Query 005882
Match_columns 672
No_of_seqs 209 out of 747
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 10:00:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005882.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005882hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1juq_A ADP-ribosylation factor 100.0 3.2E-42 1.1E-46 334.1 17.5 149 2-155 14-169 (171)
2 1x5b_A Signal transducing adap 100.0 4.7E-42 1.6E-46 330.6 17.8 140 2-142 16-155 (163)
3 3ldz_A STAM-1, signal transduc 100.0 4.3E-42 1.5E-46 323.1 16.2 135 2-138 6-140 (140)
4 1mhq_A ADP-ribosylation factor 100.0 6.7E-42 2.3E-46 324.9 16.5 136 2-141 2-142 (148)
5 3g2s_A C-terminal fragment of 100.0 1E-40 3.5E-45 317.3 17.0 131 2-136 12-147 (149)
6 1elk_A Target of MYB1; superhe 100.0 2.5E-40 8.5E-45 316.6 17.1 137 2-139 17-157 (157)
7 3zyq_A Hepatocyte growth facto 100.0 1.7E-39 5.9E-44 327.1 17.1 146 2-149 9-154 (226)
8 3rru_A TOM1L1 protein; structu 100.0 3.8E-39 1.3E-43 307.4 12.3 132 2-134 17-152 (152)
9 1dvp_A HRS, hepatocyte growth 100.0 3.9E-37 1.3E-41 307.9 18.8 146 2-149 6-151 (220)
10 1oxz_A ADP-ribosylation factor 99.9 5E-24 1.7E-28 209.0 3.9 132 157-290 44-183 (186)
11 1o3x_A ADP-ribosylation factor 99.8 3.7E-21 1.3E-25 181.2 9.0 113 156-268 18-138 (140)
12 1naf_A ADP-ribosylation factor 99.8 1.9E-21 6.4E-26 186.4 5.8 114 157-270 28-149 (158)
13 1wrd_A TOM1, target of MYB pro 99.8 1.1E-20 3.7E-25 169.6 8.2 90 179-268 5-98 (103)
14 1wr6_A ADP-ribosylation factor 99.8 6.9E-20 2.3E-24 166.4 7.3 90 181-270 2-96 (111)
15 1sz9_A PCF11 protein; RNA poly 98.1 1.5E-05 5.1E-10 75.1 11.6 98 17-116 22-119 (144)
16 1vdy_A Hypothetical protein (R 98.1 7.3E-06 2.5E-10 77.2 8.9 104 3-109 13-128 (140)
17 1xgw_A Epsin 4; ENTH, enthopro 97.7 0.00028 9.6E-09 68.8 12.8 107 2-111 35-152 (176)
18 1inz_A EPS15-interacting porte 97.6 0.00031 1.1E-08 66.7 10.4 108 2-110 24-139 (148)
19 1eyh_A Epsin; superhelix of he 97.4 0.00047 1.6E-08 65.1 8.5 106 2-111 6-122 (144)
20 3onk_A Epsin-3, ENT3; helix, p 97.2 0.001 3.5E-08 63.3 9.0 106 2-111 12-129 (150)
21 4flb_A Regulation of nuclear P 96.8 0.0028 9.6E-08 58.0 7.9 93 19-112 21-113 (132)
22 3d9j_A RNA-binding protein 16; 96.4 0.0056 1.9E-07 57.5 7.2 91 21-112 25-120 (145)
23 2pjw_H Uncharacterized protein 96.1 0.011 3.7E-07 51.7 6.4 71 193-265 9-85 (88)
24 4fu3_A Regulation of nuclear P 95.7 0.0055 1.9E-07 56.0 3.4 91 20-112 21-114 (135)
25 2qk2_A LP04448P; mini spindles 94.9 0.16 5.4E-06 49.4 11.2 95 16-113 26-129 (242)
26 2pjw_V Vacuolar protein sortin 94.8 0.11 3.7E-06 45.6 8.4 69 195-265 10-83 (91)
27 1hx8_A Synapse-enriched clathr 94.4 0.13 4.4E-06 53.6 9.5 74 2-75 24-97 (299)
28 3zyl_A Phosphatidylinositol-bi 94.2 0.15 5.1E-06 52.6 9.3 71 2-72 29-99 (271)
29 2km4_A Regulator of TY1 transp 94.1 0.24 8.2E-06 46.1 9.6 91 21-112 21-116 (142)
30 3zym_A Phosphatidylinositol-bi 93.8 0.2 6.7E-06 52.6 9.5 71 2-72 29-99 (310)
31 2qk1_A Protein STU2; STU2P, XM 92.5 0.84 2.9E-05 45.5 11.5 94 36-133 144-240 (249)
32 3b2a_A TON_1937, putative unch 92.5 0.26 8.9E-06 50.5 7.7 93 36-130 31-123 (265)
33 2qk1_A Protein STU2; STU2P, XM 91.4 0.98 3.3E-05 45.1 10.5 98 15-114 26-136 (249)
34 3clj_A Protein NRD1; CTD-inter 88.8 1 3.5E-05 43.1 7.6 100 16-115 19-135 (157)
35 4ffb_C Protein STU2; tubulin f 88.6 0.79 2.7E-05 45.8 7.1 74 36-113 137-214 (278)
36 4hxt_A De novo protein OR329; 88.0 1.6 5.3E-05 41.2 8.5 106 3-111 5-115 (252)
37 2qk2_A LP04448P; mini spindles 87.7 5.6 0.00019 38.3 12.4 77 35-114 130-208 (242)
38 4ffb_C Protein STU2; tubulin f 87.4 1.9 6.7E-05 42.9 9.2 74 39-113 56-134 (278)
39 4db6_A Armadillo repeat protei 83.4 3.7 0.00013 38.0 8.4 70 39-110 139-208 (210)
40 3dad_A FH1/FH2 domain-containi 82.2 25 0.00084 37.5 14.9 179 22-243 139-325 (339)
41 1xqr_A HSPBP1 protein; armadil 81.9 3.4 0.00012 42.5 8.1 89 21-111 145-238 (296)
42 4hxt_A De novo protein OR329; 80.9 8.5 0.00029 36.0 10.0 74 39-114 171-244 (252)
43 4db6_A Armadillo repeat protei 77.8 10 0.00035 34.9 9.4 71 38-110 54-124 (210)
44 3dad_A FH1/FH2 domain-containi 77.5 11 0.00038 40.1 10.4 95 38-136 202-307 (339)
45 2jdq_A Importin alpha-1 subuni 77.3 6.8 0.00023 40.3 8.7 73 38-111 107-179 (450)
46 2of3_A ZYG-9; multifunctional 77.1 12 0.00042 38.3 10.4 95 17-113 58-163 (266)
47 1ibr_B P95, importin beta-1 su 77.1 14 0.00047 37.9 11.0 92 36-130 364-456 (462)
48 4b8j_A Importin subunit alpha- 72.1 12 0.0004 40.1 9.3 73 39-112 161-233 (528)
49 4db8_A Armadillo-repeat protei 71.8 10 0.00034 36.0 7.8 70 39-110 97-166 (252)
50 4db8_A Armadillo-repeat protei 69.6 10 0.00035 36.0 7.3 70 39-110 55-124 (252)
51 3ltj_A Alpharep-4; protein eng 68.6 24 0.00081 32.4 9.4 78 17-109 26-103 (201)
52 3ltm_A Alpha-REP4; protein eng 68.3 14 0.00046 34.4 7.7 80 15-109 91-170 (211)
53 1xqr_A HSPBP1 protein; armadil 67.2 9.6 0.00033 39.1 6.9 71 39-110 82-153 (296)
54 3ltj_A Alpharep-4; protein eng 67.1 23 0.00079 32.5 9.0 81 15-110 86-166 (201)
55 1te4_A Conserved protein MTH18 66.3 23 0.00079 30.8 8.4 56 37-105 72-127 (131)
56 3ltm_A Alpha-REP4; protein eng 66.1 26 0.00087 32.5 9.2 79 16-109 30-108 (211)
57 1hu3_A EIF4GII; heat repeat, t 65.2 24 0.00082 35.5 9.3 92 19-114 147-242 (260)
58 3nmw_A APC variant protein; AR 64.7 15 0.00051 38.6 8.0 71 39-109 128-198 (354)
59 1ibr_B P95, importin beta-1 su 64.5 23 0.0008 36.2 9.3 75 35-111 125-203 (462)
60 2of3_A ZYG-9; multifunctional 64.1 23 0.00079 36.2 9.0 72 36-114 165-239 (266)
61 2jdq_A Importin alpha-1 subuni 63.5 25 0.00087 36.0 9.4 73 38-111 318-390 (450)
62 4b8j_A Importin subunit alpha- 62.3 15 0.00051 39.3 7.6 74 37-110 73-146 (528)
63 2z6h_A Catenin beta-1, beta-ca 62.1 24 0.00083 39.1 9.5 71 39-111 99-169 (644)
64 3tt9_A Plakophilin-2; cell adh 61.6 20 0.00069 35.7 7.9 71 39-110 53-123 (233)
65 2bpt_A Importin beta-1 subunit 60.8 35 0.0012 38.3 10.5 91 37-132 638-730 (861)
66 4fdd_A Transportin-1; heat rep 60.4 69 0.0024 36.5 13.1 57 34-92 438-494 (852)
67 1qgr_A Protein (importin beta 60.1 48 0.0016 37.2 11.6 77 36-115 364-441 (876)
68 1wa5_B Importin alpha subunit; 60.1 22 0.00077 38.1 8.5 73 39-112 384-458 (530)
69 1b3u_A Protein (protein phosph 58.8 12 0.00041 39.8 6.1 68 37-109 518-585 (588)
70 2z6g_A B-catenin; FULL-length, 58.7 20 0.00067 41.4 8.2 73 36-109 148-220 (780)
71 2bpt_A Importin beta-1 subunit 56.5 1.2E+02 0.004 34.0 13.9 88 24-114 437-532 (861)
72 1w63_A Adapter-related protein 56.3 20 0.0007 40.0 7.6 80 22-110 91-170 (618)
73 2z6g_A B-catenin; FULL-length, 56.3 28 0.00095 40.1 8.9 71 39-111 235-305 (780)
74 1b3u_A Protein (protein phosph 55.8 48 0.0016 35.1 10.1 73 37-114 440-512 (588)
75 1wa5_B Importin alpha subunit; 55.7 18 0.00061 38.8 6.8 70 39-109 429-508 (530)
76 1jdh_A Beta-catenin; beta-cate 54.8 38 0.0013 35.6 9.1 71 39-111 102-172 (529)
77 1w63_A Adapter-related protein 54.8 36 0.0012 38.0 9.3 57 17-73 289-348 (618)
78 3f1i_S STAM-1, signal transduc 54.5 47 0.0016 28.3 7.6 68 195-264 6-76 (77)
79 2z6h_A Catenin beta-1, beta-ca 54.4 35 0.0012 37.8 9.1 73 36-109 12-84 (644)
80 1wjt_A Transcription elongatio 53.8 24 0.00083 31.2 6.2 22 94-115 67-88 (103)
81 4fdd_A Transportin-1; heat rep 53.1 43 0.0015 38.3 9.8 75 38-115 629-703 (852)
82 1jdh_A Beta-catenin; beta-cate 52.9 38 0.0013 35.6 8.7 73 36-109 15-87 (529)
83 3l6x_A Catenin delta-1; cateni 52.2 20 0.00068 40.6 6.7 69 39-107 91-159 (584)
84 1qgr_A Protein (importin beta 52.2 1.2E+02 0.0041 34.0 13.0 97 15-114 376-482 (876)
85 2vgl_B AP-2 complex subunit be 51.9 39 0.0013 37.3 9.0 87 19-107 139-227 (591)
86 3nmz_A APC variant protein; pr 51.3 29 0.00099 37.9 7.6 73 38-110 243-315 (458)
87 1xm9_A Plakophilin 1; armadill 50.9 53 0.0018 35.0 9.6 73 38-111 44-116 (457)
88 3ul1_B Importin subunit alpha- 50.8 25 0.00086 38.0 7.0 70 39-109 402-476 (510)
89 2vgl_B AP-2 complex subunit be 50.6 39 0.0013 37.3 8.7 75 32-111 115-189 (591)
90 1oyz_A Hypothetical protein YI 47.7 52 0.0018 31.8 8.1 21 226-246 254-274 (280)
91 1oyz_A Hypothetical protein YI 47.4 59 0.002 31.4 8.5 57 36-107 190-246 (280)
92 2lp4_A Chemotaxis protein CHEA 47.2 85 0.0029 30.7 9.7 74 188-261 12-107 (225)
93 3kyj_A CHEA3, putative histidi 46.9 94 0.0032 28.6 9.3 73 189-261 17-111 (144)
94 3grl_A General vesicular trans 46.8 57 0.002 37.5 9.3 74 37-111 121-195 (651)
95 2vgl_A Adaptor protein complex 46.7 45 0.0015 37.5 8.5 35 36-70 327-361 (621)
96 3tpo_A Importin subunit alpha- 45.1 23 0.00077 38.4 5.6 70 39-109 421-495 (529)
97 3tpo_A Importin subunit alpha- 45.1 56 0.0019 35.3 8.7 72 38-109 76-147 (529)
98 2vso_E Eukaryotic initiation f 43.9 85 0.0029 31.8 9.3 85 21-109 176-277 (284)
99 1o5h_A Formiminotetrahydrofola 42.7 56 0.0019 32.5 7.4 39 197-235 48-91 (214)
100 3f1i_H Hepatocyte growth facto 41.6 78 0.0027 28.0 7.2 66 189-256 6-75 (98)
101 3tjz_B Coatomer subunit gamma; 41.4 19 0.00065 38.3 4.1 64 6-69 144-207 (355)
102 1i5n_A Chemotaxis protein CHEA 40.8 1.8E+02 0.0062 26.5 10.3 74 188-261 12-107 (146)
103 2ii0_A SOS-1, SON of sevenless 40.7 2.3E+02 0.0077 31.0 12.7 85 2-92 47-161 (490)
104 3tt9_A Plakophilin-2; cell adh 40.0 54 0.0019 32.6 7.0 71 39-111 9-81 (233)
105 4ani_A Protein GRPE; chaperone 39.9 86 0.0029 31.2 8.3 65 188-257 60-127 (213)
106 1xm9_A Plakophilin 1; armadill 39.9 47 0.0016 35.5 6.9 70 40-111 4-73 (457)
107 1u6g_C TIP120 protein, CAND1; 39.7 1.4E+02 0.0049 35.5 11.7 75 36-113 131-206 (1230)
108 3ul1_B Importin subunit alpha- 39.1 1E+02 0.0034 33.2 9.5 70 39-109 359-428 (510)
109 2olt_A Hypothetical protein; s 38.4 1.3E+02 0.0043 29.0 9.2 71 189-262 23-103 (227)
110 2vgl_A Adaptor protein complex 36.8 1.1E+02 0.0037 34.4 9.6 78 22-109 504-587 (621)
111 3ayh_A DNA-directed RNA polyme 36.6 38 0.0013 31.2 4.8 55 22-76 56-122 (136)
112 1fad_A Protein (FADD protein); 36.5 27 0.00092 29.9 3.6 36 95-134 50-85 (99)
113 2o71_A Death domain-containing 34.9 31 0.001 31.0 3.8 70 62-135 27-96 (115)
114 1te4_A Conserved protein MTH18 34.6 79 0.0027 27.3 6.4 57 40-109 44-100 (131)
115 3b2a_A TON_1937, putative unch 34.5 1.1E+02 0.0039 31.3 8.2 70 36-110 148-217 (265)
116 2of5_A Death domain-containing 34.3 34 0.0012 30.7 4.0 70 62-135 27-96 (114)
117 1u6g_C TIP120 protein, CAND1; 33.9 1.2E+02 0.004 36.3 9.7 73 39-113 435-508 (1230)
118 3ezq_B Protein FADD; apoptosis 32.4 47 0.0016 30.1 4.7 69 61-134 8-77 (122)
119 2x1g_F Cadmus; transport prote 32.2 97 0.0033 35.9 8.4 86 24-114 532-618 (971)
120 1hs7_A Syntaxin VAM3; UP-and-D 32.1 1.9E+02 0.0066 25.3 8.3 79 188-266 11-94 (97)
121 4gns_B Protein CSD3, chitin bi 31.3 1E+02 0.0035 36.1 8.3 95 16-115 613-742 (754)
122 2qdj_A Retinoblastoma-associat 31.1 1.4E+02 0.0049 31.0 8.7 102 20-130 4-121 (304)
123 2x19_B Importin-13; nuclear tr 31.0 46 0.0016 38.4 5.4 70 37-110 528-598 (963)
124 2lch_A Protein OR38; structura 30.0 1.1E+02 0.0037 26.4 6.5 70 189-259 12-104 (113)
125 3l6x_A Catenin delta-1; cateni 29.3 1E+02 0.0036 34.7 7.8 72 37-110 47-118 (584)
126 2wpv_A GET4, UPF0363 protein Y 29.3 1.5E+02 0.0053 30.8 8.6 71 54-130 72-143 (312)
127 4f52_E Glomulin; cullin-ring E 28.5 2E+02 0.0068 32.6 9.9 89 38-127 317-410 (596)
128 1q2z_A ATP-dependent DNA helic 27.0 1.6E+02 0.0056 26.3 7.3 69 22-91 6-78 (120)
129 3l39_A Putative PHOU-like phos 26.5 1.4E+02 0.0049 29.1 7.4 67 189-255 36-109 (227)
130 1tqg_A Chemotaxis protein CHEA 25.8 2.3E+02 0.0078 23.9 7.7 23 237-259 81-103 (105)
131 3nmw_A APC variant protein; AR 25.4 1.1E+02 0.0037 32.0 6.6 71 39-111 264-334 (354)
132 2p6v_A Transcription initiatio 25.3 73 0.0025 28.9 4.4 33 80-112 23-56 (114)
133 2dnx_A Syntaxin-12; snare, HAB 25.3 2.6E+02 0.0089 25.2 8.4 79 187-265 21-113 (130)
134 1wxp_A THO complex subunit 1; 24.9 70 0.0024 28.0 4.3 37 94-134 52-88 (110)
135 1rw2_A ATP-dependent DNA helic 23.1 2.3E+02 0.0077 26.6 7.7 69 22-91 37-109 (152)
136 2yqf_A Ankyrin-1; death domain 22.8 1.1E+02 0.0038 26.7 5.2 36 95-134 54-89 (111)
137 2of5_H Leucine-rich repeat and 21.5 1.1E+02 0.0039 27.1 5.1 72 60-134 14-85 (118)
138 2c0s_A Conserved domain protei 21.5 2E+02 0.0067 23.4 6.0 48 215-266 3-52 (64)
139 3ibv_A Exportin-T; karyopherin 21.4 3.7E+02 0.013 32.0 10.8 105 4-112 10-120 (980)
140 3m1i_C Exportin-1; heat repeat 21.3 1.4E+02 0.0047 35.3 7.1 43 31-73 533-575 (1049)
141 3now_A UNC-45 protein, SD10334 21.1 1.3E+02 0.0045 35.4 6.8 67 39-106 709-777 (810)
142 1x4t_A Hypothetical protein LO 21.1 1.1E+02 0.0038 26.7 4.7 15 244-258 53-67 (92)
143 2hfi_A Hypothetical protein YP 20.3 1.7E+02 0.0058 27.0 6.0 75 12-89 29-106 (131)
144 2bzb_A Conserved domain protei 20.3 1.7E+02 0.0059 23.6 5.3 49 215-267 3-53 (62)
No 1
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=100.00 E-value=3.2e-42 Score=334.13 Aligned_cols=149 Identities=29% Similarity=0.451 Sum_probs=133.4
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchH
Q 005882 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (672)
Q Consensus 2 v~~lIekATse~l~~pDW~~ileICD~In~~~~~aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~ 81 (672)
++.+|+|||++.+.++||++|++|||+||.++++++||+|+|+|||+|+|++||++||+|||+||||||.+||.||++++
T Consensus 14 ~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~ 93 (171)
T 1juq_A 14 LESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFR 93 (171)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccC-----CChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhccCC--CCCCCCCCCCCCCCCCC
Q 005882 82 VLHEMVKIARKK-----PDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVF--PQRSERSAPVFTPPQTH 154 (672)
Q Consensus 82 FLneLvKLvk~k-----~d~~VKeKILeLIq~WaeaF~~~~~~~p~~~~aY~~LkrkGi~F--P~~~e~s~piftPp~t~ 154 (672)
||++|+++++++ ++..||+|||+||+.|+++|++ +++|.++|++||++||+| |..+ .++++|+||.++
T Consensus 94 Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~----~~~i~~~y~~Lk~~G~~f~~P~~~-~~~~~f~~p~~~ 168 (171)
T 1juq_A 94 FLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPE----EAKIKDAYHMLKRQGIVQSDPPIP-VDRTLIPSPPPR 168 (171)
T ss_dssp HHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTSCSSCCCBC-CCTTCC------
T ss_pred HHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHCCCCCCCCCCC-ccccCCCCCCCC
Confidence 999999999854 5789999999999999999985 478999999999999998 7655 346799988765
Q ss_pred C
Q 005882 155 P 155 (672)
Q Consensus 155 p 155 (672)
+
T Consensus 169 ~ 169 (171)
T 1juq_A 169 P 169 (171)
T ss_dssp -
T ss_pred C
Confidence 4
No 2
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=100.00 E-value=4.7e-42 Score=330.56 Aligned_cols=140 Identities=30% Similarity=0.557 Sum_probs=134.5
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchH
Q 005882 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (672)
Q Consensus 2 v~~lIekATse~l~~pDW~~ileICD~In~~~~~aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~ 81 (672)
++.+|+|||++.+.++||++|++|||+||.++++++||+|+|+|||+|+|++||++||+|||+||||||.+||.||++++
T Consensus 16 ~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~ 95 (163)
T 1x5b_A 16 FEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRD 95 (163)
T ss_dssp THHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhccCCCCCCC
Q 005882 82 VLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSE 142 (672)
Q Consensus 82 FLneLvKLvk~k~d~~VKeKILeLIq~WaeaF~~~~~~~p~~~~aY~~LkrkGi~FP~~~e 142 (672)
||++|++|+++++++.||+|||+||+.|+++|++++ +|..|.++|++||++||+||..+.
