Query 005881
Match_columns 672
No_of_seqs 707 out of 3790
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 09:58:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005881.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005881hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1E-40 3.4E-45 359.1 39.1 480 121-611 63-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 8.2E-41 2.8E-45 359.8 37.9 500 19-594 62-596 (597)
3 4g26_A Pentatricopeptide repea 100.0 6.5E-28 2.2E-32 247.2 20.8 216 58-326 7-223 (501)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-24 3.6E-29 220.5 39.9 371 185-597 7-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.5E-27 5.3E-32 244.5 18.9 184 42-225 27-223 (501)
6 1w3b_A UDP-N-acetylglucosamine 99.9 2.4E-24 8.3E-29 217.8 39.2 350 250-610 6-367 (388)
7 2gw1_A Mitochondrial precursor 99.9 2.7E-22 9.4E-27 211.1 33.7 428 144-611 8-478 (514)
8 2gw1_A Mitochondrial precursor 99.9 1.8E-21 6.3E-26 204.8 32.6 259 326-588 202-489 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 2.4E-21 8.4E-26 200.1 31.2 321 244-607 27-405 (450)
10 3fp2_A TPR repeat-containing p 99.9 1.6E-20 5.6E-25 198.7 34.0 418 144-610 27-490 (537)
11 3fp2_A TPR repeat-containing p 99.9 8.5E-20 2.9E-24 193.2 35.1 446 41-586 25-500 (537)
12 2y4t_A DNAJ homolog subfamily 99.9 6.7E-20 2.3E-24 189.3 30.7 306 277-612 25-359 (450)
13 1xi4_A Clathrin heavy chain; a 99.9 2.8E-16 9.7E-21 170.3 53.1 550 6-604 721-1377(1630)
14 3ieg_A DNAJ homolog subfamily 99.8 8.3E-18 2.8E-22 167.7 32.2 302 279-610 4-334 (359)
15 3ieg_A DNAJ homolog subfamily 99.8 1.2E-17 4E-22 166.6 30.4 315 242-596 2-354 (359)
16 1xi4_A Clathrin heavy chain; a 99.8 1E-14 3.5E-19 158.4 54.4 532 13-604 988-1585(1630)
17 3hym_B Cell division cycle pro 99.8 1.8E-17 6.2E-22 163.1 27.5 286 310-598 19-321 (330)
18 1b89_A Protein (clathrin heavy 99.8 1.1E-16 3.6E-21 156.0 29.7 345 21-439 14-368 (449)
19 3hym_B Cell division cycle pro 99.8 9E-17 3.1E-21 158.1 27.5 263 342-610 20-298 (330)
20 1b89_A Protein (clathrin heavy 99.8 1.4E-17 4.8E-22 162.1 20.3 286 224-542 15-308 (449)
21 2ooe_A Cleavage stimulation fa 99.8 3E-15 1E-19 157.5 38.9 210 397-612 256-493 (530)
22 2xm6_A Protein corresponding t 99.8 3.1E-15 1E-19 155.7 37.1 351 225-594 56-452 (490)
23 3mkr_A Coatomer subunit epsilo 99.8 1.1E-16 3.9E-21 153.1 23.8 267 325-605 11-288 (291)
24 1fch_A Peroxisomal targeting s 99.8 5.5E-17 1.9E-21 162.4 22.3 279 323-608 35-356 (368)
25 2xm6_A Protein corresponding t 99.7 3.1E-14 1.1E-18 148.1 39.5 352 241-613 37-434 (490)
26 4eqf_A PEX5-related protein; a 99.7 1.3E-16 4.5E-21 159.5 18.7 259 343-607 64-352 (365)
27 2ooe_A Cleavage stimulation fa 99.7 2.3E-14 8E-19 150.6 36.8 405 141-580 12-495 (530)
28 1fch_A Peroxisomal targeting s 99.7 3.5E-16 1.2E-20 156.6 19.8 270 281-576 67-358 (368)
29 3mkr_A Coatomer subunit epsilo 99.7 7.8E-16 2.7E-20 147.3 21.0 245 351-610 6-263 (291)
30 4g1t_A Interferon-induced prot 99.7 3.4E-15 1.2E-19 154.9 27.0 361 245-622 53-470 (472)
31 4eqf_A PEX5-related protein; a 99.7 1.1E-15 3.8E-20 152.7 20.4 231 378-611 64-310 (365)
32 3cv0_A Peroxisome targeting si 99.7 1.6E-15 5.6E-20 148.9 21.0 258 346-609 23-313 (327)
33 3spa_A Mtrpol, DNA-directed RN 99.7 1.4E-17 4.9E-22 174.9 4.5 147 10-156 127-286 (1134)
34 2pl2_A Hypothetical conserved 99.6 5.2E-15 1.8E-19 135.2 17.1 193 411-608 2-211 (217)
35 3spa_A Mtrpol, DNA-directed RN 99.6 1.8E-16 6E-21 166.7 7.3 148 211-358 126-286 (1134)
36 3cv0_A Peroxisome targeting si 99.6 3.8E-14 1.3E-18 139.1 22.3 273 243-579 21-317 (327)
37 3uq3_A Heat shock protein STI1 99.6 3E-14 1E-18 134.4 20.0 216 346-610 7-235 (258)
38 4g1t_A Interferon-induced prot 99.6 2.2E-13 7.5E-18 141.3 27.2 382 175-589 49-471 (472)
39 3uq3_A Heat shock protein STI1 99.6 5.8E-14 2E-18 132.4 17.1 236 313-590 5-255 (258)
40 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.4E-13 4.7E-18 131.3 19.6 241 356-605 17-269 (275)
41 3u4t_A TPR repeat-containing p 99.6 2.4E-13 8.1E-18 129.4 20.1 238 352-596 11-269 (272)
42 3e4b_A ALGK; tetratricopeptide 99.5 1.1E-12 3.8E-17 134.0 23.5 366 189-610 15-420 (452)
43 2ho1_A Type 4 fimbrial biogene 99.5 9.5E-13 3.3E-17 123.6 20.8 197 414-612 37-239 (252)
44 3e4b_A ALGK; tetratricopeptide 99.5 1.4E-12 4.8E-17 133.3 22.2 343 249-613 9-389 (452)
45 2vq2_A PILW, putative fimbrial 99.5 1.6E-12 5.3E-17 119.6 20.2 197 413-611 7-211 (225)
46 2h6f_A Protein farnesyltransfe 99.5 1.1E-12 3.7E-17 129.8 19.7 241 346-594 99-365 (382)
47 1ouv_A Conserved hypothetical 99.5 7.5E-12 2.6E-16 119.0 24.6 224 343-613 5-253 (273)
48 2q7f_A YRRB protein; TPR, prot 99.5 7E-13 2.4E-17 123.7 16.1 196 413-611 22-222 (243)
49 3vtx_A MAMA; tetratricopeptide 99.5 2.8E-12 9.7E-17 113.7 19.0 164 444-612 4-171 (184)
50 2h6f_A Protein farnesyltransfe 99.5 2.3E-12 7.9E-17 127.3 20.0 222 380-608 98-344 (382)
51 1ouv_A Conserved hypothetical 99.5 9.6E-12 3.3E-16 118.3 23.5 225 312-581 5-255 (273)
52 4abn_A Tetratricopeptide repea 99.5 4.1E-13 1.4E-17 138.2 14.2 190 413-607 101-317 (474)
53 3u4t_A TPR repeat-containing p 99.4 4E-12 1.4E-16 120.9 19.4 226 382-612 6-251 (272)
54 2q7f_A YRRB protein; TPR, prot 99.4 1.7E-12 5.8E-17 121.0 16.2 214 344-596 23-241 (243)
55 4a1s_A PINS, partner of inscut 99.4 7.1E-13 2.4E-17 134.6 14.4 196 415-610 127-371 (411)
56 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.6E-12 5.5E-17 123.8 16.1 219 389-612 15-245 (275)
57 2ho1_A Type 4 fimbrial biogene 99.4 1.5E-11 5.1E-16 115.4 22.4 204 344-586 37-247 (252)
58 2pl2_A Hypothetical conserved 99.4 4.8E-12 1.7E-16 115.4 18.0 108 428-540 98-209 (217)
59 3ro2_A PINS homolog, G-protein 99.4 2.1E-12 7.3E-17 126.9 15.6 258 352-611 13-332 (338)
60 3sf4_A G-protein-signaling mod 99.4 4.5E-12 1.5E-16 128.4 18.3 194 416-609 89-334 (406)
61 2vq2_A PILW, putative fimbrial 99.4 4.5E-11 1.5E-15 109.7 22.0 206 344-588 8-222 (225)
62 4gyw_A UDP-N-acetylglucosamine 99.4 2.4E-12 8.4E-17 137.5 15.2 161 445-610 9-173 (723)
63 3sf4_A G-protein-signaling mod 99.4 2.8E-12 9.7E-17 129.9 13.9 154 446-599 188-364 (406)
64 3vtx_A MAMA; tetratricopeptide 99.4 6.5E-12 2.2E-16 111.3 14.4 166 413-582 4-175 (184)
65 4e6h_A MRNA 3'-END-processing 99.4 3.5E-09 1.2E-13 111.8 37.0 415 141-583 65-576 (679)
66 4e6h_A MRNA 3'-END-processing 99.4 4.3E-09 1.5E-13 111.1 36.9 213 312-527 342-585 (679)
67 4abn_A Tetratricopeptide repea 99.3 3.1E-11 1.1E-15 124.2 17.6 178 430-612 84-288 (474)
68 4i17_A Hypothetical protein; T 99.3 3.9E-11 1.3E-15 110.5 16.4 162 446-610 8-208 (228)
69 2ond_A Cleavage stimulation fa 99.3 1.2E-10 4.1E-15 112.6 20.1 176 431-611 81-270 (308)
70 3ulq_A Response regulator aspa 99.3 5.3E-11 1.8E-15 119.4 18.0 163 447-610 186-367 (383)
71 2ond_A Cleavage stimulation fa 99.3 4.6E-10 1.6E-14 108.5 23.8 219 361-584 33-277 (308)
72 4a1s_A PINS, partner of inscut 99.3 2.6E-11 8.8E-16 123.1 15.3 133 447-579 225-374 (411)
73 3ulq_A Response regulator aspa 99.3 3.3E-11 1.1E-15 120.9 15.9 292 288-579 22-370 (383)
74 4i17_A Hypothetical protein; T 99.3 1.7E-10 5.8E-15 106.2 18.2 204 378-593 6-225 (228)
75 3as5_A MAMA; tetratricopeptide 99.3 1.4E-10 4.8E-15 102.6 17.1 160 449-611 12-173 (186)
76 3ro2_A PINS homolog, G-protein 99.3 4.4E-11 1.5E-15 117.5 15.0 134 447-580 185-335 (338)
77 3nf1_A KLC 1, kinesin light ch 99.3 6.7E-12 2.3E-16 121.9 8.8 237 344-610 27-306 (311)
78 3nf1_A KLC 1, kinesin light ch 99.2 2.3E-11 8E-16 118.0 10.6 246 311-580 25-310 (311)
79 1hz4_A MALT regulatory protein 99.2 3.5E-09 1.2E-13 105.6 26.6 194 417-610 96-321 (373)
80 3q15_A PSP28, response regulat 99.2 5.8E-10 2E-14 111.5 19.3 220 390-610 112-364 (378)
81 3as5_A MAMA; tetratricopeptide 99.2 1.1E-09 3.9E-14 96.7 18.4 167 415-584 9-180 (186)
82 1qqe_A Vesicular transport pro 99.2 3.6E-10 1.2E-14 108.3 14.9 188 422-609 45-267 (292)
83 3q15_A PSP28, response regulat 99.1 1.7E-08 6E-13 100.7 26.9 226 352-578 109-366 (378)
84 3qky_A Outer membrane assembly 99.1 3.7E-09 1.3E-13 99.5 19.0 202 415-657 16-247 (261)
85 4gyw_A UDP-N-acetylglucosamine 99.1 3.2E-10 1.1E-14 121.3 12.2 162 413-579 8-176 (723)
86 4ga2_A E3 SUMO-protein ligase 99.1 8.7E-11 3E-15 99.7 5.5 138 455-597 7-149 (150)
87 3edt_B KLC 2, kinesin light ch 99.1 4.8E-10 1.6E-14 106.9 11.3 197 414-610 43-280 (283)
88 1qqe_A Vesicular transport pro 99.1 2.2E-09 7.4E-14 102.8 15.7 212 328-586 32-278 (292)
89 4ga2_A E3 SUMO-protein ligase 99.0 3.8E-10 1.3E-14 95.7 8.2 122 486-610 3-128 (150)
90 2yhc_A BAMD, UPF0169 lipoprote 99.0 1E-08 3.5E-13 93.8 17.7 179 416-614 6-216 (225)
91 3mv2_B Coatomer subunit epsilo 99.0 2.4E-08 8.1E-13 93.3 20.0 173 433-610 85-281 (310)
92 2pzi_A Probable serine/threoni 99.0 6.5E-10 2.2E-14 119.7 10.6 167 425-597 402-583 (681)
93 1hz4_A MALT regulatory protein 99.0 1.1E-07 3.7E-12 94.7 25.9 121 252-372 23-163 (373)
94 3qou_A Protein YBBN; thioredox 99.0 4.7E-09 1.6E-13 100.0 14.8 175 430-609 102-282 (287)
95 3qky_A Outer membrane assembly 99.0 6.8E-09 2.3E-13 97.6 15.2 202 378-600 14-250 (261)
96 3mv2_B Coatomer subunit epsilo 99.0 4.2E-08 1.4E-12 91.6 19.5 240 323-584 23-289 (310)
97 2fo7_A Synthetic consensus TPR 99.0 2.1E-08 7.2E-13 83.0 16.1 129 448-611 4-132 (136)
98 3rjv_A Putative SEL1 repeat pr 99.0 5.8E-08 2E-12 87.7 19.8 172 433-613 5-199 (212)
99 3edt_B KLC 2, kinesin light ch 99.0 2E-08 6.7E-13 95.6 17.1 165 414-578 85-282 (283)
100 3gyz_A Chaperone protein IPGC; 98.9 3.5E-09 1.2E-13 89.1 10.0 101 511-611 30-133 (151)
101 2vsy_A XCC0866; transferase, g 98.9 1.1E-08 3.8E-13 108.2 15.1 158 427-589 2-169 (568)
102 2r5s_A Uncharacterized protein 98.9 1.6E-08 5.5E-13 88.4 12.8 155 451-610 12-172 (176)
103 3urz_A Uncharacterized protein 98.9 1.6E-08 5.3E-13 91.2 12.8 151 424-580 14-189 (208)
104 4gco_A Protein STI-1; structur 98.9 1.7E-08 5.7E-13 82.4 11.7 94 517-610 14-109 (126)
105 2vgx_A Chaperone SYCD; alterna 98.9 6.8E-09 2.3E-13 87.6 9.3 101 511-611 15-118 (148)
106 4gco_A Protein STI-1; structur 98.9 8.4E-09 2.9E-13 84.1 9.5 114 476-592 8-125 (126)
107 2ifu_A Gamma-SNAP; membrane fu 98.9 3.5E-08 1.2E-12 95.1 15.4 219 357-604 4-254 (307)
108 3urz_A Uncharacterized protein 98.8 2.4E-08 8.1E-13 90.0 11.7 158 448-611 7-186 (208)
109 2pzi_A Probable serine/threoni 98.8 1.1E-07 3.8E-12 102.3 18.1 191 390-586 402-611 (681)
110 2vsy_A XCC0866; transferase, g 98.8 6.8E-08 2.3E-12 102.2 16.0 147 459-610 3-156 (568)
111 2ifu_A Gamma-SNAP; membrane fu 98.8 2.9E-08 9.8E-13 95.7 11.7 197 391-609 3-222 (307)
112 1hh8_A P67PHOX, NCF-2, neutrop 98.8 9.3E-08 3.2E-12 86.6 14.4 126 448-579 9-152 (213)
113 3qou_A Protein YBBN; thioredox 98.8 7.6E-08 2.6E-12 91.6 14.0 134 477-613 114-250 (287)
114 3u3w_A Transcriptional activat 98.8 8.1E-07 2.8E-11 84.9 21.1 161 450-610 80-265 (293)
115 2fo7_A Synthetic consensus TPR 98.8 2.6E-07 8.8E-12 76.2 15.5 121 416-539 3-126 (136)
116 2xcb_A PCRH, regulatory protei 98.8 4.6E-08 1.6E-12 81.9 10.7 100 511-610 12-114 (142)
117 2uy1_A Cleavage stimulation fa 98.8 8.4E-06 2.9E-10 83.5 29.3 202 361-575 196-411 (493)
118 3dra_A Protein farnesyltransfe 98.7 1E-06 3.5E-11 83.3 19.7 178 429-610 84-286 (306)
119 2qfc_A PLCR protein; TPR, HTH, 98.7 2.6E-07 9E-12 88.3 16.1 163 447-609 77-264 (293)
120 2r5s_A Uncharacterized protein 98.7 9.2E-08 3.2E-12 83.5 11.6 155 417-576 9-172 (176)
121 2yhc_A BAMD, UPF0169 lipoprote 98.7 2.9E-07 9.9E-12 84.1 14.8 184 380-584 5-220 (225)
122 2c2l_A CHIP, carboxy terminus 98.7 3E-08 1E-12 94.0 8.2 190 414-611 4-199 (281)
123 3upv_A Heat shock protein STI1 98.6 2.4E-07 8.1E-12 75.6 11.2 95 516-610 4-100 (126)
124 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.2E-06 4.1E-11 79.1 17.1 150 418-579 10-174 (213)
125 1p5q_A FKBP52, FK506-binding p 98.6 1.1E-07 3.8E-12 92.7 10.8 94 516-609 196-292 (336)
126 2uy1_A Cleavage stimulation fa 98.6 2.5E-05 8.5E-10 80.0 28.5 101 53-171 6-118 (493)
127 4f3v_A ESX-1 secretion system 98.6 6.2E-07 2.1E-11 82.6 14.8 181 426-611 18-237 (282)
128 2lni_A Stress-induced-phosphop 98.6 2.7E-07 9.3E-12 76.0 11.4 113 482-597 18-133 (133)
129 1a17_A Serine/threonine protei 98.6 4.3E-07 1.5E-11 78.2 13.0 126 482-610 15-145 (166)
130 3rjv_A Putative SEL1 repeat pr 98.6 9.2E-07 3.2E-11 79.7 15.6 172 398-579 5-199 (212)
131 3dra_A Protein farnesyltransfe 98.6 1.6E-05 5.5E-10 75.1 24.1 224 360-590 49-301 (306)
132 2e2e_A Formate-dependent nitri 98.6 1.4E-07 4.9E-12 82.4 9.1 119 491-611 21-144 (177)
133 3gyz_A Chaperone protein IPGC; 98.6 1.8E-07 6E-12 78.6 9.0 103 476-581 31-137 (151)
134 2vgx_A Chaperone SYCD; alterna 98.6 6.3E-08 2.1E-12 81.6 6.3 115 468-587 10-128 (148)
135 1hxi_A PEX5, peroxisome target 98.6 1.5E-07 5.1E-12 76.0 8.0 95 518-612 19-115 (121)
136 2vyi_A SGTA protein; chaperone 98.6 5.2E-07 1.8E-11 73.9 11.4 116 481-598 13-130 (131)
137 1na0_A Designed protein CTPR3; 98.5 1E-06 3.6E-11 71.3 12.6 114 481-596 10-125 (125)
138 3u3w_A Transcriptional activat 98.5 1.7E-05 5.8E-10 75.6 21.4 158 420-577 81-266 (293)
139 3gw4_A Uncharacterized protein 98.5 1.9E-06 6.6E-11 77.0 14.0 61 550-610 109-175 (203)
140 3sz7_A HSC70 cochaperone (SGT) 98.5 5.9E-07 2E-11 77.3 10.0 106 481-589 12-120 (164)
141 2fbn_A 70 kDa peptidylprolyl i 98.5 5.9E-08 2E-12 86.7 3.6 169 421-610 11-185 (198)
142 2e2e_A Formate-dependent nitri 98.5 1.3E-06 4.3E-11 76.3 12.0 128 456-586 21-153 (177)
143 3q49_B STIP1 homology and U bo 98.5 9.9E-07 3.4E-11 73.1 10.7 97 515-611 8-106 (137)
144 4f3v_A ESX-1 secretion system 98.5 3E-07 1E-11 84.7 7.9 135 449-588 106-247 (282)
145 4gcn_A Protein STI-1; structur 98.5 5.6E-07 1.9E-11 73.4 8.7 93 518-610 10-111 (127)
146 2kck_A TPR repeat; tetratricop 98.5 1E-06 3.5E-11 69.7 10.1 98 516-613 6-108 (112)
147 2xcb_A PCRH, regulatory protei 98.4 5.7E-07 1.9E-11 75.1 8.4 107 482-591 20-129 (142)
148 2qfc_A PLCR protein; TPR, HTH, 98.4 8.8E-06 3E-10 77.6 17.9 160 418-577 79-266 (293)
149 3upv_A Heat shock protein STI1 98.4 8.1E-07 2.8E-11 72.4 9.0 109 482-593 6-123 (126)
150 2lni_A Stress-induced-phosphop 98.4 2.1E-06 7.2E-11 70.5 11.3 97 515-611 15-113 (133)
151 3sz7_A HSC70 cochaperone (SGT) 98.4 1.2E-06 4.3E-11 75.2 10.0 95 516-610 11-107 (164)
152 1elw_A TPR1-domain of HOP; HOP 98.4 4E-06 1.4E-10 67.0 12.4 107 483-592 7-116 (118)
153 2dba_A Smooth muscle cell asso 98.4 2.8E-06 9.7E-11 71.2 11.9 108 483-593 31-144 (148)
154 2hr2_A Hypothetical protein; a 98.4 1.1E-06 3.6E-11 72.9 8.6 62 549-610 58-130 (159)
155 2dba_A Smooth muscle cell asso 98.4 3.2E-06 1.1E-10 70.9 11.8 96 515-610 27-127 (148)
156 3rkv_A Putative peptidylprolyl 98.3 2.2E-06 7.6E-11 73.4 10.2 63 548-610 63-125 (162)
157 1elw_A TPR1-domain of HOP; HOP 98.3 3.8E-06 1.3E-10 67.1 11.1 97 515-611 3-101 (118)
158 3gw4_A Uncharacterized protein 98.3 1.2E-05 4E-10 71.7 15.1 152 427-578 5-177 (203)
159 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 4.5E-06 1.5E-10 85.1 13.5 143 446-610 269-414 (457)
160 1wao_1 Serine/threonine protei 98.3 1.1E-06 3.8E-11 89.9 8.8 117 488-607 14-135 (477)
161 1na0_A Designed protein CTPR3; 98.3 4.7E-06 1.6E-10 67.3 10.8 96 516-611 9-106 (125)
162 1wao_1 Serine/threonine protei 98.3 5.6E-06 1.9E-10 84.7 13.5 82 424-507 16-101 (477)
163 2vyi_A SGTA protein; chaperone 98.3 1.2E-05 4E-10 65.5 13.2 96 515-610 11-108 (131)
164 3q7a_A Farnesyltransferase alp 98.3 4.1E-05 1.4E-09 73.0 18.2 178 429-610 104-330 (349)
165 1a17_A Serine/threonine protei 98.3 8.9E-06 3E-10 69.7 12.8 126 447-575 15-144 (166)
166 3q49_B STIP1 homology and U bo 98.3 3E-06 1E-10 70.1 8.9 111 479-592 8-126 (137)
167 4gcn_A Protein STI-1; structur 98.3 2E-06 6.8E-11 70.0 7.5 103 447-579 10-114 (127)
168 1p5q_A FKBP52, FK506-binding p 98.2 6.3E-06 2.1E-10 80.2 11.7 65 548-612 196-260 (336)
169 2if4_A ATFKBP42; FKBP-like, al 98.2 2E-06 7E-11 83.7 8.1 147 446-612 180-329 (338)
170 1hxi_A PEX5, peroxisome target 98.2 2.8E-06 9.5E-11 68.4 7.6 95 485-582 22-119 (121)
171 2xev_A YBGF; tetratricopeptide 98.2 3.9E-06 1.3E-10 68.5 8.6 89 522-610 8-104 (129)
172 1ihg_A Cyclophilin 40; ppiase 98.2 5.3E-06 1.8E-10 81.7 10.8 136 447-604 225-363 (370)
173 3k9i_A BH0479 protein; putativ 98.2 1.5E-06 5E-11 69.7 5.1 82 529-610 3-89 (117)
174 2c2l_A CHIP, carboxy terminus 98.2 9.8E-06 3.3E-10 76.6 11.3 109 479-590 3-114 (281)
175 2fbn_A 70 kDa peptidylprolyl i 98.2 2.1E-05 7.2E-10 69.9 12.6 62 549-610 89-150 (198)
176 2hr2_A Hypothetical protein; a 98.1 3E-06 1E-10 70.2 6.2 73 518-590 59-144 (159)
177 3q7a_A Farnesyltransferase alp 98.1 0.00064 2.2E-08 64.9 23.0 227 356-589 66-344 (349)
178 4b4t_Q 26S proteasome regulato 98.1 2.4E-05 8.1E-10 79.5 14.2 187 423-609 13-243 (434)
179 2xev_A YBGF; tetratricopeptide 98.1 1.6E-05 5.4E-10 64.8 10.2 105 488-592 10-120 (129)
180 1dce_A Protein (RAB geranylger 98.1 5E-05 1.7E-09 79.1 16.1 170 427-600 42-244 (567)
181 2kck_A TPR repeat; tetratricop 98.1 1.7E-05 5.8E-10 62.5 10.0 98 483-582 9-111 (112)
182 3rkv_A Putative peptidylprolyl 98.1 8.4E-06 2.9E-10 69.7 8.5 78 516-593 63-143 (162)
183 1elr_A TPR2A-domain of HOP; HO 98.1 1E-05 3.6E-10 65.9 8.5 115 447-594 6-124 (131)
184 3dss_A Geranylgeranyl transfer 98.1 0.00022 7.4E-09 67.8 18.5 177 430-610 90-303 (331)
185 3ro3_A PINS homolog, G-protein 98.1 1.2E-05 4.3E-10 68.4 9.3 61 550-610 91-157 (164)
186 3n71_A Histone lysine methyltr 98.1 2.1E-05 7.3E-10 79.8 12.2 124 490-613 319-466 (490)
187 2l6j_A TPR repeat-containing p 98.1 1.5E-06 5.1E-11 68.8 2.8 93 515-607 3-103 (111)
188 1elr_A TPR2A-domain of HOP; HO 98.0 1.4E-05 4.7E-10 65.2 8.5 94 517-610 5-107 (131)
189 2if4_A ATFKBP42; FKBP-like, al 98.0 8.3E-06 2.8E-10 79.4 8.2 151 415-583 180-334 (338)
190 3dss_A Geranylgeranyl transfer 98.0 0.00044 1.5E-08 65.7 19.5 192 395-592 90-319 (331)
191 3k9i_A BH0479 protein; putativ 98.0 3.3E-06 1.1E-10 67.6 4.4 93 493-585 3-98 (117)
192 3ma5_A Tetratricopeptide repea 98.0 2.2E-05 7.5E-10 60.5 8.6 64 547-610 6-69 (100)
193 1ihg_A Cyclophilin 40; ppiase 98.0 4.1E-05 1.4E-09 75.3 12.1 111 481-610 224-335 (370)
194 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 2.9E-05 9.9E-10 79.1 10.7 65 548-612 317-381 (457)
195 3ro3_A PINS homolog, G-protein 98.0 3.2E-05 1.1E-09 65.7 9.5 133 447-579 11-160 (164)
196 4b4t_Q 26S proteasome regulato 97.9 0.00015 5E-09 73.5 15.8 159 452-610 11-203 (434)
197 2kat_A Uncharacterized protein 97.9 2.5E-05 8.5E-10 62.1 7.8 76 535-610 4-81 (115)
198 1na3_A Designed protein CTPR2; 97.9 3.7E-05 1.3E-09 57.9 7.7 81 516-596 9-91 (91)
199 1zu2_A Mitochondrial import re 97.9 5.6E-06 1.9E-10 68.4 2.8 96 492-612 14-121 (158)
200 3bee_A Putative YFRE protein; 97.8 9E-05 3.1E-09 55.7 8.6 68 546-613 4-74 (93)
201 2l6j_A TPR repeat-containing p 97.7 9.3E-05 3.2E-09 58.1 8.1 66 546-611 2-67 (111)
202 1zu2_A Mitochondrial import re 97.7 1.9E-05 6.6E-10 65.2 3.9 103 455-583 12-126 (158)
203 3n71_A Histone lysine methyltr 97.7 0.00013 4.4E-09 74.0 9.9 115 524-656 317-449 (490)
204 1dce_A Protein (RAB geranylger 97.7 0.00042 1.4E-08 72.1 14.0 151 457-612 40-222 (567)
205 1klx_A Cysteine rich protein B 97.7 0.0005 1.7E-08 56.5 11.7 89 522-612 31-127 (138)
206 3lvg_A Clathrin heavy chain 1; 97.7 0.00012 3.9E-09 71.0 8.4 432 9-502 53-534 (624)
207 1na3_A Designed protein CTPR2; 97.5 0.00025 8.7E-09 53.1 7.5 64 547-610 8-71 (91)
208 1klx_A Cysteine rich protein B 97.5 0.0015 5.3E-08 53.5 12.4 112 459-579 9-128 (138)
209 3qwp_A SET and MYND domain-con 97.5 0.00044 1.5E-08 69.0 10.4 115 524-656 295-427 (429)
210 2kat_A Uncharacterized protein 97.4 0.00035 1.2E-08 55.2 7.4 79 499-580 4-85 (115)
211 3lvg_A Clathrin heavy chain 1; 97.4 1.7E-05 5.9E-10 76.6 -1.3 262 40-365 53-325 (624)
212 2kc7_A BFR218_protein; tetratr 97.4 0.00081 2.8E-08 51.3 8.5 53 558-610 10-63 (99)
213 3qww_A SET and MYND domain-con 97.3 0.00035 1.2E-08 69.6 7.8 82 550-649 342-431 (433)
214 3ly7_A Transcriptional activat 97.2 0.0068 2.3E-07 57.8 14.7 143 442-612 191-340 (372)
215 3ma5_A Tetratricopeptide repea 97.1 0.0015 5.1E-08 50.0 7.8 63 444-508 6-69 (100)
216 3ly7_A Transcriptional activat 97.1 0.0022 7.6E-08 61.0 10.2 111 477-612 191-307 (372)
217 3qww_A SET and MYND domain-con 97.1 0.003 1E-07 62.9 11.1 94 493-586 311-425 (433)
218 1pc2_A Mitochondria fission pr 97.1 0.0024 8.2E-08 52.1 8.4 63 547-609 31-98 (152)
219 2kc7_A BFR218_protein; tetratr 97.0 0.0022 7.6E-08 48.7 7.3 79 522-608 6-87 (99)
220 3qwp_A SET and MYND domain-con 96.9 0.0057 1.9E-07 61.0 11.6 98 490-587 297-415 (429)
221 3u64_A Protein TP_0956; tetrat 96.9 0.003 1E-07 57.5 8.2 86 533-618 180-276 (301)
222 1wy6_A Hypothetical protein ST 96.8 0.12 4.1E-06 40.4 15.3 141 456-615 18-158 (172)
223 2v5f_A Prolyl 4-hydroxylase su 96.5 0.013 4.4E-07 45.0 8.8 74 516-589 5-87 (104)
224 3bee_A Putative YFRE protein; 96.4 0.023 7.9E-07 42.4 9.1 67 514-580 4-75 (93)
225 1pc2_A Mitochondria fission pr 96.4 0.041 1.4E-06 44.8 11.0 39 548-586 71-109 (152)
226 3mkq_B Coatomer subunit alpha; 96.2 0.15 5.1E-06 42.7 13.8 129 422-574 13-141 (177)
227 3mkq_A Coatomer beta'-subunit; 96.2 0.093 3.2E-06 57.7 16.5 102 423-542 661-762 (814)
228 3mkq_A Coatomer beta'-subunit; 96.0 0.053 1.8E-06 59.8 13.4 153 424-608 609-762 (814)
229 1nzn_A CGI-135 protein, fissio 95.8 0.059 2E-06 42.1 9.1 71 514-584 33-110 (126)
230 1qsa_A Protein (soluble lytic 95.6 2.6 8.9E-05 43.8 28.1 240 314-576 73-347 (618)
231 1y8m_A FIS1; mitochondria, unk 95.3 0.59 2E-05 37.2 13.0 91 545-661 36-130 (144)
232 4gns_B Protein CSD3, chitin bi 95.0 0.11 3.9E-06 54.9 10.9 55 555-609 344-398 (754)
233 2v5f_A Prolyl 4-hydroxylase su 95.0 0.078 2.7E-06 40.5 7.3 64 547-610 4-74 (104)
234 3u64_A Protein TP_0956; tetrat 94.6 0.57 1.9E-05 42.8 12.7 110 427-541 134-265 (301)
235 1nzn_A CGI-135 protein, fissio 94.5 0.54 1.8E-05 36.8 10.9 85 459-546 15-105 (126)
236 4h7y_A Dual specificity protei 93.4 0.19 6.6E-06 40.3 6.4 100 479-580 12-126 (161)
237 4ady_A RPN2, 26S proteasome re 93.3 11 0.00038 41.0 34.0 257 220-483 382-664 (963)
238 4h7y_A Dual specificity protei 93.1 1.1 3.9E-05 36.0 10.4 97 442-541 10-119 (161)
239 3o48_A Mitochondria fission 1 92.7 0.69 2.4E-05 36.3 8.5 44 566-609 61-105 (134)
240 3mkq_B Coatomer subunit alpha; 92.4 4.3 0.00015 33.9 16.2 128 389-543 15-142 (177)
241 3lpz_A GET4 (YOR164C homolog); 91.5 9.2 0.00031 35.8 19.0 133 12-155 37-180 (336)
242 2wpv_A GET4, UPF0363 protein Y 89.8 13 0.00043 34.6 20.1 168 316-509 36-217 (312)
243 3ffl_A Anaphase-promoting comp 89.5 1.7 5.9E-05 35.7 8.3 31 515-545 121-151 (167)
244 2wpv_A GET4, UPF0363 protein Y 88.3 16 0.00055 33.9 19.7 129 217-356 38-177 (312)
245 2ff4_A Probable regulatory pro 88.3 1.2 4E-05 43.6 8.0 67 551-617 174-245 (388)
246 1wy6_A Hypothetical protein ST 88.1 8.3 0.00028 30.4 13.4 64 145-209 94-157 (172)
247 1zbp_A Hypothetical protein VP 87.4 0.71 2.4E-05 41.4 5.1 50 560-609 9-58 (273)
248 1zbp_A Hypothetical protein VP 87.1 4.3 0.00015 36.4 9.9 52 455-507 7-58 (273)
249 4ady_A RPN2, 26S proteasome re 87.0 38 0.0013 36.9 35.5 259 287-552 383-665 (963)
250 3ffl_A Anaphase-promoting comp 86.6 4.8 0.00017 33.0 9.2 121 475-609 13-149 (167)
251 2ff4_A Probable regulatory pro 86.3 4.6 0.00016 39.4 10.8 70 449-519 175-248 (388)
252 1v54_E Cytochrome C oxidase po 85.9 4.8 0.00016 29.7 7.7 63 460-524 25-87 (109)
253 2uwj_G Type III export protein 85.6 8.8 0.0003 28.1 9.0 62 319-383 45-106 (115)
254 3o48_A Mitochondria fission 1 85.4 8.7 0.0003 30.1 9.7 39 548-586 78-116 (134)
255 1y8m_A FIS1; mitochondria, unk 85.4 12 0.00043 29.7 11.7 35 550-584 79-113 (144)
256 2p58_C Putative type III secre 85.0 9.4 0.00032 28.0 9.6 62 319-383 46-107 (116)
257 1v54_E Cytochrome C oxidase po 83.9 9.5 0.00032 28.1 8.5 64 56-120 25-88 (109)
258 3lpz_A GET4 (YOR164C homolog); 83.6 29 0.001 32.5 22.0 166 317-508 39-215 (336)
259 2qx5_A Nucleoporin NIC96; mRNA 82.2 52 0.0018 34.4 20.5 22 527-548 549-570 (661)
260 4gns_B Protein CSD3, chitin bi 82.0 15 0.00053 38.9 13.1 53 543-596 608-660 (754)
261 4fhn_B Nucleoporin NUP120; pro 81.8 23 0.00077 40.3 15.5 164 317-498 816-989 (1139)
262 1wdy_A 2-5A-dependent ribonucl 80.6 24 0.00083 31.9 13.2 47 291-337 192-240 (285)
263 1wdy_A 2-5A-dependent ribonucl 80.6 23 0.0008 32.0 13.0 118 14-139 6-130 (285)
264 2uwj_G Type III export protein 80.3 15 0.00051 26.9 9.2 86 394-484 21-106 (115)
265 2p58_C Putative type III secre 79.6 16 0.00054 26.8 9.6 59 423-484 49-107 (116)
266 3txn_A 26S proteasome regulato 79.2 47 0.0016 32.1 15.4 162 380-541 20-206 (394)
267 2y69_E Cytochrome C oxidase su 77.8 12 0.00041 29.3 7.7 60 463-524 71-130 (152)
268 4b4t_P 26S proteasome regulato 76.5 62 0.0021 32.0 22.2 94 448-541 140-243 (445)
269 3esl_A Checkpoint serine/threo 76.4 26 0.00088 29.9 10.3 53 561-613 92-146 (202)
270 1k1a_A B-cell lymphoma 3-encod 75.5 20 0.00069 31.5 10.6 28 48-75 13-40 (241)
271 2y69_E Cytochrome C oxidase su 74.4 24 0.00081 27.7 8.5 60 59-119 71-130 (152)
272 4b4t_P 26S proteasome regulato 74.1 72 0.0025 31.5 24.8 149 55-204 30-204 (445)
273 2qx5_A Nucleoporin NIC96; mRNA 74.0 89 0.0031 32.6 21.2 83 350-443 300-385 (661)
274 4fhn_B Nucleoporin NUP120; pro 73.6 21 0.00071 40.6 12.1 148 449-613 816-969 (1139)
275 1qsa_A Protein (soluble lytic 71.5 1E+02 0.0034 32.0 34.4 19 253-271 295-313 (618)
276 3eiq_C Programmed cell death p 70.0 76 0.0026 30.1 13.1 67 417-483 220-291 (358)
277 3kea_A K1L; tropism, ANK repea 70.0 43 0.0015 30.6 11.6 183 49-244 36-224 (285)
278 4b4t_R RPN7, 26S proteasome re 69.7 14 0.00048 36.5 8.5 96 415-510 132-238 (429)
279 3ltm_A Alpha-REP4; protein eng 69.6 53 0.0018 28.1 18.5 168 24-204 16-183 (211)
280 1n11_A Ankyrin; clathrin, BAND 69.5 73 0.0025 31.2 14.0 208 14-238 15-235 (437)
281 3mv2_A Coatomer subunit alpha; 67.9 66 0.0023 29.8 11.6 60 538-611 195-256 (325)
282 3jxi_A Vanilloid receptor-rela 66.0 13 0.00045 33.4 7.1 92 48-140 9-119 (260)
283 4a1g_A Mitotic checkpoint seri 65.7 52 0.0018 26.6 9.4 48 567-614 84-133 (152)
284 1k1a_A B-cell lymphoma 3-encod 65.1 45 0.0015 29.1 10.5 17 18-34 14-30 (241)
285 3eu9_A Huntingtin-interacting 63.9 25 0.00086 30.8 8.5 13 22-34 18-30 (240)
286 3eiq_C Programmed cell death p 62.6 80 0.0027 29.9 11.6 71 317-387 221-296 (358)
287 3ltj_A Alpharep-4; protein eng 61.8 73 0.0025 26.9 19.2 48 210-257 119-166 (201)
288 4g8k_A 2-5A-dependent ribonucl 59.8 99 0.0034 28.8 12.4 79 298-381 219-303 (337)
289 4g8k_A 2-5A-dependent ribonucl 59.7 1.1E+02 0.0038 28.4 14.7 23 14-36 26-48 (337)
290 2wvi_A Mitotic checkpoint seri 59.1 72 0.0025 26.2 9.2 48 567-614 79-128 (164)
291 1n11_A Ankyrin; clathrin, BAND 58.3 1.4E+02 0.0048 29.1 15.9 18 119-136 52-69 (437)
292 3hra_A Ankyrin repeat family p 58.3 64 0.0022 27.1 9.9 150 19-176 11-172 (201)
293 1oyz_A Hypothetical protein YI 57.9 1.1E+02 0.0037 27.6 20.5 201 31-242 27-236 (280)
294 4b4t_R RPN7, 26S proteasome re 56.2 62 0.0021 31.8 10.3 94 381-474 133-237 (429)
295 3b7b_A Euchromatic histone-lys 55.5 43 0.0015 29.2 8.5 22 285-306 214-235 (237)
296 3ltj_A Alpharep-4; protein eng 54.6 96 0.0033 26.1 18.8 83 420-507 96-178 (201)
297 3t8k_A Uncharacterized protein 53.4 94 0.0032 26.0 9.8 89 122-211 14-108 (186)
298 3hra_A Ankyrin repeat family p 53.3 73 0.0025 26.7 9.4 16 122-137 13-28 (201)
299 3eu9_A Huntingtin-interacting 51.6 67 0.0023 27.9 9.1 49 86-138 16-66 (240)
300 3kea_A K1L; tropism, ANK repea 50.2 71 0.0024 29.0 9.2 18 119-136 67-84 (285)
301 3aji_A 26S proteasome non-ATPa 50.1 1.2E+02 0.0039 26.2 10.4 113 15-136 8-128 (231)
302 3jxi_A Vanilloid receptor-rela 50.1 24 0.00081 31.6 5.9 53 151-203 11-72 (260)
303 3ltm_A Alpha-REP4; protein eng 49.5 1.2E+02 0.0041 25.7 19.2 48 210-257 124-171 (211)
304 3esl_A Checkpoint serine/threo 48.3 1.3E+02 0.0044 25.7 9.6 82 431-514 61-148 (202)
305 3b7b_A Euchromatic histone-lys 48.1 62 0.0021 28.2 8.3 16 323-338 217-232 (237)
306 2nsz_A Programmed cell death p 43.7 1E+02 0.0034 24.0 7.6 65 317-381 11-80 (129)
307 3d9h_A CDNA FLJ77766, highly s 43.3 1.1E+02 0.0037 27.8 9.3 118 11-137 13-148 (285)
308 2rfa_A Transient receptor pote 42.1 1.7E+02 0.0057 25.2 10.4 152 15-173 5-182 (232)
309 2f8y_A Notch homolog 1, transl 41.0 1.7E+02 0.0057 24.9 10.1 126 2-137 11-148 (223)
310 2rfa_A Transient receptor pote 40.6 1.7E+02 0.0058 25.1 9.9 19 290-308 163-181 (232)
311 2fu4_A Ferric uptake regulatio 39.0 96 0.0033 21.5 6.5 62 65-127 6-68 (83)
312 3ljn_A Hypothetical protein; a 38.1 64 0.0022 30.6 7.1 14 223-236 181-194 (364)
313 2d2s_A Exocyst complex compone 38.0 92 0.0031 27.4 7.3 84 452-539 25-114 (235)
314 2nsz_A Programmed cell death p 37.3 1.4E+02 0.005 23.1 7.8 63 418-480 11-78 (129)
315 1mzb_A Ferric uptake regulatio 37.2 1E+02 0.0034 24.3 6.9 62 66-128 8-70 (136)
316 2d2s_A Exocyst complex compone 36.4 1.1E+02 0.0039 26.8 7.6 22 249-270 97-118 (235)
317 2ion_A PDCD4, programmed cell 36.1 86 0.0029 25.3 6.3 65 317-381 13-82 (152)
318 2zu6_B Programmed cell death p 36.1 1E+02 0.0035 28.5 7.6 65 317-381 170-239 (307)
319 2xig_A Ferric uptake regulatio 35.9 1.1E+02 0.0039 24.5 7.1 63 65-128 16-78 (150)
320 2fe3_A Peroxide operon regulat 35.6 98 0.0033 24.7 6.6 62 65-127 11-72 (145)
321 2pk8_A Uncharacterized protein 35.5 37 0.0013 24.2 3.3 25 642-666 16-40 (103)
322 3bqo_A Telomeric repeat-bindin 35.5 1.9E+02 0.0066 24.4 8.1 49 555-603 124-172 (211)
323 2w57_A Ferric uptake regulatio 35.5 1.1E+02 0.0037 24.6 6.9 63 65-128 6-69 (150)
324 4aez_C MAD3, mitotic spindle c 34.5 1.3E+02 0.0043 26.2 7.3 46 566-611 132-179 (223)
325 1oyz_A Hypothetical protein YI 33.8 2.6E+02 0.0088 25.0 21.9 18 210-227 140-157 (280)
326 2zu6_B Programmed cell death p 33.3 2.5E+02 0.0085 25.9 9.7 57 215-271 6-66 (307)
327 3aji_A 26S proteasome non-ATPa 32.5 1.7E+02 0.0058 25.0 8.5 85 48-137 10-96 (231)
328 2r9g_A AAA ATPase, central reg 31.2 2.4E+02 0.0083 23.9 8.8 47 347-394 14-63 (204)
329 4b4t_S RPN3, 26S proteasome re 30.9 1.5E+02 0.005 29.8 8.1 58 482-541 233-295 (523)
330 3mkr_B Coatomer subunit alpha; 30.7 1.7E+02 0.0059 27.0 8.0 60 538-611 186-247 (320)
331 4ets_A Ferric uptake regulatio 30.5 1.5E+02 0.0051 24.2 7.0 70 58-128 14-86 (162)
332 2etb_A Transient receptor pote 30.2 86 0.0029 27.7 6.2 90 48-139 6-115 (256)
333 3ljn_A Hypothetical protein; a 30.0 1.3E+02 0.0045 28.4 7.8 16 424-439 180-195 (364)
334 2ion_A PDCD4, programmed cell 29.0 1.5E+02 0.0051 23.9 6.6 63 418-480 13-80 (152)
335 4b4t_S RPN3, 26S proteasome re 28.9 1.3E+02 0.0046 30.0 7.4 68 516-583 231-305 (523)
336 4gq2_M Nucleoporin NUP120; bet 28.7 4.5E+02 0.015 29.0 12.5 33 550-582 899-932 (950)
337 2fe3_A Peroxide operon regulat 28.7 1.1E+02 0.0038 24.4 5.8 64 28-91 8-71 (145)
338 3utm_A Tankyrase-1; tankyrase, 28.4 3.5E+02 0.012 24.8 13.9 247 16-279 27-309 (351)
339 3kae_A CDC27, possible protein 28.4 2.5E+02 0.0086 23.2 15.2 78 426-505 45-139 (242)
340 3eyy_A Putative iron uptake re 28.3 96 0.0033 24.7 5.4 61 65-127 8-68 (145)
341 1bd8_A P19INK4D CDK4/6 inhibit 28.2 71 0.0024 25.4 4.8 149 80-238 3-156 (156)
342 4a1g_A Mitotic checkpoint seri 28.2 2.3E+02 0.008 22.8 9.0 53 462-515 82-135 (152)
343 3bge_A Predicted ATPase; struc 27.2 1.9E+02 0.0066 24.4 6.9 46 349-394 9-57 (201)
344 3ygs_P Procaspase 9; apoptosis 27.1 80 0.0027 23.1 4.3 38 428-465 51-88 (97)
345 1ya0_A SMG-7 transcript varian 26.6 1.6E+02 0.0053 29.6 7.6 75 519-593 155-231 (497)
346 2cfu_A SDSA1; SDS-hydrolase, l 26.4 1.1E+02 0.0037 32.1 6.8 64 532-598 436-499 (658)
347 3ygs_P Procaspase 9; apoptosis 26.1 55 0.0019 24.0 3.2 34 56-93 52-85 (97)
348 2pnn_A Transient receptor pote 26.0 1.7E+02 0.0057 26.1 7.4 89 50-139 19-126 (273)
349 2etb_A Transient receptor pote 24.8 63 0.0022 28.6 4.2 54 82-136 5-68 (256)
350 3d9h_A CDNA FLJ77766, highly s 24.6 3.8E+02 0.013 24.0 9.8 117 14-139 60-182 (285)
351 2ko4_A Mediator of RNA polymer 24.6 1.2E+02 0.0042 21.0 4.3 38 30-67 23-62 (81)
352 1ug3_A EIF4GI, eukaryotic prot 24.2 3.6E+02 0.012 25.2 9.4 91 317-407 15-113 (339)
353 2pnn_A Transient receptor pote 23.9 1.4E+02 0.0049 26.6 6.5 16 223-238 109-124 (273)
354 3ctd_A Putative ATPase, AAA fa 23.5 3.5E+02 0.012 23.2 8.0 50 345-394 33-85 (213)
355 3twr_A Tankyrase-2; ankyrin re 23.3 2.8E+02 0.0095 22.0 8.3 19 17-35 12-30 (165)
356 2wvi_A Mitotic checkpoint seri 23.0 3.1E+02 0.011 22.4 9.6 52 463-515 78-130 (164)
357 4gq2_M Nucleoporin NUP120; bet 22.6 5E+02 0.017 28.7 11.4 52 16-68 816-867 (950)
358 2xig_A Ferric uptake regulatio 21.8 1.5E+02 0.0053 23.7 5.5 63 29-91 14-76 (150)
359 2o03_A Probable zinc uptake re 21.7 1.3E+02 0.0044 23.4 4.9 46 82-127 16-61 (131)
360 1wgl_A TOLL-interacting protei 21.2 73 0.0025 20.7 2.7 42 571-613 13-54 (59)
361 3t8k_A Uncharacterized protein 21.2 3.5E+02 0.012 22.3 8.3 56 152-211 13-69 (186)
362 4ets_A Ferric uptake regulatio 21.0 1.3E+02 0.0044 24.6 4.9 64 29-92 20-85 (162)
363 3b34_A Aminopeptidase N; prote 21.0 4.2E+02 0.014 28.9 10.2 107 494-605 747-864 (891)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-40 Score=359.14 Aligned_cols=480 Identities=9% Similarity=-0.030 Sum_probs=400.1
Q ss_pred HHhcCChHHHHHHhhccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHH
Q 005881 121 YGKCGLLSSAQFVFDASLERNSISWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCASVLGACAVLGNLKVGMQIH 200 (672)
Q Consensus 121 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 200 (672)
+.+.|....+...+..++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|...|+++.|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45667778888888888888899999999999999999999999999985 5688899999999999999999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHHHhcCCCC-------------------CcchHHHHHHHHHhcCChhH
Q 005881 201 SLVFKCALEFDKFVAMGLINLYAKCEKLDLASRVFSNIQLP-------------------DLTAWSALIGGYAQLGKACE 261 (672)
Q Consensus 201 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~~ 261 (672)
+.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 987543 678899999999999999999999999965433 37789999999999999999
Q ss_pred HHHHHHHHHHCCCCCChh-hHHHHHHHhhccCCchhH--HHH-HHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHh
Q 005881 262 AIDLFVKMFSSGLMPSEV-TFSYVLGAFADVKETIGG--RQL-HSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFD 337 (672)
Q Consensus 262 a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a--~~~-~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 337 (672)
|+..|++|.+.+ |+.. .+..+...+...+..+.. ..+ +..+...+..+...+++.++..|.+.|++++|.++|+
T Consensus 219 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 219 AKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 999999998863 5443 344444333333222211 111 4445555556666778888999999999999999999
Q ss_pred hCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCccc
Q 005881 338 EMDE--HDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVV 415 (672)
Q Consensus 338 ~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 415 (672)
++.+ ++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++.+.|+.++|..+++.+.+.. +.+..
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 374 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAV 374 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHH
Confidence 9988 789999999999999999999999999999765 3377889999999999999999999999998654 45678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 005881 416 IGSALVDMYAKCGRLNDARKVFDHLS---SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVH 492 (672)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 492 (672)
+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 89999999999999999999999875 4567799999999999999999999999999863 4577899999999999
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCC
Q 005881 493 IGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSS-------PIEPN--KVVWRCLLSGCKTHKD 563 (672)
Q Consensus 493 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g~ 563 (672)
.|++++|.++|+.+.+.. +.+..+|..++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|+
T Consensus 454 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 454 LGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp HTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 999999999999998532 336889999999999999999999999875 56787 7899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 005881 564 LVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 564 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 611 (672)
+++|...++++++++|+++.+|..++.+|.+.|++++|.+.++++.+.
T Consensus 532 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999998763
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.2e-41 Score=359.81 Aligned_cols=500 Identities=9% Similarity=-0.059 Sum_probs=348.0
Q ss_pred HHhcCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhcCCChhhHHHH
Q 005881 19 MYVKFSRINDAQKLFDEMPERNVISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSACASRGDARSGKEI 98 (672)
Q Consensus 19 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 98 (672)
.+.+.|....+...|..++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..++.+|.+.|++++|..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 355677788888889998889999999999999999999999999999985 468889999999999999999999999
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhhccCCC-------------------CcccHHHHHHHHHhcCChH
Q 005881 99 HGRMYRSGLELNSHVSNCLINMYGKCGLLSSAQFVFDASLER-------------------NSISWVSLLSSYCQCGEHV 159 (672)
Q Consensus 99 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~ 159 (672)
++.+... ++++.+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9987644 678999999999999999999999999964433 3788999999999999999
Q ss_pred HHHHHHHHHHhCCCCCChh-hHHHHHHHHhccCChHH--HHHH-HHHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHHH
Q 005881 160 HGLKIFLLSRKSGVAISEF-SCASVLGACAVLGNLKV--GMQI-HSLVFKCALEFDKFVAMGLINLYAKCEKLDLASRVF 235 (672)
Q Consensus 160 ~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~--a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 235 (672)
+|+++|++|.+.+ |+.. .+..+...+...+.... +..+ +..+...+..+...+++.++..|.+.|++++|.++|
T Consensus 218 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 218 RAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 9999999998853 4433 33333333322222111 1111 444455555666677888889999999999999999
Q ss_pred hcCCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCchhHHHHHHHHHHhCCCCch
Q 005881 236 SNIQL--PDLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVKETIGGRQLHSLIIKMGFSSFT 313 (672)
Q Consensus 236 ~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 313 (672)
+.+.+ ++..+|+.++..|.+.|++++|+.+|+++.+.+ +.+..++..++.++.+.|+.++|.++++.+.+.. +.+.
T Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 373 (597)
T 2xpi_A 296 SSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKA 373 (597)
T ss_dssp HTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSH
T ss_pred HHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccH
Confidence 99886 788899999999999999999999999998764 2366667777777777777777777777666443 3344
Q ss_pred HHHHHHHHHHHccCChHHHHHHHhhCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHc
Q 005881 314 FVANTVLDFYSKCELLEESLKTFDEMDE---HDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISS 390 (672)
Q Consensus 314 ~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 390 (672)
.+++.++.+|.+.|++++|..+|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------- 437 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF---------------- 437 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------
Confidence 4555555555555555555555554421 233344444444444444444444444444321
Q ss_pred CcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 005881 391 DIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSM 470 (672)
Q Consensus 391 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 470 (672)
..+..+|+.++.+|.+.|++++|.++|++
T Consensus 438 ---------------------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 438 ---------------------------------------------------QGTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp ---------------------------------------------------TTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ---------------------------------------------------ccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22445556666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhh---CCCCc--hHHHHHHHHHhhccCChHHHHHHHHhC-CC
Q 005881 471 MQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDH---GISPR--MDHIASVVHLFACRGQTRRAYEFIKSS-PI 544 (672)
Q Consensus 471 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 544 (672)
+.+.. +.+..+|..++..+.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++ ..
T Consensus 467 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 467 SYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 66532 3345566666666666666666666666665332 44565 567777777777777777777777653 22
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHh
Q 005881 545 EP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAE 594 (672)
Q Consensus 545 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 594 (672)
.| +..+|..+...|...|++++|...++++++++|+++..+..++.+|..
T Consensus 546 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 546 STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 34 778899999999999999999999999999999999999999988753
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=6.5e-28 Score=247.25 Aligned_cols=216 Identities=12% Similarity=0.114 Sum_probs=171.2
Q ss_pred hhHHHHHHHhHhCCCCCCcc-cHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhhc
Q 005881 58 EVALNYFRLMVCCVLEPNYY-TYVGAVSACASRGDARSGKEIHGRMYRSGLELNSHVSNCLINMYGKCGLLSSAQFVFDA 136 (672)
Q Consensus 58 ~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 136 (672)
..+..+.+++.+.++.+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 34556667777777766554 58889999999999999999999999999999999999999999887764332
Q ss_pred cCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCcHHHHH
Q 005881 137 SLERNSISWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCASVLGACAVLGNLKVGMQIHSLVFKCALEFDKFVAM 216 (672)
Q Consensus 137 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 216 (672)
.+.+..++|.++|++|...|+.||..||+.+|.+|++.|+++.|.+++++|.+.|+.||..
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~--- 141 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR--- 141 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH---
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc---
Confidence 2345678899999999999999999999999999999999999999999999999886554
Q ss_pred HHHHHhhcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCchh
Q 005881 217 GLINLYAKCEKLDLASRVFSNIQLPDLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVKETIG 296 (672)
Q Consensus 217 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 296 (672)
+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|+.++
T Consensus 142 ----------------------------tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~ 193 (501)
T 4g26_A 142 ----------------------------SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADK 193 (501)
T ss_dssp ----------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred ----------------------------eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHH
Confidence 4556666677777778888888888888888999999999998888888888
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHcc
Q 005881 297 GRQLHSLIIKMGFSSFTFVANTVLDFYSKC 326 (672)
Q Consensus 297 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 326 (672)
|.+++++|.+.|..|+..+|+.++..|...
T Consensus 194 A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 194 VYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 888888888888888888888888887653
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1.1e-24 Score=220.46 Aligned_cols=371 Identities=15% Similarity=0.104 Sum_probs=248.1
Q ss_pred HHHhccCChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHHHhcCC---CCCcchHHHHHHHHHhcCChhH
Q 005881 185 GACAVLGNLKVGMQIHSLVFKCALEFDKFVAMGLINLYAKCEKLDLASRVFSNIQ---LPDLTAWSALIGGYAQLGKACE 261 (672)
Q Consensus 185 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~ 261 (672)
..+...|++++|.+.+..+.+..+ .+...+..+...+...|+.++|...++... ..+...|..+...+.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 345566777777777777665532 233445555556666666666666665443 2334456666666666666666
Q ss_pred HHHHHHHHHHCCCCCC-hhhHHHHHHHhhccCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCC
Q 005881 262 AIDLFVKMFSSGLMPS-EVTFSYVLGAFADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMD 340 (672)
Q Consensus 262 a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 340 (672)
|+..|+++... .|+ ..++..+..++...|++++|.+.+..+.+.. +.+...
T Consensus 86 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~------------------------- 137 (388)
T 1w3b_A 86 AIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCV------------------------- 137 (388)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHH-------------------------
T ss_pred HHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHH-------------------------
Confidence 66666666543 233 2234445555555555555555555544432 112223
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHH
Q 005881 341 EHDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCP-NLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSA 419 (672)
Q Consensus 341 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 419 (672)
+..+...+...|++++|.+.|+++.+. .| +..++..+...+...|+++.|...++.+.+... .+...+..
T Consensus 138 ------~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~ 208 (388)
T 1w3b_A 138 ------RSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYIN 208 (388)
T ss_dssp ------HHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred ------HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHH
Confidence 333444444445555555555555443 22 233444444455555555555555555554331 23455667
Q ss_pred HHHHHHhcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCc
Q 005881 420 LVDMYAKCGRLNDARKVFDHLS---SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPN-DNTFIGVLSACVHIGL 495 (672)
Q Consensus 420 l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~ 495 (672)
+...+...|++++|...|++.. ..+..+|..+...|...|++++|++.|+++.+. .|+ ..++..+..++.+.|+
T Consensus 209 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~ 286 (388)
T 1w3b_A 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGS 286 (388)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCC
Confidence 7778888888888888888765 345678888999999999999999999999885 454 5678888999999999
Q ss_pred HHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005881 496 VEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEK 573 (672)
Q Consensus 496 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 573 (672)
+++|...|+++.+. .+.+...+..++.++.+.|++++|.+.++++ ...| +..++..+...+.+.|++++|...+++
T Consensus 287 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (388)
T 1w3b_A 287 VAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999988743 2446788999999999999999999999863 4556 466888888999999999999999999
Q ss_pred HhcCCCCCCchHHHHHHHHHhcCC
Q 005881 574 ILSTDPEDTSAHIMLSNVYAEANM 597 (672)
Q Consensus 574 ~~~~~p~~~~~~~~l~~~~~~~g~ 597 (672)
+++++|+++.++..++.++...|+
T Consensus 365 a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 365 AIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999998887764
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.5e-27 Score=244.50 Aligned_cols=184 Identities=13% Similarity=-0.003 Sum_probs=171.0
Q ss_pred chHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhcCCC---------hhhHHHHHHHHHHhCCCCChh
Q 005881 42 ISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSACASRGD---------ARSGKEIHGRMYRSGLELNSH 112 (672)
Q Consensus 42 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~ 112 (672)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45889999999999999999999999999999999999999999987664 678999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhccC----CCCcccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 005881 113 VSNCLINMYGKCGLLSSAQFVFDASL----ERNSISWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCASVLGACA 188 (672)
Q Consensus 113 ~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 188 (672)
+|++||++|++.|++++|.++|++|. .||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999998875 46899999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcC
Q 005881 189 VLGNLKVGMQIHSLVFKCALEFDKFVAMGLINLYAKC 225 (672)
Q Consensus 189 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 225 (672)
+.|++++|.+++++|.+.|..|+..|++.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999988887653
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=2.4e-24 Score=217.82 Aligned_cols=350 Identities=15% Similarity=0.117 Sum_probs=297.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCChh-hHHHHHHHhhccCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHccCC
Q 005881 250 IGGYAQLGKACEAIDLFVKMFSSGLMPSEV-TFSYVLGAFADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCEL 328 (672)
Q Consensus 250 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 328 (672)
...+.+.|++++|...+.++.+. .|+.. .+..+...+...|+++.+...+....+.. +.+..++..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 34567788888888888887765 35444 44445556678888899988888887764 5567788999999999999
Q ss_pred hHHHHHHHhhCCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChH-HHHHHHHHHcCcCchHHHHHHHHH
Q 005881 329 LEESLKTFDEMDE--H-DVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLY-TYSNILNISSDIPAIEWGKQTHCC 404 (672)
Q Consensus 329 ~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~ 404 (672)
+++|...|+++.. | +..+|..+..++.+.|++++|++.|+++.+. .|+.. .+..+...+...|++++|...+..
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999998764 4 4457899999999999999999999999875 56544 555666788889999999999999
Q ss_pred HHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-H
Q 005881 405 IVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLS---SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPN-D 480 (672)
Q Consensus 405 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~ 480 (672)
+.+.. +.+..++..+...|.+.|++++|.+.|+++. ..+...|..+...+...|++++|+..|++.... .|+ .
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence 98864 3356788899999999999999999999986 344568889999999999999999999999884 565 5
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCC-CCHHHHHHHHHH
Q 005881 481 NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIE-PNKVVWRCLLSG 557 (672)
Q Consensus 481 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~ 557 (672)
.++..+..++...|++++|...|+++.+ ..| +...+..++.++.+.|++++|.+.++++ ... ++..+|..+...
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 7888999999999999999999999884 355 5688999999999999999999999864 223 477899999999
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 558 CKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 558 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
+...|++++|...+++++++.|+++..+..++.+|.+.|++++|.+.++++.+
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999875
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.7e-22 Score=211.13 Aligned_cols=428 Identities=9% Similarity=-0.057 Sum_probs=285.1
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhh
Q 005881 144 SWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCASVLGACAVLGNLKVGMQIHSLVFKCALEFDKFVAMGLINLYA 223 (672)
Q Consensus 144 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 223 (672)
.|......+.+.|++++|+..|+++.... |+...+..+..++...|+++.|...++.+++..+ .+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHH
Confidence 34555667777888888888888887754 6777777777777777888877777777776542 23344444555555
Q ss_pred cCCChhHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCchhHHHH
Q 005881 224 KCEKLDLASRVFSNIQL---PDLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVKETIGGRQL 300 (672)
Q Consensus 224 ~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 300 (672)
+.|++++|...|+.+.. ++......++..+........+.+.+..+...+..|+...+..-....
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------------ 152 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERK------------ 152 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------------------
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHH------------
Confidence 55555555444444321 122222233332222222222222222222222222222111100000
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCC---------CC-CcccHHHHHHHHHh---cCChhHHHHHH
Q 005881 301 HSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMD---------EH-DVVSWNALIAGHLA---SCHYGEAIELL 367 (672)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---------~~-~~~~~~~li~~~~~---~~~~~~A~~~~ 367 (672)
......|+.. .+...+.... .| +...+......+.. .|++++|+..|
T Consensus 153 ----~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 212 (514)
T 2gw1_A 153 ----DKQENLPSVT----------------SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESF 212 (514)
T ss_dssp --------CCCCHH----------------HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHH
T ss_pred ----hhccCCchhH----------------HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHH
Confidence 0000111111 1111111111 11 12334444444444 78999999999
Q ss_pred HHHHh-----CCCCC--------ChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHH
Q 005881 368 KDMLF-----EGHCP--------NLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDAR 434 (672)
Q Consensus 368 ~~m~~-----~g~~p--------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 434 (672)
+++.. ....| +..++..+...+...|+++.|...++.+.+.... ...+..+...|...|++++|.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~ 290 (514)
T 2gw1_A 213 TKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYY 290 (514)
T ss_dssp HHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGG
T ss_pred HHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHH
Confidence 99887 32222 2345666777888899999999999999887644 777888899999999999999
Q ss_pred HHHhhCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhC
Q 005881 435 KVFDHLSS---KNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHG 511 (672)
Q Consensus 435 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 511 (672)
+.++.+.+ .+...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+..
T Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 368 (514)
T 2gw1_A 291 NYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF- 368 (514)
T ss_dssp GHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-
Confidence 99988763 456788999999999999999999999999853 3345788889999999999999999999988532
Q ss_pred CCCchHHHHHHHHHhhccCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHhcCCCC
Q 005881 512 ISPRMDHIASVVHLFACRGQTRRAYEFIKSS----PIEPN----KVVWRCLLSGCKT---HKDLVLGRYAAEKILSTDPE 580 (672)
Q Consensus 512 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~ 580 (672)
+.+...+..++.++.+.|++++|.+.+++. +..|+ ...|..+...+.. .|++++|...++++++..|+
T Consensus 369 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 447 (514)
T 2gw1_A 369 -PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR 447 (514)
T ss_dssp -TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT
T ss_pred -ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc
Confidence 235688899999999999999999998763 22222 4478888889999 99999999999999999999
Q ss_pred CCchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 005881 581 DTSAHIMLSNVYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 581 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 611 (672)
++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 448 SEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988763
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.8e-21 Score=204.80 Aligned_cols=259 Identities=10% Similarity=-0.022 Sum_probs=204.6
Q ss_pred cCChHHHHHHHhhCCC-----------------CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 005881 326 CELLEESLKTFDEMDE-----------------HDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNI 388 (672)
Q Consensus 326 ~~~~~~a~~~~~~~~~-----------------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 388 (672)
.|++++|...|+++.+ .+...|..+...+...|++++|+..|+++.... |+...+..+...
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHH
Confidence 5666666666655432 123456667777888888888888888887763 336677777778
Q ss_pred HcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChHHHH
Q 005881 389 SSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLS---SKNLVSWNTMLVGYAQHGLGREAL 465 (672)
Q Consensus 389 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 465 (672)
+...|+++.|...++.+.+.. +.+..++..+...|...|++++|...|+.+. ..+...|..+...+...|++++|.
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 358 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCE 358 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888888887654 2356678888899999999999999998875 345678888999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCc----hHHHHHHHHHhhc---cCChHHHHHH
Q 005881 466 EIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPR----MDHIASVVHLFAC---RGQTRRAYEF 538 (672)
Q Consensus 466 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~ 538 (672)
+.|+++.+.. +.+...+..+...+...|++++|...++.+.....-.++ ...+..++.++.. .|++++|.+.
T Consensus 359 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~ 437 (514)
T 2gw1_A 359 TLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNL 437 (514)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHH
T ss_pred HHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHH
Confidence 9999998852 334578888999999999999999999988754333333 3488999999999 9999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHH
Q 005881 539 IKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIML 588 (672)
Q Consensus 539 ~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 588 (672)
+++. ...| +..+|..+...+...|++++|...++++++++|+++..+..+
T Consensus 438 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 438 LEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 9763 2334 567888899999999999999999999999999888777665
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=2.4e-21 Score=200.09 Aligned_cols=321 Identities=14% Similarity=0.105 Sum_probs=221.4
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCchhHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 005881 244 TAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDFY 323 (672)
Q Consensus 244 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 323 (672)
..|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|+++.|...++.+.+.+ +.+..++..+..+|
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 345555566666666666666666665431 2234445555555555555555555555555543 22344455555555
Q ss_pred HccCChHHHHHHHhhCCC--CC-c---ccHHHHHH------------HHHhcCChhHHHHHHHHHHhCCCCCChHHHHHH
Q 005881 324 SKCELLEESLKTFDEMDE--HD-V---VSWNALIA------------GHLASCHYGEAIELLKDMLFEGHCPNLYTYSNI 385 (672)
Q Consensus 324 ~~~~~~~~a~~~~~~~~~--~~-~---~~~~~li~------------~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~l 385 (672)
.+.|++++|...|+++.+ |+ . ..|..++. .+...|++++|+..|+++..
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------------- 171 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE------------- 171 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------------
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------
Confidence 556666666655555543 11 1 23333322 24445555555555555443
Q ss_pred HHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChH
Q 005881 386 LNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLS---SKNLVSWNTMLVGYAQHGLGR 462 (672)
Q Consensus 386 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 462 (672)
.. +.+..++..+..+|.+.|++++|.+.|+.+. ..+..+|..++..|...|+++
T Consensus 172 ----------------------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 228 (450)
T 2y4t_A 172 ----------------------VC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHE 228 (450)
T ss_dssp ----------------------HC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHH
T ss_pred ----------------------hC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 32 2244556778888888888888888888875 456778999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHH------------HHHhhccCcHHHHHHHHHHhHHhhCCCCc-----hHHHHHHHH
Q 005881 463 EALEIYSMMQENKIKPNDN-TFIGV------------LSACVHIGLVEEGWHYFNSMIRDHGISPR-----MDHIASVVH 524 (672)
Q Consensus 463 ~A~~~~~~m~~~g~~p~~~-~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~ 524 (672)
+|++.|+++... .|+.. .+..+ ...+.+.|++++|...|+.+.+. .|+ ..++..++.
T Consensus 229 ~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 229 LSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICH 303 (450)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHH
Confidence 999999999874 56554 33333 78899999999999999999853 454 457889999
Q ss_pred HhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHH------------
Q 005881 525 LFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSN------------ 590 (672)
Q Consensus 525 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~------------ 590 (672)
++.+.|++++|.+.++++ ...| +...|..+..+|...|++++|...++++++++|+++..+..++.
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 383 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRD 383 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchh
Confidence 999999999999999874 3445 67899999999999999999999999999999999999999984
Q ss_pred HHHhcC-----ChHHHHHHHHH
Q 005881 591 VYAEAN-----MWDETAKVRKI 607 (672)
Q Consensus 591 ~~~~~g-----~~~~a~~~~~~ 607 (672)
.|...| +.+++.+.+++
T Consensus 384 ~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 384 YYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp SGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHhCCCccCCHHHHHHHHHH
Confidence 455556 55666777665
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=1.6e-20 Score=198.70 Aligned_cols=418 Identities=10% Similarity=-0.030 Sum_probs=212.3
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhh
Q 005881 144 SWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCASVLGACAVLGNLKVGMQIHSLVFKCALEFDKFVAMGLINLYA 223 (672)
Q Consensus 144 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 223 (672)
.|..+...+.+.|++++|++.|+++.... +.+...+..+..++...|+++.|.+.++.+++... .+...+..+..++.
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHH
Confidence 44555566666667777777766666542 22445566666666666677777776666666542 24556666666677
Q ss_pred cCCChhHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCCChhhHHHHHHHhhccCCchhH
Q 005881 224 KCEKLDLASRVFSNIQLPDLTAWSALIGGYAQLGKACEAIDLFVKMFSS------GLMPSEVTFSYVLGAFADVKETIGG 297 (672)
Q Consensus 224 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p~~~t~~~ll~~~~~~~~~~~a 297 (672)
..|++++|...|+.+. .+....+..+..+...+...+|...++++... ...|+...+..
T Consensus 105 ~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~-------------- 169 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS-------------- 169 (537)
T ss_dssp HHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH--------------
T ss_pred HcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH--------------
Confidence 7777777777765332 22222223344444555556677777776443 12233222222
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCCCCCcc---cHHHHHHHHH--------hcCChhHHHHH
Q 005881 298 RQLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMDEHDVV---SWNALIAGHL--------ASCHYGEAIEL 366 (672)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~--------~~~~~~~A~~~ 366 (672)
+....+.+.+...+......+.. ....+...+. ..|++++|+.+
T Consensus 170 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~ 224 (537)
T 3fp2_A 170 -------------------------FFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDM 224 (537)
T ss_dssp -------------------------HHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHH
T ss_pred -------------------------HHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 22222333333332222221111 1111111111 11244455555
Q ss_pred HHHHHhCCCCCCh--------HHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHh
Q 005881 367 LKDMLFEGHCPNL--------YTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFD 438 (672)
Q Consensus 367 ~~~m~~~g~~p~~--------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 438 (672)
|+++.+. .|+. .++..+...+...|+++.|...+..+.+... +...+..+...|...|++++|.+.|+
T Consensus 225 ~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~ 300 (537)
T 3fp2_A 225 YHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFFQ 300 (537)
T ss_dssp HHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHHH
T ss_pred HHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5554433 2221 1233333344445555555555555554332 23444455555555555555555555
Q ss_pred hCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCc
Q 005881 439 HLS---SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPR 515 (672)
Q Consensus 439 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 515 (672)
.+. ..+..+|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+
T Consensus 301 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~ 377 (537)
T 3fp2_A 301 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTL 377 (537)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred HHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC
Confidence 543 2334455666666666666666666666666532 2223455556666666666666666666655321 223
Q ss_pred hHHHHHHHHHhhccCChHHHHHHHHhC----C----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhcC
Q 005881 516 MDHIASVVHLFACRGQTRRAYEFIKSS----P----IEPNKVVWRCLLSGCKTH----------KDLVLGRYAAEKILST 577 (672)
Q Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~----~----~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~ 577 (672)
...+..++.++...|++++|.+.+++. + .......+......+... |++++|...++++++.
T Consensus 378 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457 (537)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence 455666666666666666666665542 0 001112233333445555 7777777777777777
Q ss_pred CCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 578 DPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 578 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
+|+++.++..++.+|.+.|++++|.+.+++..+
T Consensus 458 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 458 DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 777777777777777777777777777776654
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=8.5e-20 Score=193.21 Aligned_cols=446 Identities=10% Similarity=-0.011 Sum_probs=287.4
Q ss_pred cchHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHHHHHH
Q 005881 41 VISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSACASRGDARSGKEIHGRMYRSGLELNSHVSNCLINM 120 (672)
Q Consensus 41 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 120 (672)
...|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|.+.++.+.+.. +.+...+..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4557777888888999999999999888754 4466778888888888899999999999888876 3367778888888
Q ss_pred HHhcCChHHHHHHhhccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHH
Q 005881 121 YGKCGLLSSAQFVFDASLERNSISWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCASVLGACAVLGNLKVGMQIH 200 (672)
Q Consensus 121 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 200 (672)
|...|++++|...|+.+ ..+....+..+..+...+....|+..++.+.... |+.
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~----------------------- 156 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EGR----------------------- 156 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC------------------------------
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--ccc-----------------------
Confidence 88888888888888633 2222223333444445555566777776665431 000
Q ss_pred HHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHHHhcCCCCCcc---hHHHHHHHHHh--------cCChhHHHHHHHHH
Q 005881 201 SLVFKCALEFDKFVAMGLINLYAKCEKLDLASRVFSNIQLPDLT---AWSALIGGYAQ--------LGKACEAIDLFVKM 269 (672)
Q Consensus 201 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~--------~~~~~~a~~~~~~m 269 (672)
.....|+.. .+..+....+.+.+...+......+.. ....+...+.. .|++++|..+++++
T Consensus 157 ----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~ 228 (537)
T 3fp2_A 157 ----GSQVLPSNT----SLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSL 228 (537)
T ss_dssp ------CCCCCHH----HHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cccccchHh----HHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 000011111 112222333344444444333322221 11111111111 12344444444444
Q ss_pred HHCCCCCChhhHHHHHHHhhccCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCCCCCcccHHH
Q 005881 270 FSSGLMPSEVTFSYVLGAFADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMDEHDVVSWNA 349 (672)
Q Consensus 270 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 349 (672)
.+.. |+. ...+..+. .++..
T Consensus 229 l~~~--p~~----------------------------------~~~~~~~~------------------------~~~~~ 248 (537)
T 3fp2_A 229 LSAN--TVD----------------------------------DPLRENAA------------------------LALCY 248 (537)
T ss_dssp HC----CCC----------------------------------HHHHHHHH------------------------HHHHH
T ss_pred HHHC--CCc----------------------------------chhhHHHH------------------------HHHHH
Confidence 3321 111 11111111 12333
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCC
Q 005881 350 LIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGR 429 (672)
Q Consensus 350 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 429 (672)
+...+...|++++|+..|++.... .|+...+..+...+...|+++.|...+..+.+... .+..++..+...|...|+
T Consensus 249 ~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 249 TGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCC
Confidence 445566677777777777777764 45566666777777778888888888877776542 356677888889999999
Q ss_pred HHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHh
Q 005881 430 LNDARKVFDHLS---SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSM 506 (672)
Q Consensus 430 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 506 (672)
+++|.+.|+++. ..+...|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...|+.+
T Consensus 326 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999998876 3456788999999999999999999999998853 344568888899999999999999999988
Q ss_pred HHhhCCCC----chHHHHHHHHHhhcc----------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 005881 507 IRDHGISP----RMDHIASVVHLFACR----------GQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYA 570 (672)
Q Consensus 507 ~~~~~~~p----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 570 (672)
.+...-.+ ....+..+..++.+. |++++|.+.+++. ...| +...|..+...+...|++++|...
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (537)
T 3fp2_A 405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIEL 484 (537)
T ss_dssp HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 75432112 223355566778887 9999999999863 3344 567888999999999999999999
Q ss_pred HHHHhcCCCCCCchHH
Q 005881 571 AEKILSTDPEDTSAHI 586 (672)
Q Consensus 571 ~~~~~~~~p~~~~~~~ 586 (672)
+++++++.|+++....
T Consensus 485 ~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 485 FEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHC--CHHHHH
T ss_pred HHHHHHhCCCcHHHHH
Confidence 9999999998766544
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=6.7e-20 Score=189.29 Aligned_cols=306 Identities=11% Similarity=0.026 Sum_probs=223.5
Q ss_pred ChhhHHHHHHHhhccCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCCC---CCcccHHHHHHH
Q 005881 277 SEVTFSYVLGAFADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMDE---HDVVSWNALIAG 353 (672)
Q Consensus 277 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~ 353 (672)
+...+..+...+.+.|+++.|..+++.+.+.. +.+..++..+..+|...|++++|...|+++.+ .+...+..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 34445555556666666666666666666543 33455556666666666666666666665543 234455556666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCh----HHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCC
Q 005881 354 HLASCHYGEAIELLKDMLFEGHCPNL----YTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGR 429 (672)
Q Consensus 354 ~~~~~~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 429 (672)
|.+.|++++|.+.|+++... .|+. ..+..+...+.. ..+..+...+.+.|+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCC
Confidence 66666666666666666543 3332 222222222110 012234556888999
Q ss_pred HHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHh
Q 005881 430 LNDARKVFDHLS---SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSM 506 (672)
Q Consensus 430 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 506 (672)
+++|...|+.+. ..+...+..++..|...|++++|++.|+++.+.. +.+..++..+...+...|++++|...|+.+
T Consensus 159 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 159 YTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999876 4567789999999999999999999999998853 455678999999999999999999999999
Q ss_pred HHhhCCCCc-hHHHHHH------------HHHhhccCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHH
Q 005881 507 IRDHGISPR-MDHIASV------------VHLFACRGQTRRAYEFIKSS-PIEPN-----KVVWRCLLSGCKTHKDLVLG 567 (672)
Q Consensus 507 ~~~~~~~p~-~~~~~~l------------~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a 567 (672)
... .|+ ...+..+ +..+.+.|++++|.+.++++ ...|+ ...|..+...+.+.|++++|
T Consensus 238 ~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 238 LKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHh---CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 843 453 4444444 88999999999999999864 34454 34678888889999999999
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 005881 568 RYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKS 612 (672)
Q Consensus 568 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 612 (672)
...++++++++|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 315 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 315 IRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999997643
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=2.8e-16 Score=170.32 Aligned_cols=550 Identities=9% Similarity=0.015 Sum_probs=372.4
Q ss_pred CCCCcchhhHHHHHHhcCCChhHHHHHhccCCC---------------CCc----------------ch------HHHHH
Q 005881 6 FHPNVITYNHLLLMYVKFSRINDAQKLFDEMPE---------------RNV----------------IS------WSALI 48 (672)
Q Consensus 6 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---------------~~~----------------~~------~~~li 48 (672)
+.-|+.+....|.+.++.|++.+.+++..+-.- +|. +. ....|
T Consensus 721 ~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~i 800 (1630)
T 1xi4_A 721 FSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYI 800 (1630)
T ss_pred ccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHH
Confidence 456888899999999999999998888776321 211 11 12456
Q ss_pred HHHHcCCCchhHHHHHHHhHhCCCCCC-----------cccHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHHH
Q 005881 49 SGFSQIGMPEVALNYFRLMVCCVLEPN-----------YYTYVGAVSACASRGDARSGKEIHGRMYRSGLELNSHVSNCL 117 (672)
Q Consensus 49 ~~~~~~g~~~~a~~~~~~m~~~~~~p~-----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 117 (672)
..|.+.-++..+-.+...+...+...+ .....-|+..+-+.+++......++.-...| ..++.++|+|
T Consensus 801 e~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnal 879 (1630)
T 1xi4_A 801 EIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNAL 879 (1630)
T ss_pred HHHHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHH
Confidence 677776666666666555554332221 1113334444445556666666677777777 4589999999
Q ss_pred HHHHHhcCChHHHHHHhhc------------cCCCCccc----------HHHHHHHHHhcCChHHHH-------------
Q 005881 118 INMYGKCGLLSSAQFVFDA------------SLERNSIS----------WVSLLSSYCQCGEHVHGL------------- 162 (672)
Q Consensus 118 i~~~~~~g~~~~a~~~~~~------------~~~~~~~~----------~~~li~~~~~~g~~~~a~------------- 162 (672)
...|...++-.+. .+.+ ..++|+.. -.-||...-+++.++.--
T Consensus 880 akiyid~n~npe~--fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~ 957 (1630)
T 1xi4_A 880 AKIYIDSNNNPER--FLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWG 957 (1630)
T ss_pred HHHHhccCCCHHH--HhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHH
Confidence 9999876543322 1111 01111110 112333333333222111
Q ss_pred -----------HHHHHHHhCC--CCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhcC--CCcHHHHHHHHHHhhcCCC
Q 005881 163 -----------KIFLLSRKSG--VAISEFSCASVLGACAVLGNLKVGMQIHSLVFKCAL--EFDKFVAMGLINLYAKCEK 227 (672)
Q Consensus 163 -----------~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~ 227 (672)
++.++-.... -..++.-.....+++...|.+.++.++++.++-.+- ..+....+.|+.+..+. +
T Consensus 958 ~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D 1036 (1630)
T 1xi4_A 958 SVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-D 1036 (1630)
T ss_pred HHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-C
Confidence 1111111111 122333445667777888888888888888874321 23445666677776666 4
Q ss_pred hhHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCchhHHHHHHHHHHh
Q 005881 228 LDLASRVFSNIQLPDLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVKETIGGRQLHSLIIKM 307 (672)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 307 (672)
..+..+..+.....+ ...+...+...|.+++|..+|++.. -.......++ ...+++++|.++.+..
T Consensus 1037 ~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aerv--- 1102 (1630)
T 1xi4_A 1037 RTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERC--- 1102 (1630)
T ss_pred hhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhc---
Confidence 455555555544222 4556777888999999999998852 1111122222 2667788888887754
Q ss_pred CCCCchHHHHHHHHHHHccCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHH
Q 005881 308 GFSSFTFVANTVLDFYSKCELLEESLKTFDEMDEHDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILN 387 (672)
Q Consensus 308 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 387 (672)
.+..+|..+..++...|++++|...|.+. .|...|..++.++.+.|++++|++.|...++.. ++....+.+..
T Consensus 1103 ---n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~Laf 1175 (1630)
T 1xi4_A 1103 ---NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 1175 (1630)
T ss_pred ---CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHH
Confidence 34778888999999999999999999764 667778889999999999999999998877654 33333445778
Q ss_pred HHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHH
Q 005881 388 ISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEI 467 (672)
Q Consensus 388 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 467 (672)
+|++.++++....+. + .++...+..+.+.|...|++++|..+|... ..|..+...|.+.|++++|.+.
T Consensus 1176 aYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A 1176 ALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred HHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHH
Confidence 888888887544442 1 334455667888999999999999999985 4899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHh-CCCCC
Q 005881 468 YSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKS-SPIEP 546 (672)
Q Consensus 468 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p 546 (672)
+++. -+..+|..+..+|...|++..|...... +..+++.+..++..|.+.|.+++|+.+++. ++++|
T Consensus 1244 arKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Ler 1311 (1630)
T 1xi4_A 1244 ARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLER 1311 (1630)
T ss_pred HHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCh
Confidence 9876 4457888889999999999988886543 345677788999999999999999999975 45555
Q ss_pred CH-HHHHHHHHHHHh--cCCHHHHHHHHHHHhcCCC-----CCCchHHHHHHHHHhcCChHHHHHH
Q 005881 547 NK-VVWRCLLSGCKT--HKDLVLGRYAAEKILSTDP-----EDTSAHIMLSNVYAEANMWDETAKV 604 (672)
Q Consensus 547 ~~-~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~~ 604 (672)
.. ..|+-+...+.+ .++..++.+.|..-+.+.| .+...|..++.+|.+.|+|+.|...
T Consensus 1312 aH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1312 AHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred hHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 33 355555555544 4678888888888888777 7888899999999999999999853
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=8.3e-18 Score=167.70 Aligned_cols=302 Identities=11% Similarity=0.018 Sum_probs=215.8
Q ss_pred hhHHHHHHHhhccCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCCC---CCcccHHHHHHHHH
Q 005881 279 VTFSYVLGAFADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMDE---HDVVSWNALIAGHL 355 (672)
Q Consensus 279 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~ 355 (672)
..+..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+++.+ .+...|..+...+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 345555666677777777777777777654 33455666677777777777777777776543 24456666677777
Q ss_pred hcCChhHHHHHHHHHHhCCCCC---ChHH-HHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHH
Q 005881 356 ASCHYGEAIELLKDMLFEGHCP---NLYT-YSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLN 431 (672)
Q Consensus 356 ~~~~~~~A~~~~~~m~~~g~~p---~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 431 (672)
..|++++|+..|++..+. .| +... +..+... .. ...+..+...+...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKA-------DE----------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHccCHH
Confidence 777777777777777654 34 2211 1111100 00 011223456778889999
Q ss_pred HHHHHHhhCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 005881 432 DARKVFDHLS---SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIR 508 (672)
Q Consensus 432 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 508 (672)
+|.+.|+.+. ..+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...|+.+.+
T Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999888875 3456678888888999999999999999988853 44556788888888899999999999988874
Q ss_pred hhCCCCc-hHHHH------------HHHHHhhccCChHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCCHHHHHH
Q 005881 509 DHGISPR-MDHIA------------SVVHLFACRGQTRRAYEFIKSS-PIEPN-K----VVWRCLLSGCKTHKDLVLGRY 569 (672)
Q Consensus 509 ~~~~~p~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~g~~~~a~~ 569 (672)
. .|+ ...+. .++..+.+.|++++|.+.+++. ...|+ . ..+..+...+...|++++|..
T Consensus 217 ~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 217 L---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp H---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred h---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 3 343 23222 3367788999999999998763 23343 2 224456677889999999999
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 570 AAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 570 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
.++++++.+|+++..+..++.+|...|++++|.+.+++..+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998875
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=1.2e-17 Score=166.64 Aligned_cols=315 Identities=13% Similarity=0.086 Sum_probs=239.1
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCchhHHHHHHHHHHhCCCCchHHHHHHHH
Q 005881 242 DLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVKETIGGRQLHSLIIKMGFSSFTFVANTVLD 321 (672)
Q Consensus 242 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 321 (672)
|+..+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|+++.|...++.+.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34567788889999999999999999998853 3456778888889999999999999999999875 445678889999
Q ss_pred HHHccCChHHHHHHHhhCCCCCc------ccHHHH------------HHHHHhcCChhHHHHHHHHHHhCCCCCChHHHH
Q 005881 322 FYSKCELLEESLKTFDEMDEHDV------VSWNAL------------IAGHLASCHYGEAIELLKDMLFEGHCPNLYTYS 383 (672)
Q Consensus 322 ~~~~~~~~~~a~~~~~~~~~~~~------~~~~~l------------i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~ 383 (672)
+|...|++++|...|++..+.++ ..+..+ ...+...|++++|++.++++.+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---------- 149 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV---------- 149 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------
Confidence 99999999999999999866332 233333 24445555555555555555433
Q ss_pred HHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCC
Q 005881 384 NILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLS---SKNLVSWNTMLVGYAQHGL 460 (672)
Q Consensus 384 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 460 (672)
. +.+...+..+...+...|++++|...++.+. ..+...|..+...+...|+
T Consensus 150 -------------------------~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 203 (359)
T 3ieg_A 150 -------------------------C-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGD 203 (359)
T ss_dssp -------------------------C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTC
T ss_pred -------------------------C-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 2 1234455667777888888888888887765 3455678888888888899
Q ss_pred hHHHHHHHHHHHHCCCCCCHH-HHH------------HHHHHhhccCcHHHHHHHHHHhHHhhCCCCch--HHHHHHHHH
Q 005881 461 GREALEIYSMMQENKIKPNDN-TFI------------GVLSACVHIGLVEEGWHYFNSMIRDHGISPRM--DHIASVVHL 525 (672)
Q Consensus 461 ~~~A~~~~~~m~~~g~~p~~~-~~~------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~ 525 (672)
+++|.+.|++..+. .|+.. .+. .+...+.+.|++++|...++.+.+...-.+.. ..+..++.+
T Consensus 204 ~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~ 281 (359)
T 3ieg_A 204 HELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHC 281 (359)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 99999999888874 44432 222 23566888999999999999988543211111 345668889
Q ss_pred hhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcC
Q 005881 526 FACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEAN 596 (672)
Q Consensus 526 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 596 (672)
+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++++|+++..+..+..++...+
T Consensus 282 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 282 FSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 99999999999999763 3345 67789999999999999999999999999999999998888888766543
No 16
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=1e-14 Score=158.37 Aligned_cols=532 Identities=13% Similarity=0.043 Sum_probs=358.0
Q ss_pred hhHHHHHHhcCCChhHHHHHhccCCC-CC-----cchHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHH
Q 005881 13 YNHLLLMYVKFSRINDAQKLFDEMPE-RN-----VISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSAC 86 (672)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~~~~-~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 86 (672)
-...+++|...|.+.+|+++++++.- |+ ....+.++..-.+. +..+..++.+++... ...-+...|
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Ia 1059 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIA 1059 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHH
Confidence 35567888888888888888888763 22 24455666666666 556666666665421 134477778
Q ss_pred hcCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhhccCCCCcccHHHHHHHHHhcCChHHHHHHHH
Q 005881 87 ASRGDARSGKEIHGRMYRSGLELNSHVSNCLINMYGKCGLLSSAQFVFDASLERNSISWVSLLSSYCQCGEHVHGLKIFL 166 (672)
Q Consensus 87 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 166 (672)
...|.+++|..+|+... ......+.++. ..+++++|.++.++.. +..+|..+..++...|++++|++.|.
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 88999999999998752 12222233333 6788999999988763 46789999999999999999999996
Q ss_pred HHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHHHhcCCCCCcchH
Q 005881 167 LSRKSGVAISEFSCASVLGACAVLGNLKVGMQIHSLVFKCALEFDKFVAMGLINLYAKCEKLDLASRVFSNIQLPDLTAW 246 (672)
Q Consensus 167 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 246 (672)
+. -|...|..++.+|.+.|+++++.+.+....+.. +++.+.+.++.+|++.+++++...+. ..++...|
T Consensus 1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~ 1198 (1630)
T 1xi4_A 1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHI 1198 (1630)
T ss_pred hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHH
Confidence 64 467788889999999999999999999887765 33334445889999999988655553 34566777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHcc
Q 005881 247 SALIGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKC 326 (672)
Q Consensus 247 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 326 (672)
..+...|...|++++|...|... ..|..+..++.+.|+++.|.+.++.. .+..+|..+-.+|...
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDG 1263 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhh
Confidence 88889999999999999999985 47899999999999999999998876 4568888888899999
Q ss_pred CChHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hHHH--HHHHHHHcCcCchHHHHHHHH
Q 005881 327 ELLEESLKTFDEMDEHDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPN-LYTY--SNILNISSDIPAIEWGKQTHC 403 (672)
Q Consensus 327 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~t~--~~ll~~~~~~~~~~~a~~~~~ 403 (672)
|++..|......+ ..+...+..++..|.+.|.+++|+.+++..... .|. ...| ...+.+-.+.++..+..+.|.
T Consensus 1264 ~Ef~LA~~cgl~I-iv~~deLeeli~yYe~~G~feEAI~LlE~aL~L--eraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1264 KEFRLAQMCGLHI-VVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred hHHHHHHHHHHhh-hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999998887653 345556778899999999999999999887643 332 2233 334444445555555555554
Q ss_pred HHHhcCCCC------cccHHHHHHHHHHhcCCHHHHHHHHhhC-------------C--CCCchhHHHHHHHHHhcC---
Q 005881 404 CIVKPGFDS------NVVIGSALVDMYAKCGRLNDARKVFDHL-------------S--SKNLVSWNTMLVGYAQHG--- 459 (672)
Q Consensus 404 ~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------------~--~~~~~~~~~li~~~~~~g--- 459 (672)
.-. ++++ ....|.-++-.|.+.|+++.|....-+- . ..|+..|...+.-|...+
T Consensus 1341 ~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~ 1418 (1630)
T 1xi4_A 1341 SRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLL 1418 (1630)
T ss_pred Hhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHH
Confidence 322 2222 5667888999999999999998332211 1 245555655555555544
Q ss_pred ------------ChHHHHHHHHHHHHCCCCCCHHHHH-------------HHHHHhhccCcHHHHHHHHHHhH------H
Q 005881 460 ------------LGREALEIYSMMQENKIKPNDNTFI-------------GVLSACVHIGLVEEGWHYFNSMI------R 508 (672)
Q Consensus 460 ------------~~~~A~~~~~~m~~~g~~p~~~~~~-------------~ll~~~~~~g~~~~a~~~~~~~~------~ 508 (672)
+++++.++|.+. |--|-...|. .+...+....+++.-..-.+... -
T Consensus 1419 lndLl~~l~~rlD~~R~V~l~~~~---~~l~lik~yl~~vq~~n~~~Vneal~el~ieeed~~~Lr~si~~~~nfd~~~L 1495 (1630)
T 1xi4_A 1419 LNDLLMVLSPRLDHTRAVNYFSKV---KQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISL 1495 (1630)
T ss_pred HHHHHHHhhhcCChHHHHHHHHHc---CChHHhHHHHHHHHHhcchhhhHHHHHHhcCccchHHHHHHHhhccCcCHHHH
Confidence 666666666531 1111111111 11122222222221111110000 0
Q ss_pred hhCCC-CchHHHHHH-HHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHH
Q 005881 509 DHGIS-PRMDHIASV-VHLFACRGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHI 586 (672)
Q Consensus 509 ~~~~~-p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 586 (672)
...++ .+.--+..+ ..+|.+.|+++.|.+++++-+. |.-.+......|+.+.++.++.--.+. .+.+.|.
T Consensus 1496 a~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k~d~l------~~dAm~~a~~S~d~e~~e~ll~~F~~~--~~~E~f~ 1567 (1630)
T 1xi4_A 1496 AQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSL------YKDAMQYASESKDTELAEELLQWFLQE--EKRECFG 1567 (1630)
T ss_pred HHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHHhccC------HHHHHHHHHHcCCHHHHHHHHHHHHhc--CChhHHH
Confidence 00000 011111222 3445667999999999988763 555677888899999998888877776 4667777
Q ss_pred HHHHHHHhcCChHHHHHH
Q 005881 587 MLSNVYAEANMWDETAKV 604 (672)
Q Consensus 587 ~l~~~~~~~g~~~~a~~~ 604 (672)
...-.+...=+.+-+.++
T Consensus 1568 a~Ly~cy~l~~pd~vle~ 1585 (1630)
T 1xi4_A 1568 ACLFTCYDLLRPDVVLET 1585 (1630)
T ss_pred HHHHHHhccCCchHHHHH
Confidence 777777777777766554
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=1.8e-17 Score=163.15 Aligned_cols=286 Identities=9% Similarity=-0.055 Sum_probs=201.3
Q ss_pred CCchHHHHHHHHHHHccCChHHHHHHHhhCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHH
Q 005881 310 SSFTFVANTVLDFYSKCELLEESLKTFDEMDE---HDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNIL 386 (672)
Q Consensus 310 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll 386 (672)
+.+..++..+...+...|++++|..+|+++.+ .+...+..++..+...|++++|...++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 33444555666666667777777777776643 234455666677777777777777777777642 22445566666
Q ss_pred HHHcCcC-chHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChH
Q 005881 387 NISSDIP-AIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLS---SKNLVSWNTMLVGYAQHGLGR 462 (672)
Q Consensus 387 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 462 (672)
..+...| +++.|...++.+.+.. +.+...+..+...|...|++++|.+.|+++. ..+...+..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 6666777 7777777777776654 2245667777888888888888888888765 334566777888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCC-------CCchHHHHHHHHHhhccCChHHH
Q 005881 463 EALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGI-------SPRMDHIASVVHLFACRGQTRRA 535 (672)
Q Consensus 463 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-------~p~~~~~~~l~~~~~~~g~~~~A 535 (672)
+|.+.|++..+.. +.+...+..+...+...|++++|...++.+.+...- +.....+..++.+|...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888888752 334567777888888888888888888877753211 22356788888888888888888
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHH-HhcCCh
Q 005881 536 YEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVY-AEANMW 598 (672)
Q Consensus 536 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 598 (672)
.+.+++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.++ ...|+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 8888753 2233 5567777888888888888888888888888888888888888877 445554
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=1.1e-16 Score=155.97 Aligned_cols=345 Identities=14% Similarity=0.086 Sum_probs=136.8
Q ss_pred hcCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhcCCChhhHHHHHH
Q 005881 21 VKFSRINDAQKLFDEMPERNVISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSACASRGDARSGKEIHG 100 (672)
Q Consensus 21 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 100 (672)
-+.|++++|.+.++++..|+ +|..+..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 36788999999999997664 899999999999999999999975 3678899999999999999999999888
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhhccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH
Q 005881 101 RMYRSGLELNSHVSNCLINMYGKCGLLSSAQFVFDASLERNSISWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSC 180 (672)
Q Consensus 101 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 180 (672)
..++. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 77775 45688899999999999999999988864 67789999999999999999999999977 468
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhcCChh
Q 005881 181 ASVLGACAVLGNLKVGMQIHSLVFKCALEFDKFVAMGLINLYAKCEKLDLASRVFSNIQLPDLTAWSALIGGYAQLGKAC 260 (672)
Q Consensus 181 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 260 (672)
..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 88888888888888888888776 266777777777777777777766655543 33333445667777777777
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHc--cCChHHHHHHHhh
Q 005881 261 EAIDLFVKMFSSGLMPSEVTFSYVLGAFADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSK--CELLEESLKTFDE 338 (672)
Q Consensus 261 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~ 338 (672)
+|+.+++...... + ....+|+.|.-+|++ -+++.+..+.|..
T Consensus 225 Eai~lLe~aL~le--~----------------------------------ah~~~ftel~il~~ky~p~k~~ehl~~~~~ 268 (449)
T 1b89_A 225 ELITMLEAALGLE--R----------------------------------AHMGMFTELAILYSKFKPQKMREHLELFWS 268 (449)
T ss_dssp HHHHHHHHHTTST--T----------------------------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHhCCc--H----------------------------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 7777777665332 1 122222333333332 2233344444433
Q ss_pred CCC--------CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCC
Q 005881 339 MDE--------HDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGF 410 (672)
Q Consensus 339 ~~~--------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 410 (672)
-.. .+...|..+.-.|.+.++++.|... |.+. .|+...-..+.....+..+.+---+....-...
T Consensus 269 ~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~-- 341 (449)
T 1b89_A 269 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF-- 341 (449)
T ss_dssp TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc--
Confidence 222 2456788888888888888888763 4433 233333333333333444433322222222211
Q ss_pred CCcccHHHHHHHHHHhcCCHHHHHHHHhh
Q 005881 411 DSNVVIGSALVDMYAKCGRLNDARKVFDH 439 (672)
Q Consensus 411 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 439 (672)
.+...+-|+.++...=+.+++.++|+.
T Consensus 342 --~p~~l~~ll~~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 342 --KPLLLNDLLMVLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp --CGGGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 122244444444444444455444444
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=9e-17 Score=158.13 Aligned_cols=263 Identities=11% Similarity=0.051 Sum_probs=225.1
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHH
Q 005881 342 HDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALV 421 (672)
Q Consensus 342 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 421 (672)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..+...+...|++++|...+..+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 456677888889999999999999999998763 2244556667788889999999999999999865 33567788899
Q ss_pred HHHHhcC-CHHHHHHHHhhCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHH
Q 005881 422 DMYAKCG-RLNDARKVFDHLSS---KNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVE 497 (672)
Q Consensus 422 ~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 497 (672)
..+...| ++++|.+.|+++.+ .+...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998763 456789999999999999999999999999853 334567777899999999999
Q ss_pred HHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-------C----CCCCHHHHHHHHHHHHhcCCHH
Q 005881 498 EGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-------P----IEPNKVVWRCLLSGCKTHKDLV 565 (672)
Q Consensus 498 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~----~~p~~~~~~~l~~~~~~~g~~~ 565 (672)
+|...++.+. ...| +...+..++..+...|++++|.+.+++. + .......|..+...+...|+++
T Consensus 177 ~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 177 LAERFFSQAL---SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHH---TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHH---HhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999999987 3455 5788999999999999999999998753 1 1234568889999999999999
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 566 LGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 566 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
+|...+++++++.|+++..+..++.+|...|++++|.+.+++..+
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999997754
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=1.4e-17 Score=162.10 Aligned_cols=286 Identities=13% Similarity=0.075 Sum_probs=134.6
Q ss_pred cCCChhHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCchhHHHHHHH
Q 005881 224 KCEKLDLASRVFSNIQLPDLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVKETIGGRQLHSL 303 (672)
Q Consensus 224 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 303 (672)
+.|++++|.++++++..| .+|..+..++.+.|++++|++.|.+ .+|..+|..++.++...|+++++..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 678899999999999655 4899999999999999999999965 36778999999999999999999998887
Q ss_pred HHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHH
Q 005881 304 IIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMDEHDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYS 383 (672)
Q Consensus 304 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~ 383 (672)
.++. .+++.+.+.|+.+|.+.|+++++..+++. |+..+|+.+...|...|++++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 7774 44577888999999999999998887753 77789999999999999999999999977 4788
Q ss_pred HHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHH
Q 005881 384 NILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGRE 463 (672)
Q Consensus 384 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 463 (672)
.+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 9999999999999999998887 367889999999999999999988777655 444445568889999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhh--ccCcHHHHHHHHHHhHHhhCCCC------chHHHHHHHHHhhccCChHHH
Q 005881 464 ALEIYSMMQENKIKPNDNTFIGVLSACV--HIGLVEEGWHYFNSMIRDHGISP------RMDHIASVVHLFACRGQTRRA 535 (672)
Q Consensus 464 A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A 535 (672)
|+.+++..+... +.-...|..+.-+++ +.+++.+.++.|. .+-+++| +...|.-++..|...++++.|
T Consensus 226 ai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A 301 (449)
T 1b89_A 226 LITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 301 (449)
T ss_dssp HHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 999999988643 223345555544444 4455555555554 3335555 356789999999999999998
Q ss_pred HHHHHhC
Q 005881 536 YEFIKSS 542 (672)
Q Consensus 536 ~~~~~~~ 542 (672)
...+-+-
T Consensus 302 ~~tm~~h 308 (449)
T 1b89_A 302 IITMMNH 308 (449)
T ss_dssp HHHHHHS
T ss_pred HHHHHhC
Confidence 8776543
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=3e-15 Score=157.47 Aligned_cols=210 Identities=11% Similarity=0.021 Sum_probs=167.4
Q ss_pred HHHHHHHHHHhcCCCCcccHHHHHHHHHHh-------cCCHH-------HHHHHHhhCCC---C-CchhHHHHHHHHHhc
Q 005881 397 WGKQTHCCIVKPGFDSNVVIGSALVDMYAK-------CGRLN-------DARKVFDHLSS---K-NLVSWNTMLVGYAQH 458 (672)
Q Consensus 397 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~~ 458 (672)
.+..+++.+.... +.+..+|..++..+.+ .|+++ +|..+|++..+ | +...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 6667788877753 3456778888877775 68887 89999998763 3 466899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHH-hhccCChHH
Q 005881 459 GLGREALEIYSMMQENKIKPND--NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHL-FACRGQTRR 534 (672)
Q Consensus 459 g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~~~ 534 (672)
|++++|..+|+++++ +.|+. ..|..++..+.+.|++++|..+|++..+ ..| +...+...+.. +...|+.++
T Consensus 335 g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~---~~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp TCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CTTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCchHHHHHHHHHHHHHcCChhH
Confidence 999999999999999 46654 4788888888899999999999999873 344 33444333332 346899999
Q ss_pred HHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc----hHHHHHHHHHhcCChHHHHHHHHHH
Q 005881 535 AYEFIKS-SPIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTS----AHIMLSNVYAEANMWDETAKVRKIM 608 (672)
Q Consensus 535 A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~ 608 (672)
|.++|++ +...| ++..|..++..+...|+.+.|..+|++++...|.++. .|...+......|+.+.+.++.+++
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999985 33345 5788999999999999999999999999998876665 7778888888999999999999988
Q ss_pred hhCC
Q 005881 609 KEKS 612 (672)
Q Consensus 609 ~~~~ 612 (672)
.+.-
T Consensus 490 ~~~~ 493 (530)
T 2ooe_A 490 FTAF 493 (530)
T ss_dssp HHHT
T ss_pred HHHC
Confidence 7643
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=3.1e-15 Score=155.67 Aligned_cols=351 Identities=11% Similarity=0.003 Sum_probs=239.3
Q ss_pred CCChhHHHHHHhcCCC-CCcchHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhc----cCCch
Q 005881 225 CEKLDLASRVFSNIQL-PDLTAWSALIGGYAQ----LGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFAD----VKETI 295 (672)
Q Consensus 225 ~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~ 295 (672)
.++.++|...|+...+ .+...+..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 4445555555444322 233444445555555 556666666666665543 33333344444444 45666
Q ss_pred hHHHHHHHHHHhCCCCchHHHHHHHHHHHc----cCChHHHHHHHhhCCC-CCcccHHHHHHHHHh----cCChhHHHHH
Q 005881 296 GGRQLHSLIIKMGFSSFTFVANTVLDFYSK----CELLEESLKTFDEMDE-HDVVSWNALIAGHLA----SCHYGEAIEL 366 (672)
Q Consensus 296 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~ 366 (672)
+|...++...+.| +...+..|..+|.. .++.++|...|++..+ .+...+..+...|.. .+++++|++.
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 6666666666554 34445556666655 6677777777766543 455566666666766 6788888888
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHcC----cCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHh----cCCHHHHHHHHh
Q 005881 367 LKDMLFEGHCPNLYTYSNILNISSD----IPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAK----CGRLNDARKVFD 438 (672)
Q Consensus 367 ~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 438 (672)
|++..+.| +...+..+-..+.. .++.++|...++...+.+ +...+..+..+|.. .+++++|.+.|+
T Consensus 210 ~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~ 283 (490)
T 2xm6_A 210 YRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYR 283 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 88877654 33444444444543 677888888888877764 33455666667776 789999999998
Q ss_pred hCCC-CCchhHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC---cHHHHHHHHHHhHHh
Q 005881 439 HLSS-KNLVSWNTMLVGYAQH-----GLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIG---LVEEGWHYFNSMIRD 509 (672)
Q Consensus 439 ~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~ 509 (672)
...+ .+...+..+...|... +++++|+..|++..+.| +...+..+...+...| +.++|.+.|++..+.
T Consensus 284 ~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 284 KSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 8764 4566777888888877 89999999999999865 3455666666666655 789999999988742
Q ss_pred hCCCCchHHHHHHHHHhhc----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCC-
Q 005881 510 HGISPRMDHIASVVHLFAC----RGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKT----HKDLVLGRYAAEKILSTDPE- 580 (672)
Q Consensus 510 ~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~- 580 (672)
.++..+..|..+|.. .+++++|.+++++.-...++..+..+...+.. .+|.++|...|+++++.+|+
T Consensus 361 ----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 436 (490)
T 2xm6_A 361 ----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNL 436 (490)
T ss_dssp ----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCH
T ss_pred ----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCC
Confidence 467788889999988 89999999999874323467788888888887 89999999999999999854
Q ss_pred --CCchHHHHHHHHHh
Q 005881 581 --DTSAHIMLSNVYAE 594 (672)
Q Consensus 581 --~~~~~~~l~~~~~~ 594 (672)
++.+...++.++..
T Consensus 437 ~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 437 FGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHTTSCHH
T ss_pred cCCHHHHHHHHhcCHh
Confidence 67777777776654
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=1.1e-16 Score=153.13 Aligned_cols=267 Identities=10% Similarity=0.017 Sum_probs=185.3
Q ss_pred ccCChHHHHHHHhhCCCCCc----ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHH
Q 005881 325 KCELLEESLKTFDEMDEHDV----VSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQ 400 (672)
Q Consensus 325 ~~~~~~~a~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 400 (672)
..|++..|+..++.....++ ...-.+..+|...|++++|+..++. .-.|+..++..+...+...++.+.|.+
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 34555555555554443221 1223344555555555555554432 123344455555555555556666666
Q ss_pred HHHHHHhcCCCC-cccHHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 005881 401 THCCIVKPGFDS-NVVIGSALVDMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPN 479 (672)
Q Consensus 401 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 479 (672)
.++.+...+..| +...+..+...|...|++++|.+.+++ ..+...+..++..|.+.|++++|.+.|+++.+. .|+
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~ 162 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DED 162 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcC
Confidence 666555544323 344456677889999999999999998 567788999999999999999999999999985 566
Q ss_pred HHHH---HHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHh-CCCCC-CHHHHHHH
Q 005881 480 DNTF---IGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKS-SPIEP-NKVVWRCL 554 (672)
Q Consensus 480 ~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l 554 (672)
.... ..++..+...|++++|..+|+++.+. .+.+...++.++.++.+.|++++|.+.+++ +...| ++.+|..+
T Consensus 163 ~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l 240 (291)
T 3mkr_A 163 ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL 240 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 5321 12334445569999999999999864 244788899999999999999999999987 34456 67788888
Q ss_pred HHHHHhcCCHHH-HHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 005881 555 LSGCKTHKDLVL-GRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVR 605 (672)
Q Consensus 555 ~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 605 (672)
+..+...|+.++ +..+++++++++|+++.+ .++..+.+.++++..-|
T Consensus 241 ~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 241 VVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHHc
Confidence 888888998865 678999999999988754 34566666666665543
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=5.5e-17 Score=162.43 Aligned_cols=279 Identities=10% Similarity=-0.022 Sum_probs=218.0
Q ss_pred HHccCChHHHHH-HHhhCCC-----C--CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCc
Q 005881 323 YSKCELLEESLK-TFDEMDE-----H--DVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPA 394 (672)
Q Consensus 323 ~~~~~~~~~a~~-~~~~~~~-----~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 394 (672)
+...|++++|.. .|++... | +...+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334577888887 7775543 1 34568888888999999999999999988763 3355677778888889999
Q ss_pred hHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CchhHHH---------------HHHHHH
Q 005881 395 IEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSS--K-NLVSWNT---------------MLVGYA 456 (672)
Q Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~ 456 (672)
++.|...+..+.+.. +.+..++..+...|...|++++|.+.|+.+.. | +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 999999999888775 33667788888999999999999999988762 2 2222221 133344
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCCh
Q 005881 457 QHGLGREALEIYSMMQENKIKPN---DNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQT 532 (672)
Q Consensus 457 ~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 532 (672)
..|++++|+..|+++.+. .|+ ..++..+...+...|++++|...|+.+... .| +...+..++.++...|++
T Consensus 193 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~ 267 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQS 267 (368)
T ss_dssp HHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCH
T ss_pred hcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCH
Confidence 889999999999999985 454 678899999999999999999999998843 44 578899999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-----------CchHHHHHHHHHhcCChH
Q 005881 533 RRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPED-----------TSAHIMLSNVYAEANMWD 599 (672)
Q Consensus 533 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~ 599 (672)
++|.+.+++. ...| +...|..+...+...|++++|...+++++++.|++ ...|..++.+|...|+++
T Consensus 268 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 268 EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence 9999999863 3345 57788999999999999999999999999999877 788999999999999999
Q ss_pred HHHHHHHHH
Q 005881 600 ETAKVRKIM 608 (672)
Q Consensus 600 ~a~~~~~~~ 608 (672)
+|..++++.
T Consensus 348 ~A~~~~~~~ 356 (368)
T 1fch_A 348 AYGAADARD 356 (368)
T ss_dssp GHHHHHTTC
T ss_pred hHHHhHHHH
Confidence 999988743
No 25
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.73 E-value=3.1e-14 Score=148.07 Aligned_cols=352 Identities=14% Similarity=0.056 Sum_probs=286.0
Q ss_pred CCcchHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhc----cCCchhHHHHHHHHHHhCCCCc
Q 005881 241 PDLTAWSALIGGYAQ----LGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFAD----VKETIGGRQLHSLIIKMGFSSF 312 (672)
Q Consensus 241 ~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 312 (672)
.+...+..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++.++|.+.++...+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 355556666666776 899999999999998864 45566666667776 889999999999998876 5
Q ss_pred hHHHHHHHHHHHc----cCChHHHHHHHhhCCC-CCcccHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChHHHH
Q 005881 313 TFVANTVLDFYSK----CELLEESLKTFDEMDE-HDVVSWNALIAGHLA----SCHYGEAIELLKDMLFEGHCPNLYTYS 383 (672)
Q Consensus 313 ~~~~~~li~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~t~~ 383 (672)
...+..|...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5666778888888 7899999999998765 456677788888887 789999999999998875 455666
Q ss_pred HHHHHHcC----cCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHh----cCCHHHHHHHHhhCC-CCCchhHHHHHHH
Q 005881 384 NILNISSD----IPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAK----CGRLNDARKVFDHLS-SKNLVSWNTMLVG 454 (672)
Q Consensus 384 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~ 454 (672)
.+-..+.. .++.++|...+....+.+ +...+..+..+|.. .+++++|.++|+... ..+...+..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666665 899999999999998875 45567778888876 789999999999876 4566677888888
Q ss_pred HHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc-----CcHHHHHHHHHHhHHhhCCCCchHHHHHHHHH
Q 005881 455 YAQ----HGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHI-----GLVEEGWHYFNSMIRDHGISPRMDHIASVVHL 525 (672)
Q Consensus 455 ~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 525 (672)
|.. .+++++|++.|++..+.| +...+..+...+... +++++|...|++..+. .+...+..+..+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHH
Confidence 887 899999999999998865 345666677777666 8999999999988742 245677888888
Q ss_pred hhccC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHh----
Q 005881 526 FACRG---QTRRAYEFIKSSPIEPNKVVWRCLLSGCKT----HKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAE---- 594 (672)
Q Consensus 526 ~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---- 594 (672)
|...| +.++|.+++++.-...++..+..+...+.. .+++++|...++++.+.+ ++.++..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 88766 789999999874323578888889988888 899999999999999864 68899999999999
Q ss_pred cCChHHHHHHHHHHhhCCC
Q 005881 595 ANMWDETAKVRKIMKEKSL 613 (672)
Q Consensus 595 ~g~~~~a~~~~~~~~~~~~ 613 (672)
.+++++|.+.+++..+.+.
T Consensus 416 ~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCC
Confidence 8999999999999987663
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.72 E-value=1.3e-16 Score=159.47 Aligned_cols=259 Identities=10% Similarity=-0.037 Sum_probs=208.1
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHH
Q 005881 343 DVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVD 422 (672)
Q Consensus 343 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 422 (672)
+...|..+...+.+.|++++|++.|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44568888888999999999999999988763 2356778888888889999999999999888765 335677888999
Q ss_pred HHHhcCCHHHHHHHHhhCCC--CC-----------chhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHH
Q 005881 423 MYAKCGRLNDARKVFDHLSS--KN-----------LVSWNTMLVGYAQHGLGREALEIYSMMQENKIKP---NDNTFIGV 486 (672)
Q Consensus 423 ~~~~~g~~~~A~~~~~~~~~--~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~l 486 (672)
.|...|++++|.+.|+++.+ |+ ...+..+...+...|++++|+++|+++.+. .| +..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHH
Confidence 99999999999999988763 11 123344578889999999999999999985 44 46789999
Q ss_pred HHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 005881 487 LSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDL 564 (672)
Q Consensus 487 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 564 (672)
...+...|++++|...|+++.+.. +.+...+..++.+|...|++++|.+.+++. ...| +..+|..+...+...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 999999999999999999988432 336789999999999999999999999863 3445 477899999999999999
Q ss_pred HHHHHHHHHHhcCCCC------------CCchHHHHHHHHHhcCChHHHHHHHHH
Q 005881 565 VLGRYAAEKILSTDPE------------DTSAHIMLSNVYAEANMWDETAKVRKI 607 (672)
Q Consensus 565 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 607 (672)
++|...+++++++.|+ +...+..++.++...|+.+.+.++.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999998886 367789999999999999998887764
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=2.3e-14 Score=150.62 Aligned_cols=405 Identities=8% Similarity=0.023 Sum_probs=266.8
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 005881 141 NSISWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCASVLGACAVLGNLKVGMQIHSLVFKCALEFDKFVAMGLIN 220 (672)
Q Consensus 141 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 220 (672)
+...|..++. +.+.|++++|..+|+++.+. .+-+...|...+..+.+.|+++.|..+|+.+++.. |+...|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 5556777776 36677788888888887764 22345567777777777888888888888877654 46666666664
Q ss_pred -HhhcCCChhHHHH----HHhcCC------CCCcchHHHHHHHHHh---------cCChhHHHHHHHHHHHCCCCCCh--
Q 005881 221 -LYAKCEKLDLASR----VFSNIQ------LPDLTAWSALIGGYAQ---------LGKACEAIDLFVKMFSSGLMPSE-- 278 (672)
Q Consensus 221 -~~~~~g~~~~a~~----~~~~~~------~~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~-- 278 (672)
.....|+.+.|.+ +|+... .++...|...+....+ .|++++|..+|++.... |+.
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~ 164 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINI 164 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhH
Confidence 2334566666554 555431 1344567666665544 57778888888877762 332
Q ss_pred -hhHHHHHHHhhccCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhh-------CC------CCC-
Q 005881 279 -VTFSYVLGAFADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDE-------MD------EHD- 343 (672)
Q Consensus 279 -~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-------~~------~~~- 343 (672)
..|..........+. ..+ ..++. .+.+++..|..++.. +. .|+
T Consensus 165 ~~~~~~~~~~e~~~~~-~~~-------------------~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~ 222 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINI-HLA-------------------KKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQN 222 (530)
T ss_dssp HHHHHHHHHHHHHHCH-HHH-------------------HHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-
T ss_pred HHHHHHHHHHHHhhch-hHH-------------------HHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence 122111110000000 000 01110 122334445444432 11 111
Q ss_pred -------cccHHHHHHHHHhc----CCh----hHHHHHHHHHHhCCCCC-ChHHHHHHHHHHcC-------cCchH----
Q 005881 344 -------VVSWNALIAGHLAS----CHY----GEAIELLKDMLFEGHCP-NLYTYSNILNISSD-------IPAIE---- 396 (672)
Q Consensus 344 -------~~~~~~li~~~~~~----~~~----~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~-------~~~~~---- 396 (672)
...|...+.-.... ++. .++..+|++.... .| +...|......+.+ .|+++
T Consensus 223 ~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~ 300 (530)
T 2ooe_A 223 TPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL 300 (530)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccchhhhhh
Confidence 13454444332222 222 3777888888875 34 45566666666554 68877
Q ss_pred ---HHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCC--CCC-c-hhHHHHHHHHHhcCChHHHHHHHH
Q 005881 397 ---WGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLS--SKN-L-VSWNTMLVGYAQHGLGREALEIYS 469 (672)
Q Consensus 397 ---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-~-~~~~~li~~~~~~g~~~~A~~~~~ 469 (672)
.|..+++..++.-.+.+..++..++..+.+.|++++|..+|+++. .|+ . ..|..++..+.+.|+.++|.++|+
T Consensus 301 ~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 301 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 889999998874334567888999999999999999999999876 343 2 479999999999999999999999
Q ss_pred HHHHCCCCCC-HHHHHHHHHH-hhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhC----C
Q 005881 470 MMQENKIKPN-DNTFIGVLSA-CVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSS----P 543 (672)
Q Consensus 470 ~m~~~g~~p~-~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~ 543 (672)
+..+. .|+ ...|...... +...|++++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++. +
T Consensus 381 ~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 381 KARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 99985 343 2333332222 335899999999999988553 235789999999999999999999999863 3
Q ss_pred CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 005881 544 IEPN--KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPE 580 (672)
Q Consensus 544 ~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 580 (672)
..|+ ...|...+.....+|+.+.+..+++++.+..|+
T Consensus 457 ~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 457 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 3342 558888888889999999999999999999984
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.71 E-value=3.5e-16 Score=156.55 Aligned_cols=270 Identities=11% Similarity=-0.025 Sum_probs=146.9
Q ss_pred HHHHHHHhhccCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCCC---CCcccHHHHHHHHHhc
Q 005881 281 FSYVLGAFADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMDE---HDVVSWNALIAGHLAS 357 (672)
Q Consensus 281 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~ 357 (672)
+..+...+...|+++.|...++.+.+.. +.+..++..+..+|.+.|++++|...|+++.+ .+..++..+...|...
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 145 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNE 145 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 3333334444444444444444444332 22344455556666666666666666665432 3455667777777777
Q ss_pred CChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHH
Q 005881 358 CHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVF 437 (672)
Q Consensus 358 ~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 437 (672)
|++++|++.|+++.... |+........ +.... ...+ ...+..+...+ ..|++++|...|
T Consensus 146 g~~~~A~~~~~~~~~~~--~~~~~~~~~~------~~~~~-----------~~~~-~~~~~~~~~~~-~~~~~~~A~~~~ 204 (368)
T 1fch_A 146 SLQRQACEILRDWLRYT--PAYAHLVTPA------EEGAG-----------GAGL-GPSKRILGSLL-SDSLFLEVKELF 204 (368)
T ss_dssp TCHHHHHHHHHHHHHTS--TTTGGGCC---------------------------------CTTHHHH-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--cCcHHHHHHH------HHHhh-----------hhcc-cHHHHHHHHHh-hcccHHHHHHHH
Confidence 88888888887777653 3222111000 00000 0000 00001122222 556666666666
Q ss_pred hhCC--CC---CchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCC
Q 005881 438 DHLS--SK---NLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGI 512 (672)
Q Consensus 438 ~~~~--~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 512 (672)
+++. .| +..+|..+...|...|++++|+..|+++.... +.+..++..+...+...|++++|...|+++.+.
T Consensus 205 ~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 280 (368)
T 1fch_A 205 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--- 280 (368)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 6554 22 34566666666677777777777777666631 223456666666677777777777777666532
Q ss_pred CC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 005881 513 SP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP------------NKVVWRCLLSGCKTHKDLVLGRYAAEKILS 576 (672)
Q Consensus 513 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 576 (672)
.| +...+..++.+|.+.|++++|.+.+++. ...| ...+|..+..++...|+.++|..++++.++
T Consensus 281 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 281 QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 33 4566666777777777777777666542 1111 146677777777777777777777665543
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=7.8e-16 Score=147.31 Aligned_cols=245 Identities=10% Similarity=-0.009 Sum_probs=199.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCh--HHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcC
Q 005881 351 IAGHLASCHYGEAIELLKDMLFEGHCPNL--YTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCG 428 (672)
Q Consensus 351 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (672)
|.-....|+++.|+..+++.... .|+. .....+.+++...|+++.|...++. .-+|+...+..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34556789999999998876543 4543 3445667899999999999875533 24567778888999999999
Q ss_pred CHHHHHHHHhhCC----CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 005881 429 RLNDARKVFDHLS----SK-NLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYF 503 (672)
Q Consensus 429 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 503 (672)
+.++|.+.++++. .| +...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|...|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 24 455677788999999999999999987 466678888999999999999999999
Q ss_pred HHhHHhhCCCCchH---HHHHHHHHhhccCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 005881 504 NSMIRDHGISPRMD---HIASVVHLFACRGQTRRAYEFIKSS-P-IEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTD 578 (672)
Q Consensus 504 ~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 578 (672)
+.+.+. .|+.. ....++..+...|++++|.++|+++ . ..++...|+.+..++...|++++|+..++++++++
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999854 45532 2233445566679999999999874 2 23477889999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChHH-HHHHHHHHhh
Q 005881 579 PEDTSAHIMLSNVYAEANMWDE-TAKVRKIMKE 610 (672)
Q Consensus 579 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~ 610 (672)
|+++.++..++.++...|++++ +.++++++.+
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999986 5688888875
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=3.4e-15 Score=154.91 Aligned_cols=361 Identities=12% Similarity=-0.051 Sum_probs=189.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCC-ChhhHHHHHHHhhccCCchhHHHHHHHHHHhC------CC
Q 005881 245 AWSALIGGYAQLGKACEAIDLFVKMFSS-------GLMP-SEVTFSYVLGAFADVKETIGGRQLHSLIIKMG------FS 310 (672)
Q Consensus 245 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~ 310 (672)
.||.+...+...|++++|++.|++..+. ...| ...+|..+-.++...|++++|...++.+.+.. ..
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 3444444444445555554444443221 0111 22344555555555555555555555443320 00
Q ss_pred -CchHHHHHHHHHHHc--cCChHHHHHHHhhCCC--C-CcccHHHHHHH---HHhcCChhHHHHHHHHHHhCCCCCC-hH
Q 005881 311 -SFTFVANTVLDFYSK--CELLEESLKTFDEMDE--H-DVVSWNALIAG---HLASCHYGEAIELLKDMLFEGHCPN-LY 380 (672)
Q Consensus 311 -~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~--~-~~~~~~~li~~---~~~~~~~~~A~~~~~~m~~~g~~p~-~~ 380 (672)
....++..+..++.+ .+++++|...|++..+ | +...+..+... +...++.++|++.+++..+. .|+ ..
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~~~ 210 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQY 210 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSCHH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcchH
Confidence 112233333333333 3356666666666543 2 22333333332 33456666777777766654 332 23
Q ss_pred HHHHHHHHH----cCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCchhHHHHHH
Q 005881 381 TYSNILNIS----SDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLS---SKNLVSWNTMLV 453 (672)
Q Consensus 381 t~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 453 (672)
.+..+...+ ...++.++|.+.++...+... .+..++..+...|...|++++|...|++.. ..+..+|..+..
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 289 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGC 289 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 333332222 234566677777776665542 244556667777777777777777777665 223345555554
Q ss_pred HHHh-------------------cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCC
Q 005881 454 GYAQ-------------------HGLGREALEIYSMMQENKIKPN-DNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGIS 513 (672)
Q Consensus 454 ~~~~-------------------~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 513 (672)
.|.. .+.++.|...|++..+. .|+ ..++..+...+...|++++|...|++..+ ..
T Consensus 290 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~---~~ 364 (472)
T 4g1t_A 290 CYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFS---KE 364 (472)
T ss_dssp HHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH---SC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh---cC
Confidence 4432 12356788888887774 344 35677788888999999999999988773 23
Q ss_pred CchH----HHHHHHHH-hhccCChHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHH
Q 005881 514 PRMD----HIASVVHL-FACRGQTRRAYEFIKS-SPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIM 587 (672)
Q Consensus 514 p~~~----~~~~l~~~-~~~~g~~~~A~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 587 (672)
|+.. .+..+... +...|+.++|++.+++ +.+.|+...+.. ....+..++++.++.+|+++.++..
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~ 435 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHV 435 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4322 23333332 3467889999988875 445665443322 2345567788889999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCccCCceeEE
Q 005881 588 LSNVYAEANMWDETAKVRKIMKEKSLKKDTGCSWT 622 (672)
Q Consensus 588 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 622 (672)
++.+|...|++++|.+.+++..+.+.....+.+|+
T Consensus 436 LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 436 LAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 99999999999999999999988776555566664
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=1.1e-15 Score=152.72 Aligned_cols=231 Identities=12% Similarity=0.012 Sum_probs=193.6
Q ss_pred ChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCchhHHHHHHH
Q 005881 378 NLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLS---SKNLVSWNTMLVG 454 (672)
Q Consensus 378 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 454 (672)
+...+..+...+.+.|++++|...++.+.+.. +.+..++..+...|.+.|++++|.+.|+++. ..+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457778888999999999999999999875 3467788999999999999999999999886 3457799999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHH
Q 005881 455 YAQHGLGREALEIYSMMQENKIKPNDN-----------TFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVV 523 (672)
Q Consensus 455 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-----------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 523 (672)
|...|++++|++.|+++.+. .|+.. .+..+...+...|++++|...|+++.+.....++...+..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999883 45432 233457788999999999999999986533323678999999
Q ss_pred HHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHH
Q 005881 524 HLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDET 601 (672)
Q Consensus 524 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 601 (672)
.+|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|+..+++++++.|+++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999863 3344 6779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhC
Q 005881 602 AKVRKIMKEK 611 (672)
Q Consensus 602 ~~~~~~~~~~ 611 (672)
.+.++++.+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=1.6e-15 Score=148.85 Aligned_cols=258 Identities=8% Similarity=-0.088 Sum_probs=181.5
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHH
Q 005881 346 SWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYA 425 (672)
Q Consensus 346 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (672)
.+..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|+++.|...++.+.+.. +.+...+..+...|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34444455555555555555555555431 1133344444455555555555555555555442 223445556666666
Q ss_pred hcCCHHHHHHHHhhCCC---CCchhHHHH--------------HH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005881 426 KCGRLNDARKVFDHLSS---KNLVSWNTM--------------LV-GYAQHGLGREALEIYSMMQENKIKPNDNTFIGVL 487 (672)
Q Consensus 426 ~~g~~~~A~~~~~~~~~---~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 487 (672)
..|++++|.+.++.+.+ .+...+..+ .. .+...|++++|.+.++++.+.. +.+...+..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 67777777766666542 122222222 22 3667789999999999998853 34567888889
Q ss_pred HHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 005881 488 SACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDL 564 (672)
Q Consensus 488 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 564 (672)
..+...|++++|...++.+.+. .| +...+..++.++...|++++|.+.+++. ...| +...|..+...+...|++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 9999999999999999988743 34 5788999999999999999999999763 3334 577888999999999999
Q ss_pred HHHHHHHHHHhcCCCC------------CCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 005881 565 VLGRYAAEKILSTDPE------------DTSAHIMLSNVYAEANMWDETAKVRKIMK 609 (672)
Q Consensus 565 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 609 (672)
++|...++++++..|+ ++..+..++.+|...|++++|.+++++..
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999998 68899999999999999999999987543
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=1.4e-17 Score=174.88 Aligned_cols=147 Identities=13% Similarity=0.123 Sum_probs=125.4
Q ss_pred cchhhHHHHHHhcCCChhHHHHHhccCC-------CCCcchHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCcccHHHH
Q 005881 10 VITYNHLLLMYVKFSRINDAQKLFDEMP-------ERNVISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNYYTYVGA 82 (672)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 82 (672)
..|||+||++|++.|++++|.++|++|. .||+++||+||.+||+.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3589999999999999999999997763 499999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCh-hhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhhccCCC-----CcccHHHHHHHHHhcC
Q 005881 83 VSACASRGDA-RSGKEIHGRMYRSGLELNSHVSNCLINMYGKCGLLSSAQFVFDASLER-----NSISWVSLLSSYCQCG 156 (672)
Q Consensus 83 l~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~g 156 (672)
|.++++.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.+++..+..+ .+.+...|...|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 789999999999999999999999999888776666665554443321 2334455666666555
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=5.2e-15 Score=135.16 Aligned_cols=193 Identities=16% Similarity=0.131 Sum_probs=156.0
Q ss_pred CCcccHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 005881 411 DSNVVIGSALVDMYAKCGRLNDARKVFDHLSS---KNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPND-NTFIGV 486 (672)
Q Consensus 411 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l 486 (672)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+. .|+. ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45667778888899999999999999998763 45668889999999999999999999999984 5654 578888
Q ss_pred HHHhhcc-----------CcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCCCHHHHHH
Q 005881 487 LSACVHI-----------GLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEPNKVVWRC 553 (672)
Q Consensus 487 l~~~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 553 (672)
...+... |++++|+..|++..+ +.| +...+..+..+|...|++++|++.+++. ....++..|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8899999 999999999999884 356 5688999999999999999999999863 11268889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 005881 554 LLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIM 608 (672)
Q Consensus 554 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 608 (672)
+...+...|++++|...++++++++|+++..+..++.++...|++++|.+.+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998865
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=1.8e-16 Score=166.73 Aligned_cols=148 Identities=14% Similarity=0.141 Sum_probs=117.0
Q ss_pred cHHHHHHHHHHhhcCCChhHHHHHHhcCC-------CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHH
Q 005881 211 DKFVAMGLINLYAKCEKLDLASRVFSNIQ-------LPDLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSY 283 (672)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ 283 (672)
-..+|++||++|++.|++++|.++|+.|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34578888888888888888888886542 58999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCc-hhHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCCC-----CCcccHHHHHHHHHhc
Q 005881 284 VLGAFADVKET-IGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMDE-----HDVVSWNALIAGHLAS 357 (672)
Q Consensus 284 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~ 357 (672)
+|.++++.|+. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+.. +.+.+...|...|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d 285 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence 99999999985 78899999999999999999999998877666555444444333332 1133444455556554
Q ss_pred C
Q 005881 358 C 358 (672)
Q Consensus 358 ~ 358 (672)
+
T Consensus 286 ~ 286 (1134)
T 3spa_A 286 G 286 (1134)
T ss_dssp S
T ss_pred C
Confidence 4
No 36
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.62 E-value=3.8e-14 Score=139.06 Aligned_cols=273 Identities=11% Similarity=0.034 Sum_probs=145.2
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCchhHHHHHHHHHHhCCCCchHHHHHHHHH
Q 005881 243 LTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDF 322 (672)
Q Consensus 243 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 322 (672)
...|..+...+...|++++|..+|+++.+.. +.+...+ ..+..+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-----------------------------------~~l~~~ 64 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAW-----------------------------------RSLGLT 64 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH-----------------------------------HHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHH-----------------------------------HHHHHH
Confidence 3445566666777777777777777766542 1122333 334444
Q ss_pred HHccCChHHHHHHHhhCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHH-HHHHHHHHcCcCchHHH
Q 005881 323 YSKCELLEESLKTFDEMDE---HDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYT-YSNILNISSDIPAIEWG 398 (672)
Q Consensus 323 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a 398 (672)
+...|++++|...|+++.+ .+...+..+...+...|++++|++.++++... .|+... +..+...+
T Consensus 65 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~--------- 133 (327)
T 3cv0_A 65 QAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS--QPQYEQLGSVNLQAD--------- 133 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTTTC-----------------
T ss_pred HHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHH---------
Confidence 4445555555555544432 23445566666667777777777777776654 232211 11110000
Q ss_pred HHHHHHHHhcCCCCcccHHHHH-HH-HHHhcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005881 399 KQTHCCIVKPGFDSNVVIGSAL-VD-MYAKCGRLNDARKVFDHLS---SKNLVSWNTMLVGYAQHGLGREALEIYSMMQE 473 (672)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 473 (672)
|+......+ .. .+...|++++|.+.++++. ..+...+..+...+...|++++|.+.++++.+
T Consensus 134 -------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 200 (327)
T 3cv0_A 134 -------------VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVE 200 (327)
T ss_dssp -------------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 000000111 11 2444555555555555543 22344566666666666666666666666665
Q ss_pred CCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-----
Q 005881 474 NKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP----- 546 (672)
Q Consensus 474 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----- 546 (672)
.. +.+..++..+...+...|++++|...++++.+. .| +...+..++.+|.+.|++++|.+.+++. ...|
T Consensus 201 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 276 (327)
T 3cv0_A 201 LR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI---NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTP 276 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-
T ss_pred hC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccc
Confidence 32 223445666666666666666666666666532 23 4556666666666666666666666542 1122
Q ss_pred --------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 005881 547 --------NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDP 579 (672)
Q Consensus 547 --------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 579 (672)
+...|..+...+...|+.+.|...++++++..|
T Consensus 277 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 277 TGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp ----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred cccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 245666677777777777777777776655444
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=3e-14 Score=134.43 Aligned_cols=216 Identities=10% Similarity=0.047 Sum_probs=165.3
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHH
Q 005881 346 SWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYA 425 (672)
Q Consensus 346 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (672)
.|..+...+...|++++|+..|++..+.. . +...+..+...|.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~-----------------------------------~~~~~~~~~~~~~ 49 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--K-----------------------------------DITYLNNRAAAEY 49 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--C-----------------------------------CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--c-----------------------------------cHHHHHHHHHHHH
Confidence 44555556666666666666666665543 3 3444455566666
Q ss_pred hcCCHHHHHHHHhhCCC--C----C----chhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCc
Q 005881 426 KCGRLNDARKVFDHLSS--K----N----LVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGL 495 (672)
Q Consensus 426 ~~g~~~~A~~~~~~~~~--~----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 495 (672)
..|++++|.+.|+...+ | + ...|..+...|...|++++|++.|++... +.|+.. .+...|+
T Consensus 50 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~~~ 120 (258)
T 3uq3_A 50 EKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKLRN 120 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHHhH
Confidence 66666666666665542 1 1 45778888888899999999999999888 456643 3556688
Q ss_pred HHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005881 496 VEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAE 572 (672)
Q Consensus 496 ~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 572 (672)
+++|...++.+.. ..| +...+..++..+...|++++|.+.+++. ...| +...|..+...+...|++++|...++
T Consensus 121 ~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 121 AEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 8999999988773 345 4678888999999999999999998763 2334 57788889999999999999999999
Q ss_pred HHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 573 KILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 573 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
++++..|+++..+..++.+|...|++++|.+.+++..+
T Consensus 198 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998875
No 38
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.60 E-value=2.2e-13 Score=141.25 Aligned_cols=382 Identities=11% Similarity=-0.031 Sum_probs=221.7
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHHh-----c--CCC-cHHHHHHHHHHhhcCCChhHHHHHHhcCCC------
Q 005881 175 ISEFSCASVLGACAVLGNLKVGMQIHSLVFKC-----A--LEF-DKFVAMGLINLYAKCEKLDLASRVFSNIQL------ 240 (672)
Q Consensus 175 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~------ 240 (672)
.....|+.+-..+...|+.++|.+.+++.++. + ..| ...+|+.+...|...|++++|...+++..+
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34557888888888999999999999887653 1 122 345788888999999999999888776531
Q ss_pred ----C-CcchHHHHHHHHHh--cCChhHHHHHHHHHHHCCCCCChhh-HHHHHH---HhhccCCchhHHHHHHHHHHhCC
Q 005881 241 ----P-DLTAWSALIGGYAQ--LGKACEAIDLFVKMFSSGLMPSEVT-FSYVLG---AFADVKETIGGRQLHSLIIKMGF 309 (672)
Q Consensus 241 ----~-~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~t-~~~ll~---~~~~~~~~~~a~~~~~~~~~~~~ 309 (672)
+ ...++..+..++.. .+++++|+..|++..+. .|+... +..+.. .+...++.+.|.+.++..++..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 1 12344444444444 45688999999988775 455433 222222 2345677788888888887765
Q ss_pred CCchHHHHHHHHHHH----ccCChHHHHHHHhhCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-HH
Q 005881 310 SSFTFVANTVLDFYS----KCELLEESLKTFDEMDE---HDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNL-YT 381 (672)
Q Consensus 310 ~~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~t 381 (672)
+.+..++..+...+. ..+++++|.+.+++... .+...+..+...|...|++++|+..+++..+. .|+. ..
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHH
Confidence 233444444444443 34667788888877543 45567788888888999999999999888765 4543 33
Q ss_pred HHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhc
Q 005881 382 YSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLS---SKNLVSWNTMLVGYAQH 458 (672)
Q Consensus 382 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 458 (672)
+..+..++...+.. ..... ...........+..+.|...|+... ..+..+|..+...|...
T Consensus 284 ~~~lg~~y~~~~~~---------~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQ---------VMNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH---------hhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHh
Confidence 33333222111000 00000 0001111112234667777777664 45566889999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHH
Q 005881 459 GLGREALEIYSMMQENKIKPNDN--TFIGVLS-ACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRA 535 (672)
Q Consensus 459 g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 535 (672)
|++++|++.|++.++....|... .+..+.. .....|+.++|+..|++.. .+.|+........ ..+
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~~~~~~~---------~~l 415 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSREKEKMK---------DKL 415 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCHHHHHHH---------HHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccHHHHHHH---------HHH
Confidence 99999999999999854333222 2233332 2357799999999999887 4566543322222 222
Q ss_pred HHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHH
Q 005881 536 YEFIKS-SPIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLS 589 (672)
Q Consensus 536 ~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 589 (672)
.+++++ +...| +..+|..+...+...|++++|+..|+++++++|.+|.+...++
T Consensus 416 ~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 416 QKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 333322 12234 5668999999999999999999999999999999888776654
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=5.8e-14 Score=132.43 Aligned_cols=236 Identities=11% Similarity=0.040 Sum_probs=174.0
Q ss_pred hHHHHHHHHHHHccCChHHHHHHHhhCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CChHHHHHHHHH
Q 005881 313 TFVANTVLDFYSKCELLEESLKTFDEMDE--HDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHC--PNLYTYSNILNI 388 (672)
Q Consensus 313 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~ 388 (672)
...+..+...+...|++++|...|++..+ .+...|..+...+...|++++|++.+++..+.... |+...
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~------- 77 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKV------- 77 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH-------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHH-------
Confidence 45678888999999999999999987643 66778899999999999999999999998764211 11100
Q ss_pred HcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCchhHHHHHHHHHhcCChHHHHH
Q 005881 389 SSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSS--KNLVSWNTMLVGYAQHGLGREALE 466 (672)
Q Consensus 389 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~ 466 (672)
...++..+...|...|++++|.+.|++..+ |+ ...+...|++++|.+
T Consensus 78 ------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 78 ------------------------ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELK 126 (258)
T ss_dssp ------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHH
Confidence 023345566666666777777776666552 33 234556677888888
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhC-CC
Q 005881 467 IYSMMQENKIKPND-NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSS-PI 544 (672)
Q Consensus 467 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 544 (672)
.++++... .|+. ..+..+...+...|++++|...++.+.+.. +.+...+..++.+|.+.|++++|.+.+++. ..
T Consensus 127 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 127 KAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 88888874 4444 467777888888888888888888887432 235677888888888888888888888753 23
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC------CCCCchHHHHHH
Q 005881 545 EP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTD------PEDTSAHIMLSN 590 (672)
Q Consensus 545 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~ 590 (672)
.| +...|..+...+...|++++|...+++++++. |++...+..+..
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 34 56788888888999999999999999999988 776666655544
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.56 E-value=1.4e-13 Score=131.29 Aligned_cols=241 Identities=8% Similarity=-0.056 Sum_probs=182.2
Q ss_pred hcCChhHHHHHHHHHHhCCCC--C-ChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHH
Q 005881 356 ASCHYGEAIELLKDMLFEGHC--P-NLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLND 432 (672)
Q Consensus 356 ~~~~~~~A~~~~~~m~~~g~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 432 (672)
..|++++|++.|+++.+.... | +...+..+...+...|++++|...+..+.+... .+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 346677777777777765321 1 344566666677777888888888777776642 356677888899999999999
Q ss_pred HHHHHhhCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHh
Q 005881 433 ARKVFDHLS---SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRD 509 (672)
Q Consensus 433 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 509 (672)
|.+.|+++. ..+...|..+...|...|++++|.+.|+++.+ +.|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999999876 34577899999999999999999999999998 4566665555556667789999999999887744
Q ss_pred hCCCCchHHHHHHHHHhhccCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 005881 510 HGISPRMDHIASVVHLFACRGQTRRAYEFIKSS-PIEPN-----KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTS 583 (672)
Q Consensus 510 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 583 (672)
. +++...+ .++..+...++.++|.+.+++. ...|+ ...|..+...+...|++++|...++++++++|++..
T Consensus 174 ~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 S--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp S--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred C--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 2 3343444 4777788888889999998763 33332 467888888999999999999999999999997754
Q ss_pred hHHHHHHHHHhcCChHHHHHHH
Q 005881 584 AHIMLSNVYAEANMWDETAKVR 605 (672)
Q Consensus 584 ~~~~l~~~~~~~g~~~~a~~~~ 605 (672)
. .+.++...|++++|.+.+
T Consensus 251 ~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 E---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHhhHHHH
Confidence 4 466788889999988776
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.55 E-value=2.4e-13 Score=129.41 Aligned_cols=238 Identities=12% Similarity=0.010 Sum_probs=131.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCC-ChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCc--ccHHHHHHHHHHhcC
Q 005881 352 AGHLASCHYGEAIELLKDMLFEGHCP-NLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSN--VVIGSALVDMYAKCG 428 (672)
Q Consensus 352 ~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g 428 (672)
..+...|++++|+..|++..+. .| +...+..+...+...|+++.|...+..+.+....++ ...+..+...|...|
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAK--KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHT--TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 3334444444444444444432 12 112333333344444444444444444443211111 112455666666666
Q ss_pred CHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCcHHHHHHHHH
Q 005881 429 RLNDARKVFDHLS---SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPND-NTFIGVLSACVHIGLVEEGWHYFN 504 (672)
Q Consensus 429 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~ 504 (672)
++++|.+.|++.. ..+...|..+...|...|++++|++.|++..+. .|+. ..+..+...+...+++++|...|+
T Consensus 89 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666654 234456666777777777777777777776664 3333 344444423334457777777777
Q ss_pred HhHHhhCCCC-chHHHHHHHHHhhccCC---hHHHHHHHHhC----CCCCC------HHHHHHHHHHHHhcCCHHHHHHH
Q 005881 505 SMIRDHGISP-RMDHIASVVHLFACRGQ---TRRAYEFIKSS----PIEPN------KVVWRCLLSGCKTHKDLVLGRYA 570 (672)
Q Consensus 505 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~~~~~g~~~~a~~~ 570 (672)
.+.+. .| +...+..+..++...|+ +++|...+++. ...|+ ..+|..+...+...|++++|...
T Consensus 167 ~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 167 KVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66632 33 34556666666666665 55565555432 11233 24667777888899999999999
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHhcC
Q 005881 571 AEKILSTDPEDTSAHIMLSNVYAEAN 596 (672)
Q Consensus 571 ~~~~~~~~p~~~~~~~~l~~~~~~~g 596 (672)
++++++++|+++.++..+..+....+
T Consensus 244 ~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 244 WKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHhcCccHHHHHHHhhhhhcccc
Confidence 99999999999888877766655443
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.53 E-value=1.1e-12 Score=134.02 Aligned_cols=366 Identities=10% Similarity=0.050 Sum_probs=202.2
Q ss_pred ccCChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCCh---hHHHHHHhcCCCCCcchHHHHHHHHHhcC-----Chh
Q 005881 189 VLGNLKVGMQIHSLVFKCALEFDKFVAMGLINLYAKCEKL---DLASRVFSNIQLPDLTAWSALIGGYAQLG-----KAC 260 (672)
Q Consensus 189 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~ 260 (672)
+.|++++|.+++....+.|. ...+..|..+|...|+. ++|...|+...+.+...+..+...+...+ +++
T Consensus 15 ~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~ 91 (452)
T 3e4b_A 15 KRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHH 91 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHH
T ss_pred hCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHH
Confidence 34444555555555444432 11222333444445555 77777777766556666666666455554 677
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCc---hhHHHHHHHHHHhCCCCchHHHHHHHHHHHccC----ChHHHH
Q 005881 261 EAIDLFVKMFSSGLMPSEVTFSYVLGAFADVKET---IGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCE----LLEESL 333 (672)
Q Consensus 261 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~ 333 (672)
+|+..|++..+.|... .+..+-..+...+.. ..+.+.+....+.|. ......|...|...+ ..+.+.
T Consensus 92 ~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 92 EAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred HHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHHHHH
Confidence 8888888888766433 344444444443332 334444444444443 334455666666666 344555
Q ss_pred HHHhhCCCCCcccHHHHHHHHHhcC---ChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCC
Q 005881 334 KTFDEMDEHDVVSWNALIAGHLASC---HYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGF 410 (672)
Q Consensus 334 ~~~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 410 (672)
.+++.....++..+..|...|...| +.++|++.|++..+.|.. +...+
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~---------------------------- 216 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRV---------------------------- 216 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHH----------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHH----------------------------
Confidence 5666666666667777777777777 777777777777766522 22221
Q ss_pred CCcccHHHHHHHHHHhc----CCHHHHHHHHhhCCCCCchhHHHHHHH-H--HhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 005881 411 DSNVVIGSALVDMYAKC----GRLNDARKVFDHLSSKNLVSWNTMLVG-Y--AQHGLGREALEIYSMMQENKIKPNDNTF 483 (672)
Q Consensus 411 ~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 483 (672)
..|..+|... +++++|.+.|+.....++..+..|... | ...+++++|++.|++..+.| +...+
T Consensus 217 -------~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~ 286 (452)
T 3e4b_A 217 -------DSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAE 286 (452)
T ss_dssp -------HHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred -------HHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 2233333222 566677777766653344556666655 3 35678888888888888766 45555
Q ss_pred HHHHHHhhccC-----cHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhc----cCChHHHHHHHHhCCCCCCHHHHHHH
Q 005881 484 IGVLSACVHIG-----LVEEGWHYFNSMIRDHGISPRMDHIASVVHLFAC----RGQTRRAYEFIKSSPIEPNKVVWRCL 554 (672)
Q Consensus 484 ~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l 554 (672)
..+...|. .| ++++|...|++.. .-++..+..|..+|.. ..+.++|.++|++.-...++.....|
T Consensus 287 ~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~L 360 (452)
T 3e4b_A 287 LLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAI 360 (452)
T ss_dssp HHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHH
Confidence 55665555 45 8888888887553 3356777777777766 44888899888764222344455555
Q ss_pred HHHHHh----cCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHH--hcCChHHHHHHHHHHhh
Q 005881 555 LSGCKT----HKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYA--EANMWDETAKVRKIMKE 610 (672)
Q Consensus 555 ~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~ 610 (672)
...|.. ..|.++|...++++.+.++. .+...+..+.. ..++.++|.++.++..+
T Consensus 361 g~~y~~G~g~~~d~~~A~~~~~~A~~~g~~--~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 361 AQLFSQGKGTKPDPLNAYVFSQLAKAQDTP--EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHSCTTBCCCHHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 555543 45899999999999887753 34444444433 33456677777776554
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.52 E-value=9.5e-13 Score=123.59 Aligned_cols=197 Identities=11% Similarity=0.005 Sum_probs=163.9
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 005881 414 VVIGSALVDMYAKCGRLNDARKVFDHLS---SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSAC 490 (672)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 490 (672)
...+..+...+...|++++|.+.|+++. ..+...|..+...|...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4556677778888899999998888775 3456688888899999999999999999988853 33556788888889
Q ss_pred hccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 005881 491 VHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLG 567 (672)
Q Consensus 491 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 567 (672)
...|++++|..+++++.. .+..| +...+..++.++...|++++|.+.+++. ...| +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999998874 22455 4678888999999999999999998763 2334 577888888899999999999
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 005881 568 RYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKS 612 (672)
Q Consensus 568 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 612 (672)
...++++++..|++...+..++.+|...|++++|.+.++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999887643
No 44
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.50 E-value=1.4e-12 Score=133.27 Aligned_cols=343 Identities=8% Similarity=-0.021 Sum_probs=224.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCc---hhHHHHHHHHHHhCCCCchHHHHHHHHHHHc
Q 005881 249 LIGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVKET---IGGRQLHSLIIKMGFSSFTFVANTVLDFYSK 325 (672)
Q Consensus 249 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 325 (672)
+...+.+.|++++|+.+|++..+.|- ++ .+..+-..+...|+. ++|...++...+. ++..+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~-~~--A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY-SE--AQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC-CT--GGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 56677889999999999999988763 32 233333444556666 8899998888755 44455566664544
Q ss_pred cC-----ChHHHHHHHhhCCC-CCcccHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchH
Q 005881 326 CE-----LLEESLKTFDEMDE-HDVVSWNALIAGHLASCHYG---EAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIE 396 (672)
Q Consensus 326 ~~-----~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 396 (672)
.+ +.++|...|++..+ .+...+..|...|...+..+ ++.+.+......|. ......+-..+...+.++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcc
Confidence 44 67889998888765 35557888888888776544 44555555554443 334444555555556454
Q ss_pred HHHHHHHHHHhcCCCCcccHHHHHHHHHHhcC---CHHHHHHHHhhCCC---CCchhHHHHHHHHHhc----CChHHHHH
Q 005881 397 WGKQTHCCIVKPGFDSNVVIGSALVDMYAKCG---RLNDARKVFDHLSS---KNLVSWNTMLVGYAQH----GLGREALE 466 (672)
Q Consensus 397 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~~ 466 (672)
.+........+.-...++..+..|..+|.+.| +.++|.+.|+...+ ++...+..+...|... +++++|++
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 44444333333322334447888889999999 89999999988763 3333446677777554 68999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH-h--hccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccC-----ChHHHHHH
Q 005881 467 IYSMMQENKIKPNDNTFIGVLSA-C--VHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRG-----QTRRAYEF 538 (672)
Q Consensus 467 ~~~~m~~~g~~p~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~ 538 (672)
.|++.. .| +...+..+... + ...+++++|...|++..+ .+ +...+..|..+|. .| ++++|.++
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 999987 33 33445555554 3 568999999999998873 23 6677788888887 55 99999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHh----cCChHHHHHHHHHHhh
Q 005881 539 IKSSPIEPNKVVWRCLLSGCKT----HKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAE----ANMWDETAKVRKIMKE 610 (672)
Q Consensus 539 ~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 610 (672)
|++.- ..++..+..+...|.. ..|.++|...|+++.+. .++.+...|+.+|.. ..+.++|...+++..+
T Consensus 310 ~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 310 FEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 99877 5577788777776665 34999999999999874 468889999999986 4589999999999887
Q ss_pred CCC
Q 005881 611 KSL 613 (672)
Q Consensus 611 ~~~ 613 (672)
.|.
T Consensus 387 ~g~ 389 (452)
T 3e4b_A 387 QDT 389 (452)
T ss_dssp TCC
T ss_pred CCC
Confidence 765
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.50 E-value=1.6e-12 Score=119.63 Aligned_cols=197 Identities=14% Similarity=0.034 Sum_probs=162.3
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005881 413 NVVIGSALVDMYAKCGRLNDARKVFDHLS---SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSA 489 (672)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 489 (672)
+...+..+...+...|++++|.+.|+.+. ..+...|..+...|...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 44556777888888899999998888765 3456688888899999999999999999988853 3455678888888
Q ss_pred hhcc-CcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 005881 490 CVHI-GLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLV 565 (672)
Q Consensus 490 ~~~~-g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 565 (672)
+... |++++|...++.+.+ .+..| +...+..++.++...|++++|.+.+++. ...| +...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 9999 999999999998874 22344 3577888999999999999999998763 2334 5778888888899999999
Q ss_pred HHHHHHHHHhcCCC-CCCchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 005881 566 LGRYAAEKILSTDP-EDTSAHIMLSNVYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 566 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 611 (672)
+|...++++++..| +++..+..++.++...|+.++|...++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999999999 88899999999999999999999999988653
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.49 E-value=1.1e-12 Score=129.75 Aligned_cols=241 Identities=10% Similarity=0.033 Sum_probs=168.3
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hHHHHHHHHHHcCcCc-hHHHHHHHHHHHhcCCCCcccHHHHHHHH
Q 005881 346 SWNALIAGHLASCHYGEAIELLKDMLFEGHCPN-LYTYSNILNISSDIPA-IEWGKQTHCCIVKPGFDSNVVIGSALVDM 423 (672)
Q Consensus 346 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 423 (672)
.|+.+...+.+.|++++|++.+++.+.. .|+ ...|..+-.++...|+ +++|...++.+++.... +...|..+..+
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 4555555566666666666666666653 342 3344444455555554 66666666666554422 45566777778
Q ss_pred HHhcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhc-cCcHHH
Q 005881 424 YAKCGRLNDARKVFDHLS---SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPN-DNTFIGVLSACVH-IGLVEE 498 (672)
Q Consensus 424 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~-~g~~~~ 498 (672)
+.+.|++++|...|+++. ..+...|..+..++...|++++|+..|+++++. .|+ ...|..+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence 888888888888888776 345678888888888889999999999988884 454 4577778777777 555466
Q ss_pred H-----HHHHHHhHHhhCCCC-chHHHHHHHHHhhccC--ChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-------
Q 005881 499 G-----WHYFNSMIRDHGISP-RMDHIASVVHLFACRG--QTRRAYEFIKSSPIEP-NKVVWRCLLSGCKTHK------- 562 (672)
Q Consensus 499 a-----~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g------- 562 (672)
| +..|++.+. +.| +...|..+..+|...| ++++|.+.++++...| +...+..+...+...|
T Consensus 254 A~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 6 477777763 356 4677888888888877 5888888887765555 4557777777777653
Q ss_pred -C-HHHHHHHHHHH-hcCCCCCCchHHHHHHHHHh
Q 005881 563 -D-LVLGRYAAEKI-LSTDPEDTSAHIMLSNVYAE 594 (672)
Q Consensus 563 -~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 594 (672)
+ .++|+.+++++ ++++|.....|..++..+..
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 2 58899999998 89999888888877776654
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.49 E-value=7.5e-12 Score=119.01 Aligned_cols=224 Identities=10% Similarity=-0.053 Sum_probs=153.3
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHH
Q 005881 343 DVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVD 422 (672)
Q Consensus 343 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 422 (672)
+..++..+...+...|++++|++.|++..+.+ +. ..+..+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~-----------------------------------~a~~~lg~ 46 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---EN-----------------------------------SGCFNLGV 46 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CH-----------------------------------HHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CH-----------------------------------HHHHHHHH
Confidence 34455666666777777777777777766521 12 22334445
Q ss_pred HHHh----cCCHHHHHHHHhhCC-CCCchhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc-
Q 005881 423 MYAK----CGRLNDARKVFDHLS-SKNLVSWNTMLVGYAQ----HGLGREALEIYSMMQENKIKPNDNTFIGVLSACVH- 492 (672)
Q Consensus 423 ~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~- 492 (672)
.|.. .+++++|.+.|++.. ..+...+..+...|.. .+++++|++.|++..+.+ +...+..+...+..
T Consensus 47 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 47 LYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred HHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 5555 666666666666654 2345566667777777 777777777777777754 55666667777776
Q ss_pred ---cCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhc----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 005881 493 ---IGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFAC----RGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKT----H 561 (672)
Q Consensus 493 ---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~ 561 (672)
.+++++|...|++..+. + +...+..+..+|.. .+++++|.+.+++.-...+...+..+...+.. .
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 77888888887777632 2 45566677777776 77888888877653212355667777777777 8
Q ss_pred CCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHh----cCChHHHHHHHHHHhhCCC
Q 005881 562 KDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAE----ANMWDETAKVRKIMKEKSL 613 (672)
Q Consensus 562 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 613 (672)
+++++|...++++++.+| +..+..++.+|.. .+++++|.+.+++..+.+.
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 888888888888888765 6778888888888 8888888888888766543
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.48 E-value=7e-13 Score=123.68 Aligned_cols=196 Identities=11% Similarity=0.085 Sum_probs=142.2
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005881 413 NVVIGSALVDMYAKCGRLNDARKVFDHLSS---KNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSA 489 (672)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 489 (672)
....+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|++.|+++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 445556677777888888888888887752 355677888888888999999999998888752 3355677888888
Q ss_pred hhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 005881 490 CVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLG 567 (672)
Q Consensus 490 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 567 (672)
+...|++++|...++++.+.. +.+...+..++..+.+.|++++|.+.+++. ...| +...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 888899999999998887432 235677888888899999999999888763 2233 567788888888899999999
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 005881 568 RYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 568 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 611 (672)
...++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99999999999988889999999999999999999999988763
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.47 E-value=2.8e-12 Score=113.73 Aligned_cols=164 Identities=15% Similarity=0.096 Sum_probs=138.3
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHH
Q 005881 444 NLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPND-NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIAS 521 (672)
Q Consensus 444 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 521 (672)
+...|..+...|...|++++|++.|++.++. .|+. .++..+..++.+.|++++|...+...... .| +...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHH
Confidence 4567888888899999999999999998884 5554 57888888889999999999999887743 34 5677778
Q ss_pred HHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChH
Q 005881 522 VVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWD 599 (672)
Q Consensus 522 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 599 (672)
+...+...+++++|.+.+++. ...| +...+..+...+...|++++|+..++++++++|+++.++..++.+|.+.|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 888889999999999888753 3344 56788888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCC
Q 005881 600 ETAKVRKIMKEKS 612 (672)
Q Consensus 600 ~a~~~~~~~~~~~ 612 (672)
+|.+.+++..+.+
T Consensus 159 ~A~~~~~~al~~~ 171 (184)
T 3vtx_A 159 EAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCC
Confidence 9999999987644
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.47 E-value=2.3e-12 Score=127.34 Aligned_cols=222 Identities=10% Similarity=0.090 Sum_probs=187.3
Q ss_pred HHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCC-HHHHHHHHhhCC---CCCchhHHHHHHHH
Q 005881 380 YTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGR-LNDARKVFDHLS---SKNLVSWNTMLVGY 455 (672)
Q Consensus 380 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~~~ 455 (672)
..|..+-..+...|++++|...++.+++... .+...|+.+...+...|+ +++|+..|+++. ..+...|+.+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3455666677889999999999999998763 356778889999999997 999999999987 34667999999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhc-cCCh
Q 005881 456 AQHGLGREALEIYSMMQENKIKPN-DNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFAC-RGQT 532 (672)
Q Consensus 456 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-~g~~ 532 (672)
...|++++|+..|+++++. .|+ ...|..+..++...|++++|+..|+++++ +.| +...|..+..+|.+ .|..
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999994 555 46899999999999999999999999984 356 67889999999999 6666
Q ss_pred HHH-----HHHHHh-CCCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcC-------
Q 005881 533 RRA-----YEFIKS-SPIEP-NKVVWRCLLSGCKTHK--DLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEAN------- 596 (672)
Q Consensus 533 ~~A-----~~~~~~-~~~~p-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 596 (672)
++| ++.+++ +.+.| +...|..+...+...| ++++|...++++ +.+|+++.++..++++|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 466654 34566 5668888888888888 689999999998 999999999999999999975
Q ss_pred --ChHHHHHHHHHH
Q 005881 597 --MWDETAKVRKIM 608 (672)
Q Consensus 597 --~~~~a~~~~~~~ 608 (672)
..++|.++++++
T Consensus 331 ~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 331 EDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 358999999988
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.47 E-value=9.6e-12 Score=118.27 Aligned_cols=225 Identities=8% Similarity=-0.108 Sum_probs=166.1
Q ss_pred chHHHHHHHHHHHccCChHHHHHHHhhCCCC-CcccHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChHHHHHHH
Q 005881 312 FTFVANTVLDFYSKCELLEESLKTFDEMDEH-DVVSWNALIAGHLA----SCHYGEAIELLKDMLFEGHCPNLYTYSNIL 386 (672)
Q Consensus 312 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll 386 (672)
+...+..+...|...|++++|...|++..++ +...+..+...|.. .+++++|++.|++..+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~---- 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC---- 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH----
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH----
Confidence 5667778888999999999999999987664 45677788888888 999999999999988764 33333
Q ss_pred HHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHh----cCCHHHHHHHHhhCC-CCCchhHHHHHHHHHh----
Q 005881 387 NISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAK----CGRLNDARKVFDHLS-SKNLVSWNTMLVGYAQ---- 457 (672)
Q Consensus 387 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~---- 457 (672)
..+...|.. .+++++|.+.|++.. ..+...+..+...|..
T Consensus 78 -------------------------------~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~ 126 (273)
T 1ouv_A 78 -------------------------------HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVV 126 (273)
T ss_dssp -------------------------------HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSS
T ss_pred -------------------------------HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCc
Confidence 334444444 566666666666554 2345566777777777
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----cCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhc----c
Q 005881 458 HGLGREALEIYSMMQENKIKPNDNTFIGVLSACVH----IGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFAC----R 529 (672)
Q Consensus 458 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 529 (672)
.+++++|++.|++..+.+ +...+..+...+.. .+++++|...|++..+. .+...+..+..+|.. .
T Consensus 127 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSC
T ss_pred ccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCC
Confidence 788888888888888754 44556666666766 78888888888877642 245677778888888 8
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCC
Q 005881 530 GQTRRAYEFIKSSPIEPNKVVWRCLLSGCKT----HKDLVLGRYAAEKILSTDPED 581 (672)
Q Consensus 530 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~ 581 (672)
+++++|.+.+++.-...+...+..+...+.. .+++++|...++++++++|++
T Consensus 200 ~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 200 KNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 8888888888763212236677777788887 899999999999999998843
No 52
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.46 E-value=4.1e-13 Score=138.16 Aligned_cols=190 Identities=7% Similarity=-0.052 Sum_probs=162.4
Q ss_pred cccHHHHHHHHHHhcCCH-HHHHHHHhhCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005881 413 NVVIGSALVDMYAKCGRL-NDARKVFDHLS---SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLS 488 (672)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 488 (672)
+...+..+...|...|++ ++|.+.|++.. ..+...|..+...|...|++++|.+.|++..+ +.|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHHH
Confidence 455566677777778888 88888887765 33466889999999999999999999999998 4688788888999
Q ss_pred Hhhcc---------CcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhcc--------CChHHHHHHHHhC-CCCC---
Q 005881 489 ACVHI---------GLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACR--------GQTRRAYEFIKSS-PIEP--- 546 (672)
Q Consensus 489 ~~~~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p--- 546 (672)
.+... |++++|+..|++..+. .| +...|..++.+|... |++++|.+.|++. ...|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 99999 9999999999998843 45 578899999999988 9999999999763 3455
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHH
Q 005881 547 -NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKI 607 (672)
Q Consensus 547 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 607 (672)
+...|..+...+...|++++|...++++++++|+++.++..++.++...|++++|.+.+.+
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6778999999999999999999999999999999999999999999999999999976543
No 53
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.45 E-value=4e-12 Score=120.87 Aligned_cols=226 Identities=9% Similarity=-0.005 Sum_probs=182.0
Q ss_pred HHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCch----hHHHHHHHH
Q 005881 382 YSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSS--KNLV----SWNTMLVGY 455 (672)
Q Consensus 382 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~li~~~ 455 (672)
+......+...|+++.|...+..+.+... .+...+..+...|...|++++|.+.|+...+ ++.. .|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 44455678889999999999999988653 3455788889999999999999999998764 3332 488899999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHH
Q 005881 456 AQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRR 534 (672)
Q Consensus 456 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 534 (672)
...|++++|++.|++..+.. +.+...+..+...+...|++++|...|++.. ...| +...+..++..+...+++++
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI---RPTTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC---CSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHh---hcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999852 3344788999999999999999999999887 4456 56778888834444569999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHhcCC---CCC-----CchHHHHHHHHHhcCChHHH
Q 005881 535 AYEFIKSS-PIEP-NKVVWRCLLSGCKTHKD---LVLGRYAAEKILSTD---PED-----TSAHIMLSNVYAEANMWDET 601 (672)
Q Consensus 535 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~a 601 (672)
|.+.+++. ...| +...+..+...+...|+ .++|...+++++++. |+. ..++..++.+|...|++++|
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999763 3445 46677777788887788 888999999998875 432 25788899999999999999
Q ss_pred HHHHHHHhhCC
Q 005881 602 AKVRKIMKEKS 612 (672)
Q Consensus 602 ~~~~~~~~~~~ 612 (672)
.+.+++..+..
T Consensus 241 ~~~~~~al~~~ 251 (272)
T 3u4t_A 241 DAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999987643
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.44 E-value=1.7e-12 Score=121.04 Aligned_cols=214 Identities=10% Similarity=0.063 Sum_probs=147.1
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHH
Q 005881 344 VVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDM 423 (672)
Q Consensus 344 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 423 (672)
...|..+...+...|++++|...|+++.+. .|+ +...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~----------------------------------~~~~~~~la~~ 66 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKE----------------------------------DAIPYINFANL 66 (243)
T ss_dssp -------------------CCTTHHHHHTT--CTT----------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--Ccc----------------------------------cHHHHHHHHHH
Confidence 344555666666667777777777666653 221 23444556666
Q ss_pred HHhcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHH
Q 005881 424 YAKCGRLNDARKVFDHLS---SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGW 500 (672)
Q Consensus 424 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 500 (672)
|...|++++|.+.|+++. ..+...|..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.
T Consensus 67 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~ 145 (243)
T 2q7f_A 67 LSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLAL 145 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence 777777777777777665 3455678888888899999999999999988853 345667888888899999999999
Q ss_pred HHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 005881 501 HYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTD 578 (672)
Q Consensus 501 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 578 (672)
..++++.+.. +.+...+..++.++.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++++
T Consensus 146 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 146 PYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999887432 235778888999999999999999998763 2233 57788889999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcC
Q 005881 579 PEDTSAHIMLSNVYAEAN 596 (672)
Q Consensus 579 p~~~~~~~~l~~~~~~~g 596 (672)
|+++..+..++.+....|
T Consensus 224 p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 224 PDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp TTCHHHHHHHTC------
T ss_pred cchHHHHHHHHHHHhhcc
Confidence 999888887766654433
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.44 E-value=7.1e-13 Score=134.62 Aligned_cols=196 Identities=12% Similarity=-0.004 Sum_probs=139.8
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHhhCCC-----C----CchhHHHHHHHHHhcCC-----------------hHHHHHHH
Q 005881 415 VIGSALVDMYAKCGRLNDARKVFDHLSS-----K----NLVSWNTMLVGYAQHGL-----------------GREALEIY 468 (672)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~-----------------~~~A~~~~ 468 (672)
.++..+...|...|++++|.+.|++... . ...++..+...|...|+ +++|++.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 4455666677777777777777766542 1 12366777778888888 88888888
Q ss_pred HHHHHC----CCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCc----hHHHHHHHHHhhccCChHHHHHHH
Q 005881 469 SMMQEN----KIKPND-NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPR----MDHIASVVHLFACRGQTRRAYEFI 539 (672)
Q Consensus 469 ~~m~~~----g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~ 539 (672)
++..+. +-.|.. .++..+...+...|++++|...+++..+...-.++ ...+..++.+|...|++++|.+.+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 776542 111222 36777888888899999999988887643211112 236788888999999999998888
Q ss_pred HhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC------CchHHHHHHHHHhcCChHHHHHHH
Q 005881 540 KSS-------PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPED------TSAHIMLSNVYAEANMWDETAKVR 605 (672)
Q Consensus 540 ~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~ 605 (672)
++. +..+ ...++..+...+...|++++|...+++++++.+.. ..++..++.+|...|++++|.+.+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 652 1111 14567778888899999999999999998875532 347889999999999999999999
Q ss_pred HHHhh
Q 005881 606 KIMKE 610 (672)
Q Consensus 606 ~~~~~ 610 (672)
++..+
T Consensus 367 ~~al~ 371 (411)
T 4a1s_A 367 EQHLQ 371 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.44 E-value=1.6e-12 Score=123.79 Aligned_cols=219 Identities=12% Similarity=-0.009 Sum_probs=177.5
Q ss_pred HcCcCchHHHHHHHHHHHhcCC---CCcccHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChH
Q 005881 389 SSDIPAIEWGKQTHCCIVKPGF---DSNVVIGSALVDMYAKCGRLNDARKVFDHLS---SKNLVSWNTMLVGYAQHGLGR 462 (672)
Q Consensus 389 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 462 (672)
....+++++|...++.+.+... +.+..++..+...|...|++++|...|+++. ..+...|..+...|...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 3456889999999999988642 2256778889999999999999999999876 345778999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhC
Q 005881 463 EALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSS 542 (672)
Q Consensus 463 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (672)
+|++.|+++.+.. +.+...+..+...+...|++++|...|+.+.+ ..|+..........+...|++++|...+++.
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999852 33567889999999999999999999999984 3565444444555667789999999999642
Q ss_pred -CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC----CCchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 005881 543 -PIE-PNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPE----DTSAHIMLSNVYAEANMWDETAKVRKIMKEKS 612 (672)
Q Consensus 543 -~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 612 (672)
... ++...| .++..+...++.+.|...++++++..|. ++..+..++.+|...|++++|.+.+++..+..
T Consensus 171 ~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 171 FEKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HhcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 222 333334 3666788889999999999999988774 36888999999999999999999999987643
No 57
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.44 E-value=1.5e-11 Score=115.36 Aligned_cols=204 Identities=13% Similarity=0.009 Sum_probs=154.2
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHH
Q 005881 344 VVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDM 423 (672)
Q Consensus 344 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 423 (672)
...|..+...+...|++++|++.|+++... .|+ +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~----------------------------------~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPS----------------------------------SADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTT----------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCC----------------------------------hHHHHHHHHHH
Confidence 345666677777777777777777777654 221 23344556666
Q ss_pred HHhcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCcHHHH
Q 005881 424 YAKCGRLNDARKVFDHLS---SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPND-NTFIGVLSACVHIGLVEEG 499 (672)
Q Consensus 424 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a 499 (672)
|...|++++|.+.|+++. ..+...|..+...|...|++++|.++|+++.+.+..|+. ..+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777654 335567788888888899999999999988874445544 5677788888899999999
Q ss_pred HHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 005881 500 WHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILS 576 (672)
Q Consensus 500 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 576 (672)
...++.+.+. .| +...+..++.++...|++++|.+.+++. ...| +...+..+...+...|+.++|...++++++
T Consensus 161 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 161 KEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999888743 34 5678888999999999999999998763 3334 566788888889999999999999999999
Q ss_pred CCCCCCchHH
Q 005881 577 TDPEDTSAHI 586 (672)
Q Consensus 577 ~~p~~~~~~~ 586 (672)
..|+++....
T Consensus 238 ~~p~~~~~~~ 247 (252)
T 2ho1_A 238 LYPGSLEYQE 247 (252)
T ss_dssp HCTTSHHHHH
T ss_pred HCCCCHHHHH
Confidence 9998766544
No 58
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.43 E-value=4.8e-12 Score=115.36 Aligned_cols=108 Identities=13% Similarity=0.121 Sum_probs=46.6
Q ss_pred CCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHH
Q 005881 428 GRLNDARKVFDHLS---SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFN 504 (672)
Q Consensus 428 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 504 (672)
|++++|...|++.. ..+...|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|+..|+
T Consensus 98 g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~ 175 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYA 175 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555554443 1223344455555555555555555555555543 344445555555555555555555555
Q ss_pred HhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHH
Q 005881 505 SMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIK 540 (672)
Q Consensus 505 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (672)
++.+. .| +...+..+..++.+.|++++|.+.++
T Consensus 176 ~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 176 KALEQ---APKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHH---STTCHHHHHHHHHHHTC------------
T ss_pred HHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 54421 23 33444445555555555555554444
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.42 E-value=2.1e-12 Score=126.92 Aligned_cols=258 Identities=12% Similarity=0.020 Sum_probs=171.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCC-----hHHHHHHHHHHcCcCchHHHHHHHHHHHhc----CCC-CcccHHHHHH
Q 005881 352 AGHLASCHYGEAIELLKDMLFEGHCPN-----LYTYSNILNISSDIPAIEWGKQTHCCIVKP----GFD-SNVVIGSALV 421 (672)
Q Consensus 352 ~~~~~~~~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~ 421 (672)
..+...|++++|+..|+++.+. .|+ ...+..+...+...|+++.|...+....+. +.. ....++..+.
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 3444555555555555555443 122 123334444455555555555555444321 111 1234556677
Q ss_pred HHHHhcCCHHHHHHHHhhCCC-----CC----chhHHHHHHHHHhcCC--------------------hHHHHHHHHHHH
Q 005881 422 DMYAKCGRLNDARKVFDHLSS-----KN----LVSWNTMLVGYAQHGL--------------------GREALEIYSMMQ 472 (672)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~ 472 (672)
..|...|++++|...+++..+ ++ ..++..+...|...|+ +++|.+.+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 777788888888887776541 22 2367777888888888 888888887765
Q ss_pred HC----CCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCc----hHHHHHHHHHhhccCChHHHHHHHHhC-
Q 005881 473 EN----KIKPN-DNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPR----MDHIASVVHLFACRGQTRRAYEFIKSS- 542 (672)
Q Consensus 473 ~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~- 542 (672)
.. +-.|. ..++..+...+...|++++|...++...+...-.++ ...+..++..+...|++++|.+.+++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42 11122 236777888889999999999999887643211122 247888899999999999999988752
Q ss_pred ---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC------CchHHHHHHHHHhcCChHHHHHHHHHHh
Q 005881 543 ---PIEPN----KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPED------TSAHIMLSNVYAEANMWDETAKVRKIMK 609 (672)
Q Consensus 543 ---~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 609 (672)
+..++ ..++..+...+...|++++|...+++++++.|.. ..++..++.+|...|++++|.+.+++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 11112 4466777888999999999999999998876533 3478899999999999999999999887
Q ss_pred hC
Q 005881 610 EK 611 (672)
Q Consensus 610 ~~ 611 (672)
+.
T Consensus 331 ~~ 332 (338)
T 3ro2_A 331 EI 332 (338)
T ss_dssp HC
T ss_pred HH
Confidence 53
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.42 E-value=4.5e-12 Score=128.40 Aligned_cols=194 Identities=12% Similarity=0.029 Sum_probs=106.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----chhHHHHHHHHHhcCC--------------------hHHHHH
Q 005881 416 IGSALVDMYAKCGRLNDARKVFDHLSS-----KN----LVSWNTMLVGYAQHGL--------------------GREALE 466 (672)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 466 (672)
++..+...|...|++++|...+++..+ ++ ..++..+...|...|+ +++|.+
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 344455555555666666555554431 11 2245555666666666 666666
Q ss_pred HHHHHHHC----CCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCc----hHHHHHHHHHhhccCChHHHHH
Q 005881 467 IYSMMQEN----KIKPND-NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPR----MDHIASVVHLFACRGQTRRAYE 537 (672)
Q Consensus 467 ~~~~m~~~----g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~ 537 (672)
.+++.... +-.|.. .++..+...+...|++++|...+++..+...-.++ ...+..++.+|...|++++|.+
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 66554431 111111 24555666666667777776666665532211121 2356666666667777777666
Q ss_pred HHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC------CchHHHHHHHHHhcCChHHHHH
Q 005881 538 FIKSS----PIEPN----KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPED------TSAHIMLSNVYAEANMWDETAK 603 (672)
Q Consensus 538 ~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~ 603 (672)
.+++. +..++ ..++..+...+...|++++|...+++++++.+.. ..++..++.+|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66542 00011 3345556666666777777777777776654322 3456667777777777777777
Q ss_pred HHHHHh
Q 005881 604 VRKIMK 609 (672)
Q Consensus 604 ~~~~~~ 609 (672)
.+++..
T Consensus 329 ~~~~al 334 (406)
T 3sf4_A 329 FAEKHL 334 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766654
No 61
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.39 E-value=4.5e-11 Score=109.72 Aligned_cols=206 Identities=11% Similarity=0.004 Sum_probs=151.7
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHH
Q 005881 344 VVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDM 423 (672)
Q Consensus 344 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 423 (672)
...|..+...+...|++++|++.|+++.+. .|+ +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~----------------------------------~~~~~~~l~~~ 51 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKS--DPK----------------------------------NELAWLVRAEI 51 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT----------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--Ccc----------------------------------chHHHHHHHHH
Confidence 345556666666677777777777666653 221 23345566666
Q ss_pred HHhcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHH
Q 005881 424 YAKCGRLNDARKVFDHLS---SKNLVSWNTMLVGYAQH-GLGREALEIYSMMQENKIKPN-DNTFIGVLSACVHIGLVEE 498 (672)
Q Consensus 424 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~ 498 (672)
|...|++++|.+.|+++. ..+...|..+...+... |++++|.+.++++.+.+..|+ ...+..+...+...|++++
T Consensus 52 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 131 (225)
T 2vq2_A 52 YQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL 131 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777664 34556778888888888 999999999998887433454 3567788888889999999
Q ss_pred HHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005881 499 GWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIE--PNKVVWRCLLSGCKTHKDLVLGRYAAEKI 574 (672)
Q Consensus 499 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 574 (672)
|...++.+.+. .| +...+..++.++.+.|++++|.+.+++. ... .+...+..+...+...|+.+.+...++.+
T Consensus 132 A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 132 AEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 99999888743 34 4678888999999999999999988763 222 35666766777788999999999999999
Q ss_pred hcCCCCCCchHHHH
Q 005881 575 LSTDPEDTSAHIML 588 (672)
Q Consensus 575 ~~~~p~~~~~~~~l 588 (672)
.+..|+++.....+
T Consensus 209 ~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 209 QANFPYSEELQTVL 222 (225)
T ss_dssp HHHCTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHh
Confidence 99999887765544
No 62
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.39 E-value=2.4e-12 Score=137.53 Aligned_cols=161 Identities=18% Similarity=0.145 Sum_probs=139.8
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHH
Q 005881 445 LVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPND-NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASV 522 (672)
Q Consensus 445 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 522 (672)
..+|+.|...|.+.|++++|++.|++.++ +.|+. .++..+..++.+.|++++|+..|++..+ +.| +...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 45788888899999999999999999888 45664 5788889999999999999999998873 356 46889999
Q ss_pred HHHhhccCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHH
Q 005881 523 VHLFACRGQTRRAYEFIKS-SPIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDE 600 (672)
Q Consensus 523 ~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 600 (672)
+.+|...|++++|++.+++ +.+.| +...|..+...+...|++++|+..|+++++++|+++.++..++.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999876 34566 567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 005881 601 TAKVRKIMKE 610 (672)
Q Consensus 601 a~~~~~~~~~ 610 (672)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887653
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.38 E-value=2.8e-12 Score=129.87 Aligned_cols=154 Identities=11% Similarity=-0.001 Sum_probs=111.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCc----h
Q 005881 446 VSWNTMLVGYAQHGLGREALEIYSMMQENKI-KPN----DNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPR----M 516 (672)
Q Consensus 446 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~ 516 (672)
.++..+...|...|++++|.+.+++..+... .++ ..++..+...+...|++++|...++.......-.++ .
