Query 005884
Match_columns 672
No_of_seqs 241 out of 2135
Neff 3.9
Searched_HMMs 46136
Date Thu Mar 28 15:10:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005884.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005884hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4246 Predicted DNA-binding 100.0 4.9E-34 1.1E-38 317.9 7.0 215 53-434 611-833 (1194)
2 KOG0027 Calmodulin and related 99.8 3.9E-19 8.5E-24 165.8 13.8 122 546-671 21-148 (151)
3 COG5126 FRQ1 Ca2+-binding prot 99.8 6.9E-19 1.5E-23 169.4 14.5 121 546-670 33-154 (160)
4 KOG0028 Ca2+-binding protein ( 99.7 3.4E-16 7.3E-21 150.7 13.3 123 545-671 45-169 (172)
5 KOG0031 Myosin regulatory ligh 99.6 5.7E-15 1.2E-19 141.7 13.7 120 546-671 45-164 (171)
6 PTZ00184 calmodulin; Provision 99.6 9.1E-14 2E-18 124.3 15.1 124 545-672 23-148 (149)
7 PTZ00183 centrin; Provisional 99.6 1.1E-13 2.3E-18 126.0 14.9 122 546-671 30-153 (158)
8 KOG4246 Predicted DNA-binding 99.5 5.4E-14 1.2E-18 159.1 11.0 204 227-452 752-967 (1194)
9 KOG0030 Myosin essential light 99.5 1.6E-13 3.4E-18 130.1 11.7 120 546-670 24-149 (152)
10 KOG0034 Ca2+/calmodulin-depend 99.2 2.5E-10 5.4E-15 112.9 13.0 123 546-670 47-173 (187)
11 cd05022 S-100A13 S-100A13: S-1 99.0 3.7E-10 8E-15 99.5 7.0 64 604-671 8-74 (89)
12 PF13499 EF-hand_7: EF-hand do 99.0 1.3E-09 2.7E-14 87.9 7.1 62 605-670 1-66 (66)
13 KOG0044 Ca2+ sensor (EF-Hand s 98.9 1.2E-08 2.6E-13 101.7 12.9 121 545-670 39-173 (193)
14 cd05027 S-100B S-100B: S-100B 98.9 5.6E-09 1.2E-13 91.4 7.9 64 604-671 8-78 (88)
15 KOG0037 Ca2+-binding protein, 98.9 3.2E-08 7E-13 99.9 13.7 115 545-670 69-186 (221)
16 cd05031 S-100A10_like S-100A10 98.8 2E-08 4.3E-13 87.6 7.7 64 603-670 7-77 (94)
17 KOG0038 Ca2+-binding kinase in 98.8 3.2E-08 7E-13 95.4 9.0 121 548-670 54-175 (189)
18 cd05025 S-100A1 S-100A1: S-100 98.7 3.7E-08 8.1E-13 85.4 8.2 65 603-671 8-79 (92)
19 KOG0027 Calmodulin and related 98.7 3.3E-08 7E-13 92.7 8.0 65 603-671 7-71 (151)
20 cd05029 S-100A6 S-100A6: S-100 98.7 5E-08 1.1E-12 85.5 7.5 64 604-671 10-78 (88)
21 cd00052 EH Eps15 homology doma 98.7 5.3E-08 1.1E-12 77.6 6.2 59 607-671 2-60 (67)
22 cd05026 S-100Z S-100Z: S-100Z 98.6 8.9E-08 1.9E-12 84.2 8.0 64 604-671 10-80 (93)
23 smart00027 EH Eps15 homology d 98.6 8.5E-08 1.8E-12 83.8 7.6 63 603-671 9-71 (96)
24 cd00213 S-100 S-100: S-100 dom 98.6 1E-07 2.2E-12 81.6 7.0 65 603-671 7-78 (88)
25 KOG0036 Predicted mitochondria 98.6 3.2E-07 6.9E-12 99.8 12.2 117 546-672 27-146 (463)
26 cd00051 EFh EF-hand, calcium b 98.5 4.9E-07 1.1E-11 68.0 7.5 61 606-670 2-62 (63)
27 PLN02964 phosphatidylserine de 98.5 6.9E-07 1.5E-11 102.4 11.3 96 555-651 161-276 (644)
28 PF13833 EF-hand_8: EF-hand do 98.4 6.2E-07 1.3E-11 70.1 6.7 51 617-671 1-52 (54)
29 cd05023 S-100A11 S-100A11: S-1 98.4 1.2E-06 2.7E-11 77.0 7.8 64 604-671 9-79 (89)
