 1245667777777777776553
No 176
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.51 E-value=0.0047 Score=58.67 Aligned_cols=134 Identities=11% Similarity=0.132 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 005881 446 VSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSA-CVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVH 524 (672)
Q Consensus 446 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 524 (672)
.+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 367778888888888899999999988543 2233344433333 333567777999999988654 446778888889
Q ss_pred HhhccCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 005881 525 LFACRGQTRRAYEFIKSS-PIEPN----KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDT 582 (672)
Q Consensus 525 ~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 582 (672)
.+.+.|+.+.|..+|++. ..-|. ...|...+..-.+.|+.+....+.+++.+..|++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999863 32333 34899999999999999999999999999888643
No 177
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.51 E-value=0.00023 Score=50.32 Aligned_cols=61 Identities=16% Similarity=0.175 Sum_probs=44.6
Q ss_pred HHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 005881 522 VVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDT 582 (672)
Q Consensus 522 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 582 (672)
++..+...|++++|.+.|++. ...| +...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 455666777777777777653 3446 455777788888889999999999999999998764
No 178
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.45 E-value=0.0014 Score=50.12 Aligned_cols=79 Identities=11% Similarity=0.038 Sum_probs=67.8
Q ss_pred HHHHHHHHcCCCchhHHHHHHHhHhCCC-CCCcccHHHHHHHHhcCC--------ChhhHHHHHHHHHHhCCCCChhHHH
Q 005881 45 SALISGFSQIGMPEVALNYFRLMVCCVL-EPNYYTYVGAVSACASRG--------DARSGKEIHGRMYRSGLELNSHVSN 115 (672)
Q Consensus 45 ~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~ 115 (672)
...|..+...+++.....+|+.+++.|+ -|+..+|+.++.+.++.. .+...+.++++|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456666777999999999999999999 899999999999987653 3456788999999999999999999
Q ss_pred HHHHHHHh
Q 005881 116 CLINMYGK 123 (672)
Q Consensus 116 ~li~~~~~ 123 (672)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99988765
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.43 E-value=0.0052 Score=63.42 Aligned_cols=143 Identities=10% Similarity=0.009 Sum_probs=103.2
Q ss_pred CCCCchhHHHHHHHHHhc--C---ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcc--------CcHHHHHHHHHHh
Q 005881 441 SSKNLVSWNTMLVGYAQH--G---LGREALEIYSMMQENKIKPNDN-TFIGVLSACVHI--------GLVEEGWHYFNSM 506 (672)
Q Consensus 441 ~~~~~~~~~~li~~~~~~--g---~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~--------g~~~~a~~~~~~~ 506 (672)
...|...|...+.+.... + +...|..+|++.++ ..|+.. .+..+..++... +++..+.+..+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 356778899988875543 2 36799999999999 578874 455554444221 1233444444433
Q ss_pred HHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchH
Q 005881 507 IRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKS-SPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAH 585 (672)
Q Consensus 507 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 585 (672)
........++..+..+.-.....|++++|...+++ +...|+...|..+...+...|+.++|...+++++.++|.++..|
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLY 490 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHH
Confidence 21111233557788887777788999999999986 45778888899999999999999999999999999999877533
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.41 E-value=0.019 Score=54.83 Aligned_cols=95 Identities=13% Similarity=0.138 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHhhccCcHHHHHHHHHHhHHhh-CCCCc--hHH
Q 005881 448 WNTMLVGYAQHGLGREALEIYSMMQENKIKP-----NDN-TFIGVLSACVHIGLVEEGWHYFNSMIRDH-GISPR--MDH 518 (672)
Q Consensus 448 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~p~--~~~ 518 (672)
+..+...+.+.|++++|.++|++....-+.. +.. .|...+-++...|++..|.+.+++..... ++..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 4445566666777777777777665532211 111 22233334555667777777666654221 12112 234
Q ss_pred HHHHHHHhhc--cCChHHHHHHHHhC
Q 005881 519 IASVVHLFAC--RGQTRRAYEFIKSS 542 (672)
Q Consensus 519 ~~~l~~~~~~--~g~~~~A~~~~~~~ 542 (672)
...|+.++-. ...+++|+.-|+.+
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 4445555532 33455555555554
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.34 E-value=0.0091 Score=51.98 Aligned_cols=79 Identities=13% Similarity=0.127 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHH
Q 005881 446 VSWNTMLVGYAQHGLGREALEIYSMMQENKIKPN--DNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASV 522 (672)
Q Consensus 446 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 522 (672)
..|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|+..++.... +.| ....+..+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~l 112 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHHH
Confidence 3566667777778888888888888876422221 23677777778888888888888877663 234 23445555
Q ss_pred HHHhh
Q 005881 523 VHLFA 527 (672)
Q Consensus 523 ~~~~~ 527 (672)
...+.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55554
No 182
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.34 E-value=0.0022 Score=49.36 Aligned_cols=97 Identities=23% Similarity=0.210 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhh
Q 005881 448 WNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFA 527 (672)
Q Consensus 448 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 527 (672)
|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.... ..|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~------------- 65 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALE---LDP------------- 65 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCC-------------
Confidence 3344455555555555555555555531 12223344444444555555555555544431 111
Q ss_pred ccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 005881 528 CRGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDP 579 (672)
Q Consensus 528 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 579 (672)
.+...+..+...+...|+.+.|...++++++..|
T Consensus 66 ------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 66 ------------------DNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred ------------------cchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 1223455555555666666666666666666555
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.34 E-value=0.017 Score=55.11 Aligned_cols=143 Identities=17% Similarity=0.148 Sum_probs=78.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc-CcHHHHHHHHHHhHHhhCCCCc----hHHHHHHHHH
Q 005881 451 MLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHI-GLVEEGWHYFNSMIRDHGISPR----MDHIASVVHL 525 (672)
Q Consensus 451 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~ 525 (672)
.+..|...|++..|-+.+.++ ...|... |++++|++.|+....-+..... ...+..++..
T Consensus 100 A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 445556666666655554443 3345555 6777777777766543322221 2456677788
Q ss_pred hhccCChHHHHHHHHhCC---C-----CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCch-----HHHHHHH
Q 005881 526 FACRGQTRRAYEFIKSSP---I-----EPNKV-VWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSA-----HIMLSNV 591 (672)
Q Consensus 526 ~~~~g~~~~A~~~~~~~~---~-----~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~ 591 (672)
+.+.|++++|.++|++.. . +.+.. .+...+-.+...||...|...+++....+|.-..+ ...|+.+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 888888888888887531 1 11221 12222334566799999999999999998854332 2244444
Q ss_pred HHh--cCChHHHHHHHHHH
Q 005881 592 YAE--ANMWDETAKVRKIM 608 (672)
Q Consensus 592 ~~~--~g~~~~a~~~~~~~ 608 (672)
+.. ...+++|..-|+.+
T Consensus 245 ~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 245 YEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHTT-CCCHHHHCHHHTTS
T ss_pred HHhCCHHHHHHHHHHHccc
Confidence 443 23455555555544
No 184
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.33 E-value=0.0062 Score=50.50 Aligned_cols=95 Identities=12% Similarity=0.049 Sum_probs=64.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCc
Q 005881 419 ALVDMYAKCGRLNDARKVFDHLSS---KNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGL 495 (672)
Q Consensus 419 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 495 (672)
.+...+...|++++|.++|+-+.. .+..-|-.|..++...|++++|+..|.+..... +-|..++-.+..++...|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 344445567888888888877662 344566777777777888888888888877743 2333567777777778888
Q ss_pred HHHHHHHHHHhHHhhCCCC
Q 005881 496 VEEGWHYFNSMIRDHGISP 514 (672)
Q Consensus 496 ~~~a~~~~~~~~~~~~~~p 514 (672)
.+.|.+.|+..+...+-.|
T Consensus 119 ~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 119 VCYAIKALKAVVRICGEVS 137 (157)
T ss_pred HHHHHHHHHHHHHHhccCh
Confidence 8888888877764443333
No 185
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.32 E-value=0.00036 Score=50.08 Aligned_cols=64 Identities=19% Similarity=0.218 Sum_probs=46.3
Q ss_pred hHHHHHHHHHhhccCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHhcCCC
Q 005881 516 MDHIASVVHLFACRGQTRRAYEFIKS-SPIEP-NKVVWRCLLSGCKTHK-DLVLGRYAAEKILSTDP 579 (672)
Q Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 579 (672)
+..|..++..+...|++++|+..|++ +...| +...|..+..++...| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45566666777777777777777754 33445 4557777777788888 68899999999888887
No 186
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.30 E-value=0.0027 Score=60.10 Aligned_cols=128 Identities=10% Similarity=0.038 Sum_probs=89.7
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHh---HHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHh-------CCCC-CCHH
Q 005881 482 TFIGVLSACVHIGLVEEGWHYFNSM---IRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKS-------SPIE-PNKV 549 (672)
Q Consensus 482 ~~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~-p~~~ 549 (672)
.|..|...|.-.|+++.|+...+.= .+.+|-+. ....+..+..++.-.|+++.|.+.++. ++.+ -...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 5666777777788899888776532 23444333 346778888888889999999888874 2322 1344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcC----C--CCCCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 005881 550 VWRCLLSGCKTHKDLVLGRYAAEKILST----D--PEDTSAHIMLSNVYAEANMWDETAKVRKIMK 609 (672)
Q Consensus 550 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 609 (672)
+..+|...|.-..+++.|+.++.+-+.+ + .....++..|+++|...|..++|....++-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5567777777777888888888765432 2 2356778899999999999999888776554
No 187
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.29 E-value=0.056 Score=54.61 Aligned_cols=56 Identities=16% Similarity=0.325 Sum_probs=30.0
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--CCchh-----------HHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005881 419 ALVDMYAKCGRLNDARKVFDHLSS--KNLVS-----------WNTMLVGYAQHGLGREALEIYSMMQEN 474 (672)
Q Consensus 419 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~-----------~~~li~~~~~~g~~~~A~~~~~~m~~~ 474 (672)
+++++....+++++|.++-++.++ +|+.. |.---.+|.+.|+-.+|.++++++...
T Consensus 778 siVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 778 SLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 445555555666666655555543 22210 111123456667777777777776554
No 188
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.28 E-value=0.0038 Score=61.67 Aligned_cols=120 Identities=12% Similarity=0.048 Sum_probs=75.4
Q ss_pred CCCCChhhHHHHHHHhhccCCchhHHHHHHHHHHh--CCCCchHHHHHHHHHHHccCChHHHHHHHhhCCC----CCccc
Q 005881 273 GLMPSEVTFSYVLGAFADVKETIGGRQLHSLIIKM--GFSSFTFVANTVLDFYSKCELLEESLKTFDEMDE----HDVVS 346 (672)
Q Consensus 273 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~ 346 (672)
+.+.+...+..+++.+....+++.+..++...... ....-..+..++|+.|.+.|..+.+..+++.=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44556667777777777777777777766666554 2222233445666777777766666666665443 66666
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCc
Q 005881 347 WNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDI 392 (672)
Q Consensus 347 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 392 (672)
+|.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777766666666666666665555555443
No 189
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.28 E-value=0.0034 Score=48.06 Aligned_cols=80 Identities=11% Similarity=-0.002 Sum_probs=65.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCChhhHHHHHHHHhccC--------ChHHHHHHHHHHHHhcCCCcHHHH
Q 005881 145 WVSLLSSYCQCGEHVHGLKIFLLSRKSGV-AISEFSCASVLGACAVLG--------NLKVGMQIHSLVFKCALEFDKFVA 215 (672)
Q Consensus 145 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 215 (672)
-...|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. .+-....+++.++..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456677777999999999999999999 899999999999987643 234567788899988999988888
Q ss_pred HHHHHHhhc
Q 005881 216 MGLINLYAK 224 (672)
Q Consensus 216 ~~li~~~~~ 224 (672)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888876543
No 190
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.24 E-value=0.0019 Score=63.77 Aligned_cols=94 Identities=14% Similarity=0.028 Sum_probs=43.8
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHhHhC--CCCCCcccHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 005881 44 WSALISGFSQIGMPEVALNYFRLMVCC--VLEPNYYTYVGAVSACASRGDARSGKEIHGRMYRSGLELNSHVSNCLINMY 121 (672)
Q Consensus 44 ~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 121 (672)
...++..+....+.+.+..++.+.+.. ....-..|..++++.|...|..+.+..++..=...|+-||.++++.||+.+
T Consensus 69 ld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~f 148 (429)
T PF10037_consen 69 LDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHF 148 (429)
T ss_pred HHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHH
Confidence 333444444444444444444444332 111122233455555555555555555555555555555555555555555
Q ss_pred HhcCChHHHHHHhhcc
Q 005881 122 GKCGLLSSAQFVFDAS 137 (672)
Q Consensus 122 ~~~g~~~~a~~~~~~~ 137 (672)
.+.|++..|.+++..|
T Consensus 149 l~~~~~~~A~~V~~~~ 164 (429)
T PF10037_consen 149 LKKGNYKSAAKVATEM 164 (429)
T ss_pred hhcccHHHHHHHHHHH
Confidence 5555555555554443
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.24 E-value=0.0092 Score=47.69 Aligned_cols=92 Identities=13% Similarity=0.176 Sum_probs=67.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHh
Q 005881 450 TMLVGYAQHGLGREALEIYSMMQENKIKPND--NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLF 526 (672)
Q Consensus 450 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 526 (672)
.+..++-..|+.++|+.+|++....|+.... ..+..+.+.+...|++++|..+++.....+.-.+ +......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3556777889999999999999998876654 3677788889999999999999998875432111 223333445577
Q ss_pred hccCChHHHHHHHHh
Q 005881 527 ACRGQTRRAYEFIKS 541 (672)
Q Consensus 527 ~~~g~~~~A~~~~~~ 541 (672)
...|+.++|++.+-.
T Consensus 86 ~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 86 YNLGRPKEALEWLLE 100 (120)
T ss_pred HHCCCHHHHHHHHHH
Confidence 788888888877643
No 192
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.23 E-value=0.00049 Score=43.85 Aligned_cols=42 Identities=19% Similarity=0.278 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHH
Q 005881 549 VVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSN 590 (672)
Q Consensus 549 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 590 (672)
.+|..+...+...|++++|++.++++++.+|+|+.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788889999999999999999999999999998888765
No 193
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.22 E-value=0.039 Score=51.02 Aligned_cols=169 Identities=12% Similarity=0.108 Sum_probs=104.3
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC--CCch-h---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhh
Q 005881 420 LVDMYAKCGRLNDARKVFDHLSS--KNLV-S---WNTMLVGYAQHGLGREALEIYSMMQENKIKPND--NTFIGVLSACV 491 (672)
Q Consensus 420 l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~ 491 (672)
....+.+.|++++|.+.|+.+.. |+.. . .-.++.++.+.+++++|...+++..+. .|+. ..+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHh
Confidence 34445567888888888888763 3221 1 233556777888888888888888874 3443 33444444332
Q ss_pred c--c---------------CcH---HHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhCCCCCCHHHH
Q 005881 492 H--I---------------GLV---EEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSSPIEPNKVVW 551 (672)
Q Consensus 492 ~--~---------------g~~---~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 551 (672)
. . .+. .+|...|+.++ .-|-...-..+|...+..+. +...-
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li----------------~~yP~S~ya~~A~~rl~~l~---~~la~ 176 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV----------------RGYPNSQYTTDATKRLVFLK---DRLAK 176 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH----------------HHCcCChhHHHHHHHHHHHH---HHHHH
Confidence 1 1 111 23334444444 33333334455544443321 11111
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---CchHHHHHHHHHhcCChHHHHHHHHHHh
Q 005881 552 --RCLLSGCKTHKDLVLGRYAAEKILSTDPED---TSAHIMLSNVYAEANMWDETAKVRKIMK 609 (672)
Q Consensus 552 --~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 609 (672)
..+...|.+.|++..|..-++.+++.-|+. ..+...++.+|...|..++|.++...+.
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 134455889999999999999999988864 4566788899999999999999887664
No 194
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.19 E-value=0.013 Score=49.30 Aligned_cols=108 Identities=9% Similarity=0.174 Sum_probs=92.6
Q ss_pred hHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhC--C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC--
Q 005881 506 MIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSS--P-IEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPE-- 580 (672)
Q Consensus 506 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-- 580 (672)
..+.....|+...-..|..++.+.|+..||...|++. + +.-|......+..+....++...|...++++.+-+|.
T Consensus 79 a~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r 158 (251)
T COG4700 79 ATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR 158 (251)
T ss_pred HHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC
Confidence 3344466888888889999999999999999999874 2 4458888888999999999999999999999999884
Q ss_pred CCchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 005881 581 DTSAHIMLSNVYAEANMWDETAKVRKIMKEKSL 613 (672)
Q Consensus 581 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 613 (672)
.+.....+++.|...|++.+|...|+....-..
T Consensus 159 ~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp 191 (251)
T COG4700 159 SPDGHLLFARTLAAQGKYADAESAFEVAISYYP 191 (251)
T ss_pred CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC
Confidence 678888999999999999999999998876433
No 195
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.15 E-value=0.00044 Score=49.47 Aligned_cols=57 Identities=14% Similarity=0.251 Sum_probs=30.6
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhCC-CCCCHHHH
Q 005881 492 HIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSSP-IEPNKVVW 551 (672)
Q Consensus 492 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~ 551 (672)
..|++++|++.|+.+... .| +...+..++.+|.+.|++++|.++++++. ..|+...|
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 456666777776666532 33 44555555666666666666666655542 33443333
No 196
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0039 Score=59.43 Aligned_cols=63 Identities=13% Similarity=0.034 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 548 KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
..++..+...+.+.+++..|++..+++++++|+|..+++.-+.+|...|+++.|+..|+++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 345667777888999999999999999999999999999999999999999999999999875
No 197
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.13 E-value=0.092 Score=48.60 Aligned_cols=52 Identities=10% Similarity=-0.034 Sum_probs=32.6
Q ss_pred HHHccCChHHHHHHHhhCCC--CCcc-c---HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005881 322 FYSKCELLEESLKTFDEMDE--HDVV-S---WNALIAGHLASCHYGEAIELLKDMLFE 373 (672)
Q Consensus 322 ~~~~~~~~~~a~~~~~~~~~--~~~~-~---~~~li~~~~~~~~~~~A~~~~~~m~~~ 373 (672)
.+...|++++|...|+.+.. |+.. . .-.+..++.+.+++++|...+++.++.
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34556777777777777654 2221 1 123445667777788888888777765
No 198
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.13 E-value=0.065 Score=54.16 Aligned_cols=264 Identities=13% Similarity=0.075 Sum_probs=137.9
Q ss_pred cchHHHHHHHHHcCCCchhHHHHH---------HHhHhCCCCCCcccHHHHHHHHhcCCChhh--HHHHHHHHHHhCCCC
Q 005881 41 VISWSALISGFSQIGMPEVALNYF---------RLMVCCVLEPNYYTYVGAVSACASRGDARS--GKEIHGRMYRSGLEL 109 (672)
Q Consensus 41 ~~~~~~li~~~~~~g~~~~a~~~~---------~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~--a~~~~~~~~~~g~~~ 109 (672)
.+.+.+-+-.|..+|.+++|..+- +.+... ..+.-.++..=++|.+.++..- ...-++++.+.|-.|
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 344445555666677766664431 111111 1233445566666766665443 333356667777767
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHhhccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 005881 110 NSHVSNCLINMYGKCGLLSSAQFVFDASLERNSISWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCASVLGACAV 189 (672)
Q Consensus 110 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 189 (672)
+... +...++-.|++.+|.++|.+ +|.-.+|+++|..|+-- -..+-+..
T Consensus 634 ~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF----------D~aQE~~~ 682 (1081)
T KOG1538|consen 634 NDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF----------DYAQEFLG 682 (1081)
T ss_pred hHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH----------HHHHHHhh
Confidence 7654 33455667889999888864 66777788887776531 11222333
Q ss_pred cCChHHHHHHHHHHHHh--c-CCCcHHHHHHHHHHhhcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 005881 190 LGNLKVGMQIHSLVFKC--A-LEFDKFVAMGLINLYAKCEKLDLASRVFSNIQLPDLTAWSALIGGYAQLGKACEAIDLF 266 (672)
Q Consensus 190 ~~~~~~a~~~~~~~~~~--~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 266 (672)
.|+.++-+.+.+.-... . -+|. +-..++...|+.++|..+. ..+|-.+-+.++-
T Consensus 683 ~g~~~eKKmL~RKRA~WAr~~kePk-----aAAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~ 739 (1081)
T KOG1538|consen 683 SGDPKEKKMLIRKRADWARNIKEPK-----AAAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIA 739 (1081)
T ss_pred cCChHHHHHHHHHHHHHhhhcCCcH-----HHHHHhhcccchhhhhhhh------------------hcccHHHHHHHHH
Confidence 34444333333222111 1 1121 1223444556666665442 2233333333333
Q ss_pred HHHHHCCCCCChhhHHHHHHHhhccCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCCC--CCc
Q 005881 267 VKMFSSGLMPSEVTFSYVLGAFADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMDE--HDV 344 (672)
Q Consensus 267 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~ 344 (672)
+++-. .+..+...+-.-+-+...+..|.++|..|-+. .+++++....+++++|..+-++.++ +|+
T Consensus 740 rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 740 RKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred hhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccc
Confidence 32211 22233333333444555566666666665433 3677777788888888888888776 333
Q ss_pred cc-----------HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005881 345 VS-----------WNALIAGHLASCHYGEAIELLKDMLFE 373 (672)
Q Consensus 345 ~~-----------~~~li~~~~~~~~~~~A~~~~~~m~~~ 373 (672)
.. |..--.+|.+.|+..+|.++++++...
T Consensus 807 y~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 807 YMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred cchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 21 122224566667777777777766543
No 199
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.12 E-value=0.0023 Score=62.54 Aligned_cols=65 Identities=11% Similarity=-0.116 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCch---HHHHHHHHHhcCChHHHHHHHHHHhhC
Q 005881 547 NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSA---HIMLSNVYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 547 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~ 611 (672)
+...|..+..++...|++++|+..|+++++++|++..+ |.+++.+|...|+.++|.+.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45577777778888888888888888888888877744 788888888888888888888877653
No 200
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.11 E-value=0.0096 Score=47.57 Aligned_cols=85 Identities=11% Similarity=0.023 Sum_probs=48.6
Q ss_pred HHhhccCChHHHHHHHHh---CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC---CCchHHHHHHHHHhc
Q 005881 524 HLFACRGQTRRAYEFIKS---SPIEPN--KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPE---DTSAHIMLSNVYAEA 595 (672)
Q Consensus 524 ~~~~~~g~~~~A~~~~~~---~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~ 595 (672)
.++-..|+.++|+.++++ .+.... ...+-.+.+.++..|++++|..++++.+...|+ +......++.++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344445555555555543 121111 223444555666777777777777777766665 455555666667777
Q ss_pred CChHHHHHHHHHH
Q 005881 596 NMWDETAKVRKIM 608 (672)
Q Consensus 596 g~~~~a~~~~~~~ 608 (672)
|++++|.+.+-..
T Consensus 89 gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 89 GRPKEALEWLLEA 101 (120)
T ss_pred CCHHHHHHHHHHH
Confidence 7777777765443
No 201
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.10 E-value=0.08 Score=51.37 Aligned_cols=160 Identities=15% Similarity=0.105 Sum_probs=96.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC-------CchhHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005881 419 ALVDMYAKCGRLNDARKVFDHLSSK-------NLVSWNTMLVGYAQ---HGLGREALEIYSMMQENKIKPNDNTFIGVLS 488 (672)
Q Consensus 419 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 488 (672)
.++-.|....+++...++++.+... ....-....-++.+ .|+.++|++++..+....-.++..||..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444566677777777777777632 11122234445556 6788888888888665555677777766655
Q ss_pred Hhhc---------cCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCCh-H---HHHHHH---H----hCC-CC--
Q 005881 489 ACVH---------IGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQT-R---RAYEFI---K----SSP-IE-- 545 (672)
Q Consensus 489 ~~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~---~A~~~~---~----~~~-~~-- 545 (672)
.|-. ....++|+..|.+.- .+.|+..+=..++.++...|.. + +..++- . +-+ ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 4421 224677777776443 5566654433344444444432 1 222222 1 111 22
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 005881 546 PNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPED 581 (672)
Q Consensus 546 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 581 (672)
.+.-.+.+++.++.-.||.+.|.+++++++++.|..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 344455788899999999999999999999998744
No 202
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.06 E-value=0.0033 Score=54.70 Aligned_cols=99 Identities=14% Similarity=0.245 Sum_probs=80.0
Q ss_pred HHHHHhccC--CCCCcchHHHHHHHHHcC-----CCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhcCC----------
Q 005881 28 DAQKLFDEM--PERNVISWSALISGFSQI-----GMPEVALNYFRLMVCCVLEPNYYTYVGAVSACASRG---------- 90 (672)
Q Consensus 28 ~a~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---------- 90 (672)
.-...|+.. ..++-.+|..++..|.+. |..+=....+..|.+.|+.-|..+|+.||..+=+..
T Consensus 32 ~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 32 PHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred chHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 345567666 457888999999988765 556667778899999999999999999999875421
Q ss_pred ------ChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 005881 91 ------DARSGKEIHGRMYRSGLELNSHVSNCLINMYGKCGL 126 (672)
Q Consensus 91 ------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 126 (672)
+-+-|.+++++|...|+-||..++..|++.+++.+.
T Consensus 112 F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred hccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 345789999999999999999999999999876543
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.02 E-value=0.0056 Score=57.01 Aligned_cols=58 Identities=9% Similarity=0.006 Sum_probs=31.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCC---CchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 553 CLLSGCKTHKDLVLGRYAAEKILSTDPED---TSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 553 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
-+...+...|+++.|...|+++++..|++ +.++..++.+|...|++++|.++++.+.+
T Consensus 185 ~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 185 WLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555556666666666665555543 33344445555556666666666655543
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.037 Score=49.42 Aligned_cols=135 Identities=11% Similarity=0.034 Sum_probs=74.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhc
Q 005881 449 NTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFAC 528 (672)
Q Consensus 449 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 528 (672)
+.++..+.-.|.+.-.+.++++.++..-+-+......|.+.-.+.|+.+.|..+|+...+..+. .+.
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k-L~~------------ 247 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQK-LDG------------ 247 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh-hhc------------
Confidence 4455555556667777777777777544445556666677777777777777777755432211 111
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 005881 529 RGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIM 608 (672)
Q Consensus 529 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 608 (672)
+.-+..+.......+..++++..|...+.++++.+|.++.+...-+-++.-.|+..+|.+..+.|
T Consensus 248 ---------------~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~ 312 (366)
T KOG2796|consen 248 ---------------LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAM 312 (366)
T ss_pred ---------------cchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 11111122222233444555666666666666666665555555555555556666666666666
Q ss_pred hhC
Q 005881 609 KEK 611 (672)
Q Consensus 609 ~~~ 611 (672)
.++
T Consensus 313 ~~~ 315 (366)
T KOG2796|consen 313 VQQ 315 (366)
T ss_pred hcc
Confidence 543
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.00 E-value=0.016 Score=54.07 Aligned_cols=93 Identities=11% Similarity=0.063 Sum_probs=53.7
Q ss_pred hccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCH
Q 005881 491 VHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS----PIEP-NKVVWRCLLSGCKTHKDL 564 (672)
Q Consensus 491 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~ 564 (672)
.+.|++++|...|+.+.+.+.-.+ ....+..++.+|...|++++|...|+.+ +..| ....+..+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 344555555555555553321111 1234445555566666666666555543 2112 233444455667788999
Q ss_pred HHHHHHHHHHhcCCCCCCc
Q 005881 565 VLGRYAAEKILSTDPEDTS 583 (672)
Q Consensus 565 ~~a~~~~~~~~~~~p~~~~ 583 (672)
+.|...|+++++..|++..
T Consensus 234 ~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHHHHCcCCHH
Confidence 9999999999999886654
No 206
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.99 E-value=0.01 Score=56.38 Aligned_cols=129 Identities=14% Similarity=0.153 Sum_probs=99.0
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHH-hhccCChHHHHHHHHhC-C-CCCCHHHHHHHHHH
Q 005881 481 NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHL-FACRGQTRRAYEFIKSS-P-IEPNKVVWRCLLSG 557 (672)
Q Consensus 481 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~ 557 (672)
..|..++..+.+.+..+.|..+|.+..+. ...+.++|...+.+ +...++.+.|.++|+.. . +..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888999999999999999998732 22355677777777 34467777799999863 1 33477789999999
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCC---chHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 005881 558 CKTHKDLVLGRYAAEKILSTDPEDT---SAHIMLSNVYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 558 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 611 (672)
+...|+.+.|..+|++++..-|.+. ..|...++.=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998876544 57888888899999999999999888754
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.92 E-value=0.003 Score=45.86 Aligned_cols=64 Identities=14% Similarity=0.241 Sum_probs=47.4
Q ss_pred HHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHH
Q 005881 524 HLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIM 587 (672)
Q Consensus 524 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 587 (672)
..|.+.+++++|.+.++.+ ...| ++..|......+...|++++|...++++++..|+++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 4567777788887777653 3455 45566677777888899999999999999999977655443
No 208
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.86 E-value=0.27 Score=46.84 Aligned_cols=150 Identities=15% Similarity=0.163 Sum_probs=82.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCch-HHHHHHHHHhhccCChH
Q 005881 457 QHGLGREALEIYSMMQENKIKPND--NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRM-DHIASVVHLFACRGQTR 533 (672)
Q Consensus 457 ~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~ 533 (672)
-.|+++.|.+-|+-|.. .|.. .-...|.-...+.|+.+.|.++-+... +..|.. -.+...+...+..|+++
T Consensus 132 ~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa---~~Ap~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 132 LEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAA---EKAPQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred hcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHH---hhccCCchHHHHHHHHHHhcCChH
Confidence 34666666666666655 2222 123334444455566666666655443 334432 34555566666666666
Q ss_pred HHHHHHHhC----CCCCCHHH--HHHHHHH---HHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHH
Q 005881 534 RAYEFIKSS----PIEPNKVV--WRCLLSG---CKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKV 604 (672)
Q Consensus 534 ~A~~~~~~~----~~~p~~~~--~~~l~~~---~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 604 (672)
.|+++++.. .+.++..- --.|+.+ ..-..|...|.....++.++.|+-...-..-+..|.+.|+..++.++
T Consensus 206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhH
Confidence 666666532 13333221 1122222 22234566666667777777776666666667777777777777777
Q ss_pred HHHHhhCC
Q 005881 605 RKIMKEKS 612 (672)
Q Consensus 605 ~~~~~~~~ 612 (672)
++.+-+..
T Consensus 286 lE~aWK~e 293 (531)
T COG3898 286 LETAWKAE 293 (531)
T ss_pred HHHHHhcC
Confidence 77665443
No 209
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.79 E-value=0.81 Score=47.18 Aligned_cols=174 Identities=10% Similarity=0.065 Sum_probs=79.9
Q ss_pred CCCcccHHHHHHHHhcCCChhhHHHHHHHHHHh-CCC--------CChhHHHHHHHHHHhcCChHHHHHHhhccCCCCcc
Q 005881 73 EPNYYTYVGAVSACASRGDARSGKEIHGRMYRS-GLE--------LNSHVSNCLINMYGKCGLLSSAQFVFDASLERNSI 143 (672)
Q Consensus 73 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 143 (672)
.|.+..|..+.......-.++.|+..|-+.... |++ .+.....+=|.+| .|++++|++++-.+..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 466666766665555555555555544333221 111 1111112222322 3778888888777666652
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 005881 144 SWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAIS----EFSCASVLGACAVLGNLKVGMQIHSLVFKCALEFDKFVAMGLI 219 (672)
Q Consensus 144 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 219 (672)
.|..+.+.|++-...++++. -|-..| ...++.+-..++....|+.|.+.+..--. ...++
T Consensus 766 ----Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ 829 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQI 829 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHH
Confidence 34555566666655555432 111111 12344444444555555555555443211 11233
Q ss_pred HHhhcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 005881 220 NLYAKCEKLDLASRVFSNIQLPDLTAWSALIGGYAQLGKACEAIDLF 266 (672)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 266 (672)
.++.+..++++-+.+-..+++ +....-.+.+.+...|.-++|.+.+
T Consensus 830 ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHH
Confidence 344444444444444444432 2223344445555555555555444
No 210
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.77 E-value=0.61 Score=45.59 Aligned_cols=353 Identities=14% Similarity=0.078 Sum_probs=170.2
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhcC----CCcHHHHHHHHHHhhcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 005881 182 SVLGACAVLGNLKVGMQIHSLVFKCAL----EFDKFVAMGLINLYAKCEKLDLASRVFSNIQLPDLTAWSALIGGYAQLG 257 (672)
Q Consensus 182 ~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 257 (672)
..+.++...|.+.+++.+++.+...-+ ..+..+|+.++-++.+.=-++ +-+.+...=...|--|+-.|.+.=
T Consensus 133 i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLE----l~e~~s~dl~pdyYemilfY~kki 208 (549)
T PF07079_consen 133 IEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLE----LKESMSSDLYPDYYEMILFYLKKI 208 (549)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHH----HHHhcccccChHHHHHHHHHHHHH
Confidence 344555667777777776666655433 356666776665554431111 111111111122444444443321
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcc--CCchhHHHHHHHHHHhCCCCchH-HHHHHHHHHHccCChHHHHH
Q 005881 258 KACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADV--KETIGGRQLHSLIIKMGFSSFTF-VANTVLDFYSKCELLEESLK 334 (672)
Q Consensus 258 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~ 334 (672)
.. ++.-.-..+.|-...+..++....-. ....--.+++......-+.|+-. +...|+.-+.+ +.+++..
T Consensus 209 ~~------~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~ 280 (549)
T PF07079_consen 209 HA------FDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGH 280 (549)
T ss_pred HH------HhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHH
Confidence 11 11100011233333344443332211 12222233333333344444432 22334444433 3333333
Q ss_pred HHhhCC--------CCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHH-------HHHHHHc-CcCchHHH
Q 005881 335 TFDEMD--------EHDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYS-------NILNISS-DIPAIEWG 398 (672)
Q Consensus 335 ~~~~~~--------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~-------~ll~~~~-~~~~~~~a 398 (672)
+-+.+. +.=+.++..++....+.++..+|-+.+.-+... .|+...-. .+.+..+ .......-
T Consensus 281 ~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tkl 358 (549)
T PF07079_consen 281 FCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKL 358 (549)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHH
Confidence 333322 133456778888888888888888877766543 34332111 1111111 22222222
Q ss_pred ---HHHHHHHHhcCCCCcccHHHHHH---HHHHhcCC-HHHHHHHHhhCC---CCCchhHHHHH----HHHHhc---CCh
Q 005881 399 ---KQTHCCIVKPGFDSNVVIGSALV---DMYAKCGR-LNDARKVFDHLS---SKNLVSWNTML----VGYAQH---GLG 461 (672)
Q Consensus 399 ---~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~li----~~~~~~---g~~ 461 (672)
..+|..+....+..- ....-|+ .-+-+.|. -++|.++++.+. .-|..+-|.+. ..|.+. ...
T Consensus 359 r~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~ 437 (549)
T PF07079_consen 359 RDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAI 437 (549)
T ss_pred HHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 223333333322211 1111122 12333444 778888887776 33444333322 222221 223
Q ss_pred HHHHHHHHHHHHCCCCCCHHH----HHHHHHH--hhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHH
Q 005881 462 REALEIYSMMQENKIKPNDNT----FIGVLSA--CVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRA 535 (672)
Q Consensus 462 ~~A~~~~~~m~~~g~~p~~~~----~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 535 (672)
..-+++-+-..+.|++|-.+. -+.|..| +...|++.++.-+-..+. .+.|++.+|..++-++....++++|
T Consensus 438 ~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA 514 (549)
T PF07079_consen 438 PRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEA 514 (549)
T ss_pred HHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHH
Confidence 333444444456677775432 3333333 456788888877765555 6789999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHH
Q 005881 536 YEFIKSSPIEPNKVVWRCL 554 (672)
Q Consensus 536 ~~~~~~~~~~p~~~~~~~l 554 (672)
.+++..+| |+...|++-
T Consensus 515 ~~~l~~LP--~n~~~~dsk 531 (549)
T PF07079_consen 515 WEYLQKLP--PNERMRDSK 531 (549)
T ss_pred HHHHHhCC--CchhhHHHH
Confidence 99999986 577766653
No 211
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.9 Score=47.41 Aligned_cols=117 Identities=10% Similarity=0.012 Sum_probs=91.2
Q ss_pred CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHH
Q 005881 475 KIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSSPIEPNKVVWRCL 554 (672)
Q Consensus 475 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 554 (672)
|......+.+--+.-+...|+..+|.++-.... -||...|..-+.+++..+++++-+++-++.. .+.-|.-.
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PF 750 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPF 750 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhH
Confidence 334445566666777888899999998876554 6889999999999999999999888887653 35667778
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHH
Q 005881 555 LSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKI 607 (672)
Q Consensus 555 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 607 (672)
..+|.+.|+.++|.+++-+.-.+ .-.+.+|.+.|++.+|.+.--+
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHH
Confidence 89999999999999987654222 2678899999999999887544
No 212
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.058 Score=48.22 Aligned_cols=137 Identities=15% Similarity=0.093 Sum_probs=98.8
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHH----
Q 005881 346 SWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALV---- 421 (672)
Q Consensus 346 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---- 421 (672)
..+.++..+.-.|.+.-.+..+++.++...+.++...+.+.+.-.+.|+.+.|...++...+..-..+....+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3455666777778888888889998887656677778888888889999999999999887654444444444333
Q ss_pred -HHHHhcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 005881 422 -DMYAKCGRLNDARKVFDHLSS---KNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFI 484 (672)
Q Consensus 422 -~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 484 (672)
..|.-+.++..|.+.|.++.. .|++.-|.-.-+....|+..+|++..+.|.+. .|...+-.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 345556788888888888774 44555666666666778899999999999884 56555443
No 213
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.67 E-value=0.98 Score=46.62 Aligned_cols=264 Identities=13% Similarity=0.139 Sum_probs=116.3
Q ss_pred HHhhcCCChhHHHHHHhcCCCC-----CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCc
Q 005881 220 NLYAKCEKLDLASRVFSNIQLP-----DLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVKET 294 (672)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 294 (672)
.++.+.|++-...++++.-... -...|+.+...+.....|++|.+.|..-... ...+.++.+..++
T Consensus 768 elr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le~f 838 (1189)
T KOG2041|consen 768 ELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLELF 838 (1189)
T ss_pred HHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHHhh
Confidence 3344444544444444432211 1234566666666666666666655442211 1123333333333
Q ss_pred hhHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005881 295 IGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMDEHDVVSWNALIAGHLASCHYGEAIELLKDMLFEG 374 (672)
Q Consensus 295 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 374 (672)
++-+.+-. .++.+....-.+.+++.+.|.-++|...|-+...|- +-+..|...+++.+|.++-++..
T Consensus 839 ~~LE~la~-----~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~--- 905 (1189)
T KOG2041|consen 839 GELEVLAR-----TLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQ--- 905 (1189)
T ss_pred hhHHHHHH-----hcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhcc---
Confidence 33222221 223344444555666666666666666655544332 23445566666666666655443
Q ss_pred CCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCCCc---hhHHHH
Q 005881 375 HCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSKNL---VSWNTM 451 (672)
Q Consensus 375 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l 451 (672)
-|...|+.+- .+-+++. +.+ + ---|..+.+.|+.-+|.+++.+|.+... ..|..+
T Consensus 906 -l~qv~tliak-----------~aaqll~---~~~------~-~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~ 963 (1189)
T KOG2041|consen 906 -LPQVQTLIAK-----------QAAQLLA---DAN------H-MEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRL 963 (1189)
T ss_pred -chhHHHHHHH-----------HHHHHHh---hcc------h-HHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHH
Confidence 2222222110 0111111 100 0 1134556677777777777766652111 111111
Q ss_pred ----HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhh
Q 005881 452 ----LVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFA 527 (672)
Q Consensus 452 ----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 527 (672)
+-+-.-..+..++++-.++...+|...|... +...|-..++-++.+...+ -....++..|..--.
T Consensus 964 KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr----gAEAyHFmilAQrql 1032 (1189)
T KOG2041|consen 964 KKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR----GAEAYHFMILAQRQL 1032 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh----hHHHHHHHHHHHHHH
Confidence 1111112234445555555555554333221 2223333444444433321 113345555566666
Q ss_pred ccCChHHHHHH
Q 005881 528 CRGQTRRAYEF 538 (672)
Q Consensus 528 ~~g~~~~A~~~ 538 (672)
..|....|++-
T Consensus 1033 ~eg~v~~Al~T 1043 (1189)
T KOG2041|consen 1033 FEGRVKDALQT 1043 (1189)
T ss_pred HhchHHHHHHH
Confidence 77888888765
No 214
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.1 Score=48.18 Aligned_cols=104 Identities=12% Similarity=0.161 Sum_probs=76.8
Q ss_pred CCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccC---ChHHHHHHHHh-CCCCCCH-HH
Q 005881 477 KPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRG---QTRRAYEFIKS-SPIEPNK-VV 550 (672)
Q Consensus 477 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~-~~~~p~~-~~ 550 (672)
+-|...|..|...|...|+.+.|...|.+..+ +.| +++.+..+..++..+. ...++.++|++ +..+|+. .+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r---L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR---LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 44556888888889999999999888887763 344 5667777777665432 45677888876 3556744 45
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 005881 551 WRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTS 583 (672)
Q Consensus 551 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 583 (672)
..-|...+...|++.+|...++.++++.|.+..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 555666689999999999999999998886644
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.61 E-value=0.0032 Score=46.46 Aligned_cols=61 Identities=11% Similarity=0.048 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcC----CCC---CCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 550 VWRCLLSGCKTHKDLVLGRYAAEKILST----DPE---DTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 550 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
+++.+...+...|++++|+..+++++++ .++ -..++..++.+|...|++++|.+.+++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5666667777778888888888777643 222 245677888899999999999998887643
No 216
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.59 E-value=0.024 Score=49.46 Aligned_cols=96 Identities=15% Similarity=0.147 Sum_probs=67.2
Q ss_pred HHHHhcC--CCCCcchHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccC------------
Q 005881 232 SRVFSNI--QLPDLTAWSALIGGYAQL-----GKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVK------------ 292 (672)
Q Consensus 232 ~~~~~~~--~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~------------ 292 (672)
...|+.. ...+-.+|..+++.|.+. |..+=....+..|.+-|+.-|..+|+.||..+-+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444444 345666777777776643 556666677788888888888888888888776532
Q ss_pred ----CchhHHHHHHHHHHhCCCCchHHHHHHHHHHHccC
Q 005881 293 ----ETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCE 327 (672)
Q Consensus 293 ----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 327 (672)
+-+-+.+++++|...|+-||..++..|++.+.+.+
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 34556778888888888888888888887775544
No 217
>PRK11906 transcriptional regulator; Provisional
Probab=96.49 E-value=0.049 Score=53.63 Aligned_cols=143 Identities=10% Similarity=0.116 Sum_probs=71.5
Q ss_pred ChHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHhhcc---------CcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhh
Q 005881 460 LGREALEIYSMMQE-NKIKPNDN-TFIGVLSACVHI---------GLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFA 527 (672)
Q Consensus 460 ~~~~A~~~~~~m~~-~g~~p~~~-~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 527 (672)
..+.|+.+|.+... +.+.|+.. .|..+..++... ....+|.++-++.+ .+.| |+.....++.++.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHH
Confidence 34567778888772 22566653 455444433211 12233444444433 3334 4455555555555
Q ss_pred ccCChHHHHHHHHh-CCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHH--HHHHHHHhcCChHHHHH
Q 005881 528 CRGQTRRAYEFIKS-SPIEPNKV-VWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHI--MLSNVYAEANMWDETAK 603 (672)
Q Consensus 528 ~~g~~~~A~~~~~~-~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~a~~ 603 (672)
-.|+++.|...|++ ..+.||.. .|......+.-.|+.++|.+..+++++++|....+-. ..+++|+..+ .++|.+
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~ 428 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIK 428 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHH
Confidence 55666666666654 23445432 4444444455566666666666666666664333222 3333444433 444555
Q ss_pred HHH
Q 005881 604 VRK 606 (672)
Q Consensus 604 ~~~ 606 (672)
++-
T Consensus 429 ~~~ 431 (458)
T PRK11906 429 LYY 431 (458)
T ss_pred HHh
Confidence 443
No 218
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.47 E-value=0.027 Score=53.62 Aligned_cols=152 Identities=13% Similarity=0.073 Sum_probs=87.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHH----HHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHH---hhC-CCCchH
Q 005881 447 SWNTMLVGYAQHGLGREALEIYSMM----QENKIKPN-DNTFIGVLSACVHIGLVEEGWHYFNSMIR---DHG-ISPRMD 517 (672)
Q Consensus 447 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~-~~p~~~ 517 (672)
.|..|...|.-.|+++.|+..-+.= ++-|-+.. ...+..+..++.-.|+++.|.+.|+.... ..| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555555566667777776654332 22221211 23566777777777888888777765431 111 122334
Q ss_pred HHHHHHHHhhccCChHHHHHHHHh-------CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC--CCC----Cc
Q 005881 518 HIASVVHLFACRGQTRRAYEFIKS-------SP-IEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTD--PED----TS 583 (672)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~-------~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~----~~ 583 (672)
..-+|...|.-...++.|++++.+ +. .--...++.+|..++...|..++|....++.+++. -++ ..
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelT 356 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELT 356 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhh
Confidence 555677777777778888777653 11 11244556677888888888888888777765422 122 22
Q ss_pred hHHHHHHHHHhcCCh
Q 005881 584 AHIMLSNVYAEANMW 598 (672)
Q Consensus 584 ~~~~l~~~~~~~g~~ 598 (672)
+...+.+.-...|..
T Consensus 357 ar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 357 ARDNLSDLILELGQE 371 (639)
T ss_pred hhhhhHHHHHHhCCC
Confidence 344555555555543
No 219
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=96.41 E-value=0.0028 Score=50.34 Aligned_cols=42 Identities=36% Similarity=0.615 Sum_probs=35.5
Q ss_pred ceeEEEeCCEEEEEEeccccCCChHHHHHHHHHHHHHHHhCCccCCCCCCCCCC
Q 005881 618 GCSWTELQNKMHYFSTSRFAQFQGIDLHEVMNQLSVHLFDGGYVPDPIYSSHFE 671 (672)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~ 671 (672)
|+||++. +.|++|+..||+. .+..++...||.|++..++|++
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~ 43 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDV 43 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCc
Confidence 6899755 9999999999988 4556788899999999998865
No 220
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=1.7 Score=45.46 Aligned_cols=335 Identities=13% Similarity=0.067 Sum_probs=172.8
Q ss_pred CCCCChhhHH-----HHHHHHhccCChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCC---ChhHHHHHHhcCCC--C
Q 005881 172 GVAISEFSCA-----SVLGACAVLGNLKVGMQIHSLVFKCALEFDKFVAMGLINLYAKCE---KLDLASRVFSNIQL--P 241 (672)
Q Consensus 172 g~~p~~~t~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~--~ 241 (672)
|+..+..-|. .+|.-+...+.+..|.++-..+--.-..- ..++.....-+.+.. +.+.+..+-+++.. .
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~ 505 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT 505 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC
Confidence 5555544443 45666666777777777766653221111 456666666665553 23334444444444 4
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCC----CCChhhHHHHHHHhhccCCchhHHHHHHHHHHhCCCCchHHHH
Q 005881 242 DLTAWSALIGGYAQLGKACEAIDLFVKMFSSGL----MPSEVTFSYVLGAFADVKETIGGRQLHSLIIKMGFSSFTFVAN 317 (672)
Q Consensus 242 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 317 (672)
...+|..+.....+.|+.+-|..+++.=...+- -.+..-+...+.-+...|+.+....++-.+...-.
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~-------- 577 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLN-------- 577 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHH--------
Confidence 556788888777888998888887764322221 11223345556666667777766666555443210
Q ss_pred HHHHHHHccCChHHHHHHHhhCCC-CCcccHHHHHHHHHhcCChhHHHHHHH--HH----HhCCCCCChHHHHHHHHHHc
Q 005881 318 TVLDFYSKCELLEESLKTFDEMDE-HDVVSWNALIAGHLASCHYGEAIELLK--DM----LFEGHCPNLYTYSNILNISS 390 (672)
Q Consensus 318 ~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~--~m----~~~g~~p~~~t~~~ll~~~~ 390 (672)
.-+.+....+...|..++....+ .|..+ + ..+.+.++-.+++..|. .. ...|..|+.. ..-++|+
T Consensus 578 -~s~l~~~l~~~p~a~~lY~~~~r~~~~~~---l-~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk---~~a~~~a 649 (829)
T KOG2280|consen 578 -RSSLFMTLRNQPLALSLYRQFMRHQDRAT---L-YDFYNQDDNHQALASFHLQASYAAETIEGRIPALK---TAANAFA 649 (829)
T ss_pred -HHHHHHHHHhchhhhHHHHHHHHhhchhh---h-hhhhhcccchhhhhhhhhhhhhhhhhhcccchhHH---HHHHHHh
Confidence 00011111222233333333221 11100 1 11111222222222111 10 0113333332 2333444
Q ss_pred CcCchHHHHH----------HHHHHH-hcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcC
Q 005881 391 DIPAIEWGKQ----------THCCIV-KPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHG 459 (672)
Q Consensus 391 ~~~~~~~a~~----------~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 459 (672)
+.....-..+ +.+.+. +.|..-..-+.+--+.-+...|+-.+|.++-.+..-||-..|-.-+.+++..+
T Consensus 650 ~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~ 729 (829)
T KOG2280|consen 650 KSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIK 729 (829)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhh
Confidence 4333211111 111111 11222222333444555667788888888888888888888877888888888
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHH
Q 005881 460 LGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFI 539 (672)
Q Consensus 460 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (672)
++++-.++-+.+. .+.-|.-...+|.+.|+.++|..++-+.. +.. -.+.+|.+.|++.+|.+.-
T Consensus 730 kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 730 KWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHHHH
Confidence 8877665544432 14456667888888888888888876443 211 4567788888888877663
No 221
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.32 E-value=0.31 Score=43.83 Aligned_cols=160 Identities=13% Similarity=0.125 Sum_probs=91.4
Q ss_pred HHHhcCCHHHHHHHHhhCCC--CCc----hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhc--
Q 005881 423 MYAKCGRLNDARKVFDHLSS--KNL----VSWNTMLVGYAQHGLGREALEIYSMMQENKIKPND--NTFIGVLSACVH-- 492 (672)
Q Consensus 423 ~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~-- 492 (672)
.+...|++++|.+.|+.+.. |+. ...-.++.++.+.|+++.|...++++++. -|+. ..+...+.+.+.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHHH
Confidence 34566778888888777762 221 24455677777888888888888887774 3443 222222222211
Q ss_pred -----------cCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhCCCCCCHHHH--HHHHHHHH
Q 005881 493 -----------IGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSSPIEPNKVVW--RCLLSGCK 559 (672)
Q Consensus 493 -----------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~--~~l~~~~~ 559 (672)
.+...+|...|+.++ .-|-......+|...+..+. +...- ..+...|.
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~~~~li----------------~~yP~S~y~~~A~~~l~~l~---~~la~~e~~ia~~Y~ 152 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEEFEELI----------------KRYPNSEYAEEAKKRLAELR---NRLAEHELYIARFYY 152 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHHHHHHH----------------HH-TTSTTHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred hCccchhcccChHHHHHHHHHHHHHH----------------HHCcCchHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 112233444444443 33444445555555444331 11111 12455688
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCC---chHHHHHHHHHhcCChHHHHH
Q 005881 560 THKDLVLGRYAAEKILSTDPEDT---SAHIMLSNVYAEANMWDETAK 603 (672)
Q Consensus 560 ~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~ 603 (672)
+.|.+..|..-++.+++.-|+.+ .+...++..|.+.|..+.|..
T Consensus 153 ~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp CTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 99999999999999999999754 446688888999999885443
No 222
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.27 E-value=0.43 Score=42.93 Aligned_cols=140 Identities=12% Similarity=0.120 Sum_probs=78.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCch-HHHHHH
Q 005881 448 WNTMLVGYAQHGLGREALEIYSMMQENKIKPND----NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRM-DHIASV 522 (672)
Q Consensus 448 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l 522 (672)
+-.....+...|++.+|.+.|+++...- |+. .....++.++.+.|++++|...++..++.+.-.|.. ..+-.+
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~--P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRY--PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 3344556677788888888888887742 221 245566777788888888888888877665444432 121111
Q ss_pred HHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc-----------------hH
Q 005881 523 VHLFACRGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTS-----------------AH 585 (672)
Q Consensus 523 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----------------~~ 585 (672)
+.++... .... + ......+....|...++.+++.-|+++. .-
T Consensus 86 g~~~~~~--~~~~---~----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e 144 (203)
T PF13525_consen 86 GLSYYKQ--IPGI---L----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHE 144 (203)
T ss_dssp HHHHHHH--HHHH---H-----------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh--Cccc---h----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHH
Confidence 1111110 0000 0 0112233445666677777777776542 23
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 586 IMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 586 ~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
..++..|.+.|.+..|..-++.+.+
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3678889999999999999998875
No 223
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.24 E-value=0.019 Score=48.58 Aligned_cols=61 Identities=18% Similarity=0.128 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 550 VWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 550 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
+...++..+...|+++.|...+++++..+|-+...|..++.+|...|+..+|.+.++.+..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556677788999999999999999999999999999999999999999999999998753
No 224
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.15 E-value=0.048 Score=42.97 Aligned_cols=89 Identities=13% Similarity=0.041 Sum_probs=61.1
Q ss_pred HHhhccCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC----chHHHHHHHHHhcCC
Q 005881 524 HLFACRGQTRRAYEFIKS-SPIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDT----SAHIMLSNVYAEANM 597 (672)
Q Consensus 524 ~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 597 (672)
-++...|+++.|++.|.+ +.+-| +...|+.-..+++-+|+.++|+.-+++++++.-+.. .+|+..+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 345667777777777754 33344 566777777778888888888888888877653222 346677777888888
Q ss_pred hHHHHHHHHHHhhCC
Q 005881 598 WDETAKVRKIMKEKS 612 (672)
Q Consensus 598 ~~~a~~~~~~~~~~~ 612 (672)
-+.|..-|+...+-|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888887766543
No 225
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.13 E-value=0.28 Score=46.25 Aligned_cols=121 Identities=12% Similarity=0.110 Sum_probs=55.2
Q ss_pred HHHHhhccCcHHHHHHHHHHhHHhhCCCC----chHHHHHHHHHhhccCChHHHHHHHH-------hCCCCCCHHHH---
Q 005881 486 VLSACVHIGLVEEGWHYFNSMIRDHGISP----RMDHIASVVHLFACRGQTRRAYEFIK-------SSPIEPNKVVW--- 551 (672)
Q Consensus 486 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~-------~~~~~p~~~~~--- 551 (672)
+..++...+.++++++.|+...+-..-.. ...++..|...|.+..++++|.-+.. ..+++.=...|
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 34444444555555555555442111111 12455556666666666555544332 22222111111
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHhcC--CCCC----CchHHHHHHHHHhcCChHHHHHHHH
Q 005881 552 --RCLLSGCKTHKDLVLGRYAAEKILST--DPED----TSAHIMLSNVYAEANMWDETAKVRK 606 (672)
Q Consensus 552 --~~l~~~~~~~g~~~~a~~~~~~~~~~--~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~ 606 (672)
..+.-+++..|.+..|.+..+++.++ ...| +.....++++|...|+.|.|..-++
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 22233455566666666665555332 2222 2233356666666666665555444
No 226
>PRK11906 transcriptional regulator; Provisional
Probab=96.06 E-value=0.27 Score=48.65 Aligned_cols=65 Identities=6% Similarity=-0.144 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 005881 547 NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 547 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 611 (672)
|+.+...+..+....++.+.|...+++++.++|+.+.++...+.+..-.|+.++|.+.+++..+.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 44444444444455555666666666666666666666666666666666666666666654433
No 227
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.067 Score=51.35 Aligned_cols=95 Identities=16% Similarity=0.117 Sum_probs=74.6
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHh
Q 005881 517 DHIASVVHLFACRGQTRRAYEFIKS-SPIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAE 594 (672)
Q Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 594 (672)
..+..+.-++.+.+++.+|++.-.+ +..+| |.-..---..+|...|+++.|+..|+++++++|+|-.+...|..+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3466677888888888888887654 33344 555666667789999999999999999999999999998899888877
Q ss_pred cCChHHH-HHHHHHHhhC
Q 005881 595 ANMWDET-AKVRKIMKEK 611 (672)
Q Consensus 595 ~g~~~~a-~~~~~~~~~~ 611 (672)
..++.+. .++|..|-..
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 7766655 7788888643
No 228
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.06 E-value=0.0089 Score=44.01 Aligned_cols=29 Identities=14% Similarity=-0.149 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 005881 549 VVWRCLLSGCKTHKDLVLGRYAAEKILST 577 (672)
Q Consensus 549 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 577 (672)
.++..+...+...|++++|++.+++++++
T Consensus 47 ~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 47 NTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34566666677777777777777777653
No 229
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.04 E-value=0.19 Score=41.12 Aligned_cols=86 Identities=12% Similarity=0.052 Sum_probs=52.2
Q ss_pred HhhccCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCch---HHHHHHHHHhcC
Q 005881 525 LFACRGQTRRAYEFIKSS----PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSA---HIMLSNVYAEAN 596 (672)
Q Consensus 525 ~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g 596 (672)
...+.|++++|.+.|+.+ |..| ...+-..++.++.+.++++.|...+++.++++|.++.+ +...+-++....
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD 98 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence 344556666666665543 2222 33445557777888888888888888888888877643 334444444443
Q ss_pred C---------------hHHHHHHHHHHhh
Q 005881 597 M---------------WDETAKVRKIMKE 610 (672)
Q Consensus 597 ~---------------~~~a~~~~~~~~~ 610 (672)
. ..+|...|+.+.+
T Consensus 99 ~~~~~~~~~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 99 EGSLQSFFRSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred hhHHhhhcccccCcHHHHHHHHHHHHHHH
Confidence 3 5566666666554
No 230
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.03 E-value=0.59 Score=37.25 Aligned_cols=140 Identities=13% Similarity=0.042 Sum_probs=78.8
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHH
Q 005881 456 AQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRA 535 (672)
Q Consensus 456 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 535 (672)
.-.|..++..++..+.... .+..-++.++--...+-+=+-..+.++.+-+-+ | ...+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiF----D----------is~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIF----D----------ISKCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS---------------GGG-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhc----C----------chhhcchHHH
Confidence 3456667777777766652 222333333332222223333344444332211 1 1235555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 005881 536 YEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKSLK 614 (672)
Q Consensus 536 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 614 (672)
...+-.++ .+.......+.....+|+-++-..++..+.+.+..+|+....++.+|.+.|+..++.+++++.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 55554443 233344556777889999999999999988665558899999999999999999999999999888874
No 231
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=1.6 Score=42.24 Aligned_cols=159 Identities=12% Similarity=0.021 Sum_probs=100.1
Q ss_pred CChHHHHHHHH-HHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHH--HHhcCCHHHHHHHHhhCCCCCchh------
Q 005881 377 PNLYTYSNILN-ISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDM--YAKCGRLNDARKVFDHLSSKNLVS------ 447 (672)
Q Consensus 377 p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~------ 447 (672)
|...++..+-. ++...++.++|.++--.+.+.... ..+..+++. +--.++.+.|...|++....|+..
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~---n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT---NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA 242 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc---hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH
Confidence 33444444432 445677888887776666654321 122222322 223577888888888877544322
Q ss_pred ---------HHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCc
Q 005881 448 ---------WNTMLVGYAQHGLGREALEIYSMMQEN---KIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPR 515 (672)
Q Consensus 448 ---------~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 515 (672)
|..-..-..+.|++.+|.+.|.+.+.. ++.|+...|.....+..+.|+..+|+.-.+... .+.|.
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~s 319 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSS 319 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHH
Confidence 222233356788999999999988873 234445567777888889999999998887665 44443
Q ss_pred -hHHHHHHHHHhhccCChHHHHHHHHh
Q 005881 516 -MDHIASVVHLFACRGQTRRAYEFIKS 541 (672)
Q Consensus 516 -~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (672)
...|..-..++.-.+++++|.+-+++
T Consensus 320 yikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 320 YIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24444455666677888888888865
No 232
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.27 Score=45.34 Aligned_cols=119 Identities=9% Similarity=0.101 Sum_probs=81.8
Q ss_pred HhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCH
Q 005881 489 ACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSSPIEPNKVVWRC---LLSGCKTHKDL 564 (672)
Q Consensus 489 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~ 564 (672)
.....|+..+|...|+..... .| +.+....|+.+|...|+.++|..++..++.+-....|.. -+....+..+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 455678888888888877632 33 456677788888888888888888888875554444444 12223333333
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 005881 565 VLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 565 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 611 (672)
.+... +++-+..+|+|...-..++..|...|+.++|.+.+-.+..+
T Consensus 220 ~~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 220 PEIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CCHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 32222 34455678999999999999999999999999877666543
No 233
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.89 E-value=0.11 Score=42.01 Aligned_cols=49 Identities=10% Similarity=0.125 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 005881 476 IKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVH 524 (672)
Q Consensus 476 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 524 (672)
+.|+..+..+++.+|+..|++..|.++.+...+.++++.+...|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3455555555555555555555555555555555554444445444443
No 234
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=3.2 Score=44.16 Aligned_cols=82 Identities=16% Similarity=0.105 Sum_probs=51.6
Q ss_pred HHHcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 005881 50 GFSQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSACASRGDARSGKEIHGRMYRSGLELNSHVSNCLINMYGKCGLLSS 129 (672)
Q Consensus 50 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 129 (672)
.+-+.|++++|...|-+-+.. +.| ..+++-+.....+..-...++.+.+.|+. +...-+.|+..|.+.++.+.
T Consensus 377 ~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 377 YLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHH
Confidence 445567777777777665432 222 23455555555666666677777777754 44555677777888777777
Q ss_pred HHHHhhccC
Q 005881 130 AQFVFDASL 138 (672)
Q Consensus 130 a~~~~~~~~ 138 (672)
-.++.+...
T Consensus 450 L~efI~~~~ 458 (933)
T KOG2114|consen 450 LTEFISKCD 458 (933)
T ss_pred HHHHHhcCC
Confidence 777666554
No 235
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.80 E-value=0.092 Score=44.39 Aligned_cols=70 Identities=14% Similarity=0.180 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhH----HhhCCCCchHH
Q 005881 448 WNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMI----RDHGISPRMDH 518 (672)
Q Consensus 448 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~p~~~~ 518 (672)
...++..+...|++++|.++++++.... +-|...+..++.++...|+..+|.+.|+.+. +..|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445666677788888888888777742 3445677778888888888888887777654 24566666544
No 236
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.60 E-value=0.074 Score=52.39 Aligned_cols=62 Identities=8% Similarity=0.059 Sum_probs=37.0
Q ss_pred hHHHHHHHHHhhccCChHHHHHHHHh-CCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 005881 516 MDHIASVVHLFACRGQTRRAYEFIKS-SPIEPNKV----VWRCLLSGCKTHKDLVLGRYAAEKILST 577 (672)
Q Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 577 (672)
...+..+..+|...|++++|+..|++ +.+.|+.. +|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35555556666666666666666654 44455432 3666666666666666666666666665
No 237
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.55 E-value=0.022 Score=33.68 Aligned_cols=32 Identities=16% Similarity=0.061 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 005881 549 VVWRCLLSGCKTHKDLVLGRYAAEKILSTDPE 580 (672)
Q Consensus 549 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 580 (672)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45677777788888888888888888888885
No 238
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=1.1 Score=41.58 Aligned_cols=175 Identities=11% Similarity=0.039 Sum_probs=111.4
Q ss_pred HHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhC
Q 005881 432 DARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHG 511 (672)
Q Consensus 432 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 511 (672)
...+++++...+....--.-.......|++.+|..+|+...+.. +-+...-..+..++...|+++.|..++..+-.+.
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~- 198 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA- 198 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-
Confidence 44455555544322222223345667889999999999888852 3334566678888899999999999987654211
Q ss_pred CCCchHHHHHHHHHhhccCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC--CCCchHHHH
Q 005881 512 ISPRMDHIASVVHLFACRGQTRRAYEFIKSSPIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDP--EDTSAHIML 588 (672)
Q Consensus 512 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p--~~~~~~~~l 588 (672)
-.........-+..+.+.....+..++-.+....| |...-..+...+...|+.+.|...+-.+++.+. ++...-..+
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 01111122334566666666666666666655567 555666777778889999999888777776543 466777788
Q ss_pred HHHHHhcCChHH-HHHHHHHH
Q 005881 589 SNVYAEANMWDE-TAKVRKIM 608 (672)
Q Consensus 589 ~~~~~~~g~~~~-a~~~~~~~ 608 (672)
..++...|.-+. +.+.++++
T Consensus 279 le~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 279 LELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred HHHHHhcCCCCHHHHHHHHHH
Confidence 888888774443 33444444
No 239
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.50 E-value=0.32 Score=48.30 Aligned_cols=193 Identities=11% Similarity=0.046 Sum_probs=108.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHH
Q 005881 457 QHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAY 536 (672)
Q Consensus 457 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 536 (672)
+..+++.-+++-++.++ +.||..+-..++ +--.+....++.+++++..+.... .+..- ......| ...
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~-----~lg~s-~~~~~~g---~~~ 247 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA-----SLGKS-QFLQHHG---HFW 247 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH-----hhchh-hhhhccc---chh
Confidence 33455666666666666 567765433333 233345578888888877632110 00000 0000111 111
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC--CCchHHHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 005881 537 EFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPE--DTSAHIMLSNVYAEANMWDETAKVRKIMKEKSLK 614 (672)
Q Consensus 537 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 614 (672)
+.+.+...+|-...-..+...+++.|+.++|.+.++.+++..|. +...+..|+.++...+.+.++..++.+-.+-...