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 3567777888888888888888888765210 122 126777888888899999999888877643211112 4
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC------CCC
Q 005881 517 DHIASVVHLFACRGQTRRAYEFIKSS-------PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDP------EDT 582 (672)
Q Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p------~~~ 582 (672)
..+..++.+|...|++++|.+.+++. +..+ ...++..+...+...|++++|...+++++++.+ ...
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 347 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 57778888999999999998888652 1111 144677788889999999999999999987643 235
Q ss_pred chHHHHHHHHHhcCChH
Q 005881 583 SAHIMLSNVYAEANMWD 599 (672)
Q Consensus 583 ~~~~~l~~~~~~~g~~~ 599 (672)
.++..++.+|...|+..
T Consensus 348 ~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 348 TARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhhHhH
Confidence 66778888888888764
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.38 E-value=6.5e-12 Score=111.35 Aligned_cols=166 Identities=13% Similarity=0.104 Sum_probs=141.5
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005881 413 NVVIGSALVDMYAKCGRLNDARKVFDHLS---SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSA 489 (672)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 489 (672)
+..+|..+...|.+.|++++|.+.|++.. ..++.+|..+...|...|++++|+..+++..... +-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 45678889999999999999999999876 3456789999999999999999999999998852 3344567777888
Q ss_pred hhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 005881 490 CVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVL 566 (672)
Q Consensus 490 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 566 (672)
+...++++.|...+...... .| +...+..++.+|.+.|++++|++.+++. ...| +..+|..+...+...|++++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 89999999999999988743 44 5788999999999999999999999763 3455 67789999999999999999
Q ss_pred HHHHHHHHhcCCCCCC
Q 005881 567 GRYAAEKILSTDPEDT 582 (672)
Q Consensus 567 a~~~~~~~~~~~p~~~ 582 (672)
|+..++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999999653
No 65
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.37 E-value=3.5e-09 Score=111.82 Aligned_cols=415 Identities=8% Similarity=0.030 Sum_probs=251.6
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCC---hHHHHHHHHHHHHhc-CCCcHHHHH
Q 005881 141 NSISWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCASVLGACAVLGN---LKVGMQIHSLVFKCA-LEFDKFVAM 216 (672)
Q Consensus 141 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~~ 216 (672)
|..+|..++..+.+.+.++.+..+|+.+... .+.....|...+..-.+.++ .+.+..+|+..+... .+|++..|.
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 6778888888888888888888888888775 33445566666666666677 888888888877764 246666777
Q ss_pred HHHHHhhcCCCh--------hHHHHHHhcCC------CC-CcchHHHHHHHHHh---------cCChhHHHHHHHHHHHC
Q 005881 217 GLINLYAKCEKL--------DLASRVFSNIQ------LP-DLTAWSALIGGYAQ---------LGKACEAIDLFVKMFSS 272 (672)
Q Consensus 217 ~li~~~~~~g~~--------~~a~~~~~~~~------~~-~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~ 272 (672)
..+....+.++. +...++|+... .+ +...|...+..... .++++.+..+|+..+..
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i 223 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ 223 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC
Confidence 666554444432 22335555421 12 23456666554332 23355566666666532
Q ss_pred CCCCChhhHHHHHHHhhccCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhh-------CCC----
Q 005881 273 GLMPSEVTFSYVLGAFADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDE-------MDE---- 341 (672)
Q Consensus 273 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-------~~~---- 341 (672)
....-..+|.... .+.+.-+...+.+++.+.. .+++.|...+.+ +..
T Consensus 224 P~~~~~~~w~~Y~-~fe~~~~~~~a~~~~~e~~---------------------~~y~~Ar~~~~e~~~~~~~l~r~~p~ 281 (679)
T 4e6h_A 224 PMDCLESMWQRYT-QWEQDVNQLTARRHIGELS---------------------AQYMNARSLYQDWLNITKGLKRNLPI 281 (679)
T ss_dssp CCSSHHHHHHHHH-HHHHHHCTTTHHHHHHHHH---------------------HHHHHHHHHHHHHHHHTTTCCCCCCS
T ss_pred ccHHHHHHHHHHH-HHHHhcCcchHHHHHHHhh---------------------HHHHHHHHHHHHHHHHHHhHhhcccc
Confidence 1000111121111 1111001111222211110 112222222221 110
Q ss_pred ----------C--C------cccHHHHHHHHHhcC-------ChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchH
Q 005881 342 ----------H--D------VVSWNALIAGHLASC-------HYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIE 396 (672)
Q Consensus 342 ----------~--~------~~~~~~li~~~~~~~-------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 396 (672)
| + ...|...+.---..+ ..+.+..+|++.+.. ..-+...|.....-+...|+.+
T Consensus 282 ~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~ 360 (679)
T 4e6h_A 282 TLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDS 360 (679)
T ss_dssp SSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCT
T ss_pred ccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHH
Confidence 0 0 123444443322222 123355667777664 2235566666666667778888
Q ss_pred HHH-HHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCC-------------CC------------chhHHH
Q 005881 397 WGK-QTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSS-------------KN------------LVSWNT 450 (672)
Q Consensus 397 ~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~ 450 (672)
.|. .+++...... +.+..++-.++...-+.|+++.|.++|+.+.. |+ ...|-.
T Consensus 361 ~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~ 439 (679)
T 4e6h_A 361 TVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCV 439 (679)
T ss_dssp THHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHH
Confidence 886 9999888643 44566677788888889999999999988763 31 235777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhhc-cCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhc
Q 005881 451 MLVGYAQHGLGREALEIYSMMQEN-KIKPNDNTFIGVLSACVH-IGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFAC 528 (672)
Q Consensus 451 li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 528 (672)
.+....+.|+.+.|..+|.+.++. + .+....|......-.+ .++.+.|..+|+...+.+ +-+...+...++....
T Consensus 440 y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 440 YMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHh
Confidence 788888889999999999999885 2 1122333322222222 356899999999998654 3355677788888888
Q ss_pred cCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 005881 529 RGQTRRAYEFIKSS-PIEP----NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTS 583 (672)
Q Consensus 529 ~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 583 (672)
.|+.+.|..+|++. ...| ....|...+..-...|+.+.+..+.+++.+..|+++.
T Consensus 517 ~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 99999999999863 3333 3457888888888999999999999999999997643
No 66
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.36 E-value=4.3e-09 Score=111.10 Aligned_cols=213 Identities=9% Similarity=-0.028 Sum_probs=111.1
Q ss_pred chHHHHHHHHHHHccCChHHHH-HHHhhCCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHhCC---------CCCC
Q 005881 312 FTFVANTVLDFYSKCELLEESL-KTFDEMDE--H-DVVSWNALIAGHLASCHYGEAIELLKDMLFEG---------HCPN 378 (672)
Q Consensus 312 ~~~~~~~li~~~~~~~~~~~a~-~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g---------~~p~ 378 (672)
...+|-..+..+...|+.++|. .+|++... | +...|-..+...-+.|++++|.++|+++.... -.|+
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 4444444444444555555553 55544332 2 22234444444555555555555555554421 0121
Q ss_pred ------------hHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhc-CCHHHHHHHHhhCC---C
Q 005881 379 ------------LYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKC-GRLNDARKVFDHLS---S 442 (672)
Q Consensus 379 ------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~---~ 442 (672)
...|...+....+.+..+.|+.++..+.+....+...+|...+..-.+. ++.+.|.++|+... .
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p 501 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA 501 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC
Confidence 2245555555556666777777777766541111222333222222333 34677777777665 2
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHH
Q 005881 443 KNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPND--NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIA 520 (672)
Q Consensus 443 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 520 (672)
.+...|...+.-....|+.+.|..+|++.......++. ..|...+.--.+.|+.+.+..+.+++.+. .|+.....
T Consensus 502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~---~P~~~~~~ 578 (679)
T 4e6h_A 502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK---FPEVNKLE 578 (679)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH---STTCCHHH
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCcHHH
Confidence 34455666666666667777777777777665321211 34555666556667777777777777643 34444444
Q ss_pred HHHHHhh
Q 005881 521 SVVHLFA 527 (672)
Q Consensus 521 ~l~~~~~ 527 (672)
.+++-|.
T Consensus 579 ~f~~ry~ 585 (679)
T 4e6h_A 579 EFTNKYK 585 (679)
T ss_dssp HHHHHTC
T ss_pred HHHHHhc
Confidence 4455553
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.32 E-value=3.1e-11 Score=124.16 Aligned_cols=178 Identities=8% Similarity=-0.009 Sum_probs=155.0
Q ss_pred HHHHHHHHhhCC---CCCchhHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHH
Q 005881 430 LNDARKVFDHLS---SKNLVSWNTMLVGYAQHGLG-REALEIYSMMQENKIKPN-DNTFIGVLSACVHIGLVEEGWHYFN 504 (672)
Q Consensus 430 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 504 (672)
++++...++... ..+...|..+...|...|++ ++|++.|++..+. .|+ ...+..+..++...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666665543 34567888999999999999 9999999999985 455 5689999999999999999999999
Q ss_pred HhHHhhCCCCchHHHHHHHHHhhcc---------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CCHH
Q 005881 505 SMIRDHGISPRMDHIASVVHLFACR---------GQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTH--------KDLV 565 (672)
Q Consensus 505 ~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------g~~~ 565 (672)
+.. .+.|+...+..+..+|... |++++|.+.+++. ...| +...|..+..++... |+++
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 988 5578888999999999999 9999999999863 3455 577899999999888 9999
Q ss_pred HHHHHHHHHhcCCC---CCCchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 005881 566 LGRYAAEKILSTDP---EDTSAHIMLSNVYAEANMWDETAKVRKIMKEKS 612 (672)
Q Consensus 566 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 612 (672)
+|+..++++++++| +++..+..++.+|...|++++|.+.+++..+..
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999 999999999999999999999999999987643
No 68
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.32 E-value=3.9e-11 Score=110.54 Aligned_cols=162 Identities=9% Similarity=-0.036 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHH
Q 005881 446 VSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVH 524 (672)
Q Consensus 446 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 524 (672)
..|......+...|++++|++.|++..+...+++...+..+..++...|++++|+..|+... ...| +...+..++.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAI---KKNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHH---HhCcchHHHHHHHHH
Confidence 34444455555555555555555555553211444444445555555555555555555544 2233 2344555555
Q ss_pred HhhccCChHHHHHHHHhC-CCCC-CH-------HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC--CCchHHHHHHHHH
Q 005881 525 LFACRGQTRRAYEFIKSS-PIEP-NK-------VVWRCLLSGCKTHKDLVLGRYAAEKILSTDPE--DTSAHIMLSNVYA 593 (672)
Q Consensus 525 ~~~~~g~~~~A~~~~~~~-~~~p-~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~ 593 (672)
+|...|++++|.+.+++. ...| +. ..|..+...+...|++++|+..++++++++|+ ++.++..++.+|.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 555555555555555432 1222 22 23444444455556666666666666666665 5555555666555
Q ss_pred hcCCh---------------------------HHHHHHHHHHhh
Q 005881 594 EANMW---------------------------DETAKVRKIMKE 610 (672)
Q Consensus 594 ~~g~~---------------------------~~a~~~~~~~~~ 610 (672)
..|+. ++|...+++..+
T Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 165 NNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555 888888887765
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.31 E-value=1.2e-10 Score=112.65 Aligned_cols=176 Identities=13% Similarity=0.086 Sum_probs=88.2
Q ss_pred HHHHHHHhhCCC---C-CchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-H-HHHHHHHHhhccCcHHHHHHHHH
Q 005881 431 NDARKVFDHLSS---K-NLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPND-N-TFIGVLSACVHIGLVEEGWHYFN 504 (672)
Q Consensus 431 ~~A~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~-~~~~ll~~~~~~g~~~~a~~~~~ 504 (672)
++|..+|++..+ | +...|..++..+...|++++|.++|++.++ +.|+. . .|..+...+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 555555554432 1 223455555555555555555555555555 33432 1 45555555555555555555555
Q ss_pred HhHHhhCCCC-chHHHHHHHHHhh-ccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC---
Q 005881 505 SMIRDHGISP-RMDHIASVVHLFA-CRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILST--- 577 (672)
Q Consensus 505 ~~~~~~~~~p-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 577 (672)
+..+ ..| +...|...+.... ..|+.++|.++|++. ...| +...|..++..+...|+.++|..+|+++++.
T Consensus 159 ~a~~---~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l 235 (308)
T 2ond_A 159 KARE---DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHT---STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHh---cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence 5542 222 2333332222211 245555555555432 1122 3445555555555556666666666666553
Q ss_pred CCC-CCchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 005881 578 DPE-DTSAHIMLSNVYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 578 ~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 611 (672)
.|+ ....|..++..+.+.|++++|..+++++.+.
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 332 3445555566666666666666666555543
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.31 E-value=5.3e-11 Score=119.37 Aligned_cols=163 Identities=11% Similarity=0.025 Sum_probs=86.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHhhccCcHHHHHHHHHHhHHhh---CCCC-chH
Q 005881 447 SWNTMLVGYAQHGLGREALEIYSMMQENKI-KPND----NTFIGVLSACVHIGLVEEGWHYFNSMIRDH---GISP-RMD 517 (672)
Q Consensus 447 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~ 517 (672)
+++.+...|...|++++|++.|++..+..- .++. .++..+...+...|++++|...+++..+.. +..| ...
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 445555555566666666666555543200 0111 245555666666666666666666554311 1212 235
Q ss_pred HHHHHHHHhhccCChHHHHHHHHhC-C-----CCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHhcCCCCCCchHHH
Q 005881 518 HIASVVHLFACRGQTRRAYEFIKSS-P-----IEPN-KVVWRCLLSGCKTHKD---LVLGRYAAEKILSTDPEDTSAHIM 587 (672)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~-~-----~~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~ 587 (672)
.+..++.+|.+.|++++|.+.+++. . ..|. ...+..+...+...|+ .++|...+++. ...|.....+..
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 344 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHH
Confidence 5566666666666666666665432 0 0111 1123444445556666 55666665554 233334456667
Q ss_pred HHHHHHhcCChHHHHHHHHHHhh
Q 005881 588 LSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 588 l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
++.+|...|++++|.+.+++..+
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777777777777776643
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.30 E-value=4.6e-10 Score=108.51 Aligned_cols=219 Identities=6% Similarity=0.052 Sum_probs=161.1
Q ss_pred hHHHHHHHHHHhCCCCC-ChHHHHHHHHHHc-------CcCch-------HHHHHHHHHHHhcCCCCcccHHHHHHHHHH
Q 005881 361 GEAIELLKDMLFEGHCP-NLYTYSNILNISS-------DIPAI-------EWGKQTHCCIVKPGFDSNVVIGSALVDMYA 425 (672)
Q Consensus 361 ~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (672)
++|...|++.+.. .| +...|..+...+. ..|+. ++|..+++..++.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4666666666653 33 3334444444433 34554 777777777776322334567888888888
Q ss_pred hcCCHHHHHHHHhhCCC--C-Cch-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh-hccCcHHHHH
Q 005881 426 KCGRLNDARKVFDHLSS--K-NLV-SWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSAC-VHIGLVEEGW 500 (672)
Q Consensus 426 ~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~ 500 (672)
+.|++++|.++|+++.+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|++++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999988763 3 333 79999999999999999999999999853 33334454433332 2369999999
Q ss_pred HHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005881 501 HYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSS----PIEP--NKVVWRCLLSGCKTHKDLVLGRYAAEKI 574 (672)
Q Consensus 501 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 574 (672)
.+|+...+.. +-+...|..++..+.+.|+.++|..+|++. .+.| ....|..++......|+.+.|..+++++
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999988543 226788999999999999999999999863 2345 4668999999999999999999999999
Q ss_pred hcCCCCCCch
Q 005881 575 LSTDPEDTSA 584 (672)
Q Consensus 575 ~~~~p~~~~~ 584 (672)
++..|+++..
T Consensus 268 ~~~~p~~~~~ 277 (308)
T 2ond_A 268 FTAFREEYEG 277 (308)
T ss_dssp HHHTTTTTSS
T ss_pred HHHccccccc
Confidence 9999976543
No 72
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.30 E-value=2.6e-11 Score=123.05 Aligned_cols=133 Identities=10% Similarity=-0.055 Sum_probs=93.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC----chH
Q 005881 447 SWNTMLVGYAQHGLGREALEIYSMMQENKI-KPN----DNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP----RMD 517 (672)
Q Consensus 447 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~ 517 (672)
.|..+...|...|++++|++.|++..+... .++ ..++..+...+...|++++|...+++......-.. ...
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 566677777777788877777777665210 011 12667777788888888888888877664321111 146
Q ss_pred HHHHHHHHhhccCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 005881 518 HIASVVHLFACRGQTRRAYEFIKSS-------PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDP 579 (672)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 579 (672)
.+..++.+|...|++++|.+.+++. +..+ ...++..+...+...|++++|...+++++++.+
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 6778888888888888888887653 1111 134667778889999999999999999998877
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.30 E-value=3.3e-11 Score=120.86 Aligned_cols=292 Identities=10% Similarity=0.030 Sum_probs=209.3
Q ss_pred hhccCCchhHHHHHHHHHHh--CC--CCchHHHHHHHHHH--HccCChHHHH-----------HHHhhCCC-C-CcccH-
Q 005881 288 FADVKETIGGRQLHSLIIKM--GF--SSFTFVANTVLDFY--SKCELLEESL-----------KTFDEMDE-H-DVVSW- 347 (672)
Q Consensus 288 ~~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~li~~~--~~~~~~~~a~-----------~~~~~~~~-~-~~~~~- 347 (672)
+.+.+++++|..+.+++.+. .+ .++...|-.++..- ...+.++.+. ..++.+.. + +...+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45789999999999998764 33 23334444444321 1223333333 44544432 1 11111
Q ss_pred -----HHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----hHHHHHHHHHHcCcCchHHHHHHHHHHHhcCC------C
Q 005881 348 -----NALIAGHLASCHYGEAIELLKDMLFEGH-CPN----LYTYSNILNISSDIPAIEWGKQTHCCIVKPGF------D 411 (672)
Q Consensus 348 -----~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~ 411 (672)
......+...|++++|+..|++....-. .++ ..++..+-..+...|+++.|...+....+... .
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 1144567789999999999999886411 122 34677777889999999999999998876411 1
Q ss_pred CcccHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCc----hhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC
Q 005881 412 SNVVIGSALVDMYAKCGRLNDARKVFDHLSS-----KNL----VSWNTMLVGYAQHGLGREALEIYSMMQEN----KIKP 478 (672)
Q Consensus 412 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p 478 (672)
....+++.+...|...|++++|.+.|++..+ ++. .++..+...|...|++++|++.|++..+. +..|
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 1235678888999999999999999988762 222 37888999999999999999999998872 2324
Q ss_pred C-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCC--C-chHHHHHHHHHhhccCC---hHHHHHHHHhCCCCCCHH-H
Q 005881 479 N-DNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGIS--P-RMDHIASVVHLFACRGQ---TRRAYEFIKSSPIEPNKV-V 550 (672)
Q Consensus 479 ~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~~-~ 550 (672)
+ ..++..+...+...|++++|...+++......-. | ....+..+...|...|+ +++|++++++.+..|+.. .
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 341 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDF 341 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHH
Confidence 4 3578899999999999999999999887432211 2 22346778889999999 999999999986555433 5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 005881 551 WRCLLSGCKTHKDLVLGRYAAEKILSTDP 579 (672)
Q Consensus 551 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 579 (672)
+..+...+...|++++|...+++++++..
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 66778889999999999999999987654
No 74
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.28 E-value=1.7e-10 Score=106.20 Aligned_cols=204 Identities=13% Similarity=0.081 Sum_probs=132.1
Q ss_pred ChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCchhHHHHHHH
Q 005881 378 NLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSS---KNLVSWNTMLVG 454 (672)
Q Consensus 378 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 454 (672)
|+..+...-..+...|++++|...+...++...+++...+..+..++...|++++|.+.|++..+ .+...|..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 44556666667777777777777777777766545555555577777777777777777776652 233466777777
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH--------HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCc---hHHHHHHH
Q 005881 455 YAQHGLGREALEIYSMMQENKIKPND--------NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPR---MDHIASVV 523 (672)
Q Consensus 455 ~~~~g~~~~A~~~~~~m~~~g~~p~~--------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~ 523 (672)
|...|++++|++.|++..+. .|+. ..|..+...+...|++++|+..|+++. ...|+ ...+..+.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHH
Confidence 77777777777777777763 3432 235566666777777777777777666 34554 35666666
Q ss_pred HHhhccCCh--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 005881 524 HLFACRGQT--RRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYA 593 (672)
Q Consensus 524 ~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 593 (672)
.+|...|+. ++|..+ . ..+...+.... ....+.+++|...++++++++|+++.+...+..+..
T Consensus 161 ~~~~~~~~~~~~~a~~~----~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 161 VLFYNNGADVLRKATPL----A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHGGG----T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhc----c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 666554433 222111 1 11233332222 233456799999999999999999888887776643
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.28 E-value=1.4e-10 Score=102.62 Aligned_cols=160 Identities=13% Similarity=0.046 Sum_probs=97.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhc
Q 005881 449 NTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFAC 528 (672)
Q Consensus 449 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 528 (672)
..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..++..+..
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHH
Confidence 333444444444444444444444321 1223344444445555555555555555444221 1234445555555555
Q ss_pred cCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 005881 529 RGQTRRAYEFIKSS-PI-EPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRK 606 (672)
Q Consensus 529 ~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 606 (672)
.|++++|.+.+++. .. ..+...+..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.++
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555432 11 22556677777778888888888888888888888888888899999999999999999888
Q ss_pred HHhhC
Q 005881 607 IMKEK 611 (672)
Q Consensus 607 ~~~~~ 611 (672)
+..+.
T Consensus 169 ~~~~~ 173 (186)
T 3as5_A 169 KANEL 173 (186)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 87654
No 76
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.27 E-value=4.4e-11 Score=117.45 Aligned_cols=134 Identities=11% Similarity=-0.005 Sum_probs=86.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCc----hH
Q 005881 447 SWNTMLVGYAQHGLGREALEIYSMMQENKI-KPN----DNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPR----MD 517 (672)
Q Consensus 447 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 517 (672)
.+..+...+...|++++|.+.+++..+... .++ ..++..+...+...|++++|...++.......-.++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 455666667777777777777776654210 011 125666777777788888888777776533211111 45
Q ss_pred HHHHHHHHhhccCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 005881 518 HIASVVHLFACRGQTRRAYEFIKSS-------PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPE 580 (672)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 580 (672)
.+..++.+|...|++++|.+.+++. +..+ ...++..+...+...|++++|...+++++++.+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 6777788888888888888877642 1111 1336677778888999999999999999888763
No 77
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.27 E-value=6.7e-12 Score=121.87 Aligned_cols=237 Identities=13% Similarity=0.069 Sum_probs=128.6
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhc------CC
Q 005881 344 VVSWNALIAGHLASCHYGEAIELLKDMLFE-------GHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKP------GF 410 (672)
Q Consensus 344 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~ 410 (672)
..++..+...+...|++++|+.+|+++.+. ........+..+...+...|++++|...+..+.+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 346777788888899999999988888753 11112223333444444444444444444443322 00
Q ss_pred CCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCCH-HHH
Q 005881 411 DSNVVIGSALVDMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQEN------KIKPND-NTF 483 (672)
Q Consensus 411 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~~~ 483 (672)
.| ....++..+...|...|++++|.+.|+++.+. +-.|+. ..+
T Consensus 107 ~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 107 HP------------------------------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp CH------------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred Ch------------------------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 00 01234555566666666666666666666542 112222 345
Q ss_pred HHHHHHhhccCcHHHHHHHHHHhHHhh-----CCCC-chHHHHHHHHHhhccCChHHHHHHHHhCC----------CCCC
Q 005881 484 IGVLSACVHIGLVEEGWHYFNSMIRDH-----GISP-RMDHIASVVHLFACRGQTRRAYEFIKSSP----------IEPN 547 (672)
Q Consensus 484 ~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~ 547 (672)
..+...+...|++++|..+++.+.... +..| ....+..++.+|...|++++|.+.+++.- ..|.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 666666677777777777776665321 1122 23556666777777777777777665421 1111
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 548 -------KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 548 -------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
...+..+...+...+.+..+...++++....|..+.++..++.+|.+.|++++|.+.+++..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111122222334455666677777888878888888888999999999999999999887754
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.23 E-value=2.3e-11 Score=117.99 Aligned_cols=246 Identities=12% Similarity=0.027 Sum_probs=149.9
Q ss_pred CchHHHHHHHHHHHccCChHHHHHHHhhCCC--------C---CcccHHHHHHHHHhcCChhHHHHHHHHHHhC------
Q 005881 311 SFTFVANTVLDFYSKCELLEESLKTFDEMDE--------H---DVVSWNALIAGHLASCHYGEAIELLKDMLFE------ 373 (672)
Q Consensus 311 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------ 373 (672)
....++..+...|...|++++|...|+++.+ . ....+..+...|...|++++|+..+++....
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3466788899999999999999999988764 1 2346778888999999999999999998764
Q ss_pred CCCC-ChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHH
Q 005881 374 GHCP-NLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSKNLVSWNTML 452 (672)
Q Consensus 374 g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 452 (672)
+-.| ....+..+...+...|++++|...+..+.+... +. +..-.......+..+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~---------------~~---------~~~~~~~~~~~~~~la 160 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE---------------KV---------LGKDHPDVAKQLNNLA 160 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH---------------HH---------HCTTCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH---------------Hh---------cCCCChHHHHHHHHHH
Confidence 2122 234455555566666666666666555543200 00 0000000123455666
Q ss_pred HHHHhcCChHHHHHHHHHHHHC------CCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHhHHhh------CCCCc----
Q 005881 453 VGYAQHGLGREALEIYSMMQEN------KIKPND-NTFIGVLSACVHIGLVEEGWHYFNSMIRDH------GISPR---- 515 (672)
Q Consensus 453 ~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~p~---- 515 (672)
..+...|++++|+++|+++.+. +-.|+. .++..+...+...|++++|...++++.+.. ...+.
T Consensus 161 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 240 (311)
T 3nf1_A 161 LLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPI 240 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Confidence 6777777777777777776653 113332 356677777888888888888887776321 11111
Q ss_pred ---hHHHHHHHHHhhccCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 005881 516 ---MDHIASVVHLFACRGQTRRAYEFIKSSP-IEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPE 580 (672)
Q Consensus 516 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 580 (672)
...+..+...+...+.+.+|...++... ..| +..+|..+...+...|++++|...+++++++.|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1222333344455566666666666543 334 4557888888999999999999999999998774
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.23 E-value=3.5e-09 Score=105.65 Aligned_cols=194 Identities=11% Similarity=0.014 Sum_probs=129.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC-------C---C-chhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C--CHH
Q 005881 417 GSALVDMYAKCGRLNDARKVFDHLSS-------K---N-LVSWNTMLVGYAQHGLGREALEIYSMMQENKIK--P--NDN 481 (672)
Q Consensus 417 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------~---~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~ 481 (672)
+..+...+...|++++|.+.+++... + . ...+..+...+...|++++|...+++.....-. + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 34566667777888877777766541 1 1 124556777788888888888888887753211 1 124
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHH-----HHHHHhhccCChHHHHHHHHhCC-CCCC-----HHH
Q 005881 482 TFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIA-----SVVHLFACRGQTRRAYEFIKSSP-IEPN-----KVV 550 (672)
Q Consensus 482 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~ 550 (672)
++..+...+...|++++|...+++.............+. ..+..+...|++++|.+.+++.. ..|. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 566777778888889888888887764322111111111 23344778899999988887642 2221 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC------CchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 551 WRCLLSGCKTHKDLVLGRYAAEKILSTDPED------TSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 551 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
+..+...+...|++++|...++++++..+.. ...+..++.+|...|++++|...+++...
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5666777888899999999998887654321 13666788889999999999998887754
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.21 E-value=5.8e-10 Score=111.48 Aligned_cols=220 Identities=11% Similarity=-0.002 Sum_probs=141.0
Q ss_pred cCcCchHHHHHHHHHHHhcCC--C---CcccHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC-----chhHHHHHHH
Q 005881 390 SDIPAIEWGKQTHCCIVKPGF--D---SNVVIGSALVDMYAKCGRLNDARKVFDHLSS-----KN-----LVSWNTMLVG 454 (672)
Q Consensus 390 ~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~ 454 (672)
...|+++.|...+..+.+... . ....++..+...|...|+++.|...+++..+ ++ ..+++.+...
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 344555555555554443210 0 1233456667777777777777777665541 11 2366778888
Q ss_pred HHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhC--CCC-chHHHHHHHHHh
Q 005881 455 YAQHGLGREALEIYSMMQEN----KIKPN-DNTFIGVLSACVHIGLVEEGWHYFNSMIRDHG--ISP-RMDHIASVVHLF 526 (672)
Q Consensus 455 ~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~p-~~~~~~~l~~~~ 526 (672)
|...|++++|.+.|++..+. +-.+. ..++..+...+...|++++|...+++...... ..| ....+..++.+|
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 88888888888888877652 11111 13577788888888888888888887764111 123 356777888888
Q ss_pred hccCChHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcC
Q 005881 527 ACRGQTRRAYEFIKSS----PI--EPN-KVVWRCLLSGCKTHKD---LVLGRYAAEKILSTDPEDTSAHIMLSNVYAEAN 596 (672)
Q Consensus 527 ~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 596 (672)
.+.|++++|.+.+++. .. .|. ...+..+...+...++ +.+|...+++. ...|.....+..++.+|...|
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g 350 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSC 350 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCC
Confidence 8889988888888652 11 232 2344445555667777 77777777662 233334556778999999999
Q ss_pred ChHHHHHHHHHHhh
Q 005881 597 MWDETAKVRKIMKE 610 (672)
Q Consensus 597 ~~~~a~~~~~~~~~ 610 (672)
++++|.+.+++..+
T Consensus 351 ~~~~A~~~~~~al~ 364 (378)
T 3q15_A 351 HFEQAAAFYRKVLK 364 (378)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999998887653
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.19 E-value=1.1e-09 Score=96.66 Aligned_cols=167 Identities=11% Similarity=0.012 Sum_probs=140.6
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 005881 415 VIGSALVDMYAKCGRLNDARKVFDHLSS---KNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACV 491 (672)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 491 (672)
..+..+...+...|++++|.+.|+.+.+ .+...|..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3456677888899999999999999874 456688889999999999999999999998852 345678888899999
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 005881 492 HIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRY 569 (672)
Q Consensus 492 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 569 (672)
..|++++|...++.+... .+.+...+..++.++...|++++|.+.+++. ...| +...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999998753 2346788899999999999999999999763 2234 56788889999999999999999
Q ss_pred HHHHHhcCCCCCCch
Q 005881 570 AAEKILSTDPEDTSA 584 (672)
Q Consensus 570 ~~~~~~~~~p~~~~~ 584 (672)
.++++++..|+++..
T Consensus 166 ~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 166 HFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHCCCGG
T ss_pred HHHHHHHcCCCchhh
Confidence 999999999877643
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.17 E-value=3.6e-10 Score=108.29 Aligned_cols=188 Identities=12% Similarity=-0.039 Sum_probs=128.8
Q ss_pred HHHHhcCCHHHHHHHHhhCCC-----CC----chhHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--HHHHHHHH
Q 005881 422 DMYAKCGRLNDARKVFDHLSS-----KN----LVSWNTMLVGYAQHGLGREALEIYSMMQENKI---KPN--DNTFIGVL 487 (672)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~~~~ll 487 (672)
..|...|++++|.+.|++... .+ ..+|+.+...|...|++++|+..|++..+... .+. ..++..+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345666777777776665531 11 34677888888888889888888888765210 111 24678888
Q ss_pred HHhhcc-CcHHHHHHHHHHhHHhhCCCCc----hHHHHHHHHHhhccCChHHHHHHHHhC-CCCCC---H-----HHHHH
Q 005881 488 SACVHI-GLVEEGWHYFNSMIRDHGISPR----MDHIASVVHLFACRGQTRRAYEFIKSS-PIEPN---K-----VVWRC 553 (672)
Q Consensus 488 ~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~-----~~~~~ 553 (672)
..+... |++++|+..|++..+...-..+ ...+..++.+|.+.|++++|++.+++. ...|+ . ..|..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 888886 9999999999988743211111 356888999999999999999999763 22222 1 15667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCch-----HHHHHHHHH--hcCChHHHHHHHHHHh
Q 005881 554 LLSGCKTHKDLVLGRYAAEKILSTDPEDTSA-----HIMLSNVYA--EANMWDETAKVRKIMK 609 (672)
Q Consensus 554 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~a~~~~~~~~ 609 (672)
+...+...|+++.|...++++++++|+.... +..++..|. ..+++++|.+.++.+.
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 7777889999999999999999999976553 344566665 4567888888887553
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.15 E-value=1.7e-08 Score=100.68 Aligned_cols=226 Identities=8% Similarity=0.043 Sum_probs=160.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCC-CCC----hHHHHHHHHHHcCcCchHHHHHHHHHHHhcC-----CCC-cccHHHHH
Q 005881 352 AGHLASCHYGEAIELLKDMLFEGH-CPN----LYTYSNILNISSDIPAIEWGKQTHCCIVKPG-----FDS-NVVIGSAL 420 (672)
Q Consensus 352 ~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~-~~~~~~~l 420 (672)
..+...|++++|+..|++...... .++ ..++..+-..+...|+++.|...+....+.. ..+ ...+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 344566777777777776654311 122 2344555556666777777777666665421 111 24456778
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC-----CC----chhHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 005881 421 VDMYAKCGRLNDARKVFDHLSS-----KN----LVSWNTMLVGYAQHGLGREALEIYSMMQE-----NKIKPNDNTFIGV 486 (672)
Q Consensus 421 ~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~l 486 (672)
...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|++.|++..+ .. +....++..+
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~l 267 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGL 267 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHH
Confidence 8888899999999988877652 22 23678888999999999999999999887 42 2224678889
Q ss_pred HHHhhccCcHHHHHHHHHHhHHhhCCCCc---hHHHHHHHHHhhccCC---hHHHHHHHHhCCCCCCHH-HHHHHHHHHH
Q 005881 487 LSACVHIGLVEEGWHYFNSMIRDHGISPR---MDHIASVVHLFACRGQ---TRRAYEFIKSSPIEPNKV-VWRCLLSGCK 559 (672)
Q Consensus 487 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~~-~~~~l~~~~~ 559 (672)
...+.+.|++++|...+++..+...-.++ ...+..+...+...|+ +++|+.++++.+..|+.. .+..+...+.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 99999999999999999998754332222 3556777788888888 999999999876555433 5566777899
Q ss_pred hcCCHHHHHHHHHHHhcCC
Q 005881 560 THKDLVLGRYAAEKILSTD 578 (672)
Q Consensus 560 ~~g~~~~a~~~~~~~~~~~ 578 (672)
..|++++|...++++++..
T Consensus 348 ~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHH
Confidence 9999999999999987653
No 84
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.11 E-value=3.7e-09 Score=99.47 Aligned_cols=202 Identities=9% Similarity=-0.026 Sum_probs=119.7
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC----chhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC-HHHHHHH
Q 005881 415 VIGSALVDMYAKCGRLNDARKVFDHLSS--KN----LVSWNTMLVGYAQHGLGREALEIYSMMQENKI-KPN-DNTFIGV 486 (672)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~~~~~l 486 (672)
..+-.+...+.+.|++++|...|+.+.+ |+ ...+..+..+|...|++++|+..|++..+... .|. ...+..+
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 3344445555566666666666666542 22 23455555666666666666666666665311 111 1234445
Q ss_pred HHHhhc--------cCcHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005881 487 LSACVH--------IGLVEEGWHYFNSMIRDHGISPR-MDHIASVVHLFACRGQTRRAYEFIKSSPIEPNKVVWRCLLSG 557 (672)
Q Consensus 487 l~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 557 (672)
..++.. .|++++|...|+++.+.+ |+ ......+.......+.. ...+..+...
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~~ 157 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEAARL 157 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHHHHH
Confidence 555555 566666666666655332 22 11111111110000000 0113556777
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCC---CchHHHHHHHHHhc----------CChHHHHHHHHHHhhCCCccCCceeEEEe
Q 005881 558 CKTHKDLVLGRYAAEKILSTDPED---TSAHIMLSNVYAEA----------NMWDETAKVRKIMKEKSLKKDTGCSWTEL 624 (672)
Q Consensus 558 ~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 624 (672)
+...|+++.|+..++++++..|++ +.++..++.+|... |++++|.+.++++.+..+
T Consensus 158 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p----------- 226 (261)
T 3qky_A 158 YERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP----------- 226 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-----------
T ss_pred HHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-----------
Confidence 899999999999999999999984 45788999999977 999999999999876322
Q ss_pred CCEEEEEEeccccCCChHHHHHHHHHHHHHHHh
Q 005881 625 QNKMHYFSTSRFAQFQGIDLHEVMNQLSVHLFD 657 (672)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 657 (672)
.+|...+....+..+...+.+
T Consensus 227 ------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 ------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred ------------CChHHHHHHHHHHHHHHHHHH
Confidence 245556667677776666654
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.10 E-value=3.2e-10 Score=121.30 Aligned_cols=162 Identities=14% Similarity=0.148 Sum_probs=138.2
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 005881 413 NVVIGSALVDMYAKCGRLNDARKVFDHLS---SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPND-NTFIGVLS 488 (672)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~ 488 (672)
+...++.|...|.+.|++++|.+.|++.. ..+..+|+.+...|.+.|++++|++.|++.++ +.|+. ..|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 45667888899999999999999999876 34567899999999999999999999999998 46664 68899999
Q ss_pred HhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHH
Q 005881 489 ACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKS-SPIEP-NKVVWRCLLSGCKTHKDLV 565 (672)
Q Consensus 489 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~ 565 (672)
++...|++++|++.|++..+ +.| +...+..++.+|...|++++|++.+++ +.+.| +...|..+...+...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999998883 356 568899999999999999999999976 44566 5668889999999999999
Q ss_pred HHHHHHHHHhcCCC
Q 005881 566 LGRYAAEKILSTDP 579 (672)
Q Consensus 566 ~a~~~~~~~~~~~p 579 (672)
+|.+.+++++++.|
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 99999999987654
No 86
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.08 E-value=8.7e-11 Score=99.66 Aligned_cols=138 Identities=7% Similarity=-0.075 Sum_probs=88.6
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCCh
Q 005881 455 YAQHGLGREALEIYSMMQENKIKPND-NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQT 532 (672)
Q Consensus 455 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 532 (672)
+...|++++|+..+++.... .|+. ..+..+...|.+.|++++|++.|++..+ +.| +...|..++.+|.+.|++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCch
Confidence 33445566666666555442 3332 2344555666666666666666666652 234 456666666666666666
Q ss_pred HHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHhcCCCCCCchHHHHHHHHHhcCC
Q 005881 533 RRAYEFIKS-SPIEP-NKVVWRCLLSGCKTHKDLVLGRY-AAEKILSTDPEDTSAHIMLSNVYAEANM 597 (672)
Q Consensus 533 ~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 597 (672)
++|...|++ +.+.| +...|..+...+...|+.++|.. .++++++++|+++.+|...+.++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 666666654 23445 45677777777888888766554 4588888999888888888888887775
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.08 E-value=4.8e-10 Score=106.88 Aligned_cols=197 Identities=14% Similarity=0.163 Sum_probs=115.6
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C----CchhHHHHHHHHHhcCChHHHHHHHHHHHHC------CC
Q 005881 414 VVIGSALVDMYAKCGRLNDARKVFDHLSS-------K----NLVSWNTMLVGYAQHGLGREALEIYSMMQEN------KI 476 (672)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 476 (672)
..++..+...|...|++++|...|++..+ + ...+|..+...|...|++++|.+.|++.... .-
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 34455566666666666666666655431 1 1235666777777777777777777776653 11
Q ss_pred CCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhh-----CCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-------
Q 005881 477 KPN-DNTFIGVLSACVHIGLVEEGWHYFNSMIRDH-----GISP-RMDHIASVVHLFACRGQTRRAYEFIKSS------- 542 (672)
Q Consensus 477 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~------- 542 (672)
.|+ ..++..+...+...|++++|...++++.+.. +..| ....+..++.+|...|++++|.+.+++.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 122 2456777777778888888888777776431 1123 3456777778888888888887777542
Q ss_pred ---CCCCC-HHHHHHHHHHHHhcC------CHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 543 ---PIEPN-KVVWRCLLSGCKTHK------DLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 543 ---~~~p~-~~~~~~l~~~~~~~g------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
...|. ...|..+.......+ .+..+...++......|..+..+..++.+|...|++++|.+.+++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11222 223333333332222 233344444444444555667788999999999999999999988764
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.07 E-value=2.2e-09 Score=102.81 Aligned_cols=212 Identities=10% Similarity=-0.029 Sum_probs=135.8
Q ss_pred ChHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCChHHHHHHHHHHcCcCchHHHHHHHH
Q 005881 328 LLEESLKTFDEMDEHDVVSWNALIAGHLASCHYGEAIELLKDMLFE----GHCPNLYTYSNILNISSDIPAIEWGKQTHC 403 (672)
Q Consensus 328 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 403 (672)
++++|...|+.. ...|...|++++|++.|.+.... |-.++
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------------------- 75 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDE------------------------- 75 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHH-------------------------
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHH-------------------------
Confidence 477777766553 66677788888888887776542 11111
Q ss_pred HHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----chhHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 005881 404 CIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSS-----KN----LVSWNTMLVGYAQH-GLGREALEIYSMMQE 473 (672)
Q Consensus 404 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~ 473 (672)
...+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...|... |++++|+..|++..+
T Consensus 76 ---------~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~ 146 (292)
T 1qqe_A 76 ---------AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE 146 (292)
T ss_dssp ---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 022334445555555555555555544431 11 23577788888886 999999999988876
Q ss_pred CCCCCC-------HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCch-----HHHHHHHHHhhccCChHHHHHHHHh
Q 005881 474 NKIKPN-------DNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRM-----DHIASVVHLFACRGQTRRAYEFIKS 541 (672)
Q Consensus 474 ~g~~p~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (672)
. .|+ ..++..+...+...|++++|+..|++..+...-.+.. ..+..++.++...|++++|...+++
T Consensus 147 ~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 224 (292)
T 1qqe_A 147 W--YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE 224 (292)
T ss_dssp H--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG
T ss_pred H--HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3 221 2467788888999999999999999887432111221 2567788889999999999999986
Q ss_pred C-CCCCCHH------HHHHHHHHHH--hcCCHHHHHHHHHHHhcCCCCCCchHH
Q 005881 542 S-PIEPNKV------VWRCLLSGCK--THKDLVLGRYAAEKILSTDPEDTSAHI 586 (672)
Q Consensus 542 ~-~~~p~~~------~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~~ 586 (672)
. .+.|+.. .+..++.++. ..+++++|+..|+++++++|.+...+.
T Consensus 225 al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 225 GQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp GGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 3 4455422 2344455554 457799999999999998885544333
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.05 E-value=3.8e-10 Score=95.68 Aligned_cols=122 Identities=10% Similarity=-0.012 Sum_probs=101.3
Q ss_pred HHHHhhccCcHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHhhccCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcC
Q 005881 486 VLSACVHIGLVEEGWHYFNSMIRDHGISPR-MDHIASVVHLFACRGQTRRAYEFIKS-SPIEP-NKVVWRCLLSGCKTHK 562 (672)
Q Consensus 486 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g 562 (672)
|...+...|++++|+..++... ...|+ ...+..+..+|.+.|++++|.+.|++ +.+.| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4556778899999999998765 44553 45567799999999999999999986 34566 6778999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHH-HHHHhh
Q 005881 563 DLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKV-RKIMKE 610 (672)
Q Consensus 563 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~ 610 (672)
++++|+..|+++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887776 476654
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.03 E-value=1e-08 Score=93.85 Aligned_cols=179 Identities=13% Similarity=0.052 Sum_probs=115.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC--CCc----hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHH
Q 005881 416 IGSALVDMYAKCGRLNDARKVFDHLSS--KNL----VSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDN----TFIG 485 (672)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ 485 (672)
.+..+...+.+.|++++|...|+.+.+ |+. ..+..+..+|.+.|++++|+..|+++.+. .|+.. .+..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHH
Confidence 344455667777888888888877652 321 35666777777888888888888887764 34331 3333
Q ss_pred HHHHhhc------------------cCcHHHHHHHHHHhHHhhCCCCch-HHHHHHHHHhhccCChHHHHHHHHhCCCCC
Q 005881 486 VLSACVH------------------IGLVEEGWHYFNSMIRDHGISPRM-DHIASVVHLFACRGQTRRAYEFIKSSPIEP 546 (672)
Q Consensus 486 ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 546 (672)
+..++.. .|++++|...|+.+++ ..|+. ..+....... ......
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~P~~~~a~~a~~~l~----~~~~~~---------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR---GYPNSQYTTDATKRLV----FLKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHT---TCTTCTTHHHHHHHHH----HHHHHH----------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH---HCcCChhHHHHHHHHH----HHHHHH----------
Confidence 4444432 4566666666666652 23321 1111111100 000000
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC---chHHHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 005881 547 NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDT---SAHIMLSNVYAEANMWDETAKVRKIMKEKSLK 614 (672)
Q Consensus 547 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 614 (672)
......+...+...|+++.|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...++.
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00112445668889999999999999999999875 56889999999999999999999998876553
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.03 E-value=2.4e-08 Score=93.28 Aligned_cols=173 Identities=9% Similarity=0.019 Sum_probs=100.1
Q ss_pred HHHHHhhCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 005881 433 ARKVFDHLS---SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPN-DNTFIGVLSACVHIGLVEEGWHYFNSMIR 508 (672)
Q Consensus 433 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 508 (672)
|...|++.. .++..++..+..++...|++++|++++.+.+..|-.++ ...+..++..+.+.|+++.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 445555444 23334445566666666777777777766655432122 24556666666777777777777776652
Q ss_pred hhCCCC-----chHHHHHHHHH--hhc--cCChHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC-
Q 005881 509 DHGISP-----RMDHIASVVHL--FAC--RGQTRRAYEFIKSSPI-EPNKVVWRCLLSGCKTHKDLVLGRYAAEKILST- 577 (672)
Q Consensus 509 ~~~~~p-----~~~~~~~l~~~--~~~--~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 577 (672)
..| +..+...|+.+ ... .++.++|..+|+++.. .|+..+-..++.++.+.|++++|+..++.+++.
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 244 23444444433 222 2367777777766432 234222233344666677777777777766665
Q ss_pred ---------CCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 578 ---------DPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 578 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
+|+++.++..++.+....|+ +|.++++++.+
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 46677777677666666676 67777777765
No 92
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.02 E-value=6.5e-10 Score=119.68 Aligned_cols=167 Identities=10% Similarity=-0.034 Sum_probs=103.2
Q ss_pred HhcCCHHHHHHHHhhCC-----------CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhc
Q 005881 425 AKCGRLNDARKVFDHLS-----------SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPN-DNTFIGVLSACVH 492 (672)
Q Consensus 425 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~ 492 (672)
...|++++|.+.+++.. ..+...|..+...+...|++++|++.|++..+. .|+ ...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 44566666666666554 233445666666666777777777777776663 333 3456666666667
Q ss_pred cCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 005881 493 IGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRY 569 (672)
Q Consensus 493 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 569 (672)
.|++++|...|+++.+ +.| +...+..+..+|.+.|++++ .+.+++. ...| +...|..+..++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777766653 234 44666666777777777766 6666542 2334 44566666666777777777777
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHhcCC
Q 005881 570 AAEKILSTDPEDTSAHIMLSNVYAEANM 597 (672)
Q Consensus 570 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 597 (672)
.++++++++|++..++..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 7777777777666777777777655443
No 93
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.01 E-value=1.1e-07 Score=94.70 Aligned_cols=121 Identities=11% Similarity=-0.142 Sum_probs=53.8
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCChh----hHHHHHHHhhccCCchhHHHHHHHHHHhCCC---C--chHHHHHHHHH
Q 005881 252 GYAQLGKACEAIDLFVKMFSSGLMPSEV----TFSYVLGAFADVKETIGGRQLHSLIIKMGFS---S--FTFVANTVLDF 322 (672)
Q Consensus 252 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~li~~ 322 (672)
.+...|++++|...+++........+.. .+..+-..+...|+++.|...+....+.... + ...++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3445666666666666655543111111 2222333444455555555555554432100 0 01123334444
Q ss_pred HHccCChHHHHHHHhhCCC-------C----CcccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005881 323 YSKCELLEESLKTFDEMDE-------H----DVVSWNALIAGHLASCHYGEAIELLKDMLF 372 (672)
Q Consensus 323 ~~~~~~~~~a~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 372 (672)
+...|++++|...+++... + ....+..+...+...|++++|...+++...
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 163 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 163 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5555555555555544321 1 011233344455555555555555555443
No 94
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.00 E-value=4.7e-09 Score=99.98 Aligned_cols=175 Identities=7% Similarity=-0.048 Sum_probs=138.1
Q ss_pred HHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 005881 430 LNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPND-NTFIGVLSACVHIGLVEEGWHYFNSMIR 508 (672)
Q Consensus 430 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 508 (672)
.+...+.+......+...+..+...+...|++++|...|++..+. .|+. ..+..+...+...|++++|...++++..
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 334445555555455566777888889999999999999999884 5554 5788888999999999999999998863
Q ss_pred hhCCCCchHHHH-HHHHHhhccCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC--Cc
Q 005881 509 DHGISPRMDHIA-SVVHLFACRGQTRRAYEFIKS-SPIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPED--TS 583 (672)
Q Consensus 509 ~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~ 583 (672)
..|+..... .....+.+.++.++|.+.+++ +...| +...+..+...+...|++++|...++++++.+|++ ..
T Consensus 180 ---~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 ---QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp ---GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred ---hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 345543332 333346677888888888765 33455 67788899999999999999999999999999987 88
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHh
Q 005881 584 AHIMLSNVYAEANMWDETAKVRKIMK 609 (672)
Q Consensus 584 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 609 (672)
++..++.+|...|+.++|...+++..
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999999999888754
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.99 E-value=6.8e-09 Score=97.60 Aligned_cols=202 Identities=8% Similarity=-0.009 Sum_probs=140.4
Q ss_pred ChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCC--cccHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC----chhHH
Q 005881 378 NLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDS--NVVIGSALVDMYAKCGRLNDARKVFDHLSS--KN----LVSWN 449 (672)
Q Consensus 378 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~ 449 (672)
+...+......+.+.|++++|...++.+++..... ....+..+..+|.+.|++++|...|+.+.+ |+ ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 45566666778889999999999999999875322 156677888999999999999999999873 32 23677
Q ss_pred HHHHHHHh--------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHH
Q 005881 450 TMLVGYAQ--------HGLGREALEIYSMMQENKIKPNDN-TFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIA 520 (672)
Q Consensus 450 ~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 520 (672)
.+..++.. .|++++|+..|++.++. .|+.. ....+ ..+..+... -...+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~~~ 152 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARKQY 152 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHHHH
Confidence 78888888 99999999999999984 45532 22111 111111100 012355
Q ss_pred HHHHHhhccCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHhcCCCCCCch-
Q 005881 521 SVVHLFACRGQTRRAYEFIKSS-PIEPN----KVVWRCLLSGCKTH----------KDLVLGRYAAEKILSTDPEDTSA- 584 (672)
Q Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~- 584 (672)
.++.+|.+.|++++|...+++. ...|+ ...+..+..++... |++++|...++++++..|+++..
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 6777788888888888887653 12232 34566666666655 89999999999999999988643
Q ss_pred --HHHHHHHHHhcCChHH
Q 005881 585 --HIMLSNVYAEANMWDE 600 (672)
Q Consensus 585 --~~~l~~~~~~~g~~~~ 600 (672)
...+..++...|++++
T Consensus 233 ~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 233 TAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 4455555655555543
No 96
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.98 E-value=4.2e-08 Score=91.62 Aligned_cols=240 Identities=8% Similarity=-0.023 Sum_probs=157.6
Q ss_pred HHccCChHHHHHHHhhCCCCCccc-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHH
Q 005881 323 YSKCELLEESLKTFDEMDEHDVVS-WNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQT 401 (672)
Q Consensus 323 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 401 (672)
..-.|.+..++.-...+...+... ---+.++|...|+++.. ..-.|....+..+...+ ..+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHH
Confidence 344677777776555554322222 22234677777766531 11233333333333322 222 4556
Q ss_pred HHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCC-----CchhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005881 402 HCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSK-----NLVSWNTMLVGYAQHGLGREALEIYSMMQENKI 476 (672)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 476 (672)
++...+.+ .++......+..++...|++++|.+++.+.... +...+-.++..+.+.|+.+.|.+.+++|.+ .
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~ 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--A 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence 66665554 334444557788888999999999999987432 345677788899999999999999999988 4
Q ss_pred CC-----CHHHHHHHHHH--hhccC--cHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhCCC---
Q 005881 477 KP-----NDNTFIGVLSA--CVHIG--LVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSSPI--- 544 (672)
Q Consensus 477 ~p-----~~~~~~~ll~~--~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 544 (672)
.| +..+...+..+ ....| ++.+|..+|+++.. ..|+......+..++.+.|++++|.+.++.+..
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~---~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ---TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 77 36666667666 33334 89999999999873 345533334444489999999999999875321
Q ss_pred --------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCch
Q 005881 545 --------EP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSA 584 (672)
Q Consensus 545 --------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 584 (672)
.| ++.+...++......|+ .|.++++++.+..|+++..
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 25 45566566666666777 8899999999999988654
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.97 E-value=2.1e-08 Score=82.96 Aligned_cols=129 Identities=20% Similarity=0.240 Sum_probs=80.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhh
Q 005881 448 WNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFA 527 (672)
Q Consensus 448 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 527 (672)
|..+...+...|++++|.++|+++.+.+ +.+...+..+...+...|++++|...++.+... .
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~-------------- 65 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---D-------------- 65 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---C--------------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---C--------------
Confidence 4455555556666666666666655532 223344445555555555555555555554421 1
Q ss_pred ccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHH
Q 005881 528 CRGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKI 607 (672)
Q Consensus 528 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 607 (672)
..+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.+++
T Consensus 66 -----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 66 -----------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp -----------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred -----------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 123445666666677777777888888877777777777777888888888888888888877
Q ss_pred HhhC
Q 005881 608 MKEK 611 (672)
Q Consensus 608 ~~~~ 611 (672)
+.+.
T Consensus 129 ~~~~ 132 (136)
T 2fo7_A 129 ALEL 132 (136)
T ss_dssp HHHH
T ss_pred HHcc
Confidence 6553
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.97 E-value=5.8e-08 Score=87.69 Aligned_cols=172 Identities=5% Similarity=-0.062 Sum_probs=136.9
Q ss_pred HHHHHhhCC-CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC----cHHHHHHHHHHhH
Q 005881 433 ARKVFDHLS-SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIG----LVEEGWHYFNSMI 507 (672)
Q Consensus 433 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~ 507 (672)
|.+.|++.. ..++..+..+...|...+++++|++.|++..+.| +...+..+...|.. + ++++|..+|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444444443 3566778888888888999999999999998865 45666777777777 6 8999999999886
Q ss_pred HhhCCCCchHHHHHHHHHhhc----cCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHh
Q 005881 508 RDHGISPRMDHIASVVHLFAC----RGQTRRAYEFIKSS-PIEPN---KVVWRCLLSGCKT----HKDLVLGRYAAEKIL 575 (672)
Q Consensus 508 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~~ 575 (672)
+ .-++..+..|..+|.. .+++++|.+++++. ...|. +..+..|...|.. .++.++|...++++.
T Consensus 81 ~----~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 E----AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp H----TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred H----CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 3 2356778888888887 88999999999874 34443 7788888888887 789999999999999
Q ss_pred cCCCCCCchHHHHHHHHHhc-C-----ChHHHHHHHHHHhhCCC
Q 005881 576 STDPEDTSAHIMLSNVYAEA-N-----MWDETAKVRKIMKEKSL 613 (672)
Q Consensus 576 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~ 613 (672)
++ |.++.++..|+.+|... | ++++|.+.+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 98 66888999999999864 3 89999999998876543
No 99
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.95 E-value=2e-08 Score=95.55 Aligned_cols=165 Identities=13% Similarity=0.108 Sum_probs=105.6
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C----CchhHHHHHHHHHhcCChHHHHHHHHHHHHC------CC
Q 005881 414 VVIGSALVDMYAKCGRLNDARKVFDHLSS-------K----NLVSWNTMLVGYAQHGLGREALEIYSMMQEN------KI 476 (672)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 476 (672)
..++..+...|...|++++|.+.|++... + ...+|..+...|...|++++|.+.|+++.+. +-
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 34556666677777777777777666541 1 1346777888888889999999998888763 11
Q ss_pred CCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhh------CCCC-chHHHHHHHHHhhccC------ChHHHHHHHHhC
Q 005881 477 KPN-DNTFIGVLSACVHIGLVEEGWHYFNSMIRDH------GISP-RMDHIASVVHLFACRG------QTRRAYEFIKSS 542 (672)
Q Consensus 477 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g------~~~~A~~~~~~~ 542 (672)
.|+ ..++..+...+...|++++|...++.+.+.. ...+ ....+..+...+...+ .+.++...++..
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 333 2468888889999999999999998887431 1122 2234444444443333 344555555555
Q ss_pred CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 005881 543 PI-EP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTD 578 (672)
Q Consensus 543 ~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 578 (672)
.. .| ...++..+...+...|++++|...++++++..
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 42 23 34467788888999999999999999998763
No 100
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.94 E-value=3.5e-09 Score=89.14 Aligned_cols=101 Identities=12% Similarity=0.016 Sum_probs=87.2
Q ss_pred CCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHH
Q 005881 511 GISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIM 587 (672)
Q Consensus 511 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 587 (672)
.+.| +...+..++..+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..|+++++++|+++.++..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 4555 3567777888888888888888888763 3456 67789999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhC
Q 005881 588 LSNVYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 588 l~~~~~~~g~~~~a~~~~~~~~~~ 611 (672)
++.+|...|++++|.+.+++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999998764
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.92 E-value=1.1e-08 Score=108.19 Aligned_cols=158 Identities=10% Similarity=-0.002 Sum_probs=122.8
Q ss_pred cCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHH
Q 005881 427 CGRLNDARKVFDHLSS---KNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPN-DNTFIGVLSACVHIGLVEEGWHY 502 (672)
Q Consensus 427 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 502 (672)
.|++++|.+.|++..+ .+...|..+...|...|++++|.+.|++..+. .|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998873 34568899999999999999999999999985 454 56888899999999999999999
Q ss_pred HHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHhc
Q 005881 503 FNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTH---KDLVLGRYAAEKILS 576 (672)
Q Consensus 503 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 576 (672)
+++..+. .| +...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9998843 45 5788999999999999999999999863 3345 567888888899999 999999999999999
Q ss_pred CCCCCCchHHHHH
Q 005881 577 TDPEDTSAHIMLS 589 (672)
Q Consensus 577 ~~p~~~~~~~~l~ 589 (672)
.+|++...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999988888776
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.89 E-value=1.6e-08 Score=88.39 Aligned_cols=155 Identities=8% Similarity=-0.005 Sum_probs=94.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHH-hhc
Q 005881 451 MLVGYAQHGLGREALEIYSMMQENKIKPN-DNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHL-FAC 528 (672)
Q Consensus 451 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~ 528 (672)
+...+...|++++|...|++..+. .|+ ...+..+...+...|++++|...++.+... .|+...+..+... +..
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHh
Confidence 344445555555555555554442 232 234444555555555555555555544422 2222222111111 111
Q ss_pred cCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC--CchHHHHHHHHHhcCChHHHHHH
Q 005881 529 RGQTRRAYEFIKS-SPIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPED--TSAHIMLSNVYAEANMWDETAKV 604 (672)
Q Consensus 529 ~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~ 604 (672)
.+...+|.+.+++ +...| +...+..+...+...|++++|...++++++.+|+. +..+..++.+|...|+.++|...
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 1222234555543 22345 56788888889999999999999999999999975 55899999999999999999999
Q ss_pred HHHHhh
Q 005881 605 RKIMKE 610 (672)
Q Consensus 605 ~~~~~~ 610 (672)
+++...
T Consensus 167 y~~al~ 172 (176)
T 2r5s_A 167 YRRQLY 172 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987653
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.89 E-value=1.6e-08 Score=91.24 Aligned_cols=151 Identities=11% Similarity=0.106 Sum_probs=109.7
Q ss_pred HHhcCCHHHHHHHHhhCCC--C-CchhHHH----------------HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHH
Q 005881 424 YAKCGRLNDARKVFDHLSS--K-NLVSWNT----------------MLVGYAQHGLGREALEIYSMMQENKIKPN-DNTF 483 (672)
Q Consensus 424 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~ 483 (672)
+...|++++|...|+...+ | +...|.. +...|...|++++|+..|++.++. .|+ ...+
T Consensus 14 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 91 (208)
T 3urz_A 14 AIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APNNVDCL 91 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHH
Confidence 4455566666666555542 1 1223444 888999999999999999999984 555 4678
Q ss_pred HHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCC--hHHHHHHHHhCCCCCCHH--HHHHHHHHH
Q 005881 484 IGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQ--TRRAYEFIKSSPIEPNKV--VWRCLLSGC 558 (672)
Q Consensus 484 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~p~~~--~~~~l~~~~ 558 (672)
..+..++...|++++|...|++..+ +.| +...+..++.+|...|. .+.+...++... .|++. .+.....++
T Consensus 92 ~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~ 167 (208)
T 3urz_A 92 EACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSK 167 (208)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHH
Confidence 8899999999999999999999884 356 57888889988876654 344556665543 44443 344455566
Q ss_pred HhcCCHHHHHHHHHHHhcCCCC
Q 005881 559 KTHKDLVLGRYAAEKILSTDPE 580 (672)
Q Consensus 559 ~~~g~~~~a~~~~~~~~~~~p~ 580 (672)
...|++++|+..+++++++.|+
T Consensus 168 ~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 168 LFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHccCHHHHHHHHHHHHHhCCC
Confidence 7789999999999999999995
No 104
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.88 E-value=1.7e-08 Score=82.36 Aligned_cols=94 Identities=7% Similarity=0.080 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHh
Q 005881 517 DHIASVVHLFACRGQTRRAYEFIKS-SPIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAE 594 (672)
Q Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 594 (672)
..+...+..|.+.|++++|++.|++ +...| +...|..+..++...|++++|+..++++++++|+++.+|..++.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 4455556666666666666666654 22334 455666666666677777777777777777777777777777777777
Q ss_pred cCChHHHHHHHHHHhh
Q 005881 595 ANMWDETAKVRKIMKE 610 (672)
Q Consensus 595 ~g~~~~a~~~~~~~~~ 610 (672)
.|++++|.+.+++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7777777777776654
No 105
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.87 E-value=6.8e-09 Score=87.56 Aligned_cols=101 Identities=10% Similarity=0.003 Sum_probs=84.5
Q ss_pred CCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHH
Q 005881 511 GISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIM 587 (672)
Q Consensus 511 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 587 (672)
.+.| +...+..++..+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 4455 4566777788888888888888888753 3345 67788888888999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhC
Q 005881 588 LSNVYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 588 l~~~~~~~g~~~~a~~~~~~~~~~ 611 (672)
++.+|...|++++|.+.+++..+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999988653
No 106
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.87 E-value=8.4e-09 Score=84.14 Aligned_cols=114 Identities=12% Similarity=0.064 Sum_probs=90.5
Q ss_pred CCCCH-HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHh-CCCCC-CHHHH
Q 005881 476 IKPND-NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKS-SPIEP-NKVVW 551 (672)
Q Consensus 476 ~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~ 551 (672)
+.|+. ..+......+.+.|++++|+..|++.++. .| +...|..++.+|.+.|++++|++.+++ +.+.| +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 45554 35667777888888888888888877732 44 567788888888888888888888875 33445 56788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 005881 552 RCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVY 592 (672)
Q Consensus 552 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 592 (672)
..+..++...|++++|+..|+++++++|+++.++..++.++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 88999999999999999999999999999999888887653
No 107
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.87 E-value=3.5e-08 Score=95.08 Aligned_cols=219 Identities=9% Similarity=-0.013 Sum_probs=150.1
Q ss_pred cCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcC-cCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHH
Q 005881 357 SCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSD-IPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARK 435 (672)
Q Consensus 357 ~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 435 (672)
.|++++|.+++++..+.. +.. +.. .++++.|...+..+ ...|...|++++|.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KTS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CCC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--ccc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 456777888777766431 110 111 45666666665443 456777788888888
Q ss_pred HHhhCCC-----CC----chhHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHhhccCcHHHHHH
Q 005881 436 VFDHLSS-----KN----LVSWNTMLVGYAQHGLGREALEIYSMMQENK---IKPN--DNTFIGVLSACVHIGLVEEGWH 501 (672)
Q Consensus 436 ~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~~~~~ll~~~~~~g~~~~a~~ 501 (672)
.|.+... .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 7776542 12 2377888889999999999999999876521 1222 2467788888888 99999999
Q ss_pred HHHHhHHhhCCCC----chHHHHHHHHHhhccCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 005881 502 YFNSMIRDHGISP----RMDHIASVVHLFACRGQTRRAYEFIKSS-------PIEPN-KVVWRCLLSGCKTHKDLVLGRY 569 (672)
Q Consensus 502 ~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~a~~ 569 (672)
.|++......-.. ....+..+..+|.+.|++++|++.+++. +..+. ...+..+...+...|+++.|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9998874321111 1467888999999999999999998753 11111 2255566666778899999999
Q ss_pred HHHHHhcCCCCCCch-----HHHHHHHHHhcCChHHHHHH
Q 005881 570 AAEKILSTDPEDTSA-----HIMLSNVYAEANMWDETAKV 604 (672)
Q Consensus 570 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~~ 604 (672)
.+++++ +.|..... ...++..+ ..|+.+.+.++
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999 99976543 33455555 56777766663
No 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.82 E-value=2.4e-08 Score=90.03 Aligned_cols=158 Identities=10% Similarity=0.099 Sum_probs=121.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHH----------------HHHHhhccCcHHHHHHHHHHhHHhh
Q 005881 448 WNTMLVGYAQHGLGREALEIYSMMQENKIKPND-NTFIG----------------VLSACVHIGLVEEGWHYFNSMIRDH 510 (672)
Q Consensus 448 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~----------------ll~~~~~~g~~~~a~~~~~~~~~~~ 510 (672)
+-.....+...|++++|+..|++..+ ..|+. ..+.. +..++...|++++|+..|++..+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-- 82 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ-- 82 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 33455677889999999999999998 46665 35666 88889999999999999999884
Q ss_pred CCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHhcCCCCCCchH
Q 005881 511 GISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHK--DLVLGRYAAEKILSTDPEDTSAH 585 (672)
Q Consensus 511 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~ 585 (672)
+.| +...+..++.+|...|++++|.+.|++. ...| +..+|..+...+...| +.+.+...+++++...| ....+
T Consensus 83 -~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~ 160 (208)
T 3urz_A 83 -KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYAR 160 (208)
T ss_dssp -HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHH
T ss_pred -HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHH
Confidence 356 6788999999999999999999999863 4556 5668888888776554 34556667777665444 22356
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhC
Q 005881 586 IMLSNVYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 586 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 611 (672)
..++.++...|++++|...+++..+.
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 67788888999999999999998753
No 109
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.80 E-value=1.1e-07 Score=102.33 Aligned_cols=191 Identities=10% Similarity=0.051 Sum_probs=143.0
Q ss_pred cCcCchHHHHHHHHHHHh-------cCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcC
Q 005881 390 SDIPAIEWGKQTHCCIVK-------PGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLS---SKNLVSWNTMLVGYAQHG 459 (672)
Q Consensus 390 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 459 (672)
...+++++|.+.++...+ ...+.+...+..+...|.+.|++++|.+.|+++. ..+...|..+..+|...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 566677777777776661 1123355677788888999999999999999887 356678899999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHH
Q 005881 460 LGREALEIYSMMQENKIKPN-DNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYE 537 (672)
Q Consensus 460 ~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 537 (672)
++++|++.|++..+. .|+ ...+..+..++...|++++ +..|+++.+ +.| +...+..+..+|.+.|++++|.+
T Consensus 482 ~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 482 DYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp CHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999984 564 4678889999999999999 999998874 355 56889999999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHhcCCCCCCchHH
Q 005881 538 FIKSS-PIEPN-KVVWRCLLSGCKTHKD-----LVLGRYAAEKILSTDPEDTSAHI 586 (672)
Q Consensus 538 ~~~~~-~~~p~-~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~~~ 586 (672)
.+++. ...|+ ...|..+..++...++ .+...++.+.+..+.++++....
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~ 611 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQ 611 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHH
Confidence 99875 56776 4467777777666554 34455555555566665555443
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.80 E-value=6.8e-08 Score=102.18 Aligned_cols=147 Identities=12% Similarity=0.054 Sum_probs=78.7
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHH
Q 005881 459 GLGREALEIYSMMQENKIKPN-DNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAY 536 (672)
Q Consensus 459 g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 536 (672)
|++++|++.|++..+. .|+ ...+..+...+...|++++|...+++.. ...| +...+..++.+|...|++++|.
T Consensus 3 g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGL---ALHPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---TTSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 5566666666666553 333 3455666666666666666666666655 3344 3456666666666666666666
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhc---CChHHHHHHHHHHhh
Q 005881 537 EFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEA---NMWDETAKVRKIMKE 610 (672)
Q Consensus 537 ~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 610 (672)
+.+++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.+|... |++++|.+.+++..+
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 666542 2233 3455666666666666666666666666666666666666666666666 666666666665544
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.78 E-value=2.9e-08 Score=95.72 Aligned_cols=197 Identities=10% Similarity=-0.060 Sum_probs=148.1
Q ss_pred CcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 005881 391 DIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSM 470 (672)
Q Consensus 391 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 470 (672)
..|++++|.++++...+.... . .+...++++.|...|.. ....|...|++++|.+.|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 356778888888877754221 1 11115788888888765 46778899999999999998
Q ss_pred HHHC----CCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCC--C--chHHHHHHHHHhhccCChHHHHHHHHh
Q 005881 471 MQEN----KIKPN-DNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGIS--P--RMDHIASVVHLFACRGQTRRAYEFIKS 541 (672)
Q Consensus 471 m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--p--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (672)
..+. |-.+. ..+|..+...|...|++++|+..|++..+.+.-. | ....+..+..+|.. |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 8753 21111 2478888999999999999999999876432111 2 13678889999998 999999999875
Q ss_pred C-CCC-----C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC------chHHHHHHHHHhcCChHHHHHHHHH
Q 005881 542 S-PIE-----P--NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDT------SAHIMLSNVYAEANMWDETAKVRKI 607 (672)
Q Consensus 542 ~-~~~-----p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 607 (672)
. .+. + ...++..+...+...|++++|+..+++++++.|++. ..+..++.++...|++++|.+.+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2 111 1 145678888889999999999999999999876543 2667888889999999999999998
Q ss_pred Hh
Q 005881 608 MK 609 (672)
Q Consensus 608 ~~ 609 (672)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
No 112
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.78 E-value=9.3e-08 Score=86.56 Aligned_cols=126 Identities=11% Similarity=-0.058 Sum_probs=68.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhh
Q 005881 448 WNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFA 527 (672)
Q Consensus 448 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 527 (672)
+..+...+...|++++|++.|++. +.|+...+..+..++...|++++|...|+...+.. +.+...+..++.+|.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHH
Confidence 444555566666666666666655 24555566666666666666666666666655321 123445555555555
Q ss_pred ccCChHHHHHHHHhC-CCCC-----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 005881 528 CRGQTRRAYEFIKSS-PIEP-----------------NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDP 579 (672)
Q Consensus 528 ~~g~~~~A~~~~~~~-~~~p-----------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 579 (672)
..|++++|.+.+++. ...| ....|..+...+...|++++|...+++++++.|
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 555555555555432 1111 113444455555555555555555555555555
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.77 E-value=7.6e-08 Score=91.57 Aligned_cols=134 Identities=6% Similarity=-0.068 Sum_probs=112.7
Q ss_pred CCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCCCHHHHHHH
Q 005881 477 KPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEPNKVVWRCL 554 (672)
Q Consensus 477 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 554 (672)
+.+...+..+...+...|++++|...|+++.+. .| +...+..++.+|.+.|++++|.+.+++. ...|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 334456778888899999999999999998843 56 5688999999999999999999999986 356776644444
Q ss_pred HHH-HHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 005881 555 LSG-CKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKSL 613 (672)
Q Consensus 555 ~~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 613 (672)
... +...++.+.|...++++++.+|+++..+..++.+|...|++++|.+.++++.+...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p 250 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDL 250 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence 333 66778888999999999999999999999999999999999999999999876443
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.76 E-value=8.1e-07 Score=84.87 Aligned_cols=161 Identities=7% Similarity=-0.059 Sum_probs=119.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCc----hHHHH
Q 005881 450 TMLVGYAQHGLGREALEIYSMMQENK-IKPNDN----TFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPR----MDHIA 520 (672)
Q Consensus 450 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 520 (672)
..+..+...|++++|.+++++..+.. ..|+.. .+..+...+...|++++|+..|+.+.....-.++ ...++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667888899999999999988742 122221 2334666777788999999999988753222223 24688
Q ss_pred HHHHHhhccCChHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC------CchH
Q 005881 521 SVVHLFACRGQTRRAYEFIKSS--------PIEPN-KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPED------TSAH 585 (672)
Q Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 585 (672)
.++.+|...|++++|.+++++. ...|. ..++..+...|...|++++|...+++++++.+.. +.+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8999999999999998888653 22222 2367788888999999999999999999876433 5678
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHhh
Q 005881 586 IMLSNVYAEANM-WDETAKVRKIMKE 610 (672)
Q Consensus 586 ~~l~~~~~~~g~-~~~a~~~~~~~~~ 610 (672)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999995 6999999887653
No 115
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.76 E-value=2.6e-07 Score=76.24 Aligned_cols=121 Identities=17% Similarity=0.239 Sum_probs=83.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 005881 416 IGSALVDMYAKCGRLNDARKVFDHLS---SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVH 492 (672)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 492 (672)
.+..+...+...|++++|..+|+.+. ..+...|..+...+...|++++|..+|+++...+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 35667777888899999998888765 3456678888888999999999999999988753 3445677778888888
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHH
Q 005881 493 IGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFI 539 (672)
Q Consensus 493 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (672)
.|++++|...++.+.... +.+...+..++.++.+.|++++|.+.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHH
Confidence 888888888888776321 112333444444444444444444333
No 116
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.76 E-value=4.6e-08 Score=81.92 Aligned_cols=100 Identities=7% Similarity=-0.056 Sum_probs=83.4
Q ss_pred CCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHH
Q 005881 511 GISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIM 587 (672)
Q Consensus 511 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 587 (672)
.+.| +...+..++..+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++++|+++..+..
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3445 3456667777888888888888888753 3345 67788888888999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHhh
Q 005881 588 LSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 588 l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
++.+|...|++++|.+.+++..+
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999998865
No 117
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.75 E-value=8.4e-06 Score=83.55 Aligned_cols=202 Identities=10% Similarity=-0.043 Sum_probs=110.3
Q ss_pred hHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHH-HHHHhh
Q 005881 361 GEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDA-RKVFDH 439 (672)
Q Consensus 361 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~ 439 (672)
+.+..+|++++... +.+...|...+.-+.+.|+.+.|..+++..+.. +.+...+.. |+...+.++. ..+.+.
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHH
Confidence 34566777776642 334555666666666778888888888888877 333333222 2221111111 111111
Q ss_pred CC------------CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh-ccCcHHHHHHHHHHh
Q 005881 440 LS------------SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACV-HIGLVEEGWHYFNSM 506 (672)
Q Consensus 440 ~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~ 506 (672)
.. ......|-..+..+.+.++.+.|..+|++. .. ...+...|......-. ..++.+.|..+|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 10 001134555555555666777777777777 21 1122333322111111 123577777777777
Q ss_pred HHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005881 507 IRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKIL 575 (672)
Q Consensus 507 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 575 (672)
.+.++- ++..+...++.....|+.+.|..+|++.. .....|...+..-..+|+.+.+..++++..
T Consensus 347 l~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 347 LLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 654321 23445556666667777777777777763 245667776666666777777777776665
No 118
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.72 E-value=1e-06 Score=83.30 Aligned_cols=178 Identities=13% Similarity=0.173 Sum_probs=100.1
Q ss_pred CHHHHHHHHhhCC---CCCchhHHHHHHHH----Hhc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHH-
Q 005881 429 RLNDARKVFDHLS---SKNLVSWNTMLVGY----AQH---GLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVE- 497 (672)
Q Consensus 429 ~~~~A~~~~~~~~---~~~~~~~~~li~~~----~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~- 497 (672)
+++++.+.++.+. ..+..+|+.-...+ ... +++++++++++++.+.. +-|...|..-...+.+.|.++
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~ 162 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHND 162 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTC
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccCh
Confidence 5555555555544 22333444433333 333 55666666666666632 233345555444555555555
Q ss_pred -HHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCC------hHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCC-HHH
Q 005881 498 -EGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQ------TRRAYEFIKS-SPIEP-NKVVWRCLLSGCKTHKD-LVL 566 (672)
Q Consensus 498 -~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~------~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~-~~~ 566 (672)
++++.++.+.+. .| +...|+.-..++.+.|+ ++++++++++ +...| |...|+.+...+.+.|+ .+.
T Consensus 163 ~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~ 239 (306)
T 3dra_A 163 AKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQ 239 (306)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHH
Confidence 666666666532 23 44555555555555554 6666666654 23344 55667666666666555 333
Q ss_pred HHHHHHHHhcCC---CCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 567 GRYAAEKILSTD---PEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 567 a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
....++++++++ |.++.++..++++|.+.|+.++|.++++.+.+
T Consensus 240 ~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 240 LEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 455666666655 66667777777777777777777777777654
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.72 E-value=2.6e-07 Score=88.31 Aligned_cols=163 Identities=6% Similarity=-0.057 Sum_probs=119.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCc----hH
Q 005881 447 SWNTMLVGYAQHGLGREALEIYSMMQENKIKPND-----NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPR----MD 517 (672)
Q Consensus 447 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 517 (672)
.+...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|...++..........+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445677788899999999999888875322111 12344556677888999999999887632211111 35
Q ss_pred HHHHHHHHhhccCChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC------CC
Q 005881 518 HIASVVHLFACRGQTRRAYEFIKSS-------PIEPN--KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPE------DT 582 (672)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 582 (672)
.+..++..|...|++++|.+.+++. +..+. ..++..+...|...|++++|...+++++++.++ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888999999999999999888652 22221 257788888899999999999999999876542 15
Q ss_pred chHHHHHHHHHhcCChHHH-HHHHHHHh
Q 005881 583 SAHIMLSNVYAEANMWDET-AKVRKIMK 609 (672)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 609 (672)
.+|..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6788999999999999999 77777664
No 120
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.71 E-value=9.2e-08 Score=83.51 Aligned_cols=155 Identities=9% Similarity=-0.039 Sum_probs=114.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hhc
Q 005881 417 GSALVDMYAKCGRLNDARKVFDHLSS---KNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSA-CVH 492 (672)
Q Consensus 417 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~ 492 (672)
...+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++.... .|+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 34566678888999999999999873 45668888899999999999999999988764 4444332222111 112
Q ss_pred cCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHh-CCCCCC---HHHHHHHHHHHHhcCCHHHH
Q 005881 493 IGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKS-SPIEPN---KVVWRCLLSGCKTHKDLVLG 567 (672)
Q Consensus 493 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~---~~~~~~l~~~~~~~g~~~~a 567 (672)
.+...+|...+++..+ ..| +...+..++.++...|++++|.+.+++ +...|+ ...+..+...+...|+.++|
T Consensus 87 ~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 2223346778887773 356 578888999999999999999999876 344554 55788888889999999999
Q ss_pred HHHHHHHhc
Q 005881 568 RYAAEKILS 576 (672)
Q Consensus 568 ~~~~~~~~~ 576 (672)
...|++++.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988763
No 121
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.69 E-value=2.9e-07 Score=84.05 Aligned_cols=184 Identities=10% Similarity=-0.028 Sum_probs=129.4
Q ss_pred HHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCC--cccHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCch----hHHHH
Q 005881 380 YTYSNILNISSDIPAIEWGKQTHCCIVKPGFDS--NVVIGSALVDMYAKCGRLNDARKVFDHLS--SKNLV----SWNTM 451 (672)
Q Consensus 380 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~----~~~~l 451 (672)
..+......+...|++++|...++.+.+..... ....+..+..+|.+.|++++|...|+++. .|+.. .+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 344455667888999999999999999864332 23567778899999999999999999986 23322 45555
Q ss_pred HHHHHh------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHHHHHHHHHhHHhhCC
Q 005881 452 LVGYAQ------------------HGLGREALEIYSMMQENKIKPNDN-TFIGVLSACVHIGLVEEGWHYFNSMIRDHGI 512 (672)
Q Consensus 452 i~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 512 (672)
..++.. .|++++|+..|+++++. .|+.. ....... ...+...+.
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~----- 147 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA----- 147 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH-----
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH-----
Confidence 555554 57899999999999985 56653 2211110 001111111
Q ss_pred CCchHHHHHHHHHhhccCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCch
Q 005881 513 SPRMDHIASVVHLFACRGQTRRAYEFIKSS-PIEPN----KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSA 584 (672)
Q Consensus 513 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 584 (672)
.....++..|.+.|++++|...++++ ...|+ ...+..+..++.+.|+.++|+..++++....|++...
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 12235678888999999999998763 22343 2467788888999999999999999999999976543
No 122
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.69 E-value=3e-08 Score=94.02 Aligned_cols=190 Identities=8% Similarity=-0.023 Sum_probs=131.6
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 005881 414 VVIGSALVDMYAKCGRLNDARKVFDHLS---SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPN-DNTFIGVLSA 489 (672)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~ 489 (672)
...+..+...+.+.|++++|...|+... ..+...|..+...|...|++++|++.+++..+. .|+ ...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3455667778888899999999998775 346678888999999999999999999999884 454 4578888889
Q ss_pred hhccCcHHHHHHHHHHhHHhhCCCCch-HHHHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005881 490 CVHIGLVEEGWHYFNSMIRDHGISPRM-DHIASVVHLFACRGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGR 568 (672)
Q Consensus 490 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 568 (672)
+...|++++|...|+...+. .|+. ..+...+....+..+...... .......++......+ ..+ ..|+.++|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence 99999999999999887743 2211 111111111111111111111 2222223343333333 333 368999999
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHHhc-CChHHHHHHHHHHhhC
Q 005881 569 YAAEKILSTDPEDTSAHIMLSNVYAEA-NMWDETAKVRKIMKEK 611 (672)
Q Consensus 569 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 611 (672)
..++++++++|++......+..++.+. +.+++|.++|+++.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998887777888888776 7899999999988653
No 123
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.64 E-value=2.4e-07 Score=75.63 Aligned_cols=95 Identities=7% Similarity=0.002 Sum_probs=78.2
Q ss_pred hHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 005881 516 MDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYA 593 (672)
Q Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 593 (672)
...+..++..+.+.|++++|.+.|++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345666677777777777777777652 3344 56788888888999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHhh
Q 005881 594 EANMWDETAKVRKIMKE 610 (672)
Q Consensus 594 ~~g~~~~a~~~~~~~~~ 610 (672)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 99999999999998865
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.64 E-value=1.2e-06 Score=79.10 Aligned_cols=150 Identities=9% Similarity=-0.005 Sum_probs=117.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHH
Q 005881 418 SALVDMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVE 497 (672)
Q Consensus 418 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 497 (672)
..+...+...|++++|.+.|++...++...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 4566778889999999999999998888999999999999999999999999999853 344568888999999999999
Q ss_pred HHHHHHHHhHHhhC-------------CCC-chHHHHHHHHHhhccCChHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcC
Q 005881 498 EGWHYFNSMIRDHG-------------ISP-RMDHIASVVHLFACRGQTRRAYEFIKS-SPIEPNKVVWRCLLSGCKTHK 562 (672)
Q Consensus 498 ~a~~~~~~~~~~~~-------------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~l~~~~~~~g 562 (672)
+|...|+...+... ..| ....+..++.+|...|++++|.+.+++ +...|+. ..+
T Consensus 89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----------~~~ 157 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP-----------RHS 157 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG-----------GGG
T ss_pred HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc-----------ccc
Confidence 99999999885322 112 237888999999999999999999986 3556654 224
Q ss_pred CHHHHHHHHHHHhcCCC
Q 005881 563 DLVLGRYAAEKILSTDP 579 (672)
Q Consensus 563 ~~~~a~~~~~~~~~~~p 579 (672)
..+.+...+++.....|
T Consensus 158 ~~~~a~~~~~~~~~~~~ 174 (213)
T 1hh8_A 158 KIDKAMECVWKQKLYEP 174 (213)
T ss_dssp HHHHHHHHHHTTCCCCC
T ss_pred hHHHHHHHHHhcccccc
Confidence 45555555554443333
No 125
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.64 E-value=1.1e-07 Score=92.65 Aligned_cols=94 Identities=14% Similarity=0.030 Sum_probs=77.7
Q ss_pred hHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 005881 516 MDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYA 593 (672)
Q Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 593 (672)
...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++...|++++|+..++++++++|+++.++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 356777777888888888888777652 3344 66788888999999999999999999999999999999999999999
Q ss_pred hcCChHHH-HHHHHHHh
Q 005881 594 EANMWDET-AKVRKIMK 609 (672)
Q Consensus 594 ~~g~~~~a-~~~~~~~~ 609 (672)
..|++++| .+.++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999 44555553
No 126
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.63 E-value=2.5e-05 Score=80.04 Aligned_cols=101 Identities=11% Similarity=-0.000 Sum_probs=64.8
Q ss_pred cCC-CchhHHHHHHHhHhCCCCCCcccHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC-hHHH
Q 005881 53 QIG-MPEVALNYFRLMVCCVLEPNYYTYVGAVSACASRGDARSGKEIHGRMYRSGLELNSHVSNCLINMYGKCGL-LSSA 130 (672)
Q Consensus 53 ~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~a 130 (672)
+.| ++..|..+|+.+... -|. ++++.+.++|+..+.. .|+..+|...+....+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 377788888877653 233 8899999999988885 4688888888887777663 3445
Q ss_pred HHHhhccC------CCCcccHHHHHHHHH----hcCChHHHHHHHHHHHhC
Q 005881 131 QFVFDASL------ERNSISWVSLLSSYC----QCGEHVHGLKIFLLSRKS 171 (672)
Q Consensus 131 ~~~~~~~~------~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~ 171 (672)
..+|+... ..+...|...+..+. .+++.+.+.++|++....
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC
Confidence 55665432 124566777776543 245677788888888763
No 127
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.63 E-value=6.2e-07 Score=82.62 Aligned_cols=181 Identities=7% Similarity=-0.035 Sum_probs=128.0
Q ss_pred hcCCHHHHHHHHhhCCC--C-CchhHHHH-------HHHHHhcCChHHHHHHHHHHHHCCCCCCHH--------------
Q 005881 426 KCGRLNDARKVFDHLSS--K-NLVSWNTM-------LVGYAQHGLGREALEIYSMMQENKIKPNDN-------------- 481 (672)
Q Consensus 426 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------------- 481 (672)
..++.+.|.+.|.++.. | ....|+.+ ...+...++..+++..+.+-.. +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46788888888888762 3 34577766 4555555555555555555444 333321
Q ss_pred --------HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhCCCCCCH----H
Q 005881 482 --------TFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSSPIEPNK----V 549 (672)
Q Consensus 482 --------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~ 549 (672)
....+...+...|++++|.+.|+.+. ...|+......+...+.+.|++++|++.|+.....|++ .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~---~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAP---VAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSC---CTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 22345667788899999999998775 23464336666777888999999999999865433433 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCC--CC-CCchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 005881 550 VWRCLLSGCKTHKDLVLGRYAAEKILSTD--PE-DTSAHIMLSNVYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 550 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 611 (672)
.+..+..++...|++++|+..|+++.... |. .+.....++.++.+.|+.++|...|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 56667777889999999999999998543 54 4457888999999999999999999988764
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.62 E-value=2.7e-07 Score=75.97 Aligned_cols=113 Identities=12% Similarity=0.030 Sum_probs=72.0
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005881 482 TFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGC 558 (672)
Q Consensus 482 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 558 (672)
.+..+...+...|++++|...|+... ...| +...+..++.++...|++++|.+.+++. ...| +...|..+...+
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAI---KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHH---TTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 34444444555555555555555444 2223 3444555555555555555555555432 1223 456777777888
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCC
Q 005881 559 KTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANM 597 (672)
Q Consensus 559 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 597 (672)
...|++++|...++++++++|++...+..++.++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888999999999999999999888888888888887664
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.62 E-value=4.3e-07 Score=78.17 Aligned_cols=126 Identities=7% Similarity=0.012 Sum_probs=90.5
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005881 482 TFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGC 558 (672)
Q Consensus 482 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 558 (672)
.+..+...+...|++++|...|+..... .| +...+..++.++...|++++|.+.+++. ...| +...|..+...+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3445555566666666666666666532 23 4566666667777777777777766542 2233 566788888889
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCchHHH--HHHHHHhcCChHHHHHHHHHHhh
Q 005881 559 KTHKDLVLGRYAAEKILSTDPEDTSAHIM--LSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 559 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
...|++++|...+++++++.|++...+.. ++..+...|++++|.+.+.....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999998888754 44448889999999999887643
No 130
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.62 E-value=9.2e-07 Score=79.70 Aligned_cols=172 Identities=10% Similarity=-0.052 Sum_probs=127.0
Q ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCchhHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 005881 398 GKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLS-SKNLVSWNTMLVGYAQHG----LGREALEIYSMMQ 472 (672)
Q Consensus 398 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 472 (672)
|.+.+....+.| ++..+..+...|...+++++|.+.|++.. ..++..+..|...|.. + ++++|+++|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 334444444443 45556677777888888888888888876 3456677777777777 6 8999999999998
Q ss_pred HCCCCCCHHHHHHHHHHhhc----cCcHHHHHHHHHHhHHhhCCCCc---hHHHHHHHHHhhc----cCChHHHHHHHHh
Q 005881 473 ENKIKPNDNTFIGVLSACVH----IGLVEEGWHYFNSMIRDHGISPR---MDHIASVVHLFAC----RGQTRRAYEFIKS 541 (672)
Q Consensus 473 ~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~ 541 (672)
+.| +...+..|...+.. .+++++|..+|++.. ...|. +..+..|..+|.. .++.++|.++|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~---~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAA---RDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT---SSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH---HcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 854 45667777777776 789999999998876 33443 6788888888888 8899999999986
Q ss_pred CC-CCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHhcCCC
Q 005881 542 SP-IEPNKVVWRCLLSGCKTH-K-----DLVLGRYAAEKILSTDP 579 (672)
Q Consensus 542 ~~-~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~p 579 (672)
.- ..++...+..|...|... | +.++|...++++.+..+
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 42 224555677777776543 3 89999999999988764
No 131
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.60 E-value=1.6e-05 Score=75.07 Aligned_cols=224 Identities=12% Similarity=0.035 Sum_probs=154.1
Q ss_pred hhHHHHHHHHHHhCCCCCChHH-HHHHHHHHcCcC--chHHHHHHHHHHHhcCCCCcccHHHHHHHHH----Hhc---CC
Q 005881 360 YGEAIELLKDMLFEGHCPNLYT-YSNILNISSDIP--AIEWGKQTHCCIVKPGFDSNVVIGSALVDMY----AKC---GR 429 (672)
Q Consensus 360 ~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~ 429 (672)
.++|+++++.++.. .|+..| ++.--..+...+ +++++...++.++..+.+ +..+|+.-...+ ... ++
T Consensus 49 s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 49 SERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 34566666665543 443332 333333344444 666666666666654432 233333322222 333 78
Q ss_pred HHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCc------HHH
Q 005881 430 LNDARKVFDHLS---SKNLVSWNTMLVGYAQHGLGR--EALEIYSMMQENKIKPNDNTFIGVLSACVHIGL------VEE 498 (672)
Q Consensus 430 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~------~~~ 498 (672)
++++.++++.+. ..|..+|+.-.-.+...|+++ ++++.++++++.. +-|...|+.....+.+.|. +++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 899999998887 456678888888888889888 9999999999864 3455667666666666666 899
Q ss_pred HHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHH-HHHHHHhCC-C----CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005881 499 GWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRR-AYEFIKSSP-I----EPNKVVWRCLLSGCKTHKDLVLGRYAA 571 (672)
Q Consensus 499 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~-~----~p~~~~~~~l~~~~~~~g~~~~a~~~~ 571 (672)
+++.++.++. ..| |...|+.+..++.+.|+..+ +.++.++.- . ..+...+..++..+.+.|+.++|.+++
T Consensus 205 El~~~~~aI~---~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 205 ELNYVKDKIV---KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 9999998884 355 67889899999988888555 445666531 1 237788999999999999999999999
Q ss_pred HHHhc-CCCCCCchHHHHHH
Q 005881 572 EKILS-TDPEDTSAHIMLSN 590 (672)
Q Consensus 572 ~~~~~-~~p~~~~~~~~l~~ 590 (672)
+.+.+ .+|-....|...+.
T Consensus 282 ~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 282 DLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHhccChHHHHHHHHHHh
Confidence 99996 89987777765544
No 132
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.59 E-value=1.4e-07 Score=82.36 Aligned_cols=119 Identities=10% Similarity=0.106 Sum_probs=73.4
Q ss_pred hccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCH--H
Q 005881 491 VHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSG-CKTHKDL--V 565 (672)
Q Consensus 491 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~g~~--~ 565 (672)
...|++++|...++...... +.+...+..++.+|...|++++|.+.+++. ...| +...|..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 34455555655555554321 124455566666666666666666666542 1223 45556666666 6677777 7
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 005881 566 LGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 566 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 611 (672)
+|...++++++.+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8888888888888877777778888888888888888888777653
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.58 E-value=1.8e-07 Score=78.64 Aligned_cols=103 Identities=11% Similarity=0.074 Sum_probs=85.9
Q ss_pred CCCCHH-HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHH
Q 005881 476 IKPNDN-TFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVW 551 (672)
Q Consensus 476 ~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 551 (672)
+.|+.. .+..+...+.+.|++++|...|+.+.. +.| +...|..++.+|...|++++|++.|++. .+.| ++..|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 456553 677788888999999999999998884 356 6788999999999999999999999763 3455 56688
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 005881 552 RCLLSGCKTHKDLVLGRYAAEKILSTDPED 581 (672)
Q Consensus 552 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 581 (672)
..+..++...|++++|+..|++++++.|++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 889999999999999999999999999964
No 134
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.58 E-value=6.3e-08 Score=81.56 Aligned_cols=115 Identities=9% Similarity=-0.034 Sum_probs=84.6
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CC
Q 005881 468 YSMMQENKIKPND-NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PI 544 (672)
Q Consensus 468 ~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 544 (672)
|+++.. +.|+. ..+..+...+...|++++|...|+.+... .| +...|..+..+|...|++++|.+.+++. ..
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 444444 34544 35666777777888888888888877632 44 5677778888888888888888888753 33
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHH
Q 005881 545 EP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIM 587 (672)
Q Consensus 545 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 587 (672)
.| ++..|..+..++...|++++|+..+++++++.|+++.....
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 44 55678888888999999999999999999999987766443
No 135
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.57 E-value=1.5e-07 Score=76.01 Aligned_cols=95 Identities=14% Similarity=0.040 Sum_probs=79.6
Q ss_pred HHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhc
Q 005881 518 HIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEA 595 (672)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 595 (672)
.+..++..+.+.|++++|...+++. ...| +...|..+...+...|++++|+..++++++++|+++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3455667777888888888888753 3445 6778888888899999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhhCC
Q 005881 596 NMWDETAKVRKIMKEKS 612 (672)
Q Consensus 596 g~~~~a~~~~~~~~~~~ 612 (672)
|++++|.+.+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999887643
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.56 E-value=5.2e-07 Score=73.85 Aligned_cols=116 Identities=11% Similarity=0.055 Sum_probs=83.8
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005881 481 NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGC 558 (672)
Q Consensus 481 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 558 (672)
..+..+...+...|++++|...++...... +.+...+..++.++...|++++|.+.+++. ...| +...|..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 345555666666666777766666665321 224556666667777777777777766542 2233 466777888889
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCCh
Q 005881 559 KTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMW 598 (672)
Q Consensus 559 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 598 (672)
...|++++|...+++++++.|+++..+..++.++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999888875
No 137
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.54 E-value=1e-06 Score=71.31 Aligned_cols=114 Identities=17% Similarity=0.239 Sum_probs=76.4
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005881 481 NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGC 558 (672)
Q Consensus 481 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 558 (672)
..+..+...+...|++++|...++.+.+.. +.+...+..++..+.+.|++++|..++++. ...| +...|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 344555555556666666666666555321 123455556666666666666666666542 1123 566777888888
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcC
Q 005881 559 KTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEAN 596 (672)
Q Consensus 559 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 596 (672)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88999999999999999999988888888888877654
No 138
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.49 E-value=1.7e-05 Score=75.61 Aligned_cols=158 Identities=6% Similarity=-0.095 Sum_probs=117.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCC---ch------hHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 005881 420 LVDMYAKCGRLNDARKVFDHLSSKN---LV------SWNTMLVGYAQHGLGREALEIYSMMQENKIK-PN----DNTFIG 485 (672)
Q Consensus 420 l~~~~~~~g~~~~A~~~~~~~~~~~---~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ 485 (672)
.+..+...|++++|.+.++...+.. .. .+..+...+...|++++|+..|++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3567788899999999998865311 11 2334666677778999999999999984322 22 126888
Q ss_pred HHHHhhccCcHHHHHHHHHHhHHhhC----CCC-chHHHHHHHHHhhccCChHHHHHHHHhC-------CCCCC-HHHHH
Q 005881 486 VLSACVHIGLVEEGWHYFNSMIRDHG----ISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-------PIEPN-KVVWR 552 (672)
Q Consensus 486 ll~~~~~~g~~~~a~~~~~~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~ 552 (672)
+...|...|++++|..+|+.+.+... ..+ ...++..++.+|.+.|++++|.+++++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999998874321 122 2357889999999999999999988642 22233 56788
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHhcC
Q 005881 553 CLLSGCKTHK-DLVLGRYAAEKILST 577 (672)
Q Consensus 553 ~l~~~~~~~g-~~~~a~~~~~~~~~~ 577 (672)
.+...+...| ++++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8888899999 469999999998764
No 139
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.49 E-value=1.9e-06 Score=76.97 Aligned_cols=61 Identities=16% Similarity=0.022 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC--C----CchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 550 VWRCLLSGCKTHKDLVLGRYAAEKILSTDPE--D----TSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 550 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
.+..+...+...|++++|...+++++++.+. + ...+..++.+|...|++++|.+.+++..+
T Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 109 NAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3455555666667777777777776654321 1 12346777778888888888777776653
No 140
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.48 E-value=5.9e-07 Score=77.26 Aligned_cols=106 Identities=13% Similarity=0.111 Sum_probs=74.7
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 005881 481 NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSG 557 (672)
Q Consensus 481 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 557 (672)
..+..+...+...|++++|+..|++..+. .| +...+..+..+|.+.|++++|++.+++. .+.| +...|..+...
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45667777777888888888888877633 34 5667777777777777777777777652 3344 45667777777
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCchHHHHH
Q 005881 558 CKTHKDLVLGRYAAEKILSTDPEDTSAHIMLS 589 (672)
Q Consensus 558 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 589 (672)
+...|++++|+..++++++++|+++..+...+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 77777777777777777777777777554433
No 141
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.48 E-value=5.9e-08 Score=86.67 Aligned_cols=169 Identities=8% Similarity=-0.054 Sum_probs=96.8
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHH
Q 005881 421 VDMYAKCGRLNDARKVFDHLSS---KNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVE 497 (672)
Q Consensus 421 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 497 (672)
+......|.++.+.+.++.-.. .....+..+...+...|++++|++.|++.... .|+...+... ...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~ 80 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILL 80 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHH
Confidence 3334445666666665554331 12335556666667777777777777777663 2221100000 000
Q ss_pred HHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005881 498 EGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKIL 575 (672)
Q Consensus 498 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 575 (672)
.-. .. .....+..+..+|.+.|++++|++.+++. ...| +...+..+..++...|++++|...+++++
T Consensus 81 ~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 81 DKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 000 00 01245666777777777887777777652 2334 56678888888999999999999999999
Q ss_pred cCCCCCCchHHHHHHHHHhcCChHHHH-HHHHHHhh
Q 005881 576 STDPEDTSAHIMLSNVYAEANMWDETA-KVRKIMKE 610 (672)
Q Consensus 576 ~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~ 610 (672)
+++|+++.++..++.++...|+.+++. ..+..+..
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999988888777 45555543
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.47 E-value=1.3e-06 Score=76.25 Aligned_cols=128 Identities=7% Similarity=0.037 Sum_probs=95.9
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHH-hhccCCh--
Q 005881 456 AQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHL-FACRGQT-- 532 (672)
Q Consensus 456 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~-- 532 (672)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34577888888888887742 3345678888888888899999999988887432 2256777788888 7788888
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHH
Q 005881 533 RRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHI 586 (672)
Q Consensus 533 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 586 (672)
++|.+.+++. ...| +...|..+...+...|++++|...+++++++.|+++....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 9998888763 3345 5677888888899999999999999999999998866443
No 143
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.47 E-value=9.9e-07 Score=73.07 Aligned_cols=97 Identities=11% Similarity=0.037 Sum_probs=78.2
Q ss_pred chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 005881 515 RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVY 592 (672)
Q Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 592 (672)
+...+..++..+...|++++|...+++. ...| +...|..+...+...|+++.|...++++++++|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4566667777777777777777777642 2334 4667888888888999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHhhC
Q 005881 593 AEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 593 ~~~g~~~~a~~~~~~~~~~ 611 (672)
...|++++|.+.+++..+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999999999988753
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.46 E-value=3e-07 Score=84.70 Aligned_cols=135 Identities=10% Similarity=-0.103 Sum_probs=98.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCc--hHHHHHHHHHh
Q 005881 449 NTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPR--MDHIASVVHLF 526 (672)
Q Consensus 449 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~ 526 (672)
-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+.... .. .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHHH
Confidence 34566777888999998888887764 46555555556678888999999999875541 11 121 34677888899
Q ss_pred hccCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHH
Q 005881 527 ACRGQTRRAYEFIKSSP---IEPN--KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIML 588 (672)
Q Consensus 527 ~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 588 (672)
.+.|++++|++.+++.. ..|. ...+.....++.+.|+.++|...|++++..+|+ +.+...|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 99999999999998642 2243 335666777788999999999999999999996 5555554
No 145
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.46 E-value=5.6e-07 Score=73.36 Aligned_cols=93 Identities=11% Similarity=-0.007 Sum_probs=74.8
Q ss_pred HHHHHHHHhhccCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc-------hHHHH
Q 005881 518 HIASVVHLFACRGQTRRAYEFIKS-SPIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTS-------AHIML 588 (672)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l 588 (672)
.+..++..+.+.|++++|++.|++ +.+.| +...|..+..++...|++++|+..++++++++|++.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 455567777777777777777765 33455 5667888888899999999999999999999887654 57788
Q ss_pred HHHHHhcCChHHHHHHHHHHhh
Q 005881 589 SNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 589 ~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
+.+|...|++++|.+.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 8999999999999999998764
No 146
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.45 E-value=1e-06 Score=69.74 Aligned_cols=98 Identities=6% Similarity=-0.026 Sum_probs=79.1
Q ss_pred hHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC--CCchHHHHHHH
Q 005881 516 MDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPE--DTSAHIMLSNV 591 (672)
Q Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 591 (672)
...+..++..+...|++++|...+++. ...| +...|..+...+...|++++|...++++++..|+ +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 455666777777777787777777652 2233 5667888888889999999999999999999998 88999999999
Q ss_pred HHhc-CChHHHHHHHHHHhhCCC
Q 005881 592 YAEA-NMWDETAKVRKIMKEKSL 613 (672)
Q Consensus 592 ~~~~-g~~~~a~~~~~~~~~~~~ 613 (672)
|... |++++|.+.++...+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999998876544
No 147
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.43 E-value=5.7e-07 Score=75.12 Aligned_cols=107 Identities=6% Similarity=-0.093 Sum_probs=76.7
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005881 482 TFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGC 558 (672)
Q Consensus 482 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 558 (672)
.+..+...+...|++++|...|+.+... .| +...|..+..+|.+.|++++|.+.+++. ...| ++..|..+...+
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4555566667777777777777776632 34 5566777777777777777777777652 2334 455677788888
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 005881 559 KTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNV 591 (672)
Q Consensus 559 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 591 (672)
...|++++|...+++++++.|+++........+
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 999999999999999999999887766554443
No 148
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.43 E-value=8.8e-06 Score=77.60 Aligned_cols=160 Identities=6% Similarity=-0.108 Sum_probs=114.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC--C-Cc------hhHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--HHHH
Q 005881 418 SALVDMYAKCGRLNDARKVFDHLSS--K-NL------VSWNTMLVGYAQHGLGREALEIYSMMQENKI---KPN--DNTF 483 (672)
Q Consensus 418 ~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~~ 483 (672)
...+..+...|++++|.+.+....+ + .. ..+..+...+...|++++|++.+++..+... .+. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 4456677788999999888875441 1 11 1234455667788899999999998876321 222 2478
Q ss_pred HHHHHHhhccCcHHHHHHHHHHhHHhhCCCCc-----hHHHHHHHHHhhccCChHHHHHHHHhC-------CCCC-CHHH
Q 005881 484 IGVLSACVHIGLVEEGWHYFNSMIRDHGISPR-----MDHIASVVHLFACRGQTRRAYEFIKSS-------PIEP-NKVV 550 (672)
Q Consensus 484 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~ 550 (672)
..+...|...|++++|...|+++.+.....|+ ...+..++.+|...|++++|.+++++. +..+ -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 88888999999999999999888733222222 257888999999999999999998752 1111 1557
Q ss_pred HHHHHHHHHhcCCHHHH-HHHHHHHhcC
Q 005881 551 WRCLLSGCKTHKDLVLG-RYAAEKILST 577 (672)
Q Consensus 551 ~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 577 (672)
|..+...+...|++++| ...+++++.+
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 78888889999999999 7888888754
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.42 E-value=8.1e-07 Score=72.38 Aligned_cols=109 Identities=7% Similarity=-0.061 Sum_probs=70.8
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005881 482 TFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGC 558 (672)
Q Consensus 482 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 558 (672)
.+..+...+...|++++|+..|+...+. .| +...+..++.+|.+.|++++|++.+++. ...| +...|..+...+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3444555555666666666666655522 23 3455666666666666666666666542 2334 456777778888
Q ss_pred HhcCCHHHHHHHHHHHhcCC------CCCCchHHHHHHHHH
Q 005881 559 KTHKDLVLGRYAAEKILSTD------PEDTSAHIMLSNVYA 593 (672)
Q Consensus 559 ~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 593 (672)
...|++++|...++++++++ |++......+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 88889999999999998888 777776666665543
No 150
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.41 E-value=2.1e-06 Score=70.47 Aligned_cols=97 Identities=7% Similarity=0.019 Sum_probs=87.4
Q ss_pred chHHHHHHHHHhhccCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 005881 515 RMDHIASVVHLFACRGQTRRAYEFIKS-SPIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVY 592 (672)
Q Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 592 (672)
+...+..++..+.+.|++++|.+.+++ +...| +...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 457788899999999999999999986 34455 6778888888999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHhhC
Q 005881 593 AEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 593 ~~~g~~~~a~~~~~~~~~~ 611 (672)
...|++++|.+.+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999988753
No 151
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.40 E-value=1.2e-06 Score=75.18 Aligned_cols=95 Identities=15% Similarity=0.091 Sum_probs=53.6
Q ss_pred hHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 005881 516 MDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYA 593 (672)
Q Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 593 (672)
...+..+...+.+.|++++|++.|++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344555555555666666666655542 2233 44455555555556666666666666666666665666666666666
Q ss_pred hcCChHHHHHHHHHHhh
Q 005881 594 EANMWDETAKVRKIMKE 610 (672)
Q Consensus 594 ~~g~~~~a~~~~~~~~~ 610 (672)
..|++++|.+.+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 66666666665555543
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.40 E-value=4e-06 Score=66.97 Aligned_cols=107 Identities=12% Similarity=0.139 Sum_probs=60.1
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005881 483 FIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCK 559 (672)
Q Consensus 483 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 559 (672)
+..+...+...|++++|...|+..... .| +...+..++.++...|++++|.+.+++. ...| +...|..+...+.
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 334444444555555555555544421 22 3444444555555555555555554431 1223 4556666667777
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 005881 560 THKDLVLGRYAAEKILSTDPEDTSAHIMLSNVY 592 (672)
Q Consensus 560 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 592 (672)
..|++++|...++++++.+|+++..+..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 777777777777777777777776666665543
No 153
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=2.8e-06 Score=71.25 Aligned_cols=108 Identities=7% Similarity=-0.027 Sum_probs=57.5
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCc----hHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005881 483 FIGVLSACVHIGLVEEGWHYFNSMIRDHGISPR----MDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLS 556 (672)
Q Consensus 483 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 556 (672)
+..+...+...|++++|...|++.. ...|+ ...+..+..+|...|++++|.+.+++. ...| +...|..+..
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 3334444444444444444444433 22232 233444444444445555554444331 1223 4455666666
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 005881 557 GCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYA 593 (672)
Q Consensus 557 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 593 (672)
.+...|++++|...++++++++|++...+..+..+..
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 6777777777777777777777777666666655543
No 154
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.39 E-value=1.1e-06 Score=72.91 Aligned_cols=62 Identities=11% Similarity=-0.028 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcC-------CCCCCchH----HHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 549 VVWRCLLSGCKTHKDLVLGRYAAEKILST-------DPEDTSAH----IMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 549 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
..|..+..++...|++++|+..+++++++ +|+++.+| ..++.++...|++++|.+.|++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 37888888888889999999999998888 99999999 9999999999999999999998875
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=3.2e-06 Score=70.90 Aligned_cols=96 Identities=13% Similarity=0.028 Sum_probs=87.2
Q ss_pred chHHHHHHHHHhhccCChHHHHHHHHh-CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHH
Q 005881 515 RMDHIASVVHLFACRGQTRRAYEFIKS-SPIEPN----KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLS 589 (672)
Q Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 589 (672)
+...+..++..+...|++++|.+.+++ +...|+ ...|..+...+...|++++|...+++++++.|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 567888899999999999999999986 456677 567888888899999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHhh
Q 005881 590 NVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 590 ~~~~~~g~~~~a~~~~~~~~~ 610 (672)
.+|...|++++|.+.+++..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999998875
No 156
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.35 E-value=2.2e-06 Score=73.40 Aligned_cols=63 Identities=13% Similarity=0.084 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 548 KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
...|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 346777777888889999999999999999999999999999999999999999999988765
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.35 E-value=3.8e-06 Score=67.07 Aligned_cols=97 Identities=10% Similarity=0.092 Sum_probs=85.8
Q ss_pred chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 005881 515 RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVY 592 (672)
Q Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 592 (672)
....+..++..+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3466778889999999999999999863 2344 6778888888899999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHhhC
Q 005881 593 AEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 593 ~~~g~~~~a~~~~~~~~~~ 611 (672)
...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999988753
No 158
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.33 E-value=1.2e-05 Score=71.73 Aligned_cols=152 Identities=12% Similarity=-0.047 Sum_probs=75.6
Q ss_pred cCCHHHHHH---HHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHhhccCcHHH
Q 005881 427 CGRLNDARK---VFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQE----NKIKPN-DNTFIGVLSACVHIGLVEE 498 (672)
Q Consensus 427 ~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~g~~~~ 498 (672)
.|++++|.+ .+..-.......+..+...+...|++++|...+++..+ .+..|. ..++..+...+...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 345555555 33222222233455555555555666666555555543 111111 1245555555666666666
Q ss_pred HHHHHHHhHHh---hCCCC--chHHHHHHHHHhhccCChHHHHHHHHhC----C--CCCC--HHHHHHHHHHHHhcCCHH
Q 005881 499 GWHYFNSMIRD---HGISP--RMDHIASVVHLFACRGQTRRAYEFIKSS----P--IEPN--KVVWRCLLSGCKTHKDLV 565 (672)
Q Consensus 499 a~~~~~~~~~~---~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~--~~p~--~~~~~~l~~~~~~~g~~~ 565 (672)
|...+++.... .+-.| ....+..+...+...|++++|.+.+++. . ..|. ..++..+...+...|+++
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 164 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL 164 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH
Confidence 66666555432 11111 1244555666666666666666665431 0 0111 123455556677777777
Q ss_pred HHHHHHHHHhcCC
Q 005881 566 LGRYAAEKILSTD 578 (672)
Q Consensus 566 ~a~~~~~~~~~~~ 578 (672)
+|...+++++++.
T Consensus 165 ~A~~~~~~al~~~ 177 (203)
T 3gw4_A 165 EAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776543
No 159
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.32 E-value=4.5e-06 Score=85.07 Aligned_cols=143 Identities=13% Similarity=0.058 Sum_probs=95.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHH
Q 005881 446 VSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHL 525 (672)
Q Consensus 446 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 525 (672)
..|..+...|.+.|++++|+..|++.++. .|+...+ . .+...+ ... .....|..+..+
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~~--------~~~~~~~nla~~ 326 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SES--------FLLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HHH--------HHHHHHHHHHHH
Confidence 35666666677777777777777766652 2221100 0 000000 000 013567777888
Q ss_pred hhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHH
Q 005881 526 FACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAK 603 (672)
Q Consensus 526 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 603 (672)
|.+.|++++|++.+++. .+.| +...|..+..++...|++++|+..|+++++++|++..++..++.++.+.|+++++.+
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887652 3344 567888889999999999999999999999999999999999999999999998875
Q ss_pred -HHHHHhh
Q 005881 604 -VRKIMKE 610 (672)
Q Consensus 604 -~~~~~~~ 610 (672)
.++.|..
T Consensus 407 ~~~~~~f~ 414 (457)
T 1kt0_A 407 RIYANMFK 414 (457)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHh
Confidence 4555543
No 160
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.31 E-value=1.1e-06 Score=89.91 Aligned_cols=117 Identities=7% Similarity=0.024 Sum_probs=89.7
Q ss_pred HHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 005881 488 SACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDL 564 (672)
Q Consensus 488 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 564 (672)
..+.+.|++++|.+.|++..+. .| +...+..++.+|.+.|++++|.+.+++. ...| +...|..+..++...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3456677788888877777633 44 4677777888888888888888877652 3445 566888888899999999
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHH--HHhcCChHHHHHHHHH
Q 005881 565 VLGRYAAEKILSTDPEDTSAHIMLSNV--YAEANMWDETAKVRKI 607 (672)
Q Consensus 565 ~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 607 (672)
++|+..++++++++|+++..+..++.+ +.+.|++++|.+.+++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999888 8899999999999884
No 161
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.30 E-value=4.7e-06 Score=67.32 Aligned_cols=96 Identities=20% Similarity=0.253 Sum_probs=85.5
Q ss_pred hHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 005881 516 MDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYA 593 (672)
Q Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 593 (672)
...+..++..+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888999999999999999999764 2234 67788888999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHhhC
Q 005881 594 EANMWDETAKVRKIMKEK 611 (672)
Q Consensus 594 ~~g~~~~a~~~~~~~~~~ 611 (672)
..|++++|.+.++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999988753
No 162
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.29 E-value=5.6e-06 Score=84.72 Aligned_cols=82 Identities=12% Similarity=0.151 Sum_probs=37.7
Q ss_pred HHhcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHH
Q 005881 424 YAKCGRLNDARKVFDHLS---SKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPN-DNTFIGVLSACVHIGLVEEG 499 (672)
Q Consensus 424 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a 499 (672)
+.+.|++++|.+.|++.. ..+...|..+..+|.+.|++++|++.+++..+. .|+ ...+..+..++...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 344455555555554443 122334444445555555555555555554442 222 23444444444445555555
Q ss_pred HHHHHHhH
Q 005881 500 WHYFNSMI 507 (672)
Q Consensus 500 ~~~~~~~~ 507 (672)
.+.|++..
T Consensus 94 ~~~~~~al 101 (477)
T 1wao_1 94 LRDYETVV 101 (477)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544444
No 163
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.29 E-value=1.2e-05 Score=65.53 Aligned_cols=96 Identities=14% Similarity=0.066 Sum_probs=85.6
Q ss_pred chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 005881 515 RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVY 592 (672)
Q Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 592 (672)
+...+..++..+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567888899999999999999999863 2334 6778888888999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHhh
Q 005881 593 AEANMWDETAKVRKIMKE 610 (672)
Q Consensus 593 ~~~g~~~~a~~~~~~~~~ 610 (672)
...|++++|.+.+++..+
T Consensus 91 ~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 999999999999998875
No 164
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.29 E-value=4.1e-05 Score=73.04 Aligned_cols=178 Identities=16% Similarity=0.095 Sum_probs=101.6
Q ss_pred CHHHHHHHHhhCCC---CCchhHHHHHHHHHhc-C-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHH------
Q 005881 429 RLNDARKVFDHLSS---KNLVSWNTMLVGYAQH-G-LGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVE------ 497 (672)
Q Consensus 429 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~------ 497 (672)
.++++.++++.+.. .+..+|+.-...+... + ++++++++++++.+.. +-|...|..-...+.+.|.++
T Consensus 104 ~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 104 SLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhh
Confidence 36666666665542 3334555555555444 5 6666777777666532 223344444444443434333
Q ss_pred --HHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCC-------hHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCH-
Q 005881 498 --EGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQ-------TRRAYEFIKS-SPIEP-NKVVWRCLLSGCKTHKDL- 564 (672)
Q Consensus 498 --~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~-------~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~- 564 (672)
++++.++++.+. .| +...|+....++.+.++ ++++++++++ +...| |...|+-+...+.+.|..
T Consensus 183 ~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~ 259 (349)
T 3q7a_A 183 WGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPL 259 (349)
T ss_dssp HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCc
Confidence 667777666632 33 55666666666666655 5666666654 33345 556676666655555443
Q ss_pred -------------------HHHHHHHHHHhcCC------CCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 565 -------------------VLGRYAAEKILSTD------PEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 565 -------------------~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
.........++... +..+.+...|+++|...|+.++|.++++.+.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 260 VPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22222333332222 45667788999999999999999999999864
No 165
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.29 E-value=8.9e-06 Score=69.73 Aligned_cols=126 Identities=13% Similarity=-0.029 Sum_probs=65.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHh
Q 005881 447 SWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLF 526 (672)
Q Consensus 447 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 526 (672)
.|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++...+.. +.+...+..++.++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHH
Confidence 34445555555566666666666555531 2233455555555566666666666666555321 12345555666666
Q ss_pred hccCChHHHHHHHHhC-CCCC-CHHHHHH--HHHHHHhcCCHHHHHHHHHHHh
Q 005881 527 ACRGQTRRAYEFIKSS-PIEP-NKVVWRC--LLSGCKTHKDLVLGRYAAEKIL 575 (672)
Q Consensus 527 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~ 575 (672)
...|++++|.+.+++. ...| +...+.. ....+...|++++|...+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 6666666666665542 1222 2333322 2222555666666666666554
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.26 E-value=3e-06 Score=70.11 Aligned_cols=111 Identities=8% Similarity=-0.087 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005881 479 NDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLL 555 (672)
Q Consensus 479 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 555 (672)
+...+..+...+...|++++|...|+..... .| +...+..++.++...|++++|...+++. ...| +...|..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3455666666666667777777666666532 23 4566666677777777777777766542 2234 566778888
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCC-----CCchHHHHHHHH
Q 005881 556 SGCKTHKDLVLGRYAAEKILSTDPE-----DTSAHIMLSNVY 592 (672)
Q Consensus 556 ~~~~~~g~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~ 592 (672)
..+...|++++|...+++++++.|+ +......+..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999988886 444444444443
No 167
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.26 E-value=2e-06 Score=70.04 Aligned_cols=103 Identities=10% Similarity=-0.022 Sum_probs=57.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCch-HHHHHHHH
Q 005881 447 SWNTMLVGYAQHGLGREALEIYSMMQENKIKPND-NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRM-DHIASVVH 524 (672)
Q Consensus 447 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~ 524 (672)
.+..+...+.+.|++++|++.|++.++. .|+. ..|..+..++...|++++|+..++..++. .|+. ..+..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~-- 82 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLI-- 82 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHH--
Confidence 4555555666666666666666666552 3332 34555555566666666666665555421 1110 000000
Q ss_pred HhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 005881 525 LFACRGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDP 579 (672)
Q Consensus 525 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 579 (672)
..+|..+...+...|++++|+..|+++++..|
T Consensus 83 -----------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 83 -----------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp -----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred -----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 12455566667777888888888888887777
No 168
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.23 E-value=6.3e-06 Score=80.18 Aligned_cols=65 Identities=8% Similarity=-0.078 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 005881 548 KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKS 612 (672)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 612 (672)
...|..+...+...|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+..