30 COG5126 FRQ1 Ca2+-binding prot 98.3 1.7E-06 3.7E-11 84.3 7.6 100 565-670 13-118 (160)
31 PTZ00183 centrin; Provisional 98.2 4.2E-06 9E-11 76.4 8.0 100 566-670 11-116 (158)
32 PTZ00184 calmodulin; Provision 98.2 4.6E-06 9.9E-11 74.8 7.8 88 579-671 23-111 (149)
33 cd05030 calgranulins Calgranul 98.2 4.1E-06 8.9E-11 73.0 6.5 64 604-671 8-78 (88)
34 PF14658 EF-hand_9: EF-hand do 98.1 7.8E-06 1.7E-10 69.4 6.6 59 609-671 3-63 (66)
35 cd00252 SPARC_EC SPARC_EC; ext 98.0 1.5E-05 3.3E-10 73.7 7.4 60 603-670 47-106 (116)
36 KOG0031 Myosin regulatory ligh 98.0 1.5E-05 3.2E-10 77.8 6.9 61 603-671 31-91 (171)
37 KOG0041 Predicted Ca2+-binding 97.9 1.7E-05 3.6E-10 80.2 6.6 65 603-671 98-162 (244)
38 KOG0044 Ca2+ sensor (EF-Hand s 97.9 6.2E-05 1.3E-09 75.4 10.1 114 552-671 11-127 (193)
39 KOG0028 Ca2+-binding protein ( 97.9 3E-05 6.6E-10 75.9 6.7 97 570-671 34-133 (172)
40 PLN02964 phosphatidylserine de 97.7 0.00023 5.1E-09 82.2 12.3 116 548-671 119-242 (644)
41 PF00036 EF-hand_1: EF hand; 97.6 9.1E-05 2E-09 53.2 3.9 29 605-633 1-29 (29)
42 PF13405 EF-hand_6: EF-hand do 97.5 0.0001 2.2E-09 52.6 3.9 30 605-634 1-31 (31)
43 KOG0030 Myosin essential light 97.4 0.00021 4.5E-09 68.9 5.7 70 600-671 7-76 (152)
44 PF13833 EF-hand_8: EF-hand do 97.4 0.00051 1.1E-08 53.7 6.1 47 547-593 2-51 (54)
45 KOG0377 Protein serine/threoni 97.3 0.0012 2.7E-08 73.2 10.4 123 545-671 476-614 (631)
46 KOG0037 Ca2+-binding protein, 97.3 0.0008 1.7E-08 68.7 8.1 72 545-623 136-209 (221)
47 KOG4223 Reticulocalbin, calume 97.2 0.00087 1.9E-08 71.7 7.6 120 545-668 175-301 (325)
48 cd05022 S-100A13 S-100A13: S-1 97.0 0.00093 2E-08 59.3 4.9 49 546-594 22-74 (89)
49 PF13499 EF-hand_7: EF-hand do 97.0 0.002 4.3E-08 51.9 6.1 59 572-630 3-66 (66)
50 cd05027 S-100B S-100B: S-100B 96.9 0.0018 3.8E-08 57.1 5.8 49 546-594 22-78 (88)
51 PF14658 EF-hand_9: EF-hand do 96.9 0.0024 5.2E-08 54.5 5.7 51 545-595 10-64 (66)
52 PF12763 EF-hand_4: Cytoskelet 96.8 0.0049 1.1E-07 56.3 7.4 63 602-671 8-70 (104)
53 cd05024 S-100A10 S-100A10: A s 96.7 0.0063 1.4E-07 54.8 7.3 63 604-671 8-75 (91)
54 cd05029 S-100A6 S-100A6: S-100 96.7 0.0037 8.1E-08 55.0 5.7 48 547-594 26-78 (88)
55 KOG0040 Ca2+-binding actin-bun 96.6 0.014 3E-07 72.1 12.1 118 545-670 2265-2396(2399)
56 cd05031 S-100A10_like S-100A10 96.6 0.0038 8.3E-08 54.6 5.5 47 547-593 24-77 (94)
57 PRK12309 transaldolase/EF-hand 96.6 0.0038 8.2E-08 68.7 6.6 55 600-671 330-384 (391)
58 KOG2643 Ca2+ binding protein, 96.6 0.0016 3.5E-08 72.2 3.6 87 578-670 210-312 (489)
59 KOG0040 Ca2+-binding actin-bun 96.4 0.0043 9.4E-08 76.2 6.1 63 604-670 2253-2322(2399)
60 KOG0036 Predicted mitochondria 96.3 0.011 2.4E-07 65.4 7.7 63 604-670 14-77 (463)
61 cd05025 S-100A1 S-100A1: S-100 96.2 0.011 2.4E-07 51.5 5.9 49 546-594 23-79 (92)
62 cd00052 EH Eps15 homology doma 96.1 0.016 3.4E-07 46.1 6.0 45 547-593 13-59 (67)
63 PF13202 EF-hand_5: