Query 005883
Match_columns 672
No_of_seqs 408 out of 2310
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 15:09:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005883.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005883hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0236 Sulfate/bicarbonate/ox 100.0 9E-112 2E-116 966.8 45.3 619 46-669 13-648 (665)
2 TIGR00815 sulP high affinity s 100.0 4E-101 9E-106 875.5 59.0 560 97-660 1-563 (563)
3 COG0659 SUL1 Sulfate permease 100.0 6.1E-92 1.3E-96 787.5 54.8 547 92-669 3-552 (554)
4 PRK11660 putative transporter; 100.0 1.5E-91 3.3E-96 797.0 57.4 524 100-667 19-566 (568)
5 PF00916 Sulfate_transp: Sulfa 100.0 4.1E-48 9E-53 405.0 16.6 279 209-487 1-280 (280)
6 COG2252 Xanthine/uracil/vitami 100.0 2.2E-26 4.8E-31 245.7 31.6 383 90-517 4-406 (436)
7 TIGR03173 pbuX xanthine permea 100.0 3E-26 6.5E-31 251.8 33.2 321 121-484 11-352 (406)
8 PRK10720 uracil transporter; P 99.9 7E-25 1.5E-29 241.2 32.9 355 121-523 30-414 (428)
9 TIGR00801 ncs2 uracil-xanthine 99.9 4.6E-25 1E-29 242.4 30.2 326 120-483 20-367 (415)
10 PF13792 Sulfate_tra_GLY: Sulf 99.9 1.8E-25 3.9E-30 187.9 7.5 83 96-178 1-84 (84)
11 TIGR03616 RutG pyrimidine util 99.9 3.4E-21 7.3E-26 212.0 32.7 329 110-477 29-372 (429)
12 PRK11412 putative uracil/xanth 99.9 8.2E-19 1.8E-23 192.0 32.4 338 120-483 23-373 (433)
13 COG2233 UraA Xanthine/uracil p 99.9 5.8E-20 1.3E-24 198.1 22.5 311 141-481 57-376 (451)
14 PF00860 Xan_ur_permease: Perm 99.8 1.6E-18 3.6E-23 189.5 29.9 343 111-483 1-365 (389)
15 PF01740 STAS: STAS domain; I 99.8 5.9E-19 1.3E-23 160.0 7.8 117 542-660 1-117 (117)
16 TIGR02886 spore_II_AA anti-sig 99.7 1.9E-16 4.1E-21 141.0 10.4 102 547-661 5-106 (106)
17 cd07041 STAS_RsbR_RsbS_like Su 99.7 5.3E-16 1.1E-20 138.9 10.4 103 547-661 7-109 (109)
18 cd06844 STAS Sulphate Transpor 99.6 5.3E-15 1.1E-19 130.3 9.9 92 547-648 5-96 (100)
19 TIGR00843 benE benzoate transp 99.6 8.3E-13 1.8E-17 141.7 27.9 341 112-511 22-392 (395)
20 TIGR00834 ae anion exchange pr 99.6 3.3E-12 7.1E-17 148.6 32.0 349 112-469 370-790 (900)
21 KOG1172 Na+-independent Cl/HCO 99.5 3.3E-11 7.1E-16 136.8 29.9 321 140-469 395-766 (876)
22 TIGR00377 ant_ant_sig anti-ant 99.4 4.8E-13 1E-17 119.3 9.2 100 547-659 9-108 (108)
23 cd07042 STAS_SulP_like_sulfate 99.4 1.8E-12 4E-17 114.8 12.1 101 546-655 5-105 (107)
24 PF03594 BenE: Benzoate membra 99.4 5E-10 1.1E-14 118.3 29.2 274 192-512 87-377 (378)
25 cd07043 STAS_anti-anti-sigma_f 99.3 3E-11 6.5E-16 105.4 10.6 90 548-648 6-95 (99)
26 COG1366 SpoIIAA Anti-anti-sigm 99.2 9.6E-11 2.1E-15 106.3 11.0 99 551-662 14-112 (117)
27 PF00955 HCO3_cotransp: HCO3- 99.0 4.8E-11 1E-15 132.3 1.4 348 116-471 38-473 (510)
28 PF13466 STAS_2: STAS domain 99.0 1.4E-09 3.1E-14 91.5 8.5 80 554-645 1-80 (80)
29 KOG1292 Xanthine/uracil transp 99.0 2.4E-08 5.3E-13 107.3 19.3 306 141-476 54-397 (510)
30 COG3135 BenE Uncharacterized p 98.8 1E-06 2.2E-11 91.4 23.2 273 192-511 102-391 (402)
31 PF11840 DUF3360: Protein of u 97.8 0.012 2.7E-07 61.9 24.7 253 196-483 145-418 (492)
32 COG3113 Predicted NTP binding 97.5 0.00051 1.1E-08 58.8 7.7 84 553-648 13-96 (99)
33 PF11964 SpoIIAA-like: SpoIIAA 91.5 0.12 2.6E-06 45.5 2.3 106 550-666 1-109 (109)
34 TIGR00815 sulP high affinity s 90.6 8.9 0.00019 44.4 17.0 110 353-468 14-141 (563)
35 PF13344 Hydrolase_6: Haloacid 90.4 0.56 1.2E-05 41.1 5.4 72 594-667 1-77 (101)
36 PRK10720 uracil transporter; P 90.3 1.4 3E-05 49.2 9.7 61 391-455 261-321 (428)
37 PF14213 DUF4325: Domain of un 88.7 2.9 6.2E-05 34.4 8.1 66 564-641 2-70 (74)
38 KOG3040 Predicted sugar phosph 86.9 1 2.3E-05 44.3 4.9 76 589-666 5-85 (262)
39 COG0659 SUL1 Sulfate permease 86.0 10 0.00022 43.8 13.3 106 356-467 24-141 (554)
40 TIGR03173 pbuX xanthine permea 85.8 29 0.00064 38.3 16.5 111 118-245 225-345 (406)
41 PRK11660 putative transporter; 81.5 30 0.00065 40.1 14.9 170 344-515 273-445 (568)
42 PRK09928 choline transport pro 79.3 1.4E+02 0.0031 35.3 22.4 48 567-630 528-575 (679)
43 TIGR00801 ncs2 uracil-xanthine 77.8 14 0.0003 41.1 10.2 116 114-246 236-362 (415)
44 COG2233 UraA Xanthine/uracil p 77.8 9.4 0.0002 42.5 8.6 159 281-455 178-341 (451)
45 PF00860 Xan_ur_permease: Perm 75.1 4.8 0.0001 44.3 5.6 71 373-443 244-320 (389)
46 PF09345 DUF1987: Domain of un 73.6 12 0.00025 32.9 6.4 70 551-628 9-81 (99)
47 PRK11412 putative uracil/xanth 69.1 29 0.00062 38.8 9.9 140 307-455 195-336 (433)
48 PRK10444 UMP phosphatase; Prov 65.8 14 0.0003 38.0 6.2 74 591-666 1-79 (248)
49 TIGR01452 PGP_euk phosphoglyco 65.4 13 0.00028 38.7 6.1 74 591-666 2-80 (279)
50 KOG2882 p-Nitrophenyl phosphat 65.1 21 0.00046 37.4 7.2 77 591-668 22-103 (306)
51 PLN02645 phosphoglycolate phos 63.8 26 0.00055 37.3 8.0 73 591-665 28-105 (311)
52 TIGR01458 HAD-SF-IIA-hyp3 HAD- 63.3 12 0.00027 38.5 5.3 74 591-666 1-83 (257)
53 PF13788 DUF4180: Domain of un 61.1 1.1E+02 0.0023 27.6 10.0 100 549-663 4-112 (113)
54 TIGR03616 RutG pyrimidine util 60.7 45 0.00097 37.3 9.5 109 118-244 253-371 (429)
55 COG0573 PstC ABC-type phosphat 57.5 2.4E+02 0.0053 30.0 13.6 42 98-139 63-112 (310)
56 TIGR01684 viral_ppase viral ph 57.1 31 0.00066 36.4 6.8 60 589-648 124-189 (301)
57 PRK02261 methylaspartate mutas 56.2 35 0.00076 31.7 6.5 73 590-670 54-136 (137)
58 TIGR01457 HAD-SF-IIA-hyp2 HAD- 55.7 25 0.00053 36.1 6.0 73 592-666 2-79 (249)
59 COG5439 Uncharacterized conser 54.8 12 0.00026 32.0 2.8 41 591-631 46-87 (112)
60 PF00916 Sulfate_transp: Sulfa 52.9 1.1E+02 0.0024 31.6 10.5 187 291-480 88-276 (280)
61 PRK11778 putative inner membra 52.2 1.2E+02 0.0027 32.5 10.6 70 548-628 89-159 (330)
62 TIGR01459 HAD-SF-IIA-hyp4 HAD- 47.3 49 0.0011 33.5 6.6 73 590-664 7-84 (242)
63 cd07019 S49_SppA_1 Signal pept 46.8 80 0.0017 31.4 7.9 67 550-627 1-74 (211)
64 COG1137 YhbG ABC-type (unclass 46.0 81 0.0018 31.5 7.3 57 589-648 156-212 (243)
65 cd02071 MM_CoA_mut_B12_BD meth 44.0 81 0.0018 28.4 6.8 68 590-665 50-121 (122)
66 TIGR01501 MthylAspMutase methy 43.2 55 0.0012 30.3 5.6 61 606-669 63-133 (134)
67 TIGR00843 benE benzoate transp 43.1 3.2E+02 0.007 30.2 12.3 104 355-461 22-142 (395)
68 COG0647 NagD Predicted sugar p 43.1 55 0.0012 34.1 6.2 78 590-668 7-89 (269)
69 cd07023 S49_Sppa_N_C Signal pe 43.1 1.2E+02 0.0026 30.0 8.5 65 551-626 2-69 (208)
70 PRK11475 DNA-binding transcrip 42.8 90 0.0019 31.1 7.5 87 561-663 22-111 (207)
71 TIGR00640 acid_CoA_mut_C methy 41.6 80 0.0017 29.1 6.4 69 591-667 54-126 (132)
72 PRK10669 putative cation:proto 40.8 6.2E+02 0.013 29.2 15.6 40 591-645 441-480 (558)
73 cd07022 S49_Sppa_36K_type Sign 40.6 1.2E+02 0.0025 30.3 8.0 32 589-621 41-72 (214)
74 PHA03398 viral phosphatase sup 39.9 76 0.0016 33.5 6.5 60 589-648 126-191 (303)
75 TIGR00706 SppA_dom signal pept 39.6 1.3E+02 0.0027 29.9 8.0 58 551-620 2-59 (207)
76 cd00394 Clp_protease_like Case 39.2 69 0.0015 30.1 5.8 57 553-620 1-57 (161)
77 PRK03659 glutathione-regulated 39.2 4.5E+02 0.0098 30.7 13.7 42 590-646 423-464 (601)
78 COG0786 GltS Na+/glutamate sym 38.8 2.2E+02 0.0047 31.3 9.9 173 190-391 1-196 (404)
79 COG1433 Uncharacterized conser 37.8 90 0.002 28.4 5.9 49 615-666 57-106 (121)
80 COG1121 ZnuC ABC-type Mn/Zn tr 36.8 1.1E+02 0.0024 31.6 7.1 43 589-632 156-198 (254)
81 PHA00736 hypothetical protein 36.1 1.6E+02 0.0035 23.5 6.1 68 128-205 4-72 (79)
82 TIGR00822 EII-Sor PTS system, 35.0 3.3E+02 0.0071 28.4 10.3 29 210-238 162-190 (265)
83 COG2271 UhpC Sugar phosphate p 34.6 5.7E+02 0.012 28.6 12.4 35 371-405 76-114 (448)
84 TIGR01686 FkbH FkbH-like domai 34.6 70 0.0015 34.0 5.6 59 590-648 2-78 (320)
85 COG4618 ArpD ABC-type protease 33.7 1.1E+02 0.0025 34.6 7.0 76 589-666 489-564 (580)
86 PF00308 Bac_DnaA: Bacterial d 33.0 1.9E+02 0.0041 29.0 8.1 68 561-630 68-137 (219)
87 PF00072 Response_reg: Respons 32.1 1.7E+02 0.0037 24.7 6.8 70 561-649 28-99 (112)
88 TIGR01672 AphA HAD superfamily 31.0 2.2E+02 0.0047 29.1 8.2 77 556-647 42-160 (237)
89 cd03412 CbiK_N Anaerobic cobal 30.1 1.9E+02 0.0042 26.2 7.0 54 605-666 12-67 (127)
90 COG0244 RplJ Ribosomal protein 29.3 2.1E+02 0.0046 27.7 7.4 66 591-663 23-92 (175)
91 TIGR02717 AcCoA-syn-alpha acet 28.8 5E+02 0.011 29.1 11.4 94 556-668 343-444 (447)
92 COG3715 ManY Phosphotransferas 28.6 3.4E+02 0.0074 28.2 9.0 64 386-450 51-114 (265)
93 COG2450 Uncharacterized conser 28.5 1.6E+02 0.0035 26.8 5.8 37 592-628 65-101 (124)
94 cd07021 Clp_protease_NfeD_like 28.1 1.1E+02 0.0025 29.6 5.3 47 551-608 1-47 (178)
95 PF08496 Peptidase_S49_N: Pept 27.8 2.3E+02 0.0049 27.0 7.1 33 547-579 96-128 (155)
96 TIGR01662 HAD-SF-IIIA HAD-supe 26.6 1.3E+02 0.0027 27.0 5.2 54 592-645 1-73 (132)
97 cd02072 Glm_B12_BD B12 binding 26.3 1.4E+02 0.0031 27.4 5.3 60 602-664 57-126 (128)
98 COG0565 LasT rRNA methylase [T 26.0 1.1E+02 0.0024 31.2 4.9 68 591-666 5-75 (242)
99 TIGR02230 ATPase_gene1 F0F1-AT 25.9 1.4E+02 0.0031 26.1 5.0 42 278-319 52-93 (100)
100 COG4129 Predicted membrane pro 25.5 2.1E+02 0.0045 30.9 7.2 51 422-478 8-58 (332)
101 KOG1292 Xanthine/uracil transp 25.3 2.9E+02 0.0062 31.2 8.2 75 141-231 309-384 (510)
102 PRK04596 minC septum formation 25.1 3.1E+02 0.0068 28.2 8.0 75 563-645 28-103 (248)
103 TIGR01460 HAD-SF-IIA Haloacid 25.0 1.2E+02 0.0026 30.6 5.2 71 594-666 1-77 (236)
104 COG1296 AzlC Predicted branche 25.0 1E+02 0.0023 31.4 4.6 51 107-162 9-62 (238)
105 COG0053 MMT1 Predicted Co/Zn/C 24.9 8.4E+02 0.018 25.8 11.8 27 553-579 250-276 (304)
106 TIGR00210 gltS sodium--glutama 24.5 1.4E+02 0.003 33.1 5.8 39 200-238 9-51 (398)
107 PF13401 AAA_22: AAA domain; P 23.4 84 0.0018 27.9 3.3 41 592-637 89-129 (131)
108 PF03641 Lysine_decarbox: Poss 23.2 1.6E+02 0.0034 27.1 5.0 58 607-664 62-133 (133)
109 PF02579 Nitro_FeMo-Co: Dinitr 23.1 1.9E+02 0.0042 24.0 5.4 48 615-665 45-93 (94)
110 PF10337 DUF2422: Protein of u 23.1 9.1E+02 0.02 27.0 12.2 78 430-515 136-213 (459)
111 KOG0236 Sulfate/bicarbonate/ox 23.1 1.2E+03 0.027 27.6 13.6 121 98-236 311-440 (665)
112 PF03956 DUF340: Membrane prot 22.9 1.5E+02 0.0032 29.3 5.1 57 450-506 23-80 (191)
113 PF09930 DUF2162: Predicted tr 22.7 5.1E+02 0.011 26.2 8.9 16 499-514 130-145 (224)
114 TIGR02663 nifX nitrogen fixati 22.6 2.3E+02 0.0051 25.3 6.0 48 622-671 62-110 (119)
115 PF03818 MadM: Malonate/sodium 22.4 2.7E+02 0.0058 22.0 5.2 17 306-322 41-57 (60)
116 PRK04125 murein hydrolase regu 22.3 71 0.0015 29.9 2.5 17 299-315 29-45 (141)
117 PF04206 MtrE: Tetrahydrometha 22.3 5.7E+02 0.012 26.0 8.9 43 134-181 51-93 (269)
118 cd02067 B12-binding B12 bindin 22.3 5.4E+02 0.012 22.6 8.5 65 590-665 50-118 (119)
119 TIGR01664 DNA-3'-Pase DNA 3'-p 22.0 1.7E+02 0.0036 28.0 5.2 56 590-645 12-94 (166)
120 COG1030 NfeD Membrane-bound se 22.0 1.7E+02 0.0037 32.5 5.8 69 549-632 26-95 (436)
121 cd00379 Ribosomal_L10_P0 Ribos 21.8 4.1E+02 0.0088 24.6 7.8 63 566-646 4-66 (155)
122 PRK03562 glutathione-regulated 21.8 1.2E+03 0.026 27.3 13.3 42 590-646 423-464 (621)
123 TIGR01016 sucCoAbeta succinyl- 21.5 7.8E+02 0.017 26.8 11.0 87 563-666 293-383 (386)
124 TIGR02324 CP_lyasePhnL phospho 21.2 4.9E+02 0.011 25.6 8.7 46 590-636 167-212 (224)
125 cd05797 Ribosomal_L10 Ribosoma 21.2 4.2E+02 0.0092 24.8 7.8 49 591-646 20-68 (157)
126 cd03238 ABC_UvrA The excision 20.9 3.2E+02 0.0069 26.4 6.9 44 591-635 108-151 (176)
127 PRK09757 PTS system N-acetylga 20.9 6.7E+02 0.015 26.1 9.6 28 210-237 163-190 (267)
128 cd00851 MTH1175 This uncharact 20.9 2.1E+02 0.0045 24.3 5.2 47 615-664 55-102 (103)
129 PRK14046 malate--CoA ligase su 20.1 7.5E+02 0.016 27.2 10.4 90 563-669 293-386 (392)
130 PRK12996 ulaA PTS system ascor 20.0 4.5E+02 0.0097 29.6 8.4 108 140-247 157-285 (463)
131 PF14188 DUF4311: Domain of un 20.0 1.8E+02 0.004 27.8 4.7 19 141-159 147-165 (213)
No 1
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.7e-112 Score=966.83 Aligned_cols=619 Identities=39% Similarity=0.655 Sum_probs=558.3
Q ss_pred ccccccCCCCCchHHHHHHhhccccCCCCcccccccCc--hHHHHHHHHhhcccccccccCCCh-hhhHhhHHHHHHHHH
Q 005883 46 ELHPVCLPPHVTTWQKLNHRLREIFFPDDPLHIFKDQS--WRRKLVLAFQYVFPILRWAPHYSL-SLFRSDLIAGLTIAS 122 (672)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~pi~~wl~~Y~~-~~l~~D~~aGltv~~ 122 (672)
..+.++.|++++..++.++..++..+.+++.++++++. ++.++.+.++++|||++|+|+|++ +++.+|++||+|+|+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Pil~Wlp~Y~~~~~l~~DliaGltvg~ 92 (665)
T KOG0236|consen 13 SRASVDTPTFDSSNEEEKSSVENTPTRKDKSERFRNKQRCSSNKFLRSLLSLLPILEWLPKYSLKEWLLGDLIAGLTVGS 92 (665)
T ss_pred ccccccCCCCCcchhhhhccccCccccccHHHHhhccccccHHHHHHHHHhhccHhhhhhcCCchhhchHHHhcCceeee
Confidence 46677788888888888888888776677777777665 467899999999999999999999 779999999999999
Q ss_pred HHHhhHHHHHHHhCCCchhhhhhhhhhhhhhhhccCCcccccchhhHHHHHHHHhhhccccCCC---chhHHHHHHHHHH
Q 005883 123 LAIPQGISYAKLANLQPIIGLYSSFVPPIVYSVLGSSRHIGIGPVSVASLVMGTMLDGEVSHSN---KKDLYLELAFTST 199 (672)
Q Consensus 123 ~~iPq~~aya~laglpp~~GLyss~v~~liy~l~Gss~~~~~Gp~a~~sl~~~~~v~~~~~~~~---~~~~~~~~a~~~t 199 (672)
+++||+||||++||+||+|||||+|+|+++|++||+|||+++||+|++|+|+++++++..++.. ++..+++++.++|
T Consensus 93 l~VPQ~iaYa~la~lppiyGLYssf~~~~iY~~fGtsr~isiG~~av~sLmv~~~v~~~v~~~~~~~~~~~~i~va~~lt 172 (665)
T KOG0236|consen 93 LSVPQGLAYALLAGLPPIYGLYSSFFPPLIYAIFGTSRHVSIGPFAVVSLMVGTVVSQVVLSEAPSNDIATTIQVATTLT 172 (665)
T ss_pred eecchHHHHHHHcCCChHHHHHHHHHHHHHheeccCCCcccccHHHHHHHHHHHHHHHHHhccCCCcCcchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988876654433 4567789999999
Q ss_pred HHHHHHHHHHHHhhhcchhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCCCChHHHHH---HHHhccccchhHHH
Q 005883 200 LFAGLFQASLGIFRLGFIIDFLSKATLIGFMAGAAVIVSLQQLKGLLGITHFTSDMELIPVLE---SVFNSIKEWKWETI 276 (672)
Q Consensus 200 ~l~Gv~~~~lG~lrlg~l~~~lp~~vi~Gf~~g~gl~i~~~ql~~~lG~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 276 (672)
|++|++|++||+|||||+++|+|+|++.||++|+|++++++|+|.++|+++.+++.+....+. ..+.+.++. |.++
T Consensus 173 ~l~Giiq~~mG~lrLGfl~~~lS~~~l~GFt~gaa~~I~~sQlk~llGi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 251 (665)
T KOG0236|consen 173 FLTGIIQLILGLLRLGFLVRFLSEPALSGFTTGAALHIVTSQLKVLLGITSFPRHSGPGSIVFIVFDLLANLPKT-LATL 251 (665)
T ss_pred HHHHHHHHHHHHHhcChHHHHccHHHHhHhhhhhhhhhhHHhhHhhccccccCCCCCceeEEEeeHHhhhccccc-chhh
Confidence 999999999999999999999999999999999999999999999999996666555544433 334444333 7899
Q ss_pred HHHHHHHHHHHHHHH-hhhcCCcccccccchhHHHHHHHHHHHHHhhCCCC-CeeEeecCCCCCCCCCCCcccCChhhHH
Q 005883 277 VMGFCFLIFLLVARF-ISTRKPRLFWVSAAAPLTSVILSSLLIFLLKSKLK-HVSIIGHLPKGVNPTSENKLYFHGPHLQ 354 (672)
Q Consensus 277 ~ig~~~l~~ll~~~~-~~~r~~~~~~i~~~~~Li~vi~~t~is~~~~~~~~-~v~~vg~ip~glp~p~~p~~~~~~~~~~ 354 (672)
++|++++++++..|. ..++.++++|+|+|+++++++++|+++|.++.+++ ...+++++|.|+|+|++|.+++..
T Consensus 252 ~~~l~~l~~L~~~k~~~~~~~~k~~~v~~~~~li~vIi~T~~~~~~~~~~~~~~~~~~~i~~g~~~~~lp~~~~~~---- 327 (665)
T KOG0236|consen 252 VLSLIFLVVLLLTKELNPKFKKKLFSVPIPFELIVVIIGTLISYIFRLEGRYGPIIVGEIPRGFPPPSLPPLSLTP---- 327 (665)
T ss_pred hhHHHHHHHHHHHHHhhhhhcccceeecccHHHHHHHHHHHHHHHhccccccCCeeeccCCCCCCCCCCCChhhhH----
Confidence 999999999999995 44455666679999999999999999999998764 556667999999999999888754
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccCCChhhhhHhhhhhhhhccCcccccccchhhHHHhhhCCCchhHHHHH
Q 005883 355 LAIKTGIITGILSLTEGIAVGRTFASLHNYQVDGNKEMIAIGFMNIVGCCFSCYVTTGSFSRSAVNYNAGAKTIFSNIVM 434 (672)
Q Consensus 355 ~~~~~ai~~~iv~l~e~ia~~~~~a~~~~~~id~nqEl~a~Gi~Niv~s~fg~~p~t~s~srSav~~~~G~rT~ls~iv~ 434 (672)
..+..++.+++++++|+++++|+++++++|++|.||||+|+|++|++||||+|||+|++++||++|.++|+|||++|+++
T Consensus 328 ~~~~~~~~i~iva~~~~iai~k~fa~~~~y~vd~nqELiAlG~~Ni~sSff~~~p~tgs~sRSav~~~sG~~T~~s~i~~ 407 (665)
T KOG0236|consen 328 QVIPDAFAIAIVALLEHIAIGKSFASLHGYKVDSNQELIALGISNILSSFFGCYPTTGSFSRSAVNIKSGGRTQVAGIVS 407 (665)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeCCChHHHHHHHHHHhhhhhceEcccchhhHHHHHhhcCCcchHHHHHH
Confidence 55666777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhchHHHHHHHHHHHHhc-cCCHHHHHHHhhcCchhhhHHHhhhhhhhhhhhhhhHHHHHHHHHH
Q 005883 435 AATVLVTLLFLMPLFHYTPDFVLAAIIITAVVG-LVDYKAALRLWKLDKLDFVACCCSFFGVLFISVQIGLAIAVGVSVF 513 (672)
Q Consensus 435 a~~~ll~ll~l~~l~~~iP~~vLaaiii~~~~~-li~~~~~~~l~k~~~~d~~v~~~t~~~~~~~~v~~Gl~~gv~~sl~ 513 (672)
++++++++++++|+|+|+|+|+||+|+++++.+ ++++++++++||.+|.|+++|++|++++++.++++|+++||++|++
T Consensus 408 ~~~vl~~l~~l~p~f~~iP~~vLaaIIi~a~~~~l~~~~~~~~lwr~~k~D~~~~~~t~~~~i~~~ve~Glligv~~s~~ 487 (665)
T KOG0236|consen 408 AALVLLALLFLGPLFYYIPKCVLAAIIISALIGMLIQLEDLKPLWRLSKIDLLIWVVTFFTTIFLSLEIGLLIGVAFSLF 487 (665)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhHHHhhhhhhhhheeCCHHHHHHHHHHhheeeEehhhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999 6799999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCeeEeeeccCCcccccccccccccCCCCEEEEEecCceEEechHHHHHHH--HHHHhhhh---hhhccccC
Q 005883 514 KIILHVTRPNTVVLGNIPGTQIFRSLNHYENATRVPSFLILSIESPIFFANSLYLQERI--SRWVRGEE---NRIRENNE 588 (672)
Q Consensus 514 ~~l~~~~~p~~~~lg~~~~t~~~r~~~~~~~~~~~~~v~Iirl~g~L~F~Na~~~~~~i--~~~i~~~~---~~~~~~~~ 588 (672)
.+++|.+||++..+|+++++++|++.+||+++++.++++|+|+++|++|.|.+.+++++ .+++++.+ +..++...
T Consensus 488 ~ii~~~~~p~~~~l~~~~~t~~~~~~~~y~~~~~~~gi~i~r~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (665)
T KOG0236|consen 488 FIILRSQRPRISLLGRIPRTNIYRDINQYRELKEIPGIKIFRISSPLLFGNVESFEKKLERLKYLRKEEVLENSARELHE 567 (665)
T ss_pred HHHHHhcCcchhhhcccCCCccccchhhcchhhccCceEEEEeccceeeccHHHHHHHHHHHHhhhhcccccCccccccc
Confidence 99999999999999999999999999999999999999999999999999999998887 35555431 11122222
Q ss_pred CCccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEEEEEeCCHhHHHHHHhCCCccccCCCccccCHHHHHHHHHhhc
Q 005883 589 SALKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQLALVNLVGTVMEKLHQSKTLDSFRSKGLYLTVGEAVDDLSSSW 668 (672)
Q Consensus 589 ~~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~~~v~~~L~~sg~~~~~~~~~if~tv~eAv~~~~~~l 668 (672)
++.+++|+||+++++||++|+.+|+++.+++++++++++++|++++++++|+++++.+.++++++|+|++||++.|+.++
T Consensus 568 ~~~~~vild~s~v~~iD~~g~~~L~~l~~~~~~~~i~~~~~n~~~~v~~~l~~~~~~~~~~~~~~f~tv~~av~~~~~~~ 647 (665)
T KOG0236|consen 568 NSIHSVILDCSGVSFIDTSGASALKSLFKDLKTRGVQVLLANCPSSVREKLSKAGFFDFIGKDNLFLSVHDAVLDAVSEL 647 (665)
T ss_pred CcceEEEEECCccchhhHHHHHHHHHHHHHHHhcCcEEEEeCCCHHHHHHHHhhccccccchhhhhccHHHHHHHHHHhh
Confidence 35899999999999999999999999999999999999999999999999999999899999999999999999999877
Q ss_pred c
Q 005883 669 K 669 (672)
Q Consensus 669 ~ 669 (672)
+
T Consensus 648 ~ 648 (665)
T KOG0236|consen 648 S 648 (665)
T ss_pred h
Confidence 6
No 2
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=100.00 E-value=4e-101 Score=875.49 Aligned_cols=560 Identities=44% Similarity=0.758 Sum_probs=522.8
Q ss_pred cccccccCCChhhhHhhHHHHHHHHHHHHhhHHHHHHHhCCCchhhhhhhhhhhhhhhhccCCcccccchhhHHHHHHHH
Q 005883 97 PILRWAPHYSLSLFRSDLIAGLTIASLAIPQGISYAKLANLQPIIGLYSSFVPPIVYSVLGSSRHIGIGPVSVASLVMGT 176 (672)
Q Consensus 97 pi~~wl~~Y~~~~l~~D~~aGltv~~~~iPq~~aya~laglpp~~GLyss~v~~liy~l~Gss~~~~~Gp~a~~sl~~~~ 176 (672)
|+++|+++|+++++++|++||+|++++.+||+||||.+||+||++|||++++|+++|++||+||++++||++++|+++++
T Consensus 1 p~~~wl~~y~~~~l~~Di~aGltv~~~~iP~~~ayA~laglpp~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~ 80 (563)
T TIGR00815 1 PVLRWLPHYRLKKFKGDLMAGLTVGILLIPQAMAYAILAGLSPIYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGS 80 (563)
T ss_pred ChhhhhhhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCCCC
Q 005883 177 MLDGEVSHSNKKDLYLELAFTSTLFAGLFQASLGIFRLGFIIDFLSKATLIGFMAGAAVIVSLQQLKGLLGITHFTSDME 256 (672)
Q Consensus 177 ~v~~~~~~~~~~~~~~~~a~~~t~l~Gv~~~~lG~lrlg~l~~~lp~~vi~Gf~~g~gl~i~~~ql~~~lG~~~~~~~~~ 256 (672)
++.+++.+......+.+++.++++++|++|+++|++|+|++++|+|+||+.||++|+|++|+.+|++.++|++..+...+
T Consensus 81 ~v~~~~~~~~~~~~~~~~a~~l~~l~Gi~~~~~g~lrlG~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~G~~~~~~~~~ 160 (563)
T TIGR00815 81 VIARVGLQYLFDCDAIRLAFTLTLLAGIFQVILGLLRLGFLIEFLSHAVISGFMTGAAITIGLSQLKGLLGISIFNTRTD 160 (563)
T ss_pred HHHHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 99988754433346788999999999999999999999999999999999999999999999999999999986434456
Q ss_pred hHHHHHHHHhccccc---hhHHHHHHHHHHHHHHHHHHhhhcCCcccccccchhHHHHHHHHHHHHHhhCCCCCeeEeec
Q 005883 257 LIPVLESVFNSIKEW---KWETIVMGFCFLIFLLVARFISTRKPRLFWVSAAAPLTSVILSSLLIFLLKSKLKHVSIIGH 333 (672)
Q Consensus 257 ~~~~~~~~~~~~~~~---~~~~~~ig~~~l~~ll~~~~~~~r~~~~~~i~~~~~Li~vi~~t~is~~~~~~~~~v~~vg~ 333 (672)
+++.+.+.+.+++++ ||.++++|++++++++..|++.+|+++..+.+.|.+|+++++++++++.++.+++++.++|+
T Consensus 161 ~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~p~~li~vi~~~~~~~~~~~~~~~~~~~g~ 240 (563)
T TIGR00815 161 TLGVVISTWAGLPNTHNWNWCTLVIGLVLLLFLLYTKKLGKRNKKLLFAPAVAPLLVVILATLAVTIGLHKKQGVSILGH 240 (563)
T ss_pred hHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhccchhcccccHHHHHHHHHHHHHHHHccCCCCeEEEee
Confidence 777777777777665 99999999999999999998888888877778889999999999999999888899999999
Q ss_pred CCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccCCChhhhhHhhhhhhhhccCccccccc
Q 005883 334 LPKGVNPTSENKLYFHGPHLQLAIKTGIITGILSLTEGIAVGRTFASLHNYQVDGNKEMIAIGFMNIVGCCFSCYVTTGS 413 (672)
Q Consensus 334 ip~glp~p~~p~~~~~~~~~~~~~~~ai~~~iv~l~e~ia~~~~~a~~~~~~id~nqEl~a~Gi~Niv~s~fg~~p~t~s 413 (672)
+|.|+|.+..|.++ +..+...++.++.+++++++|+++++|++++++||++|+|||++++|++|+++|+|||+|++++
T Consensus 241 ip~g~p~~~~~~~~--~~~~~~l~~~a~~ia~v~~~e~l~~a~~~~~~~~~~~d~n~El~a~G~~N~~~~~fg~~p~~~s 318 (563)
T TIGR00815 241 IPSGLSFFPPITLD--WELLPTLAPDAIAIAIVGLIESIAIARSFARMTGYKIDANQELVAQGIANIVGSFFSCYPATGS 318 (563)
T ss_pred cCCCCCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHhhHHHHHHHHhCccCCCCc
Confidence 99999877777654 4678889999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHhhhCCCchhHHHHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHhccCCHHHHHHHhhcCchhhhHHHhhhh
Q 005883 414 FSRSAVNYNAGAKTIFSNIVMAATVLVTLLFLMPLFHYTPDFVLAAIIITAVVGLVDYKAALRLWKLDKLDFVACCCSFF 493 (672)
Q Consensus 414 ~srSav~~~~G~rT~ls~iv~a~~~ll~ll~l~~l~~~iP~~vLaaiii~~~~~li~~~~~~~l~k~~~~d~~v~~~t~~ 493 (672)
++||++|+++|+|||++++++++++++++++++|+++|+|+++||+++++++++|+++++++++||.++.|+.+|+++++
T Consensus 319 ~srs~~~~~~G~~t~~a~i~~~~~~l~~~l~~~~~l~~iP~~~la~ili~~~~~l~~~~~~~~~~~~~~~d~~i~~~~~~ 398 (563)
T TIGR00815 319 LSRTAVNAKAGCRTQLSGVVTAIVVLLVLLVLTPLFYYIPQAALAAIIISAVRGLIDYKELYKLWKADKMDFVVWLVTFF 398 (563)
T ss_pred chHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHhcccCHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHhhCCCeeEeeeccCCcccccccccccccCCCCEEEEEecCceEEechHHHHHHHH
Q 005883 494 GVLFISVQIGLAIAVGVSVFKIILHVTRPNTVVLGNIPGTQIFRSLNHYENATRVPSFLILSIESPIFFANSLYLQERIS 573 (672)
Q Consensus 494 ~~~~~~v~~Gl~~gv~~sl~~~l~~~~~p~~~~lg~~~~t~~~r~~~~~~~~~~~~~v~Iirl~g~L~F~Na~~~~~~i~ 573 (672)
++++.|++.|+++|+++|++.+++|.+||+..++|++++++.|||.++++++++.|+++++|++|+|+|+|++++++++.
T Consensus 399 ~~~~~~~~~Gi~vGv~~s~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~I~r~~g~L~F~na~~~~~~l~ 478 (563)
T TIGR00815 399 GVVFTSIEIGLLVGVALSAAFLLLRIARPRGAVLGRVPGTEVYRSIKQYPNARPPPGILVYRVDGPLYFANAEDLKDRLL 478 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeeecCCCCcccchhhCcccCCCCCEEEEEcCCceEeCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999998
Q ss_pred HHHhhhhhhhccccCCCccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEEEEEeCCHhHHHHHHhCCCccccCCCcc
Q 005883 574 RWVRGEENRIRENNESALKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQLALVNLVGTVMEKLHQSKTLDSFRSKGL 653 (672)
Q Consensus 574 ~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~~~v~~~L~~sg~~~~~~~~~i 653 (672)
+.++++.++ +++.++.+++|+||++|+++|+||+++|.++.++++++|+++.+++.++++++.|+++|+.+.++++++
T Consensus 479 ~~~~~~~~~--~~~~~~~~~vIlD~~~V~~iDsSg~~~L~~l~~~l~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~~ 556 (563)
T TIGR00815 479 KRIEDETRR--ELERPPLQVVILDMSAVPHLDTSGIHALEELRKELKARGIQLLLANPNKAVRSTLKRGGLVELIGEEHF 556 (563)
T ss_pred HHHhhhccc--cccCCCceEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEecCChHHHHHHHHCCchhhcCCcce
Confidence 877643211 112235799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHH
Q 005883 654 YLTVGEA 660 (672)
Q Consensus 654 f~tv~eA 660 (672)
|+|++||
T Consensus 557 f~s~~~A 563 (563)
T TIGR00815 557 FPSVSDA 563 (563)
T ss_pred eCChhhC
Confidence 9999997
No 3
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.1e-92 Score=787.46 Aligned_cols=547 Identities=31% Similarity=0.516 Sum_probs=513.8
Q ss_pred HhhcccccccccCCChhhhHhhHHHHHHHHHHHHhhHHHHHHHhCCCchhhhhhhhhhhhhhhhccCCcccccchhhHHH
Q 005883 92 FQYVFPILRWAPHYSLSLFRSDLIAGLTIASLAIPQGISYAKLANLQPIIGLYSSFVPPIVYSVLGSSRHIGIGPVSVAS 171 (672)
Q Consensus 92 ~~~~~pi~~wl~~Y~~~~l~~D~~aGltv~~~~iPq~~aya~laglpp~~GLyss~v~~liy~l~Gss~~~~~Gp~a~~s 171 (672)
+.+++|+.+|.+.|+.+|+++|++||+|+|++++||+||||..||+||++|||++++++++|++||+||++++||++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~Dl~AGltva~valP~ama~a~~aGv~p~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~ 82 (554)
T COG0659 3 LRSEIPTLKWLPYYFRSWLRGDLLAGLTVAAVALPLAMAFAIAAGVPPEAGLYASIVAGIIYALFGGSRGLISGPTGAFA 82 (554)
T ss_pred chhhccHHHhccccchhhhHHHHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCccceeccchhhH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhccchhHHHHHHHHHHHHHHHHhhhhhhCcccc
Q 005883 172 LVMGTMLDGEVSHSNKKDLYLELAFTSTLFAGLFQASLGIFRLGFIIDFLSKATLIGFMAGAAVIVSLQQLKGLLGITHF 251 (672)
Q Consensus 172 l~~~~~v~~~~~~~~~~~~~~~~a~~~t~l~Gv~~~~lG~lrlg~l~~~lp~~vi~Gf~~g~gl~i~~~ql~~~lG~~~~ 251 (672)
++++.++.+.. +.+++.++++++++|++|+++|++|||++++|+|+||+.||++|+|+.|+.+|++.++|++..
T Consensus 83 ~v~a~~i~~~~------~~g~~~~~~~tllaGv~~i~~G~lRLG~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~~ 156 (554)
T COG0659 83 VVLAAVIASLV------ETGLALAFLATLLAGVFQILLGLLRLGRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLASK 156 (554)
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999998653 356889999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCCChHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhhhcCCcccccccchhHHHHHHHHHHHHHhhCCC--CCee
Q 005883 252 TSDMELIPVLESVFNSIKEWKWETIVMGFCFLIFLLVARFISTRKPRLFWVSAAAPLTSVILSSLLIFLLKSKL--KHVS 329 (672)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~r~~~~~~i~~~~~Li~vi~~t~is~~~~~~~--~~v~ 329 (672)
. .+++..+..++++..++||.+.+++++++++++.++++.+|+| +++++++++|.++|.++.+. +| +
T Consensus 157 ~--~~~~~~~~~l~~~~~~~~~~~~~lg~~~l~il~~~~~~~~~~P--------~~liaiv~~t~i~~~~~~~~~~~G-~ 225 (554)
T COG0659 157 V--SGFWAKVSALFTVLLTINLATLLLGLLTLAILLFLPRLTPRIP--------SPLIALVLGTLIVWIFPLDSLRYG-E 225 (554)
T ss_pred c--cchHHHHHHHHHhcccccHHHHHHHHHHHHHHHHccchhhhCC--------cHHHHHHHHHHHHHHhcCCchhcc-c
Confidence 3 3378888889999999999999999999999999987766655 78999999999999998764 67 7
Q ss_pred EeecCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccCCChhhhhHhhhhhhhhccCccc
Q 005883 330 IIGHLPKGVNPTSENKLYFHGPHLQLAIKTGIITGILSLTEGIAVGRTFASLHNYQVDGNKEMIAIGFMNIVGCCFSCYV 409 (672)
Q Consensus 330 ~vg~ip~glp~p~~p~~~~~~~~~~~~~~~ai~~~iv~l~e~ia~~~~~a~~~~~~id~nqEl~a~Gi~Niv~s~fg~~p 409 (672)
+.|++|.++|.+.+|++++ +.+.+.++.++.++++++.|++.++++++.++|+++|.||||+|+|++|++++||||+|
T Consensus 226 i~~~lp~~~~~~~~P~~~~--~~~~~l~~~al~la~lg~iesllta~~~~~~~~~~~d~nrELiaqGiaNi~sglfgg~p 303 (554)
T COG0659 226 IPGSLPSGLPHFRLPNVSL--SLLLALLPYALALALLGLLESLLTAVSFDGMTGTKHDSNRELIAQGIANIASGLFGGIP 303 (554)
T ss_pred CcccCCcCCCcccCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHhhHHHHHHHHhCCcc
Confidence 8999999999999998874 77889999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHhhhCCCchhHHHHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHhccCCHHHHHHHh-hcCchhhhHH
Q 005883 410 TTGSFSRSAVNYNAGAKTIFSNIVMAATVLVTLLFLMPLFHYTPDFVLAAIIITAVVGLVDYKAALRLW-KLDKLDFVAC 488 (672)
Q Consensus 410 ~t~s~srSav~~~~G~rT~ls~iv~a~~~ll~ll~l~~l~~~iP~~vLaaiii~~~~~li~~~~~~~l~-k~~~~d~~v~ 488 (672)
+||+++||++|.++|+|||+|++++|+++++++++++|+++|||+|+|++++++++++|++|..++.++ |.+|.|+.++
T Consensus 304 ~~g~~srS~~nv~sGarT~lsgi~~a~~lll~l~~~~~~~~~IP~a~Laavli~v~~~l~~~~~~~~~~~~~~~~e~~v~ 383 (554)
T COG0659 304 ATGSISRSAINIKSGARTRLSGIIHAALLLLLLLFLAPLVSYIPLAALAAVLILVGWGLLDWSLLKPLLRKLPRGELLVL 383 (554)
T ss_pred ccchhHHHHHHHHhCCcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhccHHHHHHHHhcCCchhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998854 4889999999
Q ss_pred HhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhhCCCeeEeeeccCCcccccccccccccCCCCEEEEEecCceEEechHHH
Q 005883 489 CCSFFGVLFISVQIGLAIAVGVSVFKIILHVTRPNTVVLGNIPGTQIFRSLNHYENATRVPSFLILSIESPIFFANSLYL 568 (672)
Q Consensus 489 ~~t~~~~~~~~v~~Gl~~gv~~sl~~~l~~~~~p~~~~lg~~~~t~~~r~~~~~~~~~~~~~v~Iirl~g~L~F~Na~~~ 568 (672)
+++++++++.+++.|+.+|+++|++.++.|.+||+...+++.++.+. ++.++++..++.|++.++|++||++|+|++++
T Consensus 384 ~~t~~~tv~~~l~~GV~vGi~ls~~~~i~r~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~ri~gplfF~~~~~~ 462 (554)
T COG0659 384 LTTALLTVFFDLVIGVVVGILLACLLFIRRISRPSIVVLGRVPGPAG-SDNALKPLDEIGPGVLVYRLSGPLFFGNADRL 462 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhhccCCCccc-ccccccccccCCCCeEEEEecCceEEeeHHHH
Confidence 99999999999999999999999999999999999999998887665 67788889999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhccccCCCccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEEEEEeCCHhHHHHHHhCCCcccc
Q 005883 569 QERISRWVRGEENRIRENNESALKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQLALVNLVGTVMEKLHQSKTLDSF 648 (672)
Q Consensus 569 ~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~~~v~~~L~~sg~~~~~ 648 (672)
++++.+..++ +.+.+++|+++++++|.|+.++|+++.++++++|+++.+++.+.++++.+++.+..+..
T Consensus 463 ~~~i~~~~~~-----------~~~~~il~~~~v~~iD~ta~~al~~~~~~~~~~g~~~~i~~~~~~~~~~l~~~~~~~~i 531 (554)
T COG0659 463 ERALLGLIEE-----------RPERVILDLKSVPYIDASAAEALEDLIKELERRGIQLLIVGLSAQVLRLLRRAGLLYLV 531 (554)
T ss_pred HHHHHHHHhc-----------cCCEEEEEcccCCcCChhHHHHHHHHHHHHHHcCCEEEEeccchhhHHHHHHhcccccc
Confidence 9999886543 37899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCHHHHHHHHHhhcc
Q 005883 649 RSKGLYLTVGEAVDDLSSSWK 669 (672)
Q Consensus 649 ~~~~if~tv~eAv~~~~~~l~ 669 (672)
+.+++|+++++|++.++...+
T Consensus 532 ~~~~~f~~~~~a~~~~~~~~~ 552 (554)
T COG0659 532 GAEHIFDSVDSALEKARKLLA 552 (554)
T ss_pred ccccccchhHHHHHHHHHHhc
Confidence 988999999999999886554
No 4
>PRK11660 putative transporter; Provisional
Probab=100.00 E-value=1.5e-91 Score=797.04 Aligned_cols=524 Identities=22% Similarity=0.370 Sum_probs=473.9
Q ss_pred ccccCCChhhhHhhHHHHHHHHHHHHhhHHHHHHHhCCCchhhhhhhhhhhhhhhhccCCcccccchhhHHHHHHHHhhh
Q 005883 100 RWAPHYSLSLFRSDLIAGLTIASLAIPQGISYAKLANLQPIIGLYSSFVPPIVYSVLGSSRHIGIGPVSVASLVMGTMLD 179 (672)
Q Consensus 100 ~wl~~Y~~~~l~~D~~aGltv~~~~iPq~~aya~laglpp~~GLyss~v~~liy~l~Gss~~~~~Gp~a~~sl~~~~~v~ 179 (672)
+|+|+|+++++++|++||+|++++.+||+||||.+||+||+|||||+++|+++|++||+||++++||++.++++++.++.
T Consensus 19 ~wl~~y~~~~l~~D~iAGltv~~~~iPq~mayA~lag~pp~~GLysa~~~~~vyal~Gss~~~~~Gp~a~~~~~~~~~~~ 98 (568)
T PRK11660 19 CWKEKYTAARFTRDLIAGITVGIIAIPLAMALAIASGVPPQYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQ 98 (568)
T ss_pred HHHhcCCHHhhhHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCcccChhHHHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCCCChHH
Q 005883 180 GEVSHSNKKDLYLELAFTSTLFAGLFQASLGIFRLGFIIDFLSKATLIGFMAGAAVIVSLQQLKGLLGITHFTSDMELIP 259 (672)
Q Consensus 180 ~~~~~~~~~~~~~~~a~~~t~l~Gv~~~~lG~lrlg~l~~~lp~~vi~Gf~~g~gl~i~~~ql~~~lG~~~~~~~~~~~~ 259 (672)
+.+ .+.+..+++++|++|+++|++|+|++++|+|+||+.||++|+|++|+.+|++.++|++..+...++++
T Consensus 99 ~~~---------~~~~~~~~~l~Gii~~l~gllrlG~l~~fip~pVi~Gf~~g~al~I~~~Ql~~~lG~~~~~~~~~~~~ 169 (568)
T PRK11660 99 QFG---------LAGLLVATLMSGIILILMGLARLGRLIEYIPLSVTLGFTSGIGIVIATLQIKDFFGLQMAHVPEHYLE 169 (568)
T ss_pred Hhh---------HHHHHHHHHHHHHHHHHHHHHhhhHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 542 34566789999999999999999999999999999999999999999999999999986544467888
Q ss_pred HHHHHHhccccchhHHHHHHHHHHHHHHHHHHhhhcCCcccccccchhHHHHHHHHHHHHHhhCCCCCeeEeec------
Q 005883 260 VLESVFNSIKEWKWETIVMGFCFLIFLLVARFISTRKPRLFWVSAAAPLTSVILSSLLIFLLKSKLKHVSIIGH------ 333 (672)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~r~~~~~~i~~~~~Li~vi~~t~is~~~~~~~~~v~~vg~------ 333 (672)
.+.+++++++++||.++++|++++++++.++++.+|.| .++++++++|+++|.++...++++.+|+
T Consensus 170 ~l~~~~~~l~~~~~~~~~~~~~~l~lll~~~~~~~~iP--------~~li~iiv~t~~~~~~~~~~~~v~~vg~~~~~~~ 241 (568)
T PRK11660 170 KVGALFQALPTINWGDALIGIVTLGVLILWPRLKIRLP--------GHLPALLAGTAVMGVLNLLGGHVATIGSRFHYVL 241 (568)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhhcccCc--------hHHHHHHHHHHHHHHHhccCCCceeecccccccc
Confidence 99999999999999999999999999888765544433 6799999999999999877777887775
Q ss_pred --------CCCCCCCCCCCc---------ccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccCCChhhhhHh
Q 005883 334 --------LPKGVNPTSENK---------LYFHGPHLQLAIKTGIITGILSLTEGIAVGRTFASLHNYQVDGNKEMIAIG 396 (672)
Q Consensus 334 --------ip~glp~p~~p~---------~~~~~~~~~~~~~~ai~~~iv~l~e~ia~~~~~a~~~~~~id~nqEl~a~G 396 (672)
+|.++|.+.+|. .+++...+.+.++.++.++++++.|++.+++.+++++++++|.||||+|+|
T Consensus 242 ~~g~~~~~ip~~~p~~~~p~~~~~~~~~~~~~~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~~~~~~~d~n~EL~a~G 321 (568)
T PRK11660 242 ADGSQGNGIPPLLPQFVLPWNLPGADGQPFTLSWDLIRALLPAAFSMAMLGAIESLLCAVVLDGMTGTKHSANSELVGQG 321 (568)
T ss_pred cccccccCCCCCCCCCCCCccccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHh
Confidence 666676655552 123556778888899999999999999999999999999999999999999
Q ss_pred hhhhhhhccCcccccccchhhHHHhhhCCCchhHHHHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHhccCCHHHHHH
Q 005883 397 FMNIVGCCFSCYVTTGSFSRSAVNYNAGAKTIFSNIVMAATVLVTLLFLMPLFHYTPDFVLAAIIITAVVGLVDYKAALR 476 (672)
Q Consensus 397 i~Niv~s~fg~~p~t~s~srSav~~~~G~rT~ls~iv~a~~~ll~ll~l~~l~~~iP~~vLaaiii~~~~~li~~~~~~~ 476 (672)
++|++||+|||+|++++++||++|.++|+|||++++++++++++++++++|+++|+|+++||+++++++++|++++..++
T Consensus 322 ~aNi~~~~fgg~p~~~s~srSa~n~~aGarT~la~iv~a~~~ll~ll~l~~ll~~iP~~vLa~ili~~~~~m~~~~~~~~ 401 (568)
T PRK11660 322 LGNIVAPFFGGITATAAIARSAANVRAGATSPISAVIHALLVLLALLVLAPLLSYLPLSAMAALLLMVAWNMSEAHKVVD 401 (568)
T ss_pred HHHHHHHHhCcccccchHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred Hhh-cCchhhhHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhhCCCeeEeeeccCCcccccccccccccCCCCEEEEE
Q 005883 477 LWK-LDKLDFVACCCSFFGVLFISVQIGLAIAVGVSVFKIILHVTRPNTVVLGNIPGTQIFRSLNHYENATRVPSFLILS 555 (672)
Q Consensus 477 l~k-~~~~d~~v~~~t~~~~~~~~v~~Gl~~gv~~sl~~~l~~~~~p~~~~lg~~~~t~~~r~~~~~~~~~~~~~v~Iir 555 (672)
+|| .++.|+.+|+.+++.+++.+++.|+++|+++|++.+++|.+++. ++++ .++ .++.+++.++|
T Consensus 402 ~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~Gi~~s~~~~~~~~~~~~-----~~~~------~~~---~~~~~~i~iv~ 467 (568)
T PRK11660 402 LLRHAPKDDIIVMLLCMSLTVLFDMVIAISVGIVLASLLFMRRIAEMT-----RLAP------ISV---QDVPDDVLVLR 467 (568)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc-----cccc------ccc---ccCCCcEEEEE
Confidence 877 58899999999999999999999999999999999999998864 2221 111 34567999999
Q ss_pred ecCceEEechHHHHHHHHHHHhhhhhhhccccCCCccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEEEEEeCCHhH
Q 005883 556 IESPIFFANSLYLQERISRWVRGEENRIRENNESALKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQLALVNLVGTV 635 (672)
Q Consensus 556 l~g~L~F~Na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~~~v 635 (672)
++|+|||+|++++++++++.. ++.+++|+||++|++||+||+++|+++.+++++ |++++++++++++
T Consensus 468 ~~g~L~F~n~~~l~~~l~~~~------------~~~~~VVlD~~~V~~iDssg~~~L~~l~~~l~~-g~~l~l~~l~~~v 534 (568)
T PRK11660 468 INGPLFFAAAERLFTELESRT------------EGKRIVVLQWDAVPVLDAGGLDAFQRFVKRLPE-GCELRICNLQFQP 534 (568)
T ss_pred eCCeeeeeeHHHHHHHHHhhC------------CCCCEEEEEcCCCCcccHHHHHHHHHHHHHHHC-CCEEEEecCChHH
Confidence 999999999999999987632 247899999999999999999999999999999 9999999999999
Q ss_pred HHHHHhCCCccccCCCccccCHHHHHHHHHhh
Q 005883 636 MEKLHQSKTLDSFRSKGLYLTVGEAVDDLSSS 667 (672)
Q Consensus 636 ~~~L~~sg~~~~~~~~~if~tv~eAv~~~~~~ 667 (672)
++.|+++|+.+..+.+++|+|+|||++++++.
T Consensus 535 ~~~l~~~gl~~~~~~~~if~~~~~Al~~~~~~ 566 (568)
T PRK11660 535 LRTLARAGIQPIPGRLAFYPTLREALADLLRN 566 (568)
T ss_pred HHHHHHCCChhhcCcccccCCHHHHHHHHHhh
Confidence 99999999999888889999999999999874
No 5
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=4.1e-48 Score=404.97 Aligned_cols=279 Identities=37% Similarity=0.685 Sum_probs=257.1
Q ss_pred HHHhhhcchhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCCCChHHHHHHHHhcccc-chhHHHHHHHHHHHHHH
Q 005883 209 LGIFRLGFIIDFLSKATLIGFMAGAAVIVSLQQLKGLLGITHFTSDMELIPVLESVFNSIKE-WKWETIVMGFCFLIFLL 287 (672)
Q Consensus 209 lG~lrlg~l~~~lp~~vi~Gf~~g~gl~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ig~~~l~~ll 287 (672)
||++|+|++++|+|+||+.||++|+|++++.+|++.++|++..+...+....+.++++..++ +||.+.++|+++++++.
T Consensus 1 lGllrlG~l~~~ip~pVi~Gf~~g~ai~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 80 (280)
T PF00916_consen 1 LGLLRLGFLVRFIPRPVISGFLAGIAILIIFSQLPNLLGIPVVPSHEGLFSFIRALFQLISTITNWPTLAIGLVALVFLL 80 (280)
T ss_pred CccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhccchhhhhhhhHHHHHHh
Confidence 58999999999999999999999999999999999999998544445556666667766666 59999999999999999
Q ss_pred HHHHhhhcCCcccccccchhHHHHHHHHHHHHHhhCCCCCeeEeecCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHH
Q 005883 288 VARFISTRKPRLFWVSAAAPLTSVILSSLLIFLLKSKLKHVSIIGHLPKGVNPTSENKLYFHGPHLQLAIKTGIITGILS 367 (672)
Q Consensus 288 ~~~~~~~r~~~~~~i~~~~~Li~vi~~t~is~~~~~~~~~v~~vg~ip~glp~p~~p~~~~~~~~~~~~~~~ai~~~iv~ 367 (672)
..+++.+++++.++.+.|.+++++++++++++.++.++++++.+|++|.++|+|.+|+.+++.+.+.+.++.++.+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~p~~li~vv~~~~~~~~~~~~~~~v~~~~~i~~~lp~~~~p~~~~~~~~~~~~~~~a~~ia~v~ 160 (280)
T PF00916_consen 81 IIRLLPKRLPSRFWPPIPAPLIVVVLGTLLSWLFLLDKYGVAIVGEIPSGLPPPSLPSFDISWSLILDLLPTALAIAIVG 160 (280)
T ss_pred hhhhhhhhccccccccccccceeeehhhhhhhhhhhccccccccccccccCccccCcccccccccccccchhHHHHHHHH
Confidence 99988877777777888899999999999999998888899999999999999999954444567788888899999999
Q ss_pred HHHHHHHHHHhhhcCCcccCCChhhhhHhhhhhhhhccCcccccccchhhHHHhhhCCCchhHHHHHHHHHHHHHHHhhh
Q 005883 368 LTEGIAVGRTFASLHNYQVDGNKEMIAIGFMNIVGCCFSCYVTTGSFSRSAVNYNAGAKTIFSNIVMAATVLVTLLFLMP 447 (672)
Q Consensus 368 l~e~ia~~~~~a~~~~~~id~nqEl~a~Gi~Niv~s~fg~~p~t~s~srSav~~~~G~rT~ls~iv~a~~~ll~ll~l~~ 447 (672)
+.|++.++|+++++++|++|.||||+++|++|+++|+|||+|+++++|||++|+++|+|||++++++++++++++++++|
T Consensus 161 ~~~s~~~~~~~~~~~~~~~d~n~El~a~G~aNi~s~~~gg~p~~~s~srs~~~~~~Ga~t~~s~~~~~~~~l~~l~~~~~ 240 (280)
T PF00916_consen 161 FIESLLIAKSIAKKTGYRIDPNQELIALGLANIVSGLFGGMPGSGSFSRSAVNYRAGARTRLSGLISALFVLLVLLFLAP 240 (280)
T ss_pred HHHHHHhhhhhcccccccCCcHHHHHHhhhccccchhhcccccccccccchHHHhcCcceeehhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchHHHHHHHHHHHHhccCCHHHHHHHhhcCchhhhH
Q 005883 448 LFHYTPDFVLAAIIITAVVGLVDYKAALRLWKLDKLDFVA 487 (672)
Q Consensus 448 l~~~iP~~vLaaiii~~~~~li~~~~~~~l~k~~~~d~~v 487 (672)
+++|+|+++||+++++++++++|+++++++||.+|.|+++
T Consensus 241 ~l~~iP~~~La~ili~~~~~l~~~~~~~~~~~~~~~d~~i 280 (280)
T PF00916_consen 241 LLAYIPKAVLAAILIVVGISLIDWSSLRRLWRVSKADFLI 280 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCChhheEC
Confidence 9999999999999999999999999999999999999864
No 6
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=99.96 E-value=2.2e-26 Score=245.71 Aligned_cols=383 Identities=17% Similarity=0.236 Sum_probs=297.0
Q ss_pred HHHhhcccccccccCCChhhhHhhHHHHHHHHHHHHhhHHHHHHH--------hCCCch----hhhhhhhhhhhhhhhcc
Q 005883 90 LAFQYVFPILRWAPHYSLSLFRSDLIAGLTIASLAIPQGISYAKL--------ANLQPI----IGLYSSFVPPIVYSVLG 157 (672)
Q Consensus 90 ~~~~~~~pi~~wl~~Y~~~~l~~D~~aGltv~~~~iPq~~aya~l--------aglpp~----~GLyss~v~~liy~l~G 157 (672)
+.++++|...+ +-+++|+|++||+|+++ +|+|-.. +|.|.. ....+++++++..+++.
T Consensus 4 ~~~~~~F~l~~-----~~t~vrtEiiAGlTTFl-----tM~YIl~VnP~IL~~ag~~~~av~~AT~l~a~~gs~~mgl~A 73 (436)
T COG2252 4 GDLDRFFKLKE-----HGTTVRTEVIAGLTTFL-----TMAYIVFVNPQILGAAGMPVGAVFVATCLAAAIGSIAMGLYA 73 (436)
T ss_pred hHHHHHhCccc-----cCchHHHHHHHHHHHHH-----HHHHhheecHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 34566666665 66779999999999998 6777432 566643 34667889999999997
Q ss_pred CCcccccchhhHHHHHHHHhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhccchhHHHHHHHHHHHH
Q 005883 158 SSRHIGIGPVSVASLVMGTMLDGEVSHSNKKDLYLELAFTSTLFAGLFQASLGIFRL-GFIIDFLSKATLIGFMAGAAVI 236 (672)
Q Consensus 158 ss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~a~~~t~l~Gv~~~~lG~lrl-g~l~~~lp~~vi~Gf~~g~gl~ 236 (672)
..|....-..+.++....+++..++ ..||.++.++|++|+++++++++++ .++++.+|+++..|..+|+|++
T Consensus 74 n~P~alapgmglnAfFaftvv~~~g-------i~wq~AL~aVF~sGiif~ils~t~iR~~ii~~IP~~lk~ai~aGIGlF 146 (436)
T COG2252 74 NLPIALAPGMGLNAFFAFTVVLGMG-------LSWQVALGAVFLSGIIFLLLSLTGIREWIINAIPRSLKLAIGAGIGLF 146 (436)
T ss_pred cCchhhcchhhHHHHHHHHHHHhcC-------CcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 6544444448888888888888765 2389999999999999999999998 5669999999999999999999
Q ss_pred HHHHhhhhhhCccccCCCCChHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhhhcCCcccccccchhHHHHHHHHH
Q 005883 237 VSLQQLKGLLGITHFTSDMELIPVLESVFNSIKEWKWETIVMGFCFLIFLLVARFISTRKPRLFWVSAAAPLTSVILSSL 316 (672)
Q Consensus 237 i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~r~~~~~~i~~~~~Li~vi~~t~ 316 (672)
|..-.++ -.|+-.. ++. ....+++.+.+.++++++.+++...+.. +|.+. +.+++++..++
T Consensus 147 ia~IgL~-~~Givv~-~~~--------tlv~LG~~~~p~vll~i~G~~l~~~L~~--~~i~G-------aili~i~~~t~ 207 (436)
T COG2252 147 IALIGLK-NAGIVVA-NPA--------TLVALGDFTSPGVLLAILGLLLIIVLVS--RKIKG-------AILIGILVTTI 207 (436)
T ss_pred HHHHHHh-hCCeEEe-cCc--------ceEEeecCCCchHHHHHHHHHHHHHHHH--hhccH-------hhhHHHHHHHH
Confidence 9999998 4566221 111 1233344555667777777666655533 55565 67899999999
Q ss_pred HHHHhhCCCCCeeEeecCCCCCCCCCCCcccCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC------cccCCC
Q 005883 317 LIFLLKSKLKHVSIIGHLPKGVNPTSENKLYFHG-PHLQLAIKTGIITGILSLTEGIAVGRTFASLHN------YQVDGN 389 (672)
Q Consensus 317 is~~~~~~~~~v~~vg~ip~glp~p~~p~~~~~~-~~~~~~~~~ai~~~iv~l~e~ia~~~~~a~~~~------~~id~n 389 (672)
+++..+.....-...+..|.-. |.+.++++.+ ......++..+....+.++|++++....+++-| ...+.+
T Consensus 208 ~g~~~g~~~~~~~~~~~~p~~~--~~~~~~d~~~~~~~~~~~~~if~f~~~~~FD~~GTl~gv~~~ag~~~~~g~~~~~~ 285 (436)
T COG2252 208 LGIILGIDVHFGGLVGAPPSLS--PIFGQLDLSGNLSLAAFAPVIFTFFFVDLFDTLGTLIGVASKAGLLDKNGKMPRIG 285 (436)
T ss_pred HHHHhcccccccccccCCCCcc--chhhHhhhccchhhHHHHHHHHHHHHHHHhcchHHHHHHHHhcCCcCCCCCccccc
Confidence 9999985433222233333222 2233555544 344556667788889999999988888877533 235788
Q ss_pred hhhhhHhhhhhhhhccCcccccccchhhHHHhhhCCCchhHHHHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHhccC
Q 005883 390 KEMIAIGFMNIVGCCFSCYVTTGSFSRSAVNYNAGAKTIFSNIVMAATVLVTLLFLMPLFHYTPDFVLAAIIITAVVGLV 469 (672)
Q Consensus 390 qEl~a~Gi~Niv~s~fg~~p~t~s~srSav~~~~G~rT~ls~iv~a~~~ll~ll~l~~l~~~iP~~vLaaiii~~~~~li 469 (672)
|.+.+++++.++|+++|+.|++. +-+|+.....|+||.++.++.++++++. +|++|++..+|..+.++++++++..|.
T Consensus 286 ~al~~D~v~t~~ga~~GtS~~t~-yIESaaGva~GgrTGltavv~g~lFl~~-lf~~Pl~~~vP~~AtapaLi~vG~lM~ 363 (436)
T COG2252 286 KALLADSVATVVGALFGTSTVTA-YIESAAGVAAGGRTGLTAVVTGLLFLLS-LFFSPLAALVPGYATAPALIIVGALML 363 (436)
T ss_pred hHHHHhHHHHHHHHhcCCcchhh-hhhcccccccccccccHHHHHHHHHHHH-HHHHHHHHhCcHhhhhHHHHHHHHHHH
Confidence 99999999999999999999775 9999999999999999999999999998 699999999999999999999998888
Q ss_pred CHHHHHHHhhcCchhhhHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 005883 470 DYKAALRLWKLDKLDFVACCCSFFGVLFISVQIGLAIAVGVSVFKIIL 517 (672)
Q Consensus 470 ~~~~~~~l~k~~~~d~~v~~~t~~~~~~~~v~~Gl~~gv~~sl~~~l~ 517 (672)
..+-++|+.|+...+.+|+..+++.+.+.+.-|+.++++.+..
T Consensus 364 -----~~v~~id~~d~~ea~PaF~tiv~mplTySIa~Gia~Gfi~y~i 406 (436)
T COG2252 364 -----SSVKQIDWSDFTEAVPAFLTIVMMPLTYSIADGIAFGFISYVI 406 (436)
T ss_pred -----hhhccCCchhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3677899999999999999999999999999998888887643
No 7
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=99.96 E-value=3e-26 Score=251.83 Aligned_cols=321 Identities=17% Similarity=0.146 Sum_probs=239.7
Q ss_pred HHHHHhhHHHHHHHhCCCc-------hhhhhhhhhhhhhhh----hccCCcccccchhhHHHHHHHHhhhccccCCCchh
Q 005883 121 ASLAIPQGISYAKLANLQP-------IIGLYSSFVPPIVYS----VLGSSRHIGIGPVSVASLVMGTMLDGEVSHSNKKD 189 (672)
Q Consensus 121 ~~~~iPq~~aya~laglpp-------~~GLyss~v~~liy~----l~Gss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~ 189 (672)
+.+.+|.-++-+ .|+|+ +..+.++.++++++. .+|++.++..||.......+.....+
T Consensus 11 ~~i~~p~i~~~a--~gl~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~~~~~--------- 79 (406)
T TIGR03173 11 GAVAVPLIVGGA--LGLSAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIAIGAG--------- 79 (406)
T ss_pred HHHHHHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHHHhhh---------
Confidence 456667665443 58887 578899999999997 68999999999966433222222111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCCCChHHHHHHHHhccc
Q 005883 190 LYLELAFTSTLFAGLFQASLGIFRLGFIIDFLSKATLIGFMAGAAVIVSLQQLKGLLGITHFTSDMELIPVLESVFNSIK 269 (672)
Q Consensus 190 ~~~~~a~~~t~l~Gv~~~~lG~lrlg~l~~~lp~~vi~Gf~~g~gl~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~~~ 269 (672)
..++.+..+.+++|++++++|. +++++.+++|+.++..++..+|+.+...+++...|.... .+
T Consensus 80 ~~~~~~~ga~~v~Gii~illg~-~~~~l~~~iPp~v~G~~i~~IGl~l~~~~~~~~~g~~~~----------------~~ 142 (406)
T TIGR03173 80 GGLGAIFGAVIVAGLFVILLAP-FFSKLVRFFPPVVTGTVITLIGLSLMPVAINWAAGGAGA----------------PD 142 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHhccCCCc----------------cc
Confidence 2378899999999999999994 789999999998888899999999999999877654310 01
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhhcCCcccccccchhHHHHHHHHHHHHHhhCCCCCeeEeecCCC-CCCC---CCCCc
Q 005883 270 EWKWETIVMGFCFLIFLLVARFISTRKPRLFWVSAAAPLTSVILSSLLIFLLKSKLKHVSIIGHLPK-GVNP---TSENK 345 (672)
Q Consensus 270 ~~~~~~~~ig~~~l~~ll~~~~~~~r~~~~~~i~~~~~Li~vi~~t~is~~~~~~~~~v~~vg~ip~-glp~---p~~p~ 345 (672)
..++.+..+++++++++++.+++.|++.| .++.++++++++++++.++..+ .+.+++.|. .+|. +..|+
T Consensus 143 ~~~~~~~~l~l~~l~~~il~~~~~~~~~~-----~~aiLi~ivvg~iva~~~g~~~--~~~i~~~~~~~~P~~~~~~~P~ 215 (406)
T TIGR03173 143 FGSPQNLGLALLTLVIILLLNRFGKGFLR-----SIAVLLGLVVGTIVAAALGMVD--FSGVAEAPWFALPTPFHFGAPT 215 (406)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhhhHHH-----HhHHHHHHHHHHHHHHHhcCCC--chhhccCCeeeCCCCCcCCCCe
Confidence 13445567888777777666654444322 2388999999999999987522 222333222 2332 33444
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccC---CChhhhhHhhhhhhhhccCcccccccchhh-HHHh
Q 005883 346 LYFHGPHLQLAIKTGIITGILSLTEGIAVGRTFASLHNYQVD---GNKEMIAIGFMNIVGCCFSCYVTTGSFSRS-AVNY 421 (672)
Q Consensus 346 ~~~~~~~~~~~~~~ai~~~iv~l~e~ia~~~~~a~~~~~~id---~nqEl~a~Gi~Niv~s~fg~~p~t~s~srS-av~~ 421 (672)
+++ . .+...+.++++++.|+++..++.++..|++.| .|||+.++|++|+++++||++|+++ ++++ +++.
T Consensus 216 f~~--~----~~~~~~~~~lv~~~esig~~~a~~~~~g~~~~~~~~~~~l~~~Gi~~i~aglfG~~p~t~-~~~~~~~~~ 288 (406)
T TIGR03173 216 FDL--V----AILTMIIVYLVSMVETTGDFLALGEITGRPITEKDLAGGLRADGLGSALGGLFNTFPYTS-FSQNVGLVQ 288 (406)
T ss_pred eCH--H----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhccchHHhccHHHHHHHHhCCCCCcc-hhhhHHHHH
Confidence 433 2 23334567889999999999999888887665 4799999999999999999999887 6664 6778
Q ss_pred hhCCCchhHHHHHHHHHHHHHHH--hhhhhhhchHHHHHHHHHHHHhccCCHHHHHHHhhcCchh
Q 005883 422 NAGAKTIFSNIVMAATVLVTLLF--LMPLFHYTPDFVLAAIIITAVVGLVDYKAALRLWKLDKLD 484 (672)
Q Consensus 422 ~~G~rT~ls~iv~a~~~ll~ll~--l~~l~~~iP~~vLaaiii~~~~~li~~~~~~~l~k~~~~d 484 (672)
.+|++||++++++|+++++..++ +++++.++|.++++++.+. .++++....++.++|.+..|
T Consensus 289 ~tg~~sr~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l~-~~~~i~~~g~~~l~~~~~~~ 352 (406)
T TIGR03173 289 LTGVKSRYVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGLV-MFGMVAASGIRILSKVDFDR 352 (406)
T ss_pred HhCCCchHhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHHHHHHhCcccC
Confidence 89999999999999998888776 8999999999999998774 89999888888887766543
No 8
>PRK10720 uracil transporter; Provisional
Probab=99.94 E-value=7e-25 Score=241.20 Aligned_cols=355 Identities=12% Similarity=0.117 Sum_probs=251.2
Q ss_pred HHHHHhhHHHHHHHhCCCchhhhhhhhhhhhhhhhccC-Ccccccchhh-HHHHHHHHhhhccccCCCchhHHHHHHHHH
Q 005883 121 ASLAIPQGISYAKLANLQPIIGLYSSFVPPIVYSVLGS-SRHIGIGPVS-VASLVMGTMLDGEVSHSNKKDLYLELAFTS 198 (672)
Q Consensus 121 ~~~~iPq~~aya~laglpp~~GLyss~v~~liy~l~Gs-s~~~~~Gp~a-~~sl~~~~~v~~~~~~~~~~~~~~~~a~~~ 198 (672)
+.+.+|.-+ |+++...+..+.++++++.+.++ ..++..||.. .++.+.... .. .++.+..+
T Consensus 30 ~~i~~Pli~------gl~~~~~l~~sGi~TliQ~~~~g~rlP~~~G~sfa~i~~~~~~~--~~---------~~~~~lga 92 (428)
T PRK10720 30 ATVLVPILF------HINPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLL--PL---------GYEVALGG 92 (428)
T ss_pred HHHHHHhhc------CCCHHHHHHHHHHHHHHHHHhccCccceEEeCcHHHHHHHHHHH--Hc---------cHHHHHHH
Confidence 555666632 88999999999999999998774 7788888843 333332211 11 26788999
Q ss_pred HHHHHHHHHHHHHh--hh--cchhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCCCChHHHHHHHHhccccchhH
Q 005883 199 TLFAGLFQASLGIF--RL--GFIIDFLSKATLIGFMAGAAVIVSLQQLKGLLGITHFTSDMELIPVLESVFNSIKEWKWE 274 (672)
Q Consensus 199 t~l~Gv~~~~lG~l--rl--g~l~~~lp~~vi~Gf~~g~gl~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (672)
.+++|+++++++++ |+ +++.+++|+.+++.+++.+|+.+....++. .|.... .. +..++.
T Consensus 93 v~v~Glv~ills~~~~~~g~~~l~~~fPp~v~G~~i~lIGl~L~~~~~~~-~g~~~~--~~-------------~~~~~~ 156 (428)
T PRK10720 93 FIMCGVLFCLVALIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGM-AGLLPA--EG-------------QTPDSK 156 (428)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHhHHHHHhh-ccccCC--CC-------------cccchH
Confidence 99999999999997 33 478999999999999999999999887763 332110 00 123556
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCcccccccchhHHHHHHHHHHHHHhhCCCCCeeEeecC-CCCCCCCCCCcccCChhhH
Q 005883 275 TIVMGFCFLIFLLVARFISTRKPRLFWVSAAAPLTSVILSSLLIFLLKSKLKHVSIIGHL-PKGVNPTSENKLYFHGPHL 353 (672)
Q Consensus 275 ~~~ig~~~l~~ll~~~~~~~r~~~~~~i~~~~~Li~vi~~t~is~~~~~~~~~v~~vg~i-p~glp~p~~p~~~~~~~~~ 353 (672)
++.+++++++++++.....|++.|.+ +.++++++++++++.++.. +++.+++. +.++|.+..|+++ ...+
T Consensus 157 ~~~lalv~l~iil~~~~~~kg~~~~~-----~iLigIvvG~ila~~lG~~--d~~~v~~a~~~~lP~~~~P~fd--~~~i 227 (428)
T PRK10720 157 TIIISMVTLAVTVLGSVLFRGFLAII-----PILIGVLVGYALSFAMGMV--DTTPIIEAHWFALPTFYTPRFE--WFAI 227 (428)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHh-----HHHHHHHHHHHHHHHhcCC--CHHHhhcCccccCCCCCCCcCc--HHHH
Confidence 77888888877776554445544322 5799999999999998752 23333322 3456666556444 3444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc----ccCCChhhhhHhhhhhhhhccCcccccccchhhHHHhhhCCCchh
Q 005883 354 QLAIKTGIITGILSLTEGIAVGRTFASLHNY----QVDGNKEMIAIGFMNIVGCCFSCYVTTGSFSRSAVNYNAGAKTIF 429 (672)
Q Consensus 354 ~~~~~~ai~~~iv~l~e~ia~~~~~a~~~~~----~id~nqEl~a~Gi~Niv~s~fg~~p~t~s~srSav~~~~G~rT~l 429 (672)
...++.++ +.+.|+++...+.++..++ +.|.|||+.++|++|+++|+||++|++++..+..+-..+|.++|.
T Consensus 228 l~l~~~~l----v~~~EsiG~~~a~~~~~~~~~~~~~~~~r~l~adGlatii~glfG~~p~tty~en~g~ia~T~v~sr~ 303 (428)
T PRK10720 228 LTILPAAL----VVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTW 303 (428)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHhhCCCCCCCccccchHhhhhHHHHHHHhcCCCCccccccccceeeecccchhH
Confidence 44444444 4455666655555443333 457899999999999999999999999866666666668888888
Q ss_pred HHHHHHHHHHHHHHH--hhhhhhhchHHHHHHHHHHHHhccCCHHHHHHHhhcCchhh------hHH-----------Hh
Q 005883 430 SNIVMAATVLVTLLF--LMPLFHYTPDFVLAAIIITAVVGLVDYKAALRLWKLDKLDF------VAC-----------CC 490 (672)
Q Consensus 430 s~iv~a~~~ll~ll~--l~~l~~~iP~~vLaaiii~~~~~li~~~~~~~l~k~~~~d~------~v~-----------~~ 490 (672)
...++++++++..++ ++++++.||.+|++|+.+ +++++++..+++.+|+ ++.|+ .+. ..
T Consensus 304 v~~~a~~~li~lg~~pk~~a~ia~iP~pVlgg~~i-~~fg~i~~~Gi~~l~~-~~~~~~~~~n~~i~~~~l~~g~~~~~~ 381 (428)
T PRK10720 304 VIGGAAIIAILLSCVGKLAAAIQAIPLPVMGGVSL-LLYGVIGASGIRVLIE-SKVDYNKAQNLILTSVILIIGVSGAKV 381 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHH-ccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 877777777766654 899999999999999999 6999999999999965 34342 211 12
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHhhCCC
Q 005883 491 SFFGVLFISVQIGLAIAVGVSVFKIILHVTRPN 523 (672)
Q Consensus 491 t~~~~~~~~v~~Gl~~gv~~sl~~~l~~~~~p~ 523 (672)
++...+..|+..|.++|++++++..++|.-|+.
T Consensus 382 ~~~~~~~~gi~~g~~~ai~Lnlll~~~~~~~~~ 414 (428)
T PRK10720 382 NIGAAELKGMALATIVGIGLSLIFKLISKLRPE 414 (428)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhcccccccCC
Confidence 233334467888999999999888776655554
No 9
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=99.94 E-value=4.6e-25 Score=242.45 Aligned_cols=326 Identities=15% Similarity=0.136 Sum_probs=248.7
Q ss_pred HHHHHHhhHHHHHHHhCCCc-------hhhhhhhhhhhhhhhhccCCc---ccccchh-hHHHHHHHHhhhccccCCCch
Q 005883 120 IASLAIPQGISYAKLANLQP-------IIGLYSSFVPPIVYSVLGSSR---HIGIGPV-SVASLVMGTMLDGEVSHSNKK 188 (672)
Q Consensus 120 v~~~~iPq~~aya~laglpp-------~~GLyss~v~~liy~l~Gss~---~~~~Gp~-a~~sl~~~~~v~~~~~~~~~~ 188 (672)
.+.+.+|.-++-+. +++ +..+..+.++++++++.+..+ ....|+. +.++...... .+.