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 260 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 260 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 46788888999999999999999999999999999999999999999999999999999987643
No 169
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.23 E-value=2e-06 Score=83.69 Aligned_cols=147 Identities=11% Similarity=-0.038 Sum_probs=82.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHH
Q 005881 446 VSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHL 525 (672)
Q Consensus 446 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 525 (672)
..|..+...+.+.|++++|+..|++.+. +.|+... +...|+.+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 4566777778888899999999988887 3565442 233444454443321 1367888899
Q ss_pred hhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHH-HHhcCChHHHH
Q 005881 526 FACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNV-YAEANMWDETA 602 (672)
Q Consensus 526 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~a~ 602 (672)
|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|+++.++..+..+ ....+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988763 3445 667888888999999999999999999999999999999988888 44566777888
Q ss_pred HHHHHHhhCC
Q 005881 603 KVRKIMKEKS 612 (672)
Q Consensus 603 ~~~~~~~~~~ 612 (672)
+.+..|....
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 8888776543
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.22 E-value=2.8e-06 Score=68.43 Aligned_cols=95 Identities=13% Similarity=0.090 Sum_probs=56.8
Q ss_pred HHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 005881 485 GVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTH 561 (672)
Q Consensus 485 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 561 (672)
.+...+.+.|++++|+..|+...+. .| +...+..+..++...|++++|++.+++. .+.| +...|..+...+...
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3444555566666666666655532 33 4455566666666666666666666542 2344 455677777778888
Q ss_pred CCHHHHHHHHHHHhcCCCCCC
Q 005881 562 KDLVLGRYAAEKILSTDPEDT 582 (672)
Q Consensus 562 g~~~~a~~~~~~~~~~~p~~~ 582 (672)
|++++|+..++++++++|+++
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888888654
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.22 E-value=3.9e-06 Score=68.51 Aligned_cols=89 Identities=13% Similarity=0.067 Sum_probs=55.1
Q ss_pred HHHHhhccCChHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---CchHHHHHHHHH
Q 005881 522 VVHLFACRGQTRRAYEFIKSS-PIEPN-K---VVWRCLLSGCKTHKDLVLGRYAAEKILSTDPED---TSAHIMLSNVYA 593 (672)
Q Consensus 522 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 593 (672)
++..+...|++++|.+.+++. ...|+ . ..+..+...+...|++++|...++++++..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344445555555555555432 11221 1 355556666677777777777777777777766 555777777777
Q ss_pred hcCChHHHHHHHHHHhh
Q 005881 594 EANMWDETAKVRKIMKE 610 (672)
Q Consensus 594 ~~g~~~~a~~~~~~~~~ 610 (672)
..|++++|.+.++.+.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777776654
No 172
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.21 E-value=5.3e-06 Score=81.65 Aligned_cols=136 Identities=12% Similarity=0.048 Sum_probs=98.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHH
Q 005881 447 SWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHL 525 (672)
Q Consensus 447 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 525 (672)
.|..+...+.+.|++++|++.|++.++. .|+.. ..... +... ...| +...|..+..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~-------~~~~---~~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAED-------ADGA---KLQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCH-------HHHG---GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccCh-------HHHH---HHHHHHHHHHHHHHHH
Confidence 4556666666777777777777666651 11100 00000 0100 1223 45678888899
Q ss_pred hhccCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHH
Q 005881 526 FACRGQTRRAYEFIKS-SPIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAK 603 (672)
Q Consensus 526 ~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 603 (672)
|.+.|++++|++.+++ +...| +...|..+..++...|++++|+..++++++++|++...+..++.++...++.+++.+
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876 34556 567888888999999999999999999999999999999999999999988887765
Q ss_pred H
Q 005881 604 V 604 (672)
Q Consensus 604 ~ 604 (672)
.
T Consensus 363 ~ 363 (370)
T 1ihg_A 363 A 363 (370)
T ss_dssp C
T ss_pred H
Confidence 3
No 173
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.19 E-value=1.5e-06 Score=69.70 Aligned_cols=82 Identities=9% Similarity=0.051 Sum_probs=56.4
Q ss_pred cCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHH
Q 005881 529 RGQTRRAYEFIKSS-PI---EP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAK 603 (672)
Q Consensus 529 ~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 603 (672)
.|++++|++.|++. .. .| +...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45555565555542 22 23 334566677777788888888888888888888888888888888888888888888
Q ss_pred HHHHHhh
Q 005881 604 VRKIMKE 610 (672)
Q Consensus 604 ~~~~~~~ 610 (672)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877654
No 174
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.17 E-value=9.8e-06 Score=76.58 Aligned_cols=109 Identities=7% Similarity=-0.133 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHh-CCCCC-CHHHHHHHH
Q 005881 479 NDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKS-SPIEP-NKVVWRCLL 555 (672)
Q Consensus 479 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~ 555 (672)
+...+..+...+...|++++|...|+..... .| +...+..++.+|.+.|++++|.+.+++ +...| +...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4566778888889999999999999988743 45 678888899999999999999999876 45566 566788888
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHH
Q 005881 556 SGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSN 590 (672)
Q Consensus 556 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 590 (672)
.++...|++++|...++++++++|+++..+...+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~ 114 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIP 114 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHH
Confidence 88999999999999999999998876544443333
No 175
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.16 E-value=2.1e-05 Score=69.85 Aligned_cols=62 Identities=16% Similarity=0.038 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 549 VVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 549 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
..|..+...+...|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 67788888899999999999999999999999999999999999999999999999998865
No 176
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.15 E-value=3e-06 Score=70.24 Aligned_cols=73 Identities=8% Similarity=-0.028 Sum_probs=52.3
Q ss_pred HHHHHHHHhhccCChHHHHHHHHh--------CCCCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCch
Q 005881 518 HIASVVHLFACRGQTRRAYEFIKS--------SPIEPNK-VVW----RCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSA 584 (672)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~--------~~~~p~~-~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 584 (672)
.|..+..++.+.|++++|++.+++ ..+.|+. ..| .....++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 455555555555555555555432 2347854 478 888899999999999999999999999988776
Q ss_pred HHHHHH
Q 005881 585 HIMLSN 590 (672)
Q Consensus 585 ~~~l~~ 590 (672)
..-+..
T Consensus 139 ~~~~~~ 144 (159)
T 2hr2_A 139 TPGKER 144 (159)
T ss_dssp CTTHHH
T ss_pred HHHHHH
Confidence 554433
No 177
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.14 E-value=0.00064 Score=64.87 Aligned_cols=227 Identities=11% Similarity=0.036 Sum_probs=145.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChHH-HHHHHHHHcCcC-chHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhc-C-CHH
Q 005881 356 ASCHYGEAIELLKDMLFEGHCPNLYT-YSNILNISSDIP-AIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKC-G-RLN 431 (672)
Q Consensus 356 ~~~~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~ 431 (672)
+.+..++|++++++++.. .|+..| ++.--..+...+ .++++...++.+.....+ +..+|+.-...+.+. + +++
T Consensus 66 ~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCH
T ss_pred hCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChH
Confidence 344445667766666654 443332 333333333444 466677777666655432 344455444444444 5 788
Q ss_pred HHHHHHhhCCC---CCchhHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCc-----
Q 005881 432 DARKVFDHLSS---KNLVSWNTMLVGYAQHGLGR--------EALEIYSMMQENKIKPNDNTFIGVLSACVHIGL----- 495 (672)
Q Consensus 432 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~----- 495 (672)
++.++++.+.+ .|..+|+.-.-.+.+.|.++ ++++.++++++.. +-|...|+.....+.+.+.
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence 99999998885 44557766655565556565 8999999999863 3455677777777777665
Q ss_pred --HHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCCh--------------------HHHHHHHHhCC-C-------
Q 005881 496 --VEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQT--------------------RRAYEFIKSSP-I------- 544 (672)
Q Consensus 496 --~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~-~------- 544 (672)
++++++.+++++. ..| |...|..+-.++.+.|+. .+..++...+. .
T Consensus 222 ~~~~eELe~~~~aI~---~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 222 RSLQDELIYILKSIH---LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp HHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred HHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 7888998888873 356 667787777777776654 23333333321 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-cCCCCCCchHHHHH
Q 005881 545 EPNKVVWRCLLSGCKTHKDLVLGRYAAEKIL-STDPEDTSAHIMLS 589 (672)
Q Consensus 545 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~ 589 (672)
.++...+..++..|...|+.++|..+++.+. +.+|-....|...+
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 2578888899999999999999999999986 78886555554443
No 178
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.14 E-value=2.4e-05 Score=79.45 Aligned_cols=187 Identities=10% Similarity=-0.035 Sum_probs=129.0
Q ss_pred HHHhcCCHHHHHHHHhhCCC--C---Cc---------------hhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH
Q 005881 423 MYAKCGRLNDARKVFDHLSS--K---NL---------------VSWNTMLVGYAQHGLGREALEIYSMMQENK-IKPNDN 481 (672)
Q Consensus 423 ~~~~~g~~~~A~~~~~~~~~--~---~~---------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~ 481 (672)
.+.+.|++++|.+.|..+.+ + +. .++..++..|...|++++|.+.+.++...- -.++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 34556777777776665541 1 00 136678888999999999999988876521 112221
Q ss_pred ----HHHHHHHHhhccCcHHHHHHHHHHhHHh---hCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-------CCCC
Q 005881 482 ----TFIGVLSACVHIGLVEEGWHYFNSMIRD---HGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-------PIEP 546 (672)
Q Consensus 482 ----~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p 546 (672)
....+...+...|++++|..+++..... .+..+ ....+..++..|...|++++|.+++++. ..+|
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 2333444556678899999888876532 22233 3467888999999999999999998752 2233
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC---C----CchHHHHHHHHHhcCChHHHHHHHHHHh
Q 005881 547 N-KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPE---D----TSAHIMLSNVYAEANMWDETAKVRKIMK 609 (672)
Q Consensus 547 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 609 (672)
. ...+..++..|...|++++|...+++++...+. . ...+..++.++...|++++|.+.+....
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3 346777788899999999999999999865432 1 2345677888899999999998887664
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.12 E-value=1.6e-05 Score=64.77 Aligned_cols=105 Identities=8% Similarity=-0.034 Sum_probs=60.4
Q ss_pred HHhhccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc
Q 005881 488 SACVHIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEPN----KVVWRCLLSGCKTH 561 (672)
Q Consensus 488 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~ 561 (672)
..+...|++++|...|+.+.+...-.+ ....+..++.++.+.|++++|.+.+++. ...|+ ...+..+...+...
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~ 89 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGE 89 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHc
Confidence 344445555555555555543211111 0134455555555566666665555432 12232 45566677778888
Q ss_pred CCHHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 005881 562 KDLVLGRYAAEKILSTDPEDTSAHIMLSNVY 592 (672)
Q Consensus 562 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 592 (672)
|++++|...++++++..|+++........+-
T Consensus 90 g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 90 GKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp TCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 9999999999999988887766555544443
No 180
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.11 E-value=5e-05 Score=79.08 Aligned_cols=170 Identities=11% Similarity=-0.005 Sum_probs=134.0
Q ss_pred cCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 005881 427 CGRLNDARKVFDHLSS---KNLVSWNTMLVGYAQHGL----------GREALEIYSMMQENKIKPNDNTFIGVLSACVHI 493 (672)
Q Consensus 427 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 493 (672)
...-++|.+.++.+.. .+...|+.--..+...|+ ++++++.++++.+.. +-+...|..-...+.+.
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3445677888887763 344577776666666666 899999999999853 33445788777788888
Q ss_pred C--cHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc------
Q 005881 494 G--LVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRG-QTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTH------ 561 (672)
Q Consensus 494 g--~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~------ 561 (672)
| +++++++.++++.+. .| +...|+.-..++.+.| .+++++++++++ ...| |..+|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8 779999999999843 45 6778888888888888 899999998864 5566 677888877776552
Q ss_pred --------CCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHH
Q 005881 562 --------KDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDE 600 (672)
Q Consensus 562 --------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 600 (672)
+.++++.+.++++++++|++.++|..+..++.+.++.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999988655
No 181
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.11 E-value=1.7e-05 Score=62.47 Aligned_cols=98 Identities=11% Similarity=-0.006 Sum_probs=56.9
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 005881 483 FIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP---NKVVWRCLLSGC 558 (672)
Q Consensus 483 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~ 558 (672)
+..+...+...|++++|...|++..+.. +.+...+..++.++...|++++|.+.+++. ...| +...|..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 3344444555555555555555544221 113445555555555566666665555432 2223 355677777777
Q ss_pred Hhc-CCHHHHHHHHHHHhcCCCCCC
Q 005881 559 KTH-KDLVLGRYAAEKILSTDPEDT 582 (672)
Q Consensus 559 ~~~-g~~~~a~~~~~~~~~~~p~~~ 582 (672)
... |++++|.+.++++++..|.++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCCC
Confidence 788 888888888888888877654
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.10 E-value=8.4e-06 Score=69.73 Aligned_cols=78 Identities=13% Similarity=-0.000 Sum_probs=60.5
Q ss_pred hHHHHHHHHHhhccCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-chHHHHHHHH
Q 005881 516 MDHIASVVHLFACRGQTRRAYEFIKS-SPIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDT-SAHIMLSNVY 592 (672)
Q Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~ 592 (672)
...|..+..+|.+.|++++|+..+++ +.+.| +...|..+..++...|++++|...++++++++|+++ .....+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45677788888888888888888765 23445 566888888999999999999999999999999887 4454554444
Q ss_pred H
Q 005881 593 A 593 (672)
Q Consensus 593 ~ 593 (672)
.
T Consensus 143 ~ 143 (162)
T 3rkv_A 143 E 143 (162)
T ss_dssp H
T ss_pred H
Confidence 3
No 183
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.09 E-value=1e-05 Score=65.91 Aligned_cols=115 Identities=8% Similarity=-0.090 Sum_probs=63.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHh
Q 005881 447 SWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLF 526 (672)
Q Consensus 447 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 526 (672)
.|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++.+.... |+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~----------- 70 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE----------- 70 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH-----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc-----------
Confidence 34445555555555555555555555431 2233344444445555555555555555444211 00
Q ss_pred hccCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHh
Q 005881 527 ACRGQTRRAYEFIKSSPIEPN----KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAE 594 (672)
Q Consensus 527 ~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 594 (672)
..++ ...|..+...+...|+++.|...++++++..| ++.....+..++..
T Consensus 71 -----------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 71 -----------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp -----------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred -----------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 0111 44566677777788888888888888888877 56666666555443
No 184
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.09 E-value=0.00022 Score=67.79 Aligned_cols=177 Identities=11% Similarity=0.053 Sum_probs=111.2
Q ss_pred HHHHHHHHhhCC---CCCchhHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCc-HHHHHHHH
Q 005881 430 LNDARKVFDHLS---SKNLVSWNTMLVGYAQHG--LGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGL-VEEGWHYF 503 (672)
Q Consensus 430 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~ 503 (672)
++++..+++.+. ..+..+|+.-...+...| ++++++.+++++.+.. +-|...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 455666666554 345566766666666666 3678888888887743 3344556655555566666 57788877
Q ss_pred HHhHHhhCCCC-chHHHHHHHHHhhcc--------------CChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhc-----
Q 005881 504 NSMIRDHGISP-RMDHIASVVHLFACR--------------GQTRRAYEFIKS-SPIEP-NKVVWRCLLSGCKTH----- 561 (672)
Q Consensus 504 ~~~~~~~~~~p-~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~----- 561 (672)
+.+++. .| +...|+....++.+. +.++++++++++ +...| |..+|+-+-..+...
T Consensus 169 ~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHH---CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHH---CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 777743 34 556666665555443 456777777765 33445 666776555554444
Q ss_pred ------CCHHHHHHHHHHHhcCCCCCCchHHHHHHHH---HhcCChHHHHHHHHHHhh
Q 005881 562 ------KDLVLGRYAAEKILSTDPEDTSAHIMLSNVY---AEANMWDETAKVRKIMKE 610 (672)
Q Consensus 562 ------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~ 610 (672)
+.++++++.++++++++|++.-.+..++.+. ...|..++....+.++.+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 3578888899999999997744443333222 235677778888877764
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.08 E-value=1.2e-05 Score=68.36 Aligned_cols=61 Identities=18% Similarity=0.059 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC------CCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 550 VWRCLLSGCKTHKDLVLGRYAAEKILSTDPE------DTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 550 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
.+..+...+...|++++|...+++++++.+. ....+..++.+|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4555666677778888888888877765321 235677888899999999999998887654
No 186
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.08 E-value=2.1e-05 Score=79.77 Aligned_cols=124 Identities=10% Similarity=0.044 Sum_probs=89.7
Q ss_pred hhccCcHHHHHHHHHHhHHhhC--CC---C-chHHHHHHHHHhhccCChHHHHHHHHhC--------C-CCCCHH-HHHH
Q 005881 490 CVHIGLVEEGWHYFNSMIRDHG--IS---P-RMDHIASVVHLFACRGQTRRAYEFIKSS--------P-IEPNKV-VWRC 553 (672)
Q Consensus 490 ~~~~g~~~~a~~~~~~~~~~~~--~~---p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~p~~~-~~~~ 553 (672)
+...|++++|..++++..+... +- | ...+++.|+.+|...|++++|..++++. | ..|+.. +++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4456777777777766554322 11 2 1356777777777788887777776542 2 345443 6788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhc-----CCCCCCchH---HHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 005881 554 LLSGCKTHKDLVLGRYAAEKILS-----TDPEDTSAH---IMLSNVYAEANMWDETAKVRKIMKEKSL 613 (672)
Q Consensus 554 l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 613 (672)
|...|..+|++++|+..++++++ ++|+++.+- ..+..++.+.|++++|..++.+++++..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88889999999999999999975 678776554 4788889999999999999999987543
No 187
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.06 E-value=1.5e-06 Score=68.78 Aligned_cols=93 Identities=9% Similarity=-0.027 Sum_probs=72.5
Q ss_pred chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC------CchHH
Q 005881 515 RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPED------TSAHI 586 (672)
Q Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 586 (672)
+...+..++..+.+.|++++|.+.+++. ...| +...|..+...+...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4456667777777888888888777652 2344 56778888888999999999999999999999988 77788
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 005881 587 MLSNVYAEANMWDETAKVRKI 607 (672)
Q Consensus 587 ~l~~~~~~~g~~~~a~~~~~~ 607 (672)
.++.++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888877766655543
No 188
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.05 E-value=1.4e-05 Score=65.18 Aligned_cols=94 Identities=12% Similarity=0.047 Sum_probs=75.9
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-------CchHHH
Q 005881 517 DHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPED-------TSAHIM 587 (672)
Q Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 587 (672)
..+..++..+...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|++ +..+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45566667777777777777777642 2223 56677788888889999999999999999988866 778999
Q ss_pred HHHHHHhcCChHHHHHHHHHHhh
Q 005881 588 LSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 588 l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
++.+|...|++++|.+.+++..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999999998875
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.04 E-value=8.3e-06 Score=79.36 Aligned_cols=151 Identities=10% Similarity=0.019 Sum_probs=77.6
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC
Q 005881 415 VIGSALVDMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIG 494 (672)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 494 (672)
..+..+...+.+.|++++|...|++....+.... .+...|+..++...+. ...|..+..++.+.|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~g 244 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKLK 244 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHcC
Confidence 4466778888899999999999998663222111 1222333344333221 136777888888899
Q ss_pred cHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCCCHH-HHHHHHHH-HHhcCCHHHHHHH
Q 005881 495 LVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEPNKV-VWRCLLSG-CKTHKDLVLGRYA 570 (672)
Q Consensus 495 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~-~~~~g~~~~a~~~ 570 (672)
++++|+..++...+. .| +...+..+..+|...|++++|.+.|++. .+.|+.. .+..+... ....+..+.+...
T Consensus 245 ~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 245 RYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp CCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888743 45 5678888899999999999999998764 4566433 44444444 3445778888999
Q ss_pred HHHHhcCCCCCCc
Q 005881 571 AEKILSTDPEDTS 583 (672)
Q Consensus 571 ~~~~~~~~p~~~~ 583 (672)
|.++++..|+++.
T Consensus 322 ~~~~l~~~p~~~~ 334 (338)
T 2if4_A 322 YKGIFKGKDEGGA 334 (338)
T ss_dssp -------------
T ss_pred HHHhhCCCCCCCC
Confidence 9999999987653
No 190
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.03 E-value=0.00044 Score=65.65 Aligned_cols=192 Identities=9% Similarity=0.000 Sum_probs=126.8
Q ss_pred hHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcC--CHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCC-hHHHHHHH
Q 005881 395 IEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCG--RLNDARKVFDHLS---SKNLVSWNTMLVGYAQHGL-GREALEIY 468 (672)
Q Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~~ 468 (672)
++.+..+++.+.....+ +..+|+.-.-.+.+.| .++++..+++.+. ..|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 34555556655554322 4445554444555556 4788888888876 4566788877777778887 58999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhcc--------------CcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhcc----
Q 005881 469 SMMQENKIKPNDNTFIGVLSACVHI--------------GLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACR---- 529 (672)
Q Consensus 469 ~~m~~~g~~p~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---- 529 (672)
+++++.. +-|...|+.....+.+. +.++++++.+..... ..| |...|+-+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCcc
Confidence 9999853 33445555544444333 567888898888873 356 567777666666555
Q ss_pred -------CChHHHHHHHHhC-CCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 005881 530 -------GQTRRAYEFIKSS-PIEPNKVVWRCLLSG-----CKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVY 592 (672)
Q Consensus 530 -------g~~~~A~~~~~~~-~~~p~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 592 (672)
+.++++++.++++ ...||. .|..+..+ ....|..++....+.++++++|...+.|..+..-+
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 4578888888764 456764 45432222 12457888999999999999998777776655443
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.03 E-value=3.3e-06 Score=67.56 Aligned_cols=93 Identities=14% Similarity=0.135 Sum_probs=55.8
Q ss_pred cCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 005881 493 IGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRY 569 (672)
Q Consensus 493 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 569 (672)
.|++++|+..|++..+...-.| +...+..++.+|...|++++|.+.+++. ...| +...+..+..++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 3555566666665552100013 2355566666666666666666666542 2234 45567777777888888888888
Q ss_pred HHHHHhcCCCCCCchH
Q 005881 570 AAEKILSTDPEDTSAH 585 (672)
Q Consensus 570 ~~~~~~~~~p~~~~~~ 585 (672)
.++++++..|+++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 8888888888776543
No 192
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.01 E-value=2.2e-05 Score=60.52 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 547 NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 547 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5678888999999999999999999999999999999999999999999999999999998765
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.99 E-value=4.1e-05 Score=75.28 Aligned_cols=111 Identities=11% Similarity=0.032 Sum_probs=83.6
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 005881 481 NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSSPIEP-NKVVWRCLLSGCK 559 (672)
Q Consensus 481 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 559 (672)
..+..+...+.+.|++++|+..|++..+.. +... .....+++. ...| +...|..+...+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 456677777888888888888887776321 1000 000111111 1233 4557888888899
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 560 THKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 560 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
+.|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998875
No 194
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.96 E-value=2.9e-05 Score=79.07 Aligned_cols=65 Identities=9% Similarity=0.003 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 005881 548 KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKS 612 (672)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 612 (672)
...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 46788888889999999999999999999999999999999999999999999999999988643
No 195
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.96 E-value=3.2e-05 Score=65.71 Aligned_cols=133 Identities=11% Similarity=-0.020 Sum_probs=77.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCc----hH
Q 005881 447 SWNTMLVGYAQHGLGREALEIYSMMQENKI-KPND----NTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPR----MD 517 (672)
Q Consensus 447 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 517 (672)
++..+...+...|++++|++.+++..+..- .++. .++..+...+...|++++|...++.......-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344555555666666666666665554210 0111 24555666666677777777776665532211111 34
Q ss_pred HHHHHHHHhhccCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 005881 518 HIASVVHLFACRGQTRRAYEFIKSS-------PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDP 579 (672)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 579 (672)
.+..++.++...|++++|.+.+++. +..+ ....+..+...+...|++++|...+++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5666677777777777777766542 1111 133556667778888999999999888876543
No 196
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.95 E-value=0.00015 Score=73.53 Aligned_cols=159 Identities=8% Similarity=-0.001 Sum_probs=120.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCc
Q 005881 452 LVGYAQHGLGREALEIYSMMQENKIKPN----------------DNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPR 515 (672)
Q Consensus 452 i~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 515 (672)
...+...|++++|++.|.++.+..-... ...+..+...|...|++++|.+.+..+....+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456778999999999999988532211 124778899999999999999999988754443333
Q ss_pred h----HHHHHHHHHhhccCChHHHHHHHHh-------CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcC------
Q 005881 516 M----DHIASVVHLFACRGQTRRAYEFIKS-------SPIEPN-KVVWRCLLSGCKTHKDLVLGRYAAEKILST------ 577 (672)
Q Consensus 516 ~----~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------ 577 (672)
. .+.+.+...+...|+.++|.++++. .+..+. ..++..+...+...|++++|...+++++..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 2344556667778999999888754 233343 446778888899999999999999998753
Q ss_pred CCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 578 DPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 578 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
.|.....+..++.+|...|++++|...+++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 222346788999999999999999999988764
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.93 E-value=2.5e-05 Score=62.11 Aligned_cols=76 Identities=12% Similarity=-0.005 Sum_probs=62.9
Q ss_pred HHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 535 AYEFIKS-SPIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 535 A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
|++.+++ +...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+.+++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444443 23345 5667888888899999999999999999999999999999999999999999999999998765
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.89 E-value=3.7e-05 Score=57.86 Aligned_cols=81 Identities=19% Similarity=0.245 Sum_probs=60.3
Q ss_pred hHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 005881 516 MDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYA 593 (672)
Q Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 593 (672)
...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345666666677777777777776542 2233 55677778888888899999999999999999988888888888887
Q ss_pred hcC
Q 005881 594 EAN 596 (672)
Q Consensus 594 ~~g 596 (672)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.86 E-value=5.6e-06 Score=68.40 Aligned_cols=96 Identities=15% Similarity=0.105 Sum_probs=66.3
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005881 492 HIGLVEEGWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYA 570 (672)
Q Consensus 492 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 570 (672)
+.+.+++|...++...+ +.| +.+.|..+..++...++++.+.+.++ .+++|+..
T Consensus 14 r~~~feeA~~~~~~Ai~---l~P~~aea~~n~G~~l~~l~~~~~g~~al~----------------------~~~eAi~~ 68 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISDAKQ----------------------MIQEAITK 68 (158)
T ss_dssp HHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHHHHH----------------------HHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHhcccchhhhhHh----------------------HHHHHHHH
Confidence 34455666666655552 233 44555555555555544433332221 36799999
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHhcC-----------ChHHHHHHHHHHhhCC
Q 005881 571 AEKILSTDPEDTSAHIMLSNVYAEAN-----------MWDETAKVRKIMKEKS 612 (672)
Q Consensus 571 ~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~ 612 (672)
|+++++++|+++.+|..++.+|...| ++++|.+.|++..+.+
T Consensus 69 le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 69 FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 99999999999999999999999875 8999999999987643
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.82 E-value=9e-05 Score=55.69 Aligned_cols=68 Identities=9% Similarity=-0.019 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 005881 546 PNKVVWRCLLSGCKTHKD---LVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKSL 613 (672)
Q Consensus 546 p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 613 (672)
+++..+..+..++...++ .++|...++++++++|+++.+...++..+.+.|++++|...|+++.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 466777777777654444 79999999999999999999999999999999999999999999987655
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.74 E-value=9.3e-05 Score=58.09 Aligned_cols=66 Identities=2% Similarity=-0.105 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 005881 546 PNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 546 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 611 (672)
++...|..+...+...|++++|...++++++++|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 355678888889999999999999999999999999999999999999999999999999998764
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.73 E-value=1.9e-05 Score=65.22 Aligned_cols=103 Identities=10% Similarity=0.165 Sum_probs=74.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCcH----------HHHHHHHHHhHHhhCCCC-chHHHHHH
Q 005881 455 YAQHGLGREALEIYSMMQENKIKP-NDNTFIGVLSACVHIGLV----------EEGWHYFNSMIRDHGISP-RMDHIASV 522 (672)
Q Consensus 455 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~----------~~a~~~~~~~~~~~~~~p-~~~~~~~l 522 (672)
..+.+.+++|++.+++..+. .| +...|..+..++...+++ ++|+..|++.+ .+.| ....|..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL---~ldP~~~~A~~~L 86 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL---LIDPKKDEAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH---HHCTTCHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH---HhCcCcHHHHHHH
Confidence 35667899999999999985 45 456788888888888765 47777777766 3455 34667777
Q ss_pred HHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 005881 523 VHLFACRGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTS 583 (672)
Q Consensus 523 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 583 (672)
..+|...|.+ .|+... ..|++++|+..|+++++++|++..
T Consensus 87 G~ay~~lg~l------------~P~~~~---------a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 87 GNAYTSFAFL------------TPDETE---------AKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHHHHH------------CCCHHH---------HHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHhccc------------Ccchhh---------hhccHHHHHHHHHHHHHhCCCCHH
Confidence 7777665543 344321 137899999999999999997743
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.68 E-value=0.00013 Score=74.02 Aligned_cols=115 Identities=8% Similarity=-0.083 Sum_probs=85.9
Q ss_pred HHhhccCChHHHHHHHHhC--------C-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhc-----CCCCCCc---hH
Q 005881 524 HLFACRGQTRRAYEFIKSS--------P-IEPNK-VVWRCLLSGCKTHKDLVLGRYAAEKILS-----TDPEDTS---AH 585 (672)
Q Consensus 524 ~~~~~~g~~~~A~~~~~~~--------~-~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~ 585 (672)
..+..+|++++|+.++++. + ..|+. .+++.|...|...|++++|+.+++++++ +.|+++. .+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3456889999999888642 2 33433 3688899999999999999999999975 4666654 57
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCccCCceeEEEeCCEEEEEEeccccCCChHHHHHHHHHHHHHHH
Q 005881 586 IMLSNVYAEANMWDETAKVRKIMKEKSLKKDTGCSWTELQNKMHYFSTSRFAQFQGIDLHEVMNQLSVHLF 656 (672)
Q Consensus 586 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 656 (672)
..|+.+|...|++++|..++++..+-. ++.-| ..||.+.++...|.+...++.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~-~~~lG-----------------~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAIL-LVTHG-----------------PSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTC-----------------TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH-HHHhC-----------------CCChHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999886521 11112 469988888777776554443
No 204
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.68 E-value=0.00042 Score=72.13 Aligned_cols=151 Identities=13% Similarity=0.087 Sum_probs=121.7
Q ss_pred hcC-ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCc----------HHHHHHHHHHhHHhhCCCC-chHHHHHHH
Q 005881 457 QHG-LGREALEIYSMMQENKIKPNDN-TFIGVLSACVHIGL----------VEEGWHYFNSMIRDHGISP-RMDHIASVV 523 (672)
Q Consensus 457 ~~g-~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 523 (672)
+.| ..++|++.++++.. +.|+.. .|+.--.++...|+ ++++++.++.+.+. .| +...|..-.
T Consensus 40 ~~~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~ 114 (567)
T 1dce_A 40 QAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRC 114 (567)
T ss_dssp HTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 344 45788999999999 567765 46655555666666 89999999999843 45 667888888
Q ss_pred HHhhccC--ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhc---
Q 005881 524 HLFACRG--QTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHK-DLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEA--- 595 (672)
Q Consensus 524 ~~~~~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--- 595 (672)
.++.+.| ++++++++++++ ...| +..+|+.-.......| ..+++.+.++++++.+|.|.++|...+.++.+.
T Consensus 115 w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 115 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccc
Confidence 8888999 779999999874 3445 7889998888888888 899999999999999999999999999998874
Q ss_pred -----------CChHHHHHHHHHHhhCC
Q 005881 596 -----------NMWDETAKVRKIMKEKS 612 (672)
Q Consensus 596 -----------g~~~~a~~~~~~~~~~~ 612 (672)
++++++.+.+++....+
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTD 222 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhC
Confidence 56789999888776543
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.67 E-value=0.0005 Score=56.48 Aligned_cols=89 Identities=10% Similarity=0.004 Sum_probs=53.0
Q ss_pred HHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHh---
Q 005881 522 VVHLFACRGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKT----HKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAE--- 594 (672)
Q Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 594 (672)
|..+|...+..++|.++|++.-...++..+..+...|.. .+|.++|...++++.+. .++.++..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 444444444444455444432212344555555555555 56777777777777665 356777777777777
Q ss_pred -cCChHHHHHHHHHHhhCC
Q 005881 595 -ANMWDETAKVRKIMKEKS 612 (672)
Q Consensus 595 -~g~~~~a~~~~~~~~~~~ 612 (672)
.+++++|.+.+++..+.|
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 677777777777766554
No 206
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.65 E-value=0.00012 Score=70.99 Aligned_cols=432 Identities=11% Similarity=0.071 Sum_probs=260.0
Q ss_pred CcchhhHHHHHHhcCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhc
Q 005881 9 NVITYNHLLLMYVKFSRINDAQKLFDEMPERNVISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSACAS 88 (672)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 88 (672)
.+.+|+.|.++..+.+++.+|++.| ++..|+..|..+|.+..++|.+++-+..+...++.. -++..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHh
Confidence 4568999999999999999998887 445577778899999999999999999998777653 344455688999999
Q ss_pred CCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhhccCC------------------------CCccc
Q 005881 89 RGDARSGKEIHGRMYRSGLELNSHVSNCLINMYGKCGLLSSAQFVFDASLE------------------------RNSIS 144 (672)
Q Consensus 89 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~------------------------~~~~~ 144 (672)
.+++.+-++++. .||..-...+-+-|...|.++.|.-+|..+.. .++.|
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 998887666543 46776667788888888999999888865432 26789
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhcCC-CcHHHHHHHHHHhh
Q 005881 145 WVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCASVLGACAVLGNLKVGMQIHSLVFKCALE-FDKFVAMGLINLYA 223 (672)
Q Consensus 145 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~ 223 (672)
|-.+-.+|...+.+.-|.-.--.+.- .| .....++..|-..|.+++...+++..+ |.+ ....+++-|.-.|+
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv---ha--deL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYs 274 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV---HA--DELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYS 274 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC---CS--SCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc---cH--HHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHH
Confidence 99999999999988877655433332 12 223346667788888888887777665 333 45678888888888
Q ss_pred cCCChhHHHHHHhcCC----C-------CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccC
Q 005881 224 KCEKLDLASRVFSNIQ----L-------PDLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPSEVTFSYVLGAFADVK 292 (672)
Q Consensus 224 ~~g~~~~a~~~~~~~~----~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 292 (672)
+-. +++..+-++..- - .....|.-++-.|.+-..++.|... |.+. .|+...-..+.....+..
T Consensus 275 KY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h--~~~Aw~h~~Fkdii~KVa 348 (624)
T 3lvg_A 275 KFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVA 348 (624)
T ss_dssp SSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSC--HHHHCCGGGGTTTGGGCS
T ss_pred hcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhC--ChhhccHHHHHHHHHHcc
Confidence 863 444444433321 1 2345677788778877777766432 2221 011111111112222222
Q ss_pred CchhHHHHHHHHHHhCCCCchHHHHHHHHH-------------HHccCChHHHHHHHhhCCCCCcccHH-HHHHHHHhcC
Q 005881 293 ETIGGRQLHSLIIKMGFSSFTFVANTVLDF-------------YSKCELLEESLKTFDEMDEHDVVSWN-ALIAGHLASC 358 (672)
Q Consensus 293 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-------------~~~~~~~~~a~~~~~~~~~~~~~~~~-~li~~~~~~~ 358 (672)
+.+---+.....+ .-.+...+.|+.. +.+.|++.-....+..+...|...-| ++-..|....
T Consensus 349 N~EiyYKAi~FYL----~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEE 424 (624)
T 3lvg_A 349 NVELYYRAIQFYL----EFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEE 424 (624)
T ss_dssp CSHHHHHHHHHHT----TSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHH----HhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhh
Confidence 3222222222111 1112222334444 44444444444444444444443333 3334555555
Q ss_pred ChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHh
Q 005881 359 HYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFD 438 (672)
Q Consensus 359 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 438 (672)
+++. ...-+..|.+-.....|.++ .++. -...-..-...|.+.++++.+.++..
T Consensus 425 Dy~~-------------------LR~SId~ydNFD~i~LA~rL----EkHe---L~eFRrIAA~LYkkn~rw~qsi~l~K 478 (624)
T 3lvg_A 425 DYQA-------------------LRTSIDAYDNFDNISLAQRL----EKHE---LIEFRRIAAYLFKGNNRWKQSVELCK 478 (624)
T ss_dssp CCHH-------------------HHHTTSSCCCSCTTHHHHHH----HTCS---SHHHHHHHHHHHHTTCHHHHHSSCSS
T ss_pred hHHH-------------------HHHHHHHhccccHHHHHHHH----hhCc---hHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 5442 11122222222233323222 1111 01111223445777888888876654
Q ss_pred hCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHH
Q 005881 439 HLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHY 502 (672)
Q Consensus 439 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 502 (672)
+=. .|.--|...+..|+.+-|.++++-..+.| +..+|...+-.|...=+++-++++
T Consensus 479 kDk-----lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 479 KDS-----LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp TTC-----CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred hcc-----cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 322 22233445567788899999999888854 456788888888887777777665
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.53 E-value=0.00025 Score=53.08 Aligned_cols=64 Identities=22% Similarity=0.225 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 547 NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 547 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
+...|..+...+...|++++|+..++++++..|+++..+..++.+|...|++++|.+.+++..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3457778888899999999999999999999999999999999999999999999999998875
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.50 E-value=0.0015 Score=53.49 Aligned_cols=112 Identities=9% Similarity=-0.076 Sum_probs=90.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhc----cCChHH
Q 005881 459 GLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFAC----RGQTRR 534 (672)
Q Consensus 459 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 534 (672)
+++++|++.|++..+.| .|+.. +...|...+.+++|.+.|++..+. -++..+..|..+|.. .++.++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999999987 45444 667777888889999999988742 466778888888887 889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCC
Q 005881 535 AYEFIKSSPIEPNKVVWRCLLSGCKT----HKDLVLGRYAAEKILSTDP 579 (672)
Q Consensus 535 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 579 (672)
|.++|++....-++..+..|...|.. .+|.++|...++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999875333577788888888888 8999999999999988853
No 209
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.48 E-value=0.00044 Score=69.05 Aligned_cols=115 Identities=10% Similarity=0.122 Sum_probs=83.7
Q ss_pred HHhhccCChHHHHHHHHhC--------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhc-----CCCCCCc---hH
Q 005881 524 HLFACRGQTRRAYEFIKSS--------P-IEPN-KVVWRCLLSGCKTHKDLVLGRYAAEKILS-----TDPEDTS---AH 585 (672)
Q Consensus 524 ~~~~~~g~~~~A~~~~~~~--------~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~ 585 (672)
.-+.+.|++++|.+++++. + ..|+ ..+++.+...|...|++++|+.+++++++ +.|+++. .+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3345667777777776542 1 1222 23677788889999999999999998875 4566654 57
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCccCCceeEEEeCCEEEEEEeccccCCChHHHHHHHHHHHHHHH
Q 005881 586 IMLSNVYAEANMWDETAKVRKIMKEKSLKKDTGCSWTELQNKMHYFSTSRFAQFQGIDLHEVMNQLSVHLF 656 (672)
Q Consensus 586 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 656 (672)
..|+.+|...|++++|..++++..+- ..+.-| ..||...+++..|.+...+|+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i-~~~~lG-----------------~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDI-MRVTHG-----------------REHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-HHHHTC-----------------TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH-HHHhcC-----------------CCChHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999988652 111112 469999999999888877775
No 210
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.42 E-value=0.00035 Score=55.23 Aligned_cols=79 Identities=18% Similarity=0.166 Sum_probs=49.8
Q ss_pred HHHHHHHhHHhhCCCC-chHHHHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005881 499 GWHYFNSMIRDHGISP-RMDHIASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKIL 575 (672)
Q Consensus 499 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 575 (672)
|+..|+... ...| +...+..++.+|...|++++|.+.+++. ...| +...|..+...+...|++++|...+++++
T Consensus 4 a~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAML---AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHH---TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444454444 2233 3455666666666666666666666542 2233 45567777777888888888888888888
Q ss_pred cCCCC
Q 005881 576 STDPE 580 (672)
Q Consensus 576 ~~~p~ 580 (672)
++.|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 87774
No 211
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.37 E-value=1.7e-05 Score=76.59 Aligned_cols=262 Identities=12% Similarity=0.022 Sum_probs=172.0
Q ss_pred CcchHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHHHHH
Q 005881 40 NVISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSACASRGDARSGKEIHGRMYRSGLELNSHVSNCLIN 119 (672)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 119 (672)
.+..|+.|..+....+++.+|++-|-+. -|+..|..++.++.+.|.+++-...+...++.. .++.+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 4567999999999999999998766432 467788999999999999999999887666653 35566789999
Q ss_pred HHHhcCChHHHHHHhhccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHH
Q 005881 120 MYGKCGLLSSAQFVFDASLERNSISWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCASVLGACAVLGNLKVGMQI 199 (672)
Q Consensus 120 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 199 (672)
+|++.+++.+..+++. .+|+.-...+..-|...|.++.|.-+|..+..-
T Consensus 125 ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~---------------------------- 173 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF---------------------------- 173 (624)
T ss_dssp HHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCC----------------------------
T ss_pred HHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccH----------------------------
Confidence 9999999877655443 367777777888888888888776666544321
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 005881 200 HSLVFKCALEFDKFVAMGLINLYAKCEKLDLASRVFSNIQLPDLTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPSEV 279 (672)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 279 (672)
..|...+.+.|++..|.+.-+. ..++.+|..+-.+|...+.+.-|.-.--.+.- .| .
T Consensus 174 ----------------akLAstLV~L~~yq~AVdaArK--Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---ha--d 230 (624)
T 3lvg_A 174 ----------------GRLASTLVHLGEYQAAVDGARK--ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HA--D 230 (624)
T ss_dssp ----------------TTTSSSSSSCSGGGSSTTTTTT--CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CS--S
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHh--cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cH--H
Confidence 1122223334444333322111 14677788888888888777655433322221 11 1
Q ss_pred hHHHHHHHhhccCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhhCCC-----------CCcccHH
Q 005881 280 TFSYVLGAFADVKETIGGRQLHSLIIKMGFSSFTFVANTVLDFYSKCELLEESLKTFDEMDE-----------HDVVSWN 348 (672)
Q Consensus 280 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~~ 348 (672)
....++..|...|.+++-..+++..... -.....+++-|.-.|+|- ++++.++-++..-. .....|.
T Consensus 231 eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ 308 (624)
T 3lvg_A 231 ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWA 308 (624)
T ss_dssp CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHH
Confidence 2233455577777777777777665521 135677788888888775 44444444443322 2445788
Q ss_pred HHHHHHHhcCChhHHHH
Q 005881 349 ALIAGHLASCHYGEAIE 365 (672)
Q Consensus 349 ~li~~~~~~~~~~~A~~ 365 (672)
-++-.|++..+++.|..
T Consensus 309 ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 309 ELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhcchhHHHHHH
Confidence 88888888888887653
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.36 E-value=0.00081 Score=51.31 Aligned_cols=53 Identities=21% Similarity=0.291 Sum_probs=28.3
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCc-hHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 558 CKTHKDLVLGRYAAEKILSTDPEDTS-AHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 558 ~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
+...|++++|...++++++.+|+++. .+..++.+|...|++++|.+.+++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44445555555555555555555555 555555555555555555555555443
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.34 E-value=0.00035 Score=69.57 Aligned_cols=82 Identities=12% Similarity=-0.002 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhc-----CCCCCC---chHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCCceeE
Q 005881 550 VWRCLLSGCKTHKDLVLGRYAAEKILS-----TDPEDT---SAHIMLSNVYAEANMWDETAKVRKIMKEKSLKKDTGCSW 621 (672)
Q Consensus 550 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 621 (672)
+++.+..+|...|++++|+.+++++++ +.|+++ ..+..|+.+|..+|++++|..++++..+-.. +.-|
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~-~~lG--- 417 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME-VAHG--- 417 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTC---
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH-HHcC---
Confidence 677788888888888888888888875 456655 4577999999999999999999998865211 1111
Q ss_pred EEeCCEEEEEEeccccCCChHHHHHHHH
Q 005881 622 TELQNKMHYFSTSRFAQFQGIDLHEVMN 649 (672)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 649 (672)
..||.+.+++..|+
T Consensus 418 --------------~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 418 --------------KDHPYISEIKQEIE 431 (433)
T ss_dssp --------------TTCHHHHHHHHHHH
T ss_pred --------------CCChHHHHHHHHHh
Confidence 46888887766554
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.23 E-value=0.0068 Score=57.77 Aligned_cols=143 Identities=10% Similarity=0.010 Sum_probs=73.7
Q ss_pred CCCchhHHHHHHHHH--hcC---ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCc
Q 005881 442 SKNLVSWNTMLVGYA--QHG---LGREALEIYSMMQENKIKPNDN-TFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPR 515 (672)
Q Consensus 442 ~~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 515 (672)
..+...|...+.+.. ..+ +..+|..+|++.++ +.|+.. .+..+..++.- . ...+ ..+
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~----------~----~~~~-~~~ 253 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIV----------R----HSQH-PLD 253 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH----------H----HHHS-CCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH----------H----hccC-CCc
Confidence 446667777666543 333 34789999999998 577753 44444433330 0 0001 001
Q ss_pred hHHHHHHHHHhhccCChHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHh
Q 005881 516 MDHIASVVHLFACRGQTRRAYEFIKSSPIE-PNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAE 594 (672)
Q Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 594 (672)
...... ..++.+....+... .++.++..+...+...|++++|...++++++++| +...|..++.++.-
T Consensus 254 ~~~~~~----------l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~ 322 (372)
T 3ly7_A 254 EKQLAA----------LNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEM 322 (372)
T ss_dssp HHHHHH----------HHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred hhhHHH----------HHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 110000 01222222222222 2444555555555555666666666666666665 34555666666666
Q ss_pred cCChHHHHHHHHHHhhCC
Q 005881 595 ANMWDETAKVRKIMKEKS 612 (672)
Q Consensus 595 ~g~~~~a~~~~~~~~~~~ 612 (672)
.|++++|.+.+++....+
T Consensus 323 ~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 323 KGMNREAADAYLTAFNLR 340 (372)
T ss_dssp TTCHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 666666666666655443
No 215
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.14 E-value=0.0015 Score=49.99 Aligned_cols=63 Identities=11% Similarity=0.188 Sum_probs=42.4
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 005881 444 NLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPN-DNTFIGVLSACVHIGLVEEGWHYFNSMIR 508 (672)
Q Consensus 444 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 508 (672)
+...|..+...|...|++++|++.|++.++. .|+ ...|..+..++...|++++|...|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3456666777777777777777777777764 333 34666677777777777777777776653
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.12 E-value=0.0022 Score=61.04 Aligned_cols=111 Identities=8% Similarity=-0.085 Sum_probs=65.6
Q ss_pred CCCHHHHHHHHHHhh--cc---CcHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHhhccCChHHHHHHHHhCCCCCCHHH
Q 005881 477 KPNDNTFIGVLSACV--HI---GLVEEGWHYFNSMIRDHGISPR-MDHIASVVHLFACRGQTRRAYEFIKSSPIEPNKVV 550 (672)
Q Consensus 477 ~p~~~~~~~ll~~~~--~~---g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~ 550 (672)
+.+...|..++++.. .. ....+|..+|++.+ .+.|+ ...+..+..+|. . ....-+. +...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al---~lDP~~a~A~A~la~a~~-------~--~~~~~~~--~~~~ 256 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIV---QSSPEFTYARAEKALVDI-------V--RHSQHPL--DEKQ 256 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHH-------H--HHHHSCC--CHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHH-------H--HhccCCC--chhh
Confidence 445555666665532 22 33577888888877 34665 345554444443 0 0111111 1111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 005881 551 WRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKS 612 (672)
Q Consensus 551 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 612 (672)
... ...+... ...+..+|.++.+|..++.++...|++++|...++++...+
T Consensus 257 ~~~----------l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln 307 (372)
T 3ly7_A 257 LAA----------LNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307 (372)
T ss_dssp HHH----------HHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHH----------HHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 111 1222221 13456789999999999999988999999999999998765
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.06 E-value=0.003 Score=62.89 Aligned_cols=94 Identities=10% Similarity=0.025 Sum_probs=59.9
Q ss_pred cCcHHHHHHHHHHhHHhhC--CCCc----hHHHHHHHHHhhccCChHHHHHHHHhC--------C-CCCCHH-HHHHHHH
Q 005881 493 IGLVEEGWHYFNSMIRDHG--ISPR----MDHIASVVHLFACRGQTRRAYEFIKSS--------P-IEPNKV-VWRCLLS 556 (672)
Q Consensus 493 ~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~p~~~-~~~~l~~ 556 (672)
.|++++|..++++..+... +-|+ ..+++.|+.+|...|++++|..++++. | ..|+.. +++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 3566666666665543221 1221 255666677777777777776666542 2 345444 6788888
Q ss_pred HHHhcCCHHHHHHHHHHHhc-----CCCCCCchHH
Q 005881 557 GCKTHKDLVLGRYAAEKILS-----TDPEDTSAHI 586 (672)
Q Consensus 557 ~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 586 (672)
.|..+|++++|+..++++++ ++|+++.+-.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 89999999999999998875 5677765443
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.06 E-value=0.0024 Score=52.08 Aligned_cols=63 Identities=14% Similarity=0.028 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHHhcCC-C-CCCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 005881 547 NKVVWRCLLSGCKTHK---DLVLGRYAAEKILSTD-P-EDTSAHIMLSNVYAEANMWDETAKVRKIMK 609 (672)
Q Consensus 547 ~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 609 (672)
+..+...+..++.+.+ +.++|+.+++.+++.+ | ++...++.|+-.|.+.|++++|.+.++.+.
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL 98 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 98 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4444444444444444 3445555555555555 4 334555555555555555555555555554
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.96 E-value=0.0022 Score=48.75 Aligned_cols=79 Identities=10% Similarity=0.121 Sum_probs=54.9
Q ss_pred HHHHhhccCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCCh
Q 005881 522 VVHLFACRGQTRRAYEFIKSS-PIEP-NKV-VWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMW 598 (672)
Q Consensus 522 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 598 (672)
.+..+.+.|++++|.+.+++. ...| +.. .|..+...+...|++++|+..++++++++|+++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 345566677777777777652 2344 455 77777888888999999999999999999988876632 445
Q ss_pred HHHHHHHHHH
Q 005881 599 DETAKVRKIM 608 (672)
Q Consensus 599 ~~a~~~~~~~ 608 (672)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.91 E-value=0.0057 Score=61.02 Aligned_cols=98 Identities=6% Similarity=-0.091 Sum_probs=56.2
Q ss_pred hhccCcHHHHHHHHHHhHHhhC--CCCc----hHHHHHHHHHhhccCChHHHHHHHHhC---------CCCCCHH-HHHH
Q 005881 490 CVHIGLVEEGWHYFNSMIRDHG--ISPR----MDHIASVVHLFACRGQTRRAYEFIKSS---------PIEPNKV-VWRC 553 (672)
Q Consensus 490 ~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~~ 553 (672)
+.+.|++++|..++++...... +.|+ ..+++.++.+|...|++++|++++++. +..|+.. +++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 3344555555555554442211 1111 244555555555566666655555431 2334433 5777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhc-----CCCCCCchHHH
Q 005881 554 LLSGCKTHKDLVLGRYAAEKILS-----TDPEDTSAHIM 587 (672)
Q Consensus 554 l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~~ 587 (672)
|...|..+|++++|+..++++++ ++|+++.+-..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 88888888889989888888865 57777665443
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.86 E-value=0.003 Score=57.48 Aligned_cols=86 Identities=12% Similarity=0.068 Sum_probs=66.7
Q ss_pred HHHHHHHHh-CCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHhcCCCCC-CchHHHHHHHHHhc-CChHHH
Q 005881 533 RRAYEFIKS-SPIEPN---KVVWRCLLSGCKT-----HKDLVLGRYAAEKILSTDPED-TSAHIMLSNVYAEA-NMWDET 601 (672)
Q Consensus 533 ~~A~~~~~~-~~~~p~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~a 601 (672)
.+|...+++ +.+.|+ ...|..+...|.+ -|+.++|++.|+++++++|+. ...++.+++.|+.. |+.++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 344444443 234565 4567777777777 499999999999999999975 99999999999884 999999
Q ss_pred HHHHHHHhhCCCccCCc
Q 005881 602 AKVRKIMKEKSLKKDTG 618 (672)
Q Consensus 602 ~~~~~~~~~~~~~~~~~ 618 (672)
.+.+++.....++..|+
T Consensus 260 ~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 260 DEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 99999998866654444
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.82 E-value=0.12 Score=40.36 Aligned_cols=141 Identities=8% Similarity=-0.052 Sum_probs=93.4
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHH
Q 005881 456 AQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRA 535 (672)
Q Consensus 456 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 535 (672)
.-.|..++..++..+.... .+..-++.++--...+-+=+-..+.++.+-+-+. +..+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFD--------------is~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD--------------LDKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC--------------GGGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcC--------------cHhhhcHHHH
Confidence 3456666777777666652 2333344444333333333444444444322111 2346677777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCCCcc
Q 005881 536 YEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKSLKK 615 (672)
Q Consensus 536 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 615 (672)
...+-.++. +.......+.....+|+.++-..++..++..+|-+++....++.+|.+.|+..+|.+++.+.-++|++.
T Consensus 81 i~C~~~~n~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~kE 158 (172)
T 1wy6_A 81 VECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEKE 158 (172)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhcc--hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhHH
Confidence 766666542 334455667888899999999999999877776689999999999999999999999999999988853
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.54 E-value=0.013 Score=44.97 Aligned_cols=74 Identities=15% Similarity=0.097 Sum_probs=52.0
Q ss_pred hHHHHHHHHHhhccCChHHHHHHHHhC---------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHH
Q 005881 516 MDHIASVVHLFACRGQTRRAYEFIKSS---------PIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHI 586 (672)
Q Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 586 (672)
...+..|+..+.+.|+++.|..+++.. +-.+....+..+..++.+.|+++.|...+++++++.|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 334445555555566666665555431 01235667888889999999999999999999999999877766
Q ss_pred HHH
Q 005881 587 MLS 589 (672)
Q Consensus 587 ~l~ 589 (672)
.+.
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 554
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.39 E-value=0.023 Score=42.35 Aligned_cols=67 Identities=9% Similarity=0.037 Sum_probs=51.7
Q ss_pred CchHHHHHHHHHhhccCC---hHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 005881 514 PRMDHIASVVHLFACRGQ---TRRAYEFIKS-SPIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPE 580 (672)
Q Consensus 514 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 580 (672)
.+++.+..+..++...++ .++|..++++ +...| ++..+..+...+.+.|++++|+..++++++.+|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 466777777777755444 6888888875 34556 5557777777889999999999999999999997
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.38 E-value=0.041 Score=44.83 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHH
Q 005881 548 KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHI 586 (672)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 586 (672)
...+-.+.-++.+.|++++|++.++++++.+|+|..+..
T Consensus 71 rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 71 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 345566777889999999999999999999997755433
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.15 Score=42.70 Aligned_cols=129 Identities=16% Similarity=0.126 Sum_probs=75.0
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHH
Q 005881 422 DMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWH 501 (672)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 501 (672)
+....+|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ |..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3345678888888877665 4566788888888888888888887777544 3344444555666655554
Q ss_pred HHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005881 502 YFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKI 574 (672)
Q Consensus 502 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 574 (672)
+-+... ..| -++.-...+.-.|+++++.+++.+.+.-|. .......+|..+.|.++.+.+
T Consensus 82 la~iA~-~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~e------A~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQ-TRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPL------AYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHH-HTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHH------HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHH-HCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHH------HHHHHHHcCcHHHHHHHHHHh
Confidence 433222 111 133344455567777777777766552221 112233455666666665544
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.16 E-value=0.093 Score=57.74 Aligned_cols=102 Identities=15% Similarity=0.135 Sum_probs=59.2
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHH
Q 005881 423 MYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHY 502 (672)
Q Consensus 423 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 502 (672)
.....|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 3456788888888877653 456888888888888888888888887644 23333344445555544443
Q ss_pred HHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhC
Q 005881 503 FNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSS 542 (672)
Q Consensus 503 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (672)
-+.... .+ .++.-..+|.+.|++++|.+++.++
T Consensus 730 ~~~a~~-~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 730 AKDAET-TG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHH-cC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 332221 11 1222233444555555555555444
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.98 E-value=0.053 Score=59.76 Aligned_cols=153 Identities=12% Similarity=0.012 Sum_probs=89.5
Q ss_pred HHhcCCHHHHHH-HHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHH
Q 005881 424 YAKCGRLNDARK-VFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHY 502 (672)
Q Consensus 424 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 502 (672)
....+++++|.+ ++..+.. ......++..+.+.|.+++|+++.+. |+ .- .......|++++|.++
T Consensus 609 ~~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-~~----f~~~l~~~~~~~A~~~ 674 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPD-------QD-QK----FELALKVGQLTLARDL 674 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-HH----HHHHHHHTCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCC-------cc-hh----eehhhhcCCHHHHHHH
Confidence 345678888877 6544331 12226667777788888888776531 11 11 2234556888888887
Q ss_pred HHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 005881 503 FNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDT 582 (672)
Q Consensus 503 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 582 (672)
.+.+ .+...|..++..+.+.|+++.|.+.|.+++ | |..+...+...|+.+....+.+.+...+.
T Consensus 675 ~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~---d---~~~l~~l~~~~~~~~~~~~~~~~a~~~~~--- 738 (814)
T 3mkq_A 675 LTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAH---D---LESLFLLHSSFNNKEGLVTLAKDAETTGK--- 738 (814)
T ss_dssp HTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---C---HHHHHHHHHHTTCHHHHHHHHHHHHHTTC---
T ss_pred HHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc---C---hhhhHHHHHHcCCHHHHHHHHHHHHHcCc---
Confidence 5432 356788888888888888888888888765 1 22333444445555555554444433221
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHH
Q 005881 583 SAHIMLSNVYAEANMWDETAKVRKIM 608 (672)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~a~~~~~~~ 608 (672)
+.....+|.+.|++++|.+++..+
T Consensus 739 --~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 739 --FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp --HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred --hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 223333455555555555555544
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.85 E-value=0.059 Score=42.14 Aligned_cols=71 Identities=10% Similarity=0.003 Sum_probs=37.7
Q ss_pred CchHHHHHHHHHhhccCChHH---HHHHHHhCC-CC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCch
Q 005881 514 PRMDHIASVVHLFACRGQTRR---AYEFIKSSP-IE-P--NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSA 584 (672)
Q Consensus 514 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~-~~-p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 584 (672)
|+..+-..+..++.+..+..+ ++.+++.+- .. | .....-.+.-++.+.|+++.|++.++.+++.+|+|..+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 555665566666666665544 555555431 11 2 12233344445666666666666666666666655443
No 230
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.61 E-value=2.6 Score=43.82 Aligned_cols=240 Identities=10% Similarity=0.033 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHccCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcC
Q 005881 314 FVANTVLDFYSKCELLEESLKTFDEMDEHDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIP 393 (672)
Q Consensus 314 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 393 (672)
..-+..+..+.+.+++.....++.. ...+...-.....+....|+..+|......+-..|. ........++..+.+.|
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCC
Confidence 3445556667777888877776665 333444445566677778887777777777665542 22333444444444333
Q ss_pred chHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCC---------------------------CCCch
Q 005881 394 AIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLS---------------------------SKNLV 446 (672)
Q Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------------------------~~~~~ 446 (672)
.+... .++..+ ......|+...|..+...+. .++..
T Consensus 151 ~lt~~----------------~~~~R~-~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~ 213 (618)
T 1qsa_A 151 KQDPL----------------AYLERI-RLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDF 213 (618)
T ss_dssp CSCHH----------------HHHHHH-HHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHH
T ss_pred CCCHH----------------HHHHHH-HHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChh
Confidence 22211 111111 11122233333333322221 11111
Q ss_pred h---HHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHH
Q 005881 447 S---WNTMLVGYAQHGLGREALEIYSMMQENK-IKPNDN--TFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIA 520 (672)
Q Consensus 447 ~---~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 520 (672)
. +..-+.-+.+ .+.+.|..+|......+ +.+... ....+.......+...++...+..... ..++.....