T Consensus 96 Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~-~l~~i~~~Y~~Lk~~G~~FP~~~~ 155 (163)
T 1x5b_A 96 FATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKDP-QFSLISATIKSMKEEGITFPPAGS 155 (163)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTCS-TTHHHHHHHHHHHTTTCCCCCCSS
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCCc-ccHHHHHHHHHHHHcCCCCCCCCC
Confidence 999999999988999999999999999999999764 588999999999999999997764
No 3
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=100.00 E-value=4.3e-42 Score=323.13 Aligned_cols=135 Identities=29% Similarity=0.566 Sum_probs=129.9
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchH
Q 005882 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (672)
Q Consensus 2 v~~lIekATse~l~~pDW~~ileICD~In~~~~~aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~ 81 (672)
.+.+|+|||++.+.++||+.|++|||+||+++++++||+|+|+|||+|+|+++|++||+|||+||||||.+||.+|++++
T Consensus 6 ~d~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~ 85 (140)
T 3ldz_A 6 FDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRD 85 (140)
T ss_dssp THHHHHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhccCCC
Q 005882 82 VLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFP 138 (672)
Q Consensus 82 FLneLvKLvk~k~d~~VKeKILeLIq~WaeaF~~~~~~~p~~~~aY~~LkrkGi~FP 138 (672)
|+++|++++++ ++..||+||+++|+.|+++|++++ ++..|.++|++||++||+||
T Consensus 86 Fl~el~~l~~~-~~~~Vk~kil~li~~W~~~f~~~~-~l~~i~~~Y~~Lk~~G~~FP 140 (140)
T 3ldz_A 86 FASEVSNVLNK-GHPKVCEKLKALMVEWTDEFKNDP-QLSLISAMIKNLKEQGVTFP 140 (140)
T ss_dssp HHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHTTCG-GGTHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHHccCcCc
Confidence 99999999964 789999999999999999999864 58889999999999999998
No 4
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=100.00 E-value=6.7e-42 Score=324.88 Aligned_cols=136 Identities=26% Similarity=0.433 Sum_probs=129.8
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchH
Q 005882 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (672)
Q Consensus 2 v~~lIekATse~l~~pDW~~ileICD~In~~~~~aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~ 81 (672)
++.+|+|||++.+.++||++|++|||+||.++++++||+|+|+|||+|+|++||++||+|||+||||||.+||.+|++++
T Consensus 2 ~~~~iekATs~~l~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~ 81 (148)
T 1mhq_A 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFR 81 (148)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccC-----CChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhccCCCCCC
Q 005882 82 VLHEMVKIARKK-----PDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRS 141 (672)
Q Consensus 82 FLneLvKLvk~k-----~d~~VKeKILeLIq~WaeaF~~~~~~~p~~~~aY~~LkrkGi~FP~~~ 141 (672)
||++|+++++++ ++..||+|||+||+.|+++|++ .++|.++|++||++||+||...
T Consensus 82 Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~----~p~i~~~y~~Lk~~G~~Fp~~~ 142 (148)
T 1mhq_A 82 FLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPE----DIKIRDAYQMLKKQGIIKQDPK 142 (148)
T ss_dssp HHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTSSCSCCC
T ss_pred HHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCC----CchHHHHHHHHHHcCCCCCCCC
Confidence 999999999853 6889999999999999999985 4789999999999999999654
No 5
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=100.00 E-value=1e-40 Score=317.29 Aligned_cols=131 Identities=31% Similarity=0.440 Sum_probs=126.1
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchH
Q 005882 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (672)
Q Consensus 2 v~~lIekATse~l~~pDW~~ileICD~In~~~~~aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~ 81 (672)
++.+|+|||++.+.++||++|++|||+||+++++++||+|+|+|||+|+|++||++||+|||+||||||.+||.||++++
T Consensus 12 ~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~ 91 (149)
T 3g2s_A 12 LEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFR 91 (149)
T ss_dssp HHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccC-----CChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhccC
Q 005882 82 VLHEMVKIARKK-----PDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAV 136 (672)
Q Consensus 82 FLneLvKLvk~k-----~d~~VKeKILeLIq~WaeaF~~~~~~~p~~~~aY~~LkrkGi~ 136 (672)
||++|+|+++++ ++..||+|||+||+.|+++|++ .++|.++|++||++||+
T Consensus 92 Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~----~p~i~~~Y~~Lk~~Giv 147 (149)
T 3g2s_A 92 FLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPE----EVKIAEAYQMLKKQGIV 147 (149)
T ss_dssp HHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCC----CchHHHHHHHHHHCcCc
Confidence 999999999864 7889999999999999999985 47899999999999986
No 6
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=100.00 E-value=2.5e-40 Score=316.59 Aligned_cols=137 Identities=38% Similarity=0.671 Sum_probs=129.2
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhccccchhhhhcch
Q 005882 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIG-SRNSKVQLLALTLLETIIKNCGDIVHMHVAEK 80 (672)
Q Consensus 2 v~~lIekATse~l~~pDW~~ileICD~In~~~~~aKEAvRaLrKRLk-sknp~vqLlALtLLEtcVKNCG~~Fh~eVask 80 (672)
++.+|||||++.+.++||++|++|||+||.++++++||+|+|+|||+ ++|++||++||+|||+||||||.+||.+|+++
T Consensus 17 ~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~ 96 (157)
T 1elk_A 17 VGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQ 96 (157)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhH
Confidence 57899999999999999999999999999999999999999999998 59999999999999999999999999999999
Q ss_pred HHHHH-HHHHhccC--CChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhccCCCC
Q 005882 81 NVLHE-MVKIARKK--PDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQ 139 (672)
Q Consensus 81 ~FLne-LvKLvk~k--~d~~VKeKILeLIq~WaeaF~~~~~~~p~~~~aY~~LkrkGi~FP~ 139 (672)
+||++ |++++.++ ++..||+|||++|+.|+++|++++ +|..|.++|++||++||+||.
T Consensus 97 ~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~~p-~l~~i~~~Y~~Lk~~G~~FP~ 157 (157)
T 1elk_A 97 DFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRSSP-DLTGVVTIYEDLRRKGLEFPM 157 (157)
T ss_dssp HHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcCCCc-chHHHHHHHHHHHHcCCCCCC
Confidence 99999 89999654 457999999999999999999764 689999999999999999993
No 7
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=100.00 E-value=1.7e-39 Score=327.08 Aligned_cols=146 Identities=35% Similarity=0.682 Sum_probs=137.3
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchH
Q 005882 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (672)
Q Consensus 2 v~~lIekATse~l~~pDW~~ileICD~In~~~~~aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~ 81 (672)
++++|+|||++.|.++||++|++|||+||+++++++||+|+|+|||+++|++||++||+|||+||||||.+||.||++++
T Consensus 9 ~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~ 88 (226)
T 3zyq_A 9 FERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQ 88 (226)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhccCCCCCCCCCCCCCC
Q 005882 82 VLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSERSAPVFT 149 (672)
Q Consensus 82 FLneLvKLvk~k~d~~VKeKILeLIq~WaeaF~~~~~~~p~~~~aY~~LkrkGi~FP~~~e~s~pift 149 (672)
||++|++|++++++..||+|||+||+.|+++|+++ .+|+.|.++|++||++||+||+..+.+ .+|+
T Consensus 89 fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~-~~l~~i~~~Y~~Lk~~G~~FP~~~~~d-amf~ 154 (226)
T 3zyq_A 89 TMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNE-PKYKVVQDTYQIMKVEGHVFPEFKESD-AMFA 154 (226)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTC-GGGHHHHHHHHHHHHHTCCCCCCCGGG-GCCC
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCC-cchHHHHHHHHHHHhcCCCcccchhHH-Hhhh
Confidence 99999999998899999999999999999999986 468899999999999999999875433 3554
No 8
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=100.00 E-value=3.8e-39 Score=307.38 Aligned_cols=132 Identities=30% Similarity=0.565 Sum_probs=124.7
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHhccccchhhhhcch
Q 005882 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGS-RNSKVQLLALTLLETIIKNCGDIVHMHVAEK 80 (672)
Q Consensus 2 v~~lIekATse~l~~pDW~~ileICD~In~~~~~aKEAvRaLrKRLks-knp~vqLlALtLLEtcVKNCG~~Fh~eVask 80 (672)
++.+|+|||++.+.++||++|++|||+||++++++|||+|+|+|||++ +|+++|++||+|||+||||||.+||.+|+++
T Consensus 17 ~~~~IekATs~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask 96 (152)
T 3rru_A 17 VGHLIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKK 96 (152)
T ss_dssp HHHHHHHHTCSSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSH
T ss_pred HHHHHHHHcCCCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence 689999999999999999999999999999999999999999999995 6999999999999999999999999999999
Q ss_pred HHHHH-HHHHhccC--CChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhc
Q 005882 81 NVLHE-MVKIARKK--PDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAG 134 (672)
Q Consensus 81 ~FLne-LvKLvk~k--~d~~VKeKILeLIq~WaeaF~~~~~~~p~~~~aY~~LkrkG 134 (672)
+||++ |+++++++ ++..||+|||+||+.|+++|++++ +++.|.++|++|+++|
T Consensus 97 ~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~~p-~l~~i~~~Y~~Lk~~G 152 (152)
T 3rru_A 97 EFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPGGV-DVSEVKEVYLDLVKKG 152 (152)
T ss_dssp HHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSSSC-CCHHHHHHHHHHHHC-
T ss_pred HhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHCc
Confidence 99998 89999865 566899999999999999999875 6899999999999998
No 9
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=100.00 E-value=3.9e-37 Score=307.95 Aligned_cols=146 Identities=31% Similarity=0.527 Sum_probs=136.2
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchH
Q 005882 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (672)
Q Consensus 2 v~~lIekATse~l~~pDW~~ileICD~In~~~~~aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~ 81 (672)
++.+|||||++.+.++||++|++|||+||.+++++|||+|+|+|||+++|+++|++||+|||+||||||.+||.||++++
T Consensus 6 ~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~ 85 (220)
T 1dvp_A 6 FCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKE 85 (220)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhccCCCCCCCCCCCCCC
Q 005882 82 VLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSERSAPVFT 149 (672)
Q Consensus 82 FLneLvKLvk~k~d~~VKeKILeLIq~WaeaF~~~~~~~p~~~~aY~~LkrkGi~FP~~~e~s~pift 149 (672)
||++|++++++.++.+||+|||++|+.|+++|+++. +|..|.++|+.|+++|+.||...+ ..++|+
T Consensus 86 fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~-~~~~i~~~y~~Lk~~G~~FP~~~e-~~a~f~ 151 (220)
T 1dvp_A 86 NCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSSD-KYQAIKDTMTILKAKGHTFPELRE-ADAMFT 151 (220)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTCS-SCCHHHHHHHHHHHTTCCCCCCCC----CCC
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHhhcCcccccccc-cccccc
Confidence 999999999888889999999999999999999764 688999999999999999997753 345665
No 10
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=99.88 E-value=5e-24 Score=209.01 Aligned_cols=132 Identities=19% Similarity=0.340 Sum_probs=100.3
Q ss_pred CCCCCCCCCchhh--hHhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCh----H-HHHHHHHHHHHHHHHHH
Q 005882 157 TSYPQNFRNPEHQ--QEAAEASAESEFPTLSLTEIQNARGIMDVLAEMLNALDPNNK----E-EVIVDLVDQCRTYKQRV 229 (672)
Q Consensus 157 S~~P~dlr~an~~--q~~~e~s~~~e~~s~~lsELe~ak~nvkLL~EML~~l~P~~~----e-Eli~EL~~qCR~mr~RV 229 (672)
+++|+|++.||++ .++.++..+.++.+++++||++|+++++||+|||++++|++. + |+++|||++||++|+||
T Consensus 44 s~~PeDL~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i 123 (186)
T 1oxz_A 44 SSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTL 123 (186)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHHHHHHH
Confidence 6788888888877 356666777888888889999999999999999999998753 4 99999999999999999
Q ss_pred HHHhhcC-CCHHHHHHHhhhhHHHHHHHHHHHhhhcCCcccccccCCCCCcCCCccccccCC
Q 005882 230 VHLVNST-ADESLLCQGLQLNDDLQRLLAKHESFASGKSAQTAQTDKPKTESKSSEALVDVD 290 (672)
Q Consensus 230 ~rLIq~t-~DEElL~eLL~lNDeLn~VLekYE~l~~g~~~~~~~~~k~~~~~~~~~~LiDl~ 290 (672)
++||+++ +||++|++||++||+|++||++|+++++|+...++....+. .+++++|||++
T Consensus 124 ~~Li~e~~ddee~L~elL~~ND~Ln~vl~kY~~~~~g~~~~~~~~~~~~--~~~~~~l~dl~ 183 (186)
T 1oxz_A 124 FRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNGDATAGSI--PGSTSALLDLS 183 (186)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHTTHHHHCC-----------------------
T ss_pred HHHHHHccCCHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCccccCCCC--CCCcccccCCc
Confidence 9999877 68999999999999999999999999999987543222222 25667999984
No 11
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=99.84 E-value=3.7e-21 Score=181.23 Aligned_cols=113 Identities=18% Similarity=0.339 Sum_probs=94.3
Q ss_pred CCCCCCCCCCchhh--hHhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCC---h-H-HHHHHHHHHHHHHHHH
Q 005882 156 LTSYPQNFRNPEHQ--QEAAEASAESEFPTLSLTEIQNARGIMDVLAEMLNALDPNN---K-E-EVIVDLVDQCRTYKQR 228 (672)
Q Consensus 156 ~S~~P~dlr~an~~--q~~~e~s~~~e~~s~~lsELe~ak~nvkLL~EML~~l~P~~---~-e-Eli~EL~~qCR~mr~R 228 (672)
+++.|+|++.||++ .++.++..++++.+++.+||++|+++++||+|||++++|++ . + |+++|||++||++|+|
T Consensus 18 rs~~P~DL~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~v~~n~~LL~EML~~~~p~~~~~~~d~Ell~eL~~~ck~~qp~ 97 (140)
T 1o3x_A 18 KSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPT 97 (140)
T ss_dssp ---------CCCSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCChhhHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 46889999999977 45666777788888888999999999999999999999875 2 3 9999999999999999
Q ss_pred HHHHhhcC-CCHHHHHHHhhhhHHHHHHHHHHHhhhcCCcc
Q 005882 229 VVHLVNST-ADESLLCQGLQLNDDLQRLLAKHESFASGKSA 268 (672)
Q Consensus 229 V~rLIq~t-~DEElL~eLL~lNDeLn~VLekYE~l~~g~~~ 268 (672)
|++||+++ +||++|++||.+||+|++||++|+++++|..+
T Consensus 98 i~~li~e~~ddee~l~elL~~ND~ln~vl~kY~~~~~g~~~ 138 (140)
T 1o3x_A 98 LFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEV 138 (140)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHccCCHHHHHHHHHhhHHHHHHHHHHHHHhcCCCC
Confidence 99999887 68899999999999999999999999999876
No 12
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=99.83 E-value=1.9e-21 Score=186.36 Aligned_cols=114 Identities=18% Similarity=0.343 Sum_probs=97.0
Q ss_pred CCCCCCCCCchhh--hHhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCh----H-HHHHHHHHHHHHHHHHH
Q 005882 157 TSYPQNFRNPEHQ--QEAAEASAESEFPTLSLTEIQNARGIMDVLAEMLNALDPNNK----E-EVIVDLVDQCRTYKQRV 229 (672)
Q Consensus 157 S~~P~dlr~an~~--q~~~e~s~~~e~~s~~lsELe~ak~nvkLL~EML~~l~P~~~----e-Eli~EL~~qCR~mr~RV 229 (672)
++.|+|++.||++ .++.++..++++.+++.+||++|+++++||+|||++++|++. + |+++|||++||++|+||
T Consensus 28 s~~PeDL~~AN~LiK~m~~~d~~r~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i 107 (158)
T 1naf_A 28 SSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTL 107 (158)
T ss_dssp SCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHHHHH
T ss_pred cCChhhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHHHHH
Confidence 5678899999987 456667777888888889999999999999999999999853 3 99999999999999999
Q ss_pred HHHhhcC-CCHHHHHHHhhhhHHHHHHHHHHHhhhcCCcccc
Q 005882 230 VHLVNST-ADESLLCQGLQLNDDLQRLLAKHESFASGKSAQT 270 (672)
Q Consensus 230 ~rLIq~t-~DEElL~eLL~lNDeLn~VLekYE~l~~g~~~~~ 270 (672)
++||+++ +||++|++||.+||+|++||++|+++++|+...+
T Consensus 108 ~~Li~e~~ddee~L~elL~~ND~Ln~vl~kY~~~~~g~~~~~ 149 (158)
T 1naf_A 108 FRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNG 149 (158)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHccCCHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCC
Confidence 9999877 6899999999999999999999999999988743
No 13
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=99.82 E-value=1.1e-20 Score=169.59 Aligned_cols=90 Identities=32% Similarity=0.490 Sum_probs=82.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCChH----HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhhhhHHHHH
Q 005882 179 SEFPTLSLTEIQNARGIMDVLAEMLNALDPNNKE----EVIVDLVDQCRTYKQRVVHLVNSTADESLLCQGLQLNDDLQR 254 (672)
Q Consensus 179 ~e~~s~~lsELe~ak~nvkLL~EML~~l~P~~~e----Eli~EL~~qCR~mr~RV~rLIq~t~DEElL~eLL~lNDeLn~ 254 (672)
+|+.+++.+||++|+++++||+|||++++|++.+ |+++|||++||++|+||++||+.++||++|++||++||+|++
T Consensus 5 ~eq~~k~~~el~~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~qp~i~~li~~~~dee~l~~lL~~ND~L~~ 84 (103)
T 1wrd_A 5 SEQIGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQIANEQLTEELLIVNDNLNN 84 (103)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHhhHHHHH
Confidence 3455566789999999999999999999998642 999999999999999999999988999999999999999999
Q ss_pred HHHHHHhhhcCCcc
Q 005882 255 LLAKHESFASGKSA 268 (672)
Q Consensus 255 VLekYE~l~~g~~~ 268 (672)
||+||+++++|+..
T Consensus 85 vl~ry~~~~~~~~~ 98 (103)
T 1wrd_A 85 VFLRHERFERFRTG 98 (103)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCCCC
Confidence 99999999998764
No 14
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G
Probab=99.79 E-value=6.9e-20 Score=166.41 Aligned_cols=90 Identities=22% Similarity=0.380 Sum_probs=79.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhcCCCChH----HHHHHHHHHHHHHHHHHHHHhhcC-CCHHHHHHHhhhhHHHHHH
Q 005882 181 FPTLSLTEIQNARGIMDVLAEMLNALDPNNKE----EVIVDLVDQCRTYKQRVVHLVNST-ADESLLCQGLQLNDDLQRL 255 (672)
Q Consensus 181 ~~s~~lsELe~ak~nvkLL~EML~~l~P~~~e----Eli~EL~~qCR~mr~RV~rLIq~t-~DEElL~eLL~lNDeLn~V 255 (672)
+.+++.+||++++++++||+|||+++.|++.+ |+++|||.+||++|+||++||+++ +||++|++||++||+|++|
T Consensus 2 ~~~k~~~eLe~V~~n~~LL~EML~~~~pg~~~~~d~ell~ELy~~ck~~qp~i~kL~~e~~ddde~l~elL~~ND~ln~v 81 (111)
T 1wr6_A 2 KVTKRLHTLEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQCENKRRTLFKLASETEDNDNSLGDILQASDNLSRV 81 (111)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHHTTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhHHHHHH
Confidence 45567789999999999999999999998652 999999999999999999999887 5889999999999999999
Q ss_pred HHHHHhhhcCCcccc
Q 005882 256 LAKHESFASGKSAQT 270 (672)
Q Consensus 256 LekYE~l~~g~~~~~ 270 (672)
|+||+++++|+...+
T Consensus 82 i~rY~~~~~g~~~~~ 96 (111)
T 1wr6_A 82 INSYKTIIEGQVING 96 (111)
T ss_dssp HTHHHHTTTCC----
T ss_pred HHHHHHHhcCCCCCC
Confidence 999999999998754
No 15
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=98.14 E-value=1.5e-05 Score=75.13 Aligned_cols=98 Identities=17% Similarity=0.239 Sum_probs=76.0
Q ss_pred cCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCCh
Q 005882 17 PDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDT 96 (672)
Q Consensus 17 pDW~~ileICD~In~~~~~aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~ 96 (672)
..-..|-.+..........+++++.+|.++|++-.+..-|-+|-|+|..+||||..|+..++. .+.+-+..... ..+.
T Consensus 22 nSk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~-~l~~~f~~~~~-~~d~ 99 (144)
T 1sz9_A 22 NSRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSR-NLFNLYKRTYL-LVDN 99 (144)
T ss_dssp CCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHT-THHHHHHHHHH-TSCH
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHH-HHHHHHHHHHH-hCCH
Confidence 344455555555555556899999999999999999999999999999999999999876665 23333333332 3689
Q ss_pred hHHHHHHHHHHHHHHHhCCC
Q 005882 97 HVKEKILILIDTWQEAFGGP 116 (672)
Q Consensus 97 ~VKeKILeLIq~WaeaF~~~ 116 (672)
.+|.|+.+|+..|.+.|...
T Consensus 100 ~~r~k~~rL~~~W~~~~~~~ 119 (144)
T 1sz9_A 100 TTRTKLINMFKLWLNPNDTG 119 (144)
T ss_dssp HHHHHHHHHHHHHTSGGGCS
T ss_pred HHHHHHHHHHHHHhCcccCC
Confidence 99999999999999986653
No 16
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=98.11 E-value=7.3e-06 Score=77.23 Aligned_cols=104 Identities=25% Similarity=0.275 Sum_probs=81.2
Q ss_pred HHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchH
Q 005882 3 NSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQ-AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (672)
Q Consensus 3 ~~lIekATse~l~~pDW~~ileICD~In~~~~~-aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~ 81 (672)
..+|.+||++.-..+--.+..|||++....... ..|.+..|-|||+++++++.+-||.||+.|++|...+|..++-+.-
T Consensus 13 ~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~ 92 (140)
T 1vdy_A 13 SRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNS 92 (140)
T ss_dssp HHHHHHTTCSCSSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhH
Confidence 357999999976666666889999999887644 6999999999999999999999999999999999988888776543
Q ss_pred HHHHHHHHhcc---CCC--------hhHHHHHHHHHHHH
Q 005882 82 VLHEMVKIARK---KPD--------THVKEKILILIDTW 109 (672)
Q Consensus 82 FLneLvKLvk~---k~d--------~~VKeKILeLIq~W 109 (672)
. ++|.+.. .++ ..||+++-+++...