T Consensus 20 ~~~i~~p~iv~~~~---l~~~~~~~li~at~~~sgi~Tllq~~~~~~~~~lp~~~G~sfa~i~~~~~~~-~~~------- 88 (415)
T TIGR00801 20 GGTVLVPLLVGLAP---LSAEQTQYLVSISLLTSGIGTLLQLFRTGGQIGLPSYLGSSFAFVSPMIAIG-SGL------- 88 (415)
T ss_pred HHHHHHHHHHhccc---CCHHHHHHHHHHHHHHHHHHHHHHHhhhcCceeeeeeecCcHHHHHHHHHHH-hcc-------
Confidence 35666777666554 444 367889999999999887766 6777775 5544333221 111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh--hh--cchhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCCCChHHHHHHH
Q 005883 189 DLYLELAFTSTLFAGLFQASLGIF--RL--GFIIDFLSKATLIGFMAGAAVIVSLQQLKGLLGITHFTSDMELIPVLESV 264 (672)
Q Consensus 189 ~~~~~~a~~~t~l~Gv~~~~lG~l--rl--g~l~~~lp~~vi~Gf~~g~gl~i~~~ql~~~lG~~~~~~~~~~~~~~~~~ 264 (672)
.++.+..+.+.+|+++++++.+ |+ +++.+++|+.+..+++.++|+.+...+++++.|....+...+
T Consensus 89 --~~~~~~g~~i~~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~iv~~IGl~L~~i~l~~~~g~~~~~~~~~-------- 158 (415)
T TIGR00801 89 --GIPAIMGALIATGLVYTLLSLLIKKLGPRWLMKLFPPVVTGPVVMLIGLSLIPVAVKMAAGGEAAMSSAT-------- 158 (415)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchhHHHhHHHHHHHHHHHHHHHhccCCCcccccc--------
Confidence 1577889999999999999985 44 577999999999999999999999999999887653211111
Q ss_pred HhccccchhHHHHHHHHHHHHHHHHHHhhhcCCcccccccchhHHHHHHHHHHHHHhhCCCCCeeEeecCCC-CCCCCCC
Q 005883 265 FNSIKEWKWETIVMGFCFLIFLLVARFISTRKPRLFWVSAAAPLTSVILSSLLIFLLKSKLKHVSIIGHLPK-GVNPTSE 343 (672)
Q Consensus 265 ~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~r~~~~~~i~~~~~Li~vi~~t~is~~~~~~~~~v~~vg~ip~-glp~p~~ 343 (672)
..++.++.+|+++++++++.++..|++-| .++.++++++++++++.++..+. +-+.+.|. ++|.+..
T Consensus 159 -----~~~~~~~~vg~~~l~~~vl~~~~~~g~~~-----~~aiLigiv~g~i~a~~lg~~~~--~~v~~~~~~~lP~~~~ 226 (415)
T TIGR00801 159 -----YGSLENLGVAFVVLALIILLNRFGKGFLK-----SISILIGILVGYILALFMGIVDF--SPVIDAPWFSLPTPFT 226 (415)
T ss_pred -----cCchhhHHHHHHHHHHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHcCCccc--hhhccCcccccCCccC
Confidence 12455678888888877776654444322 23789999999999999875222 11233332 4555444
Q ss_pred CcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccC----CChhhhhHhhhhhhhhccCcccccccchhhHH
Q 005883 344 NKLYFHGPHLQLAIKTGIITGILSLTEGIAVGRTFASLHNYQVD----GNKEMIAIGFMNIVGCCFSCYVTTGSFSRSAV 419 (672)
Q Consensus 344 p~~~~~~~~~~~~~~~ai~~~iv~l~e~ia~~~~~a~~~~~~id----~nqEl~a~Gi~Niv~s~fg~~p~t~s~srSav 419 (672)
|..+|+.. .+...+.++++++.|+++..++++++.|++.| .|||+.++|++|+++|+||++|++++..++++
T Consensus 227 ~g~~f~~~----~~~~~~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l~adGl~~i~aglfG~~p~t~~sen~g~ 302 (415)
T TIGR00801 227 FGPSFEWP----AILTMLPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGVLADGLATLLAGLFGGFPNTTFAQNIGV 302 (415)
T ss_pred CCceecHH----HHHHHHHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchHHHhhHHHHHHHhcCCCCCcchhhhhee
Confidence 43344433 34444667889999999999999998888664 47999999999999999999999999999999
Q ss_pred HhhhCCCchhHHHHHHHHHHHHHHH--hhhhhhhchHHHHHHHHHHHHhccCCHHHHHHHhhcCch
Q 005883 420 NYNAGAKTIFSNIVMAATVLVTLLF--LMPLFHYTPDFVLAAIIITAVVGLVDYKAALRLWKLDKL 483 (672)
Q Consensus 420 ~~~~G~rT~ls~iv~a~~~ll~ll~--l~~l~~~iP~~vLaaiii~~~~~li~~~~~~~l~k~~~~ 483 (672)
+..+|++||.+.+++|+++++..++ +++++.++|.++++++.+ ++++++....++.+++.+..
T Consensus 303 ~~~T~~~sr~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l-~~~~~i~~~gi~~l~~~~~~ 367 (415)
T TIGR00801 303 IALTRVASRWVIVGAAVILIALGFFPKIAALITSIPSPVLGGASI-VMFGMIAASGIRILIRNKLD 367 (415)
T ss_pred eeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHhCccC
Confidence 9999999999999999999999998 999999999999999999 69999999999999886543
No 10
>PF13792 Sulfate_tra_GLY: Sulfate transporter N-terminal domain with GLY motif
Probab=99.92 E-value=1.8e-25 Score=187.94 Aligned_cols=83 Identities=52% Similarity=1.040 Sum_probs=80.4
Q ss_pred ccccccccCCCh-hhhHhhHHHHHHHHHHHHhhHHHHHHHhCCCchhhhhhhhhhhhhhhhccCCcccccchhhHHHHHH
Q 005883 96 FPILRWAPHYSL-SLFRSDLIAGLTIASLAIPQGISYAKLANLQPIIGLYSSFVPPIVYSVLGSSRHIGIGPVSVASLVM 174 (672)
Q Consensus 96 ~pi~~wl~~Y~~-~~l~~D~~aGltv~~~~iPq~~aya~laglpp~~GLyss~v~~liy~l~Gss~~~~~Gp~a~~sl~~ 174 (672)
||+++|+++|++ +++++|++||+|++++++||+||||.+||+||++|||++++++++|++||+||++++||++.+|+++
T Consensus 1 ~P~l~wl~~y~~k~~~~~D~~aGltva~~~iPq~~a~A~lAg~pp~~GLy~a~~~~liyalfG~s~~~~~Gp~a~~s~l~ 80 (84)
T PF13792_consen 1 FPILQWLPRYSWKSNLRGDLLAGLTVALVAIPQGMAYALLAGVPPIYGLYAAIIPPLIYALFGSSRHMIVGPTAAMSLLI 80 (84)
T ss_pred CCchhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeHHHHHHHHHHhhccCCCccccChHHHHHHHH
Confidence 799999999997 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhh
Q 005883 175 GTML 178 (672)
Q Consensus 175 ~~~v 178 (672)
++++
T Consensus 81 ~~~v 84 (84)
T PF13792_consen 81 ASVV 84 (84)
T ss_pred HHhC
Confidence 8753
No 11
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=99.90 E-value=3.4e-21 Score=211.95 Aligned_cols=329 Identities=13% Similarity=0.125 Sum_probs=220.0
Q ss_pred hHhhHHHHHHHHHHHHhhHHHHHHHhCCCchhhhhhhhhhhhhhh-hccCCcccccchhhHHHHHHHHhhhccccCCCch
Q 005883 110 FRSDLIAGLTIASLAIPQGISYAKLANLQPIIGLYSSFVPPIVYS-VLGSSRHIGIGPVSVASLVMGTMLDGEVSHSNKK 188 (672)
Q Consensus 110 l~~D~~aGltv~~~~iPq~~aya~laglpp~~GLyss~v~~liy~-l~Gss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~ 188 (672)
+...++.|+.-.+...--.++...+-|+++...+.++.++++++. .+|+..++..|+.......+-... ... ..++
T Consensus 29 ~~~~~~~GlQh~lam~~~~v~~Plilgl~~~~tl~~sGi~TllQ~~~~G~rlP~v~G~sf~f~~~~~~~~-~~~--~~~~ 105 (429)
T TIGR03616 29 AAQTIVMGLQHAVAMFGATVLMPLLMGFDPNLTILMSGIGTLLFFLITGGRVPSYLGSSAAFVGAVIAAT-GYN--GQGT 105 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHhCCCceeEEcCcHHHHHHHHHHH-hhc--ccCC
Confidence 456777777766543333333344457999999999999999996 689999999998665443222111 111 1112
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhh----cchhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCCCChHHHHHHH
Q 005883 189 DLYLELAFTSTLFAGLFQASLGIFRL----GFIIDFLSKATLIGFMAGAAVIVSLQQLKGLLGITHFTSDMELIPVLESV 264 (672)
Q Consensus 189 ~~~~~~a~~~t~l~Gv~~~~lG~lrl----g~l~~~lp~~vi~Gf~~g~gl~i~~~ql~~~lG~~~~~~~~~~~~~~~~~ 264 (672)
+.+++.++.+++++|++++++|++++ +++.+++|+.|..-.+..+|+.++...++...|- ++
T Consensus 106 ~~~~~~a~ga~iv~G~i~~llg~~~~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~vg~~~~~~~-------~~------- 171 (429)
T TIGR03616 106 NPNIALALGGIIACGLVYAAIGLVVMRTGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSAS-------GF------- 171 (429)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHhcccc-------cc-------
Confidence 23577888999999999999999876 6678888888888889899998888777653221 00
Q ss_pred HhccccchhHHHHHHHHHHHHHHHHHHhhhcCCcccccccchhHHHHHHHHHHHHHh----hCC-CCCeeEe-ecCCCCC
Q 005883 265 FNSIKEWKWETIVMGFCFLIFLLVARFISTRKPRLFWVSAAAPLTSVILSSLLIFLL----KSK-LKHVSII-GHLPKGV 338 (672)
Q Consensus 265 ~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~r~~~~~~i~~~~~Li~vi~~t~is~~~----~~~-~~~v~~v-g~ip~gl 338 (672)
-+|. ++++++.+++...+.|++-|.+ +.|+++++++++++.+ +.. ..+.+.+ +.-+.++
T Consensus 172 ------~~~~----al~tl~~i~l~~l~~~~~l~~~-----avLiGivvG~iva~~l~~~~g~~~~vd~s~v~~a~~~~l 236 (429)
T TIGR03616 172 ------DSWM----AVLTILCIGAVAVFTRGMLQRL-----LILVGLIAAYLAYFILTNVFGLGKAVDFSPISQAAWFGL 236 (429)
T ss_pred ------ccHH----HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhcCCCccccCcccccCccccC
Confidence 1121 2222222222223334332222 7899999999998875 211 1233333 2223356
Q ss_pred CCCCCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccCC--ChhhhhHhhhhhhhhccCcccccccchh
Q 005883 339 NPTSENKLYFHGPHLQLAIKTGIITGILSLTEGIAVGRTFASLHNYQVDG--NKEMIAIGFMNIVGCCFSCYVTTGSFSR 416 (672)
Q Consensus 339 p~p~~p~~~~~~~~~~~~~~~ai~~~iv~l~e~ia~~~~~a~~~~~~id~--nqEl~a~Gi~Niv~s~fg~~p~t~s~sr 416 (672)
|++..|.+++ ..+ ...+..+++.+.|+++..++.++..+++.|+ ||++.++|++|+++|+||+.|.+.+..+
T Consensus 237 P~~~~p~f~~--~~i----l~~~~~~lv~~~esiG~~~a~~~~~~~~~~~~i~r~l~adGl~t~~agl~g~~p~tt~~en 310 (429)
T TIGR03616 237 PNFHTPVFNA--NAM----LLIAPVALILVAENLGHFKAVAGMTGRNLDPYMGRAFVGDGLATMLSGSVGGTGVTTYAEN 310 (429)
T ss_pred CcCCCceEcH--HHH----HHHHHHHHHHHHHhhHHHHHHHHHhCCCCCchhccchhhhhHHHHHHHhcCCCCCcceeee
Confidence 6666665443 333 3334456778888888888888777766666 8999999999999999999998876555
Q ss_pred hHHHhhhCCCchhHHHHHHHHHHHHHHH--hhhhhhhchHHHHHHHHHHHHhccCCHHHHHHH
Q 005883 417 SAVNYNAGAKTIFSNIVMAATVLVTLLF--LMPLFHYTPDFVLAAIIITAVVGLVDYKAALRL 477 (672)
Q Consensus 417 Sav~~~~G~rT~ls~iv~a~~~ll~ll~--l~~l~~~iP~~vLaaiii~~~~~li~~~~~~~l 477 (672)
..+...+|+.+|......++++++..++ ++.++..||.+|++|+.+ ++++++...+++.+
T Consensus 311 ~g~i~~T~v~SR~v~~~a~~~lillgl~Pk~~al~~~IP~pVlgG~~i-~~fg~i~~~Gi~~l 372 (429)
T TIGR03616 311 IGVMAVTKVYSTLVFVAAAVFAILLGFSPKFGALIHTIPVAVLGGASI-VVFGLIAVAGARIW 372 (429)
T ss_pred eeeeeecCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 5555557777777666666654443332 344999999999999998 69999988888733
No 12
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=99.85 E-value=8.2e-19 Score=191.96 Aligned_cols=338 Identities=13% Similarity=0.098 Sum_probs=229.1
Q ss_pred HHHHHHhhHHHHHHHhCCCch-------hhhhhhhhhhhhhhhccCCcccccchhhHH-HHHHHHhhhccccCCCchhHH
Q 005883 120 IASLAIPQGISYAKLANLQPI-------IGLYSSFVPPIVYSVLGSSRHIGIGPVSVA-SLVMGTMLDGEVSHSNKKDLY 191 (672)
Q Consensus 120 v~~~~iPq~~aya~laglpp~-------~GLyss~v~~liy~l~Gss~~~~~Gp~a~~-sl~~~~~v~~~~~~~~~~~~~ 191 (672)
.+.+.+|.-++= ..|+++. ..+..+.+.+++.+++|+..++..||.... ..+......... .+......
T Consensus 23 ~~~i~vPliva~--a~gl~~~~~~~li~~~l~~sGIaTllQ~~~G~rlPiv~G~Sf~~~~~~~~i~~~~~~-~g~~~~~~ 99 (433)
T PRK11412 23 CNTVVVPPTLLS--AFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEAS-RGTPINDI 99 (433)
T ss_pred HHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCchHHHHHHHHHHhcccc-cCccHHHH
Confidence 456667766543 4678774 678899999999999999999999996554 222222111100 00011111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-hcchhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCCCChHHHHHHHHhcccc
Q 005883 192 LELAFTSTLFAGLFQASLGIFR-LGFIIDFLSKATLIGFMAGAAVIVSLQQLKGLLGITHFTSDMELIPVLESVFNSIKE 270 (672)
Q Consensus 192 ~~~a~~~t~l~Gv~~~~lG~lr-lg~l~~~lp~~vi~Gf~~g~gl~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~~~~ 270 (672)
.+......+++|++++++|..+ ++++.+++|+-|..-++.-+|+.++...++++.|.+... ..+ .++
T Consensus 100 ~g~l~g~~i~~g~~~~~lg~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~~a~~~~~G~~~~~-~~~-----------~~~ 167 (433)
T PRK11412 100 ATSLAVGIALSGVVTILIGFSGLGHRLARLFTPMVMVVFMLLLGAQLTTIFFKGMLGLPFGI-ADP-----------NGK 167 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHhHHHHHHhhHHHHHHHhcCCCccC-ccc-----------ccc
Confidence 2222346788999999999998 699999999999999999999999999999998862110 011 012
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhcCCcccccccchhHHHHHHHHHHHH-HhhCCCCCeeEeecCCC-CCCCCCCCcccC
Q 005883 271 WKWETIVMGFCFLIFLLVARFISTRKPRLFWVSAAAPLTSVILSSLLIF-LLKSKLKHVSIIGHLPK-GVNPTSENKLYF 348 (672)
Q Consensus 271 ~~~~~~~ig~~~l~~ll~~~~~~~r~~~~~~i~~~~~Li~vi~~t~is~-~~~~~~~~v~~vg~ip~-glp~p~~p~~~~ 348 (672)
+++..+.+++.++++++....+.|++-|.+ +.|+++++|++++. .++.| .+.+++.|. .+| ...|. .|
T Consensus 168 ~~~~~~~~a~~~l~~il~~~~~~~g~~~~~-----svLiGiv~G~v~a~~~~g~d---~~~v~~a~w~~~p-fG~P~-~F 237 (433)
T PRK11412 168 IQLPPFGLSVAVMCLVLAMIIFLPQRIARY-----SLLVGTIVGWILWAFCFPSS---HSLSGELHWQWFP-LGSGG-AL 237 (433)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhhhHHHHH-----HHHHHHHHHHHHHHHHhCCC---cchhccCCceeec-CCCCC-cc
Confidence 233455677777776666665555554433 78999999999854 55542 222233332 222 33442 24
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccCCChhhhhHhhhhhhhhccCcccccccchhhHHHhhhCCCch
Q 005883 349 HGPHLQLAIKTGIITGILSLTEGIAVGRTFASLHNYQVDGNKEMIAIGFMNIVGCCFSCYVTTGSFSRSAVNYNAGAKTI 428 (672)
Q Consensus 349 ~~~~~~~~~~~ai~~~iv~l~e~ia~~~~~a~~~~~~id~nqEl~a~Gi~Niv~s~fg~~p~t~s~srSav~~~~G~rT~ 428 (672)
++..+..++..+++..+....+..++++..+++...+.+.+|.+.++|++|+++++||++|.+..-.+..+-..+|+++|
T Consensus 238 ~~~~il~~~~~~lv~~~e~iG~~~a~~~~~~~~~~~~~~l~rgi~~dGi~s~laglfg~~p~tt~sqNvGvi~~TgV~SR 317 (433)
T PRK11412 238 EPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYRR 317 (433)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchhhccHHHHHHHhcCCCCCCchhhhhhhhhhcCCchh
Confidence 44444444444433333334444444444333222244678999999999999999999999887777777778999999
Q ss_pred hHHHHHHHHHHHHHHH--hhhhhhhchHHHHHHHHHHHHhccCCHHHHHHHhhcCch
Q 005883 429 FSNIVMAATVLVTLLF--LMPLFHYTPDFVLAAIIITAVVGLVDYKAALRLWKLDKL 483 (672)
Q Consensus 429 ls~iv~a~~~ll~ll~--l~~l~~~iP~~vLaaiii~~~~~li~~~~~~~l~k~~~~ 483 (672)
......|+++++..++ ++.++..||.+|++|+.++ +++++....++.+-|.+..
T Consensus 318 ~v~~~aa~ilillgl~PK~~alia~IP~pVlGg~~~~-~Fg~I~~~Gi~~l~~~~~~ 373 (433)
T PRK11412 318 RSFIYGSVMCLLVALIPALTRLFCSIPLPVSSAVMLV-SYLPLLGSALVFSQQITFT 373 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHHHHHHhCCCC
Confidence 9999999998888876 7789999999999999888 7888877777777666543
No 13
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=99.85 E-value=5.8e-20 Score=198.14 Aligned_cols=311 Identities=12% Similarity=0.095 Sum_probs=228.2
Q ss_pred hhhhhhhhhhhhhhh----ccCCcccccch-hhHHHHHHHHhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005883 141 IGLYSSFVPPIVYSV----LGSSRHIGIGP-VSVASLVMGTMLDGEVSHSNKKDLYLELAFTSTLFAGLFQASLGIFRLG 215 (672)
Q Consensus 141 ~GLyss~v~~liy~l----~Gss~~~~~Gp-~a~~sl~~~~~v~~~~~~~~~~~~~~~~a~~~t~l~Gv~~~~lG~lrlg 215 (672)
+.|.+|.+++++|.+ +|+.-+...|. ++..+.+.. +.++.+ .-.+.++...+.+|++.++++.+ +.
T Consensus 57 ~~l~~~GiaTllq~~~~~~~g~~lP~~lG~sFafi~p~i~-~~~~~g-------~~~~~~~G~ii~ag~~~~li~~~-~~ 127 (451)
T COG2233 57 ADLLASGIGTLLQLLGTGPGGSGLPSYLGSSFAFVAPMIA-IGGTTG-------DGIAALLGGIIAAGLVYFLISPI-VK 127 (451)
T ss_pred HHHHHHHHHHHHHHhhccCcccCCCeeEechHHHHHHHHH-HHhccC-------CchHHHHHHHHHHHHHHHHHHHH-HH
Confidence 569999999999997 44455666665 444444332 222221 11466778899999999999977 44
Q ss_pred -chhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCCCChHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhhh
Q 005883 216 -FIIDFLSKATLIGFMAGAAVIVSLQQLKGLLGITHFTSDMELIPVLESVFNSIKEWKWETIVMGFCFLIFLLVARFIST 294 (672)
Q Consensus 216 -~l~~~lp~~vi~Gf~~g~gl~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~ 294 (672)
|+.+++|+.|.+-++.-+|+.++...++.+.|......+.++ .+..++.+++.++++.++..++.|
T Consensus 128 ~~l~rlfPPvVtG~Vi~~IGlsL~~vai~~~~G~~~~~~~~~~-------------~~~~~l~la~~tl~~il~~~~f~~ 194 (451)
T COG2233 128 IRLARLFPPVVTGPVVLVIGLSLAPVAINMAGGGPGAAGNPDF-------------GSLENLGLALVTLLIILLINRFGK 194 (451)
T ss_pred HHHHHhCCCceEEeEeeeehhhhHHHHHHHhhCCCCCCCCccc-------------CchhHHHHHHHHHHHHHHHHHHhh
Confidence 999999999988899999999999999999987632221111 345567888888888877766655
Q ss_pred cCCcccccccchhHHHHHHHHHHHHHhhCCCCCeeEeecCCC-CCCCCCCCcccCChhhHHHHHHHHHHHHHHHHHHHHH
Q 005883 295 RKPRLFWVSAAAPLTSVILSSLLIFLLKSKLKHVSIIGHLPK-GVNPTSENKLYFHGPHLQLAIKTGIITGILSLTEGIA 373 (672)
Q Consensus 295 r~~~~~~i~~~~~Li~vi~~t~is~~~~~~~~~v~~vg~ip~-glp~p~~p~~~~~~~~~~~~~~~ai~~~iv~l~e~ia 373 (672)
.+-|. .+.|+++++|++++++.+. .+.+-+.+-|. .+|.|..+...|++..+..+++++++..+++..+..+
T Consensus 195 g~~~~-----i~ILiGlv~G~~la~~~G~--vdf~~v~~a~w~~~P~~~~fg~~F~~~ail~m~~v~iV~~~E~~G~i~A 267 (451)
T COG2233 195 GFLRR-----IPILIGLVVGYLLALFMGM--VDFSGVAEAPWFALPTPFYFGMAFDWGAILTMLPVAIVTIVEHTGDITA 267 (451)
T ss_pred hHHHH-----HHHHHHHHHHHHHHHHhCC--cCccccccCceeeCCcccCCCeeecHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 55443 2689999999999999984 22222444433 4666655544666666666666655555555555555
Q ss_pred HHHHhhhcCCcccCCChhhhhHhhhhhhhhccCcccccccchhhHHHhhhCCCchhHHHHHHHHHHHHHHH--hhhhhhh
Q 005883 374 VGRTFASLHNYQVDGNKEMIAIGFMNIVGCCFSCYVTTGSFSRSAVNYNAGAKTIFSNIVMAATVLVTLLF--LMPLFHY 451 (672)
Q Consensus 374 ~~~~~a~~~~~~id~nqEl~a~Gi~Niv~s~fg~~p~t~s~srSav~~~~G~rT~ls~iv~a~~~ll~ll~--l~~l~~~ 451 (672)
+++...++...+.+.+|.++++|++++++++||++|.|+.-.+..+-..+|.+||......|+++++..++ ++.+++.
T Consensus 268 ~~~itg~~~~~~~~l~rg~~aDGlat~iag~fg~~p~TtfaqNiGvv~lT~v~Sr~V~~~aavili~lgl~pk~~al~~s 347 (451)
T COG2233 268 TGEITGRDLDGKPRLRRGLLADGLATLIAGLFGGFPNTTFAQNIGVVALTGVYSRYVIAGAAVILILLGLFPKFGALIQS 347 (451)
T ss_pred HHhHhCCcCccCcccccceeeccHHHHHHHhcCCCCCCchhhceeeeeeccCChhHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 55554444333466789999999999999999999999977777777789999999999999988877765 8889999
Q ss_pred chHHHHHHHHHHHHhccCCHHHHHHHhhcC
Q 005883 452 TPDFVLAAIIITAVVGLVDYKAALRLWKLD 481 (672)
Q Consensus 452 iP~~vLaaiii~~~~~li~~~~~~~l~k~~ 481 (672)
||.+|++|+.++ +++++....++.+-|.+
T Consensus 348 IP~pVlGGa~iv-mFG~Ia~sGir~l~~~~ 376 (451)
T COG2233 348 IPSPVLGGAMLV-LFGMIAASGIRILIRNK 376 (451)
T ss_pred CChhhhhHHHHH-HHHHHHHHHHHHHHhcc
Confidence 999999999887 89999888887776644
No 14
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=99.84 E-value=1.6e-18 Score=189.49 Aligned_cols=343 Identities=15% Similarity=0.108 Sum_probs=205.5
Q ss_pred HhhHHHHHHHHHHHHhhHHHHHHHh----CCC------chhhhhhhhhhhhhhhh-ccCCcccccchhhHHHHHHHHhhh
Q 005883 111 RSDLIAGLTIASLAIPQGISYAKLA----NLQ------PIIGLYSSFVPPIVYSV-LGSSRHIGIGPVSVASLVMGTMLD 179 (672)
Q Consensus 111 ~~D~~aGltv~~~~iPq~~aya~la----glp------p~~GLyss~v~~liy~l-~Gss~~~~~Gp~a~~sl~~~~~v~ 179 (672)
++++++|++-.+...+-.+....+- |++ ....+..+.++++++++ +|...++..||....-. ....+.
T Consensus 1 ~~~i~~glQ~~l~m~~~~iv~P~il~~~~g~~~~~~~li~at~l~sgi~Tllq~~~~g~~lpl~~G~s~~~~~-~~~~~~ 79 (389)
T PF00860_consen 1 GKEILLGLQHFLAMFYIIIVVPLILAAAFGLDADTAALISATFLVSGIATLLQGLPAGHRLPLVPGPSFAFIF-AFMIVI 79 (389)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTTTS-----------HHHHHHHHHHHHHHHHHHTTT-----EEE-GGGHH-HHHGGG
T ss_pred CccHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcCCCceecccccchhhhh-hhhccc
Confidence 3678888888865444333333321 221 24678889999999999 99999999998444221 122222
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCCCChH
Q 005883 180 GEVSHSNKKDLYLELAFTSTLFAGLFQASLGIFRL-GFIIDFLSKATLIGFMAGAAVIVSLQQLKGLLGITHFTSDMELI 258 (672)
Q Consensus 180 ~~~~~~~~~~~~~~~a~~~t~l~Gv~~~~lG~lrl-g~l~~~lp~~vi~Gf~~g~gl~i~~~ql~~~lG~~~~~~~~~~~ 258 (672)
... .+....++.+..+.+++|+++++++++++ +++.+++|+.+..++..++|+.+....++...|...... .
T Consensus 80 g~~---~~~~~~~~~~~g~~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~L~~~~~~~~~~~~~~~~-~--- 152 (389)
T PF00860_consen 80 GMA---ESGGYGLQAALGAVLISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLSLAPIGLKNAGGIWGNPD-G--- 152 (389)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS---BT-T---
T ss_pred ccc---cchhhchhhhhhHHHHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhhhhhhHhhcccccccccc-c---
Confidence 110 12234478889999999999999999998 588999999999999999999999999999888753211 0
Q ss_pred HHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhhhcCCcccccccchhHHHHHHHHHHHHHhhCCCCCeeEeecCCC-C
Q 005883 259 PVLESVFNSIKEWKWETIVMGFCFLIFLLVARFISTRKPRLFWVSAAAPLTSVILSSLLIFLLKSKLKHVSIIGHLPK-G 337 (672)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~r~~~~~~i~~~~~Li~vi~~t~is~~~~~~~~~v~~vg~ip~-g 337 (672)
....++....++...+++.+......+++.+.. +.++++++++++++..+..+..-. +.+-|. +
T Consensus 153 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----ailigi~~g~i~~~~~g~~~~~~~-~~~~~~~~ 217 (389)
T PF00860_consen 153 ---------LLVGDGKNLGLAVLTLLFILLLSLFLKGFLRKG-----AILIGIIAGWIVAAILGVVDFSPS-VSSAPWFS 217 (389)
T ss_dssp ----------B---HHHHHHHHHHHHHHHHHHHSSSTTTTTH-----HHHHHHHHHHHHHHHHHHTTSSH--HHHS-SS-
T ss_pred ---------cccccccccccccccchhhhhhhhhhhhhcccc-----cchhhhhhhhhhhhcccccccCcc-cccccccc
Confidence 001223344555555555555554444444332 789999999999999873211100 222221 1
Q ss_pred CCCC---CCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc----ccCCChhhhhHhhhhhhhhccCcccc
Q 005883 338 VNPT---SENKLYFHGPHLQLAIKTGIITGILSLTEGIAVGRTFASLHNY----QVDGNKEMIAIGFMNIVGCCFSCYVT 410 (672)
Q Consensus 338 lp~p---~~p~~~~~~~~~~~~~~~ai~~~iv~l~e~ia~~~~~a~~~~~----~id~nqEl~a~Gi~Niv~s~fg~~p~ 410 (672)
+|.| ..|. |+. .++...+..+++.+.|+++.-.+.++..+. +.+.+|-+.++|++|+++++||+.|.
T Consensus 218 ~p~~~~~g~p~--f~~----~~i~~~~~~~lv~~~es~G~~~a~~~~~~~~~~~~~~~~r~l~~dg~~~~l~gl~G~~~~ 291 (389)
T PF00860_consen 218 LPSPFPFGWPS--FDP----GAILTFLIFALVAMFESIGTIVAVARIAGKDDPRPPRIRRGLLADGLGTILAGLFGTSPT 291 (389)
T ss_dssp ---------------H----HHHHHHTHHHHHHHHHHHHHHHHHHHHHTS-TCCCCCHHHHHHHHHHHHHHHHHHT---E
T ss_pred ccccccccccc--ccH----HHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCCccchhhcccceeeeeeeeechhhcCCCC
Confidence 2211 1222 222 344444555667777776666655554333 45578999999999999999999998
Q ss_pred cccchhhHHHhhhCCCchhHHHHHHHHHHHHHHH--hhhhhhhchHHHHHHHHHHHHhccCCHHHHHHHhhcCch
Q 005883 411 TGSFSRSAVNYNAGAKTIFSNIVMAATVLVTLLF--LMPLFHYTPDFVLAAIIITAVVGLVDYKAALRLWKLDKL 483 (672)
Q Consensus 411 t~s~srSav~~~~G~rT~ls~iv~a~~~ll~ll~--l~~l~~~iP~~vLaaiii~~~~~li~~~~~~~l~k~~~~ 483 (672)
+.+..+.+.-..+|+++|.++..++++.+++.++ ++|++..+|.++++|..++ .++++-..+++.+...+..
T Consensus 292 t~~~en~g~i~~t~v~Sr~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~lv-~~g~i~~~gi~~i~~~~~~ 365 (389)
T PF00860_consen 292 TTYSENAGGIAATGVASRRVGLTAGVILILFGLSPKFAPLFASIPSPVIGGPLLV-LFGMIMMSGIRNIDWVDLD 365 (389)
T ss_dssp EE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHH-HHHHHHHHHHHHHHHTTS-
T ss_pred ccccccchhhhhhccccceeeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchHH-HHHHHHHHHhHhheecccC
Confidence 8755555666668899999999998887776664 8999999999999887766 4444445555555444443
No 15
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=99.77 E-value=5.9e-19 Score=160.01 Aligned_cols=117 Identities=32% Similarity=0.565 Sum_probs=105.1
Q ss_pred cccccCCCCEEEEEecCceEEechHHHHHHHHHHHhhhhhhhccccCCCccEEEEEccCCCccchhHHHHHHHHHHHHHh
Q 005883 542 YENATRVPSFLILSIESPIFFANSLYLQERISRWVRGEENRIRENNESALKCVILDMTAVTAIDTSGIDAISELKKNMDK 621 (672)
Q Consensus 542 ~~~~~~~~~v~Iirl~g~L~F~Na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~ 621 (672)
|++.+..+++.|++++|+|+|+|++++++++.+++.+.+++.+ .....+.+||||++|++||++|+++|.++.+++++
T Consensus 1 y~~~~~~~~v~ii~~~g~l~f~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~ 78 (117)
T PF01740_consen 1 YIEIETHDGVLIIRLDGPLFFANAEEFRDRIRKLIDEDPERIK--KRQTIKNVILDMSGVSFIDSSGIQALVDIIKELRR 78 (117)
T ss_dssp SCEEEEETTEEEEEEESEESHHHHHHHHHHHHHHHCCSSS--H--TSSSSSEEEEEETTESEESHHHHHHHHHHHHHHHH
T ss_pred CCeeEEECCEEEEEEeeEEEHHHHHHHHHHHHHhhhccccccc--ccccceEEEEEEEeCCcCCHHHHHHHHHHHHHHHH
Confidence 5666778899999999999999999999999998765522111 23458999999999999999999999999999999
Q ss_pred cCCEEEEEeCCHhHHHHHHhCCCccccCCCccccCHHHH
Q 005883 622 RSLQLALVNLVGTVMEKLHQSKTLDSFRSKGLYLTVGEA 660 (672)
Q Consensus 622 ~gi~l~la~~~~~v~~~L~~sg~~~~~~~~~if~tv~eA 660 (672)
+|++++++++++.+++.|+++|+.+.++++++|+|++||
T Consensus 79 ~g~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~~s~~~A 117 (117)
T PF01740_consen 79 RGVQLVLVGLNPDVRRILERSGLIDFIPEDQIFPSVDDA 117 (117)
T ss_dssp TTCEEEEESHHHHHHHHHHHTTGHHHSCGGEEESSHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHcCCChhcCCCCccCCHHHC
Confidence 999999999999999999999999999999999999998
No 16
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=99.68 E-value=1.9e-16 Score=140.98 Aligned_cols=102 Identities=19% Similarity=0.266 Sum_probs=94.3
Q ss_pred CCCCEEEEEecCceEEechHHHHHHHHHHHhhhhhhhccccCCCccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEE
Q 005883 547 RVPSFLILSIESPIFFANSLYLQERISRWVRGEENRIRENNESALKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQL 626 (672)
Q Consensus 547 ~~~~v~Iirl~g~L~F~Na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l 626 (672)
+.+++.+++++|+|+|+|++++++++.+.+.+. +.+.+++||++|+||||||+++|.++.++++++|+++
T Consensus 5 ~~~~~~vi~l~G~L~f~~~~~~~~~l~~~~~~~----------~~~~vilDls~v~~iDssgi~~L~~~~~~~~~~g~~l 74 (106)
T TIGR02886 5 VKGDVLIVRLSGELDHHTAERVRRKIDDAIERR----------PIKHLILNLKNVTFMDSSGLGVILGRYKKIKNEGGEV 74 (106)
T ss_pred EECCEEEEEEecccchhhHHHHHHHHHHHHHhC----------CCCEEEEECCCCcEecchHHHHHHHHHHHHHHcCCEE
Confidence 457899999999999999999999998876532 3789999999999999999999999999999999999
Q ss_pred EEEeCCHhHHHHHHhCCCccccCCCccccCHHHHH
Q 005883 627 ALVNLVGTVMEKLHQSKTLDSFRSKGLYLTVGEAV 661 (672)
Q Consensus 627 ~la~~~~~v~~~L~~sg~~~~~~~~~if~tv~eAv 661 (672)
+++++++++++.|+++|+.+.+ ++|++.+||+
T Consensus 75 ~l~~~~~~v~~~l~~~gl~~~~---~i~~~~~~a~ 106 (106)
T TIGR02886 75 IVCNVSPAVKRLFELSGLFKII---RIYESEEEAL 106 (106)
T ss_pred EEEeCCHHHHHHHHHhCCceEE---EEcCChHHhC
Confidence 9999999999999999999988 5999999884
No 17
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=99.65 E-value=5.3e-16 Score=138.86 Aligned_cols=103 Identities=18% Similarity=0.153 Sum_probs=92.7
Q ss_pred CCCCEEEEEecCceEEechHHHHHHHHHHHhhhhhhhccccCCCccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEE
Q 005883 547 RVPSFLILSIESPIFFANSLYLQERISRWVRGEENRIRENNESALKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQL 626 (672)
Q Consensus 547 ~~~~v~Iirl~g~L~F~Na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l 626 (672)
..+++.+++++|+|+|+|++++++++.+.+.+. ..+.+|+||++|++||+||+++|.++.++++++|+++
T Consensus 7 ~~~~~~v~~l~G~L~~~~a~~~~~~l~~~~~~~----------~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l 76 (109)
T cd07041 7 VWDGVLVLPLIGDLDDERAEQLQERLLEAISRR----------RARGVIIDLTGVPVIDSAVARHLLRLARALRLLGART 76 (109)
T ss_pred EeCCEEEEeeeeeECHHHHHHHHHHHHHHHHHc----------CCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeE
Confidence 346899999999999999999999987765432 3689999999999999999999999999999999999
Q ss_pred EEEeCCHhHHHHHHhCCCccccCCCccccCHHHHH
Q 005883 627 ALVNLVGTVMEKLHQSKTLDSFRSKGLYLTVGEAV 661 (672)
Q Consensus 627 ~la~~~~~v~~~L~~sg~~~~~~~~~if~tv~eAv 661 (672)
+++++++++++.|+++|+.+ +..++|+|++||+
T Consensus 77 ~l~g~~~~v~~~l~~~gl~~--~~~~~~~t~~~Al 109 (109)
T cd07041 77 ILTGIRPEVAQTLVELGIDL--SGIRTAATLQQAL 109 (109)
T ss_pred EEEeCCHHHHHHHHHhCCCh--hhceeeccHHHhC
Confidence 99999999999999999977 3347999999985
No 18
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=99.59 E-value=5.3e-15 Score=130.33 Aligned_cols=92 Identities=17% Similarity=0.248 Sum_probs=84.4
Q ss_pred CCCCEEEEEecCceEEechHHHHHHHHHHHhhhhhhhccccCCCccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEE
Q 005883 547 RVPSFLILSIESPIFFANSLYLQERISRWVRGEENRIRENNESALKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQL 626 (672)
Q Consensus 547 ~~~~v~Iirl~g~L~F~Na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l 626 (672)
+.+++.+++++|+++|+|+++|++++.+.+.+ +..+.+|+||++|+|||+||+++|.+++++++++|+++
T Consensus 5 ~~~~v~ii~~~G~l~f~~~~~~~~~l~~~~~~----------~~~~~vilDls~v~~iDssgl~~L~~l~~~~~~~g~~l 74 (100)
T cd06844 5 KVDDYWVVRLEGELDHHSVEQFKEELLHNITN----------VAGKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQF 74 (100)
T ss_pred EECCEEEEEEEEEecHhhHHHHHHHHHHHHHh----------CCCCEEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEE
Confidence 45789999999999999999999999876542 24789999999999999999999999999999999999
Q ss_pred EEEeCCHhHHHHHHhCCCcccc
Q 005883 627 ALVNLVGTVMEKLHQSKTLDSF 648 (672)
Q Consensus 627 ~la~~~~~v~~~L~~sg~~~~~ 648 (672)
.++|+++++++.|+++|+.+.+
T Consensus 75 ~l~~~~~~v~~~l~~~gl~~~~ 96 (100)
T cd06844 75 VLTGISPAVRITLTESGLDKGX 96 (100)
T ss_pred EEECCCHHHHHHHHHhCchhhh
Confidence 9999999999999999997754
No 19
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=99.58 E-value=8.3e-13 Score=141.68 Aligned_cols=341 Identities=17% Similarity=0.177 Sum_probs=207.0
Q ss_pred hhHHHHHHHHHHHHhhH--HHH--HHHhCCCch---hhhh----hhhhhhhhhhhccCCcccccchhhHHHHHHHHhhhc
Q 005883 112 SDLIAGLTIASLAIPQG--ISY--AKLANLQPI---IGLY----SSFVPPIVYSVLGSSRHIGIGPVSVASLVMGTMLDG 180 (672)
Q Consensus 112 ~D~~aGltv~~~~iPq~--~ay--a~laglpp~---~GLy----ss~v~~liy~l~Gss~~~~~Gp~a~~sl~~~~~v~~ 180 (672)
.-+.||+...++..--. +-+ +.-.|+++. ..+. ++.+.+++.++. .+.++..++...-+.++.....+
T Consensus 22 s~~~aG~va~lvg~~~~~~iv~~a~~~~g~s~aq~~swl~a~~~~~Gl~ti~lS~~-~r~Pi~~awStPGaAll~~~~~~ 100 (395)
T TIGR00843 22 PTLIAGFLAVLIGYAGPAAIFFQAAIKAGASTAMIIGWITAIGIAAAVSGIFLSIR-FKTPVLTAWSAPGAALLVTGFPG 100 (395)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCeeeecCchHHHHHHHhcCC
Confidence 44667777766432111 111 334577764 2222 333444555444 26778888764444444333332
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHHHHhh-hcchhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCCCChHH
Q 005883 181 EVSHSNKKDLYLELAFTSTLFAGLFQASLGIFR-LGFIIDFLSKATLIGFMAGAAVIVSLQQLKGLLGITHFTSDMELIP 259 (672)
Q Consensus 181 ~~~~~~~~~~~~~~a~~~t~l~Gv~~~~lG~lr-lg~l~~~lp~~vi~Gf~~g~gl~i~~~ql~~~lG~~~~~~~~~~~~ 259 (672)
.. +..+..+-+++|++.+++|+.+ ++++++++|+++..|.++|+.+.....-++.+..