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 22222222333333455666778889999999999999987774 5567889999999999999999999887554444
Q ss_pred cCCceeEEEeCCEEEEEEeccccCCC-------hHHHHHHHHHHHHHHHhCCccCC
Q 005881 615 KDTGCSWTELQNKMHYFSTSRFAQFQ-------GIDLHEVMNQLSVHLFDGGYVPD 663 (672)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~g~~~~ 663 (672)
+....+|.. .-+..-..+|...|+ .......++.+.+.+....++|+
T Consensus 328 kSAti~YTa--ALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 328 KSATICYTA--ALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred chHHHHHHH--HHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 444344420 000111122222221 12233456677788888888885
No 240
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.46 E-value=0.034 Score=32.77 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 005881 550 VWRCLLSGCKTHKDLVLGRYAAEKILSTDPED 581 (672)
Q Consensus 550 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 581 (672)
.|..+...+...|++++|+..++++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45566677777888888888888888887754
No 241
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.44 E-value=2.9 Score=41.03 Aligned_cols=92 Identities=15% Similarity=0.174 Sum_probs=68.6
Q ss_pred HHHHhccCCC-C-CcchHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhcCCChhhHHHHHHHHHHhC
Q 005881 29 AQKLFDEMPE-R-NVISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSACASRGDARSGKEIHGRMYRSG 106 (672)
Q Consensus 29 a~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 106 (672)
-+++=+++++ | |+.+|-.||..+-.+|..++..+++++|..- .+--+.+|..-+.+-....++...+.+|.+.++..
T Consensus 28 ~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 28 ELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 3356666665 3 6778999999999999999999999998642 33445677777777777789999999999988875
Q ss_pred CCCChhHHHHHHHHHHh
Q 005881 107 LELNSHVSNCLINMYGK 123 (672)
Q Consensus 107 ~~~~~~~~~~li~~~~~ 123 (672)
+ +...|...++.--+
T Consensus 107 l--~ldLW~lYl~YIRr 121 (660)
T COG5107 107 L--NLDLWMLYLEYIRR 121 (660)
T ss_pred c--cHhHHHHHHHHHHh
Confidence 4 45566666664443
No 242
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.43 E-value=2 Score=39.07 Aligned_cols=166 Identities=17% Similarity=0.156 Sum_probs=95.3
Q ss_pred HhcCCHHHHHHHHhhCCCCCc------hhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhc-----
Q 005881 425 AKCGRLNDARKVFDHLSSKNL------VSWNTMLVGYAQHGLGREALEIYSMMQENK-IKPNDNTFIGVLSACVH----- 492 (672)
Q Consensus 425 ~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~----- 492 (672)
.+.|++++|.+.|+.+.+..+ .+--.++-++.+.++++.|+...++....- -.|| .-|...|.+++.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQID 123 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccCC
Confidence 355788888888877763221 133334556667788888888888877642 1222 233333333332
Q ss_pred --cCcHHHHH---HHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHH
Q 005881 493 --IGLVEEGW---HYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSSPIEPNKVVW--RCLLSGCKTHKDLV 565 (672)
Q Consensus 493 --~g~~~~a~---~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~ 565 (672)
..+...+. .-|+.++.++ |+ +.-..+|...+.... |.... ..+..-|.+.|.+.
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ry---Pn-------------S~Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRY---PN-------------SRYAPDAKARIVKLN---DALAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHC---CC-------------CcchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcChH
Confidence 12222233 3333333221 22 222222222222110 11111 23455688999999
Q ss_pred HHHHHHHHHhcCCCCCCc---hHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 566 LGRYAAEKILSTDPEDTS---AHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 566 ~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
.|..-++.+++--|+.+. ++..+..+|...|..++|.+.-+-+..
T Consensus 185 AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 185 AAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 999999999998776554 455677779999999999999887764
No 243
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.39 E-value=0.18 Score=40.78 Aligned_cols=52 Identities=25% Similarity=0.389 Sum_probs=38.4
Q ss_pred hhCCCCchHHHHHHHHHhhccCChHHHHHHHHh----CCCCCCHHHHHHHHHHHHh
Q 005881 509 DHGISPRMDHIASVVHLFACRGQTRRAYEFIKS----SPIEPNKVVWRCLLSGCKT 560 (672)
Q Consensus 509 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~----~~~~p~~~~~~~l~~~~~~ 560 (672)
...+.|+..+..+++.+|+..|++..|+++++. -+++-+...|..|+.-+..
T Consensus 45 ~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 45 SSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 345678888888888888888888888888764 2444467788888765443
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.35 E-value=0.11 Score=47.40 Aligned_cols=66 Identities=17% Similarity=0.223 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---CchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 005881 545 EPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPED---TSAHIMLSNVYAEANMWDETAKVRKIMKEKS 612 (672)
Q Consensus 545 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 612 (672)
.||..-| |...+...|++++|...|..+.+-.|++ |+++.-|+.+..+.|+.++|..+++++.++-
T Consensus 177 ~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 177 TPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred cchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 3444444 5566666777777777777776655543 4556677777777777777777777766543
No 245
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.32 E-value=2.3 Score=39.08 Aligned_cols=192 Identities=17% Similarity=0.144 Sum_probs=116.4
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 005881 415 VIGSALVDMYAKCGRLNDARKVFDHLS-----SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLS- 488 (672)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~- 488 (672)
.........+...+.+..+...+.... ......+......+...+++..+.+.+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 344455555666666666666665543 22333455555666666667777777777766432221 12222222
Q ss_pred HhhccCcHHHHHHHHHHhHHhhCCCC----chHHHHHHHHHhhccCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhc
Q 005881 489 ACVHIGLVEEGWHYFNSMIRDHGISP----RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEPN--KVVWRCLLSGCKTH 561 (672)
Q Consensus 489 ~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~ 561 (672)
.+...|+++.|...+..... ..| ....+......+...++.++|...+.+. ...|+ ...+..+...+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 56677777777777776642 222 2233444444466677777777777653 23333 45566666677777
Q ss_pred CCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 562 KDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 562 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
++.+.+...+..+++..|.....+..++..+...|.++++...+.+...
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7888888888888888876555666666666666678888877776654
No 246
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.11 E-value=0.062 Score=42.35 Aligned_cols=55 Identities=16% Similarity=-0.069 Sum_probs=51.2
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 005881 557 GCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 557 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 611 (672)
+....|+++.|++.|.+++.+-|.++++|.+.+..|.-+|+.++|.+-+++..+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999999999999999999999987763
No 247
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.08 E-value=1.6 Score=36.48 Aligned_cols=41 Identities=7% Similarity=0.041 Sum_probs=18.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 005881 451 MLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVH 492 (672)
Q Consensus 451 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 492 (672)
++..+...+.+.....+++.+...+ ..+...++.++..+++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 4444444444555555555544443 2333344444444443
No 248
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.01 E-value=1.3 Score=44.26 Aligned_cols=102 Identities=8% Similarity=0.104 Sum_probs=71.5
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhCCC--CCC--HHHHHHHHHH
Q 005881 482 TFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSSPI--EPN--KVVWRCLLSG 557 (672)
Q Consensus 482 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~--~~~~~~l~~~ 557 (672)
+-..+..++.+.|+.++|++.|++|.+.........+...|+.+|...+.+.++..++.+-.. -|. ..+|+..+-.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 334566777889999999999999986543222446777899999999999999999887541 233 3356665544
Q ss_pred HHhcCC---------------HHHHHHHHHHHhcCCCCCCc
Q 005881 558 CKTHKD---------------LVLGRYAAEKILSTDPEDTS 583 (672)
Q Consensus 558 ~~~~g~---------------~~~a~~~~~~~~~~~p~~~~ 583 (672)
.+..+| -..|.++..++.+.+|.-+.
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 544444 13456788899999986553
No 249
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.97 E-value=0.14 Score=46.35 Aligned_cols=99 Identities=16% Similarity=0.279 Sum_probs=77.4
Q ss_pred HHHHHhccCC--CCCcchHHHHHHHHHcC-----CCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhcCC----------
Q 005881 28 DAQKLFDEMP--ERNVISWSALISGFSQI-----GMPEVALNYFRLMVCCVLEPNYYTYVGAVSACASRG---------- 90 (672)
Q Consensus 28 ~a~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---------- 90 (672)
..+..|..++ ++|-.+|-..+..+... +.++=....++.|++.|+.-|..+|+.||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3445566665 47778888888777553 556667778899999999999999999998875432
Q ss_pred ------ChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 005881 91 ------DARSGKEIHGRMYRSGLELNSHVSNCLINMYGKCGL 126 (672)
Q Consensus 91 ------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 126 (672)
.-.-+..++++|...|+-||..+-..|++++.+.+-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 234578899999999999999999999999987764
No 250
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.93 E-value=0.46 Score=43.44 Aligned_cols=85 Identities=19% Similarity=0.207 Sum_probs=50.3
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHhhcc
Q 005881 455 YAQHGLGREALEIYSMMQENKIKPND----NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPR-MDHIASVVHLFACR 529 (672)
Q Consensus 455 ~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 529 (672)
+.+.|++..|...|...++.. |+. ..+-.|..++...|++++|..+|..+.+.++-.|. ++.+--|+....+.
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l 228 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL 228 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh
Confidence 445566777777777777652 322 23555677777777777777777777665544443 25555555555555
Q ss_pred CChHHHHHHHHh
Q 005881 530 GQTRRAYEFIKS 541 (672)
Q Consensus 530 g~~~~A~~~~~~ 541 (672)
|+.++|...+++
T Consensus 229 ~~~d~A~atl~q 240 (262)
T COG1729 229 GNTDEACATLQQ 240 (262)
T ss_pred cCHHHHHHHHHH
Confidence 555555555443
No 251
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.89 E-value=2.8 Score=41.68 Aligned_cols=151 Identities=9% Similarity=-0.074 Sum_probs=82.5
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhhccCcHHHHHHHHHHhHHh-hCCCCchHH
Q 005881 443 KNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKP---NDNTFIGVLSACVHIGLVEEGWHYFNSMIRD-HGISPRMDH 518 (672)
Q Consensus 443 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~ 518 (672)
....+|..++..+.+.|+++.|...+.++...+..+ +......-...+...|+..+|...++..... .....+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 344578888888999999999999998888754222 2233334455566678888998888877641 111101111
Q ss_pred HHHHHHHhhccCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHh------cCCHHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 005881 519 IASVVHLFACRGQTRRAYEF-IKSSPIEPNKVVWRCLLSGCKT------HKDLVLGRYAAEKILSTDPEDTSAHIMLSNV 591 (672)
Q Consensus 519 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 591 (672)
...+...+.. ..+..... ........-..++..+..-+.. .++.+.+...|+++.++.|+....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 0000000001122222233333 3889999999999999999888888887777
Q ss_pred HHhc
Q 005881 592 YAEA 595 (672)
Q Consensus 592 ~~~~ 595 (672)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6543
No 252
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.83 E-value=0.86 Score=42.67 Aligned_cols=151 Identities=9% Similarity=0.061 Sum_probs=86.5
Q ss_pred cCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH----HHHHhhccCcHHHH
Q 005881 427 CGRLNDARKVFDHLS---SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIG----VLSACVHIGLVEEG 499 (672)
Q Consensus 427 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~----ll~~~~~~g~~~~a 499 (672)
.|+..+|...++++. ..|..+++-.-.+|...|+.+.-...+++.... ..||...|.. +.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 466666666666665 346667777777777777777777777777654 3455533322 22234566777777
Q ss_pred HHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHH
Q 005881 500 WHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSSPIEPN-------KVVWRCLLSGCKTHKDLVLGRYAA 571 (672)
Q Consensus 500 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~a~~~~ 571 (672)
.+.-++.. .+.| |.-...++...+.-.|+..++.+++.+-.-.-+ ..-|.. .-.+...+.++.|+.+|
T Consensus 195 Ek~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~-Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 195 EKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT-ALFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH-HHhhhcccchhHHHHHH
Confidence 77666554 3333 334444566667777788888877765421111 111111 11233446777777777
Q ss_pred HHHh--cCCCCCC
Q 005881 572 EKIL--STDPEDT 582 (672)
Q Consensus 572 ~~~~--~~~p~~~ 582 (672)
++-+ +++.+|.
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 6544 3444444
No 253
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.76 E-value=0.11 Score=44.45 Aligned_cols=88 Identities=11% Similarity=0.084 Sum_probs=63.7
Q ss_pred hhccCChHHHHHHHHh-CCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCCh
Q 005881 526 FACRGQTRRAYEFIKS-SPIEP------NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMW 598 (672)
Q Consensus 526 ~~~~g~~~~A~~~~~~-~~~~p------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 598 (672)
+...|++++|..-+.. +.+-| ..+.|..-..+..+.+..+.|+....++++++|....+....+.+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 4455566666555432 11111 2334445556677888999999999999999998888888889999999999
Q ss_pred HHHHHHHHHHhhCCC
Q 005881 599 DETAKVRKIMKEKSL 613 (672)
Q Consensus 599 ~~a~~~~~~~~~~~~ 613 (672)
++|.+-++++.+..+
T Consensus 185 eealeDyKki~E~dP 199 (271)
T KOG4234|consen 185 EEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHhCc
Confidence 999999998887544
No 254
>PRK15331 chaperone protein SicA; Provisional
Probab=94.74 E-value=0.55 Score=39.50 Aligned_cols=11 Identities=27% Similarity=0.265 Sum_probs=4.1
Q ss_pred CChHHHHHHHH
Q 005881 459 GLGREALEIYS 469 (672)
Q Consensus 459 g~~~~A~~~~~ 469 (672)
|++++|..+|.
T Consensus 51 Gk~~eA~~~F~ 61 (165)
T PRK15331 51 GRLDEAETFFR 61 (165)
T ss_pred CCHHHHHHHHH
Confidence 33333333333
No 255
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.69 E-value=0.31 Score=49.39 Aligned_cols=54 Identities=13% Similarity=-0.057 Sum_probs=24.6
Q ss_pred chHHHHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005881 515 RMDHIASVVHLFACRGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKI 574 (672)
Q Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 574 (672)
+...|..|.+...++|+++-|.+.+++.+ -|..|+-.|...|+.+.-.++.+.+
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHH
Confidence 34455555555555555555555555443 1333344444445544444444443
No 256
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.58 E-value=2.1 Score=35.70 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=14.5
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005881 530 GQTRRAYEFIKSSPIEPNKVVWRCLLSGCK 559 (672)
Q Consensus 530 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 559 (672)
++.+.|.+++++.. ++..|..++..+.
T Consensus 110 ~d~~~a~~~~~~~~---~~~lw~~~~~~~l 136 (140)
T smart00299 110 GNYEKAIEYFVKQN---NPELWAEVLKALL 136 (140)
T ss_pred cCHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 55566666665532 4445655555543
No 257
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.49 E-value=3.5 Score=37.06 Aligned_cols=89 Identities=11% Similarity=0.032 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhc----CCCCCCch
Q 005881 517 DHIASVVHLFACRGQTRRAYEFIKSSP-------IEPNK-VVWRCLLSGCKTHKDLVLGRYAAEKILS----TDPEDTSA 584 (672)
Q Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~ 584 (672)
+.+..+...|.+..++++|-..|.+-+ .-|+. ..+-+.+-.+....|+..|+..++..-. ..|++..+
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~ 230 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRS 230 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHH
Confidence 345555667777778877766654421 11222 1233344445566788888888887544 34556666
Q ss_pred HHHHHHHHHhcCChHHHHHHHH
Q 005881 585 HIMLSNVYAEANMWDETAKVRK 606 (672)
Q Consensus 585 ~~~l~~~~~~~g~~~~a~~~~~ 606 (672)
...|...| ..|+.+++.++..
T Consensus 231 lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 231 LENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHh-ccCCHHHHHHHHc
Confidence 77777666 4578888777664
No 258
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.44 E-value=1.1 Score=36.89 Aligned_cols=115 Identities=14% Similarity=0.096 Sum_probs=58.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhc
Q 005881 452 LVGYAQHGLGREALEIYSMMQENKIKPND---NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFAC 528 (672)
Q Consensus 452 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 528 (672)
.....+.|++++|.+.|+.+... .+... ..-..++.++.+.|++++|...+++.++.+.-.|++ .|.....+++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHH
Confidence 34445566677777777666654 22222 244556666667777777777766666443333332 22222222222
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 005881 529 RGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTS 583 (672)
Q Consensus 529 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 583 (672)
-...+..+.-+- + .=+..+....|...|+++++.-|++.-
T Consensus 95 ~~~~~~~~~~~~--~-------------~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 95 YEQDEGSLQSFF--R-------------SDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHhhhHHhhhc--c-------------cccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 111111111110 1 111123356788888899999997643
No 259
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.35 E-value=2.7 Score=36.93 Aligned_cols=176 Identities=15% Similarity=0.093 Sum_probs=96.6
Q ss_pred CCHHHHHHHHhhCC--CCC-chhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCcHHHHHHHH
Q 005881 428 GRLNDARKVFDHLS--SKN-LVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPND-NTFIGVLSACVHIGLVEEGWHYF 503 (672)
Q Consensus 428 g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~ 503 (672)
|-.+-|+-=|.... .|+ +..||-+.--+...|+++.|.+.|+...+. .|.. .++..-.-++.-.|++.-|.+-|
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHH
Confidence 33444444444333 333 346777777778888888888888888773 4432 33333333455668888887766
Q ss_pred HHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC--
Q 005881 504 NSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPED-- 581 (672)
Q Consensus 504 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-- 581 (672)
...-+...-.|-...|--+ -.+.-++.+|..-+.+.-..-|..-|...+-.+.- |++. .+.+++++.+...++
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl---~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~ 231 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYL---NEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTS 231 (297)
T ss_pred HHHHhcCCCChHHHHHHHH---HHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHH
Confidence 5443222222212222222 22344666666555432223455556554444321 1111 122333333332222
Q ss_pred -----CchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 582 -----TSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 582 -----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
+++|..|+..|...|+.++|..+|+....
T Consensus 232 ~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 232 LAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 46788999999999999999999997654
No 260
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.28 E-value=4.2 Score=37.11 Aligned_cols=140 Identities=11% Similarity=0.134 Sum_probs=81.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHH
Q 005881 447 SWNTMLVGYAQHGLGREALEIYSMMQENKIKPN---DNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVV 523 (672)
Q Consensus 447 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 523 (672)
.|-.-+..-.+.|++++|.+.|+.+..+. +-+ ..+...++.++.+.+++++|+..+++..+.++-.|+.+ |...+
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Yl 113 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYL 113 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHH
Confidence 34444455566777888888887777542 222 23555666677777778888777777776666566543 22222
Q ss_pred HHhhccCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-----------------chH
Q 005881 524 HLFACRGQTRRAYEFIKSSP-IEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDT-----------------SAH 585 (672)
Q Consensus 524 ~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-----------------~~~ 585 (672)
.++. .|...+ ..-|. .-...|...++..+..-|+.. ..-
T Consensus 114 kgLs----------~~~~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E 170 (254)
T COG4105 114 KGLS----------YFFQIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE 170 (254)
T ss_pred HHHH----------HhccCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 2222 111111 00011 112344445555555566432 223
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhC
Q 005881 586 IMLSNVYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 586 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 611 (672)
..+++.|.+.|.|..|..-++.|.+.
T Consensus 171 m~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 171 MAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 47788899999999999999999874
No 261
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.28 E-value=2.7 Score=43.45 Aligned_cols=87 Identities=17% Similarity=0.118 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC-CCch---------hHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHHHH
Q 005881 418 SALVDMYAKCGRLNDARKVFDHLSS-KNLV---------SWNTMLVGYAQH----GLGREALEIYSMMQENKIKPNDNTF 483 (672)
Q Consensus 418 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~---------~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~~~ 483 (672)
..++...+-.|+-+.+.+.+....+ .++. .|..++..++.. .+.+.|.++++.+.+. -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 4455555566666666666665442 2221 233333333322 2445555555555553 4444433
Q ss_pred HHH-HHHhhccCcHHHHHHHHHHh
Q 005881 484 IGV-LSACVHIGLVEEGWHYFNSM 506 (672)
Q Consensus 484 ~~l-l~~~~~~g~~~~a~~~~~~~ 506 (672)
... .+.+...|++++|++.|+..
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a 293 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERA 293 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHh
Confidence 222 22334445555555555543
No 262
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.20 E-value=4.4 Score=37.11 Aligned_cols=194 Identities=14% Similarity=0.144 Sum_probs=124.1
Q ss_pred HHHHHHHHcCcCchHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCc-hhHHHHHH-HHH
Q 005881 382 YSNILNISSDIPAIEWGKQTHCCIVKP-GFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSS--KNL-VSWNTMLV-GYA 456 (672)
Q Consensus 382 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~~~ 456 (672)
+......+...+....+...+...... ........+......+...+....+.+.+..... ++. ........ .+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY 141 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 333333444444444444444443332 1222333444555556666667777777776653 222 22333333 688
Q ss_pred hcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCc--hHHHHHHHHHhhccC
Q 005881 457 QHGLGREALEIYSMMQENKIKP----NDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPR--MDHIASVVHLFACRG 530 (672)
Q Consensus 457 ~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g 530 (672)
..|+++.|...+.+... ..| ....+......+...++.+.+...+..... ..++ ...+..+...+...+
T Consensus 142 ~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 142 ELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK---LNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh---hCcccchHHHHHhhHHHHHcc
Confidence 88999999999999865 344 223444445556778899999999988773 3333 677888888899999
Q ss_pred ChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 005881 531 QTRRAYEFIKSS-PIEPN-KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPE 580 (672)
Q Consensus 531 ~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 580 (672)
.+++|...+... ...|+ ...+..+...+...+..+.+...+++.++..|.
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999888753 34454 445555555555778899999999999999986
No 263
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.09 E-value=3.7 Score=40.26 Aligned_cols=71 Identities=15% Similarity=0.116 Sum_probs=41.2
Q ss_pred HHHHHHHccCChHHHHHHHhhCCCC---Ccc----cHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCChHHHHHHHH
Q 005881 318 TVLDFYSKCELLEESLKTFDEMDEH---DVV----SWNALIAGHLA---SCHYGEAIELLKDMLFEGHCPNLYTYSNILN 387 (672)
Q Consensus 318 ~li~~~~~~~~~~~a~~~~~~~~~~---~~~----~~~~li~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 387 (672)
.++-.|-...+++...++.+.+... +.. .-....-++.+ .|+.++|++++..+......+++.||..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444566666777777777776652 111 11122334455 6778888888887665555666666655544
Q ss_pred H
Q 005881 388 I 388 (672)
Q Consensus 388 ~ 388 (672)
.
T Consensus 226 I 226 (374)
T PF13281_consen 226 I 226 (374)
T ss_pred H
Confidence 3
No 264
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.07 E-value=8.2 Score=39.72 Aligned_cols=181 Identities=12% Similarity=0.007 Sum_probs=115.1
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005881 413 NVVIGSALVDMYAKCGRLNDARKVFDHLSSK---NLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSA 489 (672)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 489 (672)
...+|...+..-.+.|+.+.+.-.|++..-| -...|--.+.-....|+.+-|..++.+..+--++-.+.+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4455666666677778888888888777633 2234544444444558888888777766654333222322222222
Q ss_pred hhccCcHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHhhccCChHHHH---HHHHhC-CCCCCHHHHHHH----HHH-HH
Q 005881 490 CVHIGLVEEGWHYFNSMIRDHGISPR-MDHIASVVHLFACRGQTRRAY---EFIKSS-PIEPNKVVWRCL----LSG-CK 559 (672)
Q Consensus 490 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l----~~~-~~ 559 (672)
+-..|+.+.|..+++.+.++. |+ ...-..-+....+.|..+.+. +++... +.+-+......+ ... +.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 445689999999999887543 54 344444566677888888887 555432 212222222221 222 44
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcC
Q 005881 560 THKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEAN 596 (672)
Q Consensus 560 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 596 (672)
..++.+.|..++.++.+..|++...|..+.+.....+
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 5689999999999999999999999999988876655
No 265
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.04 E-value=10 Score=40.84 Aligned_cols=74 Identities=12% Similarity=0.077 Sum_probs=40.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHc
Q 005881 315 VANTVLDFYSKCELLEESLKTFDEMDEHDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISS 390 (672)
Q Consensus 315 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 390 (672)
.-...+..+.+.+++.....++.. ...+...-.....+....|+.++|....+.+-..|.. .+.....++..+.
T Consensus 101 Lr~~~l~~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~ 174 (644)
T PRK11619 101 LQSRFVNELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQ 174 (644)
T ss_pred HHHHHHHHHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHH
Confidence 334445555666777766663322 2234444455666777778777777666666554422 2333444444444
No 266
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.88 E-value=1.9 Score=36.22 Aligned_cols=95 Identities=18% Similarity=0.191 Sum_probs=59.2
Q ss_pred HHHhhccCcHHHHHHHHHHhHHhhCCCCch-HHHHHHHHHhhccCChHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCH
Q 005881 487 LSACVHIGLVEEGWHYFNSMIRDHGISPRM-DHIASVVHLFACRGQTRRAYEFIKSSPI-EPNKVVWRCLLSGCKTHKDL 564 (672)
Q Consensus 487 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~ 564 (672)
+..-...++.+++..++..+. -+.|.. +.-..-+..+.+.|++.+|..+|+++.- .|....-..|+..|.....-
T Consensus 17 ~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 334456678888888887776 456643 3333445566778888888888887642 34444556677777766554
Q ss_pred HHHHHHHHHHhcCCCCCCchH
Q 005881 565 VLGRYAAEKILSTDPEDTSAH 585 (672)
Q Consensus 565 ~~a~~~~~~~~~~~p~~~~~~ 585 (672)
..=....+++++..+ ++.+.
T Consensus 94 ~~Wr~~A~evle~~~-d~~a~ 113 (160)
T PF09613_consen 94 PSWRRYADEVLESGA-DPDAR 113 (160)
T ss_pred hHHHHHHHHHHhcCC-ChHHH
Confidence 555555666666666 43433
No 267
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.87 E-value=0.11 Score=48.25 Aligned_cols=110 Identities=12% Similarity=0.112 Sum_probs=73.7
Q ss_pred HHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcC
Q 005881 486 VLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKS-SPIEP-NKVVWRCLLSGCKTHK 562 (672)
Q Consensus 486 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g 562 (672)
-.+-|.++|.+++|+..|...+ .+.| ++..+..-..+|.+..++..|..--.. +.+.. -...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 4567889999999999998766 5566 777788888889888888777554332 21111 1224444445555678
Q ss_pred CHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHH
Q 005881 563 DLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETA 602 (672)
Q Consensus 563 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 602 (672)
+..+|.+-++.+++++|++... -..|.......|+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~EL----kK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIEL----KKSLARINSLRERK 215 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHH----HHHHHHhcchHhhh
Confidence 8999999999999999975443 33344444444443
No 268
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.66 E-value=0.14 Score=30.61 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=21.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHh
Q 005881 584 AHIMLSNVYAEANMWDETAKVRKIMK 609 (672)
Q Consensus 584 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 609 (672)
++..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999999999999998854
No 269
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.48 E-value=2 Score=43.71 Aligned_cols=132 Identities=15% Similarity=0.094 Sum_probs=78.2
Q ss_pred HHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCCh
Q 005881 382 YSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLG 461 (672)
Q Consensus 382 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 461 (672)
...++.-+.+.|-.+.|.++...- ..-.+...++|+++.|.++.+... +...|..|......+|++
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~ 363 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNI 363 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCH
Confidence 445555555555555555543221 223445567888888888876655 556888888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHh
Q 005881 462 REALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKS 541 (672)
Q Consensus 462 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (672)
+-|.+.|.+..+ |..|+-.|...|+.+.-.++.+..... | -++....++.-.|+.++..+++.+
T Consensus 364 ~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 364 ELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888877544 455665666677776666665444321 1 233444455556777777777666
Q ss_pred CC
Q 005881 542 SP 543 (672)
Q Consensus 542 ~~ 543 (672)
.+
T Consensus 428 ~~ 429 (443)
T PF04053_consen 428 TG 429 (443)
T ss_dssp TT
T ss_pred cC
Confidence 54
No 270
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.48 E-value=0.57 Score=42.67 Aligned_cols=97 Identities=11% Similarity=0.075 Sum_probs=70.5
Q ss_pred HHHhhccC--CCCcccHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC------------
Q 005881 131 QFVFDASL--ERNSISWVSLLSSYCQC-----GEHVHGLKIFLLSRKSGVAISEFSCASVLGACAVLG------------ 191 (672)
Q Consensus 131 ~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~------------ 191 (672)
+..|.... ++|..+|-+++..+... +..+-....++.|.+-|+.-|..+|..+|..+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 45555555 56777777777776543 556666677788888899999999998888664422
Q ss_pred ----ChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCC
Q 005881 192 ----NLKVGMQIHSLVFKCALEFDKFVAMGLINLYAKCEK 227 (672)
Q Consensus 192 ----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 227 (672)
+-+-+..++++|..+|+.||..+-..|++++.+.+.
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 233467788888888888888888888888877665
No 271
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.35 E-value=0.99 Score=42.28 Aligned_cols=160 Identities=10% Similarity=-0.064 Sum_probs=114.9
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchH----HHHHHHHHhhccCCh
Q 005881 457 QHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMD----HIASVVHLFACRGQT 532 (672)
Q Consensus 457 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~ 532 (672)
-.|+..+|...|+++++. .+.|-..+...=.+|.-.|+.+.-...++++... -.|+.. +-..+..++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 358899999999999886 5777778888888999999999999999888743 244443 333455667789999
Q ss_pred HHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC----CCchHHHHHHHHHhcCChHHHHHHHH
Q 005881 533 RRAYEFIKS-SPIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPE----DTSAHIMLSNVYAEANMWDETAKVRK 606 (672)
Q Consensus 533 ~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 606 (672)
++|.+.-++ +.+.| |.-+-.+........|+..++.+...+--..=.. -..-|-..+-.|.+.+.++.|.++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 999999876 45555 3334455666678889999999988775432221 12345566777888899999999998
Q ss_pred HHhhCCCccCCce
Q 005881 607 IMKEKSLKKDTGC 619 (672)
Q Consensus 607 ~~~~~~~~~~~~~ 619 (672)
.=.-....++.++
T Consensus 272 ~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 272 REIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHhhccchh
Confidence 6443445555543
No 272
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.24 E-value=2.7 Score=43.38 Aligned_cols=128 Identities=14% Similarity=0.077 Sum_probs=75.5
Q ss_pred HHHHHHHHHcCcCchHHHHHHHHHHHhcC-CCCcc-----cHHHHHHHHHHh----cCCHHHHHHHHhhCCC--CCchhH
Q 005881 381 TYSNILNISSDIPAIEWGKQTHCCIVKPG-FDSNV-----VIGSALVDMYAK----CGRLNDARKVFDHLSS--KNLVSW 448 (672)
Q Consensus 381 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~g~~~~A~~~~~~~~~--~~~~~~ 448 (672)
.+..++....=.|+-+.+.+.+....+.+ +.... -.|..++..++. ....+.|.++++.+.+ |+...|
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lf 269 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALF 269 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHH
Confidence 34556666666778888888777766532 22111 122222322222 3466778888887774 666655
Q ss_pred HHH-HHHHHhcCChHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 005881 449 NTM-LVGYAQHGLGREALEIYSMMQENK--I-KPNDNTFIGVLSACVHIGLVEEGWHYFNSMIR 508 (672)
Q Consensus 449 ~~l-i~~~~~~g~~~~A~~~~~~m~~~g--~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 508 (672)
... .+.+...|+.++|++.|++..... . +.....+.-+...+...+++++|.+.|..+.+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 443 344556788888888888765321 1 12223455566667777777777777777764
No 273
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.18 E-value=0.18 Score=31.87 Aligned_cols=32 Identities=16% Similarity=0.169 Sum_probs=27.7
Q ss_pred CchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 005881 582 TSAHIMLSNVYAEANMWDETAKVRKIMKEKSL 613 (672)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 613 (672)
|..+..++.+|...|++++|.+++++..+..+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 35788999999999999999999999886433
No 274
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.16 E-value=14 Score=39.63 Aligned_cols=117 Identities=12% Similarity=0.031 Sum_probs=59.6
Q ss_pred HHHHHHHHhcCChHHHHHHhhccCCCCcccH----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcc
Q 005881 115 NCLINMYGKCGLLSSAQFVFDASLERNSISW----VSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCASVLGACAVL 190 (672)
Q Consensus 115 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 190 (672)
..-++.+.+..-++-|..+-+.-.. +.... ......+.+.|++++|..-|-+-... +.|. .+++-+-..
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH
Confidence 3444555555555555555543221 11111 12233445667777777666554432 2232 233333333
Q ss_pred CChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHHHhcCC
Q 005881 191 GNLKVGMQIHSLVFKCALEFDKFVAMGLINLYAKCEKLDLASRVFSNIQ 239 (672)
Q Consensus 191 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 239 (672)
.....-...++.+.+.|+. +...-+.|+++|.+.++.++-.++.+...