T Consensus 214 ~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e 289 (618)
T 1qsa_A 214 TRQMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIE 289 (618)
T ss_dssp HHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHH
T ss_pred hHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHH
Confidence 1 1111222222 36677777777765432 222221 222333344444534444444444321 123333333
Q ss_pred HHHHHhhccCChHHHHHHHHhCCCCC-CHHHH-HHHHHHHHhcCCHHHHHHHHHHHhc
Q 005881 521 SVVHLFACRGQTRRAYEFIKSSPIEP-NKVVW-RCLLSGCKTHKDLVLGRYAAEKILS 576 (672)
Q Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~ 576 (672)
-.+....+.|+++.|...|+.++..+ +...| -=+..+....|+.++|..+|+++.+
T Consensus 290 ~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 290 RRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 34444456677877777777775433 21221 2233455667777777777777764
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.29 E-value=0.59 Score=37.21 Aligned_cols=91 Identities=8% Similarity=-0.037 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhcCCCC-CCchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCCcee
Q 005881 545 EPNKVVWRCLLSGCKTHK---DLVLGRYAAEKILSTDPE-DTSAHIMLSNVYAEANMWDETAKVRKIMKEKSLKKDTGCS 620 (672)
Q Consensus 545 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 620 (672)
.|+..+-..+..++.+.. +..+++.+++.++...|. .......|+-.+.+.|++++|.+..+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~---------- 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---------- 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh----------
Confidence 345555555555554443 344566666766666663 334555666667777777777777776654
Q ss_pred EEEeCCEEEEEEeccccCCChHHHHHHHHHHHHHHHhCCcc
Q 005881 621 WTELQNKMHYFSTSRFAQFQGIDLHEVMNQLSVHLFDGGYV 661 (672)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 661 (672)
..|...++.+.-.-+..++.+.|.+
T Consensus 106 ----------------~eP~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 106 ----------------HERNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp ----------------TCCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred ----------------cCCCcHHHHHHHHHHHHHHHHhchh
Confidence 2444455554445555666666665
No 232
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.02 E-value=0.11 Score=54.88 Aligned_cols=55 Identities=7% Similarity=-0.043 Sum_probs=51.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 005881 555 LSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMK 609 (672)
Q Consensus 555 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 609 (672)
...|...|+++.|+.+.++++..-|.+..+|..|+.+|...|+|+.|+-.++.++
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4557889999999999999999999999999999999999999999999999885
No 233
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.97 E-value=0.078 Score=40.49 Aligned_cols=64 Identities=17% Similarity=-0.033 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC-------CCCCchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005881 547 NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTD-------PEDTSAHIMLSNVYAEANMWDETAKVRKIMKE 610 (672)
Q Consensus 547 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 610 (672)
+..-...+...+...|++..|...++++++.. +..+..+..|+.+|.+.|++++|...+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 33445567788999999999999999998753 33456788999999999999999999998875
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.56 E-value=0.57 Score=42.80 Aligned_cols=110 Identities=11% Similarity=0.066 Sum_probs=63.2
Q ss_pred cCCHHHHHHHHhhCCCCCc--hhHHHHHHH-HHhc--CC------hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhhc
Q 005881 427 CGRLNDARKVFDHLSSKNL--VSWNTMLVG-YAQH--GL------GREALEIYSMMQENKIKPN---DNTFIGVLSACVH 492 (672)
Q Consensus 427 ~g~~~~A~~~~~~~~~~~~--~~~~~li~~-~~~~--g~------~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~ 492 (672)
.++..+-.+.+.++.+.++ ..|..++.+ +... |+ ...|...+++.++ +.|+ ...|..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 3444555555666554333 356655543 3332 32 3566666777777 5666 3456666666666
Q ss_pred c-----CcHHHHHHHHHHhHHhhCCCC--chHHHHHHHHHhhcc-CChHHHHHHHHh
Q 005881 493 I-----GLVEEGWHYFNSMIRDHGISP--RMDHIASVVHLFACR-GQTRRAYEFIKS 541 (672)
Q Consensus 493 ~-----g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~-g~~~~A~~~~~~ 541 (672)
. |+.++|.++|++.. .+.| +..++..+.+.|++. |+.++|.+.+++
T Consensus 212 vPp~~gGd~ekA~~~ferAL---~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~k 265 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLT---RYCSAHDPDHHITYADALCIPLNNRAGFDEALDR 265 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHH---HHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHH---HhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3 77777777777776 3344 255555566666553 566666665554
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.54 E-value=0.54 Score=36.75 Aligned_cols=85 Identities=9% Similarity=0.025 Sum_probs=49.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHH---HHHHHHHhHHhhCCCC--chHHHHHHHHHhhccCChH
Q 005881 459 GLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEE---GWHYFNSMIRDHGISP--RMDHIASVVHLFACRGQTR 533 (672)
Q Consensus 459 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~ 533 (672)
.....+.+-|.+....| .|+..+-..+..++.+..+..+ ++.+++.+.+. -.| ..+..-.|.-++.+.|+++
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhhHH
Confidence 33445555555555544 3566665566667776665554 67777666532 123 2344555666777777777
Q ss_pred HHHHHHHhC-CCCC
Q 005881 534 RAYEFIKSS-PIEP 546 (672)
Q Consensus 534 ~A~~~~~~~-~~~p 546 (672)
+|.++++.+ ..+|
T Consensus 92 ~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 92 KALKYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCC
Confidence 777777653 3445
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.39 E-value=0.19 Score=40.27 Aligned_cols=100 Identities=8% Similarity=0.097 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHhhccCcH------HHHHHHHHHhHHhhCCCCch-HHHHHHHHH------hhccCChHHHHHHHHhC-C-
Q 005881 479 NDNTFIGVLSACVHIGLV------EEGWHYFNSMIRDHGISPRM-DHIASVVHL------FACRGQTRRAYEFIKSS-P- 543 (672)
Q Consensus 479 ~~~~~~~ll~~~~~~g~~------~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~------~~~~g~~~~A~~~~~~~-~- 543 (672)
|..+|...+...-+.|++ ++.+++|++... .++|+. ..|...+.. +...++.++|.++|+.+ .
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 345666666666666777 777777776664 345542 111111111 12235555555555432 0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 005881 544 IEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPE 580 (672)
Q Consensus 544 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 580 (672)
-+-=...|-.....-.++|++..|.+++.+++.+.|.
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 0111444544444455556666666666666665553
No 237
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.30 E-value=11 Score=40.97 Aligned_cols=257 Identities=13% Similarity=0.013 Sum_probs=129.2
Q ss_pred HHhhcCCChhHHHHHHhcCCCC----Ccc--hHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCC---h-hhH-HHHHH
Q 005881 220 NLYAKCEKLDLASRVFSNIQLP----DLT--AWSALIGGYAQLGKACEAIDLFVKMFSSGL--MPS---E-VTF-SYVLG 286 (672)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~~~~----~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~---~-~t~-~~ll~ 286 (672)
-+....|+.+++..+++..... +.. .-..+.-+....|..+++..++.......- .-+ . ... ..+--
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 4456678888888888776531 111 112233455666766677777766554311 000 1 111 11111
Q ss_pred HhhccCC-chhHHHHHHHHHHhCCCCch--HHHHHHHHHHHccCChHHHHHHHhhCCC-CCccc--HHHHHHHHHhcCCh
Q 005881 287 AFADVKE-TIGGRQLHSLIIKMGFSSFT--FVANTVLDFYSKCELLEESLKTFDEMDE-HDVVS--WNALIAGHLASCHY 360 (672)
Q Consensus 287 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~--~~~li~~~~~~~~~ 360 (672)
+.+..|. -+++...+..++...- +.. ...-+|...+.-.|+.+....++..+.+ .+... .-.+.-++...|+.
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 2222332 2344444444443221 111 1112233344556666666666655432 12222 22233355577888
Q ss_pred hHHHHHHHHHHhCCCCCChHHHHH---HHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHH
Q 005881 361 GEAIELLKDMLFEGHCPNLYTYSN---ILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVF 437 (672)
Q Consensus 361 ~~A~~~~~~m~~~g~~p~~~t~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 437 (672)
+.+..+++.+... .....-|.. +.-+|+..|+.....+++..+.... ..++.-...+.-++...|+.+.+.+++
T Consensus 541 e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 541 ELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 8888888877653 222223332 2346778888888777888777542 122222223333444567777777777
Q ss_pred hhCC-CCCchhH--HHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHH
Q 005881 438 DHLS-SKNLVSW--NTMLVGYAQHGLG-REALEIYSMMQENKIKPNDNTF 483 (672)
Q Consensus 438 ~~~~-~~~~~~~--~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~ 483 (672)
+.+. ..|+..- -.+.-+....|.. .+|++++..+.. .+|...-
T Consensus 618 ~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vr 664 (963)
T 4ady_A 618 QLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVR 664 (963)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHH
Confidence 7554 3344332 2233344444444 578888888865 4555443
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.13 E-value=1.1 Score=35.96 Aligned_cols=97 Identities=13% Similarity=0.239 Sum_probs=71.5
Q ss_pred CCCchhHHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCCCHH----HHHHHHH---HhhccCcHHHHHHHHHHhHH
Q 005881 442 SKNLVSWNTMLVGYAQHGLG------REALEIYSMMQENKIKPNDN----TFIGVLS---ACVHIGLVEEGWHYFNSMIR 508 (672)
Q Consensus 442 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~----~~~~ll~---~~~~~g~~~~a~~~~~~~~~ 508 (672)
..|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|..+.- .+...+++++|.++|+.+..
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 56777888888888888999 8889999998885 677642 1211111 12334899999999999975
Q ss_pred hhCCCCchHHHHHHHHHhhccCChHHHHHHHHh
Q 005881 509 DHGISPRMDHIASVVHLFACRGQTRRAYEFIKS 541 (672)
Q Consensus 509 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (672)
. +-.- ...|......-.|+|++..|.+++.+
T Consensus 89 ~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~ 119 (161)
T 4h7y_A 89 N-CKKF-AFVHISFAQFELSQGNVKKSKQLLQK 119 (161)
T ss_dssp H-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred H-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 4 2222 67777778888899999999999965
No 239
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.71 E-value=0.69 Score=36.30 Aligned_cols=44 Identities=9% Similarity=0.022 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCCC-CCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 005881 566 LGRYAAEKILSTDPE-DTSAHIMLSNVYAEANMWDETAKVRKIMK 609 (672)
Q Consensus 566 ~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 609 (672)
.++.+++.+++.+|. ....+..|+-.+.+.|++++|.+..+.+.
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444442 23333444444444455555544444443
No 240
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.41 E-value=4.3 Score=33.94 Aligned_cols=128 Identities=13% Similarity=0.116 Sum_probs=83.9
Q ss_pred HcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 005881 389 SSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIY 468 (672)
Q Consensus 389 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 468 (672)
....|+++.|.++.+.+ .+...|..|.+...+.|+++-|++.|..... +..+.-.|.-.|+.++-.++-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHH
Confidence 33566777776665554 2566788999999999999999999988764 445555666778887777666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCChHHHHHHHHhCC
Q 005881 469 SMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQTRRAYEFIKSSP 543 (672)
Q Consensus 469 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (672)
+.....|- ++.....+...|+++++.++|.+. +.-|... ......|..+.|.++.++++
T Consensus 84 ~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~----~r~~eA~------~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 84 NIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG----GSLPLAY------AVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT----TCHHHHH------HHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC----CChHHHH------HHHHHcCcHHHHHHHHHHhC
Confidence 66665541 344444566679999999988644 2222211 11122556677777777664
No 241
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=91.46 E-value=9.2 Score=35.81 Aligned_cols=133 Identities=8% Similarity=-0.026 Sum_probs=79.5
Q ss_pred hhhHHHHHHhcCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCchhHHHHH----HHhHhCCCCCCcccHHHHHHHHh
Q 005881 12 TYNHLLLMYVKFSRINDAQKLFDEMPERNVISWSALISGFSQIGMPEVALNYF----RLMVCCVLEPNYYTYVGAVSACA 87 (672)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~~~~p~~~~~~~ll~~~~ 87 (672)
+|-++..-|.+++++++|++++.. -...+.+.|....|-++- +-+.+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455666667777777777776422 233455566666555444 44456678888877777777776
Q ss_pred cCCCh-----hhHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCChHHHHHHhhccCCCCcccHHHHHHHHHhc
Q 005881 88 SRGDA-----RSGKEIHGRMYRSG--LELNSHVSNCLINMYGKCGLLSSAQFVFDASLERNSISWVSLLSSYCQC 155 (672)
Q Consensus 88 ~~~~~-----~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 155 (672)
....- .-..+...+-.+.| ...|+.....+-..|.+.+++.+|+..|--...+++..+..++..+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHT
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Confidence 55431 12223333444444 3457888888888888888888888887432222234554444444433
No 242
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.80 E-value=13 Score=34.64 Aligned_cols=168 Identities=9% Similarity=0.047 Sum_probs=99.7
Q ss_pred HHHHHHHHHccCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHH----HHHHHhCCCCCChHHHHHHHHHHcC
Q 005881 316 ANTVLDFYSKCELLEESLKTFDEMDEHDVVSWNALIAGHLASCHYGEAIEL----LKDMLFEGHCPNLYTYSNILNISSD 391 (672)
Q Consensus 316 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~~ 391 (672)
|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ ++-..+.+++++..+...++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 34666677888888888887643 23345666776665554 4555566888888888888877665
Q ss_pred cCchH-HHHHHHHHHH----hcCC--CCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhc---CCh
Q 005881 392 IPAIE-WGKQTHCCIV----KPGF--DSNVVIGSALVDMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQH---GLG 461 (672)
Q Consensus 392 ~~~~~-~a~~~~~~~~----~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~ 461 (672)
...-+ .-..+...++ +.|- .-++.....+...|.+.|++.+|+..|-.-...+...+..++.-+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 33211 2233333433 3322 236778888999999999999999877633222344444444433333 332
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHh
Q 005881 462 REALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRD 509 (672)
Q Consensus 462 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 509 (672)
.++-- ..-. .+--|...|++..|..+|+...+.
T Consensus 185 ~e~dl--------------f~~R-aVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 185 STVAE--------------FFSR-LVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHH--------------HHHH-HHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred chHHH--------------HHHH-HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 22111 1111 222345568899998888877643
No 243
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.50 E-value=1.7 Score=35.68 Aligned_cols=31 Identities=10% Similarity=0.201 Sum_probs=20.5
Q ss_pred chHHHHHHHHHhhccCChHHHHHHHHhCCCC
Q 005881 515 RMDHIASVVHLFACRGQTRRAYEFIKSSPIE 545 (672)
Q Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (672)
+.+.--.+..+|...|++++|+..++.+|.+
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 4455555667777777777777777776544
No 244
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.35 E-value=16 Score=33.94 Aligned_cols=129 Identities=10% Similarity=0.111 Sum_probs=77.9
Q ss_pred HHHHHhhcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHH----HHHHHHCCCCCChhhHHHHHHHhhccC
Q 005881 217 GLINLYAKCEKLDLASRVFSNIQLPDLTAWSALIGGYAQLGKACEAIDL----FVKMFSSGLMPSEVTFSYVLGAFADVK 292 (672)
Q Consensus 217 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~t~~~ll~~~~~~~ 292 (672)
++..=|.+.+++++|.+++.. -...+.+.|+...|.++ ++...+.+++++..+...++..+....
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 344446677777777776422 23345666776665554 555566788888888888887766533
Q ss_pred C-chhHHHHHHHHHH----hC--CCCchHHHHHHHHHHHccCChHHHHHHHhhCCCCCcccHHHHHHHHHh
Q 005881 293 E-TIGGRQLHSLIIK----MG--FSSFTFVANTVLDFYSKCELLEESLKTFDEMDEHDVVSWNALIAGHLA 356 (672)
Q Consensus 293 ~-~~~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 356 (672)
. ...-.++...+++ .| -.-++.....+...|.+.+++.+|..-|-.-...|...+..++.-+..
T Consensus 107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLC 177 (312)
T ss_dssp TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 2 1123344444443 32 224677788888899999999998887753322234445444444433
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.28 E-value=1.2 Score=43.57 Aligned_cols=67 Identities=7% Similarity=-0.041 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhh-----CCCccCC
Q 005881 551 WRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKE-----KSLKKDT 617 (672)
Q Consensus 551 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~ 617 (672)
...++..+...|+.+++...++.++..+|-+...+..++.+|.+.|+..+|.+.|+...+ .|+.+.+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 344566778889999999999999999999888999999999999999999999887653 3555544
No 246
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=88.08 E-value=8.3 Score=30.35 Aligned_cols=64 Identities=13% Similarity=-0.064 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhcCC
Q 005881 145 WVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCASVLGACAVLGNLKVGMQIHSLVFKCALE 209 (672)
Q Consensus 145 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 209 (672)
.+..+..+...|+-++-.+++..+.. ..+|++.....+-.+|.+.|+..++.+++.+.-+.|++
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 44455556666666666666655432 24555666666666666666666666666666555543
No 247
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.39 E-value=0.71 Score=41.42 Aligned_cols=50 Identities=8% Similarity=0.039 Sum_probs=25.1
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 005881 560 THKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMK 609 (672)
Q Consensus 560 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 609 (672)
+.|++++++...+..++.+|.|+..-..|..+++-.|+|+.|.+-++...
T Consensus 9 ~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555554444443
No 248
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.09 E-value=4.3 Score=36.43 Aligned_cols=52 Identities=13% Similarity=0.014 Sum_probs=26.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhH
Q 005881 455 YAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMI 507 (672)
Q Consensus 455 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 507 (672)
..+.|+.++|++....-++.. +-|...-..++..+|-.|++++|..-++...
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344555555555555555542 3333344445555555666666655555444
No 249
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.03 E-value=38 Score=36.87 Aligned_cols=259 Identities=11% Similarity=0.043 Sum_probs=121.4
Q ss_pred HhhccCCchhHHHHHHHHHHhC--CCCchHHHHHHHHHHHccCChHHHHHHHhhCCC-CC--------c-c-cHHHHHHH
Q 005881 287 AFADVKETIGGRQLHSLIIKMG--FSSFTFVANTVLDFYSKCELLEESLKTFDEMDE-HD--------V-V-SWNALIAG 353 (672)
Q Consensus 287 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~--------~-~-~~~~li~~ 353 (672)
+....|+.+++..++......+ -.+....-..+.-+...+|..+++..++..... ++ . + .-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4456677777766665544321 111222333333445555655556665544332 22 1 1 11222223
Q ss_pred HHhcCC-hhHHHHHHHHHHhCCCCCChHHHH--HHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHH--HHhcC
Q 005881 354 HLASCH-YGEAIELLKDMLFEGHCPNLYTYS--NILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDM--YAKCG 428 (672)
Q Consensus 354 ~~~~~~-~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g 428 (672)
++-.|. -+++.+.+..+....- +...... ++-..+...|+.+....++..+.+.. +..+...+..+ +...|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 333332 2456666666654321 1111111 12223456667677777776665432 12222223333 33556
Q ss_pred CHHHHHHHHhhCC-CCCch-hHH---HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 005881 429 RLNDARKVFDHLS-SKNLV-SWN---TMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYF 503 (672)
Q Consensus 429 ~~~~A~~~~~~~~-~~~~~-~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 503 (672)
+.+.+..+.+.+. ..++. -|. ++..+|+-.|+.....++++.+.... ..+......+.-++...|+.+.+.+++
T Consensus 539 ~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 539 RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 7666666666654 23332 232 23445667777766666887777631 112222222233344455555556666
Q ss_pred HHhHHhhCCCCchHHHHHHHHHhhccCCh-HHHHHHHHhCCCCCCHHHHH
Q 005881 504 NSMIRDHGISPRMDHIASVVHLFACRGQT-RRAYEFIKSSPIEPNKVVWR 552 (672)
Q Consensus 504 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~ 552 (672)
+.+.+ ...|....-..+.-+....|.. .+|.+.+..+.-.+|..+-.
T Consensus 618 ~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq 665 (963)
T 4ady_A 618 QLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQ 665 (963)
T ss_dssp TTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHH
T ss_pred HHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHH
Confidence 54442 1234444444444444445543 56666766654455555443
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.61 E-value=4.8 Score=33.04 Aligned_cols=121 Identities=8% Similarity=0.041 Sum_probs=58.3
Q ss_pred CCCCCHH--HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCc-------hHHHHHHHHHhhccCChHHHHHHHHhC---
Q 005881 475 KIKPNDN--TFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPR-------MDHIASVVHLFACRGQTRRAYEFIKSS--- 542 (672)
Q Consensus 475 g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 542 (672)
|+.|... ++..-+..+...|.++.|+-+...+....+..|+ ..++..+++++...|++.+|...|++.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4445443 2334455566667777777666554433222333 135566677777777777777776541
Q ss_pred ----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 005881 543 ----PIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMK 609 (672)
Q Consensus 543 ----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 609 (672)
.-.|+. ..++. . ......-..+ +.+.+.-..++.+|.+.|++++|..+++.+.
T Consensus 93 ~k~l~k~~s~--~~~~~-~----------~ss~p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 93 KKALSKTSKV--RPSTG-N----------SASTPQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHCC---------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHhcCCCc--ccccc-c----------cCCCcccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 111111 10010 0 0000000111 2234566678888888888888888888753
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.25 E-value=4.6 Score=39.38 Aligned_cols=70 Identities=9% Similarity=0.064 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHH----hhCCCCchHHH
Q 005881 449 NTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIR----DHGISPRMDHI 519 (672)
Q Consensus 449 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 519 (672)
..++..+...|++++|+..+..+.... +-+...+..++.++...|+..+|++.|+.+.+ ..|+.|+..+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 345666777888888888888877642 44666788888888888888888888877643 45777776553
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.86 E-value=4.8 Score=29.65 Aligned_cols=63 Identities=11% Similarity=0.114 Sum_probs=47.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 005881 460 LGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVH 524 (672)
Q Consensus 460 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 524 (672)
+.-+..+-++.+....+-|++....+.+.||.+.+++..|.++|+.+..+.+.. ..+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 334566667777777789999999999999999999999999998887554333 445665544
No 253
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=85.57 E-value=8.8 Score=28.09 Aligned_cols=62 Identities=13% Similarity=0.003 Sum_probs=47.6
Q ss_pred HHHHHHccCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHH
Q 005881 319 VLDFYSKCELLEESLKTFDEMDEHDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYS 383 (672)
Q Consensus 319 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~ 383 (672)
-+..+...|++++|..+.+...-||...|-+|-. .+.|..+++..-+.++..+| .|....|.
T Consensus 45 R~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 45 RISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 3445677899999999999999999999977755 47788888888887887776 45544443
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.41 E-value=8.7 Score=30.14 Aligned_cols=39 Identities=8% Similarity=0.226 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHH
Q 005881 548 KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHI 586 (672)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 586 (672)
...+--+.-++.+.|+++.|++..+.+++.+|+|..+..
T Consensus 78 Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 78 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 335556777889999999999999999999997755433
No 255
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.39 E-value=12 Score=29.70 Aligned_cols=35 Identities=9% Similarity=0.265 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCch
Q 005881 550 VWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSA 584 (672)
Q Consensus 550 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 584 (672)
..-.+.-++.+.|+++.|++..+.+++.+|+|..+
T Consensus 79 cLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 79 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 44456677999999999999999999999977543
No 256
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=85.03 E-value=9.4 Score=27.98 Aligned_cols=62 Identities=15% Similarity=0.087 Sum_probs=46.9
Q ss_pred HHHHHHccCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHH
Q 005881 319 VLDFYSKCELLEESLKTFDEMDEHDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYS 383 (672)
Q Consensus 319 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~ 383 (672)
-+..+...|++++|..+.+...-||...|-+|-. .+.|..+++..-+.++..+| .|....|.
T Consensus 46 R~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 46 RLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 3445677899999999999999999999987765 36777888888777777765 45444443
No 257
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.92 E-value=9.5 Score=28.13 Aligned_cols=64 Identities=16% Similarity=0.045 Sum_probs=47.4
Q ss_pred CchhHHHHHHHhHhCCCCCCcccHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHHHHHH
Q 005881 56 MPEVALNYFRLMVCCVLEPNYYTYVGAVSACASRGDARSGKEIHGRMYRSGLELNSHVSNCLINM 120 (672)
Q Consensus 56 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 120 (672)
+.-+..+-++.+....+-|++....+.+++|-+.+++..|.++++-++..- .....+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHH
Confidence 334566667777777788999999999999999999999999998887653 2334567666653
No 258
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.58 E-value=29 Score=32.47 Aligned_cols=166 Identities=12% Similarity=0.035 Sum_probs=98.9
Q ss_pred HHHHHHHHccCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHH----HHHHhCCCCCChHHHHHHHHHHcCc
Q 005881 317 NTVLDFYSKCELLEESLKTFDEMDEHDVVSWNALIAGHLASCHYGEAIELL----KDMLFEGHCPNLYTYSNILNISSDI 392 (672)
Q Consensus 317 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~~~ 392 (672)
.++..-|.+.+++++|.+++.. -...+.+.|+...|-++- +-..+.++++|..+...++..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 4566667888888888887543 233455667766554443 5555668888888888888777665
Q ss_pred CchH-HHHHHHHHHH----hcC--CCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHH
Q 005881 393 PAIE-WGKQTHCCIV----KPG--FDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREAL 465 (672)
Q Consensus 393 ~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 465 (672)
..-+ .-..+.+.++ +.| ..-++.....+...|.+.+++.+|+..|-.-..+.+..+..++.-+...+...+
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e-- 185 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT-- 185 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG--
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc--
Confidence 5322 2233333333 333 234677788899999999999999988843223333555544444433332111
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 005881 466 EIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIR 508 (672)
Q Consensus 466 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 508 (672)
+|...-. .+--|...+++..|..+++...+
T Consensus 186 ------------~dlfiaR-aVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 ------------APLYCAR-AVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ------------HHHHHHH-HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------HHHHHHH-HHHHHHHhCCHHHHHHHHHHHHH
Confidence 1111222 22235556788888887766653
No 259
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=82.21 E-value=52 Score=34.36 Aligned_cols=22 Identities=9% Similarity=-0.014 Sum_probs=17.9
Q ss_pred hccCChHHHHHHHHhCCCCCCH
Q 005881 527 ACRGQTRRAYEFIKSSPIEPNK 548 (672)
Q Consensus 527 ~~~g~~~~A~~~~~~~~~~p~~ 548 (672)
...|++++|++.++++++-|..
T Consensus 549 ~~~g~~~~AL~~i~~L~llPl~ 570 (661)
T 2qx5_A 549 YFNKQWQETLSQMELLDLLPFS 570 (661)
T ss_dssp HHTTCHHHHHHHHHHTSCSCC-
T ss_pred HHcCCHHHHHHHHHhCCCCCCC
Confidence 6789999999999998777743
No 260
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=81.98 E-value=15 Score=38.94 Aligned_cols=53 Identities=9% Similarity=-0.022 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcC
Q 005881 543 PIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEAN 596 (672)
Q Consensus 543 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 596 (672)
..+-...-|..|...+.+.++.++|..+|+..+... -++.++..|..+|.+.+
T Consensus 608 ~~kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~R-Fs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 608 DEKHSGLEWELLGLIMLRTWHWEDAVACLRTSIVAR-FDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp SCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHSCC
T ss_pred hcccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhcC
Confidence 344567788888888888889999999999988765 37778888888888876
No 261
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=81.77 E-value=23 Score=40.34 Aligned_cols=164 Identities=8% Similarity=-0.014 Sum_probs=94.7
Q ss_pred HHHHHHHHccCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchH
Q 005881 317 NTVLDFYSKCELLEESLKTFDEMDEHDVVSWNALIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIE 396 (672)
Q Consensus 317 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 396 (672)
..++..+.+.+..+.+..+..-.+. +...--.+..+|...|++++|.+.|.+... |+..+.... ....
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------~~~~ 883 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------AVLR 883 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------SSHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------hhhc
Confidence 3466667777888777776655543 333334455678889999999999987532 222111100 0000
Q ss_pred HHHHHHHHHHhc-CC-CCcccHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCc----hhHHHHHHHHHhcCChHHHHH
Q 005881 397 WGKQTHCCIVKP-GF-DSNVVIGSALVDMYAKCGRLNDARKVFDHLS----SKNL----VSWNTMLVGYAQHGLGREALE 466 (672)
Q Consensus 397 ~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~g~~~~A~~ 466 (672)
. +..+... .. ..-..-|.-++..+.+.+.++.+.++-.... ..+. ..|..+..++...|++++|..
T Consensus 884 ~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 884 E----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp H----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred c----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 0 0111111 00 1112235566667777777776665544322 2221 257888889999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhccCcHHH
Q 005881 467 IYSMMQENKIKPNDNTFIGVLSACVHIGLVEE 498 (672)
Q Consensus 467 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 498 (672)
.+-.+..... -...+..|+..++..|..+.
T Consensus 960 aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 960 ALMVLSTTPL--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHSSS--CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHhCCCHHH--HHHHHHHHHHHHHhCCChhh
Confidence 8888876533 34566777777776666544
No 262
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=80.64 E-value=24 Score=31.92 Aligned_cols=47 Identities=11% Similarity=0.046 Sum_probs=23.3
Q ss_pred cCCchhHHHHHHHHHHhCCCCchH--HHHHHHHHHHccCChHHHHHHHh
Q 005881 291 VKETIGGRQLHSLIIKMGFSSFTF--VANTVLDFYSKCELLEESLKTFD 337 (672)
Q Consensus 291 ~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~ 337 (672)
.++.....++.+.+.+.|..++.. ...+.+...++.|+.+-+..+++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 444444455666666666544322 11223344445566665555555
No 263
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=80.55 E-value=23 Score=32.02 Aligned_cols=118 Identities=14% Similarity=0.159 Sum_probs=61.4
Q ss_pred hHHHHHHhcCCChhHHHHHhccCCCCCcc---hHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCccc--HHHHHHHHhc
Q 005881 14 NHLLLMYVKFSRINDAQKLFDEMPERNVI---SWSALISGFSQIGMPEVALNYFRLMVCCVLEPNYYT--YVGAVSACAS 88 (672)
Q Consensus 14 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~ 88 (672)
++.+...++.|+++.+..+++.-..++.. .-.+.+...+..|+.+ +++.+.+.|..|+... -.+.+...+.
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 81 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLAAI 81 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 44566667788888888888765443221 1123344445556643 4445555565554321 1233444445
Q ss_pred CCChhhHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCChHHHHHHhhccCC
Q 005881 89 RGDARSGKEIHGRMYRSGLELNSHV--SNCLINMYGKCGLLSSAQFVFDASLE 139 (672)
Q Consensus 89 ~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~ 139 (672)
.|+.+ +.+.+.+.|..++... -.+.+...+..|+.+-+..+++....
T Consensus 82 ~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 130 (285)
T 1wdy_A 82 AGSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN 130 (285)
T ss_dssp HTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cCCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCC
Confidence 55544 4445555665443221 11234445566777777777665443
No 264
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=80.34 E-value=15 Score=26.93 Aligned_cols=86 Identities=15% Similarity=0.089 Sum_probs=54.5
Q ss_pred chHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005881 394 AIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQE 473 (672)
Q Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 473 (672)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+....||...|-+|.. .+.|-.+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34455555555444432 11111111234567899999999999999999999877644 467777787777778777
Q ss_pred CCCCCCHHHHH
Q 005881 474 NKIKPNDNTFI 484 (672)
Q Consensus 474 ~g~~p~~~~~~ 484 (672)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 76 55555554
No 265
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=79.62 E-value=16 Score=26.83 Aligned_cols=59 Identities=19% Similarity=0.284 Sum_probs=43.6
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 005881 423 MYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFI 484 (672)
Q Consensus 423 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 484 (672)
.+...|++++|..+.+....||...|-+|.. .+.|-.+++..-+.++..+| .|....|.
T Consensus 49 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 4557799999999999988999998877644 36677777777777777766 55555554
No 266
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=79.24 E-value=47 Score=32.06 Aligned_cols=162 Identities=10% Similarity=-0.024 Sum_probs=84.1
Q ss_pred HHHHHHHHHHcCcCchHHHHHHHHHHHhc-CCCC---cccHHHHHHHHHHhc-CCHHHHHHHHhhCC---CCCchhH---
Q 005881 380 YTYSNILNISSDIPAIEWGKQTHCCIVKP-GFDS---NVVIGSALVDMYAKC-GRLNDARKVFDHLS---SKNLVSW--- 448 (672)
Q Consensus 380 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~---~~~~~~~--- 448 (672)
.....+...|.+.|+.++..+++...... +.-+ ...+...+++.+... +..+.-.++..+.. +.+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777777777666655432 1111 233345566666553 22333333333222 1111233
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHhhccCcHHHHHHHHHHhHHhhC-CCCchHH-
Q 005881 449 ---NTMLVGYAQHGLGREALEIYSMMQENKIKPNDN-----TFIGVLSACVHIGLVEEGWHYFNSMIRDHG-ISPRMDH- 518 (672)
Q Consensus 449 ---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~- 518 (672)
.-++..|...|++.+|.+++.++.+.=-..|.. .+..-+..|...+++.++...+........ +.+++..
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 145677777888888877777776631111211 344455567777788887777776653321 2233322
Q ss_pred ---HHHHHHHhh-ccCChHHHHHHHHh
Q 005881 519 ---IASVVHLFA-CRGQTRRAYEFIKS 541 (672)
Q Consensus 519 ---~~~l~~~~~-~~g~~~~A~~~~~~ 541 (672)
..+-+-.+. ..+++.+|...|-+
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence 222233445 67777777766643
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=77.79 E-value=12 Score=29.30 Aligned_cols=60 Identities=13% Similarity=0.209 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 005881 463 EALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVH 524 (672)
Q Consensus 463 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 524 (672)
+..+-++.+....+-|++......+.+|.+.+++..|.++|+.+..+.+ +....|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 4556667777777899999999999999999999999999988875543 33555665554
No 268
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.47 E-value=62 Score=31.97 Aligned_cols=94 Identities=7% Similarity=0.058 Sum_probs=68.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHhhccCcHHHHHHHHHHhHHhh-CCC--Cc--hH
Q 005881 448 WNTMLVGYAQHGLGREALEIYSMMQEN--KIKPND---NTFIGVLSACVHIGLVEEGWHYFNSMIRDH-GIS--PR--MD 517 (672)
Q Consensus 448 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~--p~--~~ 517 (672)
...|...|...|++.+|.+++..+... |..+.. ..+..-++.|...+++.+|..+++++.... ... |+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 355778888999999999999988643 322221 256667788999999999999998874321 222 22 25
Q ss_pred HHHHHHHHhhccCChHHHHHHHHh
Q 005881 518 HIASVVHLFACRGQTRRAYEFIKS 541 (672)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~ 541 (672)
.+..++..+...+++.+|...|.+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e 243 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQE 243 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 677888888999999999877654
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.36 E-value=26 Score=29.88 Aligned_cols=53 Identities=8% Similarity=0.045 Sum_probs=33.0
Q ss_pred cCCHHHHHHHHHHHhc--CCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 005881 561 HKDLVLGRYAAEKILS--TDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKSL 613 (672)
Q Consensus 561 ~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 613 (672)
.++......+|..+.. ++-..+..|...+..+...|++++|.++++.-.+++.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 3345566666666643 4445566666777777777777777777776555443
No 270
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=75.54 E-value=20 Score=31.54 Aligned_cols=28 Identities=11% Similarity=-0.120 Sum_probs=14.2
Q ss_pred HHHHHcCCCchhHHHHHHHhHhCCCCCC
Q 005881 48 ISGFSQIGMPEVALNYFRLMVCCVLEPN 75 (672)
Q Consensus 48 i~~~~~~g~~~~a~~~~~~m~~~~~~p~ 75 (672)
+...++.|+.+-+..+++.+.+.|..++
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 3344455565555555555554444443
No 271
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=74.36 E-value=24 Score=27.71 Aligned_cols=60 Identities=17% Similarity=0.097 Sum_probs=42.5
Q ss_pred hHHHHHHHhHhCCCCCCcccHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHHHHH
Q 005881 59 VALNYFRLMVCCVLEPNYYTYVGAVSACASRGDARSGKEIHGRMYRSGLELNSHVSNCLIN 119 (672)
Q Consensus 59 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 119 (672)
+..+-++.+...++-|++......|++|-+.+++..|..+++-++..- .+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 455555666666778888888888888888888888888888777553 333556666554
No 272
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.07 E-value=72 Score=31.52 Aligned_cols=149 Identities=11% Similarity=-0.028 Sum_probs=81.9
Q ss_pred CCchhHHHHHHHhHhC-----CCCCCcccHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHHHHH----HHHhcC
Q 005881 55 GMPEVALNYFRLMVCC-----VLEPNYYTYVGAVSACASRGDARSGKEIHGRMYRSGLELNSHVSNCLIN----MYGKCG 125 (672)
Q Consensus 55 g~~~~a~~~~~~m~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~----~~~~~g 125 (672)
|++++|++.+..+.+. +..-+......++..|...++++...+.+..+.+..-.. ...-..+++ ......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 5667777666555321 123334456677788888888887777666555432121 122223332 222223
Q ss_pred ChH--HHHHHhhccCCC-C---------cccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHh
Q 005881 126 LLS--SAQFVFDASLER-N---------SISWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAIS-----EFSCASVLGACA 188 (672)
Q Consensus 126 ~~~--~a~~~~~~~~~~-~---------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~t~~~ll~~~~ 188 (672)
..+ .-..+.+....- + ......|...+...|++.+|.+++..+...-...+ ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 222 222333322211 1 11234567778888999999999888865311111 224556666777
Q ss_pred ccCChHHHHHHHHHHH
Q 005881 189 VLGNLKVGMQIHSLVF 204 (672)
Q Consensus 189 ~~~~~~~a~~~~~~~~ 204 (672)
..+++..|..+...+.
T Consensus 189 ~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 189 LKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
Confidence 7778887777777654
No 273
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=74.02 E-value=89 Score=32.60 Aligned_cols=83 Identities=14% Similarity=0.035 Sum_probs=44.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCchHHHHHHHHHHHhcCCCCcccHHHHHHHHHHh---
Q 005881 350 LIAGHLASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPAIEWGKQTHCCIVKPGFDSNVVIGSALVDMYAK--- 426 (672)
Q Consensus 350 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 426 (672)
....+.-.|+++.|++.+-+. ...+.+.+...+..+.-.+- ...++.. ..+ .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~--~~~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLT--KKP-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCccccc--CCC-cc-cccHHHHHHHHHHHhh
Confidence 455666789999999987754 35566666666655433321 1111110 001 11 2225667777765
Q ss_pred cCCHHHHHHHHhhCCCC
Q 005881 427 CGRLNDARKVFDHLSSK 443 (672)
Q Consensus 427 ~g~~~~A~~~~~~~~~~ 443 (672)
..++.+|.++|--+.-+
T Consensus 369 ~td~~~Al~Y~~li~l~ 385 (661)
T 2qx5_A 369 YSDPRVAVEYLVLITLN 385 (661)
T ss_dssp TTCHHHHHHHHHGGGGS
T ss_pred cCCHHHHHHHHHHHhcc
Confidence 57888888887766433
No 274
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=73.58 E-value=21 Score=40.64 Aligned_cols=148 Identities=5% Similarity=-0.061 Sum_probs=76.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhc
Q 005881 449 NTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFAC 528 (672)
Q Consensus 449 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 528 (672)
..++..+...+.++.+.++..- ++-+...--.+..++...|++++|.+.|++... ++..+...
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~--~~~~~~~l---------- 878 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQ---------- 878 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--SCTTCCCS----------
T ss_pred HHHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hhcccchh----------
Confidence 3456666777777766554322 334444434456677788888888888876531 22221100
Q ss_pred cCChHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc-----hHHHHHHHHHhcCChHHHH
Q 005881 529 RGQTRRAYEFIKSSPI-EPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTS-----AHIMLSNVYAEANMWDETA 602 (672)
Q Consensus 529 ~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~a~ 602 (672)
.....+...+...... ..-..-|..++..+.++|.++.+.+..+.+++..+.+.. .|..+-..+...|++++|-
T Consensus 879 ~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 879 FAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp CSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred hhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 0000111111111111 112233455555666667777777777666654432221 3455566666777777776
Q ss_pred HHHHHHhhCCC
Q 005881 603 KVRKIMKEKSL 613 (672)
Q Consensus 603 ~~~~~~~~~~~ 613 (672)
..+..+.....
T Consensus 959 ~aL~~~pd~~~ 969 (1139)
T 4fhn_B 959 VALMVLSTTPL 969 (1139)
T ss_dssp HHHHHHHHSSS
T ss_pred HHHHhCCCHHH
Confidence 66665554433
No 275
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=71.48 E-value=1e+02 Score=32.04 Aligned_cols=19 Identities=5% Similarity=-0.076 Sum_probs=10.7
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 005881 253 YAQLGKACEAIDLFVKMFS 271 (672)
Q Consensus 253 ~~~~~~~~~a~~~~~~m~~ 271 (672)
..+.|+++.|...|..|..
T Consensus 295 Alr~~d~~~a~~~~~~l~~ 313 (618)
T 1qsa_A 295 ALGTGDRRGLNTWLARLPM 313 (618)
T ss_dssp HHHHTCHHHHHHHHHHSCT
T ss_pred HHHCCCHHHHHHHHHHccc
Confidence 3345666666666665543
No 276
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=70.02 E-value=76 Score=30.09 Aligned_cols=67 Identities=12% Similarity=0.216 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCc---hhHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHHHH
Q 005881 417 GSALVDMYAKCGRLNDARKVFDHLSSKNL---VSWNTMLVGYAQHGL--GREALEIYSMMQENKIKPNDNTF 483 (672)
Q Consensus 417 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~ 483 (672)
.+.++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+...+++..+...|+-+.....
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~ 291 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 291 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 35678888899999999999999987643 234444555544333 34577788888877765544433
No 277
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=69.99 E-value=43 Score=30.55 Aligned_cols=183 Identities=9% Similarity=0.012 Sum_probs=86.4
Q ss_pred HHHHcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCC
Q 005881 49 SGFSQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSACASRGDARSGKEIHGRMYRSGLELNSHV--SNCLINMYGKCGL 126 (672)
Q Consensus 49 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~ 126 (672)
...+..|+.+-+. .+.+.|..++...-.+.+...+..|+.+-+. .+.+.|..++... -.+.+...+..|.
T Consensus 36 ~~A~~~g~~~~v~----~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~ga~~~~~d~~g~t~L~~A~~~g~ 107 (285)
T 3kea_A 36 YYAIADNNVRLVC----TLLNAGALKNLLENEFPLHQAATLEDTKIVK----ILLFSGLDDSQFDDKGNTALYYAVDSGN 107 (285)
T ss_dssp HHHHHTTCHHHHH----HHHHTTGGGSCCTTCCHHHHHTTSSSCHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHcCCHHHHH----HHHhCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHHCCCCCCCcCCCCCcHHHHHHHcCC
Confidence 3344456554433 3334454444332234555566667765443 3445565443221 1123444556677
Q ss_pred hHHHHHHhhccCCC---CcccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh-hHHHHHHHHhccCChHHHHHHHHH
Q 005881 127 LSSAQFVFDASLER---NSISWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEF-SCASVLGACAVLGNLKVGMQIHSL 202 (672)
Q Consensus 127 ~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~ 202 (672)
.+-+..+++..... +..-|.+.+...+..|+.+ +++.+.+.|..+... .-.+.+...+..|..+.+..+++.
T Consensus 108 ~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 108 MQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS----IVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 77777776653332 3333334444455566543 444445555444222 334455555666776655555544
Q ss_pred HHHhcCCCcHHHHHHHHHHhhcCCChhHHHHHHhcCCCCCcc
Q 005881 203 VFKCALEFDKFVAMGLINLYAKCEKLDLASRVFSNIQLPDLT 244 (672)
Q Consensus 203 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 244 (672)
-..-... +..-.+..+...+..|+.+-+.-+++.-..++..
T Consensus 184 gad~n~~-~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 184 MTSTNTN-NSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSA 224 (285)
T ss_dssp HHHTCTT-CCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTT
T ss_pred CCCCCcc-cCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC
Confidence 2221111 1111111234445566766666666654444433
No 278
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.73 E-value=14 Score=36.52 Aligned_cols=96 Identities=11% Similarity=-0.048 Sum_probs=68.5
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHhhCCC------CCchhHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCCHHH--H
Q 005881 415 VIGSALVDMYAKCGRLNDARKVFDHLSS------KNLVSWNTMLVGYAQHGLGREALEIYSMMQE---NKIKPNDNT--F 483 (672)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~--~ 483 (672)
.+...+.+.|.++|+++.|.+.|.++.. .-+..+-.++..+...+++..+...+++... .+-.|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3556788999999999999999988762 2234677778888889999999999888754 333333332 2
Q ss_pred HHHHHHhhccCcHHHHHHHHHHhHHhh
Q 005881 484 IGVLSACVHIGLVEEGWHYFNSMIRDH 510 (672)
Q Consensus 484 ~~ll~~~~~~g~~~~a~~~~~~~~~~~ 510 (672)
..-...+...+++.+|...|-.....+
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 222334567788999999998887544
No 279
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=69.58 E-value=53 Score=28.10 Aligned_cols=168 Identities=11% Similarity=0.085 Sum_probs=93.8
Q ss_pred CChhHHHHHhccCCCCCcchHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhcCCChhhHHHHHHHHH
Q 005881 24 SRINDAQKLFDEMPERNVISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSACASRGDARSGKEIHGRMY 103 (672)
Q Consensus 24 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 103 (672)
++.+....+...+..++...-...+..+.+.|..+ +...+..+.. .++...-...+.++...++.+....+.. +.
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l 90 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIK-AL 90 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHH-HT
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHH-HH
Confidence 34445555555666677666666777777776643 3333334433 2455555666666666665443333332 22
Q ss_pred HhCCCCChhHHHHHHHHHHhcCChHHHHHHhhccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 005881 104 RSGLELNSHVSNCLINMYGKCGLLSSAQFVFDASLERNSISWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCASV 183 (672)
Q Consensus 104 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 183 (672)
-.++..+....+.++.+.|+.+....+.+.+..++...-...+.++.+.|..+ +...+..+.. .++...-...
T Consensus 91 ---~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a 163 (211)
T 3ltm_A 91 ---KDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSA 163 (211)
T ss_dssp ---TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHH
T ss_pred ---cCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHH
Confidence 24677777777788877777655555555555566656566666666666543 3444444433 3455555566
Q ss_pred HHHHhccCChHHHHHHHHHHH
Q 005881 184 LGACAVLGNLKVGMQIHSLVF 204 (672)
Q Consensus 184 l~~~~~~~~~~~a~~~~~~~~ 204 (672)
+.++...+.. .+...+..+.
T Consensus 164 ~~aL~~~~~~-~~~~~L~~~l 183 (211)
T 3ltm_A 164 ADALGEIGGE-RVRAAMEKLA 183 (211)
T ss_dssp HHHHHHHCSH-HHHHHHHHHH
T ss_pred HHHHHHhCch-hHHHHHHHHH
Confidence 6666665553 3333333333
No 280
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=69.48 E-value=73 Score=31.19 Aligned_cols=208 Identities=12% Similarity=0.073 Sum_probs=97.1
Q ss_pred hHHHHHHhcCCChhHHHHHhccCCCCCcch--HHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCcc--cHHHHHHHHhcC
Q 005881 14 NHLLLMYVKFSRINDAQKLFDEMPERNVIS--WSALISGFSQIGMPEVALNYFRLMVCCVLEPNYY--TYVGAVSACASR 89 (672)
Q Consensus 14 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~ 89 (672)
.+.+..-+..|+.+-+..+++.-..++... ..+.+..-+..|+.+-+.- +.+.|..++.. .-.+.+...+..
T Consensus 15 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~g~t~L~~A~~~ 90 (437)
T 1n11_A 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKY----LLQNKAKVNAKAKDDQTPLHCAARI 90 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHH----HHHHTCCSSCCCTTSCCHHHHHHHH
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHhCCCCCCCCCCCCCCHHHHHHHC
Confidence 345555677888888888887644333221 1223444455566544433 33344444322 112344555566
Q ss_pred CChhhHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCChHHHHHHhhccCCC---CcccHHHHHHHHHhcCChHHHHHH
Q 005881 90 GDARSGKEIHGRMYRSGLELNSHV--SNCLINMYGKCGLLSSAQFVFDASLER---NSISWVSLLSSYCQCGEHVHGLKI 164 (672)
Q Consensus 90 ~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~ 164 (672)
|+.+ +.+.+.+.|..++... -.+.+...++.|..+-+..+++..... +...++. +...+..|+.+ +
T Consensus 91 g~~~----~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~-L~~A~~~g~~~----~ 161 (437)
T 1n11_A 91 GHTN----MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTP-LHVAAKYGKVR----V 161 (437)
T ss_dssp TCHH----HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHH----H
T ss_pred CCHH----HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCH-HHHHHHcCCHH----H
Confidence 6654 4444555665544221 122344456677887777777654332 2222223 33334555543 3
Q ss_pred HHHHHhCCCCCChhh--HHHHHHHHhccCChHHHHHHHHHHHHhcCCCcHHH--HHHHHHHhhcCCChhHHHHHHhcC
Q 005881 165 FLLSRKSGVAISEFS--CASVLGACAVLGNLKVGMQIHSLVFKCALEFDKFV--AMGLINLYAKCEKLDLASRVFSNI 238 (672)
Q Consensus 165 ~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~ 238 (672)
++.+.+.|..|+... -.+.+...+..|+.+ +.+.+++.|..++... ....+...+..|+.+-+..+++.-
T Consensus 162 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 235 (437)
T 1n11_A 162 AELLLERDAHPNAAGKNGLTPLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 235 (437)
T ss_dssp HHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 444445555444221 112233334445543 3344444444332211 112233344556666555555543
No 281
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=67.91 E-value=66 Score=29.75 Aligned_cols=60 Identities=13% Similarity=0.223 Sum_probs=44.5
Q ss_pred HHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 005881 538 FIKSSPIEPN--KVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 538 ~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 611 (672)
+|....+.|. ..+..+.+..+.+.+++..|....++++++.|.. ...++|.++.....+.
T Consensus 195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~--------------~~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG--------------PRAEQARKIKNKADSM 256 (325)
T ss_dssp HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS--------------HHHHHHHHHHHHHHTS
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH--------------HHHHHHHHHHHHHhcC
Confidence 3555566664 3356777888999999999999999999999942 2356677777776543
No 282
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=66.01 E-value=13 Score=33.39 Aligned_cols=92 Identities=7% Similarity=-0.018 Sum_probs=47.5
Q ss_pred HHHHHcCCCchhHHHHHHHhHhCCCCCCccc-------HHHHHHHHh--cCCChhhHHHHHHHHHHhCC---------C-
Q 005881 48 ISGFSQIGMPEVALNYFRLMVCCVLEPNYYT-------YVGAVSACA--SRGDARSGKEIHGRMYRSGL---------E- 108 (672)
Q Consensus 48 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~---------~- 108 (672)
+...++.|+.+....+++.+.+.|..++... .+.|..++. +.|+.+-+..+++.-...+. .
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 3344566777777777776666665555332 223333332 55777766666655433110 0
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHhhccCCC
Q 005881 109 LNSHVSNCLINMYGKCGLLSSAQFVFDASLER 140 (672)
Q Consensus 109 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 140 (672)
.|..- .+.+...+..|..+-+..+++.....
T Consensus 89 ~d~~g-~t~L~~A~~~g~~~~v~~Ll~~ga~~ 119 (260)
T 3jxi_A 89 VYYRG-QTALHIAIERRCKHYVELLVEKGADV 119 (260)
T ss_dssp SSEES-BCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred cccCC-CCHHHHHHHcCCHHHHHHHHhCCCCc
Confidence 00011 12334445667777777777654443
No 283
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=65.66 E-value=52 Score=26.58 Aligned_cols=48 Identities=6% Similarity=-0.072 Sum_probs=34.2
Q ss_pred HHHHHHHHhc--CCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 005881 567 GRYAAEKILS--TDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKSLK 614 (672)
Q Consensus 567 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 614 (672)
...+|+.+.. ++-..+..|...+..+...|++++|.++++.-.+++.+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 6666776654 44456677778888888888888888888876665443
No 284
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=65.14 E-value=45 Score=29.13 Aligned_cols=17 Identities=12% Similarity=0.200 Sum_probs=9.4
Q ss_pred HHHhcCCChhHHHHHhc
Q 005881 18 LMYVKFSRINDAQKLFD 34 (672)
Q Consensus 18 ~~~~~~g~~~~a~~~~~ 34 (672)
...++.|+.+.+..+++
T Consensus 14 ~~A~~~g~~~~v~~Ll~ 30 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVN 30 (241)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 33455566666655554
No 285
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=63.92 E-value=25 Score=30.76 Aligned_cols=13 Identities=8% Similarity=0.373 Sum_probs=5.8
Q ss_pred cCCChhHHHHHhc
Q 005881 22 KFSRINDAQKLFD 34 (672)
Q Consensus 22 ~~g~~~~a~~~~~ 34 (672)
+.|+++....+++
T Consensus 18 ~~g~~~~~~~Ll~ 30 (240)
T 3eu9_A 18 QYGIYERCRELVE 30 (240)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCChHHHHHHHH
Confidence 4444444444444
No 286
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=62.63 E-value=80 Score=29.94 Aligned_cols=71 Identities=11% Similarity=0.123 Sum_probs=48.1
Q ss_pred HHHHHHHHccCChHHHHHHHhhCCCCCc---ccHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCChHHHHHHHH
Q 005881 317 NTVLDFYSKCELLEESLKTFDEMDEHDV---VSWNALIAGHLASCH--YGEAIELLKDMLFEGHCPNLYTYSNILN 387 (672)
Q Consensus 317 ~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 387 (672)
+.++.-|...++.++|...++++..|.. .....+..++-+.++ .+...+++..+...|+-+.......+.+
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 5788888999999999999999987642 233444445544333 3567788888888877665554444333
No 287
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=61.77 E-value=73 Score=26.90 Aligned_cols=48 Identities=10% Similarity=0.061 Sum_probs=18.2
Q ss_pred CcHHHHHHHHHHhhcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 005881 210 FDKFVAMGLINLYAKCEKLDLASRVFSNIQLPDLTAWSALIGGYAQLG 257 (672)
Q Consensus 210 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 257 (672)
++..+-...+.++.+.++.+....+.+.+..++...-...+.++.+.|
T Consensus 119 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 119 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp SSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 344444444444444443333333333333333333333334443333
No 288
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=59.84 E-value=99 Score=28.81 Aligned_cols=79 Identities=13% Similarity=0.050 Sum_probs=38.0
Q ss_pred HHHHHHHHHhCCCCchH--HHHHHHHHHHccCChHHHHHHHhhCC-C---CCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005881 298 RQLHSLIIKMGFSSFTF--VANTVLDFYSKCELLEESLKTFDEMD-E---HDVVSWNALIAGHLASCHYGEAIELLKDML 371 (672)
Q Consensus 298 ~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~-~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 371 (672)
..+.+.+++.|..++.. ...+.+...+..|..+.+..++..-. . .|..-++.|..+ ++.|+.+ +.+.++
T Consensus 219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~Ll 293 (337)
T 4g8k_A 219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA-VELKLKK----IAELLC 293 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHHHH
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHH-HHcCCHH----HHHHHH
Confidence 34455556666554322 11223445556777777666665321 1 222223333333 3445443 344455
Q ss_pred hCCCCCChHH
Q 005881 372 FEGHCPNLYT 381 (672)
Q Consensus 372 ~~g~~p~~~t 381 (672)
+.|..++..+
T Consensus 294 ~~GAd~n~~~ 303 (337)
T 4g8k_A 294 KRGASTDCGD 303 (337)
T ss_dssp TTSCSSTTCC
T ss_pred HCCCCCCCCC
Confidence 6676666544
No 289
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=59.69 E-value=1.1e+02 Score=28.42 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=13.2
Q ss_pred hHHHHHHhcCCChhHHHHHhccC
Q 005881 14 NHLLLMYVKFSRINDAQKLFDEM 36 (672)
Q Consensus 14 ~~ll~~~~~~g~~~~a~~~~~~~ 36 (672)
++.+-.-++.|+++-+..+++.=
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~G 48 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGG 48 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHT
T ss_pred ChHHHHHHHcCCHHHHHHHHHCC
Confidence 33444445667777666666653
No 290
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=59.06 E-value=72 Score=26.17 Aligned_cols=48 Identities=4% Similarity=-0.071 Sum_probs=29.5
Q ss_pred HHHHHHHHhc--CCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 005881 567 GRYAAEKILS--TDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKSLK 614 (672)
Q Consensus 567 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 614 (672)
...+|..+.. ++-..+..|...+..+...|++.+|.++++.-.+++.+
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 4445555543 44445666667777777777777777777766555443
No 291
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=58.31 E-value=1.4e+02 Score=29.07 Aligned_cols=18 Identities=17% Similarity=0.427 Sum_probs=8.7
Q ss_pred HHHHhcCChHHHHHHhhc
Q 005881 119 NMYGKCGLLSSAQFVFDA 136 (672)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~ 136 (672)
...+..|+.+-+..+++.
T Consensus 52 ~~A~~~g~~~~v~~Ll~~ 69 (437)
T 1n11_A 52 HMAARAGHTEVAKYLLQN 69 (437)
T ss_dssp HHHHHHTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhC
Confidence 333444555555555543
No 292
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=58.27 E-value=64 Score=27.10 Aligned_cols=150 Identities=9% Similarity=0.052 Sum_probs=69.7
Q ss_pred HHhcCCChhHHHHHhccCC-C---CCcchHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCccc--HHHHHHHHhcCCCh
Q 005881 19 MYVKFSRINDAQKLFDEMP-E---RNVISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNYYT--YVGAVSACASRGDA 92 (672)
Q Consensus 19 ~~~~~g~~~~a~~~~~~~~-~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~ 92 (672)
..+..|+.+....++..-. . ++..-++.| ...++.|+. ++++.+.+.|..++... -.+.+...+..|+.
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 85 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQVDEVDTEGNTPL-NIAVHNNDI----EIAKALIDRGADINLQNSISDSPYLYAGAQGRT 85 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHH-HHHHHHTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHH-HHHHHcCCH----HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 3456788888888887654 2 222223333 333444553 44455555565555432 12334444455665
Q ss_pred hhHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCChHHHHHHhhcc-CC---CCcccHHHHHHHHHhcCChHHHHHHHH
Q 005881 93 RSGKEIHGRMYRSGLELNSHV--SNCLINMYGKCGLLSSAQFVFDAS-LE---RNSISWVSLLSSYCQCGEHVHGLKIFL 166 (672)
Q Consensus 93 ~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~-~~---~~~~~~~~li~~~~~~g~~~~a~~~~~ 166 (672)
+-+..+++ ..+..++... -.+.+...++.|+.+-+..+++.. .. +|..-++.+..+.........-.++.+
T Consensus 86 ~~~~~Ll~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 86 EILAYMLK---HATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp HHHHHHHH---HSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred HHHHHHHh---ccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence 54443332 2222221110 112233445566766666666554 22 233334444444333222333355555
Q ss_pred HHHhCCCCCC
Q 005881 167 LSRKSGVAIS 176 (672)
Q Consensus 167 ~m~~~g~~p~ 176 (672)
.+.+.|..++
T Consensus 163 ~Ll~~ga~~~ 172 (201)
T 3hra_A 163 LLMENGADQS 172 (201)
T ss_dssp HHHHTTCCTT
T ss_pred HHHHCCCCCC
Confidence 5666665554
No 293
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=57.90 E-value=1.1e+02 Score=27.61 Aligned_cols=201 Identities=7% Similarity=-0.083 Sum_probs=100.6
Q ss_pred HHhccCCCCCcchHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhcCCChh-hHHHHHHHHHHh-CCC
Q 005881 31 KLFDEMPERNVISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSACASRGDAR-SGKEIHGRMYRS-GLE 108 (672)
Q Consensus 31 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~-g~~ 108 (672)
.++..+..+|...-...+.++...|. ..+...+..+... ++...-...+.++...|... ....++..+.+. --.
T Consensus 27 ~L~~~L~~~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~d---~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d 102 (280)
T 1oyz_A 27 ELFRLLDDHNSLKRISSARVLQLRGG-QDAVRLAIEFCSD---KNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALND 102 (280)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCC-HHHHHHHHHHHTC---SSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHccCC-chHHHHHHHHHcC---CCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcC
Confidence 34444555666555566667776664 4455555555542 45555556666666666322 222333322210 014
Q ss_pred CChhHHHHHHHHHHhcCC-----hHHHHHHh-hccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHH
Q 005881 109 LNSHVSNCLINMYGKCGL-----LSSAQFVF-DASLERNSISWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCAS 182 (672)
Q Consensus 109 ~~~~~~~~li~~~~~~g~-----~~~a~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 182 (672)
++..+....+.++.+.+. ...+...+ ..+..++...-...+.++...|+.+ +...+..+.. .++...-..