T Consensus 93 ~---~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 93 V---AVRNLFHYKGHPDPLKGDALNKAVRETAHETISAI 128 (140)
T ss_dssp H---HHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 2 2343332 122 36888888887543
No 17
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=97.73 E-value=0.00028 Score=68.79 Aligned_cols=107 Identities=21% Similarity=0.253 Sum_probs=82.6
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHh-C--CCCHHHHHHHHHHHHHHHhccccchhhhhc
Q 005882 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRI-G--SRNSKVQLLALTLLETIIKNCGDIVHMHVA 78 (672)
Q Consensus 2 v~~lIekATse~l~~pDW~~ileICD~In~~~~~aKEAvRaLrKRL-k--sknp~vqLlALtLLEtcVKNCG~~Fh~eVa 78 (672)
++.+|.+||+..--+|.-..+-+||+.-... +.-.+.+..|.||| + .++-+..+-||.|||.|++|+.++|-.++
T Consensus 35 ~E~kVreATnnd~wGPs~~~m~eIa~~T~~~-~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~LLeYLl~nGse~vv~~~- 112 (176)
T 1xgw_A 35 IESKVREATNDDPWGPSGQLMGEIAKATFMY-EQFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGSERVVTSA- 112 (176)
T ss_dssp HHHHHHHHTCSCSSCCCHHHHHHHHHHTTCT-TTHHHHHHHHHHHHHSSCTTCHHHHHHHHHHHHHHHHHSCHHHHHHH-
T ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhCCHHHHHHH-
Confidence 3678999999988888888899999886654 56799999999996 4 47999999999999999999998887766
Q ss_pred chHHHHHHHHHhc-----c-CCC--hhHHHHHHHHHHHHHH
Q 005882 79 EKNVLHEMVKIAR-----K-KPD--THVKEKILILIDTWQE 111 (672)
Q Consensus 79 sk~FLneLvKLvk-----~-k~d--~~VKeKILeLIq~Wae 111 (672)
++.+..|..|-. + ..| ..||+|+-+++....+
T Consensus 113 -r~~i~~I~~L~~F~y~D~~G~D~G~~VR~kAk~i~~LL~D 152 (176)
T 1xgw_A 113 -REHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQD 152 (176)
T ss_dssp -HHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHTC
T ss_pred -HHhHHHHHhhccCeeECCCCCChHHHHHHHHHHHHHHHCC
Confidence 445544444421 1 122 3699999988876553
No 18
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=97.59 E-value=0.00031 Score=66.69 Aligned_cols=108 Identities=23% Similarity=0.270 Sum_probs=81.7
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHhccccchhhhhcc
Q 005882 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGS--RNSKVQLLALTLLETIIKNCGDIVHMHVAE 79 (672)
Q Consensus 2 v~~lIekATse~l~~pDW~~ileICD~In~~~~~aKEAvRaLrKRLks--knp~vqLlALtLLEtcVKNCG~~Fh~eVas 79 (672)
++..|..||+...-+|.-..+-+||+.-.. .....+.++.|.|||.. ++-++.+-||.|||.|++|+.++|-.++.+
T Consensus 24 ~E~~VreAT~~d~wGP~~~~m~eIa~~T~~-~~~~~eIm~~l~kRL~d~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~ 102 (148)
T 1inz_A 24 AEIKVREATSNDPWGPSSSLMSEIADLTYN-VVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKE 102 (148)
T ss_dssp HHHHHHHHSCCCSCCCCSCHHHHHHHHHTS-SHHHHHHHHHHHHGGGCCSSCTHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHHHhCC-HhhHHHHHHHHHHHHccCCcchhHhhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 467899999998888888899999998766 35678999999999986 488999999999999999998887766554
Q ss_pred hHH-HHHHHHH--hc-cCC--ChhHHHHHHHHHHHHH
Q 005882 80 KNV-LHEMVKI--AR-KKP--DTHVKEKILILIDTWQ 110 (672)
Q Consensus 80 k~F-LneLvKL--vk-~k~--d~~VKeKILeLIq~Wa 110 (672)
.-+ +..|... +. ... -..||+|+-+++....
T Consensus 103 ~~~~I~~L~~F~y~d~~g~D~G~nVR~kAk~l~~LL~ 139 (148)
T 1inz_A 103 NMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLR 139 (148)
T ss_dssp THHHHHHHHHCCCCCSSCCCCCHHHHHHHHHHHHHHT
T ss_pred hHHHHHhhcceeeeCCCCcCchHHHHHHHHHHHHHhC
Confidence 332 2223321 11 112 2479999888876554
No 19
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=97.36 E-value=0.00047 Score=65.12 Aligned_cols=106 Identities=25% Similarity=0.284 Sum_probs=80.7
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhccccchhhhhcc
Q 005882 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSR--NSKVQLLALTLLETIIKNCGDIVHMHVAE 79 (672)
Q Consensus 2 v~~lIekATse~l~~pDW~~ileICD~In~~~~~aKEAvRaLrKRLksk--np~vqLlALtLLEtcVKNCG~~Fh~eVas 79 (672)
++..|..||+...-+|.-..+-+||+.-.. .....+.++.|.|||... +-++.+-||.|||.|++|+.++|-.++.+
T Consensus 6 ~E~~VreAT~~d~wGP~~~~m~eIa~~T~~-~~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~vv~~~~~ 84 (144)
T 1eyh_A 6 AEIKVREATSNDPWGPSSSLMSEIADLTYN-VVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKE 84 (144)
T ss_dssp HHHHHHHHTCSSSSCCCHHHHHHHHHHTTS-HHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHhCC-HhhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 467899999999888888899999997654 356789999999999864 78899999999999999998877655443
Q ss_pred hHHHHHHHHHhcc-------CCC--hhHHHHHHHHHHHHHH
Q 005882 80 KNVLHEMVKIARK-------KPD--THVKEKILILIDTWQE 111 (672)
Q Consensus 80 k~FLneLvKLvk~-------k~d--~~VKeKILeLIq~Wae 111 (672)
.- ..| +.++. ..| ..||+|+-+++....+
T Consensus 85 ~~--~~i-~~L~~F~y~d~~g~D~G~~VR~kak~l~~Ll~D 122 (144)
T 1eyh_A 85 NM--YAV-QTLKDFQYVDRDGKDQGVNVREKAKQLVALLRD 122 (144)
T ss_dssp TH--HHH-HGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHHC
T ss_pred hh--HHH-hhhccceeeCCCccchHHHHHHHHHHHHHHHCC
Confidence 22 222 22222 112 3799999998877764
No 20
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=97.21 E-value=0.001 Score=63.31 Aligned_cols=106 Identities=16% Similarity=0.171 Sum_probs=80.0
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHhccccchhhhhc
Q 005882 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGS---RNSKVQLLALTLLETIIKNCGDIVHMHVA 78 (672)
Q Consensus 2 v~~lIekATse~l~~pDW~~ileICD~In~~~~~aKEAvRaLrKRLks---knp~vqLlALtLLEtcVKNCG~~Fh~eVa 78 (672)
++..|..||+...-+|.-..+-+|++.--. ...-.+.+..|.|||.. ++-+..+-||+|||.|++|+.++|-.++.
T Consensus 12 ~E~kVreAT~nd~wGp~~~~m~eIa~~T~~-~~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nGse~vv~~~r 90 (150)
T 3onk_A 12 MEGKVREATNNEPWGASSTLMDQISQGTYN-FREREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHGSERFIDDTR 90 (150)
T ss_dssp HHHHHHHHTSSCSSCCCHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 467899999987778888888888876543 34568999999999964 47999999999999999999888877765
Q ss_pred chHHHHHHHHHhcc--CC-----C--hhHHHHHHHHHHHHHH
Q 005882 79 EKNVLHEMVKIARK--KP-----D--THVKEKILILIDTWQE 111 (672)
Q Consensus 79 sk~FLneLvKLvk~--k~-----d--~~VKeKILeLIq~Wae 111 (672)
+-. ..|..| +. .. | ..||+|+-+++.-..+
T Consensus 91 ~~~--~~i~~L-~~F~~~d~~G~D~G~~VR~kak~l~~LL~D 129 (150)
T 3onk_A 91 NSI--NLIRIL-ETFHYIDSQGRDQGINVRTRVKALIELLSD 129 (150)
T ss_dssp TTH--HHHHGG-GGCCCBCTTSCBCHHHHHHHHHHHHHHHTC
T ss_pred HHH--HHHHhh-hcccccCCCCCchHHHHHHHHHHHHHHHcC
Confidence 433 333333 22 11 1 3799999998877654
No 21
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=96.82 E-value=0.0028 Score=57.98 Aligned_cols=93 Identities=12% Similarity=0.143 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhH
Q 005882 19 WAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHV 98 (672)
Q Consensus 19 W~~ileICD~In~~~~~aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~V 98 (672)
-..|-.+...+-.....+++.+.+|.++|+.-.+..-+..|-|++.+++||+.+....+. +.|-..|..++..-.++.+
T Consensus 21 ~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~-~~f~~~l~~~~~~~~~~~~ 99 (132)
T 4flb_A 21 MESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFR-ESFADVLPEAAALVKDPSV 99 (132)
T ss_dssp HHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHH-HHHHTTHHHHHHTTCSTTT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHH-HHHHHHHHHHHHHhCCHHH
Confidence 344555655555555679999999999999888888999999999999999876554433 2344445555554356789
Q ss_pred HHHHHHHHHHHHHH
Q 005882 99 KEKILILIDTWQEA 112 (672)
Q Consensus 99 KeKILeLIq~Waea 112 (672)
|+|+..+|..|.+.
T Consensus 100 ~~kl~~ll~iW~~r 113 (132)
T 4flb_A 100 SKSVERIFKIWEDR 113 (132)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC
Confidence 99999999999985
No 22
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=96.43 E-value=0.0056 Score=57.50 Aligned_cols=91 Identities=15% Similarity=0.220 Sum_probs=68.4
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhh---hhcchHHHHHHHHHhcc--CCC
Q 005882 21 MNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHM---HVAEKNVLHEMVKIARK--KPD 95 (672)
Q Consensus 21 ~ileICD~In~~~~~aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~---eVask~FLneLvKLvk~--k~d 95 (672)
.|-.|....-.....++..|..|.++|+.-.+..-|-+|-|+|.+++||+..... +++ ..|...|.+++.. +.+
T Consensus 25 ~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~-~~F~~~L~~~f~~~~~~~ 103 (145)
T 3d9j_A 25 KMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFA-PRFSNNIISTFQNLYRCP 103 (145)
T ss_dssp HHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHH-HHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHH-HHHHHHHHHHHHHHHhCC
Confidence 4444444444444578999999999999888888899999999999999985532 222 3576777766542 345
Q ss_pred hhHHHHHHHHHHHHHHH
Q 005882 96 THVKEKILILIDTWQEA 112 (672)
Q Consensus 96 ~~VKeKILeLIq~Waea 112 (672)
..+|.||..|+..|.+.
T Consensus 104 ~~~r~kl~rLl~iW~~r 120 (145)
T 3d9j_A 104 GDDKSKIVRVLNLWQKN 120 (145)
T ss_dssp GGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 89999999999999863
No 23
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.011 Score=51.67 Aligned_cols=71 Identities=20% Similarity=0.233 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhcCC-CC--h---HHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhhhhHHHHHHHHHHHhhhcC
Q 005882 193 RGIMDVLAEMLNALDP-NN--K---EEVIVDLVDQCRTYKQRVVHLVNSTADESLLCQGLQLNDDLQRLLAKHESFASG 265 (672)
Q Consensus 193 k~nvkLL~EML~~l~P-~~--~---eEli~EL~~qCR~mr~RV~rLIq~t~DEElL~eLL~lNDeLn~VLekYE~l~~g 265 (672)
..+|+.|-++|...+| ++ . ++.|++||.+|-.+|++|.++|....... .+|+.+|+.|.++-.-|+.+...
T Consensus 9 ~~~vd~Ll~~L~~~~p~~~~~~~~~d~eiq~LY~~v~~lRPkL~~li~kysqKk--~eL~~Ln~kl~~a~~~Yd~lle~ 85 (88)
T 2pjw_H 9 KTTIDQLHNSLNAASKTGNSNEVLQDPHIGDMYGSVTPLRPQVTRMLGKYAKEK--EDMLSLRQVLANAERSYNQLMDR 85 (88)
T ss_dssp HHHHHHHHHHHHHHHTTCCTHHHHSCHHHHHHHHHHTTHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHhcCCCCCchhhhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888988776 21 1 29999999999999999999998764333 37899999999999999998654
No 24
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=95.71 E-value=0.0055 Score=56.03 Aligned_cols=91 Identities=20% Similarity=0.237 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccc---cchhhhhcchHHHHHHHHHhccCCCh
Q 005882 20 AMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCG---DIVHMHVAEKNVLHEMVKIARKKPDT 96 (672)
Q Consensus 20 ~~ileICD~In~~~~~aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG---~~Fh~eVask~FLneLvKLvk~k~d~ 96 (672)
..|-.++..+-.....+++.+.+|.++|+...+..-+..|-|++.+++||. ..|...+.. .|-++...+-...+.
T Consensus 21 ~sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~~y~~~f~~--~l~~~~~~~~~~~~~ 98 (135)
T 4fu3_A 21 QSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFES--VLVDAFSHVAREADE 98 (135)
T ss_dssp THHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCSHHHHHHHT--THHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHcCCH
Confidence 345555555555556799999999999987666777899999999999994 334333321 222222222222456
Q ss_pred hHHHHHHHHHHHHHHH
Q 005882 97 HVKEKILILIDTWQEA 112 (672)
Q Consensus 97 ~VKeKILeLIq~Waea 112 (672)
.+|+||..+|..|.+.
T Consensus 99 ~~k~kl~kll~iW~~r 114 (135)
T 4fu3_A 99 GCKKPLERLLNIWQER 114 (135)
T ss_dssp TSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCC
Confidence 7899999999999984
No 25
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=94.94 E-value=0.16 Score=49.42 Aligned_cols=95 Identities=16% Similarity=0.185 Sum_probs=76.1
Q ss_pred CcCHH----HHHHHHHHHhCCC----CCHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHH
Q 005882 16 GPDWA----MNIEICDMLNHDP----GQAKDVVKGIKKRI-GSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEM 86 (672)
Q Consensus 16 ~pDW~----~ileICD~In~~~----~~aKEAvRaLrKRL-ksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneL 86 (672)
+.||. .+..|+.+|+..+ ..-.+.+++|+++| +..|.+|...|+..|..|.+..|..|+..+ ..|+..|
T Consensus 26 s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~--~~ilp~l 103 (242)
T 2qk2_A 26 EKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA--SACVPSL 103 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHH
Confidence 35886 5777888887621 23468899999999 599999999999999999999998887644 3588888
Q ss_pred HHHhccCCChhHHHHHHHHHHHHHHHh
Q 005882 87 VKIARKKPDTHVKEKILILIDTWQEAF 113 (672)
Q Consensus 87 vKLvk~k~d~~VKeKILeLIq~WaeaF 113 (672)
.+.++. ....||+.+.+.|..+...+
T Consensus 104 l~~l~d-~~~~vr~~a~~aL~~~~~~~ 129 (242)
T 2qk2_A 104 LEKFKE-KKPNVVTALREAIDAIYAST 129 (242)
T ss_dssp HHGGGC-CCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHcC-CCHHHHHHHHHHHHHHHHcC
Confidence 777776 35789999999999997643
No 26
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=94.80 E-value=0.11 Score=45.65 Aligned_cols=69 Identities=12% Similarity=0.237 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhc---CCCC--hHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhhhhHHHHHHHHHHHhhhcC
Q 005882 195 IMDVLAEMLNAL---DPNN--KEEVIVDLVDQCRTYKQRVVHLVNSTADESLLCQGLQLNDDLQRLLAKHESFASG 265 (672)
Q Consensus 195 nvkLL~EML~~l---~P~~--~eEli~EL~~qCR~mr~RV~rLIq~t~DEElL~eLL~lNDeLn~VLekYE~l~~g 265 (672)
++.+|...++.+ .+++ .++-+++||++|-.+|+||.+.|.....- ..+|+.+||.|..|..-||++...
T Consensus 10 ~I~lF~~lv~~~k~~~~~~i~~d~~LqeLy~kv~~lRPKL~r~l~~~~~K--~~~L~~mn~Kls~a~rlYD~lLE~ 83 (91)
T 2pjw_V 10 SIYMFASLVEKMKSRPLNEILEDSKLQNLAQRVFASKARLNYALNDKAQK--YNTLIEMNGKISEIMNIYDRLLEQ 83 (91)
T ss_dssp HHHHHHHHHHHHHTCSCSTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccccCCHHHHHHHHHHHhHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555544432 2332 23999999999999999999999766322 347899999999999999998654
No 27
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=94.42 E-value=0.13 Score=53.57 Aligned_cols=74 Identities=15% Similarity=0.071 Sum_probs=64.9
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhh
Q 005882 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHM 75 (672)
Q Consensus 2 v~~lIekATse~l~~pDW~~ileICD~In~~~~~aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~ 75 (672)
++..|.|||+....-|+-..+-+|............+++++|.+|++.+|..|++-||.|+.-|+.-+...|-.
T Consensus 24 l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~~~~~~~~~~L~~R~~~~~w~va~K~LivlH~llreG~~~~~~ 97 (299)
T 1hx8_A 24 LAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIERSQNANWVVVYKSLITTHHLMAYGNERFMQ 97 (299)
T ss_dssp HHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHhccCCCCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 45789999999988999999999988888877778999999999999999999999999999999987654433
No 28
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=94.18 E-value=0.15 Score=52.56 Aligned_cols=71 Identities=14% Similarity=0.106 Sum_probs=62.7
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccc
Q 005882 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDI 72 (672)
Q Consensus 2 v~~lIekATse~l~~pDW~~ileICD~In~~~~~aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~ 72 (672)
++..|.|||+.....|+-..+-+|.-..........+.+++|.+||..+|..|++-||.++..|+..+...
T Consensus 29 l~~aV~KATs~~~~~Pk~Khv~~il~~T~~~~~~~~~~~~~L~~Rl~~~~w~v~~KaLivlH~llreG~~~ 99 (271)
T 3zyl_A 29 VSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNER 99 (271)
T ss_dssp HHHHHHHHTCSSSSCCCHHHHHHHHHHHHSTTSCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHhcCCCCCCCCCHHHHHHHHHHHccCCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhcCCHH
Confidence 46789999999988899888888887777777778999999999999999999999999999999986543
No 29
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=94.06 E-value=0.24 Score=46.07 Aligned_cols=91 Identities=13% Similarity=0.147 Sum_probs=64.0
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHh---ccCCC
Q 005882 21 MNIEICDMLNHDPGQAKDVVKGIKKRIGSR--NSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIA---RKKPD 95 (672)
Q Consensus 21 ~ileICD~In~~~~~aKEAvRaLrKRLksk--np~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLv---k~k~d 95 (672)
.|-.+..-+-.....+++.+..+.++|... ++...+.-|-|++-++.||-.+...++.+ .|-.-|..++ ....+
T Consensus 21 sIq~~s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f~~-~F~~~L~~~~~~~~~~~~ 99 (142)
T 2km4_A 21 SISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQFQD-SFGKVAAEVLGRINQEFP 99 (142)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHHHH-HHHHTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHHHH-HHHHHHHHHHHHHHHcCC
Confidence 344444444455568999999999999876 78888999999999999996443222221 2222233332 22368
Q ss_pred hhHHHHHHHHHHHHHHH
Q 005882 96 THVKEKILILIDTWQEA 112 (672)
Q Consensus 96 ~~VKeKILeLIq~Waea 112 (672)
+.++.||..+|..|.+.
T Consensus 100 ~~~~~kv~rvl~iWeer 116 (142)
T 2km4_A 100 RDLKKKLSRVVNILKER 116 (142)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 99999999999999986
No 30
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=93.82 E-value=0.2 Score=52.61 Aligned_cols=71 Identities=14% Similarity=0.106 Sum_probs=62.5
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccc
Q 005882 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDI 72 (672)
Q Consensus 2 v~~lIekATse~l~~pDW~~ileICD~In~~~~~aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~ 72 (672)
++..|.|||+....-|+-..+-+|............+.+++|.+||..+|..+++-||.++..|+..+.+.
T Consensus 29 l~~aV~KATs~~~~pPk~Khv~~il~~T~~~~~~~~~i~~~L~~Rl~~~~w~vv~KaLivlH~llreG~~~ 99 (310)
T 3zym_A 29 VSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNER 99 (310)
T ss_dssp HHHHHHHHTCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHhcCcCCCCCCChhHHHHHHHHHccCCCcHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhcCCHH
Confidence 46789999999999999998888887777766678999999999999999999999999999999976543
No 31
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=92.52 E-value=0.84 Score=45.54 Aligned_cols=94 Identities=13% Similarity=0.243 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccc---chhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q 005882 36 AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGD---IVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEA 112 (672)
Q Consensus 36 aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~---~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~Waea 112 (672)
..+.+..|..-|+|+|+.+...||..|..|+++++. .|...+ .+.++..|.+++.. ++..||+...+.|-.-...
T Consensus 144 l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l-~~~iip~l~~~l~D-~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 144 NEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYL-KDEVVPIVIQIVND-TQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp THHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHH-TTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHH-HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH
Confidence 457777788888999999999999999999999984 454433 23588888888765 5789999999999999999
Q ss_pred hCCCCCChhHHHHHHHHHHHh
Q 005882 113 FGGPRARYPQYYAAYQELLRA 133 (672)
Q Consensus 113 F~~~~~~~p~~~~aY~~Lkrk 133 (672)
++.. .+..|....+..|++
T Consensus 222 vG~~--~~~p~l~~Ld~~k~~ 240 (249)
T 2qk1_A 222 FGMN--TFVKTLEHLDNLKRK 240 (249)
T ss_dssp HCSG--GGHHHHHHSCHHHHH
T ss_pred hCHH--HHHHHHHHHhHHHHH
Confidence 9752 355555444555543
No 32
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=92.50 E-value=0.26 Score=50.48 Aligned_cols=93 Identities=16% Similarity=0.140 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCC
Q 005882 36 AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGG 115 (672)
Q Consensus 36 aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~WaeaF~~ 115 (672)
.++++..|.+=|..+|+.++++||.+||-++|-......+.+- +++++.++++++. .+.+|.-|.++.|...=+...-
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~-~dEkval~A~r~L~~LLe~vpL 108 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQ-ENEKVTIKALRALGYLVKDVPM 108 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCS-TTHHHHHHHHHHHHHHHTTCCB
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhc-cchhHHHHHHHHHHHHHcCCCC
Confidence 3567888999999999999999999999999998667776666 5799999999965 5789999999998888776554
Q ss_pred CCCChhHHHHHHHHH
Q 005882 116 PRARYPQYYAAYQEL 130 (672)
Q Consensus 116 ~~~~~p~~~~aY~~L 130 (672)
+...|.++..+...+
T Consensus 109 ~~~~y~Kl~~aL~dl 123 (265)
T 3b2a_A 109 GSKTFLKAAKTLVSL 123 (265)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 333344455555444
No 33
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=91.40 E-value=0.98 Score=45.06 Aligned_cols=98 Identities=16% Similarity=0.137 Sum_probs=73.5
Q ss_pred CCcCHH----HHHHHHH-HHhCCC------CCHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHhccc-cchhhhhcchH
Q 005882 15 IGPDWA----MNIEICD-MLNHDP------GQAKDVVKGIKKRI-GSRNSKVQLLALTLLETIIKNCG-DIVHMHVAEKN 81 (672)
Q Consensus 15 ~~pDW~----~ileICD-~In~~~------~~aKEAvRaLrKRL-ksknp~vqLlALtLLEtcVKNCG-~~Fh~eVask~ 81 (672)
.+.+|. ...+|.. +++..+ ..-.+.+++|++.| +..|..+...|+..|..+.+..+ ..|...+. ..
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~-~~ 104 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYV-SL 104 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHH-HH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHH-HH
Confidence 345887 4566777 665422 12268899999999 79999999999999999999888 77762222 24
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHhC
Q 005882 82 VLHEMVKIARKKPDTHVKEKILILIDTWQEAFG 114 (672)
Q Consensus 82 FLneLvKLvk~k~d~~VKeKILeLIq~WaeaF~ 114 (672)
+|..|...++.+ ...|++.+...+..|.+...
T Consensus 105 llp~ll~~l~dk-k~~V~~aa~~al~~i~~~~~ 136 (249)
T 2qk1_A 105 VFTPLLDRTKEK-KPSVIEAIRKALLTICKYYD 136 (249)
T ss_dssp HHHHHHHGGGCC-CHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHcc
Confidence 666666666654 37899999999999999863
No 34
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=88.78 E-value=1 Score=43.09 Aligned_cols=100 Identities=19% Similarity=0.223 Sum_probs=67.2
Q ss_pred CcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhh----------hcc-hHHHH
Q 005882 16 GPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMH----------VAE-KNVLH 84 (672)
Q Consensus 16 ~pDW~~ileICD~In~~~~~aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~e----------Vas-k~FLn 84 (672)
.-.-+.|..|..+.-..-...+-.+..|.+-|+.-.+.-=|=+|-|+|..++||-+.|... ++. -.++.
T Consensus 19 ~iS~skI~~LT~~A~~nv~~~~~iv~~l~~~ikk~p~~hKL~~LYVvDSIvR~~~~~~~k~g~~~~a~~gt~a~~v~~~~ 98 (157)
T 3clj_A 19 GISGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLDETRSNSNSSSNKPGTCAHAINTLG 98 (157)
T ss_dssp SCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHTCCC----STTSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcceeeeeeehHHHHHHHHHHHHhcCCccCCCCccHHHHHHHHH
Confidence 3444556666666555555677788889999987777778899999999999986544220 110 01223
Q ss_pred HHHH-Hhc---cCCChhHHHHHHHHHHHHHHH--hCC
Q 005882 85 EMVK-IAR---KKPDTHVKEKILILIDTWQEA--FGG 115 (672)
Q Consensus 85 eLvK-Lvk---~k~d~~VKeKILeLIq~Waea--F~~ 115 (672)
+++. ++. .+.+...|+||.+||..|... |..
T Consensus 99 e~i~~l~~~~~~~~~~~~k~Ki~klldiW~k~~~Fp~ 135 (157)
T 3clj_A 99 EVIQELLSDAIAKSNQDHKEKIRMLLDIWDRSGLFQK 135 (157)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCCCCH
Confidence 3322 322 235789999999999999976 553
No 35
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=88.56 E-value=0.79 Score=45.75 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHH----HHHhccCCChhHHHHHHHHHHHHHH
Q 005882 36 AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEM----VKIARKKPDTHVKEKILILIDTWQE 111 (672)
Q Consensus 36 aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneL----vKLvk~k~d~~VKeKILeLIq~Wae 111 (672)
...++..|..-++++||++..-+|..|..|+++.|... +.-+.++..+ .+++. ..+..||+-.+++|.+-..
T Consensus 137 ~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~---~~~k~~l~~i~~~l~k~l~-d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 137 ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTN---VNVQTFLPELLKHVPQLAG-HGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTT---CCHHHHHHHHGGGHHHHHT-CSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCc---CCchhHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHH
Confidence 45677888888999999999999999999999987432 2334455544 44444 3789999988888766554
Q ss_pred Hh
Q 005882 112 AF 113 (672)
Q Consensus 112 aF 113 (672)
.+
T Consensus 213 ~~ 214 (278)
T 4ffb_C 213 VT 214 (278)
T ss_dssp C-
T ss_pred Hh
Confidence 44
No 36
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=88.00 E-value=1.6 Score=41.17 Aligned_cols=106 Identities=17% Similarity=0.146 Sum_probs=74.4
Q ss_pred HHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHH-----HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhh
Q 005882 3 NSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAK-----DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHV 77 (672)
Q Consensus 3 ~~lIekATse~l~~pDW~~ileICD~In~~~~~aK-----EAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eV 77 (672)
..+|....++. .+.-......|+.+...+.+..+ .++..|.+-|++.++.++..|+..|..+..++ ......+
T Consensus 5 ~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~ 82 (252)
T 4hxt_A 5 EKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-DEAIKAI 82 (252)
T ss_dssp HHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHHH
T ss_pred HHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC-hHHHHHH
Confidence 45555555542 11112233334444444432222 47888999999999999999999999998875 4667778
Q ss_pred cchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 005882 78 AEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (672)
Q Consensus 78 ask~FLneLvKLvk~k~d~~VKeKILeLIq~Wae 111 (672)
.+...+..|+++++. .+..|++.++..|.....
T Consensus 83 ~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~ 115 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTS-TDSEVQKEAARALANIAS 115 (252)
T ss_dssp HHTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHc
Confidence 888899999999985 578999999988887764
No 37
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=87.66 E-value=5.6 Score=38.33 Aligned_cols=77 Identities=14% Similarity=0.205 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccc--hhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q 005882 35 QAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDI--VHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEA 112 (672)
Q Consensus 35 ~aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~--Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~Waea 112 (672)
...+.+..|.+.|+++++.+...+|.+|..|+.+++.. |...+ ..++..|.+++.. .+.+||+.+.+.|..-...
T Consensus 130 ~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D-~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 130 SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLNE-PDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHH
Confidence 35777888889999999999999999999999998743 34333 3677777777764 5789999999998887777
Q ss_pred hC
Q 005882 113 FG 114 (672)
Q Consensus 113 F~ 114 (672)
++
T Consensus 207 vg 208 (242)
T 2qk2_A 207 MG 208 (242)
T ss_dssp HC
T ss_pred cC
Confidence 65
No 38
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=87.41 E-value=1.9 Score=42.86 Aligned_cols=74 Identities=14% Similarity=-0.007 Sum_probs=51.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcc----hHHHHHHH-HHhccCCChhHHHHHHHHHHHHHHHh
Q 005882 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAE----KNVLHEMV-KIARKKPDTHVKEKILILIDTWQEAF 113 (672)
Q Consensus 39 AvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVas----k~FLneLv-KLvk~k~d~~VKeKILeLIq~WaeaF 113 (672)
..+.|+|+|+..|..++..||.+|..+++.||..+...-.. ..++..|+ |.+. .....+++++++.+..|.+..
T Consensus 56 ~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~-~~k~~~~~~a~~~l~~~~~~~ 134 (278)
T 4ffb_C 56 DPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLT-SSRATTKTQSMSCILSLCGLD 134 (278)
T ss_dssp CTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhc-CccHHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999999998654221111 23444433 2222 245689999999999888643
No 39
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=83.37 E-value=3.7 Score=38.00 Aligned_cols=70 Identities=14% Similarity=0.204 Sum_probs=58.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 005882 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (672)
Q Consensus 39 AvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~Wa 110 (672)
++..|.+-|++.++.++..|+..|..|..+. ......+.+..++..|++++.. .+..|+++++..|...+
T Consensus 139 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 139 ALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSH-ENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-cHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHh
Confidence 6788889999999999999999999998865 4556677777899999999885 57899999999887653
No 40
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=82.20 E-value=25 Score=37.47 Aligned_cols=179 Identities=13% Similarity=0.100 Sum_probs=107.7
Q ss_pred HHHHHHHHhCCCCCH-----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCCh
Q 005882 22 NIEICDMLNHDPGQA-----KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDT 96 (672)
Q Consensus 22 ileICD~In~~~~~a-----KEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~ 96 (672)
+..|..++..+.+-+ ++-+..|-+-+.+...+.|-++|+.|-.||..- .-+...|...+|+..|..++.. .+.
T Consensus 139 LfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v-~Gm~gvvs~~~fI~~lyslv~s-~~~ 216 (339)
T 3dad_A 139 LFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFV-DGMLGVVAHSDTIQWLYTLCAS-LSR 216 (339)
T ss_dssp HHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSH-HHHHHHHHCHHHHHHHHHGGGC-SCH
T ss_pred HHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcc-ccccchhCCHHHHHHHHHHHcC-ccH
Confidence 344444454444433 344566777777789999999999999999862 2244456688999999999986 678
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHH-hccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhHhhhh
Q 005882 97 HVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLR-AGAVFPQRSERSAPVFTPPQTHPLTSYPQNFRNPEHQQEAAEA 175 (672)
Q Consensus 97 ~VKeKILeLIq~WaeaF~~~~~~~p~~~~aY~~Lkr-kGi~FP~~~e~s~piftPp~t~p~S~~P~dlr~an~~q~~~e~ 175 (672)
.|.+..|+++...-+.-. +.++.+.++.....+ .|.. .+ .+ .-+.
T Consensus 217 ~V~k~AL~LL~v~V~~se---~~~~lv~~av~~v~~~~~~~----------p~-----------------~~-Lv~~--- 262 (339)
T 3dad_A 217 LVVKTALKLLLVFVEYSE---NNAPLFIRAVNSVASTTGAP----------PW-----------------AN-LVSI--- 262 (339)
T ss_dssp HHHHHHHHHHHHHHHHCG---GGHHHHHHHHHHHHHHHCCC----------TT-----------------HH-HHHH---
T ss_pred HHHHHHHHHHHHHHccCc---ccchHHHHHHHHhhhccCCC----------cH-----------------HH-HHHH---
Confidence 999999999988877532 235555555543211 1111 00 00 0000
Q ss_pred hccCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHHhhcC-CCHHHHH
Q 005882 176 SAESEFPTLSLTEIQNARGIMDVLAEMLNALDPNNKE-EVIVDLVDQCRTYKQRVVHLVNST-ADESLLC 243 (672)
Q Consensus 176 s~~~e~~s~~lsELe~ak~nvkLL~EML~~l~P~~~e-Eli~EL~~qCR~mr~RV~rLIq~t-~DEElL~ 243 (672)
..++- -.+.+...+.+.|+|.+|...+..+.- +++.+| ..+.++..|.+++... +|-|+..
T Consensus 263 --L~~~~---~~D~elq~~amtLIN~lL~~apd~d~~~di~d~L--e~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 263 --LEEKN---GADPELLVYTVTLINKTLAALPDQDSFYDVTDAL--EQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp --HTTTT---SCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHH--HHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred --HhccC---CCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHH--HHccHHHHHHHHHhccCCCHHHHH
Confidence 01110 124555667899999999986422211 333322 1235777888888765 5655444
No 41
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=81.85 E-value=3.4 Score=42.54 Aligned_cols=89 Identities=10% Similarity=0.151 Sum_probs=67.7
Q ss_pred HHHHHHHHHhCCCCCH-----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCC
Q 005882 21 MNIEICDMLNHDPGQA-----KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPD 95 (672)
Q Consensus 21 ~ileICD~In~~~~~a-----KEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d 95 (672)
.+-.|+.+++..+.+. ..++..|.+-|++.+.+++..|..+|-.+..+ .......|.+..++..|+++++.. +
T Consensus 145 A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~-d 222 (296)
T 1xqr_A 145 ALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTE-H 222 (296)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSC-C
T ss_pred HHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCC-C
Confidence 3445666665544322 23667888888999999999999999999887 455666778889999999998864 7
Q ss_pred hhHHHHHHHHHHHHHH
Q 005882 96 THVKEKILILIDTWQE 111 (672)
Q Consensus 96 ~~VKeKILeLIq~Wae 111 (672)
..|++.++..|..-..
T Consensus 223 ~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 223 SPFHEHVLGALCSLVT 238 (296)
T ss_dssp STHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHh
Confidence 7999999998876653
No 42
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=80.86 E-value=8.5 Score=36.01 Aligned_cols=74 Identities=16% Similarity=0.108 Sum_probs=61.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhC
Q 005882 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFG 114 (672)
Q Consensus 39 AvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~WaeaF~ 114 (672)
++..|.+-|.+.++.++..|+..|..+.... ......+.+..++..|+++++. .+..|++.++..|..-.....
T Consensus 171 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 171 GVEVLVKLLTSTDSEVQKEAARALANIASGP-TSAIKAIVDAGGVEVLQKLLTS-TDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB-HHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHTCB
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHCC-CcHHHHHHHHHHHHHHHcCCC
Confidence 7888999999999999999999999988744 4455567777899999999876 577999999999988887544
No 43
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=77.77 E-value=10 Score=34.90 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=57.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 005882 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (672)
Q Consensus 38 EAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~Wa 110 (672)
.++..|.+-|++.++.++..|+..|-.+..+.. .....+.+...+..|+++++.. +..|++.++..|..-.
T Consensus 54 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~ 124 (210)
T 4db6_A 54 GALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIA 124 (210)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-HHHHHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHH
Confidence 467889999999999999999999998886543 4555666778899999998764 7899998888876654
No 44
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=77.51 E-value=11 Score=40.11 Aligned_cols=95 Identities=18% Similarity=0.192 Sum_probs=65.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchH---------HHHHHHHHhcc--CCChhHHHHHHHHH
Q 005882 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN---------VLHEMVKIARK--KPDTHVKEKILILI 106 (672)
Q Consensus 38 EAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~---------FLneLvKLvk~--k~d~~VKeKILeLI 106 (672)
+.++-|..-+.+....|...||.||+.+|.++...|...+..-. .+..|++++.. ..|.+++-..+.||
T Consensus 202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLI 281 (339)
T 3dad_A 202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLI 281 (339)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 44555555566788999999999999999999555543322222 36677888863 36889999999999
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHHHhccC
Q 005882 107 DTWQEAFGGPRARYPQYYAAYQELLRAGAV 136 (672)
Q Consensus 107 q~WaeaF~~~~~~~p~~~~aY~~LkrkGi~ 136 (672)
-.-=....+ -..+++.-..|.++|++
T Consensus 282 N~lL~~apd----~d~~~di~d~Le~~gi~ 307 (339)
T 3dad_A 282 NKTLAALPD----QDSFYDVTDALEQQGME 307 (339)
T ss_dssp HHHHHHCSS----HHHHHHHHHHHHHTTHH
T ss_pred HHHHhcCCC----hhHHHHHHHHHHHccHH
Confidence 866555432 23366677777777754
No 45
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=77.29 E-value=6.8 Score=40.32 Aligned_cols=73 Identities=15% Similarity=0.128 Sum_probs=58.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 005882 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (672)
Q Consensus 38 EAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~Wae 111 (672)
.++..|.+-|++.++.++..|+..|..+..++. .+...+.....+..|+++++...+..|++.++..|.....
T Consensus 107 ~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 179 (450)
T 2jdq_A 107 GAVPIFIELLSSEFEDVQEQAVWALGNIAGDST-MCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR 179 (450)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCH-HHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhC
Confidence 467788888999999999999999999988763 4555566667888999999865678999988887776653
No 46
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=77.07 E-value=12 Score=38.27 Aligned_cols=95 Identities=9% Similarity=0.133 Sum_probs=64.5
Q ss_pred cCHHHHHHHHHHHhCCCC-CHHHH-------HHHHHHHhCCCCHHHHHHHHHHHHHHHhccc---cchhhhhcchHHHHH
Q 005882 17 PDWAMNIEICDMLNHDPG-QAKDV-------VKGIKKRIGSRNSKVQLLALTLLETIIKNCG---DIVHMHVAEKNVLHE 85 (672)
Q Consensus 17 pDW~~ileICD~In~~~~-~aKEA-------vRaLrKRLksknp~vqLlALtLLEtcVKNCG---~~Fh~eVask~FLne 85 (672)
.||...++-+|.+...-. ..+++ .+-+.-|+.+.|.++.+.+|.+|..++.-.+ .+|+..-+. .|+--
T Consensus 58 ~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~-~~lP~ 136 (266)
T 2of3_A 58 KDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVS-AFVPY 136 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHH-HHHHH
Confidence 488888877777665322 33443 3334568889999999999999999987653 345543332 47766
Q ss_pred HHHHhccCCChhHHHHHHHHHHHHHHHh
Q 005882 86 MVKIARKKPDTHVKEKILILIDTWQEAF 113 (672)
Q Consensus 86 LvKLvk~k~d~~VKeKILeLIq~WaeaF 113 (672)
|+.-+-. ....||+++.++|..-..-+
T Consensus 137 LveKlGd-~k~~vR~~~r~il~~l~~v~ 163 (266)
T 2of3_A 137 LLLKTGE-AKDNMRTSVRDIVNVLSDVV 163 (266)
T ss_dssp HHHGGGC-SSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCC-ChHHHHHHHHHHHHHHHHHC
Confidence 6544432 34689999999998877655
No 47
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=77.06 E-value=14 Score=37.95 Aligned_cols=92 Identities=13% Similarity=0.120 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccc-cchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhC
Q 005882 36 AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCG-DIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFG 114 (672)
Q Consensus 36 aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG-~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~WaeaF~ 114 (672)
-..++..|...|++.+.++..-||..|-.+...|. ..+...+ ..++..|+++++. .+..||..++..|....+.+.
T Consensus 364 ~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d-~~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 364 VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhcc
Confidence 35677788888999999999999999999999887 3444433 4588888888875 468999999999999999886
Q ss_pred CCCCChhHHHHHHHHH
Q 005882 115 GPRARYPQYYAAYQEL 130 (672)
Q Consensus 115 ~~~~~~p~~~~aY~~L 130 (672)
..-...+.+..++..|
T Consensus 441 ~~~~~~~~l~~ll~~L 456 (462)
T 1ibr_B 441 EAAINDVYLAPLLQCL 456 (462)
T ss_dssp GGCCSTTTHHHHHHHH
T ss_pred cccccHHHHHHHHHHH
Confidence 4210123445555544
No 48
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=72.07 E-value=12 Score=40.09 Aligned_cols=73 Identities=12% Similarity=0.098 Sum_probs=59.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q 005882 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEA 112 (672)
Q Consensus 39 AvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~Waea 112 (672)
++..|.+-|.+.++.++..|+..|-.+...+ ..+...+.....+..|++++....+..|+..++..|......
T Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 161 AVPIFVKLLGSSSDDVREQAVWALGNVAGDS-PKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHTC-HHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 7778888899999999999999999988765 345666777778889999987667888998888888776654
No 49
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=71.83 E-value=10 Score=35.98 Aligned_cols=70 Identities=16% Similarity=0.260 Sum_probs=56.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 005882 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (672)
Q Consensus 39 AvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~Wa 110 (672)
++..|.+-|++.++.++..|+.+|-.+..+...+. ..+.+...+..|+++++. .+..|++.++..|....
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~ 166 (252)
T 4db8_A 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQI-QAVIDAGALPALVQLLSS-PNEQILQEALWALSNIA 166 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH-HHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHH-HHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHH
Confidence 67788888999999999999999999987764332 456677899999999976 47889999888877665
No 50
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=69.62 E-value=10 Score=35.95 Aligned_cols=70 Identities=16% Similarity=0.219 Sum_probs=56.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 005882 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (672)
Q Consensus 39 AvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~Wa 110 (672)
++..|.+-|++.++.++..|+..|..|.... ..+...+.+...+..|+++++. .+..|++.++..|..-.
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~ 124 (252)
T 4db8_A 55 ALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIA 124 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhh
Confidence 4556667788889999999999999998754 3566777777899999999987 57899999888877664
No 51
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=68.63 E-value=24 Score=32.43 Aligned_cols=78 Identities=13% Similarity=0.186 Sum_probs=45.7
Q ss_pred cCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCCh
Q 005882 17 PDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDT 96 (672)
Q Consensus 17 pDW~~ileICD~In~~~~~aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~ 96 (672)
+||..-...+..+..-. ..+++..|.+.|++.++.+...|+..|..+ ++.+.+..|++++.. .+.
T Consensus 26 ~~~~vr~~A~~~L~~~~--~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~------------~~~~~~~~L~~~l~d-~~~ 90 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIG--DERAVEPLIKALKDEDAWVRRAAADALGQI------------GDERAVEPLIKALKD-EDG 90 (201)
T ss_dssp SCHHHHHHHHHHHHHHC--CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH------------CCGGGHHHHHHHTTC-SSH
T ss_pred CCHHHHHHHHHHHHhcC--ChhHHHHHHHHHcCCCHHHHHHHHHHHHhh------------CCHHHHHHHHHHHcC-CCH
Confidence 46655554444443311 135677777777777777777777666433 233556666666654 456
Q ss_pred hHHHHHHHHHHHH
Q 005882 97 HVKEKILILIDTW 109 (672)
Q Consensus 97 ~VKeKILeLIq~W 109 (672)
.||..++..|...
T Consensus 91 ~vr~~a~~aL~~~ 103 (201)
T 3ltj_A 91 WVRQSAAVALGQI 103 (201)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6776666665443
No 52
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=68.30 E-value=14 Score=34.36 Aligned_cols=80 Identities=14% Similarity=0.122 Sum_probs=51.2
Q ss_pred CCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCC
Q 005882 15 IGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKP 94 (672)
Q Consensus 15 ~~pDW~~ileICD~In~~~~~aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~ 94 (672)
.++|+..-...|..+..-. ..+++..|.+.|.+.++.|...|+..|..+ +..+.+..|.+++.. .
T Consensus 91 ~~~~~~vr~~a~~aL~~~~--~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~------------~~~~~~~~L~~~l~d-~ 155 (211)
T 3ltm_A 91 KDEDGWVRQSAAVALGQIG--DERAVEPLIKALKDEDWFVRIAAAFALGEI------------GDERAVEPLIKALKD-E 155 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHC--CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH------------CCGGGHHHHHHHTTC-S
T ss_pred cCCCHHHHHHHHHHHHHhC--cHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------------CCHHHHHHHHHHHcC-C
Confidence 3456666555555554322 245778888888888998888888877654 223456666666643 4
Q ss_pred ChhHHHHHHHHHHHH
Q 005882 95 DTHVKEKILILIDTW 109 (672)
Q Consensus 95 d~~VKeKILeLIq~W 109 (672)
+..||..+++.|..+
T Consensus 156 ~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 156 DGWVRQSAADALGEI 170 (211)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 567777666665544
No 53
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=67.20 E-value=9.6 Score=39.13 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=59.5
Q ss_pred HHHHHHH-HhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 005882 39 VVKGIKK-RIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (672)
Q Consensus 39 AvRaLrK-RLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~Wa 110 (672)
++..|.+ -|++.++.++..|+.+|-.++.|. ..++..|.+...+..|+++++..++..|+++++..|....