T Consensus 101 ~~---------~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLAGIlL~f~l~~~~a~~~------------ 159 (395)
T TIGR00843 101 IS---------LNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLAGILFQFGLGAFAALDG------------ 159 (395)
T ss_pred CC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 21 4566788899999999999999 4999999999999999999988876554432210
Q ss_pred HHHHHHhccccchhHHHHHHHHHHHHHHHHHHhhhcC-CcccccccchhHHHHHHHHHHHHHhhCCCCCeeEeecCCCCC
Q 005883 260 VLESVFNSIKEWKWETIVMGFCFLIFLLVARFISTRK-PRLFWVSAAAPLTSVILSSLLIFLLKSKLKHVSIIGHLPKGV 338 (672)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~r~-~~~~~i~~~~~Li~vi~~t~is~~~~~~~~~v~~vg~ip~gl 338 (672)
.+ .+++..++..++. ||+ |+ ++.++++++++++++..+..+. + .+...+
T Consensus 160 ------------~p---ll~~~mll~~l~~----~r~~Pr------~avl~aLlvG~iva~~~G~~~~--~---~~~~~l 209 (395)
T TIGR00843 160 ------------LF---LICFSMLLCWLAS----KAFAPR------YAMIAALICGIAFSFALGDMNP--T---DLDFKI 209 (395)
T ss_pred ------------hH---HHHHHHHHHHHHH----HHhcch------HHHHHHHHHHHHHHHHhcCCCc--c---cccccc
Confidence 01 1222222222333 232 33 3789999999999998764211 1 111123
Q ss_pred CCCC--CCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccCCChhhhhHhhhhhhhhccCccc------c
Q 005883 339 NPTS--ENKLYFHGPHLQLAIKTGIITGILSLTEGIAVGRTFASLHNYQVDGNKEMIAIGFMNIVGCCFSCYV------T 410 (672)
Q Consensus 339 p~p~--~p~~~~~~~~~~~~~~~ai~~~iv~l~e~ia~~~~~a~~~~~~id~nqEl~a~Gi~Niv~s~fg~~p------~ 410 (672)
+.|. .|++++ ...+..++...++.+.....-+-...+.+||+.+.|+-+.+.|++|++++.||+++ +
T Consensus 210 ~~p~~~~P~fs~-----~a~~~l~lPl~~vtm~~qnlpgiavl~aaGy~~p~~~~~~~tGl~sll~ApfGg~~~nlaait 284 (395)
T TIGR00843 210 ALPQFIAPDFSF-----AHSLNLALPLFLVSLAGQFAPGIAALKAAGYNAPAKPIIAAAGLAALFAAFAGGISIGIAAIT 284 (395)
T ss_pred ccceeeCCCCCH-----HHHHHHHHHHHHHHHHhcCchHHHHHHHcCCCCCchHHHHHHHHHHHHHhccCCchhhhhHHh
Confidence 3333 555543 23455555555665544433333445568999999999999999999999999999 3
Q ss_pred cccchhhHHHhhhCCCchhHHHHHHHHHHHHHHH---hhhhhhhchHHHHHHHHHHHHhccCCHHHHHHHhhcCc-hh--
Q 005883 411 TGSFSRSAVNYNAGAKTIFSNIVMAATVLVTLLF---LMPLFHYTPDFVLAAIIITAVVGLVDYKAALRLWKLDK-LD-- 484 (672)
Q Consensus 411 t~s~srSav~~~~G~rT~ls~iv~a~~~ll~ll~---l~~l~~~iP~~vLaaiii~~~~~li~~~~~~~l~k~~~-~d-- 484 (672)
++-+.....+.+ ++|+-.+++..|++.++..++ +..++..+|....+++-=.+.++-+.- .+..-.+.++ .|
T Consensus 285 aAic~G~~ah~d-~~rR~~a~i~~Gv~yll~glfag~i~~l~~~~P~~li~~laGlAll~~~~~-~l~~a~~~~~~r~~a 362 (395)
T TIGR00843 285 AAICMGKDAHED-KDKRWIAAAAAGIFYLLAGLFAGAITALFAALPKELIAALAGLALLGAIAG-NIKIALHEDQERDAA 362 (395)
T ss_pred HHHhcCcccccC-cCccchHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH-HHHHHhcCcchhHHH
Confidence 322222233333 778889999999998888877 566899999998888766666665422 2222222222 12
Q ss_pred hhHHHhhhhhhhhhhh---hhhHHHHHHHH
Q 005883 485 FVACCCSFFGVLFISV---QIGLAIAVGVS 511 (672)
Q Consensus 485 ~~v~~~t~~~~~~~~v---~~Gl~~gv~~s 511 (672)
.+.+++|.-+.-+.|+ .+|+++|+...
T Consensus 363 ~~tflvtaSg~~~~gigaafWgl~~G~~~~ 392 (395)
T TIGR00843 363 LIAFLATASGLHFLGIGSAFWGLCAGGLAY 392 (395)
T ss_pred HHHHHHHHhcCCcccccHHHHHHHHHHHHH
Confidence 2334444444445544 46888886554
No 20
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=99.56 E-value=3.3e-12 Score=148.57 Aligned_cols=349 Identities=15% Similarity=0.113 Sum_probs=240.1
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHhC------CCchhhhhhhhhhhhhhhhccCCcccccchhhHHHHHHHHhhhccccCC
Q 005883 112 SDLIAGLTIASLAIPQGISYAKLAN------LQPIIGLYSSFVPPIVYSVLGSSRHIGIGPVSVASLVMGTMLDGEVSHS 185 (672)
Q Consensus 112 ~D~~aGltv~~~~iPq~~aya~lag------lpp~~GLyss~v~~liy~l~Gss~~~~~Gp~a~~sl~~~~~v~~~~~~~ 185 (672)
+-+-|=+-+...++.-+|||+.+.+ +...=-|.|+.+++++|++||+.|-.++|+++.++++...+..--.
T Consensus 370 q~laa~ifiyFA~L~PaIaFG~ll~~~T~g~~gv~E~Llstai~Giifslf~GQPL~IlG~TGPilvF~~~ly~~c~--- 446 (900)
T TIGR00834 370 QCLAAVIFIYFAALSPAITFGGLLGEKTRNMMGVSELLISTAVQGVLFALLAAQPLLVVGFSGPLLVFEEAFFSFCE--- 446 (900)
T ss_pred hhHHHHHHHHHHHhhHHhhHHHHHHHhhCCcchHHHHHHHHHHHHHHHhhhcCCceEEecCcccHHHHHHHHHHHHh---
Confidence 3444555566777777888887642 4445569999999999999999999999988887776554433211
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCC-CCh------H
Q 005883 186 NKKDLYLELAFTSTLFAGLFQASLGIFRLGFIIDFLSKATLIGFMAGAAVIVSLQQLKGLLGITHFTSD-MEL------I 258 (672)
Q Consensus 186 ~~~~~~~~~a~~~t~l~Gv~~~~lG~lrlg~l~~~lp~~vi~Gf~~g~gl~i~~~ql~~~lG~~~~~~~-~~~------~ 258 (672)
.+...|+.....+.+.++++.++++.+...++++|+.+..-..|..-+++..+...++.+..+...... .+. .
T Consensus 447 ~~~~~yl~~~~WigiW~~~~~~lla~~~~s~lvryiTRFTeEiFa~lIs~IFI~eai~~L~~~f~~~~~~~~~~~~~~~~ 526 (900)
T TIGR00834 447 SNGLEYLVGRVWIGLWLVLLVLLLVATEGSFLVRYISRFTQEIFSFLISLIFIYETFSKLIKIFQEHPLQVFYNTLFCVP 526 (900)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccc
Confidence 112357888888999999999999999999999999999999999999999999999888654211000 000 0
Q ss_pred -----HHH-----HHH-----------HhccccchhHHHHHHHHHHHHHHHHHHhhhc--CCcc--cccccchhHHHHHH
Q 005883 259 -----PVL-----ESV-----------FNSIKEWKWETIVMGFCFLIFLLVARFISTR--KPRL--FWVSAAAPLTSVIL 313 (672)
Q Consensus 259 -----~~~-----~~~-----------~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~r--~~~~--~~i~~~~~Li~vi~ 313 (672)
... ... +......-..++++.+.++.+.+.++.+++. +++. ..+.-.+..++|++
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~llsliL~lgTf~~a~~L~~fk~s~yf~~~vR~~isDfgv~iaI~~ 606 (900)
T TIGR00834 527 PKPQGPSVSALLEKDCSKLGGTLGGNNCRFQPNTALLSLVLMLGTFFLAMFLRKFKNSRYFPGKARRLIGDFGVPISILI 606 (900)
T ss_pred cccccccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCcCCchhhhhhhhhhHHHHHHH
Confidence 000 000 0001122344556666665555555544221 1221 12556788899999
Q ss_pred HHHHHHHhhC-CCCCeeEeecCCCCCCCCCCCc--------cc----CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005883 314 SSLLIFLLKS-KLKHVSIIGHLPKGVNPTSENK--------LY----FHGPHLQLAIKTGIITGILSLTEGIAVGRTFAS 380 (672)
Q Consensus 314 ~t~is~~~~~-~~~~v~~vg~ip~glp~p~~p~--------~~----~~~~~~~~~~~~ai~~~iv~l~e~ia~~~~~a~ 380 (672)
.+.+.|.++. +... -.+|.++. |.-|. +. +.......++..|+.++++-|+|+-.++....+
T Consensus 607 ~t~v~~~~~~v~~~k----l~Vp~~f~-pt~p~~R~W~i~p~~~~~~~p~w~~~~A~iPAlll~ILiFmD~nIts~iv~~ 681 (900)
T TIGR00834 607 MVLVDIFIGDTYTQK----LSVPSGLK-VTNPSARGWFIPPLGENRPFPWWMMFAAALPALLVFILIFMEQQITTLIVSK 681 (900)
T ss_pred HHHHHHHhccCcccc----cCCCCCcC-CCCCCCCCeEEccccccccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcC
Confidence 9999997651 1111 13566665 22221 11 122334667788899999999999777666554
Q ss_pred cCCc---ccCCChhhhhHhhhhhhhhccCcccccccchhhHHHhhh----------C-------C-CchhHHHHHHHHHH
Q 005883 381 LHNY---QVDGNKEMIAIGFMNIVGCCFSCYVTTGSFSRSAVNYNA----------G-------A-KTIFSNIVMAATVL 439 (672)
Q Consensus 381 ~~~~---~id~nqEl~a~Gi~Niv~s~fg~~p~t~s~srSav~~~~----------G-------~-rT~ls~iv~a~~~l 439 (672)
+.+. ..-.+-.|+-+|+.|.++|++|--+.+|+..+|....++ | + .+|+++++.++++.
T Consensus 682 ~e~kLkKgsgyH~Dllllg~~~~v~sllGLPw~~aatv~S~~Hv~sL~v~~~~~~~Ge~~~i~~V~EQRvT~ll~~lLig 761 (900)
T TIGR00834 682 KERKLKKGSGFHLDLLLVVGMGGVAALFGLPWLSAATVRSVTHANALTVMSKASAPGEKAQIQEVREQRVTGLLVAVLVG 761 (900)
T ss_pred ccccCCCCcccchHHHHHHHHHHHHHhcCCCcccccCCcChhhHhHHeeeeeccCCCCCCccceeEeeehHHHHHHHHHH
Confidence 3221 223467899999999999999999999998888777652 1 2 47899999998776
Q ss_pred HHHHHhhhhhhhchHHHHHHHHHHHHhccC
Q 005883 440 VTLLFLMPLFHYTPDFVLAAIIITAVVGLV 469 (672)
Q Consensus 440 l~ll~l~~l~~~iP~~vLaaiii~~~~~li 469 (672)
+.+ +++|++.+||++||.|+.++.++.-+
T Consensus 762 lsv-~~~PvL~~IP~aVL~GvFlYMGv~SL 790 (900)
T TIGR00834 762 LSI-LMEPILKRIPLAVLFGIFLYMGVTSL 790 (900)
T ss_pred HHH-HHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 655 68999999999999999999988755
No 21
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=99.47 E-value=3.3e-11 Score=136.85 Aligned_cols=321 Identities=14% Similarity=0.134 Sum_probs=221.0
Q ss_pred hhhhhhhhhhhhhhhhccCCcccccchhhHHHHHHHHhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Q 005883 140 IIGLYSSFVPPIVYSVLGSSRHIGIGPVSVASLVMGTMLDGEVSHSNKKDLYLELAFTSTLFAGLFQASLGIFRLGFIID 219 (672)
Q Consensus 140 ~~GLyss~v~~liy~l~Gss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~a~~~t~l~Gv~~~~lG~lrlg~l~~ 219 (672)
.=.|.|..+++++|++||+-+-.++|+++-+.++-..+.. .. .+++..|+...+.+.+.+.++.+++..+....+++
T Consensus 395 ~E~L~stal~GiifslfggQPLlIlg~TgP~lVfe~~lf~-f~--~~~~~dyl~~r~wVglW~~~l~illaa~~as~lv~ 471 (876)
T KOG1172|consen 395 VETLLSTALCGIIFSLFGGQPLLILGVTGPLLVFEKALFK-FC--KDNGLDYLAFRAWVGLWTAFLLILLAATNASSLVK 471 (876)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHH-HH--hhCCCchhhHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3458999999999999999999999988887765443322 11 12235688888899999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCCC-C--h---HH-HHHHHHhcc----------ccchhHHHHHHHHH
Q 005883 220 FLSKATLIGFMAGAAVIVSLQQLKGLLGITHFTSDM-E--L---IP-VLESVFNSI----------KEWKWETIVMGFCF 282 (672)
Q Consensus 220 ~lp~~vi~Gf~~g~gl~i~~~ql~~~lG~~~~~~~~-~--~---~~-~~~~~~~~~----------~~~~~~~~~ig~~~ 282 (672)
|+.+..-..|..-|++..+...++.+.++....... + . .. ...+ ..+. .+.-..++++.+.+
T Consensus 472 ~~TRfteEiF~~LIs~iFi~eai~kl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~llslil~~gt 550 (876)
T KOG1172|consen 472 YITRFTEEIFGLLISLIFIYEAIKKLIKIFKGLPIEFDSKPNPGADWSGPE-CESVSGTLLGSSCRPDTALLSLILMFGT 550 (876)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCCccccccccc-ccccCcccCCCcCCcchHHHHHHHHHHH
Confidence 999999999999999999999999877664211000 0 0 00 0000 0000 11112233444444
Q ss_pred HHHHHHHHHhhh--cCCcc--cccccchhHHHHHHHHHHHHHhh-CCCCCeeEeecCCCCCCCCCCC--------cccCC
Q 005883 283 LIFLLVARFIST--RKPRL--FWVSAAAPLTSVILSSLLIFLLK-SKLKHVSIIGHLPKGVNPTSEN--------KLYFH 349 (672)
Q Consensus 283 l~~ll~~~~~~~--r~~~~--~~i~~~~~Li~vi~~t~is~~~~-~~~~~v~~vg~ip~glp~p~~p--------~~~~~ 349 (672)
+.+-+..|.+++ .++++ .++.-.+..++|++.+++.|+.+ ....++ .+|.++|++..+ .-...
T Consensus 551 ~~~a~~lr~fr~s~yf~~~~R~~isDfgvpisIl~~s~i~~~~~~~~~~kl----~vp~~~~~t~~~~rgw~v~~~~~~P 626 (876)
T KOG1172|consen 551 LFLALTLRKFKSSRYFPRKVRSLISDFGVPLSILVFSLIDYFGGSVETPKL----PVPSVFPPTWPFDRGWFVPPFGKNP 626 (876)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHhhhhHHHHHHHHHHHhhccccCCCcc----ccCcCCCCCCcccCCeeeCCCCCCC
Confidence 333333433211 11221 13556677888999999998875 232322 234444433221 11233
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc---ccCCChhhhhHhhhhhhhhccCcccccccchhhHHHhhh---
Q 005883 350 GPHLQLAIKTGIITGILSLTEGIAVGRTFASLHNY---QVDGNKEMIAIGFMNIVGCCFSCYVTTGSFSRSAVNYNA--- 423 (672)
Q Consensus 350 ~~~~~~~~~~ai~~~iv~l~e~ia~~~~~a~~~~~---~id~nqEl~a~Gi~Niv~s~fg~~p~t~s~srSav~~~~--- 423 (672)
+.++..++..++.++++-|+|+-.++....++... ....+-+|+-.|+.|+++|+||--+..|+..+|....++
T Consensus 627 ~~~~~~A~ipalll~iLiFmDqqIts~iv~rke~kLKKgsgyH~DLlllgil~~icsllGLPw~~~a~p~S~~H~~SL~v 706 (876)
T KOG1172|consen 627 WWYVFAALIPALLLTILIFMDQQITAVIVNRKENKLKKGSGYHLDLLLLGILTLICSLLGLPWSNAATVQSPMHTKSLAV 706 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHhhcccccCCCCcchhHHHHHHHHHHHHHHhcCCCccccccccCHHHHHHHHH
Confidence 45677788889999999999997776665544322 233456899999999999999999999999999877763
Q ss_pred --------------CC-CchhHHHHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHhccC
Q 005883 424 --------------GA-KTIFSNIVMAATVLVTLLFLMPLFHYTPDFVLAAIIITAVVGLV 469 (672)
Q Consensus 424 --------------G~-rT~ls~iv~a~~~ll~ll~l~~l~~~iP~~vLaaiii~~~~~li 469 (672)
|+ ..|++|++.++++.+. .++.|++..||++||.|+-.+.++.-+
T Consensus 707 ~~~~~apge~~~i~~V~EQRvtgll~~llvgls-~~~~pvL~~IP~~VL~GvFlYMgv~SL 766 (876)
T KOG1172|consen 707 ESETSAPGEQPQIVGVREQRVTGLLQFLLVGLS-VLLLPVLKLIPMPVLYGVFLYMGVSSL 766 (876)
T ss_pred hhcccCCCCccccccchhhhhHHHHHHHHHHHH-HHHHHHHhhccHHHHHHHHHHHhhccC
Confidence 22 3579999999988844 479999999999999999999888755
No 22
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=99.43 E-value=4.8e-13 Score=119.26 Aligned_cols=100 Identities=20% Similarity=0.274 Sum_probs=90.9
Q ss_pred CCCCEEEEEecCceEEechHHHHHHHHHHHhhhhhhhccccCCCccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEE
Q 005883 547 RVPSFLILSIESPIFFANSLYLQERISRWVRGEENRIRENNESALKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQL 626 (672)
Q Consensus 547 ~~~~v~Iirl~g~L~F~Na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l 626 (672)
..+++.+++++|+++|.|++.+++.+.+...+ +..+.+++||+++++|||+|+++|.++.++++++|+++
T Consensus 9 ~~~~~~vi~~~G~l~~~~~~~~~~~l~~~~~~----------~~~~~vvidls~v~~iDssgl~~L~~~~~~~~~~~~~~ 78 (108)
T TIGR00377 9 VQEGVVIVRLSGELDAHTAPLLREKVTPAAER----------TGPRPIVLDLEDLEFMDSSGLGVLLGRYKQVRRVGGQL 78 (108)
T ss_pred EECCEEEEEEecccccccHHHHHHHHHHHHHh----------cCCCeEEEECCCCeEEccccHHHHHHHHHHHHhcCCEE
Confidence 45689999999999999999999999887653 14789999999999999999999999999999999999
Q ss_pred EEEeCCHhHHHHHHhCCCccccCCCccccCHHH
Q 005883 627 ALVNLVGTVMEKLHQSKTLDSFRSKGLYLTVGE 659 (672)
Q Consensus 627 ~la~~~~~v~~~L~~sg~~~~~~~~~if~tv~e 659 (672)
.+++.++++.+.|+.+|+.+.+ .+|+|++|
T Consensus 79 ~l~~~~~~~~~~l~~~~l~~~~---~i~~~~~~ 108 (108)
T TIGR00377 79 VLVSVSPRVARLLDITGLLRII---PIYPTVEE 108 (108)
T ss_pred EEEeCCHHHHHHHHHhChhhee---ccCCCCCC
Confidence 9999999999999999999988 48888654
No 23
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=99.42 E-value=1.8e-12 Score=114.84 Aligned_cols=101 Identities=36% Similarity=0.608 Sum_probs=88.9
Q ss_pred cCCCCEEEEEecCceEEechHHHHHHHHHHHhhhhhhhccccCCCccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCE
Q 005883 546 TRVPSFLILSIESPIFFANSLYLQERISRWVRGEENRIRENNESALKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQ 625 (672)
Q Consensus 546 ~~~~~v~Iirl~g~L~F~Na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~ 625 (672)
...+++.+++++|+++|.|++.+++++.+..+.. +..+.+|+||++++++|++|+++|.++.++++++|++
T Consensus 5 ~~~~~~~v~~l~G~l~~~~~~~l~~~~~~~~~~~---------~~~~~lilD~~~v~~iDss~~~~L~~~~~~~~~~~~~ 75 (107)
T cd07042 5 EEPPGVLIYRIDGPLFFGNAEYFKDRLLRLVDED---------PPLKVVILDLSAVNFIDSTAAEALEELVKDLRKRGVE 75 (107)
T ss_pred ccCCCEEEEEecCceEeehHHHHHHHHHHHhccC---------CCceEEEEECCCCchhhHHHHHHHHHHHHHHHHCCCE
Confidence 4556899999999999999999999998765432 1257899999999999999999999999999999999
Q ss_pred EEEEeCCHhHHHHHHhCCCccccCCCcccc
Q 005883 626 LALVNLVGTVMEKLHQSKTLDSFRSKGLYL 655 (672)
Q Consensus 626 l~la~~~~~v~~~L~~sg~~~~~~~~~if~ 655 (672)
+.++++++.+++.++..|+.+.++.+..+.
T Consensus 76 ~~l~~~~~~~~~~l~~~g~~~~~~~~~~~~ 105 (107)
T cd07042 76 LYLAGLNPQVRELLERAGLLDEIGEENFFP 105 (107)
T ss_pred EEEecCCHHHHHHHHHcCcHHHhCccccee
Confidence 999999999999999999998887655443
No 24
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=99.38 E-value=5e-10 Score=118.28 Aligned_cols=274 Identities=17% Similarity=0.208 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh-cchhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCCCChHHHHHHHHhcccc
Q 005883 192 LELAFTSTLFAGLFQASLGIFRL-GFIIDFLSKATLIGFMAGAAVIVSLQQLKGLLGITHFTSDMELIPVLESVFNSIKE 270 (672)
Q Consensus 192 ~~~a~~~t~l~Gv~~~~lG~lrl-g~l~~~lp~~vi~Gf~~g~gl~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~~~~ 270 (672)
+..+..+-+++|++.++.|+.++ +++++.+|.++..++++|+-+-..+.-++.+-.
T Consensus 87 ~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLAGvLl~f~l~~f~a~~~----------------------- 143 (378)
T PF03594_consen 87 FAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLAGVLLPFGLAAFTALQA----------------------- 143 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------
Confidence 45566777889999999999995 999999999999999999998877665443210
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhcCCcccccccchhHHHHHHHHHHHHHhhCCCCCeeEeecCCCCCCCC--CCCcccC
Q 005883 271 WKWETIVMGFCFLIFLLVARFISTRKPRLFWVSAAAPLTSVILSSLLIFLLKSKLKHVSIIGHLPKGVNPT--SENKLYF 348 (672)
Q Consensus 271 ~~~~~~~ig~~~l~~ll~~~~~~~r~~~~~~i~~~~~Li~vi~~t~is~~~~~~~~~v~~vg~ip~glp~p--~~p~~~~ 348 (672)
...+ ....++..++.|++.+|+ +.+.+++.+.++++..+.-. . ..++..++.| ..|.|++
T Consensus 144 ---~P~l-~~~ml~~~l~~~r~~pr~---------av~~al~~g~~~a~~~g~~~--~---~~~~~~~~~p~~~~P~Fs~ 205 (378)
T PF03594_consen 144 ---DPLL-VGPMLAVFLLARRFSPRY---------AVLAALVAGVAVAALTGQLH--P---SALQLSLAHPVFTTPEFSW 205 (378)
T ss_pred ---HHHH-HHHHHHHHHHHHHHcchh---------HHHHHHHHHHHHHHhcCCCC--c---cccccccceeEEECCcccH
Confidence 1122 223333334445444444 45667777887777665311 1 1122233334 3455554
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccCCChhhhhHhhhhhhhhccCcccccccchhhHHHhhh--CC-
Q 005883 349 HGPHLQLAIKTGIITGILSLTEGIAVGRTFASLHNYQVDGNKEMIAIGFMNIVGCCFSCYVTTGSFSRSAVNYNA--GA- 425 (672)
Q Consensus 349 ~~~~~~~~~~~ai~~~iv~l~e~ia~~~~~a~~~~~~id~nqEl~a~Gi~Niv~s~fg~~p~t~s~srSav~~~~--G~- 425 (672)
...+.+++.+.++.+.....-+-.+-+.+||+.+.|+-+..-|++|++.+.|||++.+-+--..++...- +.
T Consensus 206 -----~a~v~lalPL~ivtmasQnlpG~aVL~a~GY~~p~~~~~~~tGl~s~l~ApfGg~~~nlAaitaAIc~g~eah~d 280 (378)
T PF03594_consen 206 -----SALVSLALPLFIVTMASQNLPGIAVLRAAGYQPPVNPLITVTGLASLLAAPFGGHAVNLAAITAAICAGPEAHPD 280 (378)
T ss_pred -----HHHHHHHHHHHHHHHHhcchHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHcCCccCCC
Confidence 4567777888888887776666667778999999999999999999999999999988766666666653 32
Q ss_pred --CchhHHHHHHHHHHHHHHH---hhhhhhhchHHHHHHHHHHHHhccCCHHHHHHHhhcCc-hh--hhHHHhhhhhhhh
Q 005883 426 --KTIFSNIVMAATVLVTLLF---LMPLFHYTPDFVLAAIIITAVVGLVDYKAALRLWKLDK-LD--FVACCCSFFGVLF 497 (672)
Q Consensus 426 --rT~ls~iv~a~~~ll~ll~---l~~l~~~iP~~vLaaiii~~~~~li~~~~~~~l~k~~~-~d--~~v~~~t~~~~~~ 497 (672)
|--.++++.|++.+++.++ +..++..+|....+.+-=.+.++-+. ..+..-++.++ .| .+.+++|.-+.-+
T Consensus 281 p~rRy~Aav~~Gv~yll~Gl~a~~~v~l~~~lP~~li~~lAGLALlg~l~-~sl~~A~~~~~~r~aAlvtFlvtaSGisl 359 (378)
T PF03594_consen 281 PSRRYIAAVAAGVFYLLFGLFAAALVALFAALPPALIAALAGLALLGTLG-GSLQTAFSDEKYREAALVTFLVTASGISL 359 (378)
T ss_pred cccchHHHHHHhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHhcCcchhHHHHHHHHHHHcCCCc
Confidence 3336899999988888877 56688999999887766555555442 23344444332 12 2334444444445
Q ss_pred hhh---hhhHHHHHHHHH
Q 005883 498 ISV---QIGLAIAVGVSV 512 (672)
Q Consensus 498 ~~v---~~Gl~~gv~~sl 512 (672)
.|+ .+|+++|++..+
T Consensus 360 ~gIgaafWgLv~G~~~~~ 377 (378)
T PF03594_consen 360 LGIGAAFWGLVAGLLVHL 377 (378)
T ss_pred ccccHHHHHHHHHHHHHh
Confidence 544 478888887654
No 25
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=99.27 E-value=3e-11 Score=105.44 Aligned_cols=90 Identities=22% Similarity=0.266 Sum_probs=82.4
Q ss_pred CCCEEEEEecCceEEechHHHHHHHHHHHhhhhhhhccccCCCccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEEE
Q 005883 548 VPSFLILSIESPIFFANSLYLQERISRWVRGEENRIRENNESALKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQLA 627 (672)
Q Consensus 548 ~~~v~Iirl~g~L~F~Na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~ 627 (672)
.+++.+++++|+++|.|++.+++.+.+..++ +.+.+++||+.+.++|++|+++|.++.++++++|+++.
T Consensus 6 ~~~~~ii~l~G~l~~~~~~~~~~~~~~~~~~-----------~~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~v~ 74 (99)
T cd07043 6 RGGVLVVRLSGELDAATAPELREALEELLAE-----------GPRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRLV 74 (99)
T ss_pred ECCEEEEEEeceecccchHHHHHHHHHHHHc-----------CCCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCeEE
Confidence 3578999999999999999999998775543 25899999999999999999999999999999999999
Q ss_pred EEeCCHhHHHHHHhCCCcccc
Q 005883 628 LVNLVGTVMEKLHQSKTLDSF 648 (672)
Q Consensus 628 la~~~~~v~~~L~~sg~~~~~ 648 (672)
++++++++++.|++.|+.+.+
T Consensus 75 i~~~~~~~~~~l~~~gl~~~~ 95 (99)
T cd07043 75 LVNVSPAVRRVLELTGLDRLF 95 (99)
T ss_pred EEcCCHHHHHHHHHhCcceee
Confidence 999999999999999998766
No 26
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=99.21 E-value=9.6e-11 Score=106.27 Aligned_cols=99 Identities=22% Similarity=0.285 Sum_probs=87.5
Q ss_pred EEEEEecCceEEechHHHHHHHHHHHhhhhhhhccccCCCccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEEEEEe
Q 005883 551 FLILSIESPIFFANSLYLQERISRWVRGEENRIRENNESALKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQLALVN 630 (672)
Q Consensus 551 v~Iirl~g~L~F~Na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~ 630 (672)
..++++.|.|+..|+..+++.+.+++... ..+.+++|++.|+||||+|++.|....+.++++|+++.+++
T Consensus 14 ~~vl~l~G~lD~~~a~~~~e~~~~~~~~~----------~~~~ivIDls~v~~~dS~gl~~L~~~~~~~~~~g~~~~l~~ 83 (117)
T COG1366 14 ILVLPLIGELDAARAPALKETLLEVIAAS----------GARGLVIDLSGVDFMDSAGLGVLVALLKSARLRGVELVLVG 83 (117)
T ss_pred EEEEEeeEEEchHHHHHHHHHHHHHHhcC----------CCcEEEEECCCCceechHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 37999999999999999999999877654 35679999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHhCCCccccCCCccccCHHHHHH
Q 005883 631 LVGTVMEKLHQSKTLDSFRSKGLYLTVGEAVD 662 (672)
Q Consensus 631 ~~~~v~~~L~~sg~~~~~~~~~if~tv~eAv~ 662 (672)
+++++.+.++.+|+.+.+ .++++.+++..
T Consensus 84 i~p~v~~~~~~~gl~~~~---~~~~~~~~~~~ 112 (117)
T COG1366 84 IQPEVARTLELTGLDKSF---IITPTELEAAL 112 (117)
T ss_pred CCHHHHHHHHHhCchhhc---ccccchHHHHH
Confidence 999999999999998776 35666555544
No 27
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=99.04 E-value=4.8e-11 Score=132.34 Aligned_cols=348 Identities=14% Similarity=0.190 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhHHHHHHHhC------CCchhhhhhhhhhhhhhhhccCCcccccchhhHHHHHHHHhhhccccCCCchh
Q 005883 116 AGLTIASLAIPQGISYAKLAN------LQPIIGLYSSFVPPIVYSVLGSSRHIGIGPVSVASLVMGTMLDGEVSHSNKKD 189 (672)
Q Consensus 116 aGltv~~~~iPq~~aya~lag------lpp~~GLyss~v~~liy~l~Gss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~ 189 (672)
|=+-+...++.-+++|+.+.+ +...-.|.++.+++++|++||+.|-.++|+++.+.+......+ .. .....
T Consensus 38 ~~~flyfa~l~PaItFG~ll~~~T~~~~gv~e~l~~~~i~Gi~f~lf~gQPL~Ilg~TgP~~vf~~~l~~-~~--~~~~~ 114 (510)
T PF00955_consen 38 ATLFLYFACLSPAITFGGLLGEATDGAIGVMEVLLSTAICGIIFSLFSGQPLTILGSTGPVLVFEKILYK-FC--KSYGL 114 (510)
T ss_dssp HHHHHHHHHHHHHHSSS-SS---------HHHHHHHHHHHHHHHHHCC--------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc--ccccc
Confidence 444555667777777776543 3344568899999999999999999999998887765443322 11 11123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCC-CCCh-----------
Q 005883 190 LYLELAFTSTLFAGLFQASLGIFRLGFIIDFLSKATLIGFMAGAAVIVSLQQLKGLLGITHFTS-DMEL----------- 257 (672)
Q Consensus 190 ~~~~~a~~~t~l~Gv~~~~lG~lrlg~l~~~lp~~vi~Gf~~g~gl~i~~~ql~~~lG~~~~~~-~~~~----------- 257 (672)
+|++.-..+.+.++++.+++..+...++++|+.+..-..|.+-+++..+...++.+..+..... ..+.
T Consensus 115 ~fl~~~~wig~w~~~~~~~~~~~~~s~lv~~~TRfTeEiF~~lIs~iFi~ea~~~l~~~~~~~p~~~~~~~~~~c~c~~~ 194 (510)
T PF00955_consen 115 DFLPFRAWIGIWTAIFLLVLAAFNASFLVRYITRFTEEIFALLISIIFIYEAIKKLVKIFKKYPLNSDYVTQYSCQCTPP 194 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5777778888999999999999999999999999999999999999999999988876532100 0000
Q ss_pred ----H------H-------HHHHH----Hhcc------------ccchh----HHHHHHHHHHHHHHHHHHhhh--cCCc
Q 005883 258 ----I------P-------VLESV----FNSI------------KEWKW----ETIVMGFCFLIFLLVARFIST--RKPR 298 (672)
Q Consensus 258 ----~------~-------~~~~~----~~~~------------~~~~~----~~~~ig~~~l~~ll~~~~~~~--r~~~ 298 (672)
- . .+... ..+. .+..+ .++++.+.++.+-..++.+++ .+++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~g~~~g~~c~~~~~~~p~taLlSliL~lgTf~la~~L~~fk~S~yf~~ 274 (510)
T PF00955_consen 195 ENSNNSTLNPWTNLNNGSINWSNLSNSECENINGELVGTSCDDHVQYQPDTALLSLILALGTFWLAYTLRQFKNSPYFPR 274 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCcCccH
Confidence 0 0 00000 0000 01111 233333333333333332221 1111
Q ss_pred c--cccccchhHHHHHHHHHHHHHhhCCCCCeeEeecCCCCCCCCCC-------Ccc-cCChhhHHHHHHHHHHHHHHHH
Q 005883 299 L--FWVSAAAPLTSVILSSLLIFLLKSKLKHVSIIGHLPKGVNPTSE-------NKL-YFHGPHLQLAIKTGIITGILSL 368 (672)
Q Consensus 299 ~--~~i~~~~~Li~vi~~t~is~~~~~~~~~v~~vg~ip~glp~p~~-------p~~-~~~~~~~~~~~~~ai~~~iv~l 368 (672)
. -.+...+..++|++.+.+.+..+.+.... ++|.++.+..- +.+ +...-....++..|+.++++-+
T Consensus 275 ~vR~~isDf~v~iaI~~~~~~~~~~~~~~~kL----~vp~~f~pt~~~~r~W~v~p~~~~p~w~~~aA~~palll~iL~F 350 (510)
T PF00955_consen 275 WVREIISDFGVPIAILIMTLVDYLFGVDTPKL----NVPSSFKPTSPGKRGWFVNPFGSLPWWAIFAAIIPALLLTILFF 350 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhHHhhHHHHHHHHHHHHHHHhccccccc----CCCCCCCCCCCCCCCeecCcccCCCHHHHHHHHHHHHHHHHHHH
Confidence 1 13566677888888888887765322221 34544432111 111 1111123345556778888888
Q ss_pred HHHHHHHHHhhhcCC---cccCCChhhhhHhhhhhhhhccCcccccccchhhHHHhhhCC------------------Cc
Q 005883 369 TEGIAVGRTFASLHN---YQVDGNKEMIAIGFMNIVGCCFSCYVTTGSFSRSAVNYNAGA------------------KT 427 (672)
Q Consensus 369 ~e~ia~~~~~a~~~~---~~id~nqEl~a~Gi~Niv~s~fg~~p~t~s~srSav~~~~G~------------------rT 427 (672)
+|+-..+....++++ +..-.+-+|+-.|+.|.++|++|--+.+++..+|..+.++=. .+
T Consensus 351 ~DqnIts~ivn~~e~kLkKg~gyH~DL~llgi~~~v~sllGLPw~~aa~~~S~~Hv~sL~~~~~~~~pGe~~~i~~V~Eq 430 (510)
T PF00955_consen 351 MDQNITSLIVNRPENKLKKGSGYHLDLFLLGIITLVCSLLGLPWMNAATPQSPMHVRSLAVESETSAPGEKPKIVGVREQ 430 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhHhHHHhCChhhccCCCCcccHHHHHHHHHHHHHHHcCCCCcccCccCCHHHhCcccEEeccccCCCCCeeCeEEEe
Confidence 887665554443221 112335678999999999999999888988888877665321 57
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHhccCCH
Q 005883 428 IFSNIVMAATVLVTLLFLMPLFHYTPDFVLAAIIITAVVGLVDY 471 (672)
Q Consensus 428 ~ls~iv~a~~~ll~ll~l~~l~~~iP~~vLaaiii~~~~~li~~ 471 (672)
|+++++.++++.+.+ ++.|++.+||++||.|+.++.++.-++-
T Consensus 431 RvT~l~~~~Ligls~-~l~pvL~~IP~~VL~GvFlymG~~sL~g 473 (510)
T PF00955_consen 431 RVTGLLVHLLIGLSL-FLLPVLKLIPMPVLYGVFLYMGVTSLSG 473 (510)
T ss_dssp --------------------------------------------
T ss_pred cccHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHhheeeeecC
Confidence 899999998776655 6789999999999999999988776543
No 28
>PF13466 STAS_2: STAS domain
Probab=99.00 E-value=1.4e-09 Score=91.45 Aligned_cols=80 Identities=19% Similarity=0.247 Sum_probs=74.0
Q ss_pred EEecCceEEechHHHHHHHHHHHhhhhhhhccccCCCccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEEEEEeCCH
Q 005883 554 LSIESPIFFANSLYLQERISRWVRGEENRIRENNESALKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQLALVNLVG 633 (672)
Q Consensus 554 irl~g~L~F~Na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~~ 633 (672)
+++.|++++.+++.+++.+.++.+. . +.+++|+++|++||++|++.|.+..+.++++|.++.+.++++
T Consensus 1 l~l~G~l~~~~~~~l~~~l~~~~~~-----------~-~~v~lDls~v~~iDsagl~lL~~~~~~~~~~g~~~~l~~~~~ 68 (80)
T PF13466_consen 1 LRLSGELDIATAPELRQALQALLAS-----------G-RPVVLDLSGVEFIDSAGLQLLLAAARRARARGRQLRLTGPSP 68 (80)
T ss_pred CEEEEEEeHHHHHHHHHHHHHHHcC-----------C-CeEEEECCCCCeecHHHHHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 4789999999999999999987732 2 789999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCc
Q 005883 634 TVMEKLHQSKTL 645 (672)
Q Consensus 634 ~v~~~L~~sg~~ 645 (672)
.+++.++..|+.