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 3344444555556666654 33334567777777777777776666554
No 275
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.92 E-value=5.8 Score=34.46 Aligned_cols=126 Identities=10% Similarity=0.030 Sum_probs=76.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHH-----H
Q 005881 448 WNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFI--GVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHI-----A 520 (672)
Q Consensus 448 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~ 520 (672)
|..++.... .+.+ +.....+++....-......+. .+...+...|++++|...++... + .|..+.+ -
T Consensus 57 Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l---~-~t~De~lk~l~~l 130 (207)
T COG2976 57 YQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQAL---A-QTKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH---c-cchhHHHHHHHHH
Confidence 444444433 3333 5555566666542122222222 23445778889999988887655 2 2222222 2
Q ss_pred HHHHHhhccCChHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 005881 521 SVVHLFACRGQTRRAYEFIKSSPIEPNKVV--WRCLLSGCKTHKDLVLGRYAAEKILSTDPE 580 (672)
Q Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 580 (672)
.|.......|.+++|+..++... .++-.. ...-.+.+...|+-++|+..|+++++.+++
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 45667788999999999998764 232222 222345588899999999999999988753
No 276
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.91 E-value=0.91 Score=38.03 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=27.7
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 560 THKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 560 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
..++.++++.++.-+.-+.|+.+..-..-+.++...|+|.+|.++++.+.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 444555555555555555555555555555555555555555555555543
No 277
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.86 E-value=0.16 Score=29.84 Aligned_cols=31 Identities=19% Similarity=0.067 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 005881 550 VWRCLLSGCKTHKDLVLGRYAAEKILSTDPE 580 (672)
Q Consensus 550 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 580 (672)
+|..+...+...|+++.|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555666677777777777777777777773
No 278
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.46 E-value=1 Score=37.06 Aligned_cols=55 Identities=9% Similarity=0.056 Sum_probs=41.8
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 005881 559 KTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKSL 613 (672)
Q Consensus 559 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 613 (672)
...++.+++..+++.+.-+.|+.+..-..-+.++...|+|++|.++++.+.+.+.
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 3467778888888877778887777777777888888888888888887766543
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.01 E-value=0.23 Score=29.70 Aligned_cols=28 Identities=14% Similarity=-0.058 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 005881 550 VWRCLLSGCKTHKDLVLGRYAAEKILST 577 (672)
Q Consensus 550 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 577 (672)
+|..|...|.+.|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888889999999998886544
No 280
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.00 E-value=0.53 Score=43.55 Aligned_cols=101 Identities=13% Similarity=0.150 Sum_probs=69.1
Q ss_pred cCCCCCcchhhHHHHHHhcCCChhHHHHHhccCCC-------CCcchHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCc
Q 005881 4 SGFHPNVITYNHLLLMYVKFSRINDAQKLFDEMPE-------RNVISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNY 76 (672)
Q Consensus 4 ~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 76 (672)
.|...++.+-..++..-....+++++...+-++.. |+...+ ..++.+.+ -++++++.++..=+..|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlllk-y~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHHc-cChHHHHHHHhCcchhccccch
Confidence 35566666666666666667778888877776654 222221 23333333 3677888888888888888888
Q ss_pred ccHHHHHHHHhcCCChhhHHHHHHHHHHhC
Q 005881 77 YTYVGAVSACASRGDARSGKEIHGRMYRSG 106 (672)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 106 (672)
++++.++..+.+.+++..|.++.-.|....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 888888888888888888888877777654
No 281
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.97 E-value=21 Score=38.57 Aligned_cols=49 Identities=22% Similarity=0.171 Sum_probs=33.4
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcc
Q 005881 141 NSISWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCASVLGACAVL 190 (672)
Q Consensus 141 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 190 (672)
|...-=++|-.|.+.|++++|.++...... ........+...+..+...
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhC
Confidence 333444577788899999999998855554 3556667788888888664
No 282
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.03 E-value=25 Score=37.66 Aligned_cols=101 Identities=11% Similarity=0.026 Sum_probs=58.8
Q ss_pred HHHhcCCChhhHHHHHHHHHHhCCCC---ChhHHHHHHHHHHhcCChHHHHHHhhccCCCCcccHHHHHHHHHhcCChHH
Q 005881 84 SACASRGDARSGKEIHGRMYRSGLEL---NSHVSNCLINMYGKCGLLSSAQFVFDASLERNSISWVSLLSSYCQCGEHVH 160 (672)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 160 (672)
+.+.+.+.+++|..+-+... |..| -..+...+|+.+.-.|++++|-...-.|...+..-|.--+..+...++...
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 44445555666655544332 2222 234666777777777888888777777777777777777777776666544
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 005881 161 GLKIFLLSRKSGVAISEFSCASVLGACAV 189 (672)
Q Consensus 161 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 189 (672)
...+ +.....+.+...|..+|..+..
T Consensus 442 Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 442 IAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 3332 2222222445566666666654
No 283
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.91 E-value=5.1 Score=38.28 Aligned_cols=90 Identities=16% Similarity=0.101 Sum_probs=50.9
Q ss_pred HHHHHHHhhCCC-------CCcccHHHHHHHHHhcCC----hhHHHHHHHHHHhCCCCCCh--HHHHHHHHHHcCcCc--
Q 005881 330 EESLKTFDEMDE-------HDVVSWNALIAGHLASCH----YGEAIELLKDMLFEGHCPNL--YTYSNILNISSDIPA-- 394 (672)
Q Consensus 330 ~~a~~~~~~~~~-------~~~~~~~~li~~~~~~~~----~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~-- 394 (672)
.+|..+++.|.+ ++..++..++.. ..++ .+.+..+|+.+...|...+. ...+.++..+.....
T Consensus 120 ~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~ 197 (297)
T PF13170_consen 120 QRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEK 197 (297)
T ss_pred HHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHH
Confidence 445556666654 333445555443 2222 24566777777777776532 344445544443333
Q ss_pred hHHHHHHHHHHHhcCCCCcccHHHHHH
Q 005881 395 IEWGKQTHCCIVKPGFDSNVVIGSALV 421 (672)
Q Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~~~l~ 421 (672)
...+..+++.+.+.|+++....|..+.
T Consensus 198 v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 198 VARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHcCCccccccccHHH
Confidence 346777788888888877766665554
No 284
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.73 E-value=12 Score=33.74 Aligned_cols=50 Identities=14% Similarity=-0.075 Sum_probs=33.1
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCC------CchHHHHHHHHHhcCChHHHHHHHHHH
Q 005881 559 KTHKDLVLGRYAAEKILSTDPED------TSAHIMLSNVYAEANMWDETAKVRKIM 608 (672)
Q Consensus 559 ~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~ 608 (672)
...-++++|+++|++++.+--++ ...+...+++|.+..+++||...+.+-
T Consensus 121 lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 121 LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 35567788888888876543322 234556677788888888887766543
No 285
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.71 E-value=0.39 Score=26.13 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=19.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHH
Q 005881 583 SAHIMLSNVYAEANMWDETAKVRK 606 (672)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~a~~~~~ 606 (672)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456788888999999999988775
No 286
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.61 E-value=6.3 Score=33.39 Aligned_cols=121 Identities=12% Similarity=0.112 Sum_probs=62.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCch-HHHHHH--HHHhhccC
Q 005881 455 YAQHGLGREALEIYSMMQENKIKPNDN-TFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRM-DHIASV--VHLFACRG 530 (672)
Q Consensus 455 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l--~~~~~~~g 530 (672)
+++.+..++|+.-|..+.+.|...=++ ............|+...|...|+++-.+.. .|.. .....| ..++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHhccc
Confidence 456677788888888877766432222 222233345666777777777777653321 2211 111112 22345566
Q ss_pred ChHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 005881 531 QTRRAYEFIKSSPIEPN---KVVWRCLLSGCKTHKDLVLGRYAAEKILS 576 (672)
Q Consensus 531 ~~~~A~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 576 (672)
.+++.....+.+....+ ...-..|.-+-.+.|++..|...|+++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 66666666555432222 12233444445556666666666665544
No 287
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.45 E-value=1.4 Score=41.17 Aligned_cols=61 Identities=15% Similarity=0.103 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 550 VWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 550 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
++..++..+...|+.+.+...++++++.+|-+...|..+...|.+.|+...|+..++++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3444555566666666677777777777776666777777777777777777776666654
No 288
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.23 E-value=0.46 Score=27.72 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=24.9
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 005881 583 SAHIMLSNVYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 611 (672)
..+..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999988753
No 289
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.05 E-value=15 Score=33.61 Aligned_cols=236 Identities=15% Similarity=0.207 Sum_probs=133.5
Q ss_pred cCChHHHHHHHhhCCC--C-----CcccHHHHHHHHHhcCChhHHHHHHHHHHh---CCC--CCChHHHHHHHHHHcCcC
Q 005881 326 CELLEESLKTFDEMDE--H-----DVVSWNALIAGHLASCHYGEAIELLKDMLF---EGH--CPNLYTYSNILNISSDIP 393 (672)
Q Consensus 326 ~~~~~~a~~~~~~~~~--~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~g~--~p~~~t~~~ll~~~~~~~ 393 (672)
...+++|..-|.++.+ + .......+|..+.+.+++++.++.+.+|.. +.+ .-+..+.++++...+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3456667777766543 1 122344567778888888888888877753 111 234556777777766666
Q ss_pred chHHHHHHHHHHHhc-----CCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CC-------chhHHHHHH
Q 005881 394 AIEWGKQTHCCIVKP-----GFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSS--------KN-------LVSWNTMLV 453 (672)
Q Consensus 394 ~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~-------~~~~~~li~ 453 (672)
+.+.-..+++.-.+. +-.....+-..|...|...|.+....+++.++.. .| ...|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 666555555443321 2222333445677777778888888888877651 11 135666677
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh-----hccCcHHHHHHHHHHhHHhhCC--CCc---hHHHHHHH
Q 005881 454 GYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSAC-----VHIGLVEEGWHYFNSMIRDHGI--SPR---MDHIASVV 523 (672)
Q Consensus 454 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~~~--~p~---~~~~~~l~ 523 (672)
.|..+.+-.+-..+|++.+.-.-.........+++-| .+.|.+++|..-|=+..+.+.- .|. ---|-.|.
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 8888888888888888876532222223344555655 4567888775433333323221 221 12355566
Q ss_pred HHhhccC----ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005881 524 HLFACRG----QTRRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVL 566 (672)
Q Consensus 524 ~~~~~~g----~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 566 (672)
.++.+.| +-.+|.. ....|...+.+.++.+|.. +++.+
T Consensus 280 NMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~-NdI~e 321 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQN-NDIIE 321 (440)
T ss_pred HHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhc-ccHHH
Confidence 6666665 1122211 1123555667778887754 34433
No 290
>PRK09687 putative lyase; Provisional
Probab=89.98 E-value=18 Score=34.40 Aligned_cols=72 Identities=7% Similarity=-0.027 Sum_probs=33.3
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 005881 414 VVIGSALVDMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSAC 490 (672)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 490 (672)
..+-...+.++++.|+......+.+.+..++ .....+.++...|.. +|+..+.++.+. .||...-...+.+|
T Consensus 206 ~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 206 EEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred hHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 3333444555555555333333333333333 123455556666653 566666666653 34554444444433
No 291
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.94 E-value=39 Score=38.20 Aligned_cols=158 Identities=15% Similarity=0.149 Sum_probs=84.8
Q ss_pred CChhHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhc----cCCchhHHHHH
Q 005881 226 EKLDLASRVFSNIQLPDLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFAD----VKETIGGRQLH 301 (672)
Q Consensus 226 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~ 301 (672)
++++.|..-+..+. ...|+..+..--+.|.+.+|+.++ .|+...+..+..+|+. ...++.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~----- 957 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDE----- 957 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccH-----
Confidence 45666666665554 445666677777888899998876 5777777666655542 233332
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChH-
Q 005881 302 SLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMDEHDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLY- 380 (672)
Q Consensus 302 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~- 380 (672)
..-+|.++|+.++|.+.+ ...|++.+|+.+-.++... -|..
T Consensus 958 -----------------Aal~Ye~~GklekAl~a~------------------~~~~dWr~~l~~a~ql~~~---~de~~ 999 (1265)
T KOG1920|consen 958 -----------------AALMYERCGKLEKALKAY------------------KECGDWREALSLAAQLSEG---KDELV 999 (1265)
T ss_pred -----------------HHHHHHHhccHHHHHHHH------------------HHhccHHHHHHHHHhhcCC---HHHHH
Confidence 233455666666665443 3345566665555544311 0111
Q ss_pred -HHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCCCc
Q 005881 381 -TYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSKNL 445 (672)
Q Consensus 381 -t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 445 (672)
+-..+..-+...++.-+|-++..+.... ....+..|++...+++|.++-......|.
T Consensus 1000 ~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~~~d~ 1057 (1265)
T KOG1920|consen 1000 ILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAKRDDI 1057 (1265)
T ss_pred HHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcccchH
Confidence 1122333344444444444443333221 13345556777777777777665554433
No 292
>PRK09687 putative lyase; Provisional
Probab=89.93 E-value=18 Score=34.37 Aligned_cols=74 Identities=5% Similarity=-0.058 Sum_probs=38.7
Q ss_pred CchHHHHHHHHHHHccCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 005881 311 SFTFVANTVLDFYSKCELLEESLKTFDEMDEHDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNIS 389 (672)
Q Consensus 311 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 389 (672)
++..+....+.++.+.++..-...+.+.+..++ .....+.++...|.. +|+..+.++... .||...-...+.+|
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 344444555556666665433333333333333 233456666666664 577777777654 34555554444444
No 293
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=89.86 E-value=9.1 Score=30.84 Aligned_cols=54 Identities=17% Similarity=0.062 Sum_probs=21.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHH
Q 005881 180 CASVLGACAVLGNLKVGMQIHSLVFKCALEFDKFVAMGLINLYAKCEKLDLASRV 234 (672)
Q Consensus 180 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 234 (672)
+...+..+...|.-++-..+...+.+ +-++++...-.+..+|.+.|+..++.++
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~el 142 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANEL 142 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHH
Confidence 33444444555555555555555443 2233444444444444444444444333
No 294
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.73 E-value=4.5 Score=35.26 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=38.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhhccCcHHHHHHHHHHhH
Q 005881 447 SWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDN--TFIGVLSACVHIGLVEEGWHYFNSMI 507 (672)
Q Consensus 447 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~ 507 (672)
.+..+..-|++.|+.+.|++.|.++.+....|... .+..+++.+...+++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45556666677777777777777776655444443 35556666666677776666665554
No 295
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.62 E-value=0.73 Score=26.93 Aligned_cols=31 Identities=32% Similarity=0.430 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 005881 447 SWNTMLVGYAQHGLGREALEIYSMMQENKIKPN 479 (672)
Q Consensus 447 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 479 (672)
+|..+...|...|++++|+..|++.++ +.|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 566667777777777777777777766 3444
No 296
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=89.47 E-value=3 Score=27.54 Aligned_cols=51 Identities=6% Similarity=0.048 Sum_probs=38.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCCceeEEEeCCEEEEEEeccccCCChHHHHHHHHHHHHHHHhCCc
Q 005881 584 AHIMLSNVYAEANMWDETAKVRKIMKEKSLKKDTGCSWTELQNKMHYFSTSRFAQFQGIDLHEVMNQLSVHLFDGGY 660 (672)
Q Consensus 584 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~ 660 (672)
....++-.+.+.|++++|.+..+.+.+ ..|...++.+....+..++.+.|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccCC
Confidence 355678889999999999999999875 366667776666677778888774
No 297
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.32 E-value=3.8 Score=38.29 Aligned_cols=57 Identities=16% Similarity=0.328 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005881 416 IGSALVDMYAKCGRLNDARKVFDHLSS---KNLVSWNTMLVGYAQHGLGREALEIYSMMQ 472 (672)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 472 (672)
++..++..+..+|+.+.+.+.++++.. -+...|..+|.+|.+.|+...|+..|+++.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 344455555555555555555555442 233355555555555555555555555443
No 298
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.29 E-value=30 Score=35.90 Aligned_cols=129 Identities=11% Similarity=0.118 Sum_probs=87.0
Q ss_pred CcchHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCcc-cHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHHHH
Q 005881 40 NVISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNYY-TYVGAVSACASRGDARSGKEIHGRMYRSGLELNSHVSNCLI 118 (672)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 118 (672)
+...|+.+|.---+....+.+..++..++.. -|..+ -|.....-=.+.|..+.+.++|++-+.. ++.+...|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 4556777776555555556667777777643 34444 2333333345778888889999887764 456777777766
Q ss_pred HHHHh-cCChHHHHHHhhccCC------CCcccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005881 119 NMYGK-CGLLSSAQFVFDASLE------RNSISWVSLLSSYCQCGEHVHGLKIFLLSRKS 171 (672)
Q Consensus 119 ~~~~~-~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (672)
..+.. .|+.+...+.|+.... .+...|...|.--..++++.....+|++..+.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 65544 4677777777776543 24556888888888888899999999888774
No 299
>PRK12798 chemotaxis protein; Reviewed
Probab=89.24 E-value=24 Score=34.90 Aligned_cols=206 Identities=15% Similarity=0.152 Sum_probs=138.3
Q ss_pred cCCHHHHHHHHhhCCC----CCchhHHHHHHHH-HhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhhccCcHH
Q 005881 427 CGRLNDARKVFDHLSS----KNLVSWNTMLVGY-AQHGLGREALEIYSMMQENKIKPND----NTFIGVLSACVHIGLVE 497 (672)
Q Consensus 427 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~ 497 (672)
.|+.+++.+.+..+.. +....|-.|+.+- ....++.+|+++|++..- .-|-. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5999999999998873 3444666666654 455689999999998876 34443 34555555678889999
Q ss_pred HHHHHHHHhHHhhCCCCchHHH-HHHHHHhhc---cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005881 498 EGWHYFNSMIRDHGISPRMDHI-ASVVHLFAC---RGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEK 573 (672)
Q Consensus 498 ~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~---~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 573 (672)
++..+-....+.+...|-...+ ..++..+.+ .-..+.-.+++..|.-.-....|..+...-...|+.+.|.-..++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 9988888887777777754333 333334333 334445555666665333455788888888999999999999999
Q ss_pred HhcCCCCCCchHHHHHHHHHh-----cCChHHHHHHHHHHhhCCCccCCceeEEEeCCEEEEEEeccccCCChHHHHHHH
Q 005881 574 ILSTDPEDTSAHIMLSNVYAE-----ANMWDETAKVRKIMKEKSLKKDTGCSWTELQNKMHYFSTSRFAQFQGIDLHEVM 648 (672)
Q Consensus 574 ~~~~~p~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 648 (672)
+..+.. ....-...+.+|.. ..+.+++.+.+..+.. +..+|....+.+..
T Consensus 283 A~~L~~-~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~------------------------~~L~~~Dr~Ll~AA 337 (421)
T PRK12798 283 ALKLAD-PDSADAARARLYRGAALVASDDAESALEELSQIDR------------------------DKLSERDRALLEAA 337 (421)
T ss_pred HHHhcc-CCCcchHHHHHHHHHHccCcccHHHHHHHHhcCCh------------------------hhCChhhHHHHHHH
Confidence 998874 34444455555543 3456666666665432 24567777777666
Q ss_pred HHHHHHHHhCC
Q 005881 649 NQLSVHLFDGG 659 (672)
Q Consensus 649 ~~~~~~~~~~g 659 (672)
..+-..+.+..
T Consensus 338 ~~va~~V~~~p 348 (421)
T PRK12798 338 RSVARQVRRAP 348 (421)
T ss_pred HHHHHHHhcCc
Confidence 66777776654
No 300
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.15 E-value=45 Score=37.78 Aligned_cols=115 Identities=15% Similarity=0.119 Sum_probs=62.5
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHH
Q 005881 421 VDMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGW 500 (672)
Q Consensus 421 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 500 (672)
++.--+.|.+.+|..++..-.+.-...|.+...-+...+.+++|.-.|+..-+ ..-.+.+|...|+|.+|.
T Consensus 915 ~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l 985 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREAL 985 (1265)
T ss_pred HHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHH
Confidence 33334445555555444322222222344444444556677777766665432 123566777788888888
Q ss_pred HHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhCCCCC
Q 005881 501 HYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSSPIEP 546 (672)
Q Consensus 501 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 546 (672)
.+...+.. +..--..+-..|+.-+...++.-+|-++.++...+|
T Consensus 986 ~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~ 1029 (1265)
T KOG1920|consen 986 SLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP 1029 (1265)
T ss_pred HHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH
Confidence 87765531 000011233567777788888888888777654344
No 301
>PRK10941 hypothetical protein; Provisional
Probab=89.08 E-value=3.2 Score=38.84 Aligned_cols=61 Identities=21% Similarity=0.171 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 005881 551 WRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 551 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 611 (672)
.+.+-.++.+.++++.|..+.+.++.+.|+++.-+.-.+-+|.+.|.+..|..-++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3556677899999999999999999999999999999999999999999999999887653
No 302
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.03 E-value=2.8 Score=36.50 Aligned_cols=64 Identities=14% Similarity=0.104 Sum_probs=51.9
Q ss_pred chHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCc--ccHHHHHHHHhcCCChhhHHHHHHHHHHh
Q 005881 42 ISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNY--YTYVGAVSACASRGDARSGKEIHGRMYRS 105 (672)
Q Consensus 42 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 105 (672)
..+..+...|++.|+.++|++.|.++++....|.. ..+..+++.+...+++..+..........
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35778888999999999999999999887655554 35778888888899999888888777665
No 303
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.74 E-value=2.5 Score=37.01 Aligned_cols=70 Identities=11% Similarity=0.083 Sum_probs=50.0
Q ss_pred HHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC----CCchHHHHHHHHHhcCChHHHH
Q 005881 533 RRAYEFIKSSPIEP--NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPE----DTSAHIMLSNVYAEANMWDETA 602 (672)
Q Consensus 533 ~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~ 602 (672)
++|+..|-++.-.| +.......+..|....|.+++++++-+++++.+. |+..+..|+.+|.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45555555443233 3444455566677788999999999999886542 5788999999999999998774
No 304
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.51 E-value=40 Score=36.48 Aligned_cols=49 Identities=12% Similarity=0.153 Sum_probs=29.8
Q ss_pred cCCHHHHHHHHHHHhcCC---CCCC-chH-----HHHHHHHHhcCChHHHHHHHHHHh
Q 005881 561 HKDLVLGRYAAEKILSTD---PEDT-SAH-----IMLSNVYAEANMWDETAKVRKIMK 609 (672)
Q Consensus 561 ~g~~~~a~~~~~~~~~~~---p~~~-~~~-----~~l~~~~~~~g~~~~a~~~~~~~~ 609 (672)
.|+..+.......+..+- |+.. ..| ..+.+.|...|+.++|.....+..
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 567666555554454322 3222 223 256666888899999998887664
No 305
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=88.46 E-value=23 Score=33.68 Aligned_cols=20 Identities=15% Similarity=-0.182 Sum_probs=14.4
Q ss_pred HHHHhcCCHHHHHHHHHHHh
Q 005881 556 SGCKTHKDLVLGRYAAEKIL 575 (672)
Q Consensus 556 ~~~~~~g~~~~a~~~~~~~~ 575 (672)
..+.+.++++.|...|+-++
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 33667788888888887654
No 306
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.27 E-value=0.65 Score=26.79 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 585 HIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 585 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
+..++.+|.+.|++++|.+.++++.+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 45566666667777777777766654
No 307
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.90 E-value=5.9 Score=37.07 Aligned_cols=101 Identities=15% Similarity=0.101 Sum_probs=74.2
Q ss_pred cCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCch-----hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 005881 408 PGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLS-SKNLV-----SWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDN 481 (672)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 481 (672)
.|.+.+..+...++..-....+++++...+-++. +|+.. +-...+.- +..=++++++.++..=++-|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH-HHccChHHHHHHHhCcchhccccchh
Confidence 4555566666777777676788999988887776 33221 11122332 23346789999999999999999999
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHh
Q 005881 482 TFIGVLSACVHIGLVEEGWHYFNSMIRD 509 (672)
Q Consensus 482 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 509 (672)
+++.++..+.+.+++.+|.++...|+..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999888777644
No 308
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.82 E-value=0.46 Score=27.95 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=13.0
Q ss_pred chHHHHHHHHHhhccCChHHHH
Q 005881 515 RMDHIASVVHLFACRGQTRRAY 536 (672)
Q Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~ 536 (672)
+...|..+..+|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4456666666666666666554
No 309
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.82 E-value=2.3 Score=40.06 Aligned_cols=52 Identities=21% Similarity=0.201 Sum_probs=32.9
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHhH
Q 005881 454 GYAQHGLGREALEIYSMMQENKIKP-NDNTFIGVLSACVHIGLVEEGWHYFNSMI 507 (672)
Q Consensus 454 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 507 (672)
-|.++|.+++|+..|.+... +.| |.+++..-..+|.+...+..|..-....+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 45566777777777766665 345 66777777777777666666655544433
No 310
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.65 E-value=21 Score=32.16 Aligned_cols=52 Identities=4% Similarity=-0.126 Sum_probs=27.5
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCch------HH-HHHHHHHhcCChHHHHHHHHHHhh
Q 005881 559 KTHKDLVLGRYAAEKILSTDPEDTSA------HI-MLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 559 ~~~g~~~~a~~~~~~~~~~~p~~~~~------~~-~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
...+++.+|+.+|+++....-+|+-. |. .-+-++.-.++.-.+...+++-.+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 45577888888888876655444322 11 222223333555555555555544
No 311
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.30 E-value=13 Score=32.99 Aligned_cols=126 Identities=13% Similarity=0.078 Sum_probs=78.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCc----hHHHHHH
Q 005881 447 SWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPR----MDHIASV 522 (672)
Q Consensus 447 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l 522 (672)
|.+..++.+.+.+...+++...++-++.. +.|..+-..++..++-.|++++|..-++-.. .+.|+ ...|..+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~l 78 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRHL 78 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHHH
Confidence 34556777888899999999988877753 4445567778888999999999988776554 34443 3555555
Q ss_pred HHHhhccCChHHHH-HHHHh--CCCCC--CHHHHHH-HHHH--HHhcCCHHHHHHHHHHHhcCCCCCCc
Q 005881 523 VHLFACRGQTRRAY-EFIKS--SPIEP--NKVVWRC-LLSG--CKTHKDLVLGRYAAEKILSTDPEDTS 583 (672)
Q Consensus 523 ~~~~~~~g~~~~A~-~~~~~--~~~~p--~~~~~~~-l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~ 583 (672)
+.+ +.+. ++|.. .|.-+ ....|-. ++.+ |..-|..+.+..+-+++++.-|....
T Consensus 79 ir~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 79 IRC-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred HHH-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 554 2222 33432 22111 2334543 3333 33345666677777888887775433
No 312
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.06 E-value=0.71 Score=38.72 Aligned_cols=86 Identities=14% Similarity=0.082 Sum_probs=62.3
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhhccCCCCcccHHHHHHHHHhcCChHH
Q 005881 81 GAVSACASRGDARSGKEIHGRMYRSGLELNSHVSNCLINMYGKCGLLSSAQFVFDASLERNSISWVSLLSSYCQCGEHVH 160 (672)
Q Consensus 81 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 160 (672)
.+++.+.+.+.+......++.+...+...+....+.++..|++.++.+...++++.... .-...++..|-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45667777888888888888888877667788999999999999888888888873322 444566677777777777
Q ss_pred HHHHHHHHH
Q 005881 161 GLKIFLLSR 169 (672)
Q Consensus 161 a~~~~~~m~ 169 (672)
+.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 777666543
No 313
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=86.96 E-value=2.1 Score=28.32 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHH
Q 005881 553 CLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHI 586 (672)
Q Consensus 553 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 586 (672)
.+.-++.+.|+++.|+...+.+++++|+|..+..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4566789999999999999999999998755433
No 314
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.93 E-value=27 Score=32.65 Aligned_cols=57 Identities=11% Similarity=-0.093 Sum_probs=51.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 005881 553 CLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMK 609 (672)
Q Consensus 553 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 609 (672)
-....|...|.+.+|.++.++++.++|-+...+..+.++|+..|+--.|.+-++++.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344568899999999999999999999999999999999999999888888887775
No 315
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.70 E-value=16 Score=34.97 Aligned_cols=49 Identities=18% Similarity=0.185 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHhCCCCCChHHHHHHHHHHcC--cC----chHHHHHHHHHHHhcC
Q 005881 361 GEAIELLKDMLFEGHCPNLYTYSNILNISSD--IP----AIEWGKQTHCCIVKPG 409 (672)
Q Consensus 361 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~ 409 (672)
++.+.+++.|.+.|.+-+..+|.+....... .. ....+..+++.|++..
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 4556778888888888888777664433322 22 2335566666666553
No 316
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.31 E-value=1.6 Score=25.34 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=25.2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 583 SAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998765
No 317
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=85.90 E-value=11 Score=30.58 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=14.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 005881 554 LLSGCKTHKDLVLGRYAAEKILSTDPE 580 (672)
Q Consensus 554 l~~~~~~~g~~~~a~~~~~~~~~~~p~ 580 (672)
|.-++.+.++++.++++.+.+++.+|+
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 334455555555555555555555553
No 318
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.78 E-value=15 Score=30.51 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=35.0
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCch-HHHHHHHHHhhccCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 005881 492 HIGLVEEGWHYFNSMIRDHGISPRM-DHIASVVHLFACRGQTRRAYEFIKSSPIEP-NKVVWRCLLSGCKT 560 (672)
Q Consensus 492 ~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~ 560 (672)
..++.+++..+++.|. -+.|+. +.-..-+-.+...|++.+|..+|+++...+ ....-..|+..|..
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 3566777777776665 445532 222223444566777777777777664333 32323344444443
No 319
>PHA02875 ankyrin repeat protein; Provisional
Probab=85.60 E-value=45 Score=34.02 Aligned_cols=196 Identities=11% Similarity=0.001 Sum_probs=82.3
Q ss_pred HHhHhCCCCCCccc--HHHHHHHHhcCCChhhHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcCChHHHHHHhhccCCC
Q 005881 65 RLMVCCVLEPNYYT--YVGAVSACASRGDARSGKEIHGRMYRSGLELNSH--VSNCLINMYGKCGLLSSAQFVFDASLER 140 (672)
Q Consensus 65 ~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~ 140 (672)
+.+.+.|..|+... -.+.+..++..|+.+ +.+.+.+.|..|+.. .....+...++.|+.+.+..+++.....
T Consensus 19 ~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~ 94 (413)
T PHA02875 19 RRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFA 94 (413)
T ss_pred HHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcc
Confidence 33334455554422 234445555555554 333444455444321 1122344455667777666666543321
Q ss_pred ----CcccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhh--HHHHHHHHhccCChHHHHHHHHHHHHhcCCCcHH-
Q 005881 141 ----NSISWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFS--CASVLGACAVLGNLKVGMQIHSLVFKCALEFDKF- 213 (672)
Q Consensus 141 ----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 213 (672)
+..-++. +...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+.+. .+++.|..++..
T Consensus 95 ~~~~~~~g~tp-L~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~----~Ll~~g~~~~~~d 165 (413)
T PHA02875 95 DDVFYKDGMTP-LHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE----LLIDHKACLDIED 165 (413)
T ss_pred cccccCCCCCH-HHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHhcCCCCCCCC
Confidence 1111222 2233344443 34444555565554321 123344444555554333 333444332211
Q ss_pred -HHHHHHHHhhcCCChhHHHHHHhcCCCCCcch---HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 005881 214 -VAMGLINLYAKCEKLDLASRVFSNIQLPDLTA---WSALIGGYAQLGKACEAIDLFVKMFSSGLMPS 277 (672)
Q Consensus 214 -~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 277 (672)
...+-+...+..|+.+-+.-+++.-..++... ..+.+...+..|+.+ +.+.+.+.|..++
T Consensus 166 ~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n 229 (413)
T PHA02875 166 CCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCN 229 (413)
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcc
Confidence 11122333344556555555555444333221 123333334444443 3344444555554
No 320
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.53 E-value=24 Score=30.89 Aligned_cols=90 Identities=8% Similarity=-0.050 Sum_probs=64.0
Q ss_pred HHHHhhccCChHHHHHHHHhCCCCCCHHHHHHH-----HHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcC
Q 005881 522 VVHLFACRGQTRRAYEFIKSSPIEPNKVVWRCL-----LSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEAN 596 (672)
Q Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l-----~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 596 (672)
+...+..+|++++|...++..--.|....+..+ .+.....|.++.|...++...+-.= .+..-...++++...|
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg 173 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcC
Confidence 355678899999999999864334444444443 3446778999999888765432211 2233457899999999
Q ss_pred ChHHHHHHHHHHhhCC
Q 005881 597 MWDETAKVRKIMKEKS 612 (672)
Q Consensus 597 ~~~~a~~~~~~~~~~~ 612 (672)
+-++|+.-|++..+.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 9999999999988754
No 321
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.45 E-value=22 Score=30.40 Aligned_cols=54 Identities=9% Similarity=0.070 Sum_probs=29.8
Q ss_pred HHHHHHHHccCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 005881 317 NTVLDFYSKCELLEESLKTFDEMDEHDVVSWNALIAGHLASCHYGEAIELLKDM 370 (672)
Q Consensus 317 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 370 (672)
..+++.+...|++-+|.++.+.....+......++.+-.+.++...=..+|+-.
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345556666777777777766654444444455555555555544444444433
No 322
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.40 E-value=1.6 Score=26.80 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=23.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 583 SAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
.++..|+.+|...|++++|.+++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4577899999999999999999988764
No 323
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=85.06 E-value=1.6 Score=24.36 Aligned_cols=28 Identities=25% Similarity=0.042 Sum_probs=14.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 005881 552 RCLLSGCKTHKDLVLGRYAAEKILSTDP 579 (672)
Q Consensus 552 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p 579 (672)
..+...+...|+++.|...+++++++.|
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3344444455555555555555555544
No 324
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.85 E-value=7.3 Score=29.68 Aligned_cols=60 Identities=10% Similarity=0.122 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 005881 463 EALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVH 524 (672)
Q Consensus 463 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 524 (672)
+..+-++.+....+-|++....+.+.||.+.+++..|.++|+.+..+.+.. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 455566666777788999999999999999999999999998887654433 335655544
No 325
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.73 E-value=1.5 Score=25.24 Aligned_cols=28 Identities=11% Similarity=0.005 Sum_probs=22.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 005881 553 CLLSGCKTHKDLVLGRYAAEKILSTDPE 580 (672)
Q Consensus 553 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 580 (672)
.+...+...|+.++|...++++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556677789999999999999988885
No 326
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.66 E-value=30 Score=31.20 Aligned_cols=60 Identities=23% Similarity=0.248 Sum_probs=36.2
Q ss_pred HhhccCChHHHHHHHHhCC---CCCCHHHHHH---HH--HHHHhc-CCHHHHHHHHHHHhcCCCCCCch
Q 005881 525 LFACRGQTRRAYEFIKSSP---IEPNKVVWRC---LL--SGCKTH-KDLVLGRYAAEKILSTDPEDTSA 584 (672)
Q Consensus 525 ~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~---l~--~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~ 584 (672)
.-+..+++.+|.++|+++. ...+..-|.. ++ ..|.-. .|.-.+...+++-.+++|.-...
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 3355677777887776531 2222222321 22 224444 78888899999999999975443
No 327
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.54 E-value=24 Score=30.07 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=66.2
Q ss_pred HHhcCCHHHHHHHHhhCCCCCchhHHHHH-----HHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHH--HHHhhccCc
Q 005881 424 YAKCGRLNDARKVFDHLSSKNLVSWNTML-----VGYAQHGLGREALEIYSMMQENKIKPNDN-TFIGV--LSACVHIGL 495 (672)
Q Consensus 424 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l--l~~~~~~g~ 495 (672)
+++.+..++|..-|..+.+.+.-.|-.|. ....+.|+...|...|++.-...-.|-.. -...| ...+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 34566777777777777765555554432 33456677777777777766543333332 11111 223456677
Q ss_pred HHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhC
Q 005881 496 VEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSS 542 (672)
Q Consensus 496 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (672)
+++.....+-+.. .+.+.....-..|.-+-.+.|++..|.+.|..+
T Consensus 148 y~dV~srvepLa~-d~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 148 YDDVSSRVEPLAG-DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHHHhhhccC-CCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 7776666655531 121222334445666666777777777777654
No 328
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=84.44 E-value=3.2 Score=35.55 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcC
Q 005881 564 LVLGRYAAEKILSTDPEDTSAHIMLSNVYAEAN 596 (672)
Q Consensus 564 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 596 (672)
+++|..-+++++.++|+...++.+++++|...+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 456777788888888888888888888877765
No 329
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.16 E-value=9 Score=28.86 Aligned_cols=62 Identities=11% Similarity=0.165 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 005881 461 GREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVH 524 (672)
Q Consensus 461 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 524 (672)
.-++.+-++.+....+-|++....+.+.||.+.+++..|.++|+....+.+. +...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 3355666677777778899999999999999999999999999877644332 3445554443
No 330
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=83.30 E-value=3.3 Score=31.23 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=25.6
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 569 YAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 569 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
..+++.++.+|+|......++..+...|++++|.+.+-.+.+
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345555666666666666666666666777766666665554
No 331
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.21 E-value=1.4 Score=37.00 Aligned_cols=85 Identities=15% Similarity=0.075 Sum_probs=60.0
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHH
Q 005881 183 VLGACAVLGNLKVGMQIHSLVFKCALEFDKFVAMGLINLYAKCEKLDLASRVFSNIQLPDLTAWSALIGGYAQLGKACEA 262 (672)
Q Consensus 183 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 262 (672)
+++.+.+.+.+.....+++.+.+.+...+....+.++..|++.++.+...++++.... .-...++..+.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4556666677777777777777766667788889999999999888888888874332 3345666777777777777
Q ss_pred HHHHHHHH
Q 005881 263 IDLFVKMF 270 (672)
Q Consensus 263 ~~~~~~m~ 270 (672)
.-++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 77776653
No 332
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.02 E-value=5.1 Score=35.40 Aligned_cols=64 Identities=11% Similarity=0.033 Sum_probs=49.1
Q ss_pred HHHHHHhhccCChHHHHHHHH-hCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 005881 520 ASVVHLFACRGQTRRAYEFIK-SSPIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTS 583 (672)
Q Consensus 520 ~~l~~~~~~~g~~~~A~~~~~-~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 583 (672)
..-+..+.+.+++.+|+...+ +...+| |......++..++-.|++++|..-++-+-++.|++..
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 344567778888888888765 355566 5556777888888899999999999988889887543
No 333
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=82.43 E-value=2.8 Score=36.83 Aligned_cols=91 Identities=16% Similarity=0.142 Sum_probs=56.0
Q ss_pred HhhccCcHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHhhccCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHH
Q 005881 489 ACVHIGLVEEGWHYFNSMIRDHGISPR-MDHIASVVHLFACRGQTRRAYEFIKSS-PIEPNKV-VWRCLLSGCKTHKDLV 565 (672)
Q Consensus 489 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~ 565 (672)
.|-+.|.+.-|.--|.... .+.|+ +++++.|.--+...|+++.|.+.|+.. .+.|... +...-.-++.-.|++.
T Consensus 74 lYDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~ 150 (297)
T COG4785 74 LYDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYK 150 (297)
T ss_pred hhhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchH
Confidence 3555666666766666544 56665 467777777777788888888877753 3444221 2211112233457777
Q ss_pred HHHHHHHHHhcCCCCCC
Q 005881 566 LGRYAAEKILSTDPEDT 582 (672)
Q Consensus 566 ~a~~~~~~~~~~~p~~~ 582 (672)
.|.+-+.+-...+|+||
T Consensus 151 LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 151 LAQDDLLAFYQDDPNDP 167 (297)
T ss_pred hhHHHHHHHHhcCCCCh
Confidence 77777777777777665
No 334
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.39 E-value=8.4 Score=29.02 Aligned_cols=61 Identities=11% Similarity=0.035 Sum_probs=44.4
Q ss_pred hhHHHHHHHhHhCCCCCCcccHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHHHHH
Q 005881 58 EVALNYFRLMVCCVLEPNYYTYVGAVSACASRGDARSGKEIHGRMYRSGLELNSHVSNCLIN 119 (672)
Q Consensus 58 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 119 (672)
-++.+-++.+....+-|++....+.+++|-+.+++..|..+++-++... ..+..+|..+++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 3556666666667788899999999999999999999999998777432 124446665554
No 335
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=82.37 E-value=57 Score=32.64 Aligned_cols=81 Identities=12% Similarity=0.161 Sum_probs=46.2
Q ss_pred CCCcccHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhhccCCC--CcccHHHHHH
Q 005881 73 EPNYYTYVGAVSACASRGDARSGKEIHGRMYRSGLELNSHVSNCLINMYGKCGLLSSAQFVFDASLER--NSISWVSLLS 150 (672)
Q Consensus 73 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~li~ 150 (672)
|.|..+|-.+++-+...+..++..+++++|..- ++--+.+|...+++=....++...+.+|.+.... +...|...+.
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~lYl~ 117 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWMLYLE 117 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHHHHH
Confidence 345556666777776666666666666666432 2223445555555555556666666666655443 4555665555
Q ss_pred HHHh
Q 005881 151 SYCQ 154 (672)
Q Consensus 151 ~~~~ 154 (672)
.-.+
T Consensus 118 YIRr 121 (660)
T COG5107 118 YIRR 121 (660)
T ss_pred HHHh
Confidence 4433
No 336
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.30 E-value=25 Score=36.40 Aligned_cols=99 Identities=21% Similarity=0.176 Sum_probs=57.5
Q ss_pred cCCChhHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCchhHHHHHHH
Q 005881 224 KCEKLDLASRVFSNIQLPDLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVKETIGGRQLHSL 303 (672)
Q Consensus 224 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 303 (672)
+.|+++.|.++..+. .+..-|..|-++..+.+++..|.+.|..... |..|+-.+...|+.+....+-..
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 455666665554433 3555677777777788888777777766543 44555566666666555555555
Q ss_pred HHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhC
Q 005881 304 IIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEM 339 (672)
Q Consensus 304 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 339 (672)
..+.|.. |....+|...|+++++.+++.+-
T Consensus 718 ~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 718 AKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 4444422 22333455566666666665443
No 337
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=82.09 E-value=4.9 Score=33.21 Aligned_cols=82 Identities=5% Similarity=0.016 Sum_probs=63.4
Q ss_pred hHHHHHHHHHcCCCchhHHHHHHHhHhCC-----CCCCcccHHHHHHHHhcCCC-hhhHHHHHHHHHHhCCCCChhHHHH
Q 005881 43 SWSALISGFSQIGMPEVALNYFRLMVCCV-----LEPNYYTYVGAVSACASRGD-ARSGKEIHGRMYRSGLELNSHVSNC 116 (672)
Q Consensus 43 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~ 116 (672)
..|+++.-....+++...+.+++.+.... -..+..+|.+++++..+... --.+..+|..+.+.+.++++.-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 36788888888888888888888774321 13456689999999977766 5567888999998888999999999
Q ss_pred HHHHHHhc
Q 005881 117 LINMYGKC 124 (672)
Q Consensus 117 li~~~~~~ 124 (672)
+|.++.+-
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 99987664
No 338
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=82.01 E-value=51 Score=31.90 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=13.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHH
Q 005881 584 AHIMLSNVYAEANMWDETAKVRK 606 (672)
Q Consensus 584 ~~~~l~~~~~~~g~~~~a~~~~~ 606 (672)
.+..++.+|...|.-++-..-+.
T Consensus 333 ~hcrla~iYrs~gl~d~~~~h~~ 355 (518)
T KOG1941|consen 333 LHCRLASIYRSKGLQDELRAHVV 355 (518)
T ss_pred HHHHHHHHHHhccchhHHHHHHH
Confidence 34466777777776665444433
No 339
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.84 E-value=81 Score=34.06 Aligned_cols=38 Identities=16% Similarity=0.307 Sum_probs=23.7
Q ss_pred ccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005881 528 CRGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGR 568 (672)
Q Consensus 528 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 568 (672)
+-++.++|.++.+.- .|...|..|+.-+...-.+-.+.
T Consensus 673 el~die~AIefvKeq---~D~eLWe~LI~~~ldkPe~~~~l 710 (846)
T KOG2066|consen 673 ELRDIEKAIEFVKEQ---DDSELWEDLINYSLDKPEFIKAL 710 (846)
T ss_pred HhhCHHHHHHHHHhc---CCHHHHHHHHHHhhcCcHHHHHH
Confidence 344555555555543 48888999988876655544444
No 340
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=81.73 E-value=1.5e+02 Score=36.94 Aligned_cols=305 Identities=11% Similarity=0.009 Sum_probs=155.4
Q ss_pred HhhccCCchhHHHHHHHHHHh--CCCCchHHHHHHHHHHHccCChHHHHHHHhh-CCCCCcccHHHHHHHHHhcCChhHH
Q 005881 287 AFADVKETIGGRQLHSLIIKM--GFSSFTFVANTVLDFYSKCELLEESLKTFDE-MDEHDVVSWNALIAGHLASCHYGEA 363 (672)
Q Consensus 287 ~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A 363 (672)
+-.+.+.+..|...++.-... ........+-.+...|...+++|....+... ..+++ ...-|.-....|++..|
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da 1468 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADA 1468 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHH
Confidence 334445555555555542000 0011122333444577777777776666552 32232 22334445667888888
Q ss_pred HHHHHHHHhCCCCCC-hHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 005881 364 IELLKDMLFEGHCPN-LYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSS 442 (672)
Q Consensus 364 ~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 442 (672)
...|+.+.+. .|+ ..+++.++......+.+....-..+-.....-+-....++.=+.+--+.++++...+... .
T Consensus 1469 ~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~ 1543 (2382)
T KOG0890|consen 1469 AACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS---D 1543 (2382)
T ss_pred HHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh---c
Confidence 8888888765 444 556776666666666666555543333322111111122222333355666666666555 4
Q ss_pred CCchhHHHH--HHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHH----------HhHH
Q 005881 443 KNLVSWNTM--LVGYAQHG--LGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFN----------SMIR 508 (672)
Q Consensus 443 ~~~~~~~~l--i~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~----------~~~~ 508 (672)
.+..+|... +..+.+.. +.-.-.+..+.+++.-+.| +.+|+..|.+..+.++.- ....
T Consensus 1544 ~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~ 1615 (2382)
T KOG0890|consen 1544 RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSIEE 1615 (2382)
T ss_pred ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556554 22222222 2212223444443321111 112222222111111111 1111
Q ss_pred hhCCCCch------HHHHHHHHHhhccCChHHHHHHH---Hh------C--CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 005881 509 DHGISPRM------DHIASVVHLFACRGQTRRAYEFI---KS------S--PIEP-NKVVWRCLLSGCKTHKDLVLGRYA 570 (672)
Q Consensus 509 ~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~---~~------~--~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 570 (672)
..+..++. +.|..- +.+.+....+.+-+ ++ | ..+- -..+|......++..|.++.|..+
T Consensus 1616 l~~~s~~~~s~~~sd~W~~R---l~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1616 LKKVSYDEDSANNSDNWKNR---LERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred hhccCccccccccchhHHHH---HHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 12333322 222222 22222222232222 11 1 1111 245789999999999999999999
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 005881 571 AEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKS 612 (672)
Q Consensus 571 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 612 (672)
.-++.+.. -+..+.-.+..+...|+-..|..+++...+..
T Consensus 1693 ll~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1693 LLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 88888877 46889999999999999999999999877543
No 341
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=81.66 E-value=64 Score=32.81 Aligned_cols=29 Identities=3% Similarity=-0.114 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005881 547 NKVVWRCLLSGCKTHKDLVLGRYAAEKIL 575 (672)
Q Consensus 547 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 575 (672)
|+..|...+.--..+|..+.+-.++.++.
T Consensus 529 d~~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 529 DSDLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred ChHHHHHHHHhhccCCCcccccHHHHHHH
Confidence 44455555555455555555555555554
No 342
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.52 E-value=8.5 Score=29.35 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=33.1
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHH
Q 005881 541 SSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIML 588 (672)
Q Consensus 541 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 588 (672)
.+.+.|++....+.+.+|++.+|+..|.++++-+-....+....|-.+
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~ 85 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYI 85 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHH
Confidence 456789999999999999999999999999998764443333355544
No 343
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.17 E-value=3.5 Score=25.23 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005881 446 VSWNTMLVGYAQHGLGREALEIYSMMQE 473 (672)
Q Consensus 446 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 473 (672)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566677777777777777777766654
No 344
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.11 E-value=28 Score=37.52 Aligned_cols=18 Identities=17% Similarity=0.244 Sum_probs=9.5
Q ss_pred HHhcCChHHHHHHHHHHh
Q 005881 592 YAEANMWDETAKVRKIMK 609 (672)
Q Consensus 592 ~~~~g~~~~a~~~~~~~~ 609 (672)
|--+|+++.|.+++....
T Consensus 437 y~La~~~d~vl~lln~~L 454 (613)
T PF04097_consen 437 YHLAEEYDKVLSLLNRLL 454 (613)
T ss_dssp HHHTT-HHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 334456666666666554
No 345
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.97 E-value=19 Score=35.91 Aligned_cols=86 Identities=20% Similarity=0.216 Sum_probs=41.4
Q ss_pred HhhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHH
Q 005881 525 LFACRGQTRRAYEFIKSSP--IEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETA 602 (672)
Q Consensus 525 ~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 602 (672)
.+...|.+|.+.+.+.... +.....+..+++......|+.+.|....+.++..+-++++.....+-.-...|-++++.
T Consensus 332 i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHH
Confidence 3344555555555544321 11223344445555555555556655555555554444444333333334445555555
Q ss_pred HHHHHHhh
Q 005881 603 KVRKIMKE 610 (672)
Q Consensus 603 ~~~~~~~~ 610 (672)
-.|++...
T Consensus 412 ~~wk~~~~ 419 (831)
T PRK15180 412 HYWKRVLL 419 (831)
T ss_pred HHHHHHhc
Confidence 55555543
No 346
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=80.28 E-value=3.1 Score=23.66 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 005881 562 KDLVLGRYAAEKILSTDPEDTSAHIMLSNV 591 (672)
Q Consensus 562 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 591 (672)
|+.+.+..+|++++...|.++..|..++..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567889999999999999888888776654
No 347
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.94 E-value=13 Score=32.70 Aligned_cols=74 Identities=9% Similarity=0.045 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCC--CCchHHHHHHHHHhhccCChHHHH
Q 005881 462 REALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGI--SPRMDHIASVVHLFACRGQTRRAY 536 (672)
Q Consensus 462 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 536 (672)
+.|.+.|-++...+.--+......|. .|....+.++++.++.+..+...- .+|++.+.+|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 56677777776665433333333333 333356777777777666543221 345666777777777777666653
No 348
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.87 E-value=1.4 Score=41.57 Aligned_cols=87 Identities=13% Similarity=0.124 Sum_probs=56.0
Q ss_pred cCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 005881 529 RGQTRRAYEFIKS-SPIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRK 606 (672)
Q Consensus 529 ~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 606 (672)
.|.+++|++.+.. +...| ....+..-...+.+.++...|+.-+..+++++|+...-|-..+.+....|+|++|...+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 4445555555532 23333 222333334456667777777777778888888777777777777777888888888887
Q ss_pred HHhhCCCcc
Q 005881 607 IMKEKSLKK 615 (672)
Q Consensus 607 ~~~~~~~~~ 615 (672)
...+.+...
T Consensus 207 ~a~kld~dE 215 (377)
T KOG1308|consen 207 LACKLDYDE 215 (377)
T ss_pred HHHhccccH
Confidence 777666543
No 349
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=79.86 E-value=3.8 Score=38.05 Aligned_cols=63 Identities=14% Similarity=0.165 Sum_probs=38.4
Q ss_pred hhccCChHHHHHHHHh-CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHH
Q 005881 526 FACRGQTRRAYEFIKS-SPIEPN-KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIML 588 (672)
Q Consensus 526 ~~~~g~~~~A~~~~~~-~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 588 (672)
..+.|+.++|..+|+. +...|+ +.....+......++++-+|.++|-+++.+.|.|..+..+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence 3467777777777764 444553 33333333334455677777777777777777776655543
No 350
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=79.84 E-value=38 Score=29.04 Aligned_cols=46 Identities=11% Similarity=0.115 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHH
Q 005881 418 SALVDMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGRE 463 (672)
Q Consensus 418 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 463 (672)
..+++.+...|++-+|.++.+.....+...-..++.+-...+|...
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~l 138 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQL 138 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHH
Confidence 4455566666777777666665443333333344444444444433
No 351
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.76 E-value=25 Score=26.82 Aligned_cols=61 Identities=18% Similarity=0.134 Sum_probs=45.1
Q ss_pred HHHHHccCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHH
Q 005881 320 LDFYSKCELLEESLKTFDEMDEHDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYS 383 (672)
Q Consensus 320 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~ 383 (672)
+..+...|++++|..+.+....||...|-+|-. .+.|..+++..-+.+|..+| .|...+|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 345667899999999999998899998877754 36677777777777777766 45555543
No 352
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=79.75 E-value=22 Score=31.18 Aligned_cols=69 Identities=13% Similarity=0.071 Sum_probs=37.1
Q ss_pred HHHhhccCChHHHHHHHH-hCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 005881 523 VHLFACRGQTRRAYEFIK-SSPIEPNKV-VWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNV 591 (672)
Q Consensus 523 ~~~~~~~g~~~~A~~~~~-~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 591 (672)
..++.+.+.++.|++--. .+.+.|... ...--..+|.+...++.|+.-|.++++.+|....+-...+++
T Consensus 141 aaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 141 AAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 344445555555544332 233333211 222223456667778888888888888888655544444444
No 353
>PHA02875 ankyrin repeat protein; Provisional
Probab=78.86 E-value=80 Score=32.19 Aligned_cols=42 Identities=10% Similarity=0.114 Sum_probs=19.7
Q ss_pred HHHHHHhcCCCcHHH---HHHHHHHhhcCCChhHHHHHHhcCCCC
Q 005881 200 HSLVFKCALEFDKFV---AMGLINLYAKCEKLDLASRVFSNIQLP 241 (672)
Q Consensus 200 ~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~ 241 (672)
.+.+++.|..++... ..+++...+..|+.+-+.-+++.-..+
T Consensus 184 v~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~ 228 (413)
T PHA02875 184 CKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADC 228 (413)
T ss_pred HHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCc
Confidence 344445555444321 123444444556666665555554433
No 354
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.74 E-value=54 Score=34.14 Aligned_cols=150 Identities=11% Similarity=0.021 Sum_probs=89.4
Q ss_pred hcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHH
Q 005881 426 KCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNS 505 (672)
Q Consensus 426 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 505 (672)
-.|+++.|..++..+.++ .-+.++.-+..+|-.++|+++ .+|+.-.- ....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rF---elal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRF---ELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhh---hhhhhcCcHHHHHHHHHh
Confidence 346677776666655532 234455556666766666653 34433211 123456778887776543
Q ss_pred hHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchH
Q 005881 506 MIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAH 585 (672)
Q Consensus 506 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 585 (672)
.. +..-|..|.++....|++..|.+.|.+.. -|.+|+-.+...|+.+.-..+...+-+...+|..
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~A-- 727 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLA-- 727 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccchH--
Confidence 32 44567888888888888888888887642 2455666666667766555555555554443322
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 005881 586 IMLSNVYAEANMWDETAKVRKIM 608 (672)
Q Consensus 586 ~~l~~~~~~~g~~~~a~~~~~~~ 608 (672)
-.+|...|++++..+++..-
T Consensus 728 ---F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 728 ---FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ---HHHHHHcCCHHHHHHHHHhc
Confidence 23466678888777776643
No 355
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=78.25 E-value=64 Score=30.72 Aligned_cols=61 Identities=18% Similarity=0.123 Sum_probs=33.6
Q ss_pred hHHHHHHHHHhcCCh---HHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHh
Q 005881 447 SWNTMLVGYAQHGLG---REALEIYSMMQENKIKPN-DNTFIGVLSACVHIGLVEEGWHYFNSMIRD 509 (672)
Q Consensus 447 ~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 509 (672)
+...++.+|...+.. ++|.++++.+... -|+ ...+..-+..+.+.++.+.+.+.+.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 445556666655543 3455555555443 233 234444555555567777777777777643
No 356
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=77.34 E-value=80 Score=31.38 Aligned_cols=64 Identities=14% Similarity=0.165 Sum_probs=49.8
Q ss_pred CHHHHHHH---HHHHHhcCCHHHHHHHHHHHhcCCCC-CCchHHHHHHHHH-hcCChHHHHHHHHHHhh
Q 005881 547 NKVVWRCL---LSGCKTHKDLVLGRYAAEKILSTDPE-DTSAHIMLSNVYA-EANMWDETAKVRKIMKE 610 (672)
Q Consensus 547 ~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 610 (672)
|...|.++ +....+.|-+..|.+..+-++.++|. ||-.-...++.|+ +.++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44455554 34577889999999999999999998 8887778888876 67788877887776554
No 357
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=77.26 E-value=77 Score=31.14 Aligned_cols=131 Identities=11% Similarity=0.116 Sum_probs=85.8
Q ss_pred HHHHHHHhhccCChHHHHHHHHhCCCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-------Cc
Q 005881 519 IASVVHLFACRGQTRRAYEFIKSSPIEP--------NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPED-------TS 583 (672)
Q Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~p--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~ 583 (672)
-..|...+-.+|+..+|.+++.+.+++. -.....--++.|...+|+-.|..+.+++..-.-++ ..
T Consensus 134 Tk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlk 213 (439)
T KOG1498|consen 134 TKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLK 213 (439)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHH
Confidence 3456677788999999999998875331 01111223567889999999999988885432222 24
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCCceeEEEeCCEEEEEEeccccCCChHHHHHHHHHHH
Q 005881 584 AHIMLSNVYAEANMWDETAKVRKIMKEKSLKKDTGCSWTELQNKMHYFSTSRFAQFQGIDLHEVMNQLS 652 (672)
Q Consensus 584 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 652 (672)
.|..+.......+.+=++.+.++.+-+-+..+...--|+..-..+..|.. .-|...+..+.+.++.
T Consensus 214 yY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~---LAp~dneQsdll~~is 279 (439)
T KOG1498|consen 214 YYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCV---LAPHDNEQSDLLARIS 279 (439)
T ss_pred HHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEe---ecCCCcHHHHHHHHHh
Confidence 57788888889999999999999887766544433457655444444432 3455555555555443
No 358
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=77.07 E-value=16 Score=31.48 Aligned_cols=43 Identities=12% Similarity=0.167 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 005881 564 LVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKSL 613 (672)
Q Consensus 564 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 613 (672)
+++|...|+++...+|+|......| .+. .+|-++..++.+.+.
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksL-e~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSL-EMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHH-HHH------HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHH-HHH------HhhHHHHHHHHHHHh
Confidence 5677788888888888664433333 222 235555555554443
No 359
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=76.73 E-value=6 Score=39.47 Aligned_cols=84 Identities=11% Similarity=-0.007 Sum_probs=60.6
Q ss_pred hhccCChHHHHHHHHh-CCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHH
Q 005881 526 FACRGQTRRAYEFIKS-SPIEPNKVVWRCLL-SGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAK 603 (672)
Q Consensus 526 ~~~~g~~~~A~~~~~~-~~~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 603 (672)
+...+.++.|..++.+ +.++||-..|.+.- .++.+.+++..|+.=+.++++++|.....|+.-+.++.+.+++.+|..
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 3445556666666543 45567655554433 557778888888888888888888888888888888888888888888
Q ss_pred HHHHHh
Q 005881 604 VRKIMK 609 (672)
Q Consensus 604 ~~~~~~ 609 (672)
.++...
T Consensus 94 ~l~~~~ 99 (476)
T KOG0376|consen 94 DLEKVK 99 (476)
T ss_pred HHHHhh
Confidence 888654
No 360
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=76.44 E-value=1.3e+02 Score=33.26 Aligned_cols=184 Identities=15% Similarity=0.102 Sum_probs=98.6
Q ss_pred hcCCHHHHHHHHhhCC----CCCc-------hhHHHHHHH-HHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHH
Q 005881 426 KCGRLNDARKVFDHLS----SKNL-------VSWNTMLVG-YAQHGLGREALEIYSMMQEN----KIKPNDNTFIGVLSA 489 (672)
Q Consensus 426 ~~g~~~~A~~~~~~~~----~~~~-------~~~~~li~~-~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~ll~~ 489 (672)
...++++|..+..++. .|+. ..|+.+-.. ....|++++|.++.+..... -..+....+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 4567777777766554 2222 145555332 34567888888888777664 122333456667777
Q ss_pred hhccCcHHHHHHHHHHhHHhhCCCCchHHHH---HH--HHHhhccCChHHHHH--HHHh-----CCCCCC----HHHHHH
Q 005881 490 CVHIGLVEEGWHYFNSMIRDHGISPRMDHIA---SV--VHLFACRGQTRRAYE--FIKS-----SPIEPN----KVVWRC 553 (672)
Q Consensus 490 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~---~l--~~~~~~~g~~~~A~~--~~~~-----~~~~p~----~~~~~~ 553 (672)
..-.|++++|..+.....+. .-.-+..++. .+ ...+..+|+...|.. .+.. .+-+|- ......
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 507 AHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 77788888888877665422 1122333332 22 223455663333222 2221 122221 223333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCC----CCCCc---hHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 005881 554 LLSGCKTHKDLVLGRYAAEKILSTD----PEDTS---AHIMLSNVYAEANMWDETAKVRKIMKEKSL 613 (672)
Q Consensus 554 l~~~~~~~g~~~~a~~~~~~~~~~~----p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 613 (672)
++.++.+ ++.+..-..+.+++. |.... .+..|+.++...|+.++|...++.+..-..
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 3333332 555555555554432 32211 223788888899999999998888765433
No 361
>PF13934 ELYS: Nuclear pore complex assembly
Probab=76.06 E-value=59 Score=29.72 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=36.5
Q ss_pred HHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005881 486 VLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKTH 561 (672)
Q Consensus 486 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 561 (672)
++.++...|+.+.|..+++... ....+.+....+..+ ..++.+.||..+.+.....-....|..++..|...
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~ 185 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEE 185 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHH
Confidence 5555555667777777665432 111123333333333 45567777777666554221233555566555533
No 362
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=75.98 E-value=37 Score=26.88 Aligned_cols=61 Identities=10% Similarity=-0.021 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHh-------cCCCCCCchHH----HHHHHHHhcCChHHHHHHHHHH
Q 005881 548 KVVWRCLLSGCKTHKDLVLGRYAAEKIL-------STDPEDTSAHI----MLSNVYAEANMWDETAKVRKIM 608 (672)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~----~l~~~~~~~g~~~~a~~~~~~~ 608 (672)
..++..|..++...|++++++...++++ +++.+.-..|+ ..+.++...|+.++|.+.|+..
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3444555566666666666665555554 45554434443 4556678889999999988754
No 363
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=75.73 E-value=11 Score=33.99 Aligned_cols=82 Identities=12% Similarity=0.073 Sum_probs=36.3
Q ss_pred hhccCcHHHHHHHHHHhHHhhCCCCch-HHHHHHHHHhhccCChHHHHHH-HHhCCCCCCHHHHHHHHHH-HHhcCCHHH
Q 005881 490 CVHIGLVEEGWHYFNSMIRDHGISPRM-DHIASVVHLFACRGQTRRAYEF-IKSSPIEPNKVVWRCLLSG-CKTHKDLVL 566 (672)
Q Consensus 490 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~-~~~~g~~~~ 566 (672)
|.....++.|+..+.+.+ .+.|+. .-|..-+.++.+..+++.+.+- .+.+.+.||..--...+.. ......++.
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 444445555655554444 445544 2333344444444555444322 2233344444433222222 333444555
Q ss_pred HHHHHHHH
Q 005881 567 GRYAAEKI 574 (672)
Q Consensus 567 a~~~~~~~ 574 (672)
|+..++++
T Consensus 97 aI~~Lqra 104 (284)
T KOG4642|consen 97 AIKVLQRA 104 (284)
T ss_pred HHHHHHHH
Confidence 55555555
No 364
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=75.60 E-value=1e+02 Score=31.62 Aligned_cols=172 Identities=10% Similarity=0.077 Sum_probs=96.6
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 005881 413 NVVIGSALVDMYAKCGRLNDARKVFDHLS--SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSAC 490 (672)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 490 (672)
+....-+++..+.......-.+.+..+|. ..+-..|..++.+|..+ ..++-..+|+++.+. .-|.+.+..-+.-+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHHH
Confidence 44444556666666655655666665555 34445666777777777 456667777777773 44555444444444
Q ss_pred hccCcHHHHHHHHHHhHHhhCCCCc------hHHHHHHHHHhhccCChHHHHHHHHh----CCCCCCHHHHHHHHHHHHh
Q 005881 491 VHIGLVEEGWHYFNSMIRDHGISPR------MDHIASVVHLFACRGQTRRAYEFIKS----SPIEPNKVVWRCLLSGCKT 560 (672)
Q Consensus 491 ~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~----~~~~p~~~~~~~l~~~~~~ 560 (672)
...++.+.+..+|..+... +-|. .+.|..+.... ..+.+..+.+..+ .+...-...+..+-.-|..
T Consensus 142 yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4457777777777766532 2231 23455444432 2334444444332 3333334444555555666
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 005881 561 HKDLVLGRYAAEKILSTDPEDTSAHIMLSNV 591 (672)
Q Consensus 561 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 591 (672)
..++.+|+++...+++.+..|.-+...++.-
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~ 248 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIEN 248 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHH
Confidence 7777888888877777776655544444433
No 365
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=75.38 E-value=88 Score=30.89 Aligned_cols=64 Identities=8% Similarity=0.098 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC----CCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 547 NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDP----EDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 547 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
...+|..++..+++.|.++.|...+.++...++ ..+......+.++...|+.++|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455788889999999999999999999988653 2467777889999999999999999987776
No 366
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=74.65 E-value=6.7 Score=24.70 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=20.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 586 IMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 586 ~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
..|+.+|...|+.+.|.++++....
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4678889999999999999988764
No 367
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=74.62 E-value=77 Score=29.87 Aligned_cols=52 Identities=12% Similarity=0.217 Sum_probs=24.8
Q ss_pred CcHHHHHHHHHHhhcCCChhHHHHHHhcCC-----CCCcchHHHHHHHHHhcCChhH
Q 005881 210 FDKFVAMGLINLYAKCEKLDLASRVFSNIQ-----LPDLTAWSALIGGYAQLGKACE 261 (672)
Q Consensus 210 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~ 261 (672)
++..+....+..++..+++..-.++++... ..|...|..+|......|+..-
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~ 256 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEV 256 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHH
Confidence 344444444444444444444444444332 2344555555555555555543
No 368
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=74.42 E-value=6.3 Score=21.68 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=24.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 583 SAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
..+..++.+|...|++++|...++...+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4678899999999999999999987764
No 369
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.38 E-value=50 Score=30.08 Aligned_cols=53 Identities=13% Similarity=-0.016 Sum_probs=46.6
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 558 CKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 558 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
+...|++-++++....++...|.|..+|...+.+.+..=+.++|..-+....+
T Consensus 240 ~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 240 LLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 45678999999999999999999999999999999988888999988888765
No 370
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=74.01 E-value=37 Score=25.92 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=41.1
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 005881 423 MYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFI 484 (672)
Q Consensus 423 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 484 (672)
.+...|++++|..+.+....||...|-+|-. -+.|-.+++..-+.+|..+| .|...+|.