T Consensus 82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n-~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~ 153 (296)
T 1xqr_A 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNV-AAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLV 153 (296)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 5666777 678999999999999999999986 4677778888899999999986567899999887777654
No 54
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=67.13 E-value=23 Score=32.49 Aligned_cols=81 Identities=14% Similarity=0.116 Sum_probs=55.7
Q ss_pred CCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCC
Q 005882 15 IGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKP 94 (672)
Q Consensus 15 ~~pDW~~ileICD~In~~~~~aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~ 94 (672)
..+|+..-...|..+..-. ..+++..|.+.|.+.++.|...|+..|..+ .+.+.+..|+++++. .
T Consensus 86 ~d~~~~vr~~a~~aL~~~~--~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~------------~~~~~~~~L~~~l~d-~ 150 (201)
T 3ltj_A 86 KDEDGWVRQSAAVALGQIG--DERAVEPLIKALKDEDWFVRIAAAFALGEI------------GDERAVEPLIKALKD-E 150 (201)
T ss_dssp TCSSHHHHHHHHHHHHHHC--CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH------------TCGGGHHHHHHHTTC-S
T ss_pred cCCCHHHHHHHHHHHHHhC--cHHHHHHHHHHHcCCCHHHHHHHHHHHHHh------------CCHHHHHHHHHHHcC-C
Confidence 3467666555665554321 245788888889999999999998888654 234667777777765 4
Q ss_pred ChhHHHHHHHHHHHHH
Q 005882 95 DTHVKEKILILIDTWQ 110 (672)
Q Consensus 95 d~~VKeKILeLIq~Wa 110 (672)
+..||..++..|..+.
T Consensus 151 ~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 151 DGWVRQSAADALGEIG 166 (201)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 6778887777776653
No 55
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=66.29 E-value=23 Score=30.76 Aligned_cols=56 Identities=20% Similarity=0.153 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHH
Q 005882 37 KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILIL 105 (672)
Q Consensus 37 KEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeL 105 (672)
++++..|.+.|.+.++.|...|+..|..+ ++.+.+..|+++++. .+..||..++..
T Consensus 72 ~~a~~~L~~~L~d~~~~VR~~A~~aL~~~------------~~~~a~~~L~~~l~d-~~~~vr~~A~~a 127 (131)
T 1te4_A 72 ERAVEPLIKLLEDDSGFVRSGAARSLEQI------------GGERVRAAMEKLAET-GTGFARKVAVNY 127 (131)
T ss_dssp HHHHHHHHHHHHHCCTHHHHHHHHHHHHH------------CSHHHHHHHHHHTTS-CCTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh------------CcHHHHHHHHHHHhC-CCHHHHHHHHHH
Confidence 45566666666666666666666555432 234556666666643 455666665544
No 56
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=66.10 E-value=26 Score=32.46 Aligned_cols=79 Identities=13% Similarity=0.184 Sum_probs=53.0
Q ss_pred CcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCC
Q 005882 16 GPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPD 95 (672)
Q Consensus 16 ~pDW~~ileICD~In~~~~~aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d 95 (672)
.+||..-...+..+..-. ..+++..|.+.|.+.++.+...|+..|..+ ++.+.+..|+++++. .+
T Consensus 30 ~~~~~vR~~A~~~L~~~~--~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~------------~~~~~~~~L~~~l~~-~~ 94 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIG--DERAVEPLIKALKDEDAWVRRAAADALGQI------------GDERAVEPLIKALKD-ED 94 (211)
T ss_dssp CSSHHHHHHHHHHHHHHC--CGGGHHHHHHHTTCSCHHHHHHHHHHHHHH------------CCGGGHHHHHHHTTC-SS
T ss_pred CCCHHHHHHHHHHHHHhC--CccHHHHHHHHHcCCCHHHHHHHHHHHHhh------------CCHHHHHHHHHHHcC-CC
Confidence 457766666565554322 246788888888888888888888777543 234566777777754 46
Q ss_pred hhHHHHHHHHHHHH
Q 005882 96 THVKEKILILIDTW 109 (672)
Q Consensus 96 ~~VKeKILeLIq~W 109 (672)
..||..++..|...
T Consensus 95 ~~vr~~a~~aL~~~ 108 (211)
T 3ltm_A 95 GWVRQSAAVALGQI 108 (211)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 77887777766554
No 57
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=65.20 E-value=24 Score=35.49 Aligned_cols=92 Identities=13% Similarity=0.142 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcc---hHHHHHHHHHhc-cCC
Q 005882 19 WAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAE---KNVLHEMVKIAR-KKP 94 (672)
Q Consensus 19 W~~ileICD~In~~~~~aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVas---k~FLneLvKLvk-~k~ 94 (672)
.+.+.=||++.+..-...+.+...|++=|.+.+.. .+.+|=.++++||..+...-+. ..+++.|.+++. .+.
T Consensus 147 lg~i~FIgeLy~~~~l~~~i~~~~l~~Ll~~~~e~----~iE~l~~lL~tvG~~L~~~~~~~~l~~~f~~l~~~~~~~~l 222 (260)
T 1hu3_A 147 IGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDEE----SLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERKT 222 (260)
T ss_dssp HHHHHHHHHHHTTTCSCHHHHHHHHHHHHHSCSHH----HHHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHSCSS
T ss_pred HhHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhCCCC
Confidence 35666699999998888888888888778877765 5666777777889887653332 335555555554 346
Q ss_pred ChhHHHHHHHHHHHHHHHhC
Q 005882 95 DTHVKEKILILIDTWQEAFG 114 (672)
Q Consensus 95 d~~VKeKILeLIq~WaeaF~ 114 (672)
+.+||-.|..+|..-...+.
T Consensus 223 s~Rirfmi~~l~dLR~~~W~ 242 (260)
T 1hu3_A 223 SSRIRFMLQDVIDLRLCNWV 242 (260)
T ss_dssp CHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHHHcCCC
Confidence 77888888888776555444
No 58
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=64.66 E-value=15 Score=38.63 Aligned_cols=71 Identities=8% Similarity=0.114 Sum_probs=57.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 005882 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTW 109 (672)
Q Consensus 39 AvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~W 109 (672)
|+..|.+-|.+.++.++..|...|-.|..+........|.+...+..|++++....+..+++.++..|...
T Consensus 128 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nL 198 (354)
T 3nmw_A 128 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNL 198 (354)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 47788888999999999999999999987644556777888889999999865545788998887776433
No 59
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=64.49 E-value=23 Score=36.22 Aligned_cols=75 Identities=12% Similarity=0.141 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhcc-ccchhhhhcchHHHHHHHHHhccCC-ChhHHHHHHHHHHHHH
Q 005882 35 QAKDVVKGIKKRIGSR--NSKVQLLALTLLETIIKNC-GDIVHMHVAEKNVLHEMVKIARKKP-DTHVKEKILILIDTWQ 110 (672)
Q Consensus 35 ~aKEAvRaLrKRLksk--np~vqLlALtLLEtcVKNC-G~~Fh~eVask~FLneLvKLvk~k~-d~~VKeKILeLIq~Wa 110 (672)
.-.+.+..|...+.+. ++.+...||.+|..+++.+ +..+...+ ..++..+.+++.... +..||..++..+..|.
T Consensus 125 ~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~ 202 (462)
T 1ibr_B 125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--NEILTAIIQGMRKEEPSNNVKLAATNALLNSL 202 (462)
T ss_dssp CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH--HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 3467888888888888 9999999999999999988 44333222 246677777776543 6899999999888875
Q ss_pred H
Q 005882 111 E 111 (672)
Q Consensus 111 e 111 (672)
.
T Consensus 203 ~ 203 (462)
T 1ibr_B 203 E 203 (462)
T ss_dssp T
T ss_pred H
Confidence 4
No 60
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=64.09 E-value=23 Score=36.25 Aligned_cols=72 Identities=15% Similarity=0.177 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHH---HHHHHHhccCCChhHHHHHHHHHHHHHHH
Q 005882 36 AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVL---HEMVKIARKKPDTHVKEKILILIDTWQEA 112 (672)
Q Consensus 36 aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FL---neLvKLvk~k~d~~VKeKILeLIq~Waea 112 (672)
+.-....|..-++|+|.++-.-+|.+|..++.+.|..+ .+.+ ..+.+++.. .|..||+-++..|-+-...
T Consensus 165 ~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~------~~~l~~~~~ia~ll~D-~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 165 PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP------LKSLSVEKTVAPFVGD-KDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG------GGGGCHHHHHGGGGGC-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc------cccccchHHHHHHHcC-CCHHHHHHHHHHHHHHHHH
Confidence 44456666677889999999999999999999999873 2355 777787776 6889999998888765555
Q ss_pred hC
Q 005882 113 FG 114 (672)
Q Consensus 113 F~ 114 (672)
.+
T Consensus 238 ~G 239 (266)
T 2of3_A 238 EG 239 (266)
T ss_dssp HT
T ss_pred hh
Confidence 44
No 61
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=63.50 E-value=25 Score=35.96 Aligned_cols=73 Identities=5% Similarity=0.031 Sum_probs=56.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 005882 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (672)
Q Consensus 38 EAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~Wae 111 (672)
.++..|.+.|++.++.++..|+..|-.+..++.......+.+...+..|++++... +.+|++.++..|.....
T Consensus 318 ~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 318 NIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVM-DSKIVQVALNGLENILR 390 (450)
T ss_dssp THHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSS-CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 35567778888889999999999998888775433333455667888899988864 78999999888877665
No 62
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=62.28 E-value=15 Score=39.32 Aligned_cols=74 Identities=11% Similarity=0.084 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 005882 37 KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (672)
Q Consensus 37 KEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~Wa 110 (672)
.+.+..|.+.|.+.++.+++.|+..|..++..........+.....+..|+++++...+..|+..++..|....
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~ 146 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIA 146 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 45688899999999999999999999888876653445556667889999999887545788877776665544
No 63
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=62.06 E-value=24 Score=39.09 Aligned_cols=71 Identities=18% Similarity=0.163 Sum_probs=56.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 005882 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (672)
Q Consensus 39 AvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~Wae 111 (672)
++..|.+-|++.++.++..|+..|-.|..+.. .....|.+...+..|+++++.. +.+++..++..|..|+.
T Consensus 99 ~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~-~~~~~v~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 99 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQILAY 169 (644)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHST-THHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc-hhHHHHHHCCChHHHHHHHCcC-CHHHHHHHHHHHHHHHh
Confidence 56677788889999999999999999888753 3445666778999999999874 56788888888888874
No 64
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=61.61 E-value=20 Score=35.70 Aligned_cols=71 Identities=17% Similarity=0.177 Sum_probs=58.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 005882 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (672)
Q Consensus 39 AvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~Wa 110 (672)
++..|.+-|++.++.+|..|...|..|...+ ......|.+...+..|+++++...+.+|++.+...|....
T Consensus 53 ~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~-~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS 123 (233)
T 3tt9_A 53 GILKLLQLLKVQNEDVQRAVCGALRNLVFED-NDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLS 123 (233)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 5778888999999999999999999998743 3456678888899999999986567899999887765554
No 65
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=60.82 E-value=35 Score=38.29 Aligned_cols=91 Identities=9% Similarity=0.136 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccC-CChhHHHHHHHHHHHHHHHhCC
Q 005882 37 KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKK-PDTHVKEKILILIDTWQEAFGG 115 (672)
Q Consensus 37 KEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k-~d~~VKeKILeLIq~WaeaF~~ 115 (672)
...+..|.+.|++.++.+...|+.++..+++.||..|...+ .+++..|.+.+... .+..||..++..+..-...++.
T Consensus 638 ~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~ 715 (861)
T 2bpt_A 638 ETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA 715 (861)
T ss_dssp HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhh
Confidence 45667778888888888999999999999999998765433 35666666666543 4578999999999888888764
Q ss_pred CCCChh-HHHHHHHHHHH
Q 005882 116 PRARYP-QYYAAYQELLR 132 (672)
Q Consensus 116 ~~~~~p-~~~~aY~~Lkr 132 (672)
.+. .+..+...|.+
T Consensus 716 ---~~~~~l~~~l~~l~~ 730 (861)
T 2bpt_A 716 ---DFIPYLNDIMALCVA 730 (861)
T ss_dssp ---GGHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHH
Confidence 233 33444444443
No 66
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=60.41 E-value=69 Score=36.52 Aligned_cols=57 Identities=21% Similarity=0.163 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhcc
Q 005882 34 GQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARK 92 (672)
Q Consensus 34 ~~aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~ 92 (672)
..-.+++..|.+.|++.++.++..|+..|..++++|+..+...+ ..++..|.++++.
T Consensus 438 ~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l--~~ll~~L~~~l~~ 494 (852)
T 4fdd_A 438 TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSK 494 (852)
T ss_dssp TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH--HHHHHHHHHHHHH
Confidence 34578899999999999999999999999999999998765433 5677777777764
No 67
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=60.13 E-value=48 Score=37.21 Aligned_cols=77 Identities=13% Similarity=0.171 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccc-cchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhC
Q 005882 36 AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCG-DIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFG 114 (672)
Q Consensus 36 aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG-~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~WaeaF~ 114 (672)
-...+..|...|.+.+.++...|+..|..+...|+ +.+...+ ..++..|.+.++. .+..||..++..|..|.+.+.
T Consensus 364 ~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~ 440 (876)
T 1qgr_A 364 VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhCc
Confidence 45677778888899999999999999999999887 3343222 3455556666654 568999999999999999875
Q ss_pred C
Q 005882 115 G 115 (672)
Q Consensus 115 ~ 115 (672)
.
T Consensus 441 ~ 441 (876)
T 1qgr_A 441 E 441 (876)
T ss_dssp G
T ss_pred h
Confidence 3
No 68
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=60.08 E-value=22 Score=38.08 Aligned_cols=73 Identities=8% Similarity=0.048 Sum_probs=57.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccc--chhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q 005882 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGD--IVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEA 112 (672)
Q Consensus 39 AvRaLrKRLksknp~vqLlALtLLEtcVKNCG~--~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~Waea 112 (672)
++..|.+-|.+.++.++..|+..|..|...+.. .....+.....+..|+.++.. .+..|+..++..|..+...
T Consensus 384 ~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~al~aL~~l~~~ 458 (530)
T 1wa5_B 384 LIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI-ADNRIIEVTLDALENILKM 458 (530)
T ss_dssp CHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT-CCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHHh
Confidence 455666777788999999999999999988764 444455566788889998876 4789999999888777654
No 69
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=58.84 E-value=12 Score=39.78 Aligned_cols=68 Identities=15% Similarity=0.103 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 005882 37 KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTW 109 (672)
Q Consensus 37 KEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~W 109 (672)
...+..|.+.+++.++.|...++..|..+++.+|..|.. ..|+..|.+++.. .+..||+.+.+.+...
T Consensus 518 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~~~p~l~~l~~d-~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 518 KHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQ----SEVKPILEKLTQD-QDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHH----HHHHHHHHHHTTC-SSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhH----HHHHHHHHHHcCC-CchhHHHHHHHHHHHh
Confidence 456667778888889999999999999999988876542 4566667776543 5788998888777643
No 70
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=58.67 E-value=20 Score=41.36 Aligned_cols=73 Identities=11% Similarity=0.128 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 005882 36 AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTW 109 (672)
Q Consensus 36 aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~W 109 (672)
+..++..|.+-|.+.++.++..|+..|-.|.++.. .-+..+....++..|+++++...+..||..++..|...
T Consensus 148 ~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~-~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~L 220 (780)
T 2z6g_A 148 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNL 220 (780)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHH-HHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCCh-hHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 35678888888899999999999999999988753 23344446689999999998666888888888777664
No 71
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=56.49 E-value=1.2e+02 Score=33.96 Aligned_cols=88 Identities=10% Similarity=0.107 Sum_probs=62.7
Q ss_pred HHHHHHhCC---CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccc----chhhhhcchHHHHHHHHHhccC-CC
Q 005882 24 EICDMLNHD---PGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGD----IVHMHVAEKNVLHEMVKIARKK-PD 95 (672)
Q Consensus 24 eICD~In~~---~~~aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~----~Fh~eVask~FLneLvKLvk~k-~d 95 (672)
.+|+.+... ...-...+..|.+.|++. +++...|...|..++++|+. .+...+ ..++..|.++++.. .+
T Consensus 437 ~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~ 513 (861)
T 2bpt_A 437 RIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNE 513 (861)
T ss_dssp HHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCG
T ss_pred HHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcc
Confidence 355555432 345678888898999876 99999999999999999973 232222 45667777777643 33
Q ss_pred hhHHHHHHHHHHHHHHHhC
Q 005882 96 THVKEKILILIDTWQEAFG 114 (672)
Q Consensus 96 ~~VKeKILeLIq~WaeaF~ 114 (672)
..||..+++.|.......+
T Consensus 514 ~~vr~~a~~al~~l~~~~~ 532 (861)
T 2bpt_A 514 FNARASAFSALTTMVEYAT 532 (861)
T ss_dssp GGHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHcc
Confidence 6899888888888877765
No 72
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=56.35 E-value=20 Score=39.98 Aligned_cols=80 Identities=15% Similarity=0.147 Sum_probs=51.7
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHH
Q 005882 22 NIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEK 101 (672)
Q Consensus 22 ileICD~In~~~~~aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeK 101 (672)
-+.++.+++.+++-..-++..|+|-|+++|+.+..+||..|-.+. .. +++ +.++..+.++++. .++.||++
T Consensus 91 Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~---~~----~~~-~~l~~~l~~~L~~-~~~~VRk~ 161 (618)
T 1w63_A 91 YLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG---SS----EMC-RDLAGEVEKLLKT-SNSYLRKK 161 (618)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC---CH----HHH-HHHHHHHHHHHHS-CCHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC---CH----HHH-HHHHHHHHHHHcC-CCHHHHHH
Confidence 345555665555556678888999999999988888887775442 11 222 3456666666654 46777777
Q ss_pred HHHHHHHHH
Q 005882 102 ILILIDTWQ 110 (672)
Q Consensus 102 ILeLIq~Wa 110 (672)
++..+....
T Consensus 162 A~~al~~l~ 170 (618)
T 1w63_A 162 AALCAVHVI 170 (618)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766665443
No 73
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=56.28 E-value=28 Score=40.13 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=57.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 005882 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (672)
Q Consensus 39 AvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~Wae 111 (672)
++..|.+-|++.++.++..|+..|-.|..+.. .....|.+...+..|+++++. .+.+|++.++..|..|..
T Consensus 235 ~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~-~~~~~v~~~g~v~~Lv~lL~~-~~~~v~~~a~~aL~~La~ 305 (780)
T 2z6g_A 235 GIPALVNMLGSPVDSVLFHAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAY 305 (780)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHST-THHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCh-hhHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhc
Confidence 56667778888999999999999999988753 345556667788999999986 567899999999999984
No 74
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=55.78 E-value=48 Score=35.11 Aligned_cols=73 Identities=11% Similarity=0.174 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhC
Q 005882 37 KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFG 114 (672)
Q Consensus 37 KEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~WaeaF~ 114 (672)
...+..|.+.|++.+..|...|+..|..+++.+|..|+ -..++..|.+++.. .+..||..++..|....+.+.
T Consensus 440 ~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~----~~~llp~l~~~~~~-~~~~~R~~a~~~l~~l~~~~~ 512 (588)
T 1b3u_A 440 EKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA----HATIIPKVLAMSGD-PNYLHRMTTLFCINVLSEVCG 512 (588)
T ss_dssp HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHH----HHHTHHHHHHTTTC-SCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhH----HHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHhcC
Confidence 45677777778888888888888888888888877654 24566666665543 456888888888888777664
No 75
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=55.67 E-value=18 Score=38.83 Aligned_cols=70 Identities=14% Similarity=0.230 Sum_probs=51.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccc----------hhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHH
Q 005882 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDI----------VHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDT 108 (672)
Q Consensus 39 AvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~----------Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~ 108 (672)
++..|..-|.+.++.++..|+..|..+++.|... +...|.+...++.|..|.. ..+..|+++++.+|..
T Consensus 429 ~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~-~~~~~v~~~a~~il~~ 507 (530)
T 1wa5_B 429 CIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQ-NENDKIYEKAYKIIET 507 (530)
T ss_dssp CHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGG-CSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHc-CCCHHHHHHHHHHHHH
Confidence 5667777788899999999999999999877532 3344555556667777654 4678899999988864
Q ss_pred H
Q 005882 109 W 109 (672)
Q Consensus 109 W 109 (672)
.
T Consensus 508 ~ 508 (530)
T 1wa5_B 508 Y 508 (530)
T ss_dssp H
T ss_pred H
Confidence 3
No 76
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=54.79 E-value=38 Score=35.56 Aligned_cols=71 Identities=18% Similarity=0.163 Sum_probs=57.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 005882 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (672)
Q Consensus 39 AvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~Wae 111 (672)
++..|.+-|++.++.++..|+..|-.|..+.. .....|.+...+..|+++++. .+.+|+..++..+..|+.
T Consensus 102 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~~~~L~~la~ 172 (529)
T 1jdh_A 102 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAY 172 (529)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCT-THHHHHHHHTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-chHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHh
Confidence 56677888899999999999999998887653 234566677899999999986 467888888888888874
No 77
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=54.77 E-value=36 Score=37.97 Aligned_cols=57 Identities=12% Similarity=0.067 Sum_probs=37.3
Q ss_pred cCHHHHHHHHHHHhCCCCCH---HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccch
Q 005882 17 PDWAMNIEICDMLNHDPGQA---KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIV 73 (672)
Q Consensus 17 pDW~~ileICD~In~~~~~a---KEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~F 73 (672)
.+.+.+.+.+..|-.-...+ +.|+..|.+-|.++++++.+.||..|..++......|
T Consensus 289 ~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~ 348 (618)
T 1w63_A 289 VGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAV 348 (618)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHH
Confidence 34455555555443322122 2477788888899999999999999888887654433
No 78
>3f1i_S STAM-1, signal transducing adapter molecule 1; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=54.53 E-value=47 Score=28.25 Aligned_cols=68 Identities=18% Similarity=0.268 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhcCCCCh--H-HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhhhhHHHHHHHHHHHhhhc
Q 005882 195 IMDVLAEMLNALDPNNK--E-EVIVDLVDQCRTYKQRVVHLVNSTADESLLCQGLQLNDDLQRLLAKHESFAS 264 (672)
Q Consensus 195 nvkLL~EML~~l~P~~~--e-Eli~EL~~qCR~mr~RV~rLIq~t~DEElL~eLL~lNDeLn~VLekYE~l~~ 264 (672)
.++.+-.+|...+|... + ..+-+|=..|.+|=+-|=.=++.++-. =.+|=++|..|..+|+.|..+..