T Consensus 69 ~~~~ll~~~gld 80 (80)
T PF13466_consen 69 ALRRLLELLGLD 80 (80)
T ss_pred HHHHHHHHhCcC
Confidence 999999999873
No 29
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=98.99 E-value=2.4e-08 Score=107.31 Aligned_cols=306 Identities=14% Similarity=0.157 Sum_probs=180.7
Q ss_pred hhhhhhhhhhhhhhhccCCcccccchhhHHHHHHHHhhh--ccccCC---C-chh---HHHHHHHHHHHHHHHHHHHHHH
Q 005883 141 IGLYSSFVPPIVYSVLGSSRHIGIGPVSVASLVMGTMLD--GEVSHS---N-KKD---LYLELAFTSTLFAGLFQASLGI 211 (672)
Q Consensus 141 ~GLyss~v~~liy~l~Gss~~~~~Gp~a~~sl~~~~~v~--~~~~~~---~-~~~---~~~~~a~~~t~l~Gv~~~~lG~ 211 (672)
.-++++.+..++...||++.++..||.-+.-.-+-+++. +...+. + +.+ ..++..-.+.++++++|.++|+
T Consensus 54 T~~f~sGI~TllQt~fG~RLp~v~G~Sfafl~p~~~i~~~~~~~~~~~~~~~~~~~~~~~mr~iqGAlivas~vqiilG~ 133 (510)
T KOG1292|consen 54 TIFFVSGITTLLQTTFGTRLPLVQGPSFAFLPPALAIISLPRFTCITTPHETDTERFQHRMREIQGALIVASLVQIILGF 133 (510)
T ss_pred HHhhhccHHHHHHHHhhcccccccccceehhhHHHHHHhccccCCCCCcccchhHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 457888899999999999999999995544333333333 222111 1 111 1245556788899999999999
Q ss_pred hhh-cchhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCCCChHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH
Q 005883 212 FRL-GFIIDFLSKATLIGFMAGAAVIVSLQQLKGLLGITHFTSDMELIPVLESVFNSIKEWKWETIVMGFCFLIFLLVAR 290 (672)
Q Consensus 212 lrl-g~l~~~lp~~vi~Gf~~g~gl~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~l~~ll~~~ 290 (672)
.++ |.+.+|+++-.+.=.++-+|+.+.-...+.+ | -+| -+|+..++++++..
T Consensus 134 sGl~g~l~rfi~Plti~P~v~lvgl~l~~~~~~~~-~-----------------------~~w---eI~l~~~llli~fs 186 (510)
T KOG1292|consen 134 SGLWGNLLRFIGPLTIVPLVALVGLGLFQDGFPKL-G-----------------------KHW---EISLPEILLLILFS 186 (510)
T ss_pred hhhHHHHHhhcCChhhhhHHHHHhhhhHHhhhhhh-h-----------------------hhe---eecHHHHHHHHHHH
Confidence 997 9999999999998888887776643332211 0 111 12333332222222
Q ss_pred -H--hhhcCC---cccccccchhHHHHHHHHHHHHHhh---CCCC-----C----ee---EeecCCC-CCCCC---CCCc
Q 005883 291 -F--ISTRKP---RLFWVSAAAPLTSVILSSLLIFLLK---SKLK-----H----VS---IIGHLPK-GVNPT---SENK 345 (672)
Q Consensus 291 -~--~~~r~~---~~~~i~~~~~Li~vi~~t~is~~~~---~~~~-----~----v~---~vg~ip~-glp~p---~~p~ 345 (672)
+ +.++.. +...+.-.+.++++.+..++++++- ...+ + .| +...-|. ..|.| ..|.
T Consensus 187 qy~~~~~~~~~~~~~~if~~f~vll~i~ivW~~~~iLT~tgay~~~~~~t~~~~RTD~~~vi~~apWi~vPyP~QwG~P~ 266 (510)
T KOG1292|consen 187 QYASLPKKGFGSRRIQIFSRFPVLLAIAIVWLYCFILTITGAYPYKPTTTQSSCRTDRNGVISSAPWIRVPYPFQWGPPT 266 (510)
T ss_pred HhhhcccccccccccchHhhccHHHHHHHHHHHHHHHHhccccCCCccccCCcccccHhhhhccCCceeecCCCccCCCc
Confidence 2 211111 1111122245666666666666642 1111 0 01 1111111 12322 2232
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccCCChhhhhHhhhhhhhhccCcccccccchhhHHHhh-hC
Q 005883 346 LYFHGPHLQLAIKTGIITGILSLTEGIAVGRTFASLHNYQVDGNKEMIAIGFMNIVGCCFSCYVTTGSFSRSAVNYN-AG 424 (672)
Q Consensus 346 ~~~~~~~~~~~~~~ai~~~iv~l~e~ia~~~~~a~~~~~~id~nqEl~a~Gi~Niv~s~fg~~p~t~s~srSav~~~-~G 424 (672)
|+......++..+++..+.+..+-.+.+|....+..-....||....+|++.+++|+||.-.++..+++...-.. +.
T Consensus 267 --f~~~~~f~m~aa~~va~iES~G~y~a~ar~~~a~ppP~~~inRgi~~eGig~lL~gl~G~gtG~Tt~~ENigll~vTK 344 (510)
T KOG1292|consen 267 --FSAGLVFAMMAASLVAMIESTGDYIACARLSSATPPPPSVLNRGIGWEGIGSLLAGLFGTGTGSTTSVENIGLLGVTK 344 (510)
T ss_pred --ccHHHHHHHHHHHHHHHHHhcchHHHHHHHhcCCCCChhhhhhhhhhhhHHHHHHHhhCCCccceeeccceeeEeeee
Confidence 333444444444444444444444556665554555556679999999999999999998776666665544333 56
Q ss_pred CCchhHHHHHHHHHHHHHHH--hhhhhhhchHHHHHHHHHHHHhccCCHHHHHH
Q 005883 425 AKTIFSNIVMAATVLVTLLF--LMPLFHYTPDFVLAAIIITAVVGLVDYKAALR 476 (672)
Q Consensus 425 ~rT~ls~iv~a~~~ll~ll~--l~~l~~~iP~~vLaaiii~~~~~li~~~~~~~ 476 (672)
.-||.+--++|.+++++..+ ++.+|+.||.++.||+.-+ +++|+.--.+..
T Consensus 345 VgSRrvvQ~aa~fmI~~~i~gKFgA~fAsIP~piv~~l~c~-~~~mv~avgLSn 397 (510)
T KOG1292|consen 345 VGSRRVVQIAAGFMIFFGIFGKFGAFFASIPDPIVGGLLCI-LFGMVGAVGLSN 397 (510)
T ss_pred eeeeeehhhhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH-HHHHHHHHhhhh
Confidence 66777777777777776665 8999999999999997665 666654333333
No 30
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.82 E-value=1e-06 Score=91.43 Aligned_cols=273 Identities=16% Similarity=0.198 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-hcchhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCCCChHHHHHHHHhcccc
Q 005883 192 LELAFTSTLFAGLFQASLGIFR-LGFIIDFLSKATLIGFMAGAAVIVSLQQLKGLLGITHFTSDMELIPVLESVFNSIKE 270 (672)
Q Consensus 192 ~~~a~~~t~l~Gv~~~~lG~lr-lg~l~~~lp~~vi~Gf~~g~gl~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~~~~ 270 (672)
...+..+-+.+|...++.|++| ++++++-+|+++..++.+|+=+-+.+..++.+-+
T Consensus 102 ~~eaVGAfiVt~~li~l~G~~~~l~rl~~~IP~sla~AmlAGILL~F~l~a~~a~~~----------------------- 158 (402)
T COG3135 102 FAEAVGAFIVTGALIILCGLTGPLTRLMRIIPPSLAAAMLAGILLRFGLKAFKALPT----------------------- 158 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhccCC-----------------------
Confidence 3445667778999999999999 6999999999999999999988887776653211
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhcCCcccccccchhHHHHHHHHHHHHHhhCCCCCeeEeecCCCC--CCCCCCCcccC
Q 005883 271 WKWETIVMGFCFLIFLLVARFISTRKPRLFWVSAAAPLTSVILSSLLIFLLKSKLKHVSIIGHLPKG--VNPTSENKLYF 348 (672)
Q Consensus 271 ~~~~~~~ig~~~l~~ll~~~~~~~r~~~~~~i~~~~~Li~vi~~t~is~~~~~~~~~v~~vg~ip~g--lp~p~~p~~~~ 348 (672)
+ . .+.+..++..++.|.+.+|+ +...+.+++..++...+.-.. +..+.- .|....|+|++
T Consensus 159 -~--p-~l~lpmv~~~ll~r~f~pr~---------aV~aalvvgv~va~~~G~~~~-----~~~~~~~~~p~~v~P~Fs~ 220 (402)
T COG3135 159 -Q--P-LLVLPMVLAYLLARVFAPRY---------AVIAALVVGVLVAALLGDLHT-----ALVALEISTPTWVTPEFSF 220 (402)
T ss_pred -C--h-HHHHHHHHHHHHHHHcCchH---------HHHHHHHHHHHHHHHhCcccc-----cccccccCcceeeCCcccH
Confidence 1 1 11222223333446555554 566777888888877653111 111111 12223354443
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccCCChhhhhHhhhhhhhhccCcccccccchhhHHHhhh-----
Q 005883 349 HGPHLQLAIKTGIITGILSLTEGIAVGRTFASLHNYQVDGNKEMIAIGFMNIVGCCFSCYVTTGSFSRSAVNYNA----- 423 (672)
Q Consensus 349 ~~~~~~~~~~~ai~~~iv~l~e~ia~~~~~a~~~~~~id~nqEl~a~Gi~Niv~s~fg~~p~t~s~srSav~~~~----- 423 (672)
...+.+++.+.++.+...-.-+-.+-+.+||+.+++.-+.+-|+..+.++.||++.++-.--.-++...-
T Consensus 221 -----~A~l~lalPL~lvtmasQN~pGiAvLka~gY~pp~~pl~~~TGl~sll~ApfG~~t~nLaAItAAic~gpdaHpD 295 (402)
T COG3135 221 -----AAMLSLALPLFLVTMASQNLPGIAVLKAAGYQPPPSPLIVATGLASLLSAPFGGHTVNLAAITAAICTGPDAHPD 295 (402)
T ss_pred -----HHHHHHhHHHHHHHHHhccCccceeehhcCCCCCCchHHHHhHHHHHHhcccccceecHHHHHHHHhcCCCCCCC
Confidence 4566777777888776654444444567899999999999999999999999999877533333333221
Q ss_pred CCCchhHHHHHHHHHHHHHHH---hhhhhhhchHHHHHHHHHHHHhccCCHHHHHHHhhcC-chhh--hHHHhhhhhhhh
Q 005883 424 GAKTIFSNIVMAATVLVTLLF---LMPLFHYTPDFVLAAIIITAVVGLVDYKAALRLWKLD-KLDF--VACCCSFFGVLF 497 (672)
Q Consensus 424 G~rT~ls~iv~a~~~ll~ll~---l~~l~~~iP~~vLaaiii~~~~~li~~~~~~~l~k~~-~~d~--~v~~~t~~~~~~ 497 (672)
-.|--.+++++|+.-+++.+| +..++..+|+.....+-=.+..+-+. +.+..-.|.+ ..|. +.+++|.-+.-+
T Consensus 296 ~~rry~Aa~~agi~ylv~GlF~~~~~~l~~alP~~li~~lAGLALlg~~~-~~l~~A~~~~~~R~aAlvtF~VTaSG~tl 374 (402)
T COG3135 296 PARRYTAALVAGIFYLLAGLFGGALVGLMAALPASLIAALAGLALLGTLG-NSLQAALKDEREREAALVTFLVTASGLTL 374 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHhcCcccchhhhhheeehhcccee
Confidence 124457999999998888888 45578899998776654444443321 2233333322 2222 223344444445
Q ss_pred hhh---hhhHHHHHHHH
Q 005883 498 ISV---QIGLAIAVGVS 511 (672)
Q Consensus 498 ~~v---~~Gl~~gv~~s 511 (672)
+|+ .+|++.|.+.-
T Consensus 375 ~GIgaafWGLvaG~~~~ 391 (402)
T COG3135 375 FGIGAAFWGLVAGLLVL 391 (402)
T ss_pred ecccHHHHHHHHHHHHH
Confidence 554 36777776553
No 31
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=97.79 E-value=0.012 Score=61.90 Aligned_cols=253 Identities=15% Similarity=0.185 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHHHHhhh-cchhhccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCCCChHHHHHHHHhccccchhH
Q 005883 196 FTSTLFAGLFQASLGIFRL-GFIIDFLSKATLIGFMAGAAVIVSLQQLKGLLGITHFTSDMELIPVLESVFNSIKEWKWE 274 (672)
Q Consensus 196 ~~~t~l~Gv~~~~lG~lrl-g~l~~~lp~~vi~Gf~~g~gl~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (672)
.+..++.|++-++++.+|. .++++.-++-|-+|.+-=.|+.=..+|++.+..... ..+ ..+.
T Consensus 145 Lalgilvg~fGlil~~~kggS~L~~LTs~gv~ggLllylG~~G~~~qi~kl~~wa~----------------~~~-~~~i 207 (492)
T PF11840_consen 145 LALGILVGVFGLILSIFKGGSKLVNLTSHGVCGGLLLYLGFVGLIGQIKKLFAWAN----------------GFD-MGYI 207 (492)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHhhhcCccccceeeeehhhhHHHHHHHHHHHHh----------------ccC-ccHH
Confidence 4567889999999999997 455888899998887766677767788887653321 111 1122
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCcccccccchhHHHHHHHHHHHHHhhCCCCCeeEeecCCCCCCCCCCCcccCCh----
Q 005883 275 TIVMGFCFLIFLLVARFISTRKPRLFWVSAAAPLTSVILSSLLIFLLKSKLKHVSIIGHLPKGVNPTSENKLYFHG---- 350 (672)
Q Consensus 275 ~~~ig~~~l~~ll~~~~~~~r~~~~~~i~~~~~Li~vi~~t~is~~~~~~~~~v~~vg~ip~glp~p~~p~~~~~~---- 350 (672)
.+++-++++++...+.+++|||. -+| ++-+++.++++..+.. ++. .-+.|+|+.+ ...|.+
T Consensus 208 ~fvvi~~tiv~Ya~L~k~~KrWL---aIP-----l~~~~a~~~a~~lGa~---f~f--~t~pglp~ln--P~YWWge~tG 272 (492)
T PF11840_consen 208 AFVVIIVTIVLYAYLAKIEKRWL---AIP-----LCSILAGVLAFALGAP---FEF--TTEPGLPNLN--PMYWWGEETG 272 (492)
T ss_pred HHHHHHHHHHHHHHHHHhccchh---hhh-----HHHHHHHHHHHHcCCC---cee--ecCCCCCCCC--CcccccCCcc
Confidence 22322233333333333334332 223 3334455556666642 221 1122333211 112211
Q ss_pred --------hhHHHHHHHHHHHHHHHHHHHHHHHHHhhh------cCCcccCCChhhhhHhhhhhhhhccCcccccccchh
Q 005883 351 --------PHLQLAIKTGIITGILSLTEGIAVGRTFAS------LHNYQVDGNKEMIAIGFMNIVGCCFSCYVTTGSFSR 416 (672)
Q Consensus 351 --------~~~~~~~~~ai~~~iv~l~e~ia~~~~~a~------~~~~~id~nqEl~a~Gi~Niv~s~fg~~p~t~s~sr 416 (672)
+.+...++.++.....=--|.++ -+.|.+ .++...|.|+.+....+=|++||.+||--.+.|-..
T Consensus 273 w~LglP~~~hfiav~PFAiLAVaMWSpDflg-hrvFqelnypk~~~kvlMnvDDTm~~~siRQ~vGs~lGGgN~~SsWgT 351 (492)
T PF11840_consen 273 WQLGLPTLEHFIAVLPFAILAVAMWSPDFLG-HRVFQELNYPKETKKVLMNVDDTMTMCSIRQIVGSILGGGNIASSWGT 351 (492)
T ss_pred cccCCCcHHHHHHhccHHHHHHHHhCchHHH-HHHHHHhcCchhhcceeecccchhHHHHHHHHHhhcccCCcccccchh
Confidence 22333333332111111112222 133432 123457888999999999999999999876655444
Q ss_pred hHHHhhhCCCc--hhHHHHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHhccCCHHHHHHHhhcCch
Q 005883 417 SAVNYNAGAKT--IFSNIVMAATVLVTLLFLMPLFHYTPDFVLAAIIITAVVGLVDYKAALRLWKLDKL 483 (672)
Q Consensus 417 Sav~~~~G~rT--~ls~iv~a~~~ll~ll~l~~l~~~iP~~vLaaiii~~~~~li~~~~~~~l~k~~~~ 483 (672)
-.+-.. =+|- +-..+.++++++++.+..-|.=-.+=.+++...+++-++-=.-... -+.||.+|.
T Consensus 352 ymIPaa-IaKRPIpggAiLtg~~Ci~~av~GyPMdlavw~Pvl~vALlvGVflPLleAG-mqm~r~~k~ 418 (492)
T PF11840_consen 352 YMIPAA-IAKRPIPGGAILTGLLCIVAAVWGYPMDLAVWPPVLRVALLVGVFLPLLEAG-MQMTRKGKT 418 (492)
T ss_pred hhhhHH-HhcCCCCchHHHHHHHHHHHHHhcCcchhhhcccHHHHHHHHHHHHHHHHHH-HHHHhcCCc
Confidence 333333 2344 4577889998888887766632222234555555553332111122 356776664
No 32
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=97.46 E-value=0.00051 Score=58.83 Aligned_cols=84 Identities=15% Similarity=0.156 Sum_probs=65.6
Q ss_pred EEEecCceEEechHHHHHHHHHHHhhhhhhhccccCCCccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEEEEEeCC
Q 005883 553 ILSIESPIFFANSLYLQERISRWVRGEENRIRENNESALKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQLALVNLV 632 (672)
Q Consensus 553 Iirl~g~L~F~Na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~ 632 (672)
.+.+.|+|+=-....+-.+..++ .+....+-+|++.|.-+||+|+..|.++.+.++++|..+.+.+++
T Consensus 13 tL~LsGeL~r~tl~~lw~~r~~~------------~~~~~~~~idLs~v~rvDSaglALL~~~~~~~k~~g~~~~L~~~p 80 (99)
T COG3113 13 TLVLSGELDRDTLLPLWSQREAQ------------LKQLDTVRIDLSGVSRVDSAGLALLLHLIRLAKKQGNAVTLTGVP 80 (99)
T ss_pred eEEEeccccHHHHHHHHHHHHHH------------ccccCeEEEehhhcceechHHHHHHHHHHHHHHHcCCeeEEecCc
Confidence 36788888644333222222221 123478999999999999999999999999999999999999999
Q ss_pred HhHHHHHHhCCCcccc
Q 005883 633 GTVMEKLHQSKTLDSF 648 (672)
Q Consensus 633 ~~v~~~L~~sg~~~~~ 648 (672)
++++...+..|+.+.+
T Consensus 81 ~~L~tLa~Ly~l~~~l 96 (99)
T COG3113 81 EQLRTLAELYNLSDWL 96 (99)
T ss_pred HHHHHHHHHhCcHhhh
Confidence 9999999999886654
No 33
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=91.55 E-value=0.12 Score=45.55 Aligned_cols=106 Identities=8% Similarity=-0.017 Sum_probs=63.3
Q ss_pred CEEEEEecCceEEechHHHHHHHHHHHhhhhhhhccccCCCccEEEEEcc-CCCccchhHHHHHHHHHHHHHhcCCEEEE
Q 005883 550 SFLILSIESPIFFANSLYLQERISRWVRGEENRIRENNESALKCVILDMT-AVTAIDTSGIDAISELKKNMDKRSLQLAL 628 (672)
Q Consensus 550 ~v~Iirl~g~L~F~Na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s-~V~~IDsSgi~~L~~l~~~l~~~gi~l~l 628 (672)
++..++++|.++-...+.+.+.+.+.+++. +.-.+.+|++ .+..++..+.....++.....++=.++.+
T Consensus 1 ~il~v~~~g~~t~ed~~~~~~~~~~~~~~~----------~~~~ll~d~~~~~~~~~~~a~~~~~~~~~~~~~~~~r~Av 70 (109)
T PF11964_consen 1 NILAVRVSGKLTEEDYKELLPALEELIADH----------GKIRLLVDLRRDFEGWSPEARWEDAKFGLKHLKHFRRIAV 70 (109)
T ss_dssp S-EEEEEEEEE-HHHHHHHHHHHHHHHTTS----------SSEEEEEEEC-CEEEEHHHHHHHHHHHHCCCCGGEEEEEE
T ss_pred CEEEEEEeeeeCHHHHHHHHHHHHHHHhcC----------CceEEEEEecCccCCCCHHHHHHHHHhchhhhcccCEEEE
Confidence 467889999998777777777777765432 3578999999 88888776544443322221112236777
Q ss_pred EeCCHhHHHHHHhCCCccccCCCccc--cCHHHHHHHHHh
Q 005883 629 VNLVGTVMEKLHQSKTLDSFRSKGLY--LTVGEAVDDLSS 666 (672)
Q Consensus 629 a~~~~~v~~~L~~sg~~~~~~~~~if--~tv~eAv~~~~~ 666 (672)
++.++-.+...+..+.. .-.+-++| .+.+||.+|+++
T Consensus 71 V~~~~~~~~~~~~~~~~-~~~~~~~F~~~~~~~A~~WL~e 109 (109)
T PF11964_consen 71 VGDSEWIRMIANFFAAF-PPIEVRYFPPDEEEEALAWLRE 109 (109)
T ss_dssp E-SSCCCHHHHHHHHHH--SSEEEEE--SSHHHHHHHHC-
T ss_pred EECcHHHHHHHHHHHhc-CCCceEEECCCCHHHHHHHHcC
Confidence 77665333332222221 11233789 999999999863
No 34
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=90.57 E-value=8.9 Score=44.40 Aligned_cols=110 Identities=12% Similarity=0.134 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccCCChhhhhHhhhhhhhhccCcccccccchhhHHHh-------hhCC
Q 005883 353 LQLAIKTGIITGILSLTEGIAVGRTFASLHNYQVDGNKEMIAIGFMNIVGCCFSCYVTTGSFSRSAVNY-------NAGA 425 (672)
Q Consensus 353 ~~~~~~~ai~~~iv~l~e~ia~~~~~a~~~~~~id~nqEl~a~Gi~Niv~s~fg~~p~t~s~srSav~~-------~~G~ 425 (672)
+..-+..++..+++.+-++++.+.. + ..++..-|.+-.+..++.++||+.+...+-.-++... +.|.
T Consensus 14 l~~Di~aGltv~~~~iP~~~ayA~l-a-----glpp~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~~v~~~~~ 87 (563)
T TIGR00815 14 FKGDLMAGLTVGILLIPQAMAYAIL-A-----GLSPIYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGSVIARVGL 87 (563)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH-c-----CCCchhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHHHHHHhcC
Confidence 3344455677788888888877653 2 3566667999999999999999988554333322211 1222
Q ss_pred C-ch---------hHHHHHHHHHHHHHHH-hhhhhhhchHHHHHHHHHHHHhcc
Q 005883 426 K-TI---------FSNIVMAATVLVTLLF-LMPLFHYTPDFVLAAIIITAVVGL 468 (672)
Q Consensus 426 r-T~---------ls~iv~a~~~ll~ll~-l~~l~~~iP~~vLaaiii~~~~~l 468 (672)
. .. ...+++|++.++..++ ++-+..++|.+++.|.+--+++.+
T Consensus 88 ~~~~~~~~~~~a~~l~~l~Gi~~~~~g~lrlG~l~~~is~~Vi~Gf~~g~a~~i 141 (563)
T TIGR00815 88 QYLFDCDAIRLAFTLTLLAGIFQVILGLLRLGFLIEFLSHAVISGFMTGAAITI 141 (563)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHH
Confidence 2 21 5677777777766666 889999999999988665544443
No 35
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=90.45 E-value=0.56 Score=41.14 Aligned_cols=72 Identities=13% Similarity=0.107 Sum_probs=58.5
Q ss_pred EEEEccCCCccchhHHHHHHHHHHHHHhcCCEEEEEeCC-----HhHHHHHHhCCCccccCCCccccCHHHHHHHHHhh
Q 005883 594 VILDMTAVTAIDTSGIDAISELKKNMDKRSLQLALVNLV-----GTVMEKLHQSKTLDSFRSKGLYLTVGEAVDDLSSS 667 (672)
Q Consensus 594 vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~-----~~v~~~L~~sg~~~~~~~~~if~tv~eAv~~~~~~ 667 (672)
+++|+.+|-+-+...+.-=.+..+.++++|.++++...+ .+..++|+..|+. +.+++++.+-..+.++.+++
T Consensus 1 ~l~D~dGvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~--~~~~~i~ts~~~~~~~l~~~ 77 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIP--VDEDEIITSGMAAAEYLKEH 77 (101)
T ss_dssp EEEESTTTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT----GGGEEEHHHHHHHHHHHH
T ss_pred CEEeCccEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcC--CCcCEEEChHHHHHHHHHhc
Confidence 589999999999988888899999999999999886433 4688999999985 55678999988888888764
No 36
>PRK10720 uracil transporter; Provisional
Probab=90.30 E-value=1.4 Score=49.16 Aligned_cols=61 Identities=10% Similarity=0.035 Sum_probs=47.2
Q ss_pred hhhhHhhhhhhhhccCcccccccchhhHHHhhhCCCchhHHHHHHHHHHHHHHHhhhhhhhchHH
Q 005883 391 EMIAIGFMNIVGCCFSCYVTTGSFSRSAVNYNAGAKTIFSNIVMAATVLVTLLFLMPLFHYTPDF 455 (672)
Q Consensus 391 El~a~Gi~Niv~s~fg~~p~t~s~srSav~~~~G~rT~ls~iv~a~~~ll~ll~l~~l~~~iP~~ 455 (672)
++...=.++=++++++++-++...+-.+-|...+++|+.++-+...+-...+++ +..+|+.
T Consensus 261 ~~~r~l~adGlatii~glfG~~p~tty~en~g~ia~T~v~sr~v~~~a~~~li~----lg~~pk~ 321 (428)
T PRK10720 261 GLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIIAIL----LSCVGKL 321 (428)
T ss_pred cccchHhhhhHHHHHHHhcCCCCccccccccceeeecccchhHHHHHHHHHHHH----HHHHHHH
Confidence 456667888999999999998889999999999999999999887655444432 3345553
No 37
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=88.70 E-value=2.9 Score=34.40 Aligned_cols=66 Identities=18% Similarity=0.302 Sum_probs=47.5
Q ss_pred chHHHHHHHHHHHhhhhhhhccccCCCccEEEEEccCCCccchhHHHH-HHHHHHHHH--hcCCEEEEEeCCHhHHHHHH
Q 005883 564 NSLYLQERISRWVRGEENRIRENNESALKCVILDMTAVTAIDTSGIDA-ISELKKNMD--KRSLQLALVNLVGTVMEKLH 640 (672)
Q Consensus 564 Na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDsSgi~~-L~~l~~~l~--~~gi~l~la~~~~~v~~~L~ 640 (672)
+...+++++.+.+++. +.|+|||++|..+-+|-++. +-.+.+++. .-..++.+.|.++++.+.++
T Consensus 2 ~G~~~~~~i~~~l~~~------------~~V~lDF~gv~~~~ssFl~eafg~l~~~~~~~~~~~~l~~~~~~~~~~~~I~ 69 (74)
T PF14213_consen 2 DGERLRDEIEPALKEG------------EKVVLDFEGVESITSSFLNEAFGQLVREFGEEEIKKRLKFKNANESIKEMIK 69 (74)
T ss_pred ChHHHHHHHHHHHhcC------------CeEEEECCCcccccHHHHHHHHHHHHHHcCHHHHhheeEEecCCHHHHHHHH
Confidence 4567888888776654 44999999999888887653 444444433 22458889999999888877
Q ss_pred h
Q 005883 641 Q 641 (672)
Q Consensus 641 ~ 641 (672)
+
T Consensus 70 ~ 70 (74)
T PF14213_consen 70 R 70 (74)
T ss_pred H
Confidence 5
No 38
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=86.89 E-value=1 Score=44.27 Aligned_cols=76 Identities=17% Similarity=0.275 Sum_probs=63.6
Q ss_pred CCccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEEEEEe-----CCHhHHHHHHhCCCccccCCCccccCHHHHHHH
Q 005883 589 SALKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQLALVN-----LVGTVMEKLHQSKTLDSFRSKGLYLTVGEAVDD 663 (672)
Q Consensus 589 ~~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~-----~~~~v~~~L~~sg~~~~~~~~~if~tv~eAv~~ 663 (672)
..++-+.+|+|++-++.-.++--=.|..+.+++.+.++.|+. -+.++.+.|++.||. +.++.+|.+.-.|.+.
T Consensus 5 ~~v~gvLlDlSGtLh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~--v~eeei~tsl~aa~~~ 82 (262)
T KOG3040|consen 5 RAVKGVLLDLSGTLHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFD--VSEEEIFTSLPAARQY 82 (262)
T ss_pred cccceEEEeccceEecccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCC--ccHHHhcCccHHHHHH
Confidence 357899999999999998887777788888998999998873 245688899999994 5567899999999999
Q ss_pred HHh
Q 005883 664 LSS 666 (672)
Q Consensus 664 ~~~ 666 (672)
+++
T Consensus 83 ~~~ 85 (262)
T KOG3040|consen 83 LEE 85 (262)
T ss_pred HHh
Confidence 886
No 39
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=86.01 E-value=10 Score=43.76 Aligned_cols=106 Identities=16% Similarity=0.124 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCcccCCChhhhhHhhhhhhhhccCcccccccchhhHHH--hhhCC----Cc--
Q 005883 356 AIKTGIITGILSLTEGIAVGRTFASLHNYQVDGNKEMIAIGFMNIVGCCFSCYVTTGSFSRSAVN--YNAGA----KT-- 427 (672)
Q Consensus 356 ~~~~ai~~~iv~l~e~ia~~~~~a~~~~~~id~nqEl~a~Gi~Niv~s~fg~~p~t~s~srSav~--~~~G~----rT-- 427 (672)
-+..++..+++.+=++++.+. . .| .++-.-|.+-=++-++-++||+.|.-.+-..++.. ..+.. .+
T Consensus 24 Dl~AGltva~valP~ama~a~-~---aG--v~p~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~~i~~~~~~g~ 97 (554)
T COG0659 24 DLLAGLTVAAVALPLAMAFAI-A---AG--VPPEAGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAAVIASLVETGL 97 (554)
T ss_pred HHHHHHHHHHHHhHHHHHHHH-H---cC--CCHHHHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHHHHHHHHHHHH
Confidence 344566777888877777666 2 23 88889999999999999999999865433222222 11111 12
Q ss_pred ---hhHHHHHHHHHHHHHHH-hhhhhhhchHHHHHHHHHHHHhc
Q 005883 428 ---IFSNIVMAATVLVTLLF-LMPLFHYTPDFVLAAIIITAVVG 467 (672)
Q Consensus 428 ---~ls~iv~a~~~ll~ll~-l~~l~~~iP~~vLaaiii~~~~~ 467 (672)
-++.+.+|++.+++.++ ++-+..++|.+|+.|.+--.++.
T Consensus 98 ~~~~~~tllaGv~~i~~G~lRLG~li~fip~pVl~Gf~~Giai~ 141 (554)
T COG0659 98 ALAFLATLLAGVFQILLGLLRLGRLIRFIPRPVLIGFTAGIAIL 141 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHH
Confidence 24555666666666555 88999999999998865544433
No 40
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=85.81 E-value=29 Score=38.31 Aligned_cols=111 Identities=12% Similarity=0.118 Sum_probs=66.3
Q ss_pred HHHHHHHHhhHHH----HHHHhCCCc-----hhhhhhhhhhhhhhhhccCCcccccchhhHHHHHHHHhhhccccCCCch
Q 005883 118 LTIASLAIPQGIS----YAKLANLQP-----IIGLYSSFVPPIVYSVLGSSRHIGIGPVSVASLVMGTMLDGEVSHSNKK 188 (672)
Q Consensus 118 ltv~~~~iPq~~a----ya~laglpp-----~~GLyss~v~~liy~l~Gss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~ 188 (672)
++++++..-++++ .+...|-++ .-++.+-.+++++-++||+.+..... -.+.+... .+. .+
T Consensus 225 ~~~~lv~~~esig~~~a~~~~~g~~~~~~~~~~~l~~~Gi~~i~aglfG~~p~t~~~---~~~~~~~~--tg~----~s- 294 (406)
T TIGR03173 225 IIVYLVSMVETTGDFLALGEITGRPITEKDLAGGLRADGLGSALGGLFNTFPYTSFS---QNVGLVQL--TGV----KS- 294 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCchhccchHHhccHHHHHHHHhCCCCCcchh---hhHHHHHH--hCC----Cc-
Confidence 3455555555444 444555432 26899999999999999987644322 21111110 010 01
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh-hhcchhhccchhHHHHHHHHHHHHHHHHhhhhh
Q 005883 189 DLYLELAFTSTLFAGLFQASLGIF-RLGFIIDFLSKATLIGFMAGAAVIVSLQQLKGL 245 (672)
Q Consensus 189 ~~~~~~a~~~t~l~Gv~~~~lG~l-rlg~l~~~lp~~vi~Gf~~g~gl~i~~~ql~~~ 245 (672)
+ .....+|++.+++|++ +++.+..++|.|++.|.+...--.+....++.+
T Consensus 295 ----r---~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l~~~~~i~~~g~~~l 345 (406)
T TIGR03173 295 ----R---YVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGLVMFGMVAASGIRIL 345 (406)
T ss_pred ----h---HhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1336678888888887 589999999999999955533333444444433
No 41
>PRK11660 putative transporter; Provisional
Probab=81.53 E-value=30 Score=40.11 Aligned_cols=170 Identities=14% Similarity=0.134 Sum_probs=118.1
Q ss_pred CcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccCCChhhhhHhhhhhhhhccCcccccccchhhHHHhhh
Q 005883 344 NKLYFHGPHLQLAIKTGIITGILSLTEGIAVGRTFASLHNYQVDGNKEMIAIGFMNIVGCCFSCYVTTGSFSRSAVNYNA 423 (672)
Q Consensus 344 p~~~~~~~~~~~~~~~ai~~~iv~l~e~ia~~~~~a~~~~~~id~nqEl~a~Gi~Niv~s~fg~~p~t~s~srSav~~~~ 423 (672)
.+++.....+..++.++++..+.++....+..+..+++.+.+-+.--.=.+-=++.++|++-++-..+-+........++
T Consensus 273 ~~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~~~~~~~d~n~EL~a~G~aNi~~~~fgg~p~~~s~srSa~n~~aGarT 352 (568)
T PRK11660 273 LSWDLIRALLPAAFSMAMLGAIESLLCAVVLDGMTGTKHSANSELVGQGLGNIVAPFFGGITATAAIARSAANVRAGATS 352 (568)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHhHHHHHHHHhCcccccchHHHHHHHHhcCCCc
Confidence 34444457888999999998899888888888777787777777766667777888999998877767778888888888
Q ss_pred CCCchhHHHHHHHHHHHH--HHHhhhhhhhchHHHHHHHHHHHHhccCCHHHHHHHhhcCchhhhHH-Hhhhhhhhhhhh
Q 005883 424 GAKTIFSNIVMAATVLVT--LLFLMPLFHYTPDFVLAAIIITAVVGLVDYKAALRLWKLDKLDFVAC-CCSFFGVLFISV 500 (672)
Q Consensus 424 G~rT~ls~iv~a~~~ll~--ll~l~~l~~~iP~~vLaaiii~~~~~li~~~~~~~l~k~~~~d~~v~-~~t~~~~~~~~v 500 (672)
+--+=.++++..+++++. ++-.-|.-..=+.-+..++-+.-.-.+.+ .+++..|.+..-++++ +.+++.-+..|+
T Consensus 353 ~la~iv~a~~~ll~ll~l~~ll~~iP~~vLa~ili~~~~~m~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~gi 430 (568)
T PRK11660 353 PISAVIHALLVLLALLVLAPLLSYLPLSAMAALLLMVAWNMSEAHKVVD--LLRHAPKDDIIVMLLCMSLTVLFDMVIAI 430 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhhHHHHHH--HHHhCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence 887778888777766555 33455555444555555555443222332 2233444455566554 456667788999
Q ss_pred hhhHHHHHHHHHHHH
Q 005883 501 QIGLAIAVGVSVFKI 515 (672)
Q Consensus 501 ~~Gl~~gv~~sl~~~ 515 (672)
..|+.++++.-+...
T Consensus 431 ~~Gi~~s~~~~~~~~ 445 (568)
T PRK11660 431 SVGIVLASLLFMRRI 445 (568)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998866554
No 42
>PRK09928 choline transport protein BetT; Provisional
Probab=79.33 E-value=1.4e+02 Score=35.28 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhhhhhhhccccCCCccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEEEEEe
Q 005883 567 YLQERISRWVRGEENRIRENNESALKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQLALVN 630 (672)
Q Consensus 567 ~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~ 630 (672)
.-|+|+.+.+....++ + --.|+|.++.-+++|+.+|++++|.+..+..
T Consensus 528 ~w~~RL~~~~~~p~~~-------~---------~~~f~~~~~~pA~~~v~~el~~~g~~~~~~~ 575 (679)
T PRK09928 528 NWKQRLSRVMNYPGTR-------Y---------TRRMLDTVCRPAMEEVAQELRLRGAYVELNE 575 (679)
T ss_pred cHHHHHHHHhcCCCHH-------H---------HHHHHHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4788888876532111 0 1358999999999999999999999988764
No 43
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=77.84 E-value=14 Score=41.07 Aligned_cols=116 Identities=12% Similarity=0.154 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHhhHH----HHHHHhCCCc------hhhhhhhhhhhhhhhhccCCcccccchhhHHHHHHHHhhhcccc
Q 005883 114 LIAGLTIASLAIPQGI----SYAKLANLQP------IIGLYSSFVPPIVYSVLGSSRHIGIGPVSVASLVMGTMLDGEVS 183 (672)
Q Consensus 114 ~~aGltv~~~~iPq~~----aya~laglpp------~~GLyss~v~~liy~l~Gss~~~~~Gp~a~~sl~~~~~v~~~~~ 183 (672)
+..=+.++++.+-+++ +.+..+|.++ .-++.+-.+++++-++||+.+......... ++..-+
T Consensus 236 ~~~~~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l~adGl~~i~aglfG~~p~t~~sen~g-------~~~~T~- 307 (415)
T TIGR00801 236 ILTMLPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGVLADGLATLLAGLFGGFPNTTFAQNIG-------VIALTR- 307 (415)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchHHHhhHHHHHHHhcCCCCCcchhhhhe-------eeeecC-
Confidence 3333455555555555 4455566532 378999999999999999875544322111 011000
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHh-hhcchhhccchhHHHHHHHHHHHHHHHHhhhhhh
Q 005883 184 HSNKKDLYLELAFTSTLFAGLFQASLGIF-RLGFIIDFLSKATLIGFMAGAAVIVSLQQLKGLL 246 (672)
Q Consensus 184 ~~~~~~~~~~~a~~~t~l~Gv~~~~lG~l-rlg~l~~~lp~~vi~Gf~~g~gl~i~~~ql~~~l 246 (672)
.. -+ .+...+|++.+++|++ +++.++..+|.|++.|.....--.+..+.++.+.
T Consensus 308 -~~-----sr---~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l~~~~~i~~~gi~~l~ 362 (415)
T TIGR00801 308 -VA-----SR---WVIVGAAVILIALGFFPKIAALITSIPSPVLGGASIVMFGMIAASGIRILI 362 (415)
T ss_pred -CC-----ch---HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 11 1456678888888988 5899999999999999777665566666666554
No 44
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=77.76 E-value=9.4 Score=42.54 Aligned_cols=159 Identities=16% Similarity=0.090 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHhhhcCCcccccccchhHHHHHHHHHHHHHhhCCCCCeeEeecCCC----CCCCCCCCcccC-ChhhHHH
Q 005883 281 CFLIFLLVARFISTRKPRLFWVSAAAPLTSVILSSLLIFLLKSKLKHVSIIGHLPK----GVNPTSENKLYF-HGPHLQL 355 (672)
Q Consensus 281 ~~l~~ll~~~~~~~r~~~~~~i~~~~~Li~vi~~t~is~~~~~~~~~v~~vg~ip~----glp~p~~p~~~~-~~~~~~~ 355 (672)
+.++.+...-.+++..|. + --.+.+++|.++.|...+ ..|.+.. ..|..++|++.. ....-+.
T Consensus 178 la~~tl~~il~~~~f~~g-~-----~~~i~ILiGlv~G~~la~------~~G~vdf~~v~~a~w~~~P~~~~fg~~F~~~ 245 (451)
T COG2233 178 LALVTLLIILLINRFGKG-F-----LRRIPILIGLVVGYLLAL------FMGMVDFSGVAEAPWFALPTPFYFGMAFDWG 245 (451)
T ss_pred HHHHHHHHHHHHHHHhhh-H-----HHHHHHHHHHHHHHHHHH------HhCCcCccccccCceeeCCcccCCCeeecHH
Confidence 344444444444443332 1 456778888888887754 2333222 244555665432 2244566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCcccCCChhhhhHhhhhhhhhccCcccccccchhhHHHhhhCCCchhHHHHHH
Q 005883 356 AIKTGIITGILSLTEGIAVGRTFASLHNYQVDGNKEMIAIGFMNIVGCCFSCYVTTGSFSRSAVNYNAGAKTIFSNIVMA 435 (672)
Q Consensus 356 ~~~~ai~~~iv~l~e~ia~~~~~a~~~~~~id~nqEl~a~Gi~Niv~s~fg~~p~t~s~srSav~~~~G~rT~ls~iv~a 435 (672)
++...+.++++.+.|+++--++.++..+++.|.++.+..--.++-++++.++.-++-..+--+-|...=.-|+..+-...
T Consensus 246 ail~m~~v~iV~~~E~~G~i~A~~~itg~~~~~~~~l~rg~~aDGlat~iag~fg~~p~TtfaqNiGvv~lT~v~Sr~V~ 325 (451)
T COG2233 246 AILTMLPVAIVTIVEHTGDITATGEITGRDLDGKPRLRRGLLADGLATLIAGLFGGFPNTTFAQNIGVVALTGVYSRYVI 325 (451)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHhHhCCcCccCcccccceeeccHHHHHHHhcCCCCCCchhhceeeeeeccCChhHHH
Confidence 77778899999999999999999999999999999999999999999999998866544444444443347777776655
Q ss_pred HHHHHHHHHhhhhhhhchHH
Q 005883 436 ATVLVTLLFLMPLFHYTPDF 455 (672)
Q Consensus 436 ~~~ll~ll~l~~l~~~iP~~ 455 (672)
......+. ++..+|+.
T Consensus 326 ~~aavili----~lgl~pk~ 341 (451)
T COG2233 326 AGAAVILI----LLGLFPKF 341 (451)
T ss_pred HHHHHHHH----HHHhhHHH
Confidence 54443332 34455653
No 45
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=75.11 E-value=4.8 Score=44.31 Aligned_cols=71 Identities=13% Similarity=0.018 Sum_probs=34.1
Q ss_pred HHHHHhhhcC--CcccCCCh----hhhhHhhhhhhhhccCcccccccchhhHHHhhhCCCchhHHHHHHHHHHHHHH
Q 005883 373 AVGRTFASLH--NYQVDGNK----EMIAIGFMNIVGCCFSCYVTTGSFSRSAVNYNAGAKTIFSNIVMAATVLVTLL 443 (672)
Q Consensus 373 a~~~~~a~~~--~~~id~nq----El~a~Gi~Niv~s~fg~~p~t~s~srSav~~~~G~rT~ls~iv~a~~~ll~ll 443 (672)
...++.+... ++..+.+. ++..-=.++-+++.+++.-++.+..-..-|...=.-|+.++-.++..-...+.
T Consensus 244 ~~~es~G~~~a~~~~~~~~~~~~~~~~r~l~~dg~~~~l~gl~G~~~~t~~~en~g~i~~t~v~Sr~~~~~a~~~~i 320 (389)
T PF00860_consen 244 AMFESIGTIVAVARIAGKDDPRPPRIRRGLLADGLGTILAGLFGTSPTTTYSENAGGIAATGVASRRVGLTAGVILI 320 (389)
T ss_dssp HHHHHHHHHHHHHHHHTS-TCCCCCHHHHHHHHHHHHHHHHHHT---EEE-HHHHHHHHHHTB--HHHHHHHHHHHH
T ss_pred HhhhhhhhHHHHHHHhCCCCccchhhcccceeeeeeeeechhhcCCCCccccccchhhhhhccccceeeeHHHHHHH
Confidence 3444444433 23445433 35555566677777777776655555554444334555655655555544443
No 46
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=73.63 E-value=12 Score=32.87 Aligned_cols=70 Identities=13% Similarity=0.206 Sum_probs=54.9
Q ss_pred EEEEEecCceEEechHHHHHHHHHHHhhhhhhhccccCCCccEEEEEccCCCccchhHHHHHHHHHHHH---HhcCCEEE
Q 005883 551 FLILSIESPIFFANSLYLQERISRWVRGEENRIRENNESALKCVILDMTAVTAIDTSGIDAISELKKNM---DKRSLQLA 627 (672)
Q Consensus 551 v~Iirl~g~L~F~Na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDsSgi~~L~~l~~~l---~~~gi~l~ 627 (672)
.-++++.|.=+=-|+..|-+-+.+|++.--+ ...+.+.+++ .+.|++||...+|.++.+.+ .++|.++.
T Consensus 9 ~g~l~i~GeSypEn~~~Fy~Pi~~wl~~Yl~-------~~~~~i~~~~-~L~YfNTSSsk~l~~i~~~Le~~~~~g~~V~ 80 (99)
T PF09345_consen 9 TGRLEISGESYPENAFAFYQPILDWLEAYLA-------EPNKPITFNF-KLSYFNTSSSKALMDIFDLLEDAAQKGGKVT 80 (99)
T ss_pred CCEEEEecccCccCHHHHHHHHHHHHHHHHh-------CCCCcEEEEE-EEEEEecHhHHHHHHHHHHHHHHHhcCCcEE
Confidence 3468888998889999999999999875421 1356677888 68999999999999998888 45677665
Q ss_pred E
Q 005883 628 L 628 (672)
Q Consensus 628 l 628 (672)
+
T Consensus 81 v 81 (99)
T PF09345_consen 81 V 81 (99)
T ss_pred E
Confidence 4
No 47
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=69.07 E-value=29 Score=38.80 Aligned_cols=140 Identities=13% Similarity=-0.026 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeeEeecCCCCCCCCCCCcccCCh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 005883 307 PLTSVILSSLLIFLLKSKLKHVSIIGHLPKGVNPTSENKLYFHG--PHLQLAIKTGIITGILSLTEGIAVGRTFASLHNY 384 (672)
Q Consensus 307 ~Li~vi~~t~is~~~~~~~~~v~~vg~ip~glp~p~~p~~~~~~--~~~~~~~~~ai~~~iv~l~e~ia~~~~~a~~~~~ 384 (672)
-..+++++.+++|..-.- ..|.=......-.+..+.|.. +.-..++...+..+++...|+++.-++.++..++
T Consensus 195 ~~~svLiGiv~G~v~a~~-----~~g~d~~~v~~a~w~~~pfG~P~~F~~~~il~~~~~~lv~~~e~iG~~~a~~~~~~~ 269 (433)
T PRK11412 195 ARYSLLVGTIVGWILWAF-----CFPSSHSLSGELHWQWFPLGSGGALEPGIILTAVITGLVNISNTYGAIRGTDVFYPQ 269 (433)
T ss_pred HHHHHHHHHHHHHHHHHH-----HhCCCcchhccCCceeecCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 456677777777765310 012200011111122344433 2455666677888999999999999999999888
Q ss_pred ccCCChhhhhHhhhhhhhhccCcccccccchhhHHHhhhCCCchhHHHHHHHHHHHHHHHhhhhhhhchHH
Q 005883 385 QVDGNKEMIAIGFMNIVGCCFSCYVTTGSFSRSAVNYNAGAKTIFSNIVMAATVLVTLLFLMPLFHYTPDF 455 (672)
Q Consensus 385 ~id~nqEl~a~Gi~Niv~s~fg~~p~t~s~srSav~~~~G~rT~ls~iv~a~~~ll~ll~l~~l~~~iP~~ 455 (672)
+.+.++++..--.++=+++++++.-++....-.+-|...=+-|+..+-.....--..+. ++..+|+.
T Consensus 270 ~~~~~~~l~rgi~~dGi~s~laglfg~~p~tt~sqNvGvi~~TgV~SR~v~~~aa~ili----llgl~PK~ 336 (433)
T PRK11412 270 QGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYRRRSFIYGSVMCL----LVALIPAL 336 (433)
T ss_pred CCCCCcccccchhhccHHHHHHHhcCCCCCCchhhhhhhhhhcCCchhHHHHHHHHHHH----HHHHHHHH
Confidence 88879999999999999999999887766665665655556788777776655444432 23445653
No 48
>PRK10444 UMP phosphatase; Provisional
Probab=65.84 E-value=14 Score=38.04 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=54.0
Q ss_pred ccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEEEEEeCC-----HhHHHHHHhCCCccccCCCccccCHHHHHHHHH
Q 005883 591 LKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQLALVNLV-----GTVMEKLHQSKTLDSFRSKGLYLTVGEAVDDLS 665 (672)
Q Consensus 591 ~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~-----~~v~~~L~~sg~~~~~~~~~if~tv~eAv~~~~ 665 (672)
++.+++|+.++-+-+-.-+.--.+..+.++++|++++++..+ .+..++|+..|+. +.+++++.+-..+.++.+
T Consensus 1 ~~~v~~DlDGtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~--~~~~~i~ts~~~~~~~L~ 78 (248)
T PRK10444 1 IKNVICDIDGVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVD--VPDSVFYTSAMATADFLR 78 (248)
T ss_pred CcEEEEeCCCceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC--CCHhhEecHHHHHHHHHH
Confidence 367999999998877655555667888899999999887433 3467888888983 446677777666666655
Q ss_pred h
Q 005883 666 S 666 (672)
Q Consensus 666 ~ 666 (672)
+
T Consensus 79 ~ 79 (248)
T PRK10444 79 R 79 (248)
T ss_pred h
Confidence 4
No 49
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=65.42 E-value=13 Score=38.75 Aligned_cols=74 Identities=14% Similarity=0.059 Sum_probs=55.1
Q ss_pred ccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEEEEEeC-----CHhHHHHHHhCCCccccCCCccccCHHHHHHHHH
Q 005883 591 LKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQLALVNL-----VGTVMEKLHQSKTLDSFRSKGLYLTVGEAVDDLS 665 (672)
Q Consensus 591 ~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~-----~~~v~~~L~~sg~~~~~~~~~if~tv~eAv~~~~ 665 (672)
.+.+++|+.++-+-+..-+.-..+..++++++|++++++.. ..+..++|++.|+... .++++.+..-+.++.+
T Consensus 2 ~~~~~~D~DGtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~--~~~i~ts~~~~~~~l~ 79 (279)
T TIGR01452 2 AQGFIFDCDGVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGL--AEQLFSSALCAARLLR 79 (279)
T ss_pred ccEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCC--hhhEecHHHHHHHHHH
Confidence 57899999998877666665567888888999999987743 2345578888998533 4678888777767665
Q ss_pred h
Q 005883 666 S 666 (672)
Q Consensus 666 ~ 666 (672)
+
T Consensus 80 ~ 80 (279)
T TIGR01452 80 Q 80 (279)
T ss_pred h
Confidence 5
No 50
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=65.08 E-value=21 Score=37.41 Aligned_cols=77 Identities=14% Similarity=0.128 Sum_probs=61.9
Q ss_pred ccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEEEEEeC-----CHhHHHHHHhCCCccccCCCccccCHHHHHHHHH
Q 005883 591 LKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQLALVNL-----VGTVMEKLHQSKTLDSFRSKGLYLTVGEAVDDLS 665 (672)
Q Consensus 591 ~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~-----~~~v~~~L~~sg~~~~~~~~~if~tv~eAv~~~~ 665 (672)
..++|+||.+|--.-...+.--.|..+.+++.|.++.++.. +++-.+++++.|+.. ++++.+|.+...+..+.+
T Consensus 22 ~DtfifDcDGVlW~g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~-v~e~~i~ssa~~~a~ylk 100 (306)
T KOG2882|consen 22 FDTFIFDCDGVLWLGEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNS-VKEENIFSSAYAIADYLK 100 (306)
T ss_pred cCEEEEcCCcceeecCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccc-cCcccccChHHHHHHHHH
Confidence 78999999999887777777777888999999998888643 335667889999955 788899999888888776
Q ss_pred hhc
Q 005883 666 SSW 668 (672)
Q Consensus 666 ~~l 668 (672)
+..
T Consensus 101 ~~~ 103 (306)
T KOG2882|consen 101 KRK 103 (306)
T ss_pred HhC
Confidence 543
No 51
>PLN02645 phosphoglycolate phosphatase
Probab=63.84 E-value=26 Score=37.28 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=52.0
Q ss_pred ccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEEEEEeC-C----HhHHHHHHhCCCccccCCCccccCHHHHHHHHH
Q 005883 591 LKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQLALVNL-V----GTVMEKLHQSKTLDSFRSKGLYLTVGEAVDDLS 665 (672)
Q Consensus 591 ~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~-~----~~v~~~L~~sg~~~~~~~~~if~tv~eAv~~~~ 665 (672)
.+.+++|+.++-+-+..-+.--.+..++++++|++++++.. + .++.++|+..|+. ...+.++.+...+....+
T Consensus 28 ~~~~~~D~DGtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~--~~~~~I~ts~~~~~~~l~ 105 (311)
T PLN02645 28 VETFIFDCDGVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLN--VTEEEIFSSSFAAAAYLK 105 (311)
T ss_pred CCEEEEeCcCCeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCC--CChhhEeehHHHHHHHHH
Confidence 78999999998877665555557888889999999988743 2 4466778889984 334567766554444433
No 52
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=63.27 E-value=12 Score=38.49 Aligned_cols=74 Identities=19% Similarity=0.263 Sum_probs=53.3
Q ss_pred ccEEEEEccCCCccchh----HHHHHHHHHHHHHhcCCEEEEEeCC-----HhHHHHHHhCCCccccCCCccccCHHHHH
Q 005883 591 LKCVILDMTAVTAIDTS----GIDAISELKKNMDKRSLQLALVNLV-----GTVMEKLHQSKTLDSFRSKGLYLTVGEAV 661 (672)
Q Consensus 591 ~~~vILD~s~V~~IDsS----gi~~L~~l~~~l~~~gi~l~la~~~-----~~v~~~L~~sg~~~~~~~~~if~tv~eAv 661 (672)
++.+++|+.++-+-+.. .+..-.+..++++++|++++++..+ .++.++|+..|+. +.++.++.+-..+.
T Consensus 1 ~k~i~~D~DGtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~--~~~~~i~ts~~~~~ 78 (257)
T TIGR01458 1 VKGVLLDISGVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFD--ISEDEVFTPAPAAR 78 (257)
T ss_pred CCEEEEeCCCeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCC--CCHHHeEcHHHHHH
Confidence 36899999998775544 3444556667788899999887531 2477889999984 56678888877777
Q ss_pred HHHHh
Q 005883 662 DDLSS 666 (672)
Q Consensus 662 ~~~~~ 666 (672)
+++++
T Consensus 79 ~~l~~ 83 (257)
T TIGR01458 79 QLLEE 83 (257)
T ss_pred HHHHh
Confidence 76654
No 53
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=61.11 E-value=1.1e+02 Score=27.58 Aligned_cols=100 Identities=14% Similarity=0.124 Sum_probs=67.7
Q ss_pred CCEEEEEecCc-eEEechHHHHHHHHHHHhhhhhhhccccCCCccEEEEEccCCC--ccchhHHHHHHHHHHHHHhcCCE
Q 005883 549 PSFLILSIESP-IFFANSLYLQERISRWVRGEENRIRENNESALKCVILDMTAVT--AIDTSGIDAISELKKNMDKRSLQ 625 (672)
Q Consensus 549 ~~v~Iirl~g~-L~F~Na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~--~IDsSgi~~L~~l~~~l~~~gi~ 625 (672)
+++.|..+.+. .--.+.+...+-+...-+ .+...+++|-+.++ |.|.+- +.--++.+.+...+++
T Consensus 4 ~~~~v~~~~s~~~~i~~~qdalDLi~~~~~-----------~~~~~i~l~~~~l~~dFF~L~T-glAGeiLQKf~NY~ik 71 (113)
T PF13788_consen 4 NGIRVAEVSSDEPLISDEQDALDLIGTAYE-----------HGADRIILPKEALSEDFFDLRT-GLAGEILQKFVNYRIK 71 (113)
T ss_pred CCeEEEEEeCCCCeecchhHHHHHHHHHHH-----------cCCCEEEEEhHHCCHHHHHhhc-chHHHHHHHHHhhcee
Confidence 45556665433 344555555554444322 24789999988765 566554 5566788888889999
Q ss_pred EEEEe------CCHhHHHHHHhCCCccccCCCccccCHHHHHHH
Q 005883 626 LALVN------LVGTVMEKLHQSKTLDSFRSKGLYLTVGEAVDD 663 (672)
Q Consensus 626 l~la~------~~~~v~~~L~~sg~~~~~~~~~if~tv~eAv~~ 663 (672)
+.+++ .+...++....++=.+.+ ++++|.+||+++
T Consensus 72 lAivGD~s~~~~S~~l~dfi~EsN~G~~~---~F~~~~~eA~~~ 112 (113)
T PF13788_consen 72 LAIVGDFSAYATSKSLRDFIYESNRGNHF---FFVPDEEEAIAW 112 (113)
T ss_pred EEEEEcccccccchhHHHHHHHhcCCCeE---EEECCHHHHHhh
Confidence 99883 455677777777765555 799999999986
No 54
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=60.72 E-value=45 Score=37.26 Aligned_cols=109 Identities=13% Similarity=0.124 Sum_probs=68.9
Q ss_pred HHHHHHHHhhHHHH----HHHhC--CCc--hhhhhhhhhhhhhhhhccCCcccccchhhHHHHHHHHhhhccccCCCchh
Q 005883 118 LTIASLAIPQGISY----AKLAN--LQP--IIGLYSSFVPPIVYSVLGSSRHIGIGPVSVASLVMGTMLDGEVSHSNKKD 189 (672)
Q Consensus 118 ltv~~~~iPq~~ay----a~lag--lpp--~~GLyss~v~~liy~l~Gss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~ 189 (672)
+..+++..-++++- +..++ .++ .-|+.+-.+++++-+++|+++....+-.... ++.
T Consensus 253 ~~~~lv~~~esiG~~~a~~~~~~~~~~~~i~r~l~adGl~t~~agl~g~~p~tt~~en~g~-------i~~--------- 316 (429)
T TIGR03616 253 APVALILVAENLGHFKAVAGMTGRNLDPYMGRAFVGDGLATMLSGSVGGTGVTTYAENIGV-------MAV--------- 316 (429)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhCCCCCchhccchhhhhHHHHHHHhcCCCCCcceeeeeee-------eee---------
Confidence 33344444454443 33444 333 3789999999999999998765433211110 000
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHhh-hcchhhccchhHHHHHHHHHHHHHHHHhhhh
Q 005883 190 LYLELAF-TSTLFAGLFQASLGIFR-LGFIIDFLSKATLIGFMAGAAVIVSLQQLKG 244 (672)
Q Consensus 190 ~~~~~a~-~~t~l~Gv~~~~lG~lr-lg~l~~~lp~~vi~Gf~~g~gl~i~~~ql~~ 244 (672)
.+++. .+...+|++.+++|++. ++.++..+|.||+.|.+.-.--.+..+.++.
T Consensus 317 --T~v~SR~v~~~a~~~lillgl~Pk~~al~~~IP~pVlgG~~i~~fg~i~~~Gi~~ 371 (429)
T TIGR03616 317 --TKVYSTLVFVAAAVFAILLGFSPKFGALIHTIPVAVLGGASIVVFGLIAVAGARI 371 (429)
T ss_pred --cCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 00110 23455688888999884 8999999999999998887666777777773
No 55
>COG0573 PstC ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=57.54 E-value=2.4e+02 Score=29.96 Aligned_cols=42 Identities=31% Similarity=0.517 Sum_probs=29.1
Q ss_pred cccccc-----CCChhh-hHhhHHHHHHHHHHHHhhHHHHHH-HhC-CCc
Q 005883 98 ILRWAP-----HYSLSL-FRSDLIAGLTIASLAIPQGISYAK-LAN-LQP 139 (672)
Q Consensus 98 i~~wl~-----~Y~~~~-l~~D~~aGltv~~~~iPq~~aya~-lag-lpp 139 (672)
-.+|=| +|-.-- +.+-++.-+..-++++|.|++.|. ++- .||
T Consensus 63 ~~~W~p~~~~~~~G~l~~i~GTli~s~iA~liAvP~gi~~Aifl~E~~~p 112 (310)
T COG0573 63 GTEWNPTNAQPQYGALPPIAGTLITSLIALLIAVPVGIGTAIFLSEYAPP 112 (310)
T ss_pred cCccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCc
Confidence 346777 344333 567888888888999999999987 333 444
No 56
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=57.05 E-value=31 Score=36.38 Aligned_cols=60 Identities=20% Similarity=0.243 Sum_probs=48.6
Q ss_pred CCccEEEEEccCCCccchhHH----HHHHHHHHHHHhcCCEEEEEe--CCHhHHHHHHhCCCcccc
Q 005883 589 SALKCVILDMTAVTAIDTSGI----DAISELKKNMDKRSLQLALVN--LVGTVMEKLHQSKTLDSF 648 (672)
Q Consensus 589 ~~~~~vILD~s~V~~IDsSgi----~~L~~l~~~l~~~gi~l~la~--~~~~v~~~L~~sg~~~~~ 648 (672)
+..+.+++|+.+.-.=|..-+ ....+..++++++|+.+.++. .++.+.+.|+..|+.+.+
T Consensus 124 ~~~kvIvFDLDgTLi~~~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YF 189 (301)
T TIGR01684 124 EPPHVVVFDLDSTLITDEEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYF 189 (301)
T ss_pred ccceEEEEecCCCCcCCCCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCccc
Confidence 357899999988666665433 567889999999999999986 677888999999998655
No 57
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=56.19 E-value=35 Score=31.66 Aligned_cols=73 Identities=15% Similarity=0.141 Sum_probs=48.6
Q ss_pred CccEEEEEccCCCccchhHHHHHHHHHHHHHhc---CCEEEEEeCC-------HhHHHHHHhCCCccccCCCccccCHHH
Q 005883 590 ALKCVILDMTAVTAIDTSGIDAISELKKNMDKR---SLQLALVNLV-------GTVMEKLHQSKTLDSFRSKGLYLTVGE 659 (672)
Q Consensus 590 ~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~---gi~l~la~~~-------~~v~~~L~~sg~~~~~~~~~if~tv~e 659 (672)
+.+.|.+-+.. .+....+.++.+++++. ++++.+-+.- +..++.+++.|+...++... +.+|
T Consensus 54 ~~d~V~lS~~~-----~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~---~~~~ 125 (137)
T PRK02261 54 DADAILVSSLY-----GHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGT---DPEE 125 (137)
T ss_pred CCCEEEEcCcc-----ccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCC---CHHH
Confidence 36677764433 34556667777777766 6666666642 45778999999865554332 7889
Q ss_pred HHHHHHhhccc
Q 005883 660 AVDDLSSSWKH 670 (672)
Q Consensus 660 Av~~~~~~l~~ 670 (672)
.++++++.+++
T Consensus 126 i~~~l~~~~~~ 136 (137)
T PRK02261 126 AIDDLKKDLNQ 136 (137)
T ss_pred HHHHHHHHhcc
Confidence 99988877653
No 58
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=55.65 E-value=25 Score=36.07 Aligned_cols=73 Identities=14% Similarity=0.170 Sum_probs=52.2
Q ss_pred cEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEEEEEe-----CCHhHHHHHHhCCCccccCCCccccCHHHHHHHHHh
Q 005883 592 KCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQLALVN-----LVGTVMEKLHQSKTLDSFRSKGLYLTVGEAVDDLSS 666 (672)
Q Consensus 592 ~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~-----~~~~v~~~L~~sg~~~~~~~~~if~tv~eAv~~~~~ 666 (672)
+.+++|+.++-+-+..-+.-=.+..++++++|++++++. ....+.++|+..|+. ...+.++.+-..+.++..+
T Consensus 2 ~~~~~D~DGtl~~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~--~~~~~iit~~~~~~~~l~~ 79 (249)
T TIGR01457 2 KGYLIDLDGTMYKGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIP--ATLETVFTASMATADYMND 79 (249)
T ss_pred CEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC--CChhhEeeHHHHHHHHHHh
Confidence 578889888776555444434677788888999999874 245678889999984 3456787777777666654
No 59
>COG5439 Uncharacterized conserved protein [Function unknown]
Probab=54.83 E-value=12 Score=32.02 Aligned_cols=41 Identities=10% Similarity=0.298 Sum_probs=36.0
Q ss_pred ccEEEEEccCCCccchhHHHHHHHHHHHHHhc-CCEEEEEeC
Q 005883 591 LKCVILDMTAVTAIDTSGIDAISELKKNMDKR-SLQLALVNL 631 (672)
Q Consensus 591 ~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~-gi~l~la~~ 631 (672)
+...++|+.++.|..|||+..|..+.-+.+++ ++++++-+.
T Consensus 46 ps~mtinL~gL~FLNSSGInlLakftievRk~pd~~fvvrGs 87 (112)
T COG5439 46 PSEMTINLEGLEFLNSSGINLLAKFTIEVRKKPDTSFVVRGS 87 (112)
T ss_pred hHHhEEecccceeecccchHHHHhhhhhhhcCCCceEEEecC
Confidence 56799999999999999999999998888876 788887654
No 60
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=52.93 E-value=1.1e+02 Score=31.55 Aligned_cols=187 Identities=12% Similarity=0.005 Sum_probs=111.0
Q ss_pred HhhhcCCcccccccchhHHHHHHHHHHHHHhh-CCCCCeeEeecCCC-CCCCCCCCcccCChhhHHHHHHHHHHHHHHHH
Q 005883 291 FISTRKPRLFWVSAAAPLTSVILSSLLIFLLK-SKLKHVSIIGHLPK-GVNPTSENKLYFHGPHLQLAIKTGIITGILSL 368 (672)
Q Consensus 291 ~~~~r~~~~~~i~~~~~Li~vi~~t~is~~~~-~~~~~v~~vg~ip~-glp~p~~p~~~~~~~~~~~~~~~ai~~~iv~l 368 (672)
+..+|+.+...-+....+++.+++.....-.. .+..+ ++...+|. .+|. ...+++.....+..++.++++..+.++
T Consensus 88 ~~~~~~~~~~p~~li~vv~~~~~~~~~~~~~~~v~~~~-~i~~~lp~~~~p~-~~~~~~~~~~~~~~a~~ia~v~~~~s~ 165 (280)
T PF00916_consen 88 RLPSRFWPPIPAPLIVVVLGTLLSWLFLLDKYGVAIVG-EIPSGLPPPSLPS-FDISWSLILDLLPTALAIAIVGFIESL 165 (280)
T ss_pred hccccccccccccceeeehhhhhhhhhhhccccccccc-cccccCccccCcc-cccccccccccchhHHHHHHHHHHHHH
Confidence 34445444444444455566555555543221 11111 11122444 4552 112233344567788888888889888
Q ss_pred HHHHHHHHHhhhcCCcccCCChhhhhHhhhhhhhhccCcccccccchhhHHHhhhCCCchhHHHHHHHHHHHHHHHhhhh
Q 005883 369 TEGIAVGRTFASLHNYQVDGNKEMIAIGFMNIVGCCFSCYVTTGSFSRSAVNYNAGAKTIFSNIVMAATVLVTLLFLMPL 448 (672)
Q Consensus 369 ~e~ia~~~~~a~~~~~~id~nqEl~a~Gi~Niv~s~fg~~p~t~s~srSav~~~~G~rT~ls~iv~a~~~ll~ll~l~~l 448 (672)
...-+.++....+.+.+-+.--.=.+-=++.++||+-+|...+-+...-..+.++..-+-+++++..++++...-++..+
T Consensus 166 ~~~~~~~~~~~~~~d~n~El~a~G~aNi~s~~~gg~p~~~s~srs~~~~~~Ga~t~~s~~~~~~~~l~~l~~~~~~l~~i 245 (280)
T PF00916_consen 166 LIAKSIAKKTGYRIDPNQELIALGLANIVSGLFGGMPGSGSFSRSAVNYRAGARTRLSGLISALFVLLVLLFLAPLLAYI 245 (280)
T ss_pred HhhhhhcccccccCCcHHHHHHhhhccccchhhcccccccccccchHHHhcCcceeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887777777766666555567778888899988888888888888888888888888888888776665554433
Q ss_pred hhhchHHHHHHHHHHHHhccCCHHHHHHHhhc
Q 005883 449 FHYTPDFVLAAIIITAVVGLVDYKAALRLWKL 480 (672)
Q Consensus 449 ~~~iP~~vLaaiii~~~~~li~~~~~~~l~k~ 480 (672)
=...=-+++-.+.+- .+..-+++.+++.-|.
T Consensus 246 P~~~La~ili~~~~~-l~~~~~~~~~~~~~~~ 276 (280)
T PF00916_consen 246 PKAVLAAILIVVGIS-LIDWSSLRRLWRVSKA 276 (280)
T ss_pred HHHHHHHHHHHHHHh-hcCHHHHHHHhcCChh
Confidence 223333333333333 4444444444444443
No 61
>PRK11778 putative inner membrane peptidase; Provisional
Probab=52.22 E-value=1.2e+02 Score=32.55 Aligned_cols=70 Identities=16% Similarity=0.269 Sum_probs=45.7
Q ss_pred CCCEEEEEecCceEEechHHHHHHHHHHHhhhhhhhccccCCCccEEEEEccCCCc-cchhHHHHHHHHHHHHHhcCCEE
Q 005883 548 VPSFLILSIESPIFFANSLYLQERISRWVRGEENRIRENNESALKCVILDMTAVTA-IDTSGIDAISELKKNMDKRSLQL 626 (672)
Q Consensus 548 ~~~v~Iirl~g~L~F~Na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~-IDsSgi~~L~~l~~~l~~~gi~l 626 (672)
.|.+.|++++|++.-.....+++.+...++..+ ++ +.|+|++..-.. ++.++... ...+++++.|..+
T Consensus 89 ~~~v~VI~~~G~I~~~~~~~l~e~i~a~l~~A~--------~~-~aVvLridSpGG~v~~s~~a~--~~l~~lr~~~kpV 157 (330)
T PRK11778 89 KPRLFVLDFKGDIDASEVESLREEITAILAVAK--------PG-DEVLLRLESPGGVVHGYGLAA--SQLQRLRDAGIPL 157 (330)
T ss_pred CCeEEEEEEEEEECCCcchhhHHHHHHHHHhcc--------CC-CeEEEEEeCCCCchhHHHHHH--HHHHHHHhcCCCE
Confidence 478999999999998888888888887664431 12 579999855433 34443322 2244566666655
Q ss_pred EE
Q 005883 627 AL 628 (672)
Q Consensus 627 ~l 628 (672)
+.
T Consensus 158 va 159 (330)
T PRK11778 158 TV 159 (330)
T ss_pred EE
Confidence 44
No 62
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=47.35 E-value=49 Score=33.54 Aligned_cols=73 Identities=11% Similarity=-0.000 Sum_probs=50.2
Q ss_pred CccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEEEEE-eCCHh---HHHHHHhCCCcc-ccCCCccccCHHHHHHHH
Q 005883 590 ALKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQLALV-NLVGT---VMEKLHQSKTLD-SFRSKGLYLTVGEAVDDL 664 (672)
Q Consensus 590 ~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la-~~~~~---v~~~L~~sg~~~-~~~~~~if~tv~eAv~~~ 664 (672)
+.+.+++|+.++-.-...-..--.++.++++++|+++.++ |...+ ..++|+..|+.. .+ +.++.+-+.+.+.+
T Consensus 7 ~~~~~~~D~dG~l~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~--~~Ii~s~~~~~~~l 84 (242)
T TIGR01459 7 DYDVFLLDLWGVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLP--EMIISSGEIAVQMI 84 (242)
T ss_pred cCCEEEEecccccccCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCcccc--ceEEccHHHHHHHH
Confidence 3789999999887766555666788889999999999886 43222 226789999864 44 35666654444433
No 63
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=46.84 E-value=80 Score=31.45 Aligned_cols=67 Identities=9% Similarity=0.051 Sum_probs=42.4
Q ss_pred CEEEEEecCceEEech-------HHHHHHHHHHHhhhhhhhccccCCCccEEEEEccCCCccchhHHHHHHHHHHHHHhc
Q 005883 550 SFLILSIESPIFFANS-------LYLQERISRWVRGEENRIRENNESALKCVILDMTAVTAIDTSGIDAISELKKNMDKR 622 (672)
Q Consensus 550 ~v~Iirl~g~L~F~Na-------~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~ 622 (672)
+|.|+.++|++.-.+. +.+.+.+++..+ .++++.|+|+... ..-|...++.+.+..+.+++.
T Consensus 1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~----------d~~v~~ivL~~~s-~Gg~~~~~~~~~~~l~~~~~~ 69 (211)
T cd07019 1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARL----------DPKVKAIVLRVNS-PGGSVTASEVIRAELAAARAA 69 (211)
T ss_pred CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhh----------CCCceEEEEEEcC-CCcCHHHHHHHHHHHHHHHhC
Confidence 4667778887765543 344454444322 2568999998654 557777777777766677766
Q ss_pred CCEEE
Q 005883 623 SLQLA 627 (672)
Q Consensus 623 gi~l~ 627 (672)
+..++
T Consensus 70 ~kpVi 74 (211)
T cd07019 70 GKPVV 74 (211)
T ss_pred CCCEE
Confidence 55443
No 64
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=46.05 E-value=81 Score=31.54 Aligned_cols=57 Identities=18% Similarity=0.300 Sum_probs=48.0
Q ss_pred CCccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEEEEEeCCHhHHHHHHhCCCcccc
Q 005883 589 SALKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQLALVNLVGTVMEKLHQSKTLDSF 648 (672)
Q Consensus 589 ~~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~~~v~~~L~~sg~~~~~ 648 (672)
..++++.|| .....+|.-++.-++++.+.++++|+-+.++. .+|++.|..+.-.-.+
T Consensus 156 ~~P~fiLLD-EPFAGVDPiaV~dIq~iI~~L~~rgiGvLITD--HNVREtL~i~dRaYIi 212 (243)
T COG1137 156 ANPKFILLD-EPFAGVDPIAVIDIQRIIKHLKDRGIGVLITD--HNVRETLDICDRAYII 212 (243)
T ss_pred cCCCEEEec-CCccCCCchhHHHHHHHHHHHHhCCceEEEcc--ccHHHHHhhhheEEEE
Confidence 357899999 67889999999999999999999999999984 4589999887754433
No 65
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=43.97 E-value=81 Score=28.36 Aligned_cols=68 Identities=10% Similarity=0.100 Sum_probs=46.8
Q ss_pred CccEEEEEccCCCccchhHHHHHHHHHHHHHhc---CCEEEEEe-CCHhHHHHHHhCCCccccCCCccccCHHHHHHHHH
Q 005883 590 ALKCVILDMTAVTAIDTSGIDAISELKKNMDKR---SLQLALVN-LVGTVMEKLHQSKTLDSFRSKGLYLTVGEAVDDLS 665 (672)
Q Consensus 590 ~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~---gi~l~la~-~~~~v~~~L~~sg~~~~~~~~~if~tv~eAv~~~~ 665 (672)
+.+.|.+-++ |..-...+.++.+.+++. ++.+.+.+ ..++..+.++..|+.+.++ -=.+.++.+...+
T Consensus 50 ~~d~V~iS~~-----~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~---~~~~~~~~~~~~~ 121 (122)
T cd02071 50 DVDVIGLSSL-----SGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIFG---PGTSIEEIIDKIR 121 (122)
T ss_pred CCCEEEEccc-----chhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEEC---CCCCHHHHHHHHh
Confidence 3677777444 566677788888888887 44555553 4455678899999987774 3456777777654
No 66
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=43.21 E-value=55 Score=30.31 Aligned_cols=61 Identities=16% Similarity=0.132 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHHHHhcCC--EEEEEeCC-----Hh---HHHHHHhCCCccccCCCccccCHHHHHHHHHhhcc
Q 005883 606 TSGIDAISELKKNMDKRSL--QLALVNLV-----GT---VMEKLHQSKTLDSFRSKGLYLTVGEAVDDLSSSWK 669 (672)
Q Consensus 606 sSgi~~L~~l~~~l~~~gi--~l~la~~~-----~~---v~~~L~~sg~~~~~~~~~if~tv~eAv~~~~~~l~ 669 (672)
++.+..+.++.+.++++|. ..++++-. ++ +++.|++.|+...|++.. +.+|.+++.+..|+
T Consensus 63 ~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt---~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 63 GHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGT---PPEVVIADLKKDLN 133 (134)
T ss_pred ccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCC---CHHHHHHHHHHHhc
Confidence 6777778889999988764 33445442 22 456799999876665443 67888888887764
No 67
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=43.15 E-value=3.2e+02 Score=30.16 Aligned_cols=104 Identities=14% Similarity=0.064 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccCCCh-------hhhhHhhhhhhhhccCcccccccchhh--HHH-hhhC
Q 005883 355 LAIKTGIITGILSLTEGIAVGRTFASLHNYQVDGNK-------EMIAIGFMNIVGCCFSCYVTTGSFSRS--AVN-YNAG 424 (672)
Q Consensus 355 ~~~~~ai~~~iv~l~e~ia~~~~~a~~~~~~id~nq-------El~a~Gi~Niv~s~fg~~p~t~s~srS--av~-~~~G 424 (672)
..+..+++..++++..+.++--.-++.-| .++.| -.++.|++.++=|..-=+|....-|-- +.- ...+
T Consensus 22 s~~~aG~va~lvg~~~~~~iv~~a~~~~g--~s~aq~~swl~a~~~~~Gl~ti~lS~~~r~Pi~~awStPGaAll~~~~~ 99 (395)
T TIGR00843 22 PTLIAGFLAVLIGYAGPAAIFFQAAIKAG--ASTAMIIGWITAIGIAAAVSGIFLSIRFKTPVLTAWSAPGAALLVTGFP 99 (395)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecCchHHHHHHHhcC
Confidence 44556677778888777666544443333 33333 457778888888888788887766621 122 1122
Q ss_pred CCchh-----HHHHHHHHHHHHHH--HhhhhhhhchHHHHHHHH
Q 005883 425 AKTIF-----SNIVMAATVLVTLL--FLMPLFHYTPDFVLAAII 461 (672)
Q Consensus 425 ~rT~l-----s~iv~a~~~ll~ll--~l~~l~~~iP~~vLaaii 461 (672)
. -.+ +.+++|+++++..+ .+..+.+.||.++.++++
T Consensus 100 ~-~~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amL 142 (395)
T TIGR00843 100 G-ISLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAML 142 (395)
T ss_pred C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 1 223 34444554444332 366788999999999987
No 68
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=43.13 E-value=55 Score=34.10 Aligned_cols=78 Identities=13% Similarity=0.138 Sum_probs=59.2
Q ss_pred CccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEEEEEeCC----Hh-HHHHHHhCCCccccCCCccccCHHHHHHHH
Q 005883 590 ALKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQLALVNLV----GT-VMEKLHQSKTLDSFRSKGLYLTVGEAVDDL 664 (672)
Q Consensus 590 ~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~----~~-v~~~L~~sg~~~~~~~~~if~tv~eAv~~~ 664 (672)
+.+.+++|+-+|-+-+...+.-=.+..+.++++|++++|...+ ++ +.++|+..+..+. ..++++.|-+-+.++.