T Consensus 103 ~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~ 178 (280)
T 1oyz_A 103 KSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNW 178 (280)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHH
Confidence 577777777777776652 23344433 3345566666666777777777643 4444444443 345555555
Q ss_pred HHHHHhccCC-hHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHHHhcCCCCC
Q 005881 183 VLGACAVLGN-LKVGMQIHSLVFKCALEFDKFVAMGLINLYAKCEKLDLASRVFSNIQLPD 242 (672)
Q Consensus 183 ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 242 (672)
.+.++...+. ...+...+..+. -.++..+....+.++.+.|+......+...+..++
T Consensus 179 a~~aL~~~~~~~~~~~~~L~~~l---~d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d~~ 236 (280)
T 1oyz_A 179 AAFAININKYDNSDIRDCFVEML---QDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNT 236 (280)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHT---TCSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTSSS
T ss_pred HHHHHHhhccCcHHHHHHHHHHh---cCCCHHHHHHHHHHHHHhCCHhhHHHHHHHhcCcc
Confidence 5555554441 222222222222 23455555556666666665444444444443333
No 294
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.24 E-value=62 Score=31.80 Aligned_cols=94 Identities=6% Similarity=-0.039 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCcCchHHHHHHHHHHHhcC--CCCcccHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCchhHHHH--
Q 005881 381 TYSNILNISSDIPAIEWGKQTHCCIVKPG--FDSNVVIGSALVDMYAKCGRLNDARKVFDHLS-----SKNLVSWNTM-- 451 (672)
Q Consensus 381 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l-- 451 (672)
+...+...+.+.|+.+.|.+.+..+.... ...-..++-.++..+...+++..+...+.++. .++....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 55667788889999999999999988653 33345566677888888899999988888764 2333322221
Q ss_pred --HHHHHhcCChHHHHHHHHHHHHC
Q 005881 452 --LVGYAQHGLGREALEIYSMMQEN 474 (672)
Q Consensus 452 --i~~~~~~g~~~~A~~~~~~m~~~ 474 (672)
+..+...+++..|.+.|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 12234568899988888776553
No 295
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=55.50 E-value=43 Score=29.21 Aligned_cols=22 Identities=9% Similarity=0.009 Sum_probs=11.5
Q ss_pred HHHhhccCCchhHHHHHHHHHH
Q 005881 285 LGAFADVKETIGGRQLHSLIIK 306 (672)
Q Consensus 285 l~~~~~~~~~~~a~~~~~~~~~ 306 (672)
+......++...+.++.+.+.+
T Consensus 214 l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 214 LQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3444455555555555555543
No 296
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=54.62 E-value=96 Score=26.09 Aligned_cols=83 Identities=10% Similarity=-0.000 Sum_probs=35.4
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHH
Q 005881 420 LVDMYAKCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDNTFIGVLSACVHIGLVEEG 499 (672)
Q Consensus 420 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 499 (672)
.+.++.+.+..+....+...+..++...-...+.++...++. .+...+..+.. .++...-...+.++...|.. ++
T Consensus 96 a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~-~~ 170 (201)
T 3ltj_A 96 AAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGGE-RV 170 (201)
T ss_dssp HHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH-HH
T ss_pred HHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCch-hH
Confidence 333344444433333333333344444444444455554442 23333444433 34444444455555555543 34
Q ss_pred HHHHHHhH
Q 005881 500 WHYFNSMI 507 (672)
Q Consensus 500 ~~~~~~~~ 507 (672)
...+..+.
T Consensus 171 ~~~L~~~l 178 (201)
T 3ltj_A 171 RAAMEKLA 178 (201)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 297
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=53.43 E-value=94 Score=25.98 Aligned_cols=89 Identities=9% Similarity=0.083 Sum_probs=42.8
Q ss_pred HhcCChHHHHHHhhccCCC-C-cccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhh---HHHHHHHHh-ccCChHH
Q 005881 122 GKCGLLSSAQFVFDASLER-N-SISWVSLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFS---CASVLGACA-VLGNLKV 195 (672)
Q Consensus 122 ~~~g~~~~a~~~~~~~~~~-~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t---~~~ll~~~~-~~~~~~~ 195 (672)
++.|+++....++..-... + ..-++ .+...+..|+.+.-.++.+.+.+.|..++... .+.+.-++. ...+...
T Consensus 14 a~~g~~~~~~~l~~~~~~~~~~~~g~T-~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~ 92 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYEDKESVLKSN-ILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITG 92 (186)
T ss_dssp HHHSCHHHHHHHHHHSSSCHHHHHTTT-HHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHH
T ss_pred HHcCCHHHHHHHHhcCcccccccCCCC-HHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhh
Confidence 4456666665555543221 1 11122 33344455666656667777777777665431 222222221 1223333
Q ss_pred HHHHHHHHHHhcCCCc
Q 005881 196 GMQIHSLVFKCALEFD 211 (672)
Q Consensus 196 a~~~~~~~~~~~~~~~ 211 (672)
..++.+.+++.|..++
T Consensus 93 ~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 93 TTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHHHHHHTTCCSS
T ss_pred HHHHHHHHHHCCCCCC
Confidence 4455666666665544
No 298
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=53.34 E-value=73 Score=26.71 Aligned_cols=16 Identities=0% Similarity=-0.045 Sum_probs=8.6
Q ss_pred HhcCChHHHHHHhhcc
Q 005881 122 GKCGLLSSAQFVFDAS 137 (672)
Q Consensus 122 ~~~g~~~~a~~~~~~~ 137 (672)
+..|+.+....++...
T Consensus 13 ~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 13 ANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHTTCHHHHHHHHTCT
T ss_pred HHhccHHHHHHHHHcC
Confidence 4455556555555543
No 299
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=51.56 E-value=67 Score=27.85 Aligned_cols=49 Identities=6% Similarity=0.125 Sum_probs=23.1
Q ss_pred HhcCCChhhHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcCChHHHHHHhhccC
Q 005881 86 CASRGDARSGKEIHGRMYRSGLELNSH--VSNCLINMYGKCGLLSSAQFVFDASL 138 (672)
Q Consensus 86 ~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~ 138 (672)
.+..|+++..+ .+.+.|..++.. .-.+.+...++.|+.+-+..+++...
T Consensus 16 A~~~g~~~~~~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 16 ATQYGIYERCR----ELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp HHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHcCChHHHH----HHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence 34556554433 334455443321 11223445556666666666665544
No 300
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=50.16 E-value=71 Score=29.05 Aligned_cols=18 Identities=0% Similarity=-0.140 Sum_probs=8.0
Q ss_pred HHHHhcCChHHHHHHhhc
Q 005881 119 NMYGKCGLLSSAQFVFDA 136 (672)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~ 136 (672)
...+..|+.+-+..+++.
T Consensus 67 ~~A~~~g~~~~v~~Ll~~ 84 (285)
T 3kea_A 67 HQAATLEDTKIVKILLFS 84 (285)
T ss_dssp HHHTTSSSCHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHC
Confidence 333444554444444443
No 301
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=50.10 E-value=1.2e+02 Score=26.19 Aligned_cols=113 Identities=10% Similarity=0.047 Sum_probs=52.2
Q ss_pred HHHHHHhcCCChhHHHHHhccCCC----CCcchHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCccc--HHHHHHHHhc
Q 005881 15 HLLLMYVKFSRINDAQKLFDEMPE----RNVISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNYYT--YVGAVSACAS 88 (672)
Q Consensus 15 ~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~ 88 (672)
..+...++.|+++....+++.-+. ++..-++. +...+..|+. ++++.+.+.|..++... -.+.+...+.
T Consensus 8 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 82 (231)
T 3aji_A 8 IMICNLAYSGKLDELKERILADKSLATRTDQDSRTA-LHWACSAGHT----EIVEFLLQLGVPVNDKDDAGWSPLHIAAS 82 (231)
T ss_dssp SHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCH-HHHHHHHTCH----HHHHHHHHTTCCSCCCCTTSCCHHHHHHH
T ss_pred chHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCH-HHHHHHcCcH----HHHHHHHHhCCCCCCcCCCCCCHHHHHHH
Confidence 345556677888888877765432 23322333 3333444543 34444445555444321 1123333344
Q ss_pred CCChhhHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCChHHHHHHhhc
Q 005881 89 RGDARSGKEIHGRMYRSGLELNSHV--SNCLINMYGKCGLLSSAQFVFDA 136 (672)
Q Consensus 89 ~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~ 136 (672)
.|+.+ +.+.+.+.|..++... -.+.+...+..|+.+-+..+++.
T Consensus 83 ~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 128 (231)
T 3aji_A 83 AGXDE----IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128 (231)
T ss_dssp HTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred cCHHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 45543 3444455554433211 11223334455666655555554
No 302
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=50.10 E-value=24 Score=31.62 Aligned_cols=53 Identities=6% Similarity=-0.093 Sum_probs=25.4
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCChhh-------HHHHHHHHh--ccCChHHHHHHHHHH
Q 005881 151 SYCQCGEHVHGLKIFLLSRKSGVAISEFS-------CASVLGACA--VLGNLKVGMQIHSLV 203 (672)
Q Consensus 151 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-------~~~ll~~~~--~~~~~~~a~~~~~~~ 203 (672)
..++.|+.+....+++.+.+.|..++... .+.+..++. +.|+.+.++.+++.-
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 33455666666666665555554444222 222322221 456666555555443
No 303
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=49.54 E-value=1.2e+02 Score=25.71 Aligned_cols=48 Identities=10% Similarity=0.061 Sum_probs=18.5
Q ss_pred CcHHHHHHHHHHhhcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 005881 210 FDKFVAMGLINLYAKCEKLDLASRVFSNIQLPDLTAWSALIGGYAQLG 257 (672)
Q Consensus 210 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 257 (672)
++..+....+.++.+.|+.+....+.+.+..++...-...+.++.+.+
T Consensus 124 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 171 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 334444444444444444333333333333334333333444444443
No 304
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=48.31 E-value=1.3e+02 Score=25.66 Aligned_cols=82 Identities=7% Similarity=0.024 Sum_probs=49.5
Q ss_pred HHHHHHHhhCC--CCCch---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHHHHHHHH
Q 005881 431 NDARKVFDHLS--SKNLV---SWNTMLVGYAQHGLGREALEIYSMMQENKIKPNDN-TFIGVLSACVHIGLVEEGWHYFN 504 (672)
Q Consensus 431 ~~A~~~~~~~~--~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~ 504 (672)
+++.+.|.... +.|+. .|-..+..+ ..+...++.++|..|..+|+--... -|......+...|++.+|.++|+
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444454443 34443 343333333 2344667888888888877766553 46666666777788888888887
Q ss_pred HhHHhhCCCC
Q 005881 505 SMIRDHGISP 514 (672)
Q Consensus 505 ~~~~~~~~~p 514 (672)
.-+ ..+-.|
T Consensus 140 ~GI-~~~A~P 148 (202)
T 3esl_A 140 LGA-ENNCRP 148 (202)
T ss_dssp HHH-HTTCBS
T ss_pred HHH-HcCCcc
Confidence 766 335555
No 305
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=48.11 E-value=62 Score=28.17 Aligned_cols=16 Identities=13% Similarity=-0.078 Sum_probs=7.3
Q ss_pred HHccCChHHHHHHHhh
Q 005881 323 YSKCELLEESLKTFDE 338 (672)
Q Consensus 323 ~~~~~~~~~a~~~~~~ 338 (672)
....|+...+..+.+.
T Consensus 217 A~~~~~~~~~~~l~~~ 232 (237)
T 3b7b_A 217 ASLNSQVWSALQMSKA 232 (237)
T ss_dssp SCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444445444444443
No 306
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=43.69 E-value=1e+02 Score=24.05 Aligned_cols=65 Identities=12% Similarity=0.160 Sum_probs=42.5
Q ss_pred HHHHHHHHccCChHHHHHHHhhCCCCCc---ccHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCChHH
Q 005881 317 NTVLDFYSKCELLEESLKTFDEMDEHDV---VSWNALIAGHLASCH--YGEAIELLKDMLFEGHCPNLYT 381 (672)
Q Consensus 317 ~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p~~~t 381 (672)
+.++.-|...|+.++|...++++..|.. .....+..++-+.+. .+....++..+...|+-+....
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 5677888888999999999998876522 223334444444432 3567778888887776554443
No 307
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=43.27 E-value=1.1e+02 Score=27.78 Aligned_cols=118 Identities=12% Similarity=0.057 Sum_probs=38.3
Q ss_pred chhhHHHHHHhcCCChhHHHHHhccCC--------------CCCcchHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCc
Q 005881 11 ITYNHLLLMYVKFSRINDAQKLFDEMP--------------ERNVISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNY 76 (672)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~~~--------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 76 (672)
....+.+...+..|+.++..++....+ ..+..-++. +...+..|+.+ +++.+.+.|..++.
T Consensus 13 ~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~-L~~Aa~~g~~~----~v~~Ll~~g~~~~~ 87 (285)
T 3d9h_A 13 GLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSP-MHEAAIHGHQL----SLRNLISQGWAVNI 87 (285)
T ss_dssp -----------------------------CCSEECCCCTTCSSSCCSCCH-HHHHHHTTCHH----HHHHHHHTTCCSCE
T ss_pred hHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCH-HHHHHHcCCHH----HHHHHHHCCCCCCC
Confidence 344556666777787777776433321 122222333 33445556654 34444445555543
Q ss_pred cc--HHHHHHHHhcCCChhhHHHHHHHHHHhCCCCChhHH--HHHHHHHHhcCChHHHHHHhhcc
Q 005881 77 YT--YVGAVSACASRGDARSGKEIHGRMYRSGLELNSHVS--NCLINMYGKCGLLSSAQFVFDAS 137 (672)
Q Consensus 77 ~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~ 137 (672)
.. -.+.+...+..|+.+- .+.+.+.|..++.... .+-+...+..|..+-+..+++..
T Consensus 88 ~~~~g~t~L~~A~~~g~~~~----v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 148 (285)
T 3d9h_A 88 ITADHVSPLHEACLGGHLSC----VKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHG 148 (285)
T ss_dssp ECTTCCCHHHHHHHTTCHHH----HHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred cCCCCCCHHHHHHHCCcHHH----HHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCC
Confidence 22 1233444445566543 3344445544432111 11223334455655555555543
No 308
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=42.09 E-value=1.7e+02 Score=25.17 Aligned_cols=152 Identities=12% Similarity=0.084 Sum_probs=68.5
Q ss_pred HHHHHHhcCCChhHHHHHhccCC-C---CCcchHHHHHHHHHcCCCchhHHHHHHHhHhCCC----CCCcccHHHHHHHH
Q 005881 15 HLLLMYVKFSRINDAQKLFDEMP-E---RNVISWSALISGFSQIGMPEVALNYFRLMVCCVL----EPNYYTYVGAVSAC 86 (672)
Q Consensus 15 ~ll~~~~~~g~~~~a~~~~~~~~-~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~p~~~~~~~ll~~~ 86 (672)
+.+..-++.|+.+.+..+++.-. . +|..-++. +...+..|+.+-+..+++.-..... ..+..-. +.+...
T Consensus 5 t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~-t~L~~A 82 (232)
T 2rfa_A 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETA-LHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQ-TALHIA 82 (232)
T ss_dssp CHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTC-CHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCH-HHHHHHcCCHHHHHHHHHcCchhccccccccCCCCc-CHHHHH
Confidence 34455567788888888877522 1 23322333 3444556666555444443211000 0111112 233444
Q ss_pred hcCCChhhHHHHHHHHHHhCCCCChhH---------------HHHHHHHHHhcCChHHHHHHhhccCCC---CcccHHHH
Q 005881 87 ASRGDARSGKEIHGRMYRSGLELNSHV---------------SNCLINMYGKCGLLSSAQFVFDASLER---NSISWVSL 148 (672)
Q Consensus 87 ~~~~~~~~a~~~~~~~~~~g~~~~~~~---------------~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l 148 (672)
+..|+.+ +.+.+.+.|..++... -.+.+...+..|+.+-+..+++..... |..-++.
T Consensus 83 ~~~~~~~----~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~- 157 (232)
T 2rfa_A 83 VINQNVN----LVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTV- 157 (232)
T ss_dssp HHTTCHH----HHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH-
T ss_pred HHcCCHH----HHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH-
Confidence 4556654 4444455565544321 122333344455655555555543322 2112222
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC
Q 005881 149 LSSYCQCGEHVHGLKIFLLSRKSGV 173 (672)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~m~~~g~ 173 (672)
+...+..|+.+-+..+++.+.+.|.
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCC
Confidence 2333445555555555555555544
No 309
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=41.02 E-value=1.7e+02 Score=24.90 Aligned_cols=126 Identities=11% Similarity=0.077 Sum_probs=56.4
Q ss_pred cccCCCCCcc---hhhHHHHHHhcCCChhHHHHHhccCCCCC---cchHHHHHHHHHcCCCchhHHHHHHHhHhCCC-CC
Q 005881 2 ITSGFHPNVI---TYNHLLLMYVKFSRINDAQKLFDEMPERN---VISWSALISGFSQIGMPEVALNYFRLMVCCVL-EP 74 (672)
Q Consensus 2 ~~~g~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p 74 (672)
++.|..++.. ...+.+...++.|+.+-+..+++.-..++ ..-++ .+...+..|+.+-+..+ .+.+. .+
T Consensus 11 l~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~L----l~~~~~~~ 85 (223)
T 2f8y_A 11 IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT-PLHAAVSADAQGVFQIL----IRNRATDL 85 (223)
T ss_dssp EETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHH----HHBTTSCT
T ss_pred HHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC-HHHHHHHcCCHHHHHHH----HHcCCCCc
Confidence 3455544432 23445555667788877777776543332 22222 23334455554433333 33221 11
Q ss_pred C---cccHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCChHHHHHHhhcc
Q 005881 75 N---YYTYVGAVSACASRGDARSGKEIHGRMYRSGLELNSHV--SNCLINMYGKCGLLSSAQFVFDAS 137 (672)
Q Consensus 75 ~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~ 137 (672)
+ ..-. +.+...+..|+.+ +.+.+.+.|..++... -.+.+...+..|+.+-+..+++..
T Consensus 86 ~~~~~~g~-t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 148 (223)
T 2f8y_A 86 DARMHDGT-TPLILAARLAVEG----MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 148 (223)
T ss_dssp TCCCTTCC-CHHHHHHHHTCHH----HHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred ccCCCCCC-cHHHHHHHhCcHH----HHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 1 1112 2233333445443 3444445555443221 112334445566666666666553
No 310
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=40.56 E-value=1.7e+02 Score=25.08 Aligned_cols=19 Identities=11% Similarity=0.023 Sum_probs=7.9
Q ss_pred ccCCchhHHHHHHHHHHhC
Q 005881 290 DVKETIGGRQLHSLIIKMG 308 (672)
Q Consensus 290 ~~~~~~~a~~~~~~~~~~~ 308 (672)
..++.+.+..+++.+.+.|
T Consensus 163 ~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 163 LQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp TCSCHHHHHHHHHHHHHTT
T ss_pred HcCChHHHHHHHHHHHhcC
Confidence 3344444444444444443
No 311
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=39.03 E-value=96 Score=21.54 Aligned_cols=62 Identities=11% Similarity=0.169 Sum_probs=42.8
Q ss_pred HHhHhCCCCCCcccHHHHHHHHhcCC-ChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 005881 65 RLMVCCVLEPNYYTYVGAVSACASRG-DARSGKEIHGRMYRSGLELNSHVSNCLINMYGKCGLL 127 (672)
Q Consensus 65 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 127 (672)
+.|.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|-...++.+.+.|-+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 34566777776543 45666666654 5667888888888877666777777777777777654
No 312
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=38.07 E-value=64 Score=30.63 Aligned_cols=14 Identities=0% Similarity=0.026 Sum_probs=6.4
Q ss_pred hcCCChhHHHHHHh
Q 005881 223 AKCEKLDLASRVFS 236 (672)
Q Consensus 223 ~~~g~~~~a~~~~~ 236 (672)
+..|+.+-+..+++
T Consensus 181 ~~~g~~~~v~~Ll~ 194 (364)
T 3ljn_A 181 MEFRNREALDLMMD 194 (364)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 34444444444444
No 313
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=37.95 E-value=92 Score=27.43 Aligned_cols=84 Identities=11% Similarity=0.045 Sum_probs=41.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCchHHHHHHHHH
Q 005881 452 LVGYAQHGLGREALEIYSMMQEN--KIKP----NDNTFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPRMDHIASVVHL 525 (672)
Q Consensus 452 i~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 525 (672)
+..+....++++|.+++++..+. ++++ +.......+..-.....-.-+..+.+.+. ..+++......+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~----~~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL----SSNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH----TCSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCHHHHHHHHHH
Confidence 45566666677776666655431 2221 11111222222222222222233333331 14455566666788
Q ss_pred hhccCChHHHHHHH
Q 005881 526 FACRGQTRRAYEFI 539 (672)
Q Consensus 526 ~~~~g~~~~A~~~~ 539 (672)
+.+-|+.++|.++|
T Consensus 101 L~rLg~~~~A~~lf 114 (235)
T 2d2s_A 101 MIKLGLPEQALDLF 114 (235)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHCCChhHHHHHH
Confidence 88888888888876
No 314
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=37.30 E-value=1.4e+02 Score=23.12 Aligned_cols=63 Identities=13% Similarity=0.250 Sum_probs=41.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCch---hHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCH
Q 005881 418 SALVDMYAKCGRLNDARKVFDHLSSKNLV---SWNTMLVGYAQHGL--GREALEIYSMMQENKIKPND 480 (672)
Q Consensus 418 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 480 (672)
+.++.-|...|+.++|.+.++++..|... ....+..++-+.++ .+.+..++..+...|+-+..
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 56778888889999999999998866332 33444444444432 35677777777777654433
No 315
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=37.23 E-value=1e+02 Score=24.26 Aligned_cols=62 Identities=11% Similarity=0.117 Sum_probs=43.1
Q ss_pred HhHhCCCCCCcccHHHHHHHHhcCC-ChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH
Q 005881 66 LMVCCVLEPNYYTYVGAVSACASRG-DARSGKEIHGRMYRSGLELNSHVSNCLINMYGKCGLLS 128 (672)
Q Consensus 66 ~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 128 (672)
.|++.|++++.. -..++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+.+.|-+.
T Consensus 8 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 456677776665 334566666666 67789999999998887777777666777777766543
No 316
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=36.42 E-value=1.1e+02 Score=26.84 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=12.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 005881 249 LIGGYAQLGKACEAIDLFVKMF 270 (672)
Q Consensus 249 li~~~~~~~~~~~a~~~~~~m~ 270 (672)
.+..+.+.|+.++|..+|=+..
T Consensus 97 ~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 97 GTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCChhHHHHHHHHHH
Confidence 3455555666666666655443
No 317
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=36.14 E-value=86 Score=25.33 Aligned_cols=65 Identities=12% Similarity=0.160 Sum_probs=42.0
Q ss_pred HHHHHHHHccCChHHHHHHHhhCCCCCc---ccHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCChHH
Q 005881 317 NTVLDFYSKCELLEESLKTFDEMDEHDV---VSWNALIAGHLASCH--YGEAIELLKDMLFEGHCPNLYT 381 (672)
Q Consensus 317 ~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p~~~t 381 (672)
+.++.-|...|+.++|...++++..|.. .....+..++-+.++ .+.+..++..+...|+-+....
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 5677888888999999999998876522 223334444444322 3457778888877776554443
No 318
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=36.07 E-value=1e+02 Score=28.46 Aligned_cols=65 Identities=14% Similarity=0.168 Sum_probs=43.2
Q ss_pred HHHHHHHHccCChHHHHHHHhhCCCCCc---ccHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCChHH
Q 005881 317 NTVLDFYSKCELLEESLKTFDEMDEHDV---VSWNALIAGHLASCH--YGEAIELLKDMLFEGHCPNLYT 381 (672)
Q Consensus 317 ~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p~~~t 381 (672)
+.++.-|...|+.++|...++++..|.. .....+..++-+.++ .+....++..+...|+-+....
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 5678888888999999999999987622 223333344444333 3456788888887776665444
No 319
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=35.86 E-value=1.1e+02 Score=24.46 Aligned_cols=63 Identities=16% Similarity=0.054 Sum_probs=43.2
Q ss_pred HHhHhCCCCCCcccHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH
Q 005881 65 RLMVCCVLEPNYYTYVGAVSACASRGDARSGKEIHGRMYRSGLELNSHVSNCLINMYGKCGLLS 128 (672)
Q Consensus 65 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 128 (672)
+.+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-+.
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 4466777776654 33456666666677889999999998887777777666777777777543
No 320
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=35.59 E-value=98 Score=24.68 Aligned_cols=62 Identities=5% Similarity=-0.033 Sum_probs=42.1
Q ss_pred HHhHhCCCCCCcccHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 005881 65 RLMVCCVLEPNYYTYVGAVSACASRGDARSGKEIHGRMYRSGLELNSHVSNCLINMYGKCGLL 127 (672)
Q Consensus 65 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 127 (672)
+.+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 11 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 3466677776655 3345555555566778888998888887666777666667777777654
No 321
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=35.54 E-value=37 Score=24.24 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHhCCccCCCCC
Q 005881 642 IDLHEVMNQLSVHLFDGGYVPDPIY 666 (672)
Q Consensus 642 ~~~~~~l~~~~~~~~~~g~~~~~~~ 666 (672)
.+++..+++...+++..|+.||-..
T Consensus 16 irIl~~ieekinELk~dG~ePDIiL 40 (103)
T 2pk8_A 16 IRILGEIEEKMNELKMDGFNPDIIL 40 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEE
Confidence 5667788888889999999999654
No 322
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=35.53 E-value=1.9e+02 Score=24.41 Aligned_cols=49 Identities=8% Similarity=0.140 Sum_probs=29.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHH
Q 005881 555 LSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAK 603 (672)
Q Consensus 555 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 603 (672)
+..|.+.|.+++|.+++++...-+|.+...-.-|..+-.+.+-+....+
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~lq 172 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQ 172 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHHHH
Confidence 4558889999999999999888877666665555555555444444433
No 323
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=35.48 E-value=1.1e+02 Score=24.60 Aligned_cols=63 Identities=11% Similarity=0.159 Sum_probs=45.2
Q ss_pred HHhHhCCCCCCcccHHHHHHHHhcCC-ChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH
Q 005881 65 RLMVCCVLEPNYYTYVGAVSACASRG-DARSGKEIHGRMYRSGLELNSHVSNCLINMYGKCGLLS 128 (672)
Q Consensus 65 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 128 (672)
+.|.+.|++++.. -..++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+.
T Consensus 6 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 4466778777665 334566666666 67789999999998887777777667777787777543
No 324
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=34.46 E-value=1.3e+02 Score=26.17 Aligned_cols=46 Identities=9% Similarity=-0.010 Sum_probs=26.8
Q ss_pred HHHHHHHHHhc--CCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 005881 566 LGRYAAEKILS--TDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 566 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 611 (672)
....+|..+.. ++-..+..|...+..+...|++.+|.++++.-.++
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34445555543 33445566666666677777777777766655443
No 325
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=33.81 E-value=2.6e+02 Score=24.95 Aligned_cols=18 Identities=6% Similarity=-0.211 Sum_probs=7.0
Q ss_pred CcHHHHHHHHHHhhcCCC
Q 005881 210 FDKFVAMGLINLYAKCEK 227 (672)
Q Consensus 210 ~~~~~~~~li~~~~~~g~ 227 (672)
++..+-...+.+..+.|+
T Consensus 140 ~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 140 KSTNVRRATAFAISVIND 157 (280)
T ss_dssp SCHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 444444444444444443
No 326
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=33.31 E-value=2.5e+02 Score=25.90 Aligned_cols=57 Identities=7% Similarity=0.049 Sum_probs=36.1
Q ss_pred HHHHHHHhhcCCChhHHHHHHhcCCCCCcc--hHHHHHHHHHhcCC--hhHHHHHHHHHHH
Q 005881 215 AMGLINLYAKCEKLDLASRVFSNIQLPDLT--AWSALIGGYAQLGK--ACEAIDLFVKMFS 271 (672)
Q Consensus 215 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~~~--~~~a~~~~~~m~~ 271 (672)
...++.-|...|+.++|...++++..|.-. ....+|......++ -+.+-.++..+..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~ 66 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG 66 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 467888898999999999999998766522 12233443333433 2335556666653
No 327
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=32.54 E-value=1.7e+02 Score=25.05 Aligned_cols=85 Identities=11% Similarity=0.063 Sum_probs=38.5
Q ss_pred HHHHHcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcC
Q 005881 48 ISGFSQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSACASRGDARSGKEIHGRMYRSGLELNSHV--SNCLINMYGKCG 125 (672)
Q Consensus 48 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g 125 (672)
+...++.|+.+....++..-...--.++..-.+ .+...+..|+.+ +++.+.+.|..++... -.+.+...+..|
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 84 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRT-ALHWACSAGHTE----IVEFLLQLGVPVNDKDDAGWSPLHIAASAG 84 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCC-HHHHHHHHTCHH----HHHHHHHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCC-HHHHHHHcCcHH----HHHHHHHhCCCCCCcCCCCCCHHHHHHHcC
Confidence 455566777777766666532211112222222 333334455544 3344445555443211 112233344556
Q ss_pred ChHHHHHHhhcc
Q 005881 126 LLSSAQFVFDAS 137 (672)
Q Consensus 126 ~~~~a~~~~~~~ 137 (672)
+.+-+..+++..
T Consensus 85 ~~~~v~~Ll~~g 96 (231)
T 3aji_A 85 XDEIVKALLVKG 96 (231)
T ss_dssp CHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 666555555543
No 328
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=31.23 E-value=2.4e+02 Score=23.89 Aligned_cols=47 Identities=13% Similarity=0.043 Sum_probs=34.4
Q ss_pred HHHHHHHHH---hcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCc
Q 005881 347 WNALIAGHL---ASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPA 394 (672)
Q Consensus 347 ~~~li~~~~---~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 394 (672)
+-.+|+++. +..+++.|+-.+-+|++.| .|....-..++.+....|.
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 334566654 5689999999999999999 7766666666666666553
No 329
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.88 E-value=1.5e+02 Score=29.81 Aligned_cols=58 Identities=12% Similarity=0.061 Sum_probs=32.2
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhhCC--CCch---HHHHHHHHHhhccCChHHHHHHHHh
Q 005881 482 TFIGVLSACVHIGLVEEGWHYFNSMIRDHGI--SPRM---DHIASVVHLFACRGQTRRAYEFIKS 541 (672)
Q Consensus 482 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (672)
.++.+++.|.+.+.++.|..+..+.. +.. .++. .-+-.++..+.-.+++.+|.+.+..
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~ 295 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIA 295 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 46667777777777777777766542 100 0111 1122345555667777777666654
No 330
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=30.71 E-value=1.7e+02 Score=27.00 Aligned_cols=60 Identities=18% Similarity=0.264 Sum_probs=43.7
Q ss_pred HHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 005881 538 FIKSSPIEPNK--VVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEK 611 (672)
Q Consensus 538 ~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 611 (672)
+|....+.|.. .+..+.+..+.+++++..|....++++++.|.. . ..++|.++.....+.
T Consensus 186 YFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~-~-------------~~~qArkil~~ce~~ 247 (320)
T 3mkr_B 186 YFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKP-E-------------VAQQTRKILSACEKN 247 (320)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCH-H-------------HHHHHHHHHHHHHHS
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH-H-------------HHHHHHHHHHHHhcC
Confidence 35555666643 356777888999999999999999999998841 1 345577777766543
No 331
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=30.47 E-value=1.5e+02 Score=24.17 Aligned_cols=70 Identities=9% Similarity=0.056 Sum_probs=49.9
Q ss_pred hhHHHHHHH-hHhCCCCCCcccHHHHHHHHhcCCChhhHHHHHHHHHHh--CCCCChhHHHHHHHHHHhcCChH
Q 005881 58 EVALNYFRL-MVCCVLEPNYYTYVGAVSACASRGDARSGKEIHGRMYRS--GLELNSHVSNCLINMYGKCGLLS 128 (672)
Q Consensus 58 ~~a~~~~~~-m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~ 128 (672)
+.+++-+.+ +++.|++++.. -..++..+...+..-.|.++++.+.+. +...+..|--.-++.+.+.|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 444544444 56678887654 456677777777888999999999988 77777776666677777777543
No 332
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=30.20 E-value=86 Score=27.70 Aligned_cols=90 Identities=8% Similarity=-0.035 Sum_probs=47.8
Q ss_pred HHHHHcCCCchhHHHHHHHhHhCCCCCCc-------ccHHHHHHHHhcC---CChhhHHHHHHHHHHhCCCC--------
Q 005881 48 ISGFSQIGMPEVALNYFRLMVCCVLEPNY-------YTYVGAVSACASR---GDARSGKEIHGRMYRSGLEL-------- 109 (672)
Q Consensus 48 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~g~~~-------- 109 (672)
+...++.|+.+.+..+++.+.+.|..++. .-. +.+...+.. |+.+-++.+++.-...+...
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~-t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 84 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGK-TCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT 84 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTB-CHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCC-CHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccc
Confidence 44456667777777777776666655543 222 233334444 77766666665444332100
Q ss_pred --ChhHHHHHHHHHHhcCChHHHHHHhhccCC
Q 005881 110 --NSHVSNCLINMYGKCGLLSSAQFVFDASLE 139 (672)
Q Consensus 110 --~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 139 (672)
|..- .+.+...+..|+.+-+..+++....
T Consensus 85 ~~d~~g-~t~L~~A~~~g~~~~v~~Ll~~ga~ 115 (256)
T 2etb_A 85 DEFYQG-HSALHIAIEKRSLQCVKLLVENGAD 115 (256)
T ss_dssp STTTTT-CCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cccccC-CCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 1112 2234445566777777777766443
No 333
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=30.01 E-value=1.3e+02 Score=28.35 Aligned_cols=16 Identities=6% Similarity=-0.014 Sum_probs=8.6
Q ss_pred HHhcCCHHHHHHHHhh
Q 005881 424 YAKCGRLNDARKVFDH 439 (672)
Q Consensus 424 ~~~~g~~~~A~~~~~~ 439 (672)
.+..|+.+-+..+++.
T Consensus 180 A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 180 AMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhc
Confidence 3445666555555554
No 334
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=28.98 E-value=1.5e+02 Score=23.92 Aligned_cols=63 Identities=13% Similarity=0.250 Sum_probs=41.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCch---hHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCH
Q 005881 418 SALVDMYAKCGRLNDARKVFDHLSSKNLV---SWNTMLVGYAQHGL--GREALEIYSMMQENKIKPND 480 (672)
Q Consensus 418 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 480 (672)
+.++.-|...|+.++|.+.++++..|... ....+..++-+.++ .+.+..++..+...|+-+..
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 56788888889999999999998766322 33444444444322 34567777777776654433
No 335
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.86 E-value=1.3e+02 Score=30.05 Aligned_cols=68 Identities=13% Similarity=0.107 Sum_probs=46.2
Q ss_pred hHHHHHHHHHhhccCChHHHHHHHHhCCCC----CCH--HHHHH-HHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 005881 516 MDHIASVVHLFACRGQTRRAYEFIKSSPIE----PNK--VVWRC-LLSGCKTHKDLVLGRYAAEKILSTDPEDTS 583 (672)
Q Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----p~~--~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 583 (672)
...++.++..|...+.++.|..++.+..+. ++. ..|.- +.......+++.+|.+.+..++...|.+..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 356778888888888999999988875321 111 12222 233466778888888888888888776543
No 336
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=28.75 E-value=4.5e+02 Score=28.99 Aligned_cols=33 Identities=6% Similarity=-0.090 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhc-CCCCCC
Q 005881 550 VWRCLLSGCKTHKDLVLGRYAAEKILS-TDPEDT 582 (672)
Q Consensus 550 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~ 582 (672)
-|..++..+.+++.++.+.+..+.+++ +.++++
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~ 932 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDE 932 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCc
Confidence 456666667777888888888887775 334443
No 337
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=28.65 E-value=1.1e+02 Score=24.36 Aligned_cols=64 Identities=11% Similarity=0.009 Sum_probs=43.1
Q ss_pred HHHHHhccCCCCCcchHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhcCCC
Q 005881 28 DAQKLFDEMPERNVISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSACASRGD 91 (672)
Q Consensus 28 ~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 91 (672)
.+.+.+.+..-+.+..-..++..+...+.+-.|.++++.+.+.+...+..|.-..|+.+...|-
T Consensus 8 ~~~~~l~~~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 8 EALETLKETGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 3444444433344455567788888778888999999999887766666666666666666553
No 338
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=28.44 E-value=3.5e+02 Score=24.83 Aligned_cols=247 Identities=10% Similarity=0.008 Sum_probs=119.1
Q ss_pred HHHHHhcCCChhHHHHHhccCCC----CCcchHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCccc--HHHHHHHHhcC
Q 005881 16 LLLMYVKFSRINDAQKLFDEMPE----RNVISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNYYT--YVGAVSACASR 89 (672)
Q Consensus 16 ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~ 89 (672)
.+...++.|+.+....++..... +|..-+ +.+..-+..|+.+ +++.+.+.|..++... -.+.+...+..
T Consensus 27 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~-t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 101 (351)
T 3utm_A 27 ELLEAARSGNEEKLMALLTPLNVNCHASDGRKS-TPLHLAAGYNRVR----IVQLLLQHGADVHAKDKGGLVPLHNACSY 101 (351)
T ss_dssp HHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCC-CHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred hHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCC-CHHHHHHHcCCHH----HHHHHHHcCCCCCccCCCCCcHHHHHHHC
Confidence 34455678999999999886432 222222 2344445566654 4445555666554432 12344555566
Q ss_pred CChhhHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCChHHHHHHhhccCCCCccc---HH------------------
Q 005881 90 GDARSGKEIHGRMYRSGLELNSHV--SNCLINMYGKCGLLSSAQFVFDASLERNSIS---WV------------------ 146 (672)
Q Consensus 90 ~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~------------------ 146 (672)
|+.+ +.+.+.+.|..++... -.+.+...+..|+.+-+..+++....++... .+
T Consensus 102 g~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~ 177 (351)
T 3utm_A 102 GHYE----VTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF 177 (351)
T ss_dssp TCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHH
T ss_pred CCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhh
Confidence 7655 4555566676554321 1133445567788888888887654432110 00
Q ss_pred --HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCcHHH--HHHHHHHh
Q 005881 147 --SLLSSYCQCGEHVHGLKIFLLSRKSGVAISEFSCASVLGACAVLGNLKVGMQIHSLVFKCALEFDKFV--AMGLINLY 222 (672)
Q Consensus 147 --~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~ 222 (672)
.-+...+..++.+....++..-.. ....+....+ .+...+..+. ..-.++.+.+.+.|..++... ..+.+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~t-~L~~A~~~~~-~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A 254 (351)
T 3utm_A 178 KGHSLLQAAREADLAKVKKTLALEII-NFKQPQSHET-ALHCAVASLH-PKRKQVAELLLRKGANVNEKNKDFMTPLHVA 254 (351)
T ss_dssp HHHHHHHHHHTTCHHHHHHHTTTCCT-TCCCTTTCCC-HHHHHHHCCS-TTHHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred cccHHHHHHHhccHHHHHHHHHhhcc-cccCCCCCCC-HHHHHHHHhC-ccHHHHHHHHHHcCCCcCCcCCCCCCHHHHH
Confidence 011122333444333333221110 0111111112 2222222221 122456666677776554221 12344556
Q ss_pred hcCCChhHHHHHHhcCCCCC---cchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 005881 223 AKCEKLDLASRVFSNIQLPD---LTAWSALIGGYAQLGKACEAIDLFVKMFSSGLMPSEV 279 (672)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 279 (672)
+..|+.+-+.-+++.-..++ ..-++.+ ...+..|+.+ +++.+.+.|..|+..
T Consensus 255 ~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L-~~A~~~~~~~----~v~~Ll~~gad~~~~ 309 (351)
T 3utm_A 255 AERAHNDVMEVLHKHGAKMNALDSLGQTAL-HRAALAGHLQ----TCRLLLSYGSDPSII 309 (351)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHHTCHH----HHHHHHHTTCCTTCC
T ss_pred HHcCCHHHHHHHHHCCCCCCCcCCCCCCHH-HHHHHcCcHH----HHHHHHHcCCCCCCc
Confidence 67888887777776554333 2223333 3334556554 444555667666543
No 339
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=28.43 E-value=2.5e+02 Score=23.16 Aligned_cols=78 Identities=15% Similarity=0.151 Sum_probs=51.3
Q ss_pred hcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC----------------CH-HHHHHHHH
Q 005881 426 KCGRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREALEIYSMMQENKIKP----------------ND-NTFIGVLS 488 (672)
Q Consensus 426 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----------------~~-~~~~~ll~ 488 (672)
-.|.+.++.-++.....-...-|.. -+|-+.+++.+|+..++.+++..+.- |. ..++.+..
T Consensus 45 yngEY~R~Lf~L~~lNT~Ts~YYk~--LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~ 122 (242)
T 3kae_A 45 LNGEYTRALFHLHKLNTCTSKYYES--LCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGD 122 (242)
T ss_dssp HTTCHHHHHHHHHTCCBHHHHHHHH--HHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHH
T ss_pred hcchHhHHHHHHHhcchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHH
Confidence 4578888877776544322223333 35667889999999998888554432 22 24556666
Q ss_pred HhhccCcHHHHHHHHHH
Q 005881 489 ACVHIGLVEEGWHYFNS 505 (672)
Q Consensus 489 ~~~~~g~~~~a~~~~~~ 505 (672)
.|...|+.++|+..+..
T Consensus 123 lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 123 LCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCHHHhhhHhhh
Confidence 77788888888888764
No 340
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=28.29 E-value=96 Score=24.74 Aligned_cols=61 Identities=10% Similarity=0.037 Sum_probs=39.8
Q ss_pred HHhHhCCCCCCcccHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 005881 65 RLMVCCVLEPNYYTYVGAVSACASRGDARSGKEIHGRMYRSGLELNSHVSNCLINMYGKCGLL 127 (672)
Q Consensus 65 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 127 (672)
+.+++.|++++.. -..++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 8 ~~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 3456677776664 233445555555 667888888888887766776666666777766644
No 341
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=28.21 E-value=71 Score=25.40 Aligned_cols=149 Identities=11% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhhccCCC---CcccHHHHHHHHHhcC
Q 005881 80 VGAVSACASRGDARSGKEIHGRMYRSGLELNSHVSNCLINMYGKCGLLSSAQFVFDASLER---NSISWVSLLSSYCQCG 156 (672)
Q Consensus 80 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g 156 (672)
.+.+...+..|+.+....+++. ....+......-.+.+.. +..|+.+-+..+++..... |..-++.+..+.....
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 80 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF 80 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred chHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Q ss_pred ChHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCChhHHHHH
Q 005881 157 EHVHGLKIFLLSRKSGVAIS--EFSCASVLGACAVLGNLKVGMQIHSLVFKCALEFDKFVAMGLINLYAKCEKLDLASRV 234 (672)
Q Consensus 157 ~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 234 (672)
.++++.+.+.|..++ ...-.+.+...+..|+.+.++.+++. ..+........+-+...+..|+.+-+.-+
T Consensus 81 -----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~g~t~l~~A~~~~~~~~v~~L 152 (156)
T 1bd8_A 81 -----LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE---SDLHRRDARGLTPLELALQRGAQDLVDIL 152 (156)
T ss_dssp -----HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT---SCTTCCCTTSCCHHHHHHHSCCHHHHHHH
T ss_pred -----HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc---cCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Q ss_pred HhcC
Q 005881 235 FSNI 238 (672)
Q Consensus 235 ~~~~ 238 (672)
++.+
T Consensus 153 l~~~ 156 (156)
T 1bd8_A 153 QGHM 156 (156)
T ss_dssp HTTC
T ss_pred HhhC
No 342
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=28.20 E-value=2.3e+02 Score=22.76 Aligned_cols=53 Identities=11% Similarity=0.186 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCc
Q 005881 462 REALEIYSMMQENKIKPNDN-TFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPR 515 (672)
Q Consensus 462 ~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 515 (672)
+++.++|..|..+|+--... -|......+...|++++|.++|+.-+ ..+-.|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi-~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI-QNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCccH
Confidence 34788888888887766654 46666667777888888888887766 3355553
No 343
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=27.23 E-value=1.9e+02 Score=24.41 Aligned_cols=46 Identities=17% Similarity=0.106 Sum_probs=34.3
Q ss_pred HHHHHHH---hcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCc
Q 005881 349 ALIAGHL---ASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPA 394 (672)
Q Consensus 349 ~li~~~~---~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 394 (672)
.+|+++. +..+++.|+-.+-+|++.|-.|....-..++-+....|.
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 3555554 568999999999999999988877766666666655553
No 344
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=27.07 E-value=80 Score=23.08 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=29.4
Q ss_pred CCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHH
Q 005881 428 GRLNDARKVFDHLSSKNLVSWNTMLVGYAQHGLGREAL 465 (672)
Q Consensus 428 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 465 (672)
...+.|.++++.+...+...|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887767655543
No 345
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=26.62 E-value=1.6e+02 Score=29.56 Aligned_cols=75 Identities=13% Similarity=0.132 Sum_probs=37.8
Q ss_pred HHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 005881 519 IASVVHLFACRGQTRRAYEFIKSS-PIEP-NKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYA 593 (672)
Q Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 593 (672)
..+|++...-...++.|..++.+. .+.| +...|+.|.-.....|+.-+|.-.|-+++......+.+..+|..++.
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 344455544455555565555432 2233 33355555555555555555555555555444335555555554443
No 346
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=26.38 E-value=1.1e+02 Score=32.13 Aligned_cols=64 Identities=5% Similarity=0.032 Sum_probs=49.0
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCCh
Q 005881 532 TRRAYEFIKSSPIEPNKVVWRCLLSGCKTHKDLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMW 598 (672)
Q Consensus 532 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 598 (672)
.+.|.++++-|+ ...............|++.-|.++.+.++..+|+|..+...++++|.+.|--
T Consensus 436 ~~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 436 EDSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 355667777776 3333334455567889999999999999999999999999999998887743
No 347
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=26.09 E-value=55 Score=23.97 Aligned_cols=34 Identities=9% Similarity=-0.119 Sum_probs=15.3
Q ss_pred CchhHHHHHHHhHhCCCCCCcccHHHHHHHHhcCCChh
Q 005881 56 MPEVALNYFRLMVCCVLEPNYYTYVGAVSACASRGDAR 93 (672)
Q Consensus 56 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 93 (672)
+.+.|.+++..+..+| +.+|..++.++...|...
T Consensus 52 ~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 52 RRDQARQLIIDLETRG----SQALPLFISCLEDTGQDM 85 (97)
T ss_dssp HHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHH
T ss_pred hHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHH
Confidence 3445555555544433 234444444444444433
No 348
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=25.99 E-value=1.7e+02 Score=26.07 Aligned_cols=89 Identities=2% Similarity=-0.103 Sum_probs=41.0
Q ss_pred HHHcCCCchhHHHHHHHhHhCCCCC-------CcccHHHHHHHHh--cCCChhhHHHHHHHHHHhC---------CC-CC
Q 005881 50 GFSQIGMPEVALNYFRLMVCCVLEP-------NYYTYVGAVSACA--SRGDARSGKEIHGRMYRSG---------LE-LN 110 (672)
Q Consensus 50 ~~~~~g~~~~a~~~~~~m~~~~~~p-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g---------~~-~~ 110 (672)
..++.|+.+.+..+++...+.+... +..-.+.|..++. +.|+.+-+..+++.-...+ .. .|
T Consensus 19 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d 98 (273)
T 2pnn_A 19 DAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSY 98 (273)
T ss_dssp HHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTT
T ss_pred HHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhccccccc
Confidence 3445666666666666555444322 2222333444433 2466665555555432211 00 11
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhhccCC
Q 005881 111 SHVSNCLINMYGKCGLLSSAQFVFDASLE 139 (672)
Q Consensus 111 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 139 (672)
..-.+ .+...+..|+.+-+..+++....
T Consensus 99 ~~g~t-pL~~A~~~g~~~~v~~Ll~~ga~ 126 (273)
T 2pnn_A 99 YKGQT-ALHIAIERRNMTLVTLLVENGAD 126 (273)
T ss_dssp TTTCC-HHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCC-HHHHHHHcCCHHHHHHHHHCCCC
Confidence 12222 23334456677666666665443
No 349
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=24.77 E-value=63 Score=28.64 Aligned_cols=54 Identities=13% Similarity=0.062 Sum_probs=33.6
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHhCCCCCh-------hHHHHHHHHHHhc---CChHHHHHHhhc
Q 005881 82 AVSACASRGDARSGKEIHGRMYRSGLELNS-------HVSNCLINMYGKC---GLLSSAQFVFDA 136 (672)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~---g~~~~a~~~~~~ 136 (672)
.+...+..|+.+....+++.+.+.|..++. .-.+.| ...+.. |+.+-+..+++.
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L-~~A~~~~~~g~~~~v~~Ll~~ 68 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCL-MKAVLNLQDGVNACIMPLLQI 68 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHH-HHHHHTCBTTBCTTHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHH-HHHHHccccchHHHHHHHHhc
Confidence 455566778888888888888888865543 222333 333444 666666666653
No 350
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=24.61 E-value=3.8e+02 Score=23.95 Aligned_cols=117 Identities=8% Similarity=-0.050 Sum_probs=62.3
Q ss_pred hHHHHHHhcCCChhHHHHHhccCCCC---CcchHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCcccH--HHHHHHHhc
Q 005881 14 NHLLLMYVKFSRINDAQKLFDEMPER---NVISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNYYTY--VGAVSACAS 88 (672)
Q Consensus 14 ~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--~~ll~~~~~ 88 (672)
.+.+...+..|+.+-+..+++.-..+ |..-++. +...+..|+.+ +++.+.+.|..++.... .+.+...+.
T Consensus 60 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~g~~~----~v~~Ll~~ga~~~~~~~~g~t~L~~A~~ 134 (285)
T 3d9h_A 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSP-LHEACLGGHLS----CVKILLKHGAQVNGVTADWHTPLFNACV 134 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCH-HHHHHHTTCHH----HHHHHHHTTCCSSCCCTTCCCHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH-HHHHHHCCcHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence 34556667889998888888764332 2222333 33445566654 44444555655543321 133444445
Q ss_pred CCChhhHHHHHHHHHHhCCCCChhH-HHHHHHHHHhcCChHHHHHHhhccCC
Q 005881 89 RGDARSGKEIHGRMYRSGLELNSHV-SNCLINMYGKCGLLSSAQFVFDASLE 139 (672)
Q Consensus 89 ~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~ 139 (672)
.|+.+ +.+.+.+.|..++... ..+.+...+..|..+-+..+++....
T Consensus 135 ~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 182 (285)
T 3d9h_A 135 SGSWD----CVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGN 182 (285)
T ss_dssp HTCHH----HHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred cCHHH----HHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 56654 4455556665543221 22344455666777777777765443
No 351
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=24.56 E-value=1.2e+02 Score=20.96 Aligned_cols=38 Identities=13% Similarity=0.295 Sum_probs=23.9
Q ss_pred HHHhccCCC--CCcchHHHHHHHHHcCCCchhHHHHHHHh
Q 005881 30 QKLFDEMPE--RNVISWSALISGFSQIGMPEVALNYFRLM 67 (672)
Q Consensus 30 ~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m 67 (672)
..++++++. |++.||+-+....-+..-..+++.+.+++
T Consensus 23 ~~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 23 KQLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp HHHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 456666665 67777777766665555555665555543
No 352
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=24.16 E-value=3.6e+02 Score=25.21 Aligned_cols=91 Identities=15% Similarity=0.194 Sum_probs=48.9
Q ss_pred HHHHHHHHccCChHHHHHHHhhCCCCCc---ccHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCChHH---HHHHHHHH
Q 005881 317 NTVLDFYSKCELLEESLKTFDEMDEHDV---VSWNALIAGHLASC-HYGEAIELLKDMLFEGHCPNLYT---YSNILNIS 389 (672)
Q Consensus 317 ~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~~~ 389 (672)
..++.-|...|+.++|...++++..|.. .....+..++-+.. ..+.+..++..+.+.|+-+.... |..++..+
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~l 94 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELA 94 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhC
Confidence 5677888888999999999999876542 11112222222211 23456667777776665544332 33333333
Q ss_pred cCcC-chHHHHHHHHHHHh
Q 005881 390 SDIP-AIEWGKQTHCCIVK 407 (672)
Q Consensus 390 ~~~~-~~~~a~~~~~~~~~ 407 (672)
.... +...|...+..+..
T Consensus 95 ~Dl~lDiP~a~~~La~~v~ 113 (339)
T 1ug3_A 95 EDMEIDIPHVWLYLAELVT 113 (339)
T ss_dssp HHHTTTCTTHHHHHHHHHG
T ss_pred hHhhcCccchHHHHHHHHH
Confidence 2222 44555555555543
No 353
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=23.89 E-value=1.4e+02 Score=26.56 Aligned_cols=16 Identities=13% Similarity=0.148 Sum_probs=8.0
Q ss_pred hcCCChhHHHHHHhcC
Q 005881 223 AKCEKLDLASRVFSNI 238 (672)
Q Consensus 223 ~~~g~~~~a~~~~~~~ 238 (672)
+..|+.+-+..+++.-
T Consensus 109 ~~~g~~~~v~~Ll~~g 124 (273)
T 2pnn_A 109 IERRNMTLVTLLVENG 124 (273)
T ss_dssp HHTTCHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHCC
Confidence 3445555555555443
No 354
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=23.53 E-value=3.5e+02 Score=23.15 Aligned_cols=50 Identities=16% Similarity=0.214 Sum_probs=36.8
Q ss_pred ccHHHHHHHHH---hcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHcCcCc
Q 005881 345 VSWNALIAGHL---ASCHYGEAIELLKDMLFEGHCPNLYTYSNILNISSDIPA 394 (672)
Q Consensus 345 ~~~~~li~~~~---~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 394 (672)
..+-.+|+++. +..+++.|+-.+-+|++.|-.|....-..++-+....|.
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGl 85 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGL 85 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 34445666664 468999999999999999988877777767666665553
No 355
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=23.35 E-value=2.8e+02 Score=21.95 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=12.0
Q ss_pred HHHHhcCCChhHHHHHhcc
Q 005881 17 LLMYVKFSRINDAQKLFDE 35 (672)
Q Consensus 17 l~~~~~~g~~~~a~~~~~~ 35 (672)
+...++.|+.+.+..+++.
T Consensus 12 l~~A~~~g~~~~v~~ll~~ 30 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCTV 30 (165)
T ss_dssp HHHHHHHTCHHHHHHHCCT
T ss_pred HHHHHHhCCHHHHHHHHHc
Confidence 3444566777777777664
No 356
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=22.98 E-value=3.1e+02 Score=22.39 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCc
Q 005881 463 EALEIYSMMQENKIKPNDN-TFIGVLSACVHIGLVEEGWHYFNSMIRDHGISPR 515 (672)
Q Consensus 463 ~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 515 (672)
.+.++|..|..+|+--... .|......+-..|++.+|.++|+.-+ ..+..|-
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi-~~~A~P~ 130 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGI-QQKAEPL 130 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCBSH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCcH
Confidence 3667888888887766654 46666666777788888888887766 3355664
No 357
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=22.57 E-value=5e+02 Score=28.65 Aligned_cols=52 Identities=12% Similarity=0.102 Sum_probs=38.1
Q ss_pred HHHHHhcCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCchhHHHHHHHhH
Q 005881 16 LLLMYVKFSRINDAQKLFDEMPERNVISWSALISGFSQIGMPEVALNYFRLMV 68 (672)
Q Consensus 16 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 68 (672)
++..+...|..+-|.++...++.....+| .+.++|...|++++|...|++.-
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~t~~~~y-v~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNSDPIAVY-LKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCSSHHHHH-HHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCCChHHHH-HHHHHHHHcCCHHHHHHHHHHHh
Confidence 66677778888888887777776323333 46678888999999999998754
No 358
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.81 E-value=1.5e+02 Score=23.66 Aligned_cols=63 Identities=5% Similarity=-0.123 Sum_probs=41.6
Q ss_pred HHHHhccCCCCCcchHHHHHHHHHcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhcCCC
Q 005881 29 AQKLFDEMPERNVISWSALISGFSQIGMPEVALNYFRLMVCCVLEPNYYTYVGAVSACASRGD 91 (672)
Q Consensus 29 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 91 (672)
+.+.+....-+.+..-..++..+...+.+-.|.++++.+.+.+...+..|.-..|+.+...|-
T Consensus 14 ~~~~l~~~g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 14 LRMSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHHHCC--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 344444433344445567788888888889999999999887766666666666666666553
No 359
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.67 E-value=1.3e+02 Score=23.41 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=23.2
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 005881 82 AVSACASRGDARSGKEIHGRMYRSGLELNSHVSNCLINMYGKCGLL 127 (672)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 127 (672)
++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 3333333444455555666555555444555544455555555543
No 360
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=21.21 E-value=73 Score=20.74 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=20.2
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 005881 571 AEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVRKIMKEKSL 613 (672)
Q Consensus 571 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 613 (672)
.+.+.++.| +......-.-+-...|+.+.|...+-.|.....
T Consensus 13 l~~L~emFP-~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~ 54 (59)
T 1wgl_A 13 LKAIQDMFP-NMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPS 54 (59)
T ss_dssp HHHHHHHCS-SSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCC
T ss_pred HHHHHHHCC-CCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCC
Confidence 344445555 222222222233445666666666666654433
No 361
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=21.19 E-value=3.5e+02 Score=22.31 Aligned_cols=56 Identities=14% Similarity=0.081 Sum_probs=27.2
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCc
Q 005881 152 YCQCGEHVHGLKIFLLSRKSGVAISE-FSCASVLGACAVLGNLKVGMQIHSLVFKCALEFD 211 (672)
Q Consensus 152 ~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 211 (672)
.++.|+.+....++.. ++.... ..-.+.|...+..++.+.-.++.+.+++.|..++
T Consensus 13 Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 3556777665555432 221111 1112344444455555555556666666666554
No 362
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=21.00 E-value=1.3e+02 Score=24.57 Aligned_cols=64 Identities=6% Similarity=-0.043 Sum_probs=43.5
Q ss_pred HHHHhccCCCCCcchHHHHHHHHHcCCCchhHHHHHHHhHhC--CCCCCcccHHHHHHHHhcCCCh
Q 005881 29 AQKLFDEMPERNVISWSALISGFSQIGMPEVALNYFRLMVCC--VLEPNYYTYVGAVSACASRGDA 92 (672)
Q Consensus 29 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~ 92 (672)
+.+.+.+-.-+-+..-..++..+...+.+-.|.++++.+.+. +...+..|.-..|..+...|-+
T Consensus 20 ~~~~L~~~g~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 20 FKKILRQGGLKYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 333443333345555667888888888899999999999887 6566666655566666666643
No 363
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A*
Probab=20.99 E-value=4.2e+02 Score=28.89 Aligned_cols=107 Identities=8% Similarity=-0.001 Sum_probs=63.7
Q ss_pred CcHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhccCC---hHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-------
Q 005881 494 GLVEEGWHYFNSMIRDHGISPRMDHIASVVHLFACRGQ---TRRAYEFIKSSPIEP-NKVVWRCLLSGCKTHK------- 562 (672)
Q Consensus 494 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g------- 562 (672)
+.-++++..|..-. . -+.-++.....+-+.... ++...++++.-.+.+ |+.-..+|+.++...+
T Consensus 747 ~~~~~~l~~f~~~~---~--~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~h~~f~~~npn~~r~l~~~f~~~n~~~fh~~ 821 (891)
T 3b34_A 747 PCRDALMQEYDDKW---H--QNGLVMDKWFILQATSPAANVLETVRGLLQHRSFTMSNPNRIRSLIGAFAGSNPAAFHAE 821 (891)
T ss_dssp TTHHHHHHHHHHHH---T--TCHHHHHHHHHHHHTCCCTTHHHHHHHHTTCTTCCTTCHHHHHHHHHHHHHHCHHHHTCT
T ss_pred chHHHHHHHHHHHh---c--cCcHHHHHHHHHHhCCCCccHHHHHHHHhcCCCCCCCCCcHHHHHHHHHhccCccccCCC
Confidence 35556666665433 2 344444444333333332 333333443333333 6677788888875422
Q ss_pred CHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 005881 563 DLVLGRYAAEKILSTDPEDTSAHIMLSNVYAEANMWDETAKVR 605 (672)
Q Consensus 563 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 605 (672)
+-..=.-+.+.++++++-||..-..|+..+.+-.++++..+..
T Consensus 822 ~g~gy~~~~~~~~~l~~~np~~a~r~~~~~~~~~~~~~~~~~~ 864 (891)
T 3b34_A 822 DGSGYLFLVEMLTDLNSRNPQVASRLIEPLIRLKRYDAKRQEK 864 (891)
T ss_dssp TSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTGGGSCHHHHHH
T ss_pred CCcHHHHHHHHHHHhcCcCHHHHHHHHHHHhhhhhcCHHHHHH
Confidence 2222344567778999999999999999999999998887744
Done!