T Consensus 6 kmd~~L~~l~~aDP~~~~~D~~el~~LE~~c~~MgplId~kLE~iDrk--h~~Lteln~~~leaL~lY~~lM~ 76 (77)
T 3f1i_S 6 KMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDIDRK--HSELSELNVKVMEALSLYTKLMN 76 (77)
T ss_dssp HHHHHHHHHHTCCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555677888888754 2 778889999999988885555555322 24567899999999999998753
No 79
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=54.38 E-value=35 Score=37.84 Aligned_cols=73 Identities=11% Similarity=0.132 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 005882 36 AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTW 109 (672)
Q Consensus 36 aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~W 109 (672)
...++..|.+.|++.++.++..|+..|-.|.++.. .....+.....+..|+++++...+..|+..++..|...
T Consensus 12 ~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~L 84 (644)
T 2z6h_A 12 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 84 (644)
T ss_dssp CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred hhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 34467888888999999999999999999998764 33334455688999999988766788888888777654
No 80
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=53.76 E-value=24 Score=31.20 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=19.8
Q ss_pred CChhHHHHHHHHHHHHHHHhCC
Q 005882 94 PDTHVKEKILILIDTWQEAFGG 115 (672)
Q Consensus 94 ~d~~VKeKILeLIq~WaeaF~~ 115 (672)
.+.+|+..+..||..|......
T Consensus 67 ~~~~V~~lAk~Lv~~WK~~v~~ 88 (103)
T 1wjt_A 67 SDKEVVSLAKVLIKNWKRLLDS 88 (103)
T ss_dssp CCSHHHHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999998764
No 81
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=53.08 E-value=43 Score=38.27 Aligned_cols=75 Identities=13% Similarity=0.117 Sum_probs=61.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCC
Q 005882 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGG 115 (672)
Q Consensus 38 EAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~WaeaF~~ 115 (672)
..+..|.+.+.++++.+..-|+.+|..|++.||..|...+. .|+.-|.+.+.. .+..|+.-++..|......+..
T Consensus 629 ~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~--~~lp~l~~~l~~-~~~~v~~~a~~alg~i~~~~~~ 703 (852)
T 4fdd_A 629 NILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA--DFMPILGTNLNP-EFISVCNNATWAIGEISIQMGI 703 (852)
T ss_dssp CHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH--HHHHHHHHTCCT-TSHHHHHHHHHHHHHHHHHHGG
T ss_pred cHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHH--HHHHHHHHHcCc-cchHHHHHHHHHHHHHHHHhhH
Confidence 45788888899999999999999999999999988776554 377777777743 4678999898888888887753
No 82
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=52.90 E-value=38 Score=35.55 Aligned_cols=73 Identities=11% Similarity=0.132 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 005882 36 AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTW 109 (672)
Q Consensus 36 aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~W 109 (672)
...++..|.+.|++.++.++..|+.+|..+..+.. .....+.....+..|+++++...+..|+..++..|...
T Consensus 15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~-~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~l 87 (529)
T 1jdh_A 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 87 (529)
T ss_dssp --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHH-HHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCc-cHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 45578889999999999999999999999987653 22334455678899999887666788888888877764
No 83
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=52.24 E-value=20 Score=40.62 Aligned_cols=69 Identities=16% Similarity=0.103 Sum_probs=55.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHH
Q 005882 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILID 107 (672)
Q Consensus 39 AvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq 107 (672)
++..|.+-|++.++.++..|...|-.|...++......|.+...+..|+++++...+..|++.+...|.
T Consensus 91 ~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~ 159 (584)
T 3l6x_A 91 GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLW 159 (584)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred CcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 566778888999999999999999999986656778888888999999999987556667766654443
No 84
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=52.16 E-value=1.2e+02 Score=34.00 Aligned_cols=97 Identities=10% Similarity=0.028 Sum_probs=68.4
Q ss_pred CCcCHHHHHHHHHHHhCCCCC---------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccch-hhhhcchHHHH
Q 005882 15 IGPDWAMNIEICDMLNHDPGQ---------AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIV-HMHVAEKNVLH 84 (672)
Q Consensus 15 ~~pDW~~ileICD~In~~~~~---------aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~F-h~eVask~FLn 84 (672)
.+++|..-...|..+..=..+ -.+.+..|.+.|++.++.+...|+..|..+.+.|+..+ +..+ -..++.
T Consensus 376 ~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~ 454 (876)
T 1qgr_A 376 KNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQ 454 (876)
T ss_dssp TCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHH
Confidence 346787655555544321111 23567788888999999999999999999999987654 2222 245667
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHHhC
Q 005882 85 EMVKIARKKPDTHVKEKILILIDTWQEAFG 114 (672)
Q Consensus 85 eLvKLvk~k~d~~VKeKILeLIq~WaeaF~ 114 (672)
.|.+.+.. +..||..++..|....+.+.
T Consensus 455 ~l~~~l~~--~~~v~~~a~~al~~l~~~~~ 482 (876)
T 1qgr_A 455 CLIEGLSA--EPRVASNVCWAFSSLAEAAY 482 (876)
T ss_dssp HHHHHTTS--CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcC--CHHHHHHHHHHHHHHHHHhh
Confidence 77777765 38899999999988888764
No 85
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=51.90 E-value=39 Score=37.27 Aligned_cols=87 Identities=9% Similarity=0.109 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhCCCCCHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCCh
Q 005882 19 WAMNIEICDMLNHDPGQAK--DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDT 96 (672)
Q Consensus 19 W~~ileICD~In~~~~~aK--EAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~ 96 (672)
...++.+..+.+..++... +.+..|++.|.++++.|+..|+.+|..+.++........+ ...++..|.+.+.. .++
T Consensus 139 k~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l-~~~~~~~Ll~~l~~-~~~ 216 (591)
T 2vgl_B 139 KTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDL-NPQNINKLLTALNE-CTE 216 (591)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCC-HHHHHHHHHHHHHH-CCH
T ss_pred HHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhc-cHHHHHHHHHcCCC-CCc
Confidence 4456667777777777665 4788999999999999999999999888776543311111 12333344333332 345
Q ss_pred hHHHHHHHHHH
Q 005882 97 HVKEKILILID 107 (672)
Q Consensus 97 ~VKeKILeLIq 107 (672)
-++-++++++.
T Consensus 217 ~~q~~il~~l~ 227 (591)
T 2vgl_B 217 WGQIFILDCLS 227 (591)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 55555555553
No 86
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=51.29 E-value=29 Score=37.92 Aligned_cols=73 Identities=8% Similarity=0.112 Sum_probs=57.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 005882 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (672)
Q Consensus 38 EAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~Wa 110 (672)
.++..|.+.|.+.++.++..|...|-.|..+........|.+...+..|++++....+..|++.++..|....
T Consensus 243 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs 315 (458)
T 3nmz_A 243 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS 315 (458)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHc
Confidence 3577888889999999999999999888775444566777777889999998665557889998887764444
No 87
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=50.93 E-value=53 Score=34.99 Aligned_cols=73 Identities=15% Similarity=0.199 Sum_probs=59.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 005882 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (672)
Q Consensus 38 EAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~Wae 111 (672)
.++..|.+-|++.++.++..|...|-.|... .......|.+..-+..|++++++..+.+|++.+...|..-+.
T Consensus 44 g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~-~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~ 116 (457)
T 1xm9_A 44 GGICKLVDLLRSPNQNVQQAAAGALRNLVFR-STTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSS 116 (457)
T ss_dssp THHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhc
Confidence 3567788999999999999999999999874 245666777778899999999865688999998877766553
No 88
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=50.82 E-value=25 Score=38.02 Aligned_cols=70 Identities=14% Similarity=0.317 Sum_probs=49.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccc-----chhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 005882 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGD-----IVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTW 109 (672)
Q Consensus 39 AvRaLrKRLksknp~vqLlALtLLEtcVKNCG~-----~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~W 109 (672)
+++.|..-|.+++++++..+|..|+.+++-+.. .|...|-+...++.|..|.. ..+.+|.+|++.+|..+
T Consensus 402 ~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~-~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 402 IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR-HENESVYKASLNLIEKY 476 (510)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGG-CSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHc-CCCHHHHHHHHHHHHHH
Confidence 455556667889999999999999888764422 23444444556666666544 46789999999999776
No 89
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=50.62 E-value=39 Score=37.30 Aligned_cols=75 Identities=9% Similarity=0.141 Sum_probs=57.7
Q ss_pred CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 005882 32 DPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (672)
Q Consensus 32 ~~~~aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~Wae 111 (672)
.++-....+..|++-|.+.++.|...|...|-.+.+.+.+.+. ..+|++.|.+++.. .++.|+.-++.+|.....
T Consensus 115 ~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~----~~~~~~~l~~lL~d-~d~~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 115 VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE----DQGFLDSLRDLIAD-SNPMVVANAVAALSEISE 189 (591)
T ss_dssp SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH----HHHHHHHHHHTTSC-SCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc----cccHHHHHHHHhCC-CChhHHHHHHHHHHHHHh
Confidence 3344566777799999999999999999888888886644332 24799999999875 578899888888877654
No 90
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=47.66 E-value=52 Score=31.81 Aligned_cols=21 Identities=5% Similarity=0.153 Sum_probs=10.5
Q ss_pred HHHHHHHhhcCCCHHHHHHHh
Q 005882 226 KQRVVHLVNSTADESLLCQGL 246 (672)
Q Consensus 226 r~RV~rLIq~t~DEElL~eLL 246 (672)
-+.|..++....|++++.+++
T Consensus 254 ~~~L~~~l~~~~~~~~~~~~~ 274 (280)
T 1oyz_A 254 LPVLDTMLYKFDDNEIITSAI 274 (280)
T ss_dssp HHHHHHHHTTSSCCHHHHHHH
T ss_pred hHHHHHHHhcCCCcHHHHHHH
Confidence 344555555555555555443
No 91
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=47.35 E-value=59 Score=31.39 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHH
Q 005882 36 AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILID 107 (672)
Q Consensus 36 aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq 107 (672)
..+++..|.+.|++.++.+...|+..|..+ ++.+.+..|.++++.. .|+..+++.|.
T Consensus 190 ~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~------------~~~~~~~~L~~~l~d~---~vr~~a~~aL~ 246 (280)
T 1oyz_A 190 NSDIRDCFVEMLQDKNEEVRIEAIIGLSYR------------KDKRVLSVLCDELKKN---TVYDDIIEAAG 246 (280)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHT------------TCGGGHHHHHHHHTSS---SCCHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHh------------CCHhhHHHHHHHhcCc---cHHHHHHHHHH
Confidence 345556666666666666666666555322 2455666676666542 25555544443
No 92
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=47.23 E-value=85 Score=30.70 Aligned_cols=74 Identities=14% Similarity=0.169 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHH--------HHHHHHhhc-------------CCCHHHHHHH
Q 005882 188 EIQNARGIMDVLAEMLNALDPNNKE-EVIVDLVDQCRTYK--------QRVVHLVNS-------------TADESLLCQG 245 (672)
Q Consensus 188 ELe~ak~nvkLL~EML~~l~P~~~e-Eli~EL~~qCR~mr--------~RV~rLIq~-------------t~DEElL~eL 245 (672)
-+++++..+..|++.|..+..+..+ +.+.++++...++| ..|.++... .-+.+++.-|
T Consensus 12 F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l~~~r~g~~~~~~~~~~ll 91 (225)
T 2lp4_A 12 FFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNTDIINLF 91 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 3788999999999999887544333 78888888887777 222222221 1488999999
Q ss_pred hhhhHHHHHHHHHHHh
Q 005882 246 LQLNDDLQRLLAKHES 261 (672)
Q Consensus 246 L~lNDeLn~VLekYE~ 261 (672)
|.+.|.|...|+.++.
T Consensus 92 ~~~~D~l~~~l~~~~~ 107 (225)
T 2lp4_A 92 LETKDIMQEQLDAYKN 107 (225)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999999977653
No 93
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=46.87 E-value=94 Score=28.64 Aligned_cols=73 Identities=18% Similarity=0.230 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHH--------HHHHHHhh-----------c--CCCHHHHHHHh
Q 005882 189 IQNARGIMDVLAEMLNALDPNNKE-EVIVDLVDQCRTYK--------QRVVHLVN-----------S--TADESLLCQGL 246 (672)
Q Consensus 189 Le~ak~nvkLL~EML~~l~P~~~e-Eli~EL~~qCR~mr--------~RV~rLIq-----------~--t~DEElL~eLL 246 (672)
+++++..+..|++.|..+..+..+ +.+.+++....++| ..|.++.. . .-+.+++..||
T Consensus 17 leEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll~~lr~g~~~~~~~l~dlll 96 (144)
T 3kyj_A 17 ADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIGLVRDAGVPMDGEIVEILL 96 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 677888888888887766433223 77777777776666 22222211 1 24788999999
Q ss_pred hhhHHHHHHHHHHHh
Q 005882 247 QLNDDLQRLLAKHES 261 (672)
Q Consensus 247 ~lNDeLn~VLekYE~ 261 (672)
.+-|.|...++.++.
T Consensus 97 ~~~D~l~~lv~~~~~ 111 (144)
T 3kyj_A 97 FASDTLRAMLEETAA 111 (144)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999987775
No 94
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=46.77 E-value=57 Score=37.54 Aligned_cols=74 Identities=11% Similarity=0.196 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhc-chHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 005882 37 KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVA-EKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (672)
Q Consensus 37 KEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVa-sk~FLneLvKLvk~k~d~~VKeKILeLIq~Wae 111 (672)
.+.+..|-.-|++.+.++-++||.+|+.|..|++.+++..|- ...=+..|+.+++.. ...||...+.+|.....
T Consensus 121 ~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~-rE~iRneallLL~~Lt~ 195 (651)
T 3grl_A 121 QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS-REVIRNDGVLLLQALTR 195 (651)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS-SHHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc-hHHHHHHHHHHHHHHhc
Confidence 366778888889999999999999999999999988888777 346677788888763 57899999988887765
No 95
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=46.72 E-value=45 Score=37.48 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccc
Q 005882 36 AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCG 70 (672)
Q Consensus 36 aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG 70 (672)
.+.|+..|.+=|.++++++++.||..|..++...+
T Consensus 327 ~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~ 361 (621)
T 2vgl_A 327 LVRACNQLGQFLQHRETNLRYLALESMCTLASSEF 361 (621)
T ss_dssp HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccC
Confidence 35678888888889999999999999988887653
No 96
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=45.14 E-value=23 Score=38.44 Aligned_cols=70 Identities=13% Similarity=0.318 Sum_probs=47.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccc-----cchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 005882 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCG-----DIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTW 109 (672)
Q Consensus 39 AvRaLrKRLksknp~vqLlALtLLEtcVKNCG-----~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~W 109 (672)
+++.|.+-|.+++++++..+|..|+.+.+-.. ..|...|-+-..++.|..|. ...+.+|.+|++.+|..|
T Consensus 421 ~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq-~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 421 IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ-RHENESVYKASLNLIEKY 495 (529)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGG-GCSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHH-cCCCHHHHHHHHHHHHHH
Confidence 45666667788999999999999988875331 12333333334455555544 346789999999999876
No 97
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=45.12 E-value=56 Score=35.32 Aligned_cols=72 Identities=15% Similarity=0.090 Sum_probs=49.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 005882 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTW 109 (672)
Q Consensus 38 EAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~W 109 (672)
+.+..|.+.|++.++.+|+.|+.-+..|..+....-..+|.+...+..|+++++...+..++..++..|...
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~ni 147 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNI 147 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 356777788888888888888888776665443333345666678888888887666666766555554443
No 98
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=43.93 E-value=85 Score=31.84 Aligned_cols=85 Identities=12% Similarity=0.141 Sum_probs=54.5
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHhccccchhhhhc--------chHHHHH---
Q 005882 21 MNIEICDMLNHDPGQAKDVVKGIKKRIG----SRNSKVQLLALTLLETIIKNCGDIVHMHVA--------EKNVLHE--- 85 (672)
Q Consensus 21 ~ileICD~In~~~~~aKEAvRaLrKRLk----sknp~vqLlALtLLEtcVKNCG~~Fh~eVa--------sk~FLne--- 85 (672)
.+.=||++.+..-...+.+...|++-|. ..+.. .|++|=.|+++||..+...-. .+..|+.
T Consensus 176 ~i~FIgeLyk~~~l~~~i~~~ci~~LL~~~~~~p~e~----~iE~l~~lL~tvG~~Ld~~~~~~~~~~~~~~~~md~~f~ 251 (284)
T 2vso_E 176 LVRFIGFLYRLNLLTGKMMFECFRRLMKDLTDSPSEE----TLESVVELLNTVGEQFETDSFRTGQATLEGSQLLDSLFG 251 (284)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHSCCCHH----HHHHHHHHHHHHHHHHTSCC--------CHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHhccCCCCCCHH----HHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHH
Confidence 3555889998877777766666666564 45544 466666677778987764431 1345554
Q ss_pred -HHHHhc-cCCChhHHHHHHHHHHHH
Q 005882 86 -MVKIAR-KKPDTHVKEKILILIDTW 109 (672)
Q Consensus 86 -LvKLvk-~k~d~~VKeKILeLIq~W 109 (672)
|.+++. .+.+.+||-.|..+|..-
T Consensus 252 ~l~~l~~~~~ls~RirFml~dlidLR 277 (284)
T 2vso_E 252 ILDNIIQTAKISSRIKFKLIDIKELR 277 (284)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 445554 356778888888887643
No 99
>1o5h_A Formiminotetrahydrofolate cyclodeaminase; TM1560, structural genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 2.80A {Thermotoga maritima} SCOP: a.191.1.1
Probab=42.69 E-value=56 Score=32.54 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCCCh-----HHHHHHHHHHHHHHHHHHHHHhhc
Q 005882 197 DVLAEMLNALDPNNK-----EEVIVDLVDQCRTYKQRVVHLVNS 235 (672)
Q Consensus 197 kLL~EML~~l~P~~~-----eEli~EL~~qCR~mr~RV~rLIq~ 235 (672)
--|..|+.+++-+.+ ++.++++.++|+.+|.++++|+.+
T Consensus 48 aAL~~MVanLT~gKkky~~~e~~~~~i~~~~~~l~~~ll~l~d~ 91 (214)
T 1o5h_A 48 CALAEMVANFTRKKKGYEDVEPEMERIVEAMEEARLKLFDLAKK 91 (214)
T ss_dssp HHHHHHHHHTTTTCTTCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789998877754 288999999999999999999863
No 100
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=41.62 E-value=78 Score=27.97 Aligned_cols=66 Identities=9% Similarity=0.200 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHH-HhcCCCC---hHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhhhhHHHHHHH
Q 005882 189 IQNARGIMDVLAEML-NALDPNN---KEEVIVDLVDQCRTYKQRVVHLVNSTADESLLCQGLQLNDDLQRLL 256 (672)
Q Consensus 189 Le~ak~nvkLL~EML-~~l~P~~---~eEli~EL~~qCR~mr~RV~rLIq~t~DEElL~eLL~lNDeLn~VL 256 (672)
++..+..+++|.+=+ ++...|. .|..++.||.+.-.|.++|+++|+..+|.- ...=.+.|.|..+=
T Consensus 6 ~~~l~~sv~if~NRmksn~~RGrsi~nDssVQsLF~~lt~MH~~Ll~~i~~~ee~R--~~yE~LQDkL~qi~ 75 (98)
T 3f1i_H 6 LKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGMHPQLLELLNQLDERR--LYYEGLQDKLAQIR 75 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 667888888887744 4443343 248999999999999999999998764432 22223445555443
No 101
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=41.37 E-value=19 Score=38.29 Aligned_cols=64 Identities=23% Similarity=0.149 Sum_probs=38.4
Q ss_pred HHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcc
Q 005882 6 VDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNC 69 (672)
Q Consensus 6 IekATse~l~~pDW~~ileICD~In~~~~~aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNC 69 (672)
|.+|-.+...----..++.+..++...++-.+.-+..++.-|.++|+-|++.||.+|..+-++-
T Consensus 144 lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 144 MKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence 3344333333333344455555555555545555556666677888888888888888776654
No 102
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=40.80 E-value=1.8e+02 Score=26.47 Aligned_cols=74 Identities=14% Similarity=0.165 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHH-------------------HHHHHHhhc--CCCHHHHHHH
Q 005882 188 EIQNARGIMDVLAEMLNALDPNNKE-EVIVDLVDQCRTYK-------------------QRVVHLVNS--TADESLLCQG 245 (672)
Q Consensus 188 ELe~ak~nvkLL~EML~~l~P~~~e-Eli~EL~~qCR~mr-------------------~RV~rLIq~--t~DEElL~eL 245 (672)
-++++...+..|++.|..+..+..+ +.+.+++..+.++| ..+-++-.. ..+.+++..|
T Consensus 12 Fl~Ea~e~L~~le~~L~~le~~~~d~~~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~~~~~~~l~~~l 91 (146)
T 1i5n_A 12 FFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNTDIINLF 91 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 3677778888888878766432212 55666655555544 222111111 2467888889
Q ss_pred hhhhHHHHHHHHHHHh
Q 005882 246 LQLNDDLQRLLAKHES 261 (672)
Q Consensus 246 L~lNDeLn~VLekYE~ 261 (672)
+..-|.|...++.++.
T Consensus 92 ~~~~D~l~~~l~~~~~ 107 (146)
T 1i5n_A 92 LETKDIMQEQLDAYKN 107 (146)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999998877754
No 103
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S
Probab=40.65 E-value=2.3e+02 Score=31.00 Aligned_cols=85 Identities=15% Similarity=0.124 Sum_probs=51.5
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCC------------------------------
Q 005882 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRN------------------------------ 51 (672)
Q Consensus 2 v~~lIekATse~l~~pDW~~ileICD~In~~~~~aKEAvRaLrKRLkskn------------------------------ 51 (672)
++.||++.|++... |-..+-.|--. =+.-..+.|.+..|..|.....
T Consensus 47 L~~LVe~Lt~~~~~--D~~f~~~FLlT-yRsF~tp~eLL~~Li~Ry~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 123 (490)
T 2ii0_A 47 VIKLIERLTYHMYA--DPNFVRTFLTT-YRSFCKPQELLSLIIERFEIPEPEPTEADRIAIENGDQPLSAELKRFRKEYI 123 (490)
T ss_dssp HHHHHHHHTCSSSC--CHHHHHHHHHH-GGGTSCHHHHHHHHHHHHCCCCCCCCHHHHHHHHTTCSCCCHHHHHHHHHTH
T ss_pred HHHHHHHHccCCCC--CHHHHHHHHHH-HHhhCCHHHHHHHHHHHHhccCCCchhhhhhhhccCCccchHHHHHHHHhhh
Confidence 57899999987543 43322222111 1234456777777777765321
Q ss_pred HHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhcc
Q 005882 52 SKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARK 92 (672)
Q Consensus 52 p~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~ 92 (672)
..++++-+.+|..-|.+|...|.. +.+++..|...+..
T Consensus 124 ~~iq~rV~~vl~~Wv~~~~~DF~~---d~~ll~~L~~F~~~ 161 (490)
T 2ii0_A 124 QPVQLRVLNVCRHWVEHHFYDFER---DAYLLQRMEEFIGT 161 (490)
T ss_dssp HHHHHHHHHHHHHHHHHCTHHHHH---CHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHhCcccccc---CHHHHHHHHHHHHh
Confidence 246778888888888888766643 34566666665543
No 104
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=40.02 E-value=54 Score=32.57 Aligned_cols=71 Identities=6% Similarity=0.013 Sum_probs=53.6
Q ss_pred HHHHHHHHhCCCCH--HHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 005882 39 VVKGIKKRIGSRNS--KVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (672)
Q Consensus 39 AvRaLrKRLksknp--~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~Wae 111 (672)
.+..|.+.|.+.++ .+|..|...|-.+.++. ......|.+..-+..|+++++. .+..|++.....|..++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~ 81 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLVF 81 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHh
Confidence 35667778888887 78877776666655443 3456677777888999999986 578999999999888864
No 105
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=39.87 E-value=86 Score=31.22 Aligned_cols=65 Identities=18% Similarity=0.325 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHhhcC---CCHHHHHHHhhhhHHHHHHHH
Q 005882 188 EIQNARGIMDVLAEMLNALDPNNKEEVIVDLVDQCRTYKQRVVHLVNST---ADESLLCQGLQLNDDLQRLLA 257 (672)
Q Consensus 188 ELe~ak~nvkLL~EML~~l~P~~~eEli~EL~~qCR~mr~RV~rLIq~t---~DEElL~eLL~lNDeLn~VLe 257 (672)
+++.+...+.-|.+-+..+. +.+..+......+|+|..+=++.. .-+.++.+||-+-|+|-+||.
T Consensus 60 e~~~l~~~l~~l~~e~~el~-----d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~ 127 (213)
T 4ani_A 60 ELAAAKAQIAELEAKLSEME-----HRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERALK 127 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45554444444444333321 555666677788888888876654 788999999999999999985
No 106
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=39.85 E-value=47 Score=35.46 Aligned_cols=70 Identities=11% Similarity=0.146 Sum_probs=55.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 005882 40 VKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (672)
Q Consensus 40 vRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~Wae 111 (672)
+..|.+.|++.++.++..|+..|..+.++- ......|.+...+..|+++++. .+..|++.....|..+..
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~ 73 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVF 73 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhc
Confidence 566778888899999999999888876543 3455678888899999999985 577899888888887764
No 107
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=39.71 E-value=1.4e+02 Score=35.53 Aligned_cols=75 Identities=16% Similarity=0.292 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHh
Q 005882 36 AKDVVKGIKKRIG-SRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAF 113 (672)
Q Consensus 36 aKEAvRaLrKRLk-sknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~WaeaF 113 (672)
.++.+..|.+.|. +.+..++..||..|-.+++.+|..|...+ .+++..|.+++.. .+..||++++..|.......
T Consensus 131 ~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L~~-~~~~vR~~a~~al~~l~~~~ 206 (1230)
T 1u6g_C 131 CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH--PSILTCLLPQLTS-PRLAVRKRTIIALGHLVMSC 206 (1230)
T ss_dssp HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH--HHHHHHHGGGGGC-SSHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHhc
Confidence 5677777888888 68899999999999999998888665432 4567776666654 46789999888777766543
No 108
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=39.10 E-value=1e+02 Score=33.25 Aligned_cols=70 Identities=13% Similarity=0.063 Sum_probs=54.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 005882 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTW 109 (672)
Q Consensus 39 AvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~W 109 (672)
++..|.+-|.+.+..++..|...|-.+..+|.......+.+...+.-|+.|++. .|.+|+..+|+.|..-
T Consensus 359 ~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~-~d~~i~~~~L~aL~ni 428 (510)
T 3ul1_B 359 LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA-KDTKIIQVILDAISNI 428 (510)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC-CCHHHHHHHHHHHHHH
Confidence 556677788899999999999988888887765555567777888899999876 4778888877766543
No 109
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=38.42 E-value=1.3e+02 Score=29.05 Aligned_cols=71 Identities=14% Similarity=0.130 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChH------HHHHHHHHHHHHHHHHHHHHhhcC----CCHHHHHHHhhhhHHHHHHHHH
Q 005882 189 IQNARGIMDVLAEMLNALDPNNKE------EVIVDLVDQCRTYKQRVVHLVNST----ADESLLCQGLQLNDDLQRLLAK 258 (672)
Q Consensus 189 Le~ak~nvkLL~EML~~l~P~~~e------Eli~EL~~qCR~mr~RV~rLIq~t----~DEElL~eLL~lNDeLn~VLek 258 (672)
.+.+...+.+|.+++.++-.++.+ +.+.++=..+..+++.|..++..+ -|.+. ++.+..+|-++++.
T Consensus 23 a~~~~~~a~~L~~~~~~~~~~d~~~~~~~~~~i~~~E~~aD~l~~~I~~~L~~~~~~P~dred---i~~L~~~lD~I~D~ 99 (227)
T 2olt_A 23 MDKVYDCASLLVPFFEATITGNWDDAVQIRKQISLAEKQGDSLKREIRLTLPSGLFMPVERTD---LLELLTQQDKIANK 99 (227)
T ss_dssp HHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCSCSSCHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCHHH---HHHHHHHHHHHHHH
Confidence 456788899999999875444322 667777889999999999998865 24433 44445555555544
Q ss_pred HHhh
Q 005882 259 HESF 262 (672)
Q Consensus 259 YE~l 262 (672)
-+.+
T Consensus 100 ~~~~ 103 (227)
T 2olt_A 100 AKDI 103 (227)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 110
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=36.82 E-value=1.1e+02 Score=34.36 Aligned_cols=78 Identities=9% Similarity=0.115 Sum_probs=53.6
Q ss_pred HHHHHHHHhCCC-CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHh---cc--CCC
Q 005882 22 NIEICDMLNHDP-GQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIA---RK--KPD 95 (672)
Q Consensus 22 ileICD~In~~~-~~aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLv---k~--k~d 95 (672)
+=|.|+.+...+ ..+.+.++.|.+++...++.++..+|+.+--+...+.+ ..+.+.+++ .. ..+
T Consensus 504 lGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~----------~~~~i~~~l~~~~~~~~~d 573 (621)
T 2vgl_A 504 LGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE----------VKATIQDVLRSDSQLKNAD 573 (621)
T ss_dssp HHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG----------GHHHHHHHHSSHHHHSCSS
T ss_pred hcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH----------HHHHHHHHHHHHhcCCCCC
Confidence 346677776644 34678899999999999999999988887766555432 222333333 33 578
Q ss_pred hhHHHHHHHHHHHH
Q 005882 96 THVKEKILILIDTW 109 (672)
Q Consensus 96 ~~VKeKILeLIq~W 109 (672)
.+||+|..++..-.
T Consensus 574 ~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 574 VELQQRAVEYLRLS 587 (621)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 89999988875543
No 111
>3ayh_A DNA-directed RNA polymerase III subunit RPC9; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=36.56 E-value=38 Score=31.18 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=41.1
Q ss_pred HHHHHHHHhCCCCCH---HHHHHHHHHHhCC----CCHHHHHH-----HHHHHHHHHhccccchhhh
Q 005882 22 NIEICDMLNHDPGQA---KDVVKGIKKRIGS----RNSKVQLL-----ALTLLETIIKNCGDIVHMH 76 (672)
Q Consensus 22 ileICD~In~~~~~a---KEAvRaLrKRLks----knp~vqLl-----ALtLLEtcVKNCG~~Fh~e 76 (672)
..++.+.+++.+... .|+++.|.++|+. +.+..|+. ++..|..||..|..||..+
T Consensus 56 ~~e~l~YL~~~p~~~~q~~e~i~~l~~~L~~~~Ltk~E~LqivNl~P~t~vel~~iIEe~e~Rfsee 122 (136)
T 3ayh_A 56 QFEILKYLSSQGNCEGLTKERFLDCIAIFNEFELTKAEILVILNNKPSSVPELYACIEGIEERFKEE 122 (136)
T ss_dssp HHHHHHHHHTTTCCTTCCHHHHHHHHHTTTTTCCCHHHHHHHHHHCCCSHHHHHHHSTTHHHHHTTT
T ss_pred HHHHHHHHHhCCCccccCHHHHHHHHHHHHhcCCCHHHHHHHhccCCCCHHHHHHHHHhcccCCCHH
Confidence 456888888876544 8999999999974 34555554 4467899999999888743
No 112
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=36.48 E-value=27 Score=29.85 Aligned_cols=36 Identities=11% Similarity=0.150 Sum_probs=27.0
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhc
Q 005882 95 DTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAG 134 (672)
Q Consensus 95 d~~VKeKILeLIq~WaeaF~~~~~~~p~~~~aY~~LkrkG 134 (672)
+..+++++.++|..|....+. -..+..+++.|++-|
T Consensus 50 ~~d~~eq~~~mL~~W~~~~g~----~At~~~L~~AL~~~~ 85 (99)
T 1fad_A 50 PRSLSERVRESLKVWKNAEKK----NASVAGLVKALRTCR 85 (99)
T ss_dssp SSCHHHHHHHHHHHHHHHHGG----GGSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhccCC----CCcHHHHHHHHHHCC
Confidence 346999999999999998743 234667777777654
No 113
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=34.94 E-value=31 Score=31.00 Aligned_cols=70 Identities=10% Similarity=0.186 Sum_probs=41.1
Q ss_pred HHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhcc
Q 005882 62 LETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGA 135 (672)
Q Consensus 62 LEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~WaeaF~~~~~~~p~~~~aY~~LkrkGi 135 (672)
|+.+.+|-|.........-.|-+.=+..++...+..+++++.++|..|.+..+.. ..+..+++-|++-|.
T Consensus 27 l~~Ia~~LG~~Wk~LAR~LGlse~dId~I~~~~p~dl~eq~~qmL~~W~~r~G~~----AT~~~L~~AL~~~~l 96 (115)
T 2o71_A 27 INQLAQRLGPEWEPMVLSLGLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGKQ----ATFQSLHNGLRAVEV 96 (115)
T ss_dssp HHHHHHHCCTTHHHHHHHTTCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHGGG----CCHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCcC----cHHHHHHHHHHHcCC
Confidence 3344555554444322222333333333333334589999999999999987532 346677888887664
No 114
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=34.57 E-value=79 Score=27.26 Aligned_cols=57 Identities=5% Similarity=0.166 Sum_probs=44.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 005882 40 VKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTW 109 (672)
Q Consensus 40 vRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~W 109 (672)
+..|.+.|++.++.+...|+..|.. +++++.+..|+++++. .+..||..++..|...
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~------------~~~~~a~~~L~~~L~d-~~~~VR~~A~~aL~~~ 100 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGN------------FQDERAVEPLIKLLED-DSGFVRSGAARSLEQI 100 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGG------------GCSHHHHHHHHHHHHH-CCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHcC-CCHHHHHHHHHHHHHh
Confidence 6888899999999999998887643 2345678888888865 5778999888777654
No 115
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=34.48 E-value=1.1e+02 Score=31.35 Aligned_cols=70 Identities=16% Similarity=0.194 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 005882 36 AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (672)
Q Consensus 36 aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~Wa 110 (672)
.+.++..|-.=|+++|.+++..||++|-.+..-.+..=| . ++.++++..+++.. |+.+++++|..+..-.
T Consensus 148 ~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i---~-~~I~~eI~elL~~e-D~~l~e~aLd~Le~il 217 (265)
T 3b2a_A 148 SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGH---L-TLILDEIPSLLQND-NEFIVELALDVLEKAL 217 (265)
T ss_dssp CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCC---G-GGTTTTHHHHHTCS-CHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHH---H-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHH
Confidence 567777777778899999999999887666554443322 2 35677888888876 8999999998876543
No 116
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=34.30 E-value=34 Score=30.66 Aligned_cols=70 Identities=10% Similarity=0.186 Sum_probs=43.1
Q ss_pred HHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhcc
Q 005882 62 LETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGA 135 (672)
Q Consensus 62 LEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~WaeaF~~~~~~~p~~~~aY~~LkrkGi 135 (672)
|+.+.+|-|.........-.|-+.=+..++...+..+++++.++|..|.+.-+.. ..+..+++-|++-|.
T Consensus 27 l~~Ia~~lG~~Wk~LAR~LGlse~dId~I~~~~p~~l~eq~~qmL~~W~~r~G~~----AT~~~L~~AL~~~~l 96 (114)
T 2of5_A 27 INQLAQRLGPEWEPMVLSLGLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGKQ----ATFQSLHNGLRAVEV 96 (114)
T ss_dssp HHHHHHTCCSTHHHHHHTTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHGGG----CCHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCcC----cHHHHHHHHHHHcCC
Confidence 4445666676555433333344443333443334589999999999999987532 246677777777663
No 117
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=33.93 E-value=1.2e+02 Score=36.30 Aligned_cols=73 Identities=12% Similarity=0.210 Sum_probs=55.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCC-ChhHHHHHHHHHHHHHHHh
Q 005882 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKP-DTHVKEKILILIDTWQEAF 113 (672)
Q Consensus 39 AvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~-d~~VKeKILeLIq~WaeaF 113 (672)
.+..|.+.|++.+.++...++.+|..+++.|+..+...+ .+++..|.++++.+. ...|+..++..+..|.+.+
T Consensus 435 ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l--~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~ 508 (1230)
T 1u6g_C 435 IVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI--PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNH 508 (1230)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH--HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH--HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhC
Confidence 445566779999999999999999999999876554322 467777777777542 4689999999999987654
No 118
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=32.42 E-value=47 Score=30.07 Aligned_cols=69 Identities=12% Similarity=0.114 Sum_probs=39.3
Q ss_pred HHHHHHhccccchhhhhcchHHHHH-HHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhc
Q 005882 61 LLETIIKNCGDIVHMHVAEKNVLHE-MVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAG 134 (672)
Q Consensus 61 LLEtcVKNCG~~Fh~eVask~FLne-LvKLvk~k~d~~VKeKILeLIq~WaeaF~~~~~~~p~~~~aY~~LkrkG 134 (672)
.++.+.++-|..+......=.|-+. |..|-... +..+++++.+||..|...-+.. ..+..+++.|++-|
T Consensus 8 ~f~~Ia~~lG~~Wk~LAR~LGlse~dId~Ie~~~-p~dl~eq~~~mL~~W~~r~G~~----ATv~~L~~AL~~i~ 77 (122)
T 3ezq_B 8 AFNVICDNVGKDWRRLARQLKVSDTKIDSIEDRY-PRNLTERVRESLRIWKNTEKEN----ATVAHLVGALRSCQ 77 (122)
T ss_dssp HHHHHHTTCCTTHHHHHHHTTCCHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHCTTT----CCHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhhHHHHHHHhCCCHHHHHHHHHHC-CCCHHHHHHHHHHHHHHhhCCC----chHHHHHHHHHHCC
Confidence 3455556666544432222234333 33333332 2359999999999999986542 23556666666533
No 119
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=32.16 E-value=97 Score=35.94 Aligned_cols=86 Identities=10% Similarity=0.160 Sum_probs=57.7
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccC-CChhHHHHH
Q 005882 24 EICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKK-PDTHVKEKI 102 (672)
Q Consensus 24 eICD~In~~~~~aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k-~d~~VKeKI 102 (672)
.+|+.+...+..-..++..|-+.| + ++|+..|-..|..+.+.|+..+.-.+ ..+++.|.+++.+. .+..++..+
T Consensus 532 ~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~--~~ll~~l~~~l~~~~~~~~~~~~~ 606 (971)
T 2x1g_F 532 SYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYA--DPLLNACHASLNTGRMKNSDSVRL 606 (971)
T ss_dssp HTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHH--HHHHHHHHHHHHSTTSCHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHHHHHcCCCCChHHHHHH
Confidence 344444445556677788888888 3 67888899999999999987665433 35777777777653 566778777
Q ss_pred HHHHHHHHHHhC
Q 005882 103 LILIDTWQEAFG 114 (672)
Q Consensus 103 LeLIq~WaeaF~ 114 (672)
++-|-.-..++.
T Consensus 607 ~~ai~~i~~~~~ 618 (971)
T 2x1g_F 607 MFSIGKLMSLLR 618 (971)
T ss_dssp HHHHHHHHHTSC
T ss_pred HHHHHHHHHhCC
Confidence 777777666553
No 120
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=32.15 E-value=1.9e+02 Score=25.32 Aligned_cols=79 Identities=16% Similarity=0.140 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHhcC--CCChH--HHHH-HHHHHHHHHHHHHHHHhhcCCCHHHHHHHhhhhHHHHHHHHHHHhh
Q 005882 188 EIQNARGIMDVLAEMLNALD--PNNKE--EVIV-DLVDQCRTYKQRVVHLVNSTADESLLCQGLQLNDDLQRLLAKHESF 262 (672)
Q Consensus 188 ELe~ak~nvkLL~EML~~l~--P~~~e--Eli~-EL~~qCR~mr~RV~rLIq~t~DEElL~eLL~lNDeLn~VLekYE~l 262 (672)
-|+.+..++..|.-|+.-+- .+..+ +-|. +|.-.|..+..++-.|......|.++.++-.+=-+++++-..|.+.
T Consensus 11 li~t~s~niq~l~k~~~qlGTkrD~~~LR~~l~~~l~~~~~~L~k~~~~l~~l~qkeRL~~dF~~l~~~fQ~~qr~y~ek 90 (97)
T 1hs7_A 11 LIETFAEQSRVLEKECTKIGSKRDSKELRYKIETELIPNCTSVRDKIESNILIHQNGKLSADFKNLKTKYQSLQQSYNQR 90 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHTHHHHHHHHHHHHHHSTHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778888888887652 22333 6777 9999999999999966654357888888888888888888888776
Q ss_pred hcCC
Q 005882 263 ASGK 266 (672)
Q Consensus 263 ~~g~ 266 (672)
.+..
T Consensus 91 ~~e~ 94 (97)
T 1hs7_A 91 KSLF 94 (97)
T ss_dssp HHHS
T ss_pred Hhcc
Confidence 5543
No 121
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=31.32 E-value=1e+02 Score=36.05 Aligned_cols=95 Identities=20% Similarity=0.190 Sum_probs=59.9
Q ss_pred CcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCC---CHHHHHHHHH-----------------HHHHHHhccc--cch
Q 005882 16 GPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSR---NSKVQLLALT-----------------LLETIIKNCG--DIV 73 (672)
Q Consensus 16 ~pDW~~ileICD~In~~~~~aKEAvRaLrKRLksk---np~vqLlALt-----------------LLEtcVKNCG--~~F 73 (672)
..+|.++=.+|..+. .-+||++++++-|..+ ...+.|+-+- +|++|||-|- .||
T Consensus 613 ~lEWEiLGlla~RL~----h~~EA~~a~~~~l~~RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~~w~~Rw 688 (754)
T 4gns_B 613 GLEWELLGLIMLRTW----HWEDAVACLRTSIVARFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKISYDCRY 688 (754)
T ss_dssp HHHHHHHHHHHHHTT----CHHHHHHHHHHHHSSSCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC----CHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHHHhhhc
Confidence 468999888888884 3788888888888654 2344444332 4778888873 377
Q ss_pred hhhhcchHHHHHHHHHhccCCChhHHHHHH-------------HHHHHHHHHhCC
Q 005882 74 HMHVAEKNVLHEMVKIARKKPDTHVKEKIL-------------ILIDTWQEAFGG 115 (672)
Q Consensus 74 h~eVask~FLneLvKLvk~k~d~~VKeKIL-------------eLIq~WaeaF~~ 115 (672)
..++ +-..++-|.||+.+--...||.||+ +-+..|-+.|.+
T Consensus 689 Y~ef-s~~l~~~l~kLi~~~G~~kirs~I~~~~~~~~~i~~l~~~~l~~~~~~~~ 742 (754)
T 4gns_B 689 YNYC-QIFNLQLLEKLCNELGTHILRNKILLQPSIGDEIMVMIDAMLAWIADLDH 742 (754)
T ss_dssp TBCC-CHHHHHHHHHHHHHHCHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHTC
T ss_pred cccc-CHHHHHHHHHHHHHhChHHhhHHhhccccCCchHHHHHHHHHHHHHHhcC
Confidence 7776 3456666777665432334444442 445566666654
No 122
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=31.13 E-value=1.4e+02 Score=31.05 Aligned_cols=102 Identities=9% Similarity=0.097 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhCC------C---CHHHHHHHHHHHHHHH--hccccchhhh-----hcchHHH
Q 005882 20 AMNIEICDMLNHDPGQAKDVVKGIKKRIGS------R---NSKVQLLALTLLETII--KNCGDIVHMH-----VAEKNVL 83 (672)
Q Consensus 20 ~~ileICD~In~~~~~aKEAvRaLrKRLks------k---np~vqLlALtLLEtcV--KNCG~~Fh~e-----Vask~FL 83 (672)
....++|..+|-+.....+|.+..++ +++ . .....+.|= |-=+|. ++.+-.+-+. +.=.+|+
T Consensus 4 ~rF~~lC~~Lnld~~~~~~Aw~~~~~-~~~~~~~~~~~~~~~~~~w~ac-LY~a~~~~~~n~vsLt~LLr~~~lsi~~Ff 81 (304)
T 2qdj_A 4 PDFTALCQKLKIPDHVRERAWLTWEK-VSSVDGVLGGYIQKKKELWGIC-IFIAAVDLDEMSFTFTELQKNIEISVHKFF 81 (304)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH-HHC----------CHHHHHHHH-HHHHHHHHTCCCSCHHHHHHHHTCCHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHH-HhccccccCCCccchHHHHHHh-HHHHhhccCCCcCcHHHHHHHcCCCHHHHH
Confidence 45778999999998888999998877 322 1 233333333 333332 2222222221 2336788
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 005882 84 HEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQEL 130 (672)
Q Consensus 84 neLvKLvk~k~d~~VKeKILeLIq~WaeaF~~~~~~~p~~~~aY~~L 130 (672)
++|.+ +. .+.+++++|-+|-......+. -|.+|..+|+.|
T Consensus 82 ~k~~~-~d--~~~~~~~~i~~Le~~f~v~~~----l~kky~~if~~i 121 (304)
T 2qdj_A 82 NLLKE-ID--TSTKVDNAMSRLLKKYDVLFA----LFSKLERTCELI 121 (304)
T ss_dssp HHHTT-SC--CCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHH-cC--CCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 88888 33 678899998887777766653 356677777765
No 123
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=30.97 E-value=46 Score=38.42 Aligned_cols=70 Identities=11% Similarity=0.137 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhcc-CCChhHHHHHHHHHHHHH
Q 005882 37 KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARK-KPDTHVKEKILILIDTWQ 110 (672)
Q Consensus 37 KEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~-k~d~~VKeKILeLIq~Wa 110 (672)
+.++..|-+.|.+ +.|+..|...|..+++.|+..|.-.+ ..+++.|.+++.+ ..+.+++..+++.|..-.
T Consensus 528 ~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~ 598 (963)
T 2x19_B 528 NSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA--ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLL 598 (963)
T ss_dssp TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH--HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Confidence 3455556666654 78999999999999999987766433 4577777776654 234556655555554443
No 124
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=29.99 E-value=1.1e+02 Score=26.44 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHH--------HHHHHH----------h-hc--CCCHHHHHHH
Q 005882 189 IQNARGIMDVLAEMLNAL--DPNNKEEVIVDLVDQCRTYK--------QRVVHL----------V-NS--TADESLLCQG 245 (672)
Q Consensus 189 Le~ak~nvkLL~EML~~l--~P~~~eEli~EL~~qCR~mr--------~RV~rL----------I-q~--t~DEElL~eL 245 (672)
++++...+..|++.|..+ +|.+. +.+.+++....++| ..|.++ + .. ..+.+++..+
T Consensus 12 ~~Ea~e~l~~l~~~l~~le~~~~d~-~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l~~~r~~~~~~~~~l~~~l 90 (113)
T 2lch_A 12 TDELKELIQNVNDDIKEVEKNPEDM-EYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLVDKMLNSEIKITSDLIDKV 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSTTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 566777777777766654 34433 55555555555544 112221 1 11 2477788889
Q ss_pred hhhhHHHHHHHHHH
Q 005882 246 LQLNDDLQRLLAKH 259 (672)
Q Consensus 246 L~lNDeLn~VLekY 259 (672)
+..-|.|...++.+
T Consensus 91 ~~~~d~l~~~l~~~ 104 (113)
T 2lch_A 91 KKKLDMVTRELDKK 104 (113)
T ss_dssp HHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988888543
No 125
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=29.33 E-value=1e+02 Score=34.74 Aligned_cols=72 Identities=15% Similarity=0.128 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 005882 37 KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (672)
Q Consensus 37 KEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~Wa 110 (672)
..++..|.+.|.+.++.+|..|...|-.+.... ......|....-+..|+++++. .+..|++.+...|..++
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s-~~~~vq~~Aa~AL~nLa 118 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDH-PKKEVHLGACGALKNIS 118 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGC-SSHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCC-CCHHHHHHHHHHHHHHH
Confidence 457888889999999999999988876666543 3456677777888889999876 56788888888877765
No 126
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=29.26 E-value=1.5e+02 Score=30.78 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCCh-hHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 005882 54 VQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDT-HVKEKILILIDTWQEAFGGPRARYPQYYAAYQEL 130 (672)
Q Consensus 54 vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~-~VKeKILeLIq~WaeaF~~~~~~~p~~~~aY~~L 130 (672)
..=+|+.++|.+.++- ..+ +.+.+++|++|++.-++. .-|.+.+.-...|...+.+.....|.+..+.-..
T Consensus 72 a~DLa~llvev~~~~~-~~~-----~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~ 143 (312)
T 2wpv_A 72 GTDLIFYLLEVYDLAE-VKV-----DDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSK 143 (312)
T ss_dssp HHHHHHHHHHHHHHTT-CCC-----SHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-CCC-----CHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Confidence 3447778888888863 222 467888999988763222 3478999999999999976433456665555443
No 127
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=28.51 E-value=2e+02 Score=32.59 Aligned_cols=89 Identities=16% Similarity=0.195 Sum_probs=65.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccc-cchhhhhcc----hHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q 005882 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCG-DIVHMHVAE----KNVLHEMVKIARKKPDTHVKEKILILIDTWQEA 112 (672)
Q Consensus 38 EAvRaLrKRLksknp~vqLlALtLLEtcVKNCG-~~Fh~eVas----k~FLneLvKLvk~k~d~~VKeKILeLIq~Waea 112 (672)
+.+..|..=|++....++..+|.||+.++++-. ..++....+ ..|...|++++.-.+...+|++.+.+++.-=..
T Consensus 317 ~~l~~l~~lL~~~~~~~~~kGL~Ll~~ll~~l~~~sl~~~~ld~~~~~~~~q~L~~v~~~~P~~~lR~~a~~vl~~~I~~ 396 (596)
T 4f52_E 317 FNMGHIEVFLQRTEESVISKGLELLENSLLRIEDNSLLYQYLEIKSFLTVPQGLVKVMTLCPIETLRKKSLAMLQLYINK 396 (596)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSSCTTCBCGGGGGSHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHhHHHHHHHHHHhccCccCChhhhchhhHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHh
Confidence 446677777888999999999999999988754 234444433 456666777776678889999999999998888
Q ss_pred hCCCCCChhHHHHHH
Q 005882 113 FGGPRARYPQYYAAY 127 (672)
Q Consensus 113 F~~~~~~~p~~~~aY 127 (672)
|... +||.-+..+.
T Consensus 397 ~~~e-~R~~iL~~LL 410 (596)
T 4f52_E 397 LDSQ-GKYTLFRCLL 410 (596)
T ss_dssp BCHH-HHHHHHHHHH
T ss_pred CChH-HHHHHHHHHH
Confidence 8743 5665555444
No 128
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=26.99 E-value=1.6e+02 Score=26.30 Aligned_cols=69 Identities=4% Similarity=0.060 Sum_probs=43.8
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhc
Q 005882 22 NIEICDMLNHDPGQAKDVVKGIKKRIGS----RNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIAR 91 (672)
Q Consensus 22 ileICD~In~~~~~aKEAvRaLrKRLks----knp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk 91 (672)
+-++..+|....+.-++|++.++++|.+ ....-.-.|+.+|.++=+-|-. +..--.=-+||..|++.+.
T Consensus 6 v~DFk~ll~~~~~~~~~A~~qm~~vI~~Ll~~s~~~~y~ka~ecl~~~R~~~i~-~~ep~~yN~Fl~~Lk~~~~ 78 (120)
T 1q2z_A 6 AENFRVLVKQKKASFEEASNQLINHIEQFLDTNETPYFMKSIDCIRAFREEAIK-FSEEQRFNNFLKALQEKVE 78 (120)
T ss_dssp HHHHHHHTSSSCCTTTHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchhHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHh-ccChHHHHHHHHHHHHHHH
Confidence 5677788877655677788777777642 3445566888888888888842 2111112357777776444
No 129
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=26.50 E-value=1.4e+02 Score=29.11 Aligned_cols=67 Identities=13% Similarity=0.075 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChH---HHHHHHHHHHHHHHHHHHHHhhcC----CCHHHHHHHhhhhHHHHHH
Q 005882 189 IQNARGIMDVLAEMLNALDPNNKE---EVIVDLVDQCRTYKQRVVHLVNST----ADESLLCQGLQLNDDLQRL 255 (672)
Q Consensus 189 Le~ak~nvkLL~EML~~l~P~~~e---Eli~EL~~qCR~mr~RV~rLIq~t----~DEElL~eLL~lNDeLn~V 255 (672)
.+.+...+.+|.++|.+++..+.+ +.|.++=.+|..+++.|..-+..+ -|-+-+-.|+..=|++...
T Consensus 36 a~~v~~~a~~L~~~l~~~~~~~~~~~~~~I~~lE~~aD~i~~~i~~~L~~~fitP~dReDI~~L~~~lDdI~D~ 109 (227)
T 3l39_A 36 SDVLSASSVLLVESMEHDLPTERADYYKQIKDMEREGDRLTHLIFDELSTTFITPFDREDIHDLASCMDDVIDG 109 (227)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHH
Confidence 356777888888888754332222 677777788888898888877764 2333333444444444333
No 130
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=25.83 E-value=2.3e+02 Score=23.86 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=19.5
Q ss_pred CCHHHHHHHhhhhHHHHHHHHHH
Q 005882 237 ADESLLCQGLQLNDDLQRLLAKH 259 (672)
Q Consensus 237 ~DEElL~eLL~lNDeLn~VLekY 259 (672)
.+++++..++...|.|...++.+
T Consensus 81 ~~~~~~~~l~~~~d~l~~~l~~~ 103 (105)
T 1tqg_A 81 ITSDLLDKIFAGVDMITRMVDKI 103 (105)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHh
Confidence 57788999999999999988765
No 131
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=25.43 E-value=1.1e+02 Score=31.98 Aligned_cols=71 Identities=6% Similarity=-0.007 Sum_probs=56.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 005882 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (672)
Q Consensus 39 AvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~Wae 111 (672)
++..|.+.|++++..++..|...|-.|...+ ......|.+...+.-|++|+..+ +..||+.++..|.....
T Consensus 264 ~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 264 CLQTLLQHLKSHSLTIVSNACGTLWNLSARN-PKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMA 334 (354)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC-HHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHcCCChHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHc
Confidence 5677888899999999999999888887543 34566777788899999998764 67889988888877665
No 132
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=25.32 E-value=73 Score=28.89 Aligned_cols=33 Identities=15% Similarity=0.300 Sum_probs=26.3
Q ss_pred hHHHHHHHHHhcc-CCChhHHHHHHHHHHHHHHH
Q 005882 80 KNVLHEMVKIARK-KPDTHVKEKILILIDTWQEA 112 (672)
Q Consensus 80 k~FLneLvKLvk~-k~d~~VKeKILeLIq~Waea 112 (672)
++||..|+++.++ +..++|-++|.+||+..-++
T Consensus 23 k~FL~tLi~las~~~~spev~~~Vr~LVq~Ll~~ 56 (114)
T 2p6v_A 23 XNFLSTLIXLASSGXQSTETAANVXELVQNLLDG 56 (114)
T ss_dssp HHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccccChHHHHHHHHHHHHHHHc
Confidence 6899999999986 46678888888888777654
No 133
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.30 E-value=2.6e+02 Score=25.19 Aligned_cols=79 Identities=14% Similarity=0.193 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcC-CCC-hH--HHHHHHHHHHHHHHHHHHHHhhcC---C-----CHH--HHHHHhhhhHHH
Q 005882 187 TEIQNARGIMDVLAEMLNALD-PNN-KE--EVIVDLVDQCRTYKQRVVHLVNST---A-----DES--LLCQGLQLNDDL 252 (672)
Q Consensus 187 sELe~ak~nvkLL~EML~~l~-P~~-~e--Eli~EL~~qCR~mr~RV~rLIq~t---~-----DEE--lL~eLL~lNDeL 252 (672)
.-|..+.+++.-|.-+|..+- +.+ .+ |.|.++.+.|..+=+.+-..|..+ . +++ ---..-.|-.|+
T Consensus 21 ~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~~~~r~~k~q~~KL~~dF 100 (130)
T 2dnx_A 21 GNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQRLQKERLMNDF 100 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHH
Confidence 347788888999999988763 222 23 666666666655555554444321 1 121 222355667888
Q ss_pred HHHHHHHHhhhcC
Q 005882 253 QRLLAKHESFASG 265 (672)
Q Consensus 253 n~VLekYE~l~~g 265 (672)
..+|..|.++-+.
T Consensus 101 ~~~L~~FQ~~Qr~ 113 (130)
T 2dnx_A 101 SAALNNFQAVQRR 113 (130)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8899999887543
No 134
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=24.88 E-value=70 Score=28.02 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=26.7
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhc
Q 005882 94 PDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAG 134 (672)
Q Consensus 94 ~d~~VKeKILeLIq~WaeaF~~~~~~~p~~~~aY~~LkrkG 134 (672)
.+..+++++.+||..|...-+.. ..+..+++.|++-|
T Consensus 52 ~~~~~~eq~~~mL~~W~~r~G~~----AT~~~L~~AL~~~~ 88 (110)
T 1wxp_A 52 DSEDMKMRAKQLLVAWQDQEGVH----ATPENLINALNKSG 88 (110)
T ss_dssp HCSSHHHHHHHHHHHHHHHHGGG----CCHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHHhhCcC----cHHHHHHHHHHHcC
Confidence 34588999999999999886432 23566677776654
No 135
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=23.07 E-value=2.3e+02 Score=26.64 Aligned_cols=69 Identities=4% Similarity=0.067 Sum_probs=43.2
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhc
Q 005882 22 NIEICDMLNHDPGQAKDVVKGIKKRIG----SRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIAR 91 (672)
Q Consensus 22 ileICD~In~~~~~aKEAvRaLrKRLk----sknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk 91 (672)
+-++..+|....+.-++|++.++++|. +....-.-.|+.+|.++=+-|-. +-.--.=-+||.+|++.+.
T Consensus 37 v~DFk~lL~~~~~~~~~A~~qM~~vI~~Ll~~s~~~~y~KA~ecL~~lR~~~i~-~~ep~~yN~Fl~~LK~~l~ 109 (152)
T 1rw2_A 37 AENFRVLVKQKKASFEEASNQLINHIEQFLDTNETPYFMKSIDCIRAFREEAIK-FSEEQRFNNFLKALQEKVE 109 (152)
T ss_dssp THHHHHHHHSSSSCHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH-HTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchhHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-ccChHHHHHHHHHHHHHHH
Confidence 566777777665667888888888774 22334555788888888877742 2111112357777766543
No 136
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=22.80 E-value=1.1e+02 Score=26.68 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=27.4
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhc
Q 005882 95 DTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAG 134 (672)
Q Consensus 95 d~~VKeKILeLIq~WaeaF~~~~~~~p~~~~aY~~LkrkG 134 (672)
+..+++++.++|..|...-+.. ..+..+++.|++-|
T Consensus 54 p~~~~eq~~~mL~~W~~~~g~~----AT~~~L~~aL~~i~ 89 (111)
T 2yqf_A 54 PNSLLEQSVALLNLWVIREGQN----ANMENLYTALQSID 89 (111)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTS----CCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHhhCCC----chHHHHHHHHHHcC
Confidence 4589999999999999986543 24667777777655
No 137
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=21.51 E-value=1.1e+02 Score=27.06 Aligned_cols=72 Identities=17% Similarity=0.082 Sum_probs=43.2
Q ss_pred HHHHHHHhccccchhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhc
Q 005882 60 TLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAG 134 (672)
Q Consensus 60 tLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VKeKILeLIq~WaeaF~~~~~~~p~~~~aY~~LkrkG 134 (672)
..|..+.++-|..+......-.|-+.=+..++......+++++.++|..|...-++. -..+..+++.|++-|
T Consensus 14 ~~l~~ia~~lg~dWk~LAr~Lg~s~~~I~~I~~~~~~~l~eq~~~mL~~W~~~~g~~---~Atv~~L~~aL~~~~ 85 (118)
T 2of5_H 14 SNLLSVAGRLGLDWPAVALHLGVSYREVQRIRHEFRDDLDEQIRHMLFSWAERQAGQ---PGAVGLLVQALEQSD 85 (118)
T ss_dssp HHHHHHHHTCCTTHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHTTSSC---SSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhccCCC---CcHHHHHHHHHHHcC
Confidence 345566677776554332223344433333443334578999999999999986432 235667777777654
No 138
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=21.48 E-value=2e+02 Score=23.39 Aligned_cols=48 Identities=21% Similarity=0.366 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC--CCHHHHHHHhhhhHHHHHHHHHHHhhhcCC
Q 005882 215 IVDLVDQCRTYKQRVVHLVNST--ADESLLCQGLQLNDDLQRLLAKHESFASGK 266 (672)
Q Consensus 215 i~EL~~qCR~mr~RV~rLIq~t--~DEElL~eLL~lNDeLn~VLekYE~l~~g~ 266 (672)
+.+|.......|+.+.+++..- ++++. |.+.-+|.+.|..|.++....
T Consensus 3 ~~~L~~~IE~kR~eL~~l~~k~Gl~~~~v----I~~SQeLD~LIn~Y~k~~~~~ 52 (64)
T 2c0s_A 3 VTKLNDRIEAKKKELIYLVEKYGFTHHKV----ISFSQELDRLLNLLIELKTKK 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTSHHH----HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHH----HHHHHHHHHHHHHHHHHHHhh
Confidence 3567777888889999998754 67654 789999999999999876543
No 139
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=21.42 E-value=3.7e+02 Score=31.98 Aligned_cols=105 Identities=8% Similarity=0.022 Sum_probs=64.2
Q ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccc--hhhhhcchH
Q 005882 4 SMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDI--VHMHVAEKN 81 (672)
Q Consensus 4 ~lIekATse~l~~pDW~~ileICD~In~~~~~aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~--Fh~eVask~ 81 (672)
..|+-+-++.-....-....++++.+++++++..-|...|.+.- ..++.+...|+.+|+..|+.-... |+ ....
T Consensus 10 ~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~-~~~~~vr~fa~~~L~~~I~~l~~e~~~~---~~~~ 85 (980)
T 3ibv_A 10 NAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKT-KYKPSTRLICLQTLSEKVREWNNESNLL---ELQM 85 (980)
T ss_dssp HHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTT-TSCHHHHHHHHHHHHHHHHHCCTTTSHH---HHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHhCChhhhHH---HHHH
Confidence 44555555543344556788899999998876666666553210 017999999999999999922111 00 1122
Q ss_pred HHHHHHHHhcc----CCChhHHHHHHHHHHHHHHH
Q 005882 82 VLHEMVKIARK----KPDTHVKEKILILIDTWQEA 112 (672)
Q Consensus 82 FLneLvKLvk~----k~d~~VKeKILeLIq~Waea 112 (672)
+-+.|..++.. ..+..||.|+..+|-.-...
T Consensus 86 lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~ 120 (980)
T 3ibv_A 86 IRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQ 120 (980)
T ss_dssp HHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Confidence 23334444432 34568999988887666555
No 140
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=21.34 E-value=1.4e+02 Score=35.34 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccch
Q 005882 31 HDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIV 73 (672)
Q Consensus 31 ~~~~~aKEAvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~F 73 (672)
..+..-+.++..|-+.|.+.++.|+..|-..|..+++.|+..|
T Consensus 533 ~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l 575 (1049)
T 3m1i_C 533 AHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHF 575 (1049)
T ss_dssp HCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444456778888888999999999999999999999998765
No 141
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=21.11 E-value=1.3e+02 Score=35.36 Aligned_cols=67 Identities=10% Similarity=0.202 Sum_probs=50.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHHhccC--CChhHHHHHHHHH
Q 005882 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKK--PDTHVKEKILILI 106 (672)
Q Consensus 39 AvRaLrKRLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvKLvk~k--~d~~VKeKILeLI 106 (672)
++..|..=|.+.+.+++..|+..|.-++.. +......|.+...+.-|.+|++.. .+.+|.+.+++.|
T Consensus 709 ~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL 777 (810)
T 3now_A 709 WLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCL 777 (810)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHH
Confidence 344666667899999999999999999884 455667788889999999998754 3556666544443
No 142
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=21.07 E-value=1.1e+02 Score=26.74 Aligned_cols=15 Identities=33% Similarity=0.572 Sum_probs=12.4
Q ss_pred HHhhhhHHHHHHHHH
Q 005882 244 QGLQLNDDLQRLLAK 258 (672)
Q Consensus 244 eLL~lNDeLn~VLek 258 (672)
++=.|||+||+.|..
T Consensus 53 ~IRdLNDEINkL~rE 67 (92)
T 1x4t_A 53 RIRDLNDEINKLLRE 67 (92)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 567889999999864
No 143
>2hfi_A Hypothetical protein YPPE; YPPE_bacsu, GFT structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Bacillus subtilis} SCOP: a.24.26.1 PDB: 2im8_A
Probab=20.33 E-value=1.7e+02 Score=27.02 Aligned_cols=75 Identities=7% Similarity=-0.062 Sum_probs=58.3
Q ss_pred CCCCCcC-HHHHHHHHHHHhCCCCCHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHH
Q 005882 12 DMLIGPD-WAMNIEICDMLNHDPGQAKDVVKGIKK--RIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVK 88 (672)
Q Consensus 12 e~l~~pD-W~~ileICD~In~~~~~aKEAvRaLrK--RLksknp~vqLlALtLLEtcVKNCG~~Fh~eVask~FLneLvK 88 (672)
+...+.| ..-+--++|.|..--+.-++.+..+.+ |.++=++...-.+..-++.++-.| |......|+|++.+..
T Consensus 29 e~~~e~DF~~eVKPf~d~vd~~l~~w~~~a~~~I~~~rpkY~~~~Qie~~~eNie~lsVq~---f~~~TskKrF~e~~kS 105 (131)
T 2hfi_A 29 NSNHSYDFFETIKPAVEENDELAARWAEGALELIKVRRPKYVHKEQIEAVKDNFLELVLQS---YVHHIHKKRFKDITES 105 (131)
T ss_dssp SSCCCCCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSCHHHHHHHHHHHHHHHHHH---HHCCCCSHHHHHHHHH
T ss_pred HcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH---hCCCcchhHHHHHHHH
Confidence 4445555 456777999998877777765555554 688889999999999999999999 7778899999998875
Q ss_pred H
Q 005882 89 I 89 (672)
Q Consensus 89 L 89 (672)
+
T Consensus 106 V 106 (131)
T 2hfi_A 106 V 106 (131)
T ss_dssp H
T ss_pred H
Confidence 3
No 144
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=20.27 E-value=1.7e+02 Score=23.58 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC--CCHHHHHHHhhhhHHHHHHHHHHHhhhcCCc
Q 005882 215 IVDLVDQCRTYKQRVVHLVNST--ADESLLCQGLQLNDDLQRLLAKHESFASGKS 267 (672)
Q Consensus 215 i~EL~~qCR~mr~RV~rLIq~t--~DEElL~eLL~lNDeLn~VLekYE~l~~g~~ 267 (672)
+.+|.......|+.+.+++..- ++++ .|.+.-+|.+.|..|.++.....
T Consensus 3 ~~~L~~~IE~kR~eL~~l~~k~Gl~~~~----vI~~SQeLD~LIn~Y~k~~~~~~ 53 (62)
T 2bzb_A 3 MGQLKNKIENKKKELIQLVARHGLDHDK----VLLFSRDLDKLINKFMNVKDKVH 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHHHHHTCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHHHHHHHHhcccc
Confidence 3567777788888999888743 5554 57899999999999998875543
Done!