T Consensus 7 ~y~~~l~DlDGvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~-~~~~i~TS~~at~~~l 85 (269)
T COG0647 7 KYDGFLFDLDGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDV-TPDDIVTSGDATADYL 85 (269)
T ss_pred hcCEEEEcCcCceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCC-CHHHeecHHHHHHHHH
Confidence 3678999999999999999999999999999999999886332 22 6677877454432 3457888877777666
Q ss_pred Hhhc
Q 005883 665 SSSW 668 (672)
Q Consensus 665 ~~~l 668 (672)
.++.
T Consensus 86 ~~~~ 89 (269)
T COG0647 86 AKQK 89 (269)
T ss_pred HhhC
Confidence 6543
No 69
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=43.12 E-value=1.2e+02 Score=30.02 Aligned_cols=65 Identities=15% Similarity=0.188 Sum_probs=45.5
Q ss_pred EEEEEecCceE---EechHHHHHHHHHHHhhhhhhhccccCCCccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEE
Q 005883 551 FLILSIESPIF---FANSLYLQERISRWVRGEENRIRENNESALKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQL 626 (672)
Q Consensus 551 v~Iirl~g~L~---F~Na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l 626 (672)
+.+++++|.+. -....++.+.+.+..++ ++++.|+++... ..-|....+.+.+..+.+++.+..+
T Consensus 2 v~vi~i~g~i~~~~~~~~~~l~~~l~~a~~d----------~~i~~ivl~~~s-~Gg~~~~~~~i~~~i~~~~~~~kpv 69 (208)
T cd07023 2 IAVIDIEGTISDGGGIGADSLIEQLRKARED----------DSVKAVVLRINS-PGGSVVASEEIYREIRRLRKAKKPV 69 (208)
T ss_pred EEEEEEEEEEcCCCCCCHHHHHHHHHHHHhC----------CCCcEEEEEEEC-CCCCHHHHHHHHHHHHHHHhcCCcE
Confidence 57889999998 56777777777664322 468999998865 4557777777777777776655444
No 70
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=42.85 E-value=90 Score=31.05 Aligned_cols=87 Identities=14% Similarity=0.200 Sum_probs=50.6
Q ss_pred EEechHHHHHHHHHHHhhhhhhhccccCCCccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEEEEEeC-C-H-hHHH
Q 005883 561 FFANSLYLQERISRWVRGEENRIRENNESALKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQLALVNL-V-G-TVME 637 (672)
Q Consensus 561 ~F~Na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~-~-~-~v~~ 637 (672)
.|.|.+.+.+.+.+ .++..+++|+..+..=|..|++.+.++.+..- +.++++... . + .+.+
T Consensus 22 ~~~~~~~~l~~~~~--------------~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p--~~~iIvlt~~~~~~~~~~ 85 (207)
T PRK11475 22 TFSSQSSFQDAMSR--------------ISFSAVIFSLSAMRSERREGLSCLTELAIKFP--RMRRLVIADDDIEARLIG 85 (207)
T ss_pred EeCCHHHHHHHhcc--------------CCCCEEEeeccccCCCCCCHHHHHHHHHHHCC--CCCEEEEeCCCCHHHHHH
Confidence 35676666554322 23578888887776666779998888876543 456554432 2 2 2445
Q ss_pred HHHhCCCccccCCCccccCHHHHHHH
Q 005883 638 KLHQSKTLDSFRSKGLYLTVGEAVDD 663 (672)
Q Consensus 638 ~L~~sg~~~~~~~~~if~tv~eAv~~ 663 (672)
.+...|...++.++.=...+-+|++.
T Consensus 86 ~~~~~Ga~gyl~K~~~~~eL~~aI~~ 111 (207)
T PRK11475 86 SLSPSPLDGVLSKASTLEILQQELFL 111 (207)
T ss_pred HHHHcCCeEEEecCCCHHHHHHHHHH
Confidence 56567776666544323334444443
No 71
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=41.64 E-value=80 Score=29.09 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=48.2
Q ss_pred ccEEEEEccCCCccchhHHHHHHHHHHHHHhcCC--EEEEEe--CCHhHHHHHHhCCCccccCCCccccCHHHHHHHHHh
Q 005883 591 LKCVILDMTAVTAIDTSGIDAISELKKNMDKRSL--QLALVN--LVGTVMEKLHQSKTLDSFRSKGLYLTVGEAVDDLSS 666 (672)
Q Consensus 591 ~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi--~l~la~--~~~~v~~~L~~sg~~~~~~~~~if~tv~eAv~~~~~ 666 (672)
.+.+.+ +..|.+-...+.++.++++++|. -.++++ ..++-.+.|+..|+...++.. .+++|-+++..+
T Consensus 54 adii~i-----Ssl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~g---t~~~~i~~~l~~ 125 (132)
T TIGR00640 54 VHVVGV-----SSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIFGPG---TPIPESAIFLLK 125 (132)
T ss_pred CCEEEE-----cCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEECCC---CCHHHHHHHHHH
Confidence 566665 56778888889999999998754 234555 455567889999998888533 356666666554
Q ss_pred h
Q 005883 667 S 667 (672)
Q Consensus 667 ~ 667 (672)
.
T Consensus 126 ~ 126 (132)
T TIGR00640 126 K 126 (132)
T ss_pred H
Confidence 3
No 72
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=40.84 E-value=6.2e+02 Score=29.16 Aligned_cols=40 Identities=13% Similarity=0.206 Sum_probs=24.2
Q ss_pred ccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEEEEEeCCHhHHHHHHhCCCc
Q 005883 591 LKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQLALVNLVGTVMEKLHQSKTL 645 (672)
Q Consensus 591 ~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~~~v~~~L~~sg~~ 645 (672)
.+++++|-+. +..+++++.|.+.+..++.+ .+.|+++|+.
T Consensus 441 ~~vvvId~d~-------------~~~~~~~~~g~~~i~GD~~~--~~~L~~a~i~ 480 (558)
T PRK10669 441 IPLVVIETSR-------------TRVDELRERGIRAVLGNAAN--EEIMQLAHLD 480 (558)
T ss_pred CCEEEEECCH-------------HHHHHHHHCCCeEEEcCCCC--HHHHHhcCcc
Confidence 5778888541 23455555677777666543 4566666664
No 73
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=40.58 E-value=1.2e+02 Score=30.33 Aligned_cols=32 Identities=9% Similarity=0.325 Sum_probs=22.7
Q ss_pred CCccEEEEEccCCCccchhHHHHHHHHHHHHHh
Q 005883 589 SALKCVILDMTAVTAIDTSGIDAISELKKNMDK 621 (672)
Q Consensus 589 ~~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~ 621 (672)
++++.|+||.... .-|..+.+.+.+..+++++
T Consensus 41 ~~i~~Vvl~~~s~-gg~~~~~~~l~~~l~~~~~ 72 (214)
T cd07022 41 PDVRAIVLDIDSP-GGEVAGVFELADAIRAARA 72 (214)
T ss_pred CCCcEEEEEEeCC-CCcHHHHHHHHHHHHHHhc
Confidence 4689999998664 3466777667666666664
No 74
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=39.89 E-value=76 Score=33.54 Aligned_cols=60 Identities=15% Similarity=0.228 Sum_probs=44.7
Q ss_pred CCccEEEEEccCCCccchhHH----HHHHHHHHHHHhcCCEEEEEe--CCHhHHHHHHhCCCcccc
Q 005883 589 SALKCVILDMTAVTAIDTSGI----DAISELKKNMDKRSLQLALVN--LVGTVMEKLHQSKTLDSF 648 (672)
Q Consensus 589 ~~~~~vILD~s~V~~IDsSgi----~~L~~l~~~l~~~gi~l~la~--~~~~v~~~L~~sg~~~~~ 648 (672)
...+.+++|+.+.-.-|-.-+ ....+..++++++|+.+.++. .++.+.+.|+..|+.+.+
T Consensus 126 ~~~~~i~~D~D~TL~~~~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yF 191 (303)
T PHA03398 126 EIPHVIVFDLDSTLITDEEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYF 191 (303)
T ss_pred eeccEEEEecCCCccCCCCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccc
Confidence 347899999977544443322 446678888999999999884 578899999999987654
No 75
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=39.59 E-value=1.3e+02 Score=29.89 Aligned_cols=58 Identities=17% Similarity=0.272 Sum_probs=39.7
Q ss_pred EEEEEecCceEEechHHHHHHHHHHHhhhhhhhccccCCCccEEEEEccCCCccchhHHHHHHHHHHHHH
Q 005883 551 FLILSIESPIFFANSLYLQERISRWVRGEENRIRENNESALKCVILDMTAVTAIDTSGIDAISELKKNMD 620 (672)
Q Consensus 551 v~Iirl~g~L~F~Na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~ 620 (672)
|.+++++|.+. .+.+++.+.+.+..++ ++++.|+|+... ..-|....+.+.+..++++
T Consensus 2 v~vi~i~g~i~-~s~~~l~~~l~~a~~d----------~~i~~vvl~~~s-~Gg~~~~~~~l~~~i~~~~ 59 (207)
T TIGR00706 2 IAILPVSGAIA-VSPEDFDKKIKRIKDD----------KSIKALLLRINS-PGGTVVASEEIYEKLKKLK 59 (207)
T ss_pred EEEEEEEEEEe-cCHHHHHHHHHHHhhC----------CCccEEEEEecC-CCCCHHHHHHHHHHHHHhc
Confidence 67899999998 6777777777664332 468999998764 3345666555555555554
No 76
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=39.22 E-value=69 Score=30.11 Aligned_cols=57 Identities=12% Similarity=0.055 Sum_probs=38.5
Q ss_pred EEEecCceEEechHHHHHHHHHHHhhhhhhhccccCCCccEEEEEccCCCccchhHHHHHHHHHHHHH
Q 005883 553 ILSIESPIFFANSLYLQERISRWVRGEENRIRENNESALKCVILDMTAVTAIDTSGIDAISELKKNMD 620 (672)
Q Consensus 553 Iirl~g~L~F~Na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~ 620 (672)
+++++|+++-...+++.+.+.++-++ ++.+.|+|+...-. -|.+....+.+..++++
T Consensus 1 vi~i~g~I~~~~~~~l~~~l~~a~~d----------~~~~~ivl~~~s~G-g~~~~~~~i~~~l~~~~ 57 (161)
T cd00394 1 VIFINGVIEDVSADQLAAQIRFAEAD----------NSVKAIVLEVNTPG-GRVDAGMNIVDALQASR 57 (161)
T ss_pred CEEEEeEEccchHHHHHHHHHHHHhC----------CCCceEEEEEECCC-cCHHHHHHHHHHHHHhC
Confidence 47899999998888888888775332 35788999875433 25555555555544444
No 77
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=39.20 E-value=4.5e+02 Score=30.72 Aligned_cols=42 Identities=12% Similarity=0.137 Sum_probs=28.9
Q ss_pred CccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEEEEEeCCHhHHHHHHhCCCcc
Q 005883 590 ALKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQLALVNLVGTVMEKLHQSKTLD 646 (672)
Q Consensus 590 ~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~~~v~~~L~~sg~~~ 646 (672)
+.+++++|-.. +..+++++.|.+++.-++.+ .+.|+.+|+.+
T Consensus 423 g~~vvvID~d~-------------~~v~~~~~~g~~v~~GDat~--~~~L~~agi~~ 464 (601)
T PRK03659 423 KMRITVLERDI-------------SAVNLMRKYGYKVYYGDATQ--LELLRAAGAEK 464 (601)
T ss_pred CCCEEEEECCH-------------HHHHHHHhCCCeEEEeeCCC--HHHHHhcCCcc
Confidence 46899999653 33455666788888777654 46788888754
No 78
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=38.84 E-value=2.2e+02 Score=31.27 Aligned_cols=173 Identities=15% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh---hhcchhh-ccchhHHHHHHHHHHHHHHHHhhhhhhCccccCCCCChHHHHHHHH
Q 005883 190 LYLELAFTSTLFAGLFQASLGIF---RLGFIID-FLSKATLIGFMAGAAVIVSLQQLKGLLGITHFTSDMELIPVLESVF 265 (672)
Q Consensus 190 ~~~~~a~~~t~l~Gv~~~~lG~l---rlg~l~~-~lp~~vi~Gf~~g~gl~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~ 265 (672)
++++.-...|+...++.+++|.+ |+.++-+ .+|+||+.|++..+-.....+-...-++++..
T Consensus 1 ~~~~~n~~~tl~~a~lllllG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~~~~~~~fd~~-------------- 66 (404)
T COG0786 1 MEIHLNALETLILAILLLLLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGFGGVSLNFDTS-------------- 66 (404)
T ss_pred CceehhHHHHHHHHHHHHHHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHHHhcceEEEeCCcc--------------
Q ss_pred hccccchhHHHHHHHHHHHHHHHHHHhhhcCCcccccccchhHHHH---HHHHHHHHHhhCCC------CCeeEeecCCC
Q 005883 266 NSIKEWKWETIVMGFCFLIFLLVARFISTRKPRLFWVSAAAPLTSV---ILSSLLIFLLKSKL------KHVSIIGHLPK 336 (672)
Q Consensus 266 ~~~~~~~~~~~~ig~~~l~~ll~~~~~~~r~~~~~~i~~~~~Li~v---i~~t~is~~~~~~~------~~v~~vg~ip~ 336 (672)
.+-.-.++-..++-+-.-.+.+.|..++..+.-..+..+++ +++..++-..+.|. -.++..|---.
T Consensus 67 -----l~~~fmliFFttiglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~lgidpl~gllagsIsl~GGHGt 141 (404)
T COG0786 67 -----LQDVFMLIFFATIGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLLGLDPLIGLLAGSISLVGGHGT 141 (404)
T ss_pred -----cccHHHHHHHHHhccccchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHhcceeecCCCch
Q ss_pred C------CCCCCCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh----cCCcccCCChh
Q 005883 337 G------VNPTSENKLYFHGPHLQLAIKTGIITGILSLTEGIAVGRTFAS----LHNYQVDGNKE 391 (672)
Q Consensus 337 g------lp~p~~p~~~~~~~~~~~~~~~ai~~~iv~l~e~ia~~~~~a~----~~~~~id~nqE 391 (672)
+ +.....+ .+..+++..+-+++.....++--+++ |++.+.++++|
T Consensus 142 aAA~~~~f~~~G~~----------~A~~va~A~ATfGlv~GgliGgpva~~li~k~~l~~~~~~~ 196 (404)
T COG0786 142 AAAWGPTFEDLGAE----------GATEVAMASATFGLVAGGLIGGPVARWLIKKNKLKPDPTKD 196 (404)
T ss_pred HHHHHHHHHhcCCc----------chHHHHHHHHHHHHHHhHhcCcHHHHHHHHhcCCCCCCCCC
No 79
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=37.76 E-value=90 Score=28.40 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=39.1
Q ss_pred HHHHHHhcCCEEEEE-eCCHhHHHHHHhCCCccccCCCccccCHHHHHHHHHh
Q 005883 615 LKKNMDKRSLQLALV-NLVGTVMEKLHQSKTLDSFRSKGLYLTVGEAVDDLSS 666 (672)
Q Consensus 615 l~~~l~~~gi~l~la-~~~~~v~~~L~~sg~~~~~~~~~if~tv~eAv~~~~~ 666 (672)
+.+.+.++|+++++| +..+.-...|+..|+.-..++. .+++||++....
T Consensus 57 ~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~---~~V~e~i~~~~~ 106 (121)
T COG1433 57 IAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG---GTVEEAIKAFLE 106 (121)
T ss_pred HHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC---CCHHHHHHHHhc
Confidence 567788899999988 4688899999999995444433 899999988764
No 80
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=36.82 E-value=1.1e+02 Score=31.55 Aligned_cols=43 Identities=21% Similarity=0.337 Sum_probs=38.4
Q ss_pred CCccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEEEEEeCC
Q 005883 589 SALKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQLALVNLV 632 (672)
Q Consensus 589 ~~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~ 632 (672)
.+.+.++|| ...+.+|..+-..+.++.+++++.|+.+.++.-.
T Consensus 156 ~~p~lllLD-EP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHD 198 (254)
T COG1121 156 QNPDLLLLD-EPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHD 198 (254)
T ss_pred cCCCEEEec-CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 467899999 8899999999999999999999999998887543
No 81
>PHA00736 hypothetical protein
Probab=36.08 E-value=1.6e+02 Score=23.49 Aligned_cols=68 Identities=26% Similarity=0.364 Sum_probs=44.1
Q ss_pred HHHHHHHhCCCchhhhhh-hhhhhhhhhhccCCcccccchhhHHHHHHHHhhhccccCCCchhHHHHHHHHHHHHHHHH
Q 005883 128 GISYAKLANLQPIIGLYS-SFVPPIVYSVLGSSRHIGIGPVSVASLVMGTMLDGEVSHSNKKDLYLELAFTSTLFAGLF 205 (672)
Q Consensus 128 ~~aya~laglpp~~GLys-s~v~~liy~l~Gss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~a~~~t~l~Gv~ 205 (672)
+++.|+-.|+.|+.+..- ...-++-|-.-|.-+.+..|-.+..+++.-..+- .+|.++....+++|.+
T Consensus 4 aislal~tglgpvi~viiil~mmgltykmagkipaii~giastf~lmfmdflp----------lfwgi~vifgliag~v 72 (79)
T PHA00736 4 AISLALQTGLGPVIAIIIILAMMGLTYKMAGKIPAILVGIASTFTLMFMDFLP----------LFWGITVIFGLIAGLV 72 (79)
T ss_pred HHHHHHHcCCccHHHHHHHHHHHhhHHHHhCCccHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHh
Confidence 577788889999877542 2345666777778888888877777666533221 3466655555566654
No 82
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=34.96 E-value=3.3e+02 Score=28.35 Aligned_cols=29 Identities=10% Similarity=0.185 Sum_probs=22.3
Q ss_pred HHhhhcchhhccchhHHHHHHHHHHHHHH
Q 005883 210 GIFRLGFIIDFLSKATLIGFMAGAAVIVS 238 (672)
Q Consensus 210 G~lrlg~l~~~lp~~vi~Gf~~g~gl~i~ 238 (672)
|---...+++.+|+.+..|+..+.|+.=+
T Consensus 162 G~~~v~~il~~iP~~v~~Gl~vaggmLPA 190 (265)
T TIGR00822 162 SQSAVQAMLKAIPEVVTHGLQIAGGIIVV 190 (265)
T ss_pred CHHHHHHHHHHCHHHHHHHHHHHHhhHHH
Confidence 33346788999999999998888777643
No 83
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=34.61 E-value=5.7e+02 Score=28.63 Aligned_cols=35 Identities=11% Similarity=0.050 Sum_probs=21.6
Q ss_pred HHHHHHHhhhcCCcccCCCh----hhhhHhhhhhhhhcc
Q 005883 371 GIAVGRTFASLHNYQVDGNK----EMIAIGFMNIVGCCF 405 (672)
Q Consensus 371 ~ia~~~~~a~~~~~~id~nq----El~a~Gi~Niv~s~f 405 (672)
+.+++|-+...-..+.++++ .|+.-|+.|++=|++
T Consensus 76 ~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs 114 (448)
T COG2271 76 TYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFS 114 (448)
T ss_pred HHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhh
Confidence 45666766555555566654 667777777765443
No 84
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=34.59 E-value=70 Score=34.04 Aligned_cols=59 Identities=22% Similarity=0.320 Sum_probs=40.1
Q ss_pred CccEEEEEccCC-----------CccchhH-HHHHHHHHHHHHhcCCEEEEEe--CCHhHHHHHHh----CCCcccc
Q 005883 590 ALKCVILDMTAV-----------TAIDTSG-IDAISELKKNMDKRSLQLALVN--LVGTVMEKLHQ----SKTLDSF 648 (672)
Q Consensus 590 ~~~~vILD~s~V-----------~~IDsSg-i~~L~~l~~~l~~~gi~l~la~--~~~~v~~~L~~----sg~~~~~ 648 (672)
..|++|+||.+. ..|.... -..+.+..++++++|+.+.+|. ....+.+.|+. .+..+.+
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f 78 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDF 78 (320)
T ss_pred CeEEEEEcCCCCCCCCEEccCCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHe
Confidence 478999999752 2223222 2457888899999999999984 44567778887 5654433
No 85
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=33.72 E-value=1.1e+02 Score=34.60 Aligned_cols=76 Identities=12% Similarity=0.115 Sum_probs=58.8
Q ss_pred CCccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEEEEEeCCHhHHHHHHhCCCccccCCCccccCHHHHHHHHHh
Q 005883 589 SALKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQLALVNLVGTVMEKLHQSKTLDSFRSKGLYLTVGEAVDDLSS 666 (672)
Q Consensus 589 ~~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~~~v~~~L~~sg~~~~~~~~~if~tv~eAv~~~~~ 666 (672)
.+++.|||| +.=.+.|+.|-++|.+...+.+++|+.+++..-++++....++.=+.+ -|.-+.|-..+|-+++...
T Consensus 489 G~P~lvVLD-EPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~-~G~~~~FG~r~eVLa~~~~ 564 (580)
T COG4618 489 GDPFLVVLD-EPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQ-DGRIAAFGPREEVLAKVLR 564 (580)
T ss_pred CCCcEEEec-CCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeec-CChHHhcCCHHHHHHHhcC
Confidence 357899999 567899999999999999999999999999988888765544432221 1334678888888877653
No 86
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=33.03 E-value=1.9e+02 Score=28.95 Aligned_cols=68 Identities=12% Similarity=0.133 Sum_probs=45.7
Q ss_pred EEechHHHHHHHHHHHhhhhhhhccccCCCccEEEEEccCCCccchhH--HHHHHHHHHHHHhcCCEEEEEe
Q 005883 561 FFANSLYLQERISRWVRGEENRIRENNESALKCVILDMTAVTAIDTSG--IDAISELKKNMDKRSLQLALVN 630 (672)
Q Consensus 561 ~F~Na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDsSg--i~~L~~l~~~l~~~gi~l~la~ 630 (672)
.|.++++|.+.+...+.+++...-...-.....+++| .+..+.... .+.|-++.+.+.++|.+++++.
T Consensus 68 ~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iD--Di~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 68 VYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIID--DIQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp EEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEE--TGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred eeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEe--cchhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 3556777777666655442110000112357899999 777776654 6789999999999999999986
No 87
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=32.06 E-value=1.7e+02 Score=24.71 Aligned_cols=70 Identities=11% Similarity=0.173 Sum_probs=46.1
Q ss_pred EEechHHHHHHHHHHHhhhhhhhccccCCCccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEEEEEeC--CHhHHHH
Q 005883 561 FFANSLYLQERISRWVRGEENRIRENNESALKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQLALVNL--VGTVMEK 638 (672)
Q Consensus 561 ~F~Na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~--~~~v~~~ 638 (672)
.+.|.+...+.+.+ .....+++|.. .-|.+|++.+..+++.. .+..+++... .......
T Consensus 28 ~~~~~~~~~~~~~~--------------~~~d~iiid~~---~~~~~~~~~~~~i~~~~--~~~~ii~~t~~~~~~~~~~ 88 (112)
T PF00072_consen 28 TASSGEEALELLKK--------------HPPDLIIIDLE---LPDGDGLELLEQIRQIN--PSIPIIVVTDEDDSDEVQE 88 (112)
T ss_dssp EESSHHHHHHHHHH--------------STESEEEEESS---SSSSBHHHHHHHHHHHT--TTSEEEEEESSTSHHHHHH
T ss_pred EECCHHHHHHHhcc--------------cCceEEEEEee---ecccccccccccccccc--ccccEEEecCCCCHHHHHH
Confidence 45566655555533 24789999954 34468888888886655 5667766553 4456666
Q ss_pred HHhCCCccccC
Q 005883 639 LHQSKTLDSFR 649 (672)
Q Consensus 639 L~~sg~~~~~~ 649 (672)
..++|..+.+.
T Consensus 89 ~~~~g~~~~l~ 99 (112)
T PF00072_consen 89 ALRAGADDYLS 99 (112)
T ss_dssp HHHTTESEEEE
T ss_pred HHHCCCCEEEE
Confidence 66889887764
No 88
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=31.03 E-value=2.2e+02 Score=29.08 Aligned_cols=77 Identities=10% Similarity=0.061 Sum_probs=50.0
Q ss_pred ecCceEEechHHHHHHHHHHHhhhhhhhccccCCCccEEEEEccCCCccchhHH-----H--------------------
Q 005883 556 IESPIFFANSLYLQERISRWVRGEENRIRENNESALKCVILDMTAVTAIDTSGI-----D-------------------- 610 (672)
Q Consensus 556 l~g~L~F~Na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDsSgi-----~-------------------- 610 (672)
-+.++.+-+.+++++.+.. .+.-.|++|+.+. -+||+.. .
T Consensus 42 ~~~~~~~~~~~~~~~~~~~--------------~~p~aViFDlDgT-LlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~ 106 (237)
T TIGR01672 42 EQAPIHWISVAQIENSLEG--------------RPPIAVSFDIDDT-VLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVN 106 (237)
T ss_pred ccCCeeEEEHHHHHHhcCC--------------CCCeEEEEeCCCc-cccCcHHHhCCcccCCHHHhhhhcChHHHHHHH
Confidence 3456778887777776542 1244888888764 5555551 0
Q ss_pred -----------HHHHHHHHHHhcCCEEEEEeCC------HhHHHHHHhCCCccc
Q 005883 611 -----------AISELKKNMDKRSLQLALVNLV------GTVMEKLHQSKTLDS 647 (672)
Q Consensus 611 -----------~L~~l~~~l~~~gi~l~la~~~------~~v~~~L~~sg~~~~ 647 (672)
...++.++++++|+++.++..+ ..+...++..|+.+.
T Consensus 107 ~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~ 160 (237)
T TIGR01672 107 NGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAM 160 (237)
T ss_pred HhcccCCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchh
Confidence 0567778888999999987553 235555666788654
No 89
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=30.07 E-value=1.9e+02 Score=26.23 Aligned_cols=54 Identities=13% Similarity=0.124 Sum_probs=41.3
Q ss_pred chhHHHHHHHHHHHHHhc--CCEEEEEeCCHhHHHHHHhCCCccccCCCccccCHHHHHHHHHh
Q 005883 605 DTSGIDAISELKKNMDKR--SLQLALVNLVGTVMEKLHQSKTLDSFRSKGLYLTVGEAVDDLSS 666 (672)
Q Consensus 605 DsSgi~~L~~l~~~l~~~--gi~l~la~~~~~v~~~L~~sg~~~~~~~~~if~tv~eAv~~~~~ 666 (672)
|..+.+.+..+.++++++ +..+..+-.+..++++|+..|+ -.++++||++.+.+
T Consensus 12 ~~~~~~~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~--------~~p~~~eaL~~l~~ 67 (127)
T cd03412 12 YPTAEKTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGI--------EVDTPEEALAKLAA 67 (127)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCC--------CCCCHHHHHHHHHH
Confidence 336777888888888765 4577777778889999987763 45888999988765
No 90
>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=29.25 E-value=2.1e+02 Score=27.69 Aligned_cols=66 Identities=17% Similarity=0.266 Sum_probs=46.8
Q ss_pred ccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEEEEEeCCHhHHHHHHhCCCcc---cc-CCCccccCHHHHHHH
Q 005883 591 LKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQLALVNLVGTVMEKLHQSKTLD---SF-RSKGLYLTVGEAVDD 663 (672)
Q Consensus 591 ~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~~~v~~~L~~sg~~~---~~-~~~~if~tv~eAv~~ 663 (672)
...+|+|.++++- .-+.++++++++.|.++..+..+ -.++.++.+|+.. .+ |+.-+..+-+|.++.
T Consensus 23 ~~~~i~dy~Gl~~------~ql~~lR~~lr~~g~~lkV~KNt-L~~rAl~~~~~e~l~~~l~Gp~ai~fs~~dp~~~ 92 (175)
T COG0244 23 PSVVIVDYRGLTV------AQLTELRKKLREAGAKLKVVKNT-LLRRALEEAGLEGLDDLLKGPTAIAFSNEDPVAA 92 (175)
T ss_pred CEEEEEEeCCCcH------HHHHHHHHHHHhCCcEEEEEhhH-HHHHHHHhcchhhHHHhccCCeEEEEecCCHHHH
Confidence 4789999998874 56888999999999999888654 3788899988763 33 444343333444443
No 91
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=28.75 E-value=5e+02 Score=29.10 Aligned_cols=94 Identities=14% Similarity=0.138 Sum_probs=49.8
Q ss_pred ecCceEE---echHHHHHHHHHHHhhhhhhhccccCCCccEEEEEccCCCccchhHHHHHHHHHHHHHhc-CCEEEEEeC
Q 005883 556 IESPIFF---ANSLYLQERISRWVRGEENRIRENNESALKCVILDMTAVTAIDTSGIDAISELKKNMDKR-SLQLALVNL 631 (672)
Q Consensus 556 l~g~L~F---~Na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~-gi~l~la~~ 631 (672)
...|+|. .+.+.+++.++...++ +++..|++-+..-..-|. ......+.+..++. +..++.+..
T Consensus 343 ~~NPlDl~~~~~~~~~~~al~~l~~d----------p~vd~Vlv~~~~~~~~~~--~~~a~~l~~~~~~~~~KPvv~~~~ 410 (447)
T TIGR02717 343 IKNPVDVLGDATPERYAKALKTVAED----------ENVDGVVVVLTPTAMTDP--EEVAKGIIEGAKKSNEKPVVAGFM 410 (447)
T ss_pred cCCCEecCCCCCHHHHHHHHHHHHcC----------CCCCEEEEEccCCccCCH--HHHHHHHHHHHHhcCCCcEEEEec
Confidence 4566665 3345555555544432 346666654432122222 12223333333333 556644433
Q ss_pred C----HhHHHHHHhCCCccccCCCccccCHHHHHHHHHhhc
Q 005883 632 V----GTVMEKLHQSKTLDSFRSKGLYLTVGEAVDDLSSSW 668 (672)
Q Consensus 632 ~----~~v~~~L~~sg~~~~~~~~~if~tv~eAv~~~~~~l 668 (672)
. ++.++.|+..|+ -.|.+.++|++++...+
T Consensus 411 gg~~~~~~~~~L~~~Gi-------p~f~~p~~A~~al~~~~ 444 (447)
T TIGR02717 411 GGKSVDPAKRILEENGI-------PNYTFPERAVKALSALY 444 (447)
T ss_pred CCccHHHHHHHHHhCCC-------CccCCHHHHHHHHHHHH
Confidence 2 346677887776 48999999999876543
No 92
>COG3715 ManY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]
Probab=28.61 E-value=3.4e+02 Score=28.17 Aligned_cols=64 Identities=22% Similarity=0.295 Sum_probs=45.2
Q ss_pred cCCChhhhhHhhhhhhhhccCcccccccchhhHHHhhhCCCchhHHHHHHHHHHHHHHHhhhhhh
Q 005883 386 VDGNKEMIAIGFMNIVGCCFSCYVTTGSFSRSAVNYNAGAKTIFSNIVMAATVLVTLLFLMPLFH 450 (672)
Q Consensus 386 id~nqEl~a~Gi~Niv~s~fg~~p~t~s~srSav~~~~G~rT~ls~iv~a~~~ll~ll~l~~l~~ 450 (672)
+-..=||.++|.+|+-| -..-=|.+++.-.++..+.+|..++.+..-.|+-+.....++.-+.+
T Consensus 51 iGatLEL~~LG~~~iGg-avpPD~~~~si~~t~~aI~sg~~~~~~a~~lAiPiA~a~q~l~~~~r 114 (265)
T COG3715 51 IGATLELAALGWANIGG-AVPPDVALASIIGTAFAITSGQGIPEAALALAIPIAVAGQFLTTFVR 114 (265)
T ss_pred HhHHHHHHHHhCcCccc-CCCCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456899999999887 33444567889999999999887666666566655555555554444
No 93
>COG2450 Uncharacterized conserved protein [Function unknown]
Probab=28.55 E-value=1.6e+02 Score=26.79 Aligned_cols=37 Identities=24% Similarity=0.222 Sum_probs=31.8
Q ss_pred cEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEEEE
Q 005883 592 KCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQLAL 628 (672)
Q Consensus 592 ~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~l 628 (672)
..||.|.+++..-|-+-.+.++++++..++.|+.++.
T Consensus 65 NIvIaDit~l~~d~~~~~~V~e~lr~~a~~~ggdi~~ 101 (124)
T COG2450 65 NIVIADITPLERDDDLFERVIEELRDTAEEVGGDIAK 101 (124)
T ss_pred CEEEEEcCCcccChhHHHHHHHHHHHHHHHhCchhhh
Confidence 5899999999998888888999999998888876543
No 94
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=28.09 E-value=1.1e+02 Score=29.63 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=33.2
Q ss_pred EEEEEecCceEEechHHHHHHHHHHHhhhhhhhccccCCCccEEEEEccCCCccchhH
Q 005883 551 FLILSIESPIFFANSLYLQERISRWVRGEENRIRENNESALKCVILDMTAVTAIDTSG 608 (672)
Q Consensus 551 v~Iirl~g~L~F~Na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDsSg 608 (672)
+.+++++|.++....+++++.+++..++ +.+.|++++..-...-.++
T Consensus 1 v~vi~i~g~I~~~~~~~l~~~l~~a~~~-----------~~~~ivl~inspGG~v~~~ 47 (178)
T cd07021 1 VYVIPIEGEIDPGLAAFVERALKEAKEE-----------GADAVVLDIDTPGGRVDSA 47 (178)
T ss_pred CEEEEEeeEECHHHHHHHHHHHHHHHhC-----------CCCeEEEEEECcCCCHHHH
Confidence 3688999999988888888877764432 2678888876655543333
No 95
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=27.77 E-value=2.3e+02 Score=26.99 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=29.2
Q ss_pred CCCCEEEEEecCceEEechHHHHHHHHHHHhhh
Q 005883 547 RVPSFLILSIESPIFFANSLYLQERISRWVRGE 579 (672)
Q Consensus 547 ~~~~v~Iirl~g~L~F~Na~~~~~~i~~~i~~~ 579 (672)
+.|.+.|+.++|.+.-.-.+.+|+.|...+...
T Consensus 96 ~~~r~~VldF~Gdi~A~~v~~LReeisail~~a 128 (155)
T PF08496_consen 96 PKPRLFVLDFKGDIKASEVESLREEISAILSVA 128 (155)
T ss_pred CCCeEEEEecCCCccHHHHHHHHHHHHHHHHhC
Confidence 468899999999999999999999999887654
No 96
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=26.62 E-value=1.3e+02 Score=27.04 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=35.3
Q ss_pred cEEEEEccCCCc-----cchh----HHHHHHHHHHHHHhcCCEEEEEeCCH----------hHHHHHHhCCCc
Q 005883 592 KCVILDMTAVTA-----IDTS----GIDAISELKKNMDKRSLQLALVNLVG----------TVMEKLHQSKTL 645 (672)
Q Consensus 592 ~~vILD~s~V~~-----IDsS----gi~~L~~l~~~l~~~gi~l~la~~~~----------~v~~~L~~sg~~ 645 (672)
|.+++|+.++-- .+.. -..-..++.+.++++|++++++..++ .+.+.++..|+.
T Consensus 1 k~~~~D~dgtL~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~ 73 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPYVDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP 73 (132)
T ss_pred CEEEEeCCCceecCCCCCCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC
Confidence 457777766543 2122 12335667788889999999886644 477778887764
No 97
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=26.33 E-value=1.4e+02 Score=27.37 Aligned_cols=60 Identities=18% Similarity=0.196 Sum_probs=37.6
Q ss_pred CccchhHHHHHHHHHHHHHhcCC-EE-EEEeCC--------HhHHHHHHhCCCccccCCCccccCHHHHHHHH
Q 005883 602 TAIDTSGIDAISELKKNMDKRSL-QL-ALVNLV--------GTVMEKLHQSKTLDSFRSKGLYLTVGEAVDDL 664 (672)
Q Consensus 602 ~~IDsSgi~~L~~l~~~l~~~gi-~l-~la~~~--------~~v~~~L~~sg~~~~~~~~~if~tv~eAv~~~ 664 (672)
+.+=++.+..+.++.+.++++|. .+ ++++-. ++.++.|+..|+...|++.. +.++.++..