T Consensus 48 SLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 3556788888888888888888888866643 35566666777777777766 55555554
No 371
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.74 E-value=7.6 Score=28.01 Aligned_cols=47 Identities=9% Similarity=0.149 Sum_probs=24.3
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHhhccCChHHHHHH
Q 005881 492 HIGLVEEGWHYFNSMIRDHGISPR-MDHIASVVHLFACRGQTRRAYEF 538 (672)
Q Consensus 492 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 538 (672)
.....++|+..|+...++..-.|+ ..++.+++.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666555543322222 24555556666666666665554
No 372
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=73.51 E-value=82 Score=30.04 Aligned_cols=21 Identities=10% Similarity=0.045 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCCCCCCchHH
Q 005881 566 LGRYAAEKILSTDPEDTSAHI 586 (672)
Q Consensus 566 ~a~~~~~~~~~~~p~~~~~~~ 586 (672)
.|.++..++.+.+|.-|....
T Consensus 380 ~AvEAihRAvEFNPHVPkYLL 400 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKYLL 400 (556)
T ss_pred HHHHHHHHHhhcCCCCcHHHH
Confidence 466777888899996554433
No 373
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=73.34 E-value=14 Score=30.67 Aligned_cols=65 Identities=8% Similarity=0.075 Sum_probs=47.1
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChH
Q 005881 532 TRRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWD 599 (672)
Q Consensus 532 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 599 (672)
.+.|.++.+-++ ...............|++.-|.++.+.++..+|+|..+....+++|.+.|.-.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 356677777775 33444445556778999999999999999999999999999999888776543
No 374
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.30 E-value=77 Score=29.26 Aligned_cols=185 Identities=8% Similarity=0.082 Sum_probs=118.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChH---HHHHHHHHHcCcCchHHHHHHHHHHHh---cCC--CCcccHHHHHHHHHHhc
Q 005881 356 ASCHYGEAIELLKDMLFEGHCPNLY---TYSNILNISSDIPAIEWGKQTHCCIVK---PGF--DSNVVIGSALVDMYAKC 427 (672)
Q Consensus 356 ~~~~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~--~~~~~~~~~l~~~~~~~ 427 (672)
+...+++|+.-|.+..+..-.-... .+-.++....+.+++++....+.++.. +.+ .-+....|++++....+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 3457889999999887653232333 344557778899999998888877652 211 23456678888877777
Q ss_pred CCHHHHHHHHhhCC-----CCCchhH----HHHHHHHHhcCChHHHHHHHHHHHHCCC----CCCH-------HHHHHHH
Q 005881 428 GRLNDARKVFDHLS-----SKNLVSW----NTMLVGYAQHGLGREALEIYSMMQENKI----KPND-------NTFIGVL 487 (672)
Q Consensus 428 g~~~~A~~~~~~~~-----~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~-------~~~~~ll 487 (672)
.+.+--.++++.-. ..|...| +-|...|...|.+.+-.++++++...-- .-|. ..|..=+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 77777766665433 2333333 4566777778888888888888765311 1111 2466667
Q ss_pred HHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHH----HHHhhccCChHHHH-HHHH
Q 005881 488 SACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASV----VHLFACRGQTRRAY-EFIK 540 (672)
Q Consensus 488 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----~~~~~~~g~~~~A~-~~~~ 540 (672)
..|....+-.+-..+++....-...-|.+.....+ ..+..+.|++++|. ++|+
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFE 256 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFE 256 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHH
Confidence 77777777777778887766444445655544433 23456788898885 3444
No 375
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=73.13 E-value=5.8 Score=36.90 Aligned_cols=56 Identities=14% Similarity=0.230 Sum_probs=38.7
Q ss_pred hhccCcHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHhhccCChHHHHHHH-HhCCCCCCH
Q 005881 490 CVHIGLVEEGWHYFNSMIRDHGISPR-MDHIASVVHLFACRGQTRRAYEFI-KSSPIEPNK 548 (672)
Q Consensus 490 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~ 548 (672)
..+.|+.++|..+|+... .+.|+ ++...-+.......+++-+|-.++ +.+.+.|..
T Consensus 126 ~~~~Gk~ekA~~lfeHAl---alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~n 183 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHAL---ALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGN 183 (472)
T ss_pred HHhccchHHHHHHHHHHH---hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCc
Confidence 457899999999999877 56674 566666666666666677776665 445566643
No 376
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=72.98 E-value=58 Score=32.68 Aligned_cols=50 Identities=8% Similarity=0.052 Sum_probs=26.6
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHh--hccCcHHHHHHHHHHhH
Q 005881 457 QHGLGREALEIYSMMQENKIKPNDN--TFIGVLSAC--VHIGLVEEGWHYFNSMI 507 (672)
Q Consensus 457 ~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~--~~~g~~~~a~~~~~~~~ 507 (672)
..+++..|.++|+.+... ++++.. .+..+..+| ...-++++|.+.++...
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 456666666666666665 444443 233333433 23445666666666554
No 377
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=72.25 E-value=12 Score=38.41 Aligned_cols=101 Identities=11% Similarity=0.076 Sum_probs=72.6
Q ss_pred hhccCcHHHHHHHHHHhHHhhCCCCc--hHHHHHHHHHhhccCChHHHHHHHHh-CCC-CCCHHHHHHHHHHHHhcCCHH
Q 005881 490 CVHIGLVEEGWHYFNSMIRDHGISPR--MDHIASVVHLFACRGQTRRAYEFIKS-SPI-EPNKVVWRCLLSGCKTHKDLV 565 (672)
Q Consensus 490 ~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~-~p~~~~~~~l~~~~~~~g~~~ 565 (672)
+.-.|+...|...+.... ...|. ......|...+.+.|...+|-.++.+ +.+ -..+.++.++.+++....+++
T Consensus 617 wr~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred eeecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 445688888888877655 44553 23355677778888888888888754 322 234556777888888889999
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 005881 566 LGRYAAEKILSTDPEDTSAHIMLSNVYA 593 (672)
Q Consensus 566 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 593 (672)
.|++.++++++++|+++..-..|..+-+
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999998887766654433
No 378
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.97 E-value=9.1 Score=27.61 Aligned_cols=46 Identities=11% Similarity=-0.003 Sum_probs=35.3
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCchHH---HHHHHHHhcCChHHHHHHH
Q 005881 560 THKDLVLGRYAAEKILSTDPEDTSAHI---MLSNVYAEANMWDETAKVR 605 (672)
Q Consensus 560 ~~g~~~~a~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~a~~~~ 605 (672)
..++.+.|+..++++++..++.+.-+. .|..+|+..|++.++++.-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788999999999887776555444 6666788889888887764
No 379
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=70.87 E-value=34 Score=30.95 Aligned_cols=60 Identities=8% Similarity=-0.031 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCH-------HHHHHHHHHHhcCCC--C----CCchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 005881 552 RCLLSGCKTHKDL-------VLGRYAAEKILSTDP--E----DTSAHIMLSNVYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 552 ~~l~~~~~~~g~~-------~~a~~~~~~~~~~~p--~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 611 (672)
.-+...|+..|+. ..|...|+++++.+. . .......++.++.+.|++++|.+.|.++...
T Consensus 122 LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 122 LRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3344456666663 455666666664432 1 2356678999999999999999999988653
No 380
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=70.81 E-value=43 Score=25.24 Aligned_cols=62 Identities=13% Similarity=0.083 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC--CCchHHHHHHHHHhcCChH-HHHHHHHHH
Q 005881 547 NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPE--DTSAHIMLSNVYAEANMWD-ETAKVRKIM 608 (672)
Q Consensus 547 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~-~a~~~~~~~ 608 (672)
|......+...+...|+++.|...+-.+++.+|+ +..+-..+..++...|.-+ -+.+.++++
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4556677777888899999999998888888774 4666778888888888744 555555554
No 381
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=70.59 E-value=48 Score=34.26 Aligned_cols=24 Identities=17% Similarity=0.535 Sum_probs=19.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC
Q 005881 418 SALVDMYAKCGRLNDARKVFDHLS 441 (672)
Q Consensus 418 ~~l~~~~~~~g~~~~A~~~~~~~~ 441 (672)
..++.-|.+.+++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 356777888899999999888887
No 382
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=69.96 E-value=14 Score=28.03 Aligned_cols=53 Identities=9% Similarity=0.041 Sum_probs=38.4
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCC---------CchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 558 CKTHKDLVLGRYAAEKILSTDPED---------TSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 558 ~~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
+.+.||+..|...+.+.+...... ..+...++.++...|++++|.+.+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456788888877777776533211 23445788889999999999999987754
No 383
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.59 E-value=1.6e+02 Score=31.43 Aligned_cols=146 Identities=11% Similarity=0.053 Sum_probs=71.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHh---hc----cCCh
Q 005881 460 LGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLF---AC----RGQT 532 (672)
Q Consensus 460 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~---~~----~g~~ 532 (672)
+...|..++.+.-+.| .|-..--...+..+.. +.++.+...+..+. ..+.+--...-..+.+.. .. ..+.
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a-~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~ 455 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLA-ELGYEVAQSNAAYLLDQSEEDLFSRGVISTL 455 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHH-HhhhhHHhhHHHHHHHhccccccccccccch
Confidence 5667777777777766 3333222233333333 55554444443332 112111110000111110 11 2244
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhc---CChHHHHHHH
Q 005881 533 RRAYEFIKSSPIEPNKVVWRCLLSGCKT----HKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEA---NMWDETAKVR 605 (672)
Q Consensus 533 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~~~ 605 (672)
+.+...+.+....-+......+...+.. ..+++.|...|.++-+.. +.....++.++..- ..+..|.+.+
T Consensus 456 ~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~ 532 (552)
T KOG1550|consen 456 ERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYY 532 (552)
T ss_pred hHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHH
Confidence 5555555554433344444444444322 235777777777776655 66677777776642 1267788888
Q ss_pred HHHhhC
Q 005881 606 KIMKEK 611 (672)
Q Consensus 606 ~~~~~~ 611 (672)
++..+.
T Consensus 533 ~~~~~~ 538 (552)
T KOG1550|consen 533 DQASEE 538 (552)
T ss_pred HHHHhc
Confidence 776653
No 384
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=69.40 E-value=30 Score=28.16 Aligned_cols=20 Identities=0% Similarity=0.024 Sum_probs=10.1
Q ss_pred HHHHhhccCChHHHHHHHHh
Q 005881 522 VVHLFACRGQTRRAYEFIKS 541 (672)
Q Consensus 522 l~~~~~~~g~~~~A~~~~~~ 541 (672)
|.-++.|.+++++++.+++.
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ 96 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDA 96 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHH
Confidence 44444555555555555443
No 385
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=68.81 E-value=1.8e+02 Score=31.62 Aligned_cols=45 Identities=4% Similarity=-0.079 Sum_probs=24.5
Q ss_pred HccCChHHHHHHHhhCCC-----CC-----cccHHHHHH--HHHhcCChhHHHHHHH
Q 005881 324 SKCELLEESLKTFDEMDE-----HD-----VVSWNALIA--GHLASCHYGEAIELLK 368 (672)
Q Consensus 324 ~~~~~~~~a~~~~~~~~~-----~~-----~~~~~~li~--~~~~~~~~~~A~~~~~ 368 (672)
+-.+++..|...+..+.+ |+ ...+..++. .+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345667667776666543 11 112222232 2334578888888886
No 386
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=68.46 E-value=12 Score=33.47 Aligned_cols=55 Identities=16% Similarity=0.090 Sum_probs=37.6
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 005881 559 KTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKSL 613 (672)
Q Consensus 559 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 613 (672)
...+|.+.+-+++.+++++-|+....|..++....+.|+.+.|.+.+++..+.+.
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 3456667777777777777777777777777777777777777777776665443
No 387
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=67.69 E-value=1.2e+02 Score=32.66 Aligned_cols=183 Identities=19% Similarity=0.229 Sum_probs=94.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh----------HHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccH
Q 005881 347 WNALIAGHLASCHYGEAIELLKDMLFEGHCPNL----------YTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVI 416 (672)
Q Consensus 347 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 416 (672)
-..++-.|....+++..+++.+.+.+. ||. +.|...++---+.|+-++|....--+.+..-+..+
T Consensus 204 V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap-- 278 (1226)
T KOG4279|consen 204 VSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP-- 278 (1226)
T ss_pred HHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC--
Confidence 344555666667777777777776643 322 12333444444455555555554444433211111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHhhcc
Q 005881 417 GSALVDMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNT---FIGVLSACVHI 493 (672)
Q Consensus 417 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~ 493 (672)
++||-+|++ |+.|. +-+.|...+..+.|.+.|++.-+ +.|+..+ +..|+.+-.+
T Consensus 279 -----Dm~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~- 335 (1226)
T KOG4279|consen 279 -----DMYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE- 335 (1226)
T ss_pred -----ceeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh-
Confidence 123444432 22211 11233444556677777777766 5676643 3344433221
Q ss_pred CcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005881 494 GLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEK 573 (672)
Q Consensus 494 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 573 (672)
.++.-.++- ..-..|-..+++.|.++.-.++++-. ..+.+-.-.+|+.+|.++.+.
T Consensus 336 -~Fens~Elq-------------~IgmkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqAae~ 391 (1226)
T KOG4279|consen 336 -HFENSLELQ-------------QIGMKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQAAEM 391 (1226)
T ss_pred -hccchHHHH-------------HHHHHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHH
Confidence 111111110 01112445677888877776666521 234455567899999999999
Q ss_pred HhcCCCCC
Q 005881 574 ILSTDPED 581 (672)
Q Consensus 574 ~~~~~p~~ 581 (672)
+.++.|..
T Consensus 392 mfKLk~P~ 399 (1226)
T KOG4279|consen 392 MFKLKPPV 399 (1226)
T ss_pred HhccCCce
Confidence 99998854
No 388
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.49 E-value=2e+02 Score=32.34 Aligned_cols=58 Identities=10% Similarity=0.037 Sum_probs=40.2
Q ss_pred hhHHHHHHhcCCChhHHHHHhccCCCCCcch-----HHHHHH---HHHcCCCchhHHHHHHHhHhC
Q 005881 13 YNHLLLMYVKFSRINDAQKLFDEMPERNVIS-----WSALIS---GFSQIGMPEVALNYFRLMVCC 70 (672)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~li~---~~~~~g~~~~a~~~~~~m~~~ 70 (672)
+..-+..+....++++|..+-+....|++.. +..... -+..+|++++|++.|.++...
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~d 375 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEID 375 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccC
Confidence 5666777777888999988887777655443 222222 245688999999999887543
No 389
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=66.82 E-value=51 Score=27.44 Aligned_cols=78 Identities=12% Similarity=0.139 Sum_probs=54.4
Q ss_pred hhhHHHHHHhcCCChhHHHHHhccCCC---------CCcchHHHHHHHHHcCCC-chhHHHHHHHhHhCCCCCCcccHHH
Q 005881 12 TYNHLLLMYVKFSRINDAQKLFDEMPE---------RNVISWSALISGFSQIGM-PEVALNYFRLMVCCVLEPNYYTYVG 81 (672)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~ 81 (672)
..|+++.-....++......+++.+.. .+-.+|.+++.+.+.... --.+..+|..|++.+.++++.-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 356777776767777777777666542 455677888888866655 3456777777877777888888888
Q ss_pred HHHHHhcC
Q 005881 82 AVSACASR 89 (672)
Q Consensus 82 ll~~~~~~ 89 (672)
++.+|.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 88887664
No 390
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=66.54 E-value=14 Score=23.26 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=15.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC
Q 005881 451 MLVGYAQHGLGREALEIYSMMQEN 474 (672)
Q Consensus 451 li~~~~~~g~~~~A~~~~~~m~~~ 474 (672)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666666654
No 391
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=66.27 E-value=38 Score=26.57 Aligned_cols=55 Identities=15% Similarity=0.156 Sum_probs=33.6
Q ss_pred hHHHHHHhcCCChhHHHHHhccCCC----------CCcchHHHHHHHHHcCCCchhHHHHHHHhHh
Q 005881 14 NHLLLMYVKFSRINDAQKLFDEMPE----------RNVISWSALISGFSQIGMPEVALNYFRLMVC 69 (672)
Q Consensus 14 ~~ll~~~~~~g~~~~a~~~~~~~~~----------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 69 (672)
++|+++|... +......++..-.. ....-|..|+..|...|..++|++++.++..
T Consensus 3 TaLlk~Yl~~-~~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 3 TALLKCYLET-NPSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHh-CHHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4566666666 54444444432111 1222477788888888888888888887765
No 392
>PRK10941 hypothetical protein; Provisional
Probab=65.04 E-value=44 Score=31.44 Aligned_cols=66 Identities=11% Similarity=-0.022 Sum_probs=41.5
Q ss_pred HHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHH
Q 005881 521 SVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHI 586 (672)
Q Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 586 (672)
.+-.+|.+.++++.|+...+.+ .+.| ++.-|..-.-.|.+.|....|..-++.-++..|+++.+-.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 3445566666666666666553 2344 3445555555677777777777777777777776665443
No 393
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=64.85 E-value=20 Score=21.37 Aligned_cols=29 Identities=7% Similarity=-0.209 Sum_probs=15.1
Q ss_pred HHHHHHHHHhcCCHHHHHHH--HHHHhcCCC
Q 005881 551 WRCLLSGCKTHKDLVLGRYA--AEKILSTDP 579 (672)
Q Consensus 551 ~~~l~~~~~~~g~~~~a~~~--~~~~~~~~p 579 (672)
|-.+...+..+|++++|+.+ ++-+..++|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 33444555666666666666 335555544
No 394
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=64.70 E-value=1.7e+02 Score=29.96 Aligned_cols=241 Identities=9% Similarity=-0.053 Sum_probs=125.7
Q ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHcCcC------chHHHHHHHHHHHhc-CCCC-cccHHHHHHHHHHhcCCH-HH
Q 005881 362 EAIELLKDMLFEGHCPNLYTYSNILNISSDIP------AIEWGKQTHCCIVKP-GFDS-NVVIGSALVDMYAKCGRL-ND 432 (672)
Q Consensus 362 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~------~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~-~~ 432 (672)
....+|++..+. .|+...+...|..|...- .+.....+++...+. +..+ ....|..+.-+++..... .-
T Consensus 300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 334566665543 455555655665554322 233344444444433 2222 334455555555554443 33
Q ss_pred HHHHHhhCCCCCchhHHHHHHHHHhcC-ChHHH-HHHHHHHHHCCCCCCHHHHHHHHH-HhhccCcHHHHHHHHHHhHHh
Q 005881 433 ARKVFDHLSSKNLVSWNTMLVGYAQHG-LGREA-LEIYSMMQENKIKPNDNTFIGVLS-ACVHIGLVEEGWHYFNSMIRD 509 (672)
Q Consensus 433 A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A-~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~ 509 (672)
|..+..+....+...|..-+....... +++-- .++|......=..+-...+.+... ........+.....+..+
T Consensus 378 a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~--- 454 (568)
T KOG2396|consen 378 AVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSV--- 454 (568)
T ss_pred HHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHh---
Confidence 444444555667766665555544321 22211 222333333211222223333320 001111111222222222
Q ss_pred hCCCCch-HHHHHHHHHhhccCChHHHHHHHHhCCC--CCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHhcCCCCCCch
Q 005881 510 HGISPRM-DHIASVVHLFACRGQTRRAYEFIKSSPI--EPNKVVWRCLLSG--CKTHKDLVLGRYAAEKILSTDPEDTSA 584 (672)
Q Consensus 510 ~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~ 584 (672)
..|+. ..-+.+.+-+.+.|-.++|...++++.. .|+...+..++.. -...-+...+...|+.++.-...++..
T Consensus 455 --~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 455 --IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDL 532 (568)
T ss_pred --cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHH
Confidence 23333 4455677888889999999999887532 3466667666654 222334788888999887655478888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHh
Q 005881 585 HIMLSNVYAEANMWDETAKVRKIMK 609 (672)
Q Consensus 585 ~~~l~~~~~~~g~~~~a~~~~~~~~ 609 (672)
|......-...|..+.+-.++-+..
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHH
Confidence 8887777778888888888766543
No 395
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=64.49 E-value=1.3e+02 Score=28.34 Aligned_cols=112 Identities=16% Similarity=-0.028 Sum_probs=52.4
Q ss_pred hcCChHHHHHHhhccCCCCcccHHHHHHHHHhcCChHHHHHHH----HHHHhCCCCCChhhHHHHHHHHhccCChH-HHH
Q 005881 123 KCGLLSSAQFVFDASLERNSISWVSLLSSYCQCGEHVHGLKIF----LLSRKSGVAISEFSCASVLGACAVLGNLK-VGM 197 (672)
Q Consensus 123 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~ 197 (672)
+.+++++|.+++... ...+.+.|+...|-++- +...+.++.++......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 345666666665431 23344555554444433 33334466666655555555544333211 122
Q ss_pred HHHHHHHH---hc--CCCcHHHHHHHHHHhhcCCChhHHHHHHhcCCCCCcch
Q 005881 198 QIHSLVFK---CA--LEFDKFVAMGLINLYAKCEKLDLASRVFSNIQLPDLTA 245 (672)
Q Consensus 198 ~~~~~~~~---~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 245 (672)
.+.+.+++ .| ..-++.....+...|.+.|++.+|+.-|-.-..++...
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~ 123 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFA 123 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHH
Confidence 23333322 22 22356677778888888888888887775544333333
No 396
>PRK11619 lytic murein transglycosylase; Provisional
Probab=64.45 E-value=2.2e+02 Score=31.07 Aligned_cols=80 Identities=11% Similarity=-0.177 Sum_probs=46.0
Q ss_pred HHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC---CCCCchHHHHHHHHHhcCChH
Q 005881 523 VHLFACRGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTD---PEDTSAHIMLSNVYAEANMWD 599 (672)
Q Consensus 523 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~ 599 (672)
+..+...|...+|...+..+....+......+.......|..+.+.....+....+ -..|..|......+.+.-..+
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence 44556678888887777654333455555556666677888888877765442211 012334555555555544555
Q ss_pred HHH
Q 005881 600 ETA 602 (672)
Q Consensus 600 ~a~ 602 (672)
.+.
T Consensus 494 ~~l 496 (644)
T PRK11619 494 QSY 496 (644)
T ss_pred HHH
Confidence 544
No 397
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=63.51 E-value=56 Score=26.53 Aligned_cols=42 Identities=5% Similarity=-0.038 Sum_probs=32.8
Q ss_pred HHHHHHHHHhc--CCCCCCchHHHHHHHHHhcCChHHHHHHHHH
Q 005881 566 LGRYAAEKILS--TDPEDTSAHIMLSNVYAEANMWDETAKVRKI 607 (672)
Q Consensus 566 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 607 (672)
.+..+|+.+.. ++-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77777777754 5566778888999999999999999998875
No 398
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=61.60 E-value=1.3e+02 Score=27.66 Aligned_cols=162 Identities=14% Similarity=0.099 Sum_probs=78.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh-ccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhc-
Q 005881 451 MLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACV-HIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFAC- 528 (672)
Q Consensus 451 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 528 (672)
++..+-+.|+++++.+.++++...+...+..--+.+-.+|- ..|....+++.+..+..+..-..+ .....++.-|..
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 45566677888888888888888765555543333333332 223444556555555433222211 222222222211
Q ss_pred -----cCChHHHHHHHHhC--C--CCCCHHHHHHHHHH-H----Hh--cC-----CHHHHHHHHHHHhc-----CCCCCC
Q 005881 529 -----RGQTRRAYEFIKSS--P--IEPNKVVWRCLLSG-C----KT--HK-----DLVLGRYAAEKILS-----TDPEDT 582 (672)
Q Consensus 529 -----~g~~~~A~~~~~~~--~--~~p~~~~~~~l~~~-~----~~--~g-----~~~~a~~~~~~~~~-----~~p~~~ 582 (672)
..--.+.+.+++.. | ..+...++-.-+.| | .. .| -.+.|...|+++.+ +.|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 01123344444442 1 11222222111111 1 11 11 24778888888754 677666
Q ss_pred chHHHH---H-HHHHhcCChHHHHHHHHHHhhCCC
Q 005881 583 SAHIML---S-NVYAEANMWDETAKVRKIMKEKSL 613 (672)
Q Consensus 583 ~~~~~l---~-~~~~~~g~~~~a~~~~~~~~~~~~ 613 (672)
...... + ..|.-.|+.++|.++.+..-+..+
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 543322 2 235679999999999887765443
No 399
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=60.71 E-value=1.5e+02 Score=28.00 Aligned_cols=61 Identities=11% Similarity=0.131 Sum_probs=42.6
Q ss_pred CCCCchHHHHHHHHHHHccCChHHHHHHHhhCCC-----CCcccHHHHHHHHHhcCChhHHHHHHH
Q 005881 308 GFSSFTFVANTVLDFYSKCELLEESLKTFDEMDE-----HDVVSWNALIAGHLASCHYGEAIELLK 368 (672)
Q Consensus 308 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~ 368 (672)
+-.++..+....+..+++.+++.+-.++++.... .|...|..+|......|+..-..++.+
T Consensus 197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 3456666667777777777888777777776543 477788888888888888665444443
No 400
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=59.70 E-value=42 Score=29.81 Aligned_cols=35 Identities=14% Similarity=0.046 Sum_probs=17.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 005881 545 EPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDP 579 (672)
Q Consensus 545 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 579 (672)
.|++..+..++.++...|+.++|.+..+++..+-|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34444555555555555555555555555555555
No 401
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=58.89 E-value=85 Score=24.45 Aligned_cols=62 Identities=19% Similarity=0.121 Sum_probs=37.3
Q ss_pred HHHHHHHccCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHH
Q 005881 318 TVLDFYSKCELLEESLKTFDEMDEHDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTY 382 (672)
Q Consensus 318 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~ 382 (672)
.-+..+...|++++|...=.....||...|-+|-. .+.|-.+++...+.++..+| .|....|
T Consensus 45 Ir~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g-~~~~q~F 106 (116)
T PF09477_consen 45 IRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASSG-SPELQAF 106 (116)
T ss_dssp HHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S-SHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 34455677888888854444445588888866654 47788888888888776665 3433333
No 402
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=58.39 E-value=1.1e+02 Score=29.40 Aligned_cols=119 Identities=8% Similarity=0.035 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc------cCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHH
Q 005881 461 GREALEIYSMMQENKIKPNDNTFIGVLSACVH------IGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRR 534 (672)
Q Consensus 461 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 534 (672)
.+++..++++....+ .|-.......|.+|-. .-+|.....+|+.+. .+.|++.+--.-.-++....-.+.
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~---~~apSPvV~LNRAVAla~~~Gp~a 347 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE---QAAPSPVVTLNRAVALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH---HhCCCCeEeehHHHHHHHhhhHHh
Confidence 467777888877776 4777777666665522 235667777777665 334544222222233344444566
Q ss_pred HHHHHHhCCCCCC---HHHHHHH-HHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 005881 535 AYEFIKSSPIEPN---KVVWRCL-LSGCKTHKDLVLGRYAAEKILSTDPEDTS 583 (672)
Q Consensus 535 A~~~~~~~~~~p~---~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 583 (672)
++..++.++-+|. ...|.++ ...+.+.|..++|...|++++.+.++...
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 6777766654442 2233333 34477889999999999999998886544
No 403
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=58.23 E-value=71 Score=23.78 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=27.3
Q ss_pred hcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHH
Q 005881 426 KCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREAL 465 (672)
Q Consensus 426 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 465 (672)
..|+.+.|++++..+. ..+..|..++.++...|..+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4577777777777777 66677777777777777655543
No 404
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=57.06 E-value=62 Score=25.41 Aligned_cols=28 Identities=21% Similarity=0.151 Sum_probs=24.6
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005881 345 VSWNALIAGHLASCHYGEAIELLKDMLF 372 (672)
Q Consensus 345 ~~~~~li~~~~~~~~~~~A~~~~~~m~~ 372 (672)
.-|..|+.-|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4588899999999999999999998877
No 405
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.05 E-value=14 Score=40.00 Aligned_cols=48 Identities=17% Similarity=0.126 Sum_probs=35.0
Q ss_pred hhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 005881 526 FACRGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILS 576 (672)
Q Consensus 526 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 576 (672)
...+|+++.|++.-+++. +..+|..|......+|+.+-|+..|++...
T Consensus 653 aLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred ehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 346777777777777765 667777777777777888888777776543
No 406
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=55.45 E-value=87 Score=30.08 Aligned_cols=91 Identities=12% Similarity=0.015 Sum_probs=68.5
Q ss_pred HHHHHHHHhhccCChHHHHHHHHh-C---CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 005881 518 HIASVVHLFACRGQTRRAYEFIKS-S---PIEP--NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNV 591 (672)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~-~---~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 591 (672)
+|.-=+.-|.+..++..|.+.|.+ + .-.| +...|+.-..+-.-.|++..++.-..+++.++|.+..+|..=+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 333345667788888999888854 2 1234 455676666666677999999999999999999999999988888
Q ss_pred HHhcCChHHHHHHHHHH
Q 005881 592 YAEANMWDETAKVRKIM 608 (672)
Q Consensus 592 ~~~~g~~~~a~~~~~~~ 608 (672)
+....++.+|....+..
T Consensus 163 ~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 88888877776665544
No 407
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.42 E-value=3.5e+02 Score=30.51 Aligned_cols=128 Identities=14% Similarity=0.013 Sum_probs=67.2
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhcCCChhhHHHHHHHHHHhCCC--CChhHHHHHHHHH
Q 005881 44 WSALISGFSQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSACASRGDARSGKEIHGRMYRSGLE--LNSHVSNCLINMY 121 (672)
Q Consensus 44 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~ 121 (672)
|..|+..|...|+.++|+++|.+..... . +... ...+.-..+.+-+.+.+-+ +-...|...+
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~-~-~~d~-----------~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wv--- 570 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDED-S-DTDS-----------FQLDGLEKIIEYLKKLGAENLDLILEYADWV--- 570 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccc-c-cccc-----------chhhhHHHHHHHHHHhcccchhHHHHHhhhh---
Confidence 8899999999999999999999987631 1 1110 0011111233333333322 1111111111
Q ss_pred HhcCChHHHHHHhhccCCCCcccHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 005881 122 GKCGLLSSAQFVFDASLERNSISWV-SLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCASVLGACA 188 (672)
Q Consensus 122 ~~~g~~~~a~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 188 (672)
-..+.+...++|-.-......+.+ .-+-.|......+-+...++.+....-.++..-.+.++..|+
T Consensus 571 -l~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 571 -LNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred -hccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 123445555555441111111111 123445566677778888888877766666666666666654
No 408
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=54.97 E-value=73 Score=26.68 Aligned_cols=64 Identities=9% Similarity=0.072 Sum_probs=45.2
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 005881 62 NYFRLMVCCVLEPNYYTYVGAVSACASRGDARSGKEIHGRMYRSGLELNSHVSNCLINMYGKCGL 126 (672)
Q Consensus 62 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 126 (672)
++.+.+++.|++++.. -..++..+...++.-.|..+++.+.+.++..+..|--.-++.+...|-
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3455667777776665 456777777777778899999999998877766655555666666653
No 409
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=54.61 E-value=62 Score=30.37 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=33.8
Q ss_pred HHHHHcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhcCCChhhHHHHHHHHH
Q 005881 48 ISGFSQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSACASRGDARSGKEIHGRMY 103 (672)
Q Consensus 48 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 103 (672)
-+.|..+|.+.+|.++-+.....+ +.+...+-.+++.++..|+--.+.+-++.+.
T Consensus 286 a~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 356666777777777766666543 4455566666666766666555555555443
No 410
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.19 E-value=2.8e+02 Score=29.08 Aligned_cols=51 Identities=18% Similarity=0.148 Sum_probs=32.1
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCC-CCchHHHHHHHHH-hcCChHHHHHHHHHH
Q 005881 558 CKTHKDLVLGRYAAEKILSTDPE-DTSAHIMLSNVYA-EANMWDETAKVRKIM 608 (672)
Q Consensus 558 ~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~~ 608 (672)
..+.|-+..|.+..+-++.++|. ||-....+++.|+ +..+++=-+++++..
T Consensus 352 l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 352 LAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45566677777777777777775 6666666666655 455555555555554
No 411
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=53.98 E-value=67 Score=25.80 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=32.3
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 005881 541 SSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDP 579 (672)
Q Consensus 541 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 579 (672)
.+.+.|++......+.+|++.+|+..|..+++-+-..-+
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g 115 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG 115 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc
Confidence 456789999999999999999999999999987754333
No 412
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=53.17 E-value=14 Score=33.39 Aligned_cols=85 Identities=16% Similarity=0.103 Sum_probs=69.3
Q ss_pred hhccCChHHHHHHH-HhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHH
Q 005881 526 FACRGQTRRAYEFI-KSSPIEPNKVVWRC-LLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAK 603 (672)
Q Consensus 526 ~~~~g~~~~A~~~~-~~~~~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 603 (672)
|....++..|...+ +.+.+.|...+|.+ =+-.+.+..+++.+.+-..+++++.|+....+..++..+.....+++|..