T Consensus 57 S~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt---~~~~i~~~l 126 (128)
T cd02072 57 SSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGT---PPEEAIADL 126 (128)
T ss_pred eccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCCEEECcCC---CHHHHHHHH
Confidence 44445666677778888877654 22 344433 33567899999977766443 566666554
No 98
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=26.03 E-value=1.1e+02 Score=31.24 Aligned_cols=68 Identities=19% Similarity=0.221 Sum_probs=46.5
Q ss_pred ccEEEEEccCCCccchhHHHHHHHHHHHHHhcCC-EEEEEeCCHh--HHHHHHhCCCccccCCCccccCHHHHHHHHHh
Q 005883 591 LKCVILDMTAVTAIDTSGIDAISELKKNMDKRSL-QLALVNLVGT--VMEKLHQSKTLDSFRSKGLYLTVGEAVDDLSS 666 (672)
Q Consensus 591 ~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi-~l~la~~~~~--v~~~L~~sg~~~~~~~~~if~tv~eAv~~~~~ 666 (672)
++.|..+-+.=.+|-+.+ +.++.-|. +++|++|+.. -.-.-..+|-.+.+.+..+|+|++||++.|.-
T Consensus 5 i~iVLVep~~~gNIG~vA--------RaMKNfGl~eL~LV~Pr~~~~eeA~a~A~gA~dile~A~i~~tL~eAl~d~~~ 75 (242)
T COG0565 5 IRIVLVEPSHPGNIGSVA--------RAMKNFGLSELRLVNPRAGLDEEARALAAGARDILENAKIVDTLEEALADCDL 75 (242)
T ss_pred cEEEEEcCCCCccHHHHH--------HHHHhCCcceEEEECCCCCCCHHHHHHhccchhhhccCeeecCHHHHhcCCCE
Confidence 455555555555555444 56666665 7999999874 33333445666778888999999999998754
No 99
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=25.94 E-value=1.4e+02 Score=26.12 Aligned_cols=42 Identities=14% Similarity=0.221 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhhhcCCcccccccchhHHHHHHHHHHHH
Q 005883 278 MGFCFLIFLLVARFISTRKPRLFWVSAAAPLTSVILSSLLIF 319 (672)
Q Consensus 278 ig~~~l~~ll~~~~~~~r~~~~~~i~~~~~Li~vi~~t~is~ 319 (672)
+.+.+++.+++.+++.++++...+...+..++++++|..-+|
T Consensus 52 ~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~n~w 93 (100)
T TIGR02230 52 VAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCLNAW 93 (100)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 334445556667788888875433332334445555544444
No 100
>COG4129 Predicted membrane protein [Function unknown]
Probab=25.50 E-value=2.1e+02 Score=30.86 Aligned_cols=51 Identities=18% Similarity=0.219 Sum_probs=32.3
Q ss_pred hhCCCchhHHHHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHhccCCHHHHHHHh
Q 005883 422 NAGAKTIFSNIVMAATVLVTLLFLMPLFHYTPDFVLAAIIITAVVGLVDYKAALRLW 478 (672)
Q Consensus 422 ~~G~rT~ls~iv~a~~~ll~ll~l~~l~~~iP~~vLaaiii~~~~~li~~~~~~~l~ 478 (672)
+.|.||=.+++-+++.++++- ++ -.|.++.|+|.-+..+.--..+.++..|
T Consensus 8 ~ig~RtlKt~ia~~La~~ia~-~l-----~~~~~~~A~i~AV~~l~~t~~~s~~~~~ 58 (332)
T COG4129 8 KIGARTLKTGLAAGLALLIAH-LL-----GLPQPAFAGISAVLCLSPTIKRSLKRAL 58 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-Hh-----CCCchHHHHHHHhhcccCcchHHHHHHH
Confidence 367788888888877777666 22 3567777777666544444444454444
No 101
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=25.30 E-value=2.9e+02 Score=31.21 Aligned_cols=75 Identities=15% Similarity=0.249 Sum_probs=43.7
Q ss_pred hhhhhhhhhhhhhhhccCCcccccchhhHHHHHHHHhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHh-hhcchhh
Q 005883 141 IGLYSSFVPPIVYSVLGSSRHIGIGPVSVASLVMGTMLDGEVSHSNKKDLYLELAFTSTLFAGLFQASLGIF-RLGFIID 219 (672)
Q Consensus 141 ~GLyss~v~~liy~l~Gss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~a~~~t~l~Gv~~~~lG~l-rlg~l~~ 219 (672)
-|+-.-.+++++-++||+.--...-...+- +++ +.+.++ . -+.=++|.+++++|++ |+|-+..
T Consensus 309 Rgi~~eGig~lL~gl~G~gtG~Tt~~ENig--ll~--vTKVgS-----R-------rvvQ~aa~fmI~~~i~gKFgA~fA 372 (510)
T KOG1292|consen 309 RGIGWEGIGSLLAGLFGTGTGSTTSVENIG--LLG--VTKVGS-----R-------RVVQIAAGFMIFFGIFGKFGAFFA 372 (510)
T ss_pred hhhhhhhHHHHHHHhhCCCccceeecccee--eEe--eeeeee-----e-------eehhhhHHHHHHHHHHHHHHHHHH
Confidence 456666789999999997532211111100 000 011110 0 0223457788888887 5899999
Q ss_pred ccchhHHHHHHH
Q 005883 220 FLSKATLIGFMA 231 (672)
Q Consensus 220 ~lp~~vi~Gf~~ 231 (672)
-||+|++.|..+
T Consensus 373 sIP~piv~~l~c 384 (510)
T KOG1292|consen 373 SIPDPIVGGLLC 384 (510)
T ss_pred cCcHHHHHHHHH
Confidence 999999999443
No 102
>PRK04596 minC septum formation inhibitor; Reviewed
Probab=25.13 E-value=3.1e+02 Score=28.18 Aligned_cols=75 Identities=12% Similarity=0.032 Sum_probs=48.0
Q ss_pred echHHHHHHHHHHHhhhhhhhccccCCCccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEEE-EEeCCHhHHHHHHh
Q 005883 563 ANSLYLQERISRWVRGEENRIRENNESALKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQLA-LVNLVGTVMEKLHQ 641 (672)
Q Consensus 563 ~Na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~-la~~~~~v~~~L~~ 641 (672)
.+-+.+.+.+.+.+++.++ -=.-..||||++.+..-.. . .-|..+.+.++++|...+ +.+.+++.++.-..
T Consensus 28 ~d~~~l~~~L~~ki~~aP~------FF~~~PvVlDl~~l~~~~~-~-~dl~~L~~~Lr~~gl~~vGV~g~~~~~~~~a~~ 99 (248)
T PRK04596 28 LDVPRLVQEMRERVTRAPK------LFGRAAVILDFGGLSQVPD-L-ATAKALLDGLRSAGVLPVALAYGTSEIDLLSQQ 99 (248)
T ss_pred CCHHHHHHHHHHHHHhChH------hhCCCcEEEEchhhcCccc-c-ccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence 4567777777776654321 1135679999999863110 1 126668888889998765 55667766666666
Q ss_pred CCCc
Q 005883 642 SKTL 645 (672)
Q Consensus 642 sg~~ 645 (672)
.|+.
T Consensus 100 ~gL~ 103 (248)
T PRK04596 100 LGLP 103 (248)
T ss_pred CCCC
Confidence 6764
No 103
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=25.04 E-value=1.2e+02 Score=30.64 Aligned_cols=71 Identities=13% Similarity=0.118 Sum_probs=45.8
Q ss_pred EEEEccCCCccchhHHHHHHHHHHHHHhcCCEEEEEe-----CCHhHHHHHHh-CCCccccCCCccccCHHHHHHHHHh
Q 005883 594 VILDMTAVTAIDTSGIDAISELKKNMDKRSLQLALVN-----LVGTVMEKLHQ-SKTLDSFRSKGLYLTVGEAVDDLSS 666 (672)
Q Consensus 594 vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~-----~~~~v~~~L~~-sg~~~~~~~~~if~tv~eAv~~~~~ 666 (672)
+++|+.++-.-+..-+.-=.+..+.++++|+++.+.. ...+..++|.. .|+. +..+.++.+-..+.++.++
T Consensus 1 ~lfD~DGvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~--~~~~~iits~~~~~~~l~~ 77 (236)
T TIGR01460 1 FLFDIDGVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVD--VSPDQIITSGSVTKDLLRQ 77 (236)
T ss_pred CEEeCcCccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCC--CCHHHeeeHHHHHHHHHHH
Confidence 4677777665544433334566677788899998873 23456677877 5662 4456777777777776654
No 104
>COG1296 AzlC Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]
Probab=25.01 E-value=1e+02 Score=31.44 Aligned_cols=51 Identities=29% Similarity=0.534 Sum_probs=38.6
Q ss_pred hhhhHhhHHHHHHHHHHHHhhHHHHHHHh---CCCchhhhhhhhhhhhhhhhccCCccc
Q 005883 107 LSLFRSDLIAGLTIASLAIPQGISYAKLA---NLQPIIGLYSSFVPPIVYSVLGSSRHI 162 (672)
Q Consensus 107 ~~~l~~D~~aGltv~~~~iPq~~aya~la---glpp~~GLyss~v~~liy~l~Gss~~~ 162 (672)
.+.+++.+.+++-+.+-.+|-|++|+.++ |+++ +++.+...++|+ |+|..+
T Consensus 9 ~~~f~~G~~~~~Pi~lg~ip~Gl~fG~~a~~~G~s~---~e~~lmS~~iyA--GasQfv 62 (238)
T COG1296 9 RAEFRQGLKASLPILLGYLPIGLAFGLLAVALGFSP---LEAILMSLLIYA--GASQFV 62 (238)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHcCCcH---HHHHHHHHHHHc--cHHHHH
Confidence 45689999999999999999999999986 5555 455566677776 455443
No 105
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=24.85 E-value=8.4e+02 Score=25.78 Aligned_cols=27 Identities=4% Similarity=0.299 Sum_probs=21.4
Q ss_pred EEEecCceEEechHHHHHHHHHHHhhh
Q 005883 553 ILSIESPIFFANSLYLQERISRWVRGE 579 (672)
Q Consensus 553 Iirl~g~L~F~Na~~~~~~i~~~i~~~ 579 (672)
.+.+++.+...++..+.+++++.+.++
T Consensus 250 ~i~v~~~ls~~eah~I~~~ie~~i~~~ 276 (304)
T COG0053 250 HIEVDPDLSLEEAHEIADEVEKRIKKE 276 (304)
T ss_pred EEEECCCCChHHHHHHHHHHHHHHHHh
Confidence 455677888889999999998877655
No 106
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=24.54 E-value=1.4e+02 Score=33.07 Aligned_cols=39 Identities=15% Similarity=0.389 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHh---hhcchhh-ccchhHHHHHHHHHHHHHH
Q 005883 200 LFAGLFQASLGIF---RLGFIID-FLSKATLIGFMAGAAVIVS 238 (672)
Q Consensus 200 ~l~Gv~~~~lG~l---rlg~l~~-~lp~~vi~Gf~~g~gl~i~ 238 (672)
+...++.+++|.+ |+.++-+ ++|.||+.|++.++.+.+.
T Consensus 9 ~~la~~lLllG~~Lr~kv~~Lqk~~IPapViGGll~al~l~l~ 51 (398)
T TIGR00210 9 LVVAILVLLLGRYLVKKIKFLKSFNIPEPVVGGVLVALALLLI 51 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 3334455666644 4677754 8999999999998777664
No 107
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=23.39 E-value=84 Score=27.88 Aligned_cols=41 Identities=10% Similarity=0.208 Sum_probs=28.0
Q ss_pred cEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEEEEEeCCHhHHH
Q 005883 592 KCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQLALVNLVGTVME 637 (672)
Q Consensus 592 ~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~~~v~~ 637 (672)
..+|+| ....++ .-+.+..+...+++.++++++++.+ +.++
T Consensus 89 ~~lviD--e~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~-~l~~ 129 (131)
T PF13401_consen 89 VLLVID--EADHLF--SDEFLEFLRSLLNESNIKVVLVGTP-ELEK 129 (131)
T ss_dssp EEEEEE--TTHHHH--THHHHHHHHHHTCSCBEEEEEEESS-TTTT
T ss_pred eEEEEe--ChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh-hhHh
Confidence 678888 777773 1455666655556789999999876 4443
No 108
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=23.18 E-value=1.6e+02 Score=27.06 Aligned_cols=58 Identities=17% Similarity=0.236 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHH------hcCCEEEEEeCC---HhHHHHH---HhCCCcccc--CCCccccCHHHHHHHH
Q 005883 607 SGIDAISELKKNMD------KRSLQLALVNLV---GTVMEKL---HQSKTLDSF--RSKGLYLTVGEAVDDL 664 (672)
Q Consensus 607 Sgi~~L~~l~~~l~------~~gi~l~la~~~---~~v~~~L---~~sg~~~~~--~~~~if~tv~eAv~~~ 664 (672)
-|+++|.|+...+. ...+.+++.|.+ .+..+.+ ...|+.+.- ..-.+.+|.+||+++.
T Consensus 62 GG~GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 62 GGIGTLDELFEALTLMQLGRHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVDDPEEALEYI 133 (133)
T ss_dssp -SHHHHHHHHHHHHHHHTTSSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEESSHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHhhccccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeCCHHHHHhhC
Confidence 57899999988876 234499999976 3444444 456776432 2236779999999863
No 109
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=23.14 E-value=1.9e+02 Score=24.03 Aligned_cols=48 Identities=8% Similarity=0.064 Sum_probs=36.1
Q ss_pred HHHHHHhcCCEEEEEe-CCHhHHHHHHhCCCccccCCCccccCHHHHHHHHH
Q 005883 615 LKKNMDKRSLQLALVN-LVGTVMEKLHQSKTLDSFRSKGLYLTVGEAVDDLS 665 (672)
Q Consensus 615 l~~~l~~~gi~l~la~-~~~~v~~~L~~sg~~~~~~~~~if~tv~eAv~~~~ 665 (672)
+.+.+.++|+++++++ ..+...+.|+..|+.-... .-.+++||++...
T Consensus 45 ~~~~l~~~~v~~li~~~iG~~~~~~L~~~gI~v~~~---~~~~i~~~l~~~~ 93 (94)
T PF02579_consen 45 IAKFLAEEGVDVLICGGIGEGAFRALKEAGIKVYQG---AGGDIEEALEAYL 93 (94)
T ss_dssp HHHHHHHTTESEEEESCSCHHHHHHHHHTTSEEEES---TSSBHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeCCCHHHHHHHHHCCCEEEEc---CCCCHHHHHHHHh
Confidence 4555666899999985 6889999999999843332 4578999998764
No 110
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=23.07 E-value=9.1e+02 Score=27.04 Aligned_cols=78 Identities=22% Similarity=0.198 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHhccCCHHHHHHHhhcCchhhhHHHhhhhhhhhhhhhhhHHHHHH
Q 005883 430 SNIVMAATVLVTLLFLMPLFHYTPDFVLAAIIITAVVGLVDYKAALRLWKLDKLDFVACCCSFFGVLFISVQIGLAIAVG 509 (672)
Q Consensus 430 s~iv~a~~~ll~ll~l~~l~~~iP~~vLaaiii~~~~~li~~~~~~~l~k~~~~d~~v~~~t~~~~~~~~v~~Gl~~gv~ 509 (672)
++.+.++++.+.+++.+-+=...|+..+..|.-....... +-.-...-.. ...++.-.++..+.+|++++++
T Consensus 136 ~saV~av~l~~~i~~~~~lRa~~p~~~~~~I~~~I~~~i~-------~t~g~~~p~~-~~~~l~~~ll~P~~ig~ai~~~ 207 (459)
T PF10337_consen 136 ASAVFAVFLFVFIYFHGWLRAKNPKLNFPVIFGSIFVDIF-------LTYGPLFPTF-FAYTLGKTLLKPFLIGIAIALV 207 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH-------HHhCcCcCcc-hHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777666666668887544443332222211 0000000111 2234455666777888888888
Q ss_pred HHHHHH
Q 005883 510 VSVFKI 515 (672)
Q Consensus 510 ~sl~~~ 515 (672)
++++.+
T Consensus 208 vslliF 213 (459)
T PF10337_consen 208 VSLLIF 213 (459)
T ss_pred Hheeec
Confidence 888765
No 111
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=23.05 E-value=1.2e+03 Score=27.58 Aligned_cols=121 Identities=19% Similarity=0.244 Sum_probs=65.7
Q ss_pred ccccccCCChhh--hHhh-HHHHHHHHHHHHhhHHHHHHH-h-----CCCchhhhhhhhhhhhhhhhccCCcccccchhh
Q 005883 98 ILRWAPHYSLSL--FRSD-LIAGLTIASLAIPQGISYAKL-A-----NLQPIIGLYSSFVPPIVYSVLGSSRHIGIGPVS 168 (672)
Q Consensus 98 i~~wl~~Y~~~~--l~~D-~~aGltv~~~~iPq~~aya~l-a-----glpp~~GLyss~v~~liy~l~Gss~~~~~Gp~a 168 (672)
+-+|+|.++.-. +..+ .-.++.++++.+=..|+-+.. | .+++--=|++-.+..++-++|+.-+. .|..+
T Consensus 311 i~~g~~~~~lp~~~~~~~~~~~~~~i~iva~~~~iai~k~fa~~~~y~vd~nqELiAlG~~Ni~sSff~~~p~--tgs~s 388 (665)
T KOG0236|consen 311 IPRGFPPPSLPPLSLTPQVIPDAFAIAIVALLEHIAIGKSFASLHGYKVDSNQELIALGISNILSSFFGCYPT--TGSFS 388 (665)
T ss_pred CCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeCCChHHHHHHHHHHhhhhhceEcc--cchhh
Confidence 446777776553 2233 233666666666666666653 2 24555557788888888888864322 22222
Q ss_pred HHHHHHHHhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhccchhHHHHHHHHHHHH
Q 005883 169 VASLVMGTMLDGEVSHSNKKDLYLELAFTSTLFAGLFQASLGIFRLGFIIDFLSKATLIGFMAGAAVI 236 (672)
Q Consensus 169 ~~sl~~~~~v~~~~~~~~~~~~~~~~a~~~t~l~Gv~~~~lG~lrlg~l~~~lp~~vi~Gf~~g~gl~ 236 (672)
= +.+..... .. .++ ..+++|++ .++.+.-++.+..|+|..++...+-.++..
T Consensus 389 R------Sav~~~sG-~~-----T~~---s~i~~~~~-vl~~l~~l~p~f~~iP~~vLaaIIi~a~~~ 440 (665)
T KOG0236|consen 389 R------SAVNIKSG-GR-----TQV---AGIVSAAL-VLLALLFLGPLFYYIPKCVLAAIIISALIG 440 (665)
T ss_pred H------HHHHhhcC-Cc-----chH---HHHHHHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHhhH
Confidence 1 11211110 01 111 22333333 233334478899999999999977666554
No 112
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=22.89 E-value=1.5e+02 Score=29.27 Aligned_cols=57 Identities=14% Similarity=0.191 Sum_probs=42.6
Q ss_pred hhchHHHHHHHHHHHHhccC-CHHHHHHHhhcCchhhhHHHhhhhhhhhhhhhhhHHH
Q 005883 450 HYTPDFVLAAIIITAVVGLV-DYKAALRLWKLDKLDFVACCCSFFGVLFISVQIGLAI 506 (672)
Q Consensus 450 ~~iP~~vLaaiii~~~~~li-~~~~~~~l~k~~~~d~~v~~~t~~~~~~~~v~~Gl~~ 506 (672)
..+...+|-..+..+++++= +...++++++.++.-..+-+.+.++++..+...+...
T Consensus 23 ~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ll 80 (191)
T PF03956_consen 23 DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLLL 80 (191)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45777788888999899985 6677889999999888887777777666555444433
No 113
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=22.69 E-value=5.1e+02 Score=26.22 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=10.3
Q ss_pred hhhhhHHHHHHHHHHH
Q 005883 499 SVQIGLAIAVGVSVFK 514 (672)
Q Consensus 499 ~v~~Gl~~gv~~sl~~ 514 (672)
+.+.|..+|+.+.+..
T Consensus 130 ~~~ig~~~g~if~i~i 145 (224)
T PF09930_consen 130 GWEIGLVLGLIFFILI 145 (224)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566777777665554
No 114
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=22.65 E-value=2.3e+02 Score=25.29 Aligned_cols=48 Identities=13% Similarity=0.045 Sum_probs=36.9
Q ss_pred cCCEEEEEe-CCHhHHHHHHhCCCccccCCCccccCHHHHHHHHHhhcccC
Q 005883 622 RSLQLALVN-LVGTVMEKLHQSKTLDSFRSKGLYLTVGEAVDDLSSSWKHW 671 (672)
Q Consensus 622 ~gi~l~la~-~~~~v~~~L~~sg~~~~~~~~~if~tv~eAv~~~~~~l~~~ 671 (672)
+|+++++|+ ..+...+.|+..|+.-... .--.+++||++..+..|+..
T Consensus 62 ~~c~vvi~~~IG~~a~~~L~~~gI~~~~~--~~~~~v~eal~~l~~~~~~~ 110 (119)
T TIGR02663 62 KDCAILYCLAIGGPAAAKVVAAKIHPIKV--NEPESISELLERLQKMLKGN 110 (119)
T ss_pred CCCcEEEEhhcCccHHHHHHHcCCeeEec--CCCccHHHHHHHHHHHHcCC
Confidence 699999985 5888899999999854322 12357999999999988743
No 115
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=22.41 E-value=2.7e+02 Score=22.01 Aligned_cols=17 Identities=12% Similarity=0.317 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHhh
Q 005883 306 APLTSVILSSLLIFLLK 322 (672)
Q Consensus 306 ~~Li~vi~~t~is~~~~ 322 (672)
+.-|++++|.+++|+.+
T Consensus 41 GSAIAI~lGLvLAy~GG 57 (60)
T PF03818_consen 41 GSAIAIVLGLVLAYIGG 57 (60)
T ss_pred hHHHHHHHHHHHHHHcc
Confidence 77899999999999865
No 116
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=22.29 E-value=71 Score=29.87 Aligned_cols=17 Identities=12% Similarity=0.208 Sum_probs=11.1
Q ss_pred ccccccchhHHHHHHHH
Q 005883 299 LFWVSAAAPLTSVILSS 315 (672)
Q Consensus 299 ~~~i~~~~~Li~vi~~t 315 (672)
.+.+|.|++++++++-.
T Consensus 29 ll~lPiPGsViGMlLL~ 45 (141)
T PRK04125 29 FLPIPMPASVIGLVLLF 45 (141)
T ss_pred HcCCCCcHHHHHHHHHH
Confidence 34467778888876543
No 117
>PF04206 MtrE: Tetrahydromethanopterin S-methyltransferase, subunit E ; InterPro: IPR005780 This model describes N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0006814 sodium ion transport, 0005737 cytoplasm, 0012506 vesicle membrane
Probab=22.26 E-value=5.7e+02 Score=26.05 Aligned_cols=43 Identities=14% Similarity=0.436 Sum_probs=27.8
Q ss_pred HhCCCchhhhhhhhhhhhhhhhccCCcccccchhhHHHHHHHHhhhcc
Q 005883 134 LANLQPIIGLYSSFVPPIVYSVLGSSRHIGIGPVSVASLVMGTMLDGE 181 (672)
Q Consensus 134 laglpp~~GLyss~v~~liy~l~Gss~~~~~Gp~a~~sl~~~~~v~~~ 181 (672)
++|=||.||||.+.-+.+-|+++.. .+-..++++.+++.+..+
T Consensus 51 iSGEP~aygl~~ai~g~iA~~lm~~-----~~~~~i~ai~~Ga~vAa~ 93 (269)
T PF04206_consen 51 ISGEPPAYGLWCAIAGAIAWALMSA-----FGLNPILAIAIGAAVAAL 93 (269)
T ss_pred ccCCCchhhHHHHHHHHHHHHHHHH-----cCccHHHHHHHHHHHHHH
Confidence 4778888888888888888887721 222355666666555443
No 118
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=22.26 E-value=5.4e+02 Score=22.55 Aligned_cols=65 Identities=14% Similarity=0.124 Sum_probs=40.7
Q ss_pred CccEEEEEccCCCccchhHHHHHHHHHHHHHhc---CCEEEEEeCCHhH-HHHHHhCCCccccCCCccccCHHHHHHHHH
Q 005883 590 ALKCVILDMTAVTAIDTSGIDAISELKKNMDKR---SLQLALVNLVGTV-MEKLHQSKTLDSFRSKGLYLTVGEAVDDLS 665 (672)
Q Consensus 590 ~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~---gi~l~la~~~~~v-~~~L~~sg~~~~~~~~~if~tv~eAv~~~~ 665 (672)
+.+.|.+-++ +......+.++.++++++ ++.+++.+..... .+.++..|++ .++.+-.+|++.+.
T Consensus 50 ~pdvV~iS~~-----~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~~~G~D------~~~~~~~~~~~~~~ 118 (119)
T cd02067 50 DADAIGLSGL-----LTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIGVD------AYFGPATEAVEVLK 118 (119)
T ss_pred CCCEEEEecc-----ccccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhHHHHHHcCCe------EEECCHHHHHHHHh
Confidence 3677877554 344446667777777765 5667777654432 3467777763 35667778887764
No 119
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=22.03 E-value=1.7e+02 Score=27.98 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=39.8
Q ss_pred CccEEEEEccCCCccchhHH-------------HHHHHHHHHHHhcCCEEEEEeCCHh--------------HHHHHHhC
Q 005883 590 ALKCVILDMTAVTAIDTSGI-------------DAISELKKNMDKRSLQLALVNLVGT--------------VMEKLHQS 642 (672)
Q Consensus 590 ~~~~vILD~s~V~~IDsSgi-------------~~L~~l~~~l~~~gi~l~la~~~~~--------------v~~~L~~s 642 (672)
..|.+++|+.++-..+.+.. .-..++.+.++++|.++.++..++. +.+.|+..
T Consensus 12 ~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~ 91 (166)
T TIGR01664 12 QSKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKL 91 (166)
T ss_pred cCcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHc
Confidence 46889999999765533221 2367778888999999998865443 46778888
Q ss_pred CCc
Q 005883 643 KTL 645 (672)
Q Consensus 643 g~~ 645 (672)
|+.
T Consensus 92 gl~ 94 (166)
T TIGR01664 92 KVP 94 (166)
T ss_pred CCC
Confidence 864
No 120
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=22.02 E-value=1.7e+02 Score=32.49 Aligned_cols=69 Identities=14% Similarity=0.165 Sum_probs=50.4
Q ss_pred CCEEEEEecCceEEechHHHHHHHHHHHhhhhhhhccccCCCccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEEE-
Q 005883 549 PSFLILSIESPIFFANSLYLQERISRWVRGEENRIRENNESALKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQLA- 627 (672)
Q Consensus 549 ~~v~Iirl~g~L~F~Na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~- 627 (672)
+.+.+++++|.++=+..+++++.+++..++ .-..+|+++..=...+.+. .++.+...+..+.+.
T Consensus 26 ~~v~vi~i~g~I~~~s~~~l~r~l~~A~~~-----------~a~~vvl~ldTPGGl~~sm----~~iv~~i~~s~vPV~~ 90 (436)
T COG1030 26 KKVYVIEIDGAIDPASADYLQRALQSAEEE-----------NAAAVVLELDTPGGLLDSM----RQIVRAILNSPVPVIG 90 (436)
T ss_pred CeEEEEEecCccCHHHHHHHHHHHHHHHhC-----------CCcEEEEEecCCCchHHHH----HHHHHHHHcCCCCEEE
Confidence 578999999999999999999998875443 3578999987766666554 455566666777743
Q ss_pred EEeCC
Q 005883 628 LVNLV 632 (672)
Q Consensus 628 la~~~ 632 (672)
.+.|+
T Consensus 91 yv~p~ 95 (436)
T COG1030 91 YVVPD 95 (436)
T ss_pred EEcCC
Confidence 33443
No 121
>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho
Probab=21.78 E-value=4.1e+02 Score=24.63 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhhhhhhhccccCCCccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEEEEEeCCHhHHHHHHhCCCc
Q 005883 566 LYLQERISRWVRGEENRIRENNESALKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQLALVNLVGTVMEKLHQSKTL 645 (672)
Q Consensus 566 ~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~~~v~~~L~~sg~~ 645 (672)
..+.+++.+++++. ...+++|+++++. .-+.++++++++.|+++.+... .-+++.|+.+++.
T Consensus 4 ~~~v~~l~~~l~~~-----------~~v~v~~~~~l~~------~~~~~lR~~l~~~~~~~~v~KN-tl~~~Al~~t~~~ 65 (155)
T cd00379 4 EELVEELKELLKKY-----------KSVVVVDYRGLTV------AQLTELRKELRESGAKLKVGKN-TLMRRALKGTGFE 65 (155)
T ss_pred HHHHHHHHHHHHhC-----------CEEEEEecCCCcH------HHHHHHHHHHHHcCCEEEEEeh-HHHHHHHcCCCcc
Confidence 44556666666543 5688999887554 4588899999999999988744 4477789988864
Q ss_pred c
Q 005883 646 D 646 (672)
Q Consensus 646 ~ 646 (672)
+
T Consensus 66 ~ 66 (155)
T cd00379 66 E 66 (155)
T ss_pred c
Confidence 3
No 122
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=21.77 E-value=1.2e+03 Score=27.30 Aligned_cols=42 Identities=14% Similarity=0.229 Sum_probs=27.9
Q ss_pred CccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEEEEEeCCHhHHHHHHhCCCcc
Q 005883 590 ALKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQLALVNLVGTVMEKLHQSKTLD 646 (672)
Q Consensus 590 ~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~~~v~~~L~~sg~~~ 646 (672)
..+++++|.+. +..+++++.|.+++.-++.+ .+.|+.+|+.+
T Consensus 423 g~~vvvID~d~-------------~~v~~~~~~g~~v~~GDat~--~~~L~~agi~~ 464 (621)
T PRK03562 423 GVKMTVLDHDP-------------DHIETLRKFGMKVFYGDATR--MDLLESAGAAK 464 (621)
T ss_pred CCCEEEEECCH-------------HHHHHHHhcCCeEEEEeCCC--HHHHHhcCCCc
Confidence 36789999763 33455566788887776654 45777777754
No 123
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=21.49 E-value=7.8e+02 Score=26.84 Aligned_cols=87 Identities=15% Similarity=0.166 Sum_probs=46.7
Q ss_pred echHHHHHHHHHHHhhhhhhhccccCCCccEEEEEcc-CCCccchhHHHHHHHHHHHHHhcCCEEEEEeC---CHhHHHH
Q 005883 563 ANSLYLQERISRWVRGEENRIRENNESALKCVILDMT-AVTAIDTSGIDAISELKKNMDKRSLQLALVNL---VGTVMEK 638 (672)
Q Consensus 563 ~Na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s-~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~---~~~v~~~ 638 (672)
++.+.+++.++...++ +.++.|++.+. +.+..|..+ +.+.+..++.. .+..++.+-. .+..++.
T Consensus 293 a~~~~~~~al~~l~~d----------p~vd~ilv~i~gg~~~~~~va-~~i~~a~~~~~-~~kPvvv~~~g~~~~~~~~~ 360 (386)
T TIGR01016 293 ASAERVREALKLVLSD----------KSVKVVFINIFGGITRCDLVA-KGLVEALKEVG-VNVPVVVRLEGTNVEEGKKI 360 (386)
T ss_pred CCHHHHHHHHHHHHcC----------CCCCEEEEECCCCCCCHHHHH-HHHHHHHHhcC-CCCcEEEEeCCccHHHHHHH
Confidence 3445555555443332 45777876544 333333322 44444444431 1145533322 2346677
Q ss_pred HHhCCCccccCCCccccCHHHHHHHHHh
Q 005883 639 LHQSKTLDSFRSKGLYLTVGEAVDDLSS 666 (672)
Q Consensus 639 L~~sg~~~~~~~~~if~tv~eAv~~~~~ 666 (672)
|+.+|+ + + ..|.+.++|++.+-+
T Consensus 361 L~~~G~-~-i---p~~~~~~~Av~~~~~ 383 (386)
T TIGR01016 361 LAESGL-N-I---IFATSMEEAAEKAVE 383 (386)
T ss_pred HHHcCC-C-c---cccCCHHHHHHHHHH
Confidence 888884 1 1 489999999987653
No 124
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=21.24 E-value=4.9e+02 Score=25.61 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=39.1
Q ss_pred CccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEEEEEeCCHhHH
Q 005883 590 ALKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQLALVNLVGTVM 636 (672)
Q Consensus 590 ~~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~~~v~ 636 (672)
+.+.+++| ...+.+|......+.++.++++++|..++++.-+.+..
T Consensus 167 ~p~llllD-EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~ 212 (224)
T TIGR02324 167 DYPILLLD-EPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVR 212 (224)
T ss_pred CCCEEEEc-CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 36899999 77999999999999999999988888988887665443
No 125
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=21.16 E-value=4.2e+02 Score=24.79 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=37.4
Q ss_pred ccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEEEEEeCCHhHHHHHHhCCCcc
Q 005883 591 LKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQLALVNLVGTVMEKLHQSKTLD 646 (672)
Q Consensus 591 ~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~~~v~~~L~~sg~~~ 646 (672)
...+++|+++++. .-+.++++++++.|.++.+.. +.-+++.++.+++.+
T Consensus 20 ~~v~v~~~~gl~~------~~~~~lR~~lr~~~~~~~V~K-NtL~~~Al~~t~~~~ 68 (157)
T cd05797 20 KSVVVADYRGLTV------AQLTELRKELREAGVKLKVVK-NTLAKRALEGTGFED 68 (157)
T ss_pred CEEEEEecCCCcH------HHHHHHHHHHHHcCCEEEEeh-hHHHHHHHhcCCchh
Confidence 4688999987664 447779999999999987763 444777899888643
No 126
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=20.93 E-value=3.2e+02 Score=26.39 Aligned_cols=44 Identities=20% Similarity=0.191 Sum_probs=38.6
Q ss_pred ccEEEEEccCCCccchhHHHHHHHHHHHHHhcCCEEEEEeCCHhH
Q 005883 591 LKCVILDMTAVTAIDTSGIDAISELKKNMDKRSLQLALVNLVGTV 635 (672)
Q Consensus 591 ~~~vILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~~~v 635 (672)
.+.+++| .....+|....+.+.+..+++.++|..++++.-+.+.
T Consensus 108 p~llLlD-EPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~ 151 (176)
T cd03238 108 GTLFILD-EPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDV 151 (176)
T ss_pred CCEEEEe-CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 7899999 7799999999999999999998889999888776654
No 127
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=20.93 E-value=6.7e+02 Score=26.10 Aligned_cols=28 Identities=7% Similarity=0.099 Sum_probs=20.9
Q ss_pred HHhhhcchhhccchhHHHHHHHHHHHHH
Q 005883 210 GIFRLGFIIDFLSKATLIGFMAGAAVIV 237 (672)
Q Consensus 210 G~lrlg~l~~~lp~~vi~Gf~~g~gl~i 237 (672)
|---...+++.+|..+..|+..+.|+.=
T Consensus 163 G~~~v~~~~~~iP~~v~~GL~vaggmLP 190 (267)
T PRK09757 163 AQGAMQALVKAMPAWLTHGFEVAGGILP 190 (267)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 3334677899999999998877766653
No 128
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=20.92 E-value=2.1e+02 Score=24.32 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=34.5
Q ss_pred HHHHHHhcCCEEEEEe-CCHhHHHHHHhCCCccccCCCccccCHHHHHHHH
Q 005883 615 LKKNMDKRSLQLALVN-LVGTVMEKLHQSKTLDSFRSKGLYLTVGEAVDDL 664 (672)
Q Consensus 615 l~~~l~~~gi~l~la~-~~~~v~~~L~~sg~~~~~~~~~if~tv~eAv~~~ 664 (672)
+.+.+.+.|+++++++ ..+...+.|+..|+.-..+.+ .+++||++..
T Consensus 55 ~~~~l~~~~v~~vi~~~iG~~~~~~l~~~gI~v~~~~~---~~i~~vl~~~ 102 (103)
T cd00851 55 AAEFLADEGVDVVIVGGIGPRALNKLRNAGIKVYKGAE---GTVEEAIEAL 102 (103)
T ss_pred HHHHHHHcCCCEEEeCCCCcCHHHHHHHCCCEEEEcCC---CCHHHHHHhh
Confidence 4555566899999985 578899999999985443332 6889998754
No 129
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=20.11 E-value=7.5e+02 Score=27.25 Aligned_cols=90 Identities=13% Similarity=0.166 Sum_probs=48.4
Q ss_pred echHHHHHHHHHHHhhhhhhhccccCCCccEEEEEcc-CCCccchhHHHHHHHHHHHHHhcCCEEEEEe---CCHhHHHH
Q 005883 563 ANSLYLQERISRWVRGEENRIRENNESALKCVILDMT-AVTAIDTSGIDAISELKKNMDKRSLQLALVN---LVGTVMEK 638 (672)
Q Consensus 563 ~Na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s-~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~---~~~~v~~~ 638 (672)
++.+.+++.++..+++ +.++.|++.+. +.+..|.. .+.+.+..++. +.+..++.+- ..+..++.
T Consensus 293 a~~e~~~~aL~~ll~D----------p~VdaVlv~i~ggi~~~~~v-A~~Ii~a~~~~-~~~kPvvv~l~G~~~e~~~~i 360 (392)
T PRK14046 293 ASPERVAKAFRLVLSD----------RNVKAILVNIFAGINRCDWV-AEGVVQAAREV-GIDVPLVVRLAGTNVEEGRKI 360 (392)
T ss_pred CCHHHHHHHHHHHHcC----------CCCCEEEEEcCCCCCCHHHH-HHHHHHHHHhc-CCCCcEEEEcCCCCHHHHHHH
Confidence 3556666665544433 45778877654 33333332 24444443332 1455663332 22345666
Q ss_pred HHhCCCccccCCCccccCHHHHHHHHHhhcc
Q 005883 639 LHQSKTLDSFRSKGLYLTVGEAVDDLSSSWK 669 (672)
Q Consensus 639 L~~sg~~~~~~~~~if~tv~eAv~~~~~~l~ 669 (672)
|+.+|+. .+ .+.|.+||++.+-+..+
T Consensus 361 L~~~Gip-vf----~~~~~~~a~~~~v~~~~ 386 (392)
T PRK14046 361 LAESGLP-II----TADTLAEAAEKAVEAWK 386 (392)
T ss_pred HHHcCCC-ee----ecCCHHHHHHHHHHHHh
Confidence 8888872 22 46788998887665443
No 130
>PRK12996 ulaA PTS system ascorbate-specific transporter subunit IIC; Reviewed
Probab=20.04 E-value=4.5e+02 Score=29.61 Aligned_cols=108 Identities=18% Similarity=0.259 Sum_probs=64.7
Q ss_pred hhhhhhhhhhhhhhhhcc---CCcccccchhhHHHHHHHHhhhc-cccCCCchhH-------------HHHHHHHHHHHH
Q 005883 140 IIGLYSSFVPPIVYSVLG---SSRHIGIGPVSVASLVMGTMLDG-EVSHSNKKDL-------------YLELAFTSTLFA 202 (672)
Q Consensus 140 ~~GLyss~v~~liy~l~G---ss~~~~~Gp~a~~sl~~~~~v~~-~~~~~~~~~~-------------~~~~a~~~t~l~ 202 (672)
..|+|.++.|.+..-++- .+....+|-+......++..+.+ .++++++.|+ ....+.++.++-
T Consensus 157 ~lG~y~~v~pal~~~~~~kiTg~d~~aiGH~~~~g~~~s~~ig~~~G~k~kstEdiklPk~LsflrD~~vs~ai~M~i~f 236 (463)
T PRK12996 157 ILGLVMAFFPALAQRYMRRITGTDDIAFGHFGTLGYVLSGWIGSLCGKGSRSTEEMNLPKNLSFLRDSSISISLTMMIIY 236 (463)
T ss_pred HHHHHHHHHHHHHhHHHHHhcCCCCeEEEehhhHHHHHHHHHHHHhCCCcCCHHHhcCCccchHhhccHHHHHHHHHHHH
Confidence 368888888888885532 45677888666665555554443 3333333322 122333333333
Q ss_pred HHHHHHHHHhhh----cchhhccchhHHHHHHHHHHHHHHHHhhhhhhC
Q 005883 203 GLFQASLGIFRL----GFIIDFLSKATLIGFMAGAAVIVSLQQLKGLLG 247 (672)
Q Consensus 203 Gv~~~~lG~lrl----g~l~~~lp~~vi~Gf~~g~gl~i~~~ql~~~lG 247 (672)
++..+..|---+ ..=.+|+=.++..|...++|+.++++.++.+++
T Consensus 237 ~i~~l~aG~~~v~~~~s~g~n~~v~~i~q~l~Faagv~Iil~GVRmfl~ 285 (463)
T PRK12996 237 LIMAVSAGREYVEATFSGGQNYLVYAIIMAITFAAGVFIILQGVRLILA 285 (463)
T ss_pred HHHHHHcCHHHHHhhcCCCcceeehHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 333333322111 112578889999999999999999888876654
No 131
>PF14188 DUF4311: Domain of unknown function (DUF4311)
Probab=20.04 E-value=1.8e+02 Score=27.85 Aligned_cols=19 Identities=11% Similarity=0.454 Sum_probs=12.1
Q ss_pred hhhhhhhhhhhhhhhccCC
Q 005883 141 IGLYSSFVPPIVYSVLGSS 159 (672)
Q Consensus 141 ~GLyss~v~~liy~l~Gss 159 (672)
.|+++..++++-+.+||..
T Consensus 147 tG~W~TvlGGla~liMGNA 165 (213)
T PF14188_consen 147 TGFWGTVLGGLAHLIMGNA 165 (213)
T ss_pred cccHHHHhhhHHHHHhcCC
Confidence 4666666666666666653
Done!