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHH
Confidence 44556778887766 45678898866544 44445678999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 005881 604 VRKIMKE 610 (672)
Q Consensus 604 ~~~~~~~ 610 (672)
.+.+...
T Consensus 100 ~Lqra~s 106 (284)
T KOG4642|consen 100 VLQRAYS 106 (284)
T ss_pred HHHHHHH
Confidence 9998743
No 413
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=53.13 E-value=1.5e+02 Score=27.91 Aligned_cols=17 Identities=18% Similarity=0.135 Sum_probs=9.4
Q ss_pred HHHHHhcCCCCCCchHH
Q 005881 570 AAEKILSTDPEDTSAHI 586 (672)
Q Consensus 570 ~~~~~~~~~p~~~~~~~ 586 (672)
++--.++++|..|+.+-
T Consensus 266 LyLLv~R~DPA~Pss~p 282 (309)
T PF07163_consen 266 LYLLVVRLDPASPSSLP 282 (309)
T ss_pred HHHHheeecCCCCCcch
Confidence 34445567776665544
No 414
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=52.86 E-value=26 Score=31.51 Aligned_cols=55 Identities=25% Similarity=0.288 Sum_probs=34.0
Q ss_pred hccCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 005881 527 ACRGQTRRAYEFIKS-SPIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPED 581 (672)
Q Consensus 527 ~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 581 (672)
...++.+.|.+++.+ +...| ....|.-+...-.+.|+.+.|-+.|++.++++|.+
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345555555555544 33444 33456666666667777777777777777777754
No 415
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=52.28 E-value=99 Score=24.91 Aligned_cols=60 Identities=10% Similarity=0.140 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 005881 463 EALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVH 524 (672)
Q Consensus 463 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 524 (672)
+..+-++....-.+-|++......+++|.+.+++..|.++|+.+..+ ..+....|..+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH
Confidence 34455566666678899999999999999999999999999887643 3333344555443
No 416
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=52.07 E-value=69 Score=33.28 Aligned_cols=134 Identities=13% Similarity=0.055 Sum_probs=88.5
Q ss_pred CCCHHHHHHHHHHhhcc--CcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhc-cCChHHHHHHHHh-CCCCC--CHHH
Q 005881 477 KPNDNTFIGVLSACVHI--GLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFAC-RGQTRRAYEFIKS-SPIEP--NKVV 550 (672)
Q Consensus 477 ~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~-~~~~p--~~~~ 550 (672)
-|+..+...++.-...- ...+-|..++..|. ..+.|---..+ +...|-| .|+...|.+.+.. ...+| ..+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~--~~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAIN--KPNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhc--CCCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 46666655554433321 22344555555553 12333222222 3344544 7899999988765 33445 2234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 005881 551 WRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKSL 613 (672)
Q Consensus 551 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 613 (672)
.-.|.....+.|-.-+|...+.+.+.+....|-++..++++|....+.+.|.+.++...+...
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 445666677778888999999999999888889999999999999999999999998765433
No 417
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=51.91 E-value=2.6e+02 Score=27.90 Aligned_cols=53 Identities=9% Similarity=0.154 Sum_probs=33.6
Q ss_pred HHHHhhccCcHHHHHHHHHHhHHhhCCCCc--hHHHHHHHHHh-hccCChHHHHHHHHh
Q 005881 486 VLSACVHIGLVEEGWHYFNSMIRDHGISPR--MDHIASVVHLF-ACRGQTRRAYEFIKS 541 (672)
Q Consensus 486 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~-~~~g~~~~A~~~~~~ 541 (672)
.+..+.+.|-+..|.++.+-+. .+.|+ +-....+|+.| .++++++--+++.+.
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~ 164 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSES 164 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHh
Confidence 3456677788888888877666 45553 44444556655 456777666666654
No 418
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=51.81 E-value=1.9e+02 Score=26.39 Aligned_cols=47 Identities=21% Similarity=0.174 Sum_probs=32.2
Q ss_pred HHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 005881 434 RKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDN 481 (672)
Q Consensus 434 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 481 (672)
..+|+-..+|.+.....++..|. .+++++|.+++.++.+.|+.|...
T Consensus 228 enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 228 ENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred hhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH
Confidence 33444444566666666666544 456888888888888888887664
No 419
>PHA03100 ankyrin repeat protein; Provisional
Probab=51.75 E-value=3e+02 Score=28.67 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=9.5
Q ss_pred hcCChHHHHHHhhccC
Q 005881 123 KCGLLSSAQFVFDASL 138 (672)
Q Consensus 123 ~~g~~~~a~~~~~~~~ 138 (672)
..|+.+-+..+++...
T Consensus 117 ~~~~~~iv~~Ll~~g~ 132 (480)
T PHA03100 117 KSNSYSIVEYLLDNGA 132 (480)
T ss_pred ccChHHHHHHHHHcCC
Confidence 5666666666665443
No 420
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=50.63 E-value=1.3e+02 Score=28.31 Aligned_cols=87 Identities=7% Similarity=-0.049 Sum_probs=43.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhh-----
Q 005881 149 LSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCASVLGACAVLGNLKVGMQIHSLVFKCALEFDKFVAMGLINLYA----- 223 (672)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----- 223 (672)
|.+++..++|.+++...-+--+.--+.-....-.-|-.|++.+.+..+.++-...++..-.-+..-|.+++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 667777777777766543333221112222333334445666777666666665554422222223444444443
Q ss_pred cCCChhHHHHHH
Q 005881 224 KCEKLDLASRVF 235 (672)
Q Consensus 224 ~~g~~~~a~~~~ 235 (672)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 335555655554
No 421
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=50.62 E-value=47 Score=30.94 Aligned_cols=57 Identities=19% Similarity=0.176 Sum_probs=48.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 554 LLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 554 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
+-.++.+.++.+.|....++.+.++|+++.-..-.+-+|.+.|...-|.+-++...+
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 334577888999999999999999999998888899999999999999888887544
No 422
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=49.72 E-value=2.3e+02 Score=26.67 Aligned_cols=158 Identities=15% Similarity=0.043 Sum_probs=75.0
Q ss_pred cCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCchhHHHHHHH----hHhCCCCCCcccHHHHHHHHhcCCC-----h
Q 005881 22 KFSRINDAQKLFDEMPERNVISWSALISGFSQIGMPEVALNYFRL----MVCCVLEPNYYTYVGAVSACASRGD-----A 92 (672)
Q Consensus 22 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~~~~p~~~~~~~ll~~~~~~~~-----~ 92 (672)
+++++++|.+++.. =...+.+.|+...|.++-.. ..+.++++|......++..+...+. .
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 45667777776532 22344555555554443333 2334556666555555555443321 1
Q ss_pred hhHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCChHHHHHHhhccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005881 93 RSGKEIHGRMYRSG--LELNSHVSNCLINMYGKCGLLSSAQFVFDASLERNSISWVSLLSSYCQCGEHVHGLKIFLLSRK 170 (672)
Q Consensus 93 ~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (672)
+-..+...+- +.| ...++..+..+...|.+.|++.+|+..|-....++...+..++......|...++
T Consensus 71 ~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------- 140 (260)
T PF04190_consen 71 KFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------- 140 (260)
T ss_dssp HHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H---------
T ss_pred HHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch---------
Confidence 1222333333 332 2347889999999999999999999888654433333332233333333333222
Q ss_pred CCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHh
Q 005881 171 SGVAISEFSCASVLGACAVLGNLKVGMQIHSLVFKC 206 (672)
Q Consensus 171 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 206 (672)
|...-..++ .+...+++..|...+....+.
T Consensus 141 -----dlfi~RaVL-~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 -----DLFIARAVL-QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp -----HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 111111222 234456677777766665543
No 423
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=49.23 E-value=53 Score=21.15 Aligned_cols=32 Identities=16% Similarity=0.341 Sum_probs=19.6
Q ss_pred cCCChhhHHHHHHHHHHhCCCCChhHHHHHHH
Q 005881 88 SRGDARSGKEIHGRMYRSGLELNSHVSNCLIN 119 (672)
Q Consensus 88 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 119 (672)
+.|-..++..+++.|.+.|+..+...+..++.
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 45555566666666666666666666555543
No 424
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=49.23 E-value=4.7e+02 Score=30.15 Aligned_cols=159 Identities=9% Similarity=-0.075 Sum_probs=70.2
Q ss_pred HHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHH-HHHHHHHhHHhhCCCC
Q 005881 436 VFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEE-GWHYFNSMIRDHGISP 514 (672)
Q Consensus 436 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~~~~p 514 (672)
+...+..+|...-...+.++.+.+..+. +..... .++...-.....++...+..+. +...+..+.. .+
T Consensus 719 l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~----D~ 787 (897)
T PRK13800 719 FAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGGAPAGDAVRALTG----DP 787 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccccchhHHHHHHHhc----CC
Confidence 3344445555444444555554443321 112221 3444444444445554443322 2233333321 34
Q ss_pred chHHHHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHh
Q 005881 515 RMDHIASVVHLFACRGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAE 594 (672)
Q Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 594 (672)
+...-...+.++...|..+.+...+...-..++..+-...+.++...+. +++...+..+++ +| +...-...+.++.+
T Consensus 788 d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~-D~-~~~VR~~A~~aL~~ 864 (897)
T PRK13800 788 DPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT-DP-HLDVRKAAVLALTR 864 (897)
T ss_pred CHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc-CC-CHHHHHHHHHHHhc
Confidence 5566666666666666654443333222224555555555555555554 234444444442 22 33444444455544
Q ss_pred cCChHHHHHHHHHH
Q 005881 595 ANMWDETAKVRKIM 608 (672)
Q Consensus 595 ~g~~~~a~~~~~~~ 608 (672)
.+.-.++...+...
T Consensus 865 ~~~~~~a~~~L~~a 878 (897)
T PRK13800 865 WPGDPAARDALTTA 878 (897)
T ss_pred cCCCHHHHHHHHHH
Confidence 32223444444433
No 425
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.18 E-value=2.9e+02 Score=27.65 Aligned_cols=88 Identities=15% Similarity=0.192 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC------CCchhHHHHHHHHHhcCChHHHHHHHHHHHHC---------CCCCCHH
Q 005881 417 GSALVDMYAKCGRLNDARKVFDHLSS------KNLVSWNTMLVGYAQHGLGREALEIYSMMQEN---------KIKPNDN 481 (672)
Q Consensus 417 ~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------g~~p~~~ 481 (672)
+.-+.+-|..+|+++.|.+.+.+... .-+..|-.+|..-...|+|.....+-.+.... .+++...
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~ 232 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLK 232 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchH
Confidence 45677889999999999999988652 22345666777777778887777776666553 1333344
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHh
Q 005881 482 TFIGVLSACVHIGLVEEGWHYFNSM 506 (672)
Q Consensus 482 ~~~~ll~~~~~~g~~~~a~~~~~~~ 506 (672)
++..+...+.+ ++..|...|-..
T Consensus 233 C~agLa~L~lk--kyk~aa~~fL~~ 255 (466)
T KOG0686|consen 233 CAAGLANLLLK--KYKSAAKYFLLA 255 (466)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHhC
Confidence 55555544443 777777766544
No 426
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=48.63 E-value=1.3e+02 Score=32.17 Aligned_cols=90 Identities=13% Similarity=0.122 Sum_probs=34.7
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 005881 142 SISWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCASVLGACAVLGNLKVGMQIHSLVFKCALEFDKFVAMGLINL 221 (672)
Q Consensus 142 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 221 (672)
...|..-+..+...++.. ....+.+..+-.-.+......++..|...|-.+.+..+.+.+-..-.. ..-+..-+.-
T Consensus 372 ~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~ 447 (566)
T PF07575_consen 372 HSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSW 447 (566)
T ss_dssp TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHH
Confidence 334555555544433222 444444444433344555566666666666666666666555433221 1223344444
Q ss_pred hhcCCChhHHHHHH
Q 005881 222 YAKCEKLDLASRVF 235 (672)
Q Consensus 222 ~~~~g~~~~a~~~~ 235 (672)
+.++|+.+....+-
T Consensus 448 ~~ra~d~~~v~~i~ 461 (566)
T PF07575_consen 448 FIRAGDYSLVTRIA 461 (566)
T ss_dssp HH------------
T ss_pred HHHCCCHHHHHHHH
Confidence 55666655544443
No 427
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.28 E-value=2.5e+02 Score=28.00 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=42.8
Q ss_pred hhhHHHHHHhcCCChhHHHHHhccCCC------CCcchHHHHHHHHHcCCCchhHHHHHHHhHhC
Q 005881 12 TYNHLLLMYVKFSRINDAQKLFDEMPE------RNVISWSALISGFSQIGMPEVALNYFRLMVCC 70 (672)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 70 (672)
.+.-+.+.|..+|+++.|.+.|.+... ..+..|-.+|.+-.-.|+|.....+-.+....
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 456677788889999999999888654 22334667777777788888877777776653
No 428
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=47.81 E-value=1.2e+02 Score=22.71 Aligned_cols=64 Identities=13% Similarity=0.138 Sum_probs=32.8
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhhccCCCCcccHHHHHHHHHhcCChHHH
Q 005881 96 KEIHGRMYRSGLELNSHVSNCLINMYGKCGLLSSAQFVFDASLERNSISWVSLLSSYCQCGEHVHG 161 (672)
Q Consensus 96 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 161 (672)
.++++.+.+.|+- +......+-.+-...|+.+.|.++++.++ +....|...++++-..|.-+-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3455555555532 22222222222224466666666666666 6666666666666665554433
No 429
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=47.56 E-value=81 Score=27.94 Aligned_cols=51 Identities=14% Similarity=-0.020 Sum_probs=31.6
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhC
Q 005881 492 HIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSS 542 (672)
Q Consensus 492 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (672)
...+.+......+.+.+.....|++.+|..++.++...|+.++|.+...++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555444444444444455677777777777777777777777766653
No 430
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=47.08 E-value=46 Score=19.27 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHhcCCCCCCchHHHHH
Q 005881 563 DLVLGRYAAEKILSTDPEDTSAHIMLS 589 (672)
Q Consensus 563 ~~~~a~~~~~~~~~~~p~~~~~~~~l~ 589 (672)
.++.|..+|++.+...| ++..|...+
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 46778888888888877 566665544
No 431
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=46.67 E-value=71 Score=20.55 Aligned_cols=33 Identities=15% Similarity=0.040 Sum_probs=19.2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 005881 153 CQCGEHVHGLKIFLLSRKSGVAISEFSCASVLG 185 (672)
Q Consensus 153 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 185 (672)
.+.|-..++..+++.|.+.|+..+...|..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345555566666666666666665555555543
No 432
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=45.32 E-value=44 Score=31.63 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=32.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005881 447 SWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGV 486 (672)
Q Consensus 447 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 486 (672)
-|+.-|..-.+.||+++|++++++....|+.--..+|...
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 4678899999999999999999999998876555566543
No 433
>PRK14015 pepN aminopeptidase N; Provisional
Probab=45.13 E-value=5.2e+02 Score=29.54 Aligned_cols=106 Identities=15% Similarity=0.137 Sum_probs=62.7
Q ss_pred HHHHHHHHHhHHhhCCCCc-hHHHHHHHHHhhccCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC-------HHHH
Q 005881 497 EEGWHYFNSMIRDHGISPR-MDHIASVVHLFACRGQTRRAYEFIKSSPIEP-NKVVWRCLLSGCKTHKD-------LVLG 567 (672)
Q Consensus 497 ~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~-------~~~a 567 (672)
+++++.|. ++..-.|- .+-|-++-..-...+-++...++.+.-.+.+ |+.-..+|+.++...+. -..=
T Consensus 733 ~~~l~~f~---~~~~~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~hp~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy 809 (875)
T PRK14015 733 DEALADFY---DRWKDDPLVMDKWFALQATSPAPDTLERVRALMQHPAFDLKNPNRVRSLIGAFAAANPAGFHAADGSGY 809 (875)
T ss_pred HHHHHHHH---HHhCCCchhhHHHHHHHhCCCCcCHHHHHHHHhcCCCCCCCCCcHHHHHHHHHhhcCCcccCCCCCcHH
Confidence 34554444 33333442 2444444333333344455555555433333 44556788888754332 2223
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 005881 568 RYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVR 605 (672)
Q Consensus 568 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 605 (672)
.-+.+.++++++-||..-..|+..+.+-.++++..+..
T Consensus 810 ~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~~~~r~~~ 847 (875)
T PRK14015 810 RFLADQILALDKINPQVAARLATPLIRWRRYDPKRQAL 847 (875)
T ss_pred HHHHHHHHHhcCcCHHHHHHHHHHhhhhhccCHHHHHH
Confidence 44567778999999999999999999988888777744
No 434
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=44.85 E-value=2.7e+02 Score=26.21 Aligned_cols=31 Identities=16% Similarity=0.265 Sum_probs=22.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCChhhH
Q 005881 251 GGYAQLGKACEAIDLFVKMFSSGLMPSEVTF 281 (672)
Q Consensus 251 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~ 281 (672)
.-..+.+++++|+..+.+....|+..|..+.
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~ 41 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTL 41 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhh
Confidence 3445677788888888888888877666554
No 435
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=44.74 E-value=1.5e+02 Score=23.16 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=29.3
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 005881 423 MYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTF 483 (672)
Q Consensus 423 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 483 (672)
.+.+.|++++|...=.....||...|-+|- -.+.|-.+++...+.++-.+| .|....|
T Consensus 49 sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~~g-~~~~q~F 106 (116)
T PF09477_consen 49 SLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLASSG-SPELQAF 106 (116)
T ss_dssp HHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT-S-SHHHHHH
T ss_pred HHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 345667777774444444456666665543 235666666666666665554 3433333
No 436
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.59 E-value=4.1 Score=38.67 Aligned_cols=64 Identities=6% Similarity=0.003 Sum_probs=54.3
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCCceeE
Q 005881 558 CKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKSLKKDTGCSW 621 (672)
Q Consensus 558 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 621 (672)
....|.++.|++.+..+++++|.....|...+.++.+.+++..|++-++...+.+....-++-|
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykf 187 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKF 187 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccch
Confidence 4567889999999999999999999999999999999999999999999887655554444444
No 437
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=44.20 E-value=41 Score=31.74 Aligned_cols=77 Identities=9% Similarity=-0.027 Sum_probs=44.9
Q ss_pred chHHHHHHHHHhhccCChHHHHHHHHh-CCCCC-CHHHHHHH-HHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 005881 515 RMDHIASVVHLFACRGQTRRAYEFIKS-SPIEP-NKVVWRCL-LSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNV 591 (672)
Q Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 591 (672)
|+..|...+.-..+.|.+.+...++.+ +...| |...|-.. .--+..+++++.+...+.+.++++|++|..|.....+
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~ 185 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRM 185 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHH
Confidence 344444333333334444444444432 12334 44455332 2225678899999999999999999999888765544
No 438
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=44.10 E-value=37 Score=34.18 Aligned_cols=119 Identities=15% Similarity=0.149 Sum_probs=70.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHhhccCcHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHhhcc
Q 005881 452 LVGYAQHGLGREALEIYSMMQENKIKPNDNTF-IGVLSACVHIGLVEEGWHYFNSMIRDHGISPR-MDHIASVVHLFACR 529 (672)
Q Consensus 452 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 529 (672)
...+...+.++.|..++.+.++ +.||...| ..-..++.+.+++..|+.=+..++ ...|+ ...|-.=+.++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kai---e~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAI---ELDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhh---hcCchhhheeeeccHHHHhH
Confidence 3445566788999999999988 57877654 334477888888888887666665 23443 12222223333344
Q ss_pred CChHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 005881 530 GQTRRAYEFIKS-SPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDP 579 (672)
Q Consensus 530 g~~~~A~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 579 (672)
+.+.+|+..|+. ..+.|+..-..-.+.-|... ..+.-|++++-..+
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~----vs~~~fe~ai~~~~ 132 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECNKI----VSEEKFEKAILTPE 132 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHH----HHHHhhhhcccCCc
Confidence 455666655554 24567766665566555433 23334555554444
No 439
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=43.72 E-value=1.7e+02 Score=29.58 Aligned_cols=44 Identities=16% Similarity=0.370 Sum_probs=30.4
Q ss_pred HHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 005881 538 FIKSSPIEPNK--VVWRCLLSGCKTHKDLVLGRYAAEKILSTDPED 581 (672)
Q Consensus 538 ~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 581 (672)
+|....+.|.. .+..+.+..+.+++++..|-...++++++.|..
T Consensus 288 YFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 288 YFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 34555566643 356777788999999999999999999999843
No 440
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=43.68 E-value=5.5e+02 Score=29.33 Aligned_cols=89 Identities=12% Similarity=0.067 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC-------HHHHHHHHHHHhcCCCCCCchHHHH
Q 005881 517 DHIASVVHLFACRGQTRRAYEFIKSSPIEP-NKVVWRCLLSGCKTHKD-------LVLGRYAAEKILSTDPEDTSAHIML 588 (672)
Q Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~-------~~~a~~~~~~~~~~~p~~~~~~~~l 588 (672)
+-|-++...-...+-++...++.+.-.+.+ |+.-..+|+.++...+. -..=.-+.+.++++++-||..-..|
T Consensus 741 ~kwf~~qa~~~~~~~~~~v~~l~~h~~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl 820 (863)
T TIGR02414 741 DKWFALQATSPRPDTLERVKALLQHPAFDLKNPNRVRALIGAFANNNLVRFHDISGSGYRFLADQIIAIDRFNPQVAARL 820 (863)
T ss_pred HHHHHHHhCCCcccHHHHHHHHhcCCCCCcCCCcHHHHHHHHHHhcCcccccCCCCcHHHHHHHHHHHhcCcCHHHHHHH
Confidence 344444333333444455555554433333 44556788888753332 2223445677789999999999999
Q ss_pred HHHHHhcCChHHHHHHH
Q 005881 589 SNVYAEANMWDETAKVR 605 (672)
Q Consensus 589 ~~~~~~~g~~~~a~~~~ 605 (672)
+..+.+-.++++..+..
T Consensus 821 ~~~~~~w~~~~~~r~~~ 837 (863)
T TIGR02414 821 LEPLTRWRKLDPKRQEL 837 (863)
T ss_pred HHHhhhhhcCCHHHHHH
Confidence 99999988888877743
No 441
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=42.95 E-value=2.4e+02 Score=24.89 Aligned_cols=97 Identities=10% Similarity=0.022 Sum_probs=49.1
Q ss_pred HHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCC--
Q 005881 333 LKTFDEMDEHDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGF-- 410 (672)
Q Consensus 333 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-- 410 (672)
..+.++..++..+.|.....+-++.-+.+++-+.|- ...=.+++-.|.+..++.+++.+++.+-+..+
T Consensus 96 ~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~L----------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~f 165 (233)
T PF14669_consen 96 EALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLL----------GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHF 165 (233)
T ss_pred HHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334444444555666666666666544444333221 11122345556666667777777666654322
Q ss_pred ------------CCcccHHHHHHHHHHhcCCHHHHHHHHhh
Q 005881 411 ------------DSNVVIGSALVDMYAKCGRLNDARKVFDH 439 (672)
Q Consensus 411 ------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 439 (672)
.+--.+.|.-...+.++|.+|.|..++++
T Consensus 166 t~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 166 TSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred hhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 12223344455555566666666655553
No 442
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=41.98 E-value=1.9e+02 Score=23.54 Aligned_cols=42 Identities=10% Similarity=0.089 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHHHHHHHH
Q 005881 463 EALEIYSMMQENKIKPNDN-TFIGVLSACVHIGLVEEGWHYFN 504 (672)
Q Consensus 463 ~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~ 504 (672)
.+.++|..|..+|+--... -|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6667777777666555443 45555555666666777766665
No 443
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=41.91 E-value=50 Score=31.29 Aligned_cols=40 Identities=18% Similarity=0.176 Sum_probs=32.6
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHH
Q 005881 346 SWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNI 385 (672)
Q Consensus 346 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~l 385 (672)
-|+.-|..-.+.|++++|+.++++..+.|+.--..||...
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 4678899999999999999999999999887666666443
No 444
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=41.91 E-value=33 Score=27.86 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=23.9
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 005881 355 LASCHYGEAIELLKDMLFEGHCPNLYTYSNILNI 388 (672)
Q Consensus 355 ~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 388 (672)
-..|.-..|..+|++|...|-.||. |+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 3456667899999999999999986 4455543
No 445
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=41.42 E-value=3.8e+02 Score=26.84 Aligned_cols=123 Identities=12% Similarity=0.078 Sum_probs=68.5
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCch----HHHHHHHHH
Q 005881 458 HGLGREALEIYSMMQENKIKPNDN--------TFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRM----DHIASVVHL 525 (672)
Q Consensus 458 ~g~~~~A~~~~~~m~~~g~~p~~~--------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~ 525 (672)
++++.+|.++-+.....-.--|.. +|..+-.++-..|+...-...+....+...+..|. -..++|++.
T Consensus 139 ~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~ 218 (493)
T KOG2581|consen 139 QKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRN 218 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHH
Confidence 455666666555444321122222 23333344555666666666666555444444443 345666777
Q ss_pred hhccCChHHHHHHHHhCCCCCCHH---HHHH----HHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 005881 526 FACRGQTRRAYEFIKSSPIEPNKV---VWRC----LLSGCKTHKDLVLGRYAAEKILSTDPED 581 (672)
Q Consensus 526 ~~~~g~~~~A~~~~~~~~~~p~~~---~~~~----l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 581 (672)
|...+.++.|.+++.+.. -|+.. -|.- +...-..++++..|.+.+-+++...|++
T Consensus 219 yL~n~lydqa~~lvsK~~-~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 219 YLHNKLYDQADKLVSKSV-YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HhhhHHHHHHHHHhhccc-CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 777888888888887754 23221 2211 1122345678888888888887777753
No 446
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=40.55 E-value=50 Score=22.71 Aligned_cols=25 Identities=24% Similarity=0.212 Sum_probs=16.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 005881 449 NTMLVGYAQHGLGREALEIYSMMQE 473 (672)
Q Consensus 449 ~~li~~~~~~g~~~~A~~~~~~m~~ 473 (672)
-.+|.+|.+.|++++|.++.+++..
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3467777777777777777776654
No 447
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=40.43 E-value=8.9e+02 Score=30.86 Aligned_cols=126 Identities=14% Similarity=0.069 Sum_probs=61.4
Q ss_pred HHHHHHhhcCCChhHHHHHHh-cCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHhhccCC
Q 005881 216 MGLINLYAKCEKLDLASRVFS-NIQLPDLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPS-EVTFSYVLGAFADVKE 293 (672)
Q Consensus 216 ~~li~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~ 293 (672)
..+...|..-+++|...-+.. ....|+ ...-|......|++..|...|+.+.+.+ |+ ..+++-++......+.
T Consensus 1424 fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~ 1498 (2382)
T KOG0890|consen 1424 FLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQH 1498 (2382)
T ss_pred HHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHHHHHHHHhhcCC--CccccchhhHHHhhhcccc
Confidence 334446666666665555544 222222 2223334555677777777777776653 33 5556666655555555
Q ss_pred chhHHHHHHHHHHhCCCCchHHH-HHHHHHHHccCChHHHHHHHhhCCCCCcccHHHH
Q 005881 294 TIGGRQLHSLIIKMGFSSFTFVA-NTVLDFYSKCELLEESLKTFDEMDEHDVVSWNAL 350 (672)
Q Consensus 294 ~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 350 (672)
++...-..+-.... ..+...-+ +.=+.+--+.++++....... ..+..+|.+.
T Consensus 1499 l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1499 LSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVE 1552 (2382)
T ss_pred hhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHH
Confidence 55444322222211 12222222 222333355666666655554 4455555554
No 448
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=39.80 E-value=2e+02 Score=28.98 Aligned_cols=56 Identities=13% Similarity=-0.001 Sum_probs=36.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHh--------cCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 005881 554 LLSGCKTHKDLVLGRYAAEKIL--------STDPEDTSAHIMLSNVYAEANMWDETAKVRKIMK 609 (672)
Q Consensus 554 l~~~~~~~g~~~~a~~~~~~~~--------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 609 (672)
|++...-.||+..|+++++.+- ...+-+..++..++-+|.-.+++.+|.+.|....
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566666666655431 1223355677788888888888888888887664
No 449
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=39.28 E-value=36 Score=24.61 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhCCccCCCCC
Q 005881 642 IDLHEVMNQLSVHLFDGGYVPDPIY 666 (672)
Q Consensus 642 ~~~~~~l~~~~~~~~~~g~~~~~~~ 666 (672)
.++.+.++....+++..|+.||-..
T Consensus 8 i~il~~ie~~inELk~dG~ePDivL 32 (85)
T PF08967_consen 8 IRILELIEEKINELKEDGFEPDIVL 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHTT----EEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 4567788888899999999999643
No 450
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=39.10 E-value=97 Score=28.84 Aligned_cols=19 Identities=21% Similarity=0.167 Sum_probs=8.1
Q ss_pred HHHHhcCChHHHHHHHHHH
Q 005881 453 VGYAQHGLGREALEIYSMM 471 (672)
Q Consensus 453 ~~~~~~g~~~~A~~~~~~m 471 (672)
.-|...|++++|.++|+.+
T Consensus 186 ~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 186 EEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 3344444444444444443
No 451
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=38.86 E-value=3.7e+02 Score=26.05 Aligned_cols=97 Identities=18% Similarity=0.062 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhHHhhCC---CCchHHHHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005881 496 VEEGWHYFNSMIRDHGI---SPRMDHIASVVHLFACRGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAE 572 (672)
Q Consensus 496 ~~~a~~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 572 (672)
.+.|.+.|+........ ..+++....+.....+.|..++-..+++.....++...-..++.+.....+.+....+++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 56788888887753122 446677777777788888876655555554445577777888888888889999899999
Q ss_pred HHhcCC-CCCCchHHHHHHHH
Q 005881 573 KILSTD-PEDTSAHIMLSNVY 592 (672)
Q Consensus 573 ~~~~~~-p~~~~~~~~l~~~~ 592 (672)
.++.-+ -........+..+.
T Consensus 226 ~~l~~~~v~~~d~~~~~~~~~ 246 (324)
T PF11838_consen 226 LLLSNDKVRSQDIRYVLAGLA 246 (324)
T ss_dssp HHHCTSTS-TTTHHHHHHHHH
T ss_pred HHcCCcccccHHHHHHHHHHh
Confidence 998843 22333444444443
No 452
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=38.63 E-value=79 Score=19.18 Aligned_cols=28 Identities=11% Similarity=0.108 Sum_probs=22.9
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 583 SAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
.+|..|+.+-...+++++|.+-++...+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4678889999999999999888877653
No 453
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=38.41 E-value=67 Score=22.08 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=12.7
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhH
Q 005881 483 FIGVLSACVHIGLVEEGWHYFNSMI 507 (672)
Q Consensus 483 ~~~ll~~~~~~g~~~~a~~~~~~~~ 507 (672)
...++.++...|++++|.++.+.+.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344555555555555555555444
No 454
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=38.33 E-value=2.6e+02 Score=27.17 Aligned_cols=86 Identities=8% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC-------CCCchhH--HHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHH
Q 005881 416 IGSALVDMYAKCGRLNDARKVFDHLS-------SKNLVSW--NTMLVGYAQHGLGREALEIYSMMQE-----NKIKPNDN 481 (672)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~ 481 (672)
....++...-++++.++|.++++++. +|+.+.| ..+...+...|+..++.+++++..+ -|++|+..
T Consensus 77 lvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 77 LVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Q ss_pred H--HHHHHHHhhccCcHHHHHH
Q 005881 482 T--FIGVLSACVHIGLVEEGWH 501 (672)
Q Consensus 482 ~--~~~ll~~~~~~g~~~~a~~ 501 (672)
+ |..=-..|...|++...-+
T Consensus 157 ~~fY~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 157 SSFYSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred hhHHHHHHHHHHHHHhHHHHHH
No 455
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=36.84 E-value=2.8e+02 Score=24.46 Aligned_cols=52 Identities=19% Similarity=0.365 Sum_probs=27.3
Q ss_pred HHHhcCCHHHHHHHHhhCCC------CCchhHHHHHH-HHHhcC--ChHHHHHHHHHHHHC
Q 005881 423 MYAKCGRLNDARKVFDHLSS------KNLVSWNTMLV-GYAQHG--LGREALEIYSMMQEN 474 (672)
Q Consensus 423 ~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~-~~~~~g--~~~~A~~~~~~m~~~ 474 (672)
.....|++++|..-++.+.+ .-...|..+.. +++.++ .+-+|.-++.-....
T Consensus 38 ~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 38 FLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 34455677777776666542 22234555444 555554 344555555555443
No 456
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=36.72 E-value=1e+02 Score=24.93 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=27.8
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHh
Q 005881 559 KTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAE 594 (672)
Q Consensus 559 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 594 (672)
...-+.+.|.++|+.+++..|++..++..+++.+..
T Consensus 87 iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 87 IAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp HTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 345567899999999999999999999988887655
No 457
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=35.87 E-value=2.4e+02 Score=27.56 Aligned_cols=81 Identities=14% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC------------HHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChH
Q 005881 533 RRAYEFIKSSPIEP-NKVVWRCLLSGCKTHKD------------LVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWD 599 (672)
Q Consensus 533 ~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 599 (672)
.+..++=++....| |..+|-.++..--..-. .+.-+.+++++++.+|++...+..+...+.+..+-+
T Consensus 3 ~r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~ 82 (321)
T PF08424_consen 3 KRTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSE 82 (321)
T ss_pred hHHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH
Q ss_pred HHHHHHHHHhhCCC
Q 005881 600 ETAKVRKIMKEKSL 613 (672)
Q Consensus 600 ~a~~~~~~~~~~~~ 613 (672)
+..+-++.+.....
T Consensus 83 ~l~~~we~~l~~~~ 96 (321)
T PF08424_consen 83 KLAKKWEELLFKNP 96 (321)
T ss_pred HHHHHHHHHHHHCC
No 458
>PRK13342 recombination factor protein RarA; Reviewed
Probab=35.37 E-value=5e+02 Score=26.49 Aligned_cols=48 Identities=23% Similarity=0.198 Sum_probs=33.5
Q ss_pred cHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcC
Q 005881 346 SWNALIAGHLA---SCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIP 393 (672)
Q Consensus 346 ~~~~li~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 393 (672)
.+..+++++.+ .++++.|+..+..|.+.|..|....-..+..++...|
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 34455666555 5889999999999999998887665555555544433
No 459
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=34.10 E-value=4.4e+02 Score=28.33 Aligned_cols=71 Identities=14% Similarity=0.169 Sum_probs=36.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC---C---CchhHHHHHHHHHhcCChH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 005881 419 ALVDMYAKCGRLNDARKVFDHLSS---K---NLVSWNTMLVGYAQHGLGR------EALEIYSMMQENKIKPNDNTFIGV 486 (672)
Q Consensus 419 ~l~~~~~~~g~~~~A~~~~~~~~~---~---~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p~~~~~~~l 486 (672)
+|..+|...|++-++.++++.... . =...+|..|..+.+.|.++ .|.+++++. .+.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 455555555555555555554431 1 1234555566666666543 233333332 245666777776
Q ss_pred HHHhhc
Q 005881 487 LSACVH 492 (672)
Q Consensus 487 l~~~~~ 492 (672)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665544
No 460
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=33.76 E-value=1.7e+02 Score=25.24 Aligned_cols=61 Identities=5% Similarity=-0.025 Sum_probs=35.2
Q ss_pred hHhCCCCCCcccHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH
Q 005881 67 MVCCVLEPNYYTYVGAVSACASRGDARSGKEIHGRMYRSGLELNSHVSNCLINMYGKCGLLS 128 (672)
Q Consensus 67 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 128 (672)
++..|++++..- ..++..+...++.-.|.++++.+.+.+...+..|--.-|+.+.+.|-+.
T Consensus 17 L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 344555554442 2444444444556667777777777766666655555566666666543
No 461
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=33.57 E-value=1.4e+02 Score=25.99 Aligned_cols=29 Identities=17% Similarity=0.391 Sum_probs=18.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCch
Q 005881 555 LSGCKTHKDLVLGRYAAEKILSTDPEDTSA 584 (672)
Q Consensus 555 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 584 (672)
+..|.+.|.+++|.+++++..+ +|++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 3446677777777777777666 5544433
No 462
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=33.55 E-value=2e+02 Score=21.40 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=22.1
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHHHhcC
Q 005881 198 QIHSLVFKCALEFDKFVAMGLINLYAKCEKLDLASRVFSNI 238 (672)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 238 (672)
++|+.....|+..|+.+|..+++...-+=..+...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 55555555666666666666655554444444444444443
No 463
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=33.48 E-value=1.5e+02 Score=21.78 Aligned_cols=17 Identities=12% Similarity=0.262 Sum_probs=7.3
Q ss_pred HHHhcCChHHHHHHhhc
Q 005881 120 MYGKCGLLSSAQFVFDA 136 (672)
Q Consensus 120 ~~~~~g~~~~a~~~~~~ 136 (672)
..+..|+.+-+..+++.
T Consensus 32 ~A~~~~~~~~~~~Ll~~ 48 (89)
T PF12796_consen 32 YAAENGNLEIVKLLLEN 48 (89)
T ss_dssp HHHHTTTHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHh
Confidence 33344444444444443
No 464
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=33.27 E-value=1e+02 Score=30.63 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=8.6
Q ss_pred HHHHhhccCChHHHHHH
Q 005881 522 VVHLFACRGQTRRAYEF 538 (672)
Q Consensus 522 l~~~~~~~g~~~~A~~~ 538 (672)
|+.+|.+.++.+-|+.-
T Consensus 234 lv~CYL~~rkpdlALnh 250 (569)
T PF15015_consen 234 LVTCYLRMRKPDLALNH 250 (569)
T ss_pred HHHhhhhcCCCchHHHH
Confidence 34455555555555444
No 465
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=33.21 E-value=4e+02 Score=25.56 Aligned_cols=70 Identities=10% Similarity=0.029 Sum_probs=37.2
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHHHhcCCCCCcchHHHHHHHHHh----------cCChhHHHHHH
Q 005881 197 MQIHSLVFKCALEFDKFVAMGLINLYAKCEKLDLASRVFSNIQLPDLTAWSALIGGYAQ----------LGKACEAIDLF 266 (672)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~----------~~~~~~a~~~~ 266 (672)
.++|+.+...++.|.-+.+.-+.-++...=.+.+...+|+.+.. |..-|..++..||. .|++...++++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-D~~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLL 341 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-DPQRFDFLLYICCSMLILVRERILEGDFTVNMKLL 341 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-ChhhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34555566556666666555555555666666666666666542 11224444444332 35565555555
Q ss_pred H
Q 005881 267 V 267 (672)
Q Consensus 267 ~ 267 (672)
+
T Consensus 342 Q 342 (370)
T KOG4567|consen 342 Q 342 (370)
T ss_pred h
Confidence 4
No 466
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=33.16 E-value=4.4e+02 Score=25.13 Aligned_cols=46 Identities=13% Similarity=-0.072 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcC---------------ChHHHHHHHHHHhh
Q 005881 562 KDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEAN---------------MWDETAKVRKIMKE 610 (672)
Q Consensus 562 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~~~~ 610 (672)
.|.++|...|.++-+.+. ......++ ++...| +...|...+.....
T Consensus 205 ~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~ 265 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACE 265 (292)
T ss_pred cCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHH
Confidence 367777777777777665 44555555 555444 55555555555544
No 467
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=32.63 E-value=1.9e+02 Score=24.19 Aligned_cols=41 Identities=17% Similarity=0.076 Sum_probs=20.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 005881 248 ALIGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAF 288 (672)
Q Consensus 248 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 288 (672)
.++..+.+.+..-.|.++++++.+.+...+..|.-..|+.+
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l 65 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLL 65 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHH
Confidence 34444444544455555555555555444444443333333
No 468
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=32.52 E-value=2.2e+02 Score=30.30 Aligned_cols=73 Identities=15% Similarity=0.178 Sum_probs=41.3
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCChH------HHHHHhhccC-CCCcccHHHHHHH
Q 005881 81 GAVSACASRGDARSGKEIHGRMYRSG--LELNSHVSNCLINMYGKCGLLS------SAQFVFDASL-ERNSISWVSLLSS 151 (672)
Q Consensus 81 ~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~------~a~~~~~~~~-~~~~~~~~~li~~ 151 (672)
+++.+|...|++..+.++++...... -+.-...+|..|+-..+.|.++ .|.+.++... .-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 77888888888888888887777653 1222345566666666666543 2233333221 2245555555554
Q ss_pred HH
Q 005881 152 YC 153 (672)
Q Consensus 152 ~~ 153 (672)
..
T Consensus 113 sl 114 (1117)
T COG5108 113 SL 114 (1117)
T ss_pred hc
Confidence 43
No 469
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=32.44 E-value=4.1e+02 Score=24.56 Aligned_cols=40 Identities=10% Similarity=-0.020 Sum_probs=23.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 005881 350 LIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNIS 389 (672)
Q Consensus 350 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 389 (672)
++...-+.++++++...++++...+...+..--+.+-.+|
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 4455666777788888888777776555555444444443
No 470
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=32.40 E-value=5.8e+02 Score=26.35 Aligned_cols=113 Identities=11% Similarity=0.042 Sum_probs=64.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHh---hCCCccCCceeEEEeCCEEEEE
Q 005881 555 LSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMK---EKSLKKDTGCSWTELQNKMHYF 631 (672)
Q Consensus 555 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 631 (672)
+.++.+..++..++.-.+.+....-+.+.....-.+.+...|++..|.+++...- ..|.-+.|.++.--..|++..+
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcI 292 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCI 292 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceE
Confidence 3445566666666666666665555667777788889999999999999876531 2233333334332233444333
Q ss_pred EeccccCCChHHHHHHHH-HHHHHHHhCCccCCCCCCC
Q 005881 632 STSRFAQFQGIDLHEVMN-QLSVHLFDGGYVPDPIYSS 668 (672)
Q Consensus 632 ~~~~~~~~~~~~~~~~l~-~~~~~~~~~g~~~~~~~~~ 668 (672)
.-.-..|..+...+.... +...++. .|.+|-+.+.+
T Consensus 293 h~~~~~y~~~~~~F~kAL~N~c~qL~-~g~~~~~~~tl 329 (696)
T KOG2471|consen 293 HYQLGCYQASSVLFLKALRNSCSQLR-NGLKPAKTFTL 329 (696)
T ss_pred eeehhhHHHHHHHHHHHHHHHHHHHh-ccCCCCcceeh
Confidence 322233333333333322 3444443 48888776654
No 471
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=32.08 E-value=7.7e+02 Score=27.69 Aligned_cols=54 Identities=20% Similarity=0.018 Sum_probs=28.6
Q ss_pred HhcCChhHHHHHHHHHHHC----CCCCChhhHHHHHHHhhccCCchhHHHHHHHHHHh
Q 005881 254 AQLGKACEAIDLFVKMFSS----GLMPSEVTFSYVLGAFADVKETIGGRQLHSLIIKM 307 (672)
Q Consensus 254 ~~~~~~~~a~~~~~~m~~~----~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 307 (672)
...|++++|.++.+..... -..+....+..+..+..-.|++++|..+.....+.
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 3456666666666555442 12233344444455555566666666665555443
No 472
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=31.97 E-value=1.8e+02 Score=25.19 Aligned_cols=45 Identities=13% Similarity=0.000 Sum_probs=24.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccC
Q 005881 248 ALIGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVK 292 (672)
Q Consensus 248 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 292 (672)
.++..+...+..-.|.++++.+.+.+..++..|.-..|..+...|
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 344444444555566666666666665566666554554444444
No 473
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=31.80 E-value=7.3e+02 Score=27.28 Aligned_cols=172 Identities=12% Similarity=0.123 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC-CCch----------hHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHH
Q 005881 416 IGSALVDMYAKCGRLNDARKVFDHLSS-KNLV----------SWNTMLVGYAQHGLGREALEIYSMMQEN--KIKPNDNT 482 (672)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~----------~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~ 482 (672)
+...++-.|....+++...++.+.+.. ||.. .|.--+.-=-+-|+-++|+...-.|.+. .+.||..+
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~C 282 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYC 282 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceee
Confidence 334455555566667766666666552 2211 1211111112346677777777666653 35677643
Q ss_pred -----HHH--HHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCC-hHHHHHHHHhCCCCCCHHHHHHH
Q 005881 483 -----FIG--VLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQ-TRRAYEFIKSSPIEPNKVVWRCL 554 (672)
Q Consensus 483 -----~~~--ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~p~~~~~~~l 554 (672)
|.- +-+.|..++..+.|.+.|++.- .+.|....=..+...+..+|. ++...+ ++.++. ..++|
T Consensus 283 l~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~Fens~E-lq~Igm-----kLn~L 353 (1226)
T KOG4279|consen 283 LCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHFENSLE-LQQIGM-----KLNSL 353 (1226)
T ss_pred eechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhccchHH-HHHHHH-----HHHHH
Confidence 222 1223556667778888887544 677766544444444544443 232222 222221 22233
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 005881 555 LSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 555 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 611 (672)
..+.|.++.-..+++-+.-++ +-.-++++.+|.+.-+.|-+.
T Consensus 354 ---lgrKG~leklq~YWdV~~y~~------------asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 354 ---LGRKGALEKLQEYWDVATYFE------------ASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred ---hhccchHHHHHHHHhHHHhhh------------hhhhccCHHHHHHHHHHHhcc
Confidence 346777777777766543222 122346788888888887653
No 474
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=31.44 E-value=2.3e+02 Score=21.39 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=27.5
Q ss_pred HhcCChHHHHHHHHHHHH----CCCCCC--H--HHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 005881 456 AQHGLGREALEIYSMMQE----NKIKPN--D--NTFIGVLSACVHIGLVEEGWHYFNSMIR 508 (672)
Q Consensus 456 ~~~g~~~~A~~~~~~m~~----~g~~p~--~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 508 (672)
.+.|++..|.+.+.+..+ .+..+. . .....+.......|.+++|...+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455677777555444432 222221 1 1222334445566777777777776653
No 475
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.98 E-value=6.8e+02 Score=28.13 Aligned_cols=130 Identities=13% Similarity=0.102 Sum_probs=84.9
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHH
Q 005881 423 MYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHY 502 (672)
Q Consensus 423 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 502 (672)
....+|+++.|.+.-..+. +..+|..|+..-..+|+.+-|.-.|++... |..|--.|.-.|+.++-.++
T Consensus 652 LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHH
Confidence 3456788888888776654 446899999999999999999888887654 23333346667888877666
Q ss_pred HHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 005881 503 FNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILS 576 (672)
Q Consensus 503 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 576 (672)
.+... .+-|... ....-.-.|+.++=.++++..+..|- .|. ....+|.-++|.++.++.-.
T Consensus 721 ~~iae----~r~D~~~---~~qnalYl~dv~ervkIl~n~g~~~l--ayl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 721 MKIAE----IRNDATG---QFQNALYLGDVKERVKILENGGQLPL--AYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHH----hhhhhHH---HHHHHHHhccHHHHHHHHHhcCcccH--HHH----HHhhcCcHHHHHHHHHhhcc
Confidence 54432 2222211 11112236788888888887764332 221 23467888899988887755
No 476
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=30.92 E-value=5.3e+02 Score=25.94 Aligned_cols=56 Identities=11% Similarity=0.011 Sum_probs=38.4
Q ss_pred HHHHcCCCchhHHHHHHHhHhCCCCCCcc--cHHHHHHHHh--cCCChhhHHHHHHHHHHh
Q 005881 49 SGFSQIGMPEVALNYFRLMVCCVLEPNYY--TYVGAVSACA--SRGDARSGKEIHGRMYRS 105 (672)
Q Consensus 49 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 105 (672)
..+...+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445788899999999998876 666665 3333434432 456778888888877665
No 477
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=30.16 E-value=9.1e+02 Score=27.89 Aligned_cols=196 Identities=9% Similarity=-0.040 Sum_probs=100.8
Q ss_pred CchHHHHHHHHHHHccCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHc
Q 005881 311 SFTFVANTVLDFYSKCELLEESLKTFDEMDEHDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISS 390 (672)
Q Consensus 311 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 390 (672)
++..+-...+..+...+..+ ...+...+..+|...-...+.++.+.+..+. +.... -.++...-.....++.
T Consensus 696 ~d~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLA 767 (897)
T ss_pred CCHHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHH
Confidence 34444444555544332111 2234444555665555555555555544322 11221 1344444444555555
Q ss_pred CcCchHH-HHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHH-HHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 005881 391 DIPAIEW-GKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDAR-KVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIY 468 (672)
Q Consensus 391 ~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 468 (672)
..+..+. +...+..+.+ .++..+-.+.+..+.+.|..+.+. .+...+..++...-...+.++...+. +++...+
T Consensus 768 ~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L 843 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPAL 843 (897)
T ss_pred HhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHH
Confidence 5544332 2233333332 235566667777888888765543 34444556665555556677777665 4566666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHH
Q 005881 469 SMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHL 525 (672)
Q Consensus 469 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 525 (672)
-.+.+ .|+...-...+.++.+.+....+...+..+.. .++..+-..-..+
T Consensus 844 ~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~----D~d~~Vr~~A~~a 893 (897)
T PRK13800 844 VEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT----DSDADVRAYARRA 893 (897)
T ss_pred HHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh----CCCHHHHHHHHHH
Confidence 66665 56666666667777665434456666665553 3444444333333
No 478
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=30.15 E-value=1.6e+02 Score=21.55 Aligned_cols=14 Identities=7% Similarity=0.116 Sum_probs=7.2
Q ss_pred hcCCChhHHHHHhc
Q 005881 21 VKFSRINDAQKLFD 34 (672)
Q Consensus 21 ~~~g~~~~a~~~~~ 34 (672)
++.|+++-...+++
T Consensus 5 ~~~~~~~~~~~ll~ 18 (89)
T PF12796_consen 5 AQNGNLEILKFLLE 18 (89)
T ss_dssp HHTTTHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 44555555555555
No 479
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=29.66 E-value=46 Score=27.07 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=23.3
Q ss_pred HcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHH
Q 005881 52 SQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSAC 86 (672)
Q Consensus 52 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 86 (672)
...|.-..|..+|+.|++.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3346667788888889888877765 56666544
No 480
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=29.65 E-value=1.2e+02 Score=24.03 Aligned_cols=43 Identities=7% Similarity=-0.101 Sum_probs=19.0
Q ss_pred HHHHHcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhcCC
Q 005881 48 ISGFSQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSACASRG 90 (672)
Q Consensus 48 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 90 (672)
+..+...+.+-.|.++++.+.+.+..++..|.-..|+.+...|
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 3444444444445555555544443344444333444443333
No 481
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=29.60 E-value=4.9e+02 Score=24.64 Aligned_cols=51 Identities=16% Similarity=0.030 Sum_probs=34.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChHHH-------HHHHHHHcCcCchHHHHHH
Q 005881 351 IAGHLASCHYGEAIELLKDMLFEGHCPNLYTY-------SNILNISSDIPAIEWGKQT 401 (672)
Q Consensus 351 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~-------~~ll~~~~~~~~~~~a~~~ 401 (672)
..-..+.+++++|+..+.+....|+..|..+. .-+...|.+.|+.....+.
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~ 67 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDT 67 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 34456778899999999999988887776543 3455566666665544443
No 482
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=29.54 E-value=6.7e+02 Score=28.57 Aligned_cols=56 Identities=13% Similarity=0.050 Sum_probs=28.8
Q ss_pred HHHHHHhhccCCchhHHHHHHHHHHhCCCCchH--HHHHHHHHHHccCChHHHHHHHhhCCC
Q 005881 282 SYVLGAFADVKETIGGRQLHSLIIKMGFSSFTF--VANTVLDFYSKCELLEESLKTFDEMDE 341 (672)
Q Consensus 282 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~ 341 (672)
...+...+..|+.+.++.+ .+.|..++.. --.+-+...+..|+.+-+.-+++.-.+
T Consensus 623 ~~~L~~Aa~~g~~~~v~~L----l~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAd 680 (823)
T PLN03192 623 GDLLCTAAKRNDLTAMKEL----LKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGAD 680 (823)
T ss_pred chHHHHHHHhCCHHHHHHH----HHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCC
Confidence 3455556666666544444 3445444322 112234445566777777766665443
No 483
>PF13934 ELYS: Nuclear pore complex assembly
Probab=29.28 E-value=4.5e+02 Score=24.08 Aligned_cols=113 Identities=16% Similarity=0.195 Sum_probs=59.6
Q ss_pred cCCHHHHHHHHhhCCCCCch-h-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHH
Q 005881 427 CGRLNDARKVFDHLSSKNLV-S-WNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFN 504 (672)
Q Consensus 427 ~g~~~~A~~~~~~~~~~~~~-~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 504 (672)
.+++++|.+.+..- ... + -.-++.++...|+.+.|+.+++.+.-..-.+ .....++.+ ...+.+.+|..+-+
T Consensus 91 ~~~~~~A~~~L~~p---s~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~--~~~~~~~~~-La~~~v~EAf~~~R 164 (226)
T PF13934_consen 91 HGDFEEALELLSHP---SLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSP--EALTLYFVA-LANGLVTEAFSFQR 164 (226)
T ss_pred hHhHHHHHHHhCCC---CCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCH--HHHHHHHHH-HHcCCHHHHHHHHH
Confidence 45666777666433 221 1 1236777777888888888877754321111 222222333 44578888887765
Q ss_pred HhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhCCCCCCHH
Q 005881 505 SMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSSPIEPNKV 549 (672)
Q Consensus 505 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~ 549 (672)
.... .-....+..++..+.....-....+.+-.+|+.+...
T Consensus 165 ~~~~----~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE 205 (226)
T PF13934_consen 165 SYPD----ELRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEEE 205 (226)
T ss_pred hCch----hhhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHH
Confidence 4432 1113455566665554333233344445566655444
No 484
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=29.05 E-value=4e+02 Score=25.93 Aligned_cols=117 Identities=10% Similarity=0.077 Sum_probs=67.1
Q ss_pred HHHHHHHHhhCC---CCCchhHHHHHHHHHh------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHHH
Q 005881 430 LNDARKVFDHLS---SKNLVSWNTMLVGYAQ------HGLGREALEIYSMMQENKIKPNDN-TFIGVLSACVHIGLVEEG 499 (672)
Q Consensus 430 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~------~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a 499 (672)
++++..++++.. .|.+......|.++-. .-+|.....+|+-+.. +.|+.+ +.|..+ +..+..-++.+
T Consensus 272 I~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAV-Ala~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAV-ALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHH-HHHHhhhHHhH
Confidence 344444444433 4566666665555432 2367777777777777 456664 444332 34444456677
Q ss_pred HHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHh-CCCCCCHH
Q 005881 500 WHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKS-SPIEPNKV 549 (672)
Q Consensus 500 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~ 549 (672)
+.+.+.+..+..+.--...+..-.+.+.+.|+.++|..-|++ +.+.++..
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAA 399 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChH
Confidence 777766653322222223344557788899999999998876 33344433
No 485
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.75 E-value=5.9e+02 Score=27.31 Aligned_cols=84 Identities=10% Similarity=0.014 Sum_probs=57.9
Q ss_pred ccCChHHHHHHHHh-CCCCC-C------HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChH
Q 005881 528 CRGQTRRAYEFIKS-SPIEP-N------KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWD 599 (672)
Q Consensus 528 ~~g~~~~A~~~~~~-~~~~p-~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 599 (672)
+..++..+.++|+. +..-| | ......+.-.|....+++.|.++++++-+.+|.++-.-.....+....|+-+
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se 445 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSE 445 (872)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchH
Confidence 45566777777653 22111 1 1123444444667788899999999999999888877777788888888888
Q ss_pred HHHHHHHHHhhC
Q 005881 600 ETAKVRKIMKEK 611 (672)
Q Consensus 600 ~a~~~~~~~~~~ 611 (672)
+|..........
T Consensus 446 ~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 446 EALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHhh
Confidence 888888776543
No 486
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=28.50 E-value=5e+02 Score=24.37 Aligned_cols=72 Identities=13% Similarity=0.076 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHhcCCHH-HHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCCc
Q 005881 547 NKVVWRCLLSGCKTHKDLV-LGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKSLKKDTG 618 (672)
Q Consensus 547 ~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 618 (672)
|-.+|..--......|+.. .-+...+.++..+..|-.+|...-+++...+.|++-...-..+.+.++..+.+
T Consensus 111 NYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSA 183 (318)
T KOG0530|consen 111 NYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSA 183 (318)
T ss_pred chhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccch
Confidence 6667766555555667777 77888899999999999999999999999999999999999999988887765
No 487
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=28.20 E-value=5.5e+02 Score=24.72 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=28.2
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHh
Q 005881 364 IELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVK 407 (672)
Q Consensus 364 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 407 (672)
.++++.|...++.|.-..|.-+.-.+++.=.+.....+|+.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 35666666667777766666665556666666666666666654
No 488
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=28.02 E-value=1.6e+02 Score=20.62 Aligned_cols=49 Identities=8% Similarity=-0.038 Sum_probs=28.9
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 005881 443 KNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVH 492 (672)
Q Consensus 443 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 492 (672)
+....++.++..++...-.++++..+.++...|. .+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4445566666666666667777777777777763 444555544444443
No 489
>PRK13342 recombination factor protein RarA; Reviewed
Probab=27.99 E-value=6.6e+02 Score=25.62 Aligned_cols=116 Identities=12% Similarity=0.098 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhC---CC-CCChhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHH
Q 005881 159 VHGLKIFLLSRKS---GV-AISEFSCASVLGACAVLGNLKVGMQIHSLVFKCALEFDKFVAMGLINLYAKCEKLDLASRV 234 (672)
Q Consensus 159 ~~a~~~~~~m~~~---g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 234 (672)
++...++...... |+ ..+......++..+ .|+...+..+++.+...+...+. +....+
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~----------------~~v~~~ 215 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITL----------------ELLEEA 215 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCH----------------HHHHHH
Confidence 4444555444321 33 44444444444433 57777777777665443211122 122222
Q ss_pred HhcC---CCCCcchHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccC
Q 005881 235 FSNI---QLPDLTAWSALIGGYAQ---LGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVK 292 (672)
Q Consensus 235 ~~~~---~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 292 (672)
+... ...+......+++++.+ .++.+.|+..+..|.+.|..|....-..+..++-..|
T Consensus 216 ~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 216 LQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 2211 11222334455555554 4788999999999999888777655554444443333
No 490
>PRK14700 recombination factor protein RarA; Provisional
Probab=27.97 E-value=5.2e+02 Score=24.86 Aligned_cols=48 Identities=21% Similarity=0.126 Sum_probs=37.0
Q ss_pred HHHHHHHHH---hcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCc
Q 005881 347 WNALIAGHL---ASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPA 394 (672)
Q Consensus 347 ~~~li~~~~---~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 394 (672)
+-.+|+++. +..+++.|+-.+.+|++.|-.|....-..++-++...|.
T Consensus 126 HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGl 176 (300)
T PRK14700 126 FYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGN 176 (300)
T ss_pred hHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 344566665 457899999999999999988888777777777766663
No 491
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=27.74 E-value=3.2e+02 Score=28.30 Aligned_cols=21 Identities=10% Similarity=0.107 Sum_probs=10.5
Q ss_pred HHHHHHHhhccCcHHHHHHHH
Q 005881 483 FIGVLSACVHIGLVEEGWHYF 503 (672)
Q Consensus 483 ~~~ll~~~~~~g~~~~a~~~~ 503 (672)
|-..+.-+...+++++|.++.
T Consensus 576 y~~iL~e~~sssKWeqavRLC 596 (737)
T KOG1524|consen 576 YPEILHEYLSSSKWEQAVRLC 596 (737)
T ss_pred cHHHHHHHhccchHHHHHHHH
Confidence 444444445555555555554
No 492
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=27.63 E-value=1.1e+02 Score=30.68 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 005881 566 LGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIM 608 (672)
Q Consensus 566 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 608 (672)
+|..+++.++...|.|...-..++.+|...|-.+.|.+.+..+
T Consensus 201 ~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 201 QAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
No 493
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=27.40 E-value=3.4e+02 Score=22.06 Aligned_cols=40 Identities=10% Similarity=0.009 Sum_probs=30.1
Q ss_pred HHHHHHHHhc--CCCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 005881 567 GRYAAEKILS--TDPEDTSAHIMLSNVYAEANMWDETAKVRK 606 (672)
Q Consensus 567 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 606 (672)
...+|..+.. +.-..+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556666654 445567778888899999999999998886
No 494
>PRK09462 fur ferric uptake regulator; Provisional
Probab=27.38 E-value=3.4e+02 Score=22.73 Aligned_cols=61 Identities=11% Similarity=0.166 Sum_probs=39.5
Q ss_pred HhHhCCCCCCcccHHHHHHHHhcC-CChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 005881 66 LMVCCVLEPNYYTYVGAVSACASR-GDARSGKEIHGRMYRSGLELNSHVSNCLINMYGKCGLL 127 (672)
Q Consensus 66 ~m~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 127 (672)
.+.+.|++++.. -..++..+... +..-.|.++++.+.+.+...+..|--.-++.+...|-+
T Consensus 7 ~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345566665554 33455555543 45778888998888888766766655666667766644
No 495
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=27.15 E-value=3.5e+02 Score=23.73 Aligned_cols=18 Identities=22% Similarity=0.301 Sum_probs=9.1
Q ss_pred HhhccCChHHHHHHHHhC
Q 005881 525 LFACRGQTRRAYEFIKSS 542 (672)
Q Consensus 525 ~~~~~g~~~~A~~~~~~~ 542 (672)
.+.+.|.+++|.+++++.
T Consensus 120 VCm~~g~Fk~A~eiLkr~ 137 (200)
T cd00280 120 VCMENGEFKKAEEVLKRL 137 (200)
T ss_pred HHHhcCchHHHHHHHHHH
Confidence 344555555555555543
No 496
>PHA03100 ankyrin repeat protein; Provisional
Probab=27.08 E-value=7.3e+02 Score=25.79 Aligned_cols=112 Identities=9% Similarity=0.129 Sum_probs=47.0
Q ss_pred HHhcCChHHHHHHhhccCCC---CcccHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCChhh--HHHHHHHHhccCChH
Q 005881 121 YGKCGLLSSAQFVFDASLER---NSISWVSLLSSYC-QCGEHVHGLKIFLLSRKSGVAISEFS--CASVLGACAVLGNLK 194 (672)
Q Consensus 121 ~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~ 194 (672)
.+..|..+-+.-+++..... +...++.+..+.. ..|+. ++++.+.+.|..++... -...+..++..+.
T Consensus 80 a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~----~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-- 153 (480)
T PHA03100 80 YNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSY----SIVEYLLDNGANVNIKNSDGENLLHLYLESNK-- 153 (480)
T ss_pred HHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChH----HHHHHHHHcCCCCCccCCCCCcHHHHHHHcCC--
Confidence 45556665555555543332 2233444443332 44443 34444455565543221 1233444444441
Q ss_pred HHHHHHHHHHHhcCCCcHHH--HHHHHHHhhcCCChhHHHHHHhcC
Q 005881 195 VGMQIHSLVFKCALEFDKFV--AMGLINLYAKCEKLDLASRVFSNI 238 (672)
Q Consensus 195 ~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~ 238 (672)
.-.++.+.+.+.|..++... ...-+..++..|+.+-+.-+++.-
T Consensus 154 ~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g 199 (480)
T PHA03100 154 IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNG 199 (480)
T ss_pred ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 11234444455555443221 112233344445555444444443
No 497
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.73 E-value=8.1e+02 Score=26.24 Aligned_cols=176 Identities=12% Similarity=0.041 Sum_probs=89.6
Q ss_pred hhHHHHHhccCCC-CCcchHHHHH----HH-HHcCCCchhHHHHHHHhHh-------CCCCCCcccHHHHHHHHhcCC--
Q 005881 26 INDAQKLFDEMPE-RNVISWSALI----SG-FSQIGMPEVALNYFRLMVC-------CVLEPNYYTYVGAVSACASRG-- 90 (672)
Q Consensus 26 ~~~a~~~~~~~~~-~~~~~~~~li----~~-~~~~g~~~~a~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~~~-- 90 (672)
...|...|+.... -+...-..+. .+ +....+++.|+..|+.+.+ .| ++....-+...|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 3566777766654 2333322222 23 4566789999999998876 44 3445556666666543
Q ss_pred ---ChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHh-cCChHHHHHHhhccCCC-CcccHHHHHHHHH----hcCChHHH
Q 005881 91 ---DARSGKEIHGRMYRSGLELNSHVSNCLINMYGK-CGLLSSAQFVFDASLER-NSISWVSLLSSYC----QCGEHVHG 161 (672)
Q Consensus 91 ---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~----~~g~~~~a 161 (672)
+...|..++....+.|. |+....-..+..... ..+...|.+.|...... ...+.-.+...|. ...+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 56678888888888873 344433333332222 23456777777664433 1111111111111 12345566
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhc
Q 005881 162 LKIFLLSRKSGVAISEFSCASVLGACAVLGNLKVGMQIHSLVFKCA 207 (672)
Q Consensus 162 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 207 (672)
...+.+.-+.| .|...--...+..+.. +..+.+.-.+..+...|
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 66666666555 3332222223333333 44444444444444443
No 498
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=26.59 E-value=1.7e+02 Score=22.96 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=9.9
Q ss_pred HHHHHHccCChHHHHHHHhhCC
Q 005881 319 VLDFYSKCELLEESLKTFDEMD 340 (672)
Q Consensus 319 li~~~~~~~~~~~a~~~~~~~~ 340 (672)
++.-|...++.++|...+.++.
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHhcCCCHHHHHHHHHHhC
Confidence 3344444455555555554443
No 499
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=26.59 E-value=2.7e+02 Score=20.66 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHH
Q 005881 398 GKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREA 464 (672)
Q Consensus 398 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 464 (672)
...++..+.+.| +.+....-...+...+.+.|.++++.+...+..+|..+..++...|...-|
T Consensus 18 ~~~v~~~L~~~~----Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRG----VFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcC----CCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
No 500
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=26.26 E-value=2.8e+02 Score=20.70 Aligned_cols=41 Identities=17% Similarity=0.121 Sum_probs=26.1
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhC
Q 005881 299 QLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEM 339 (672)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 339 (672)
++|+.....|+..|+.+|..+++...-+=..+....+++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 66777777777777777777776665554555555555544
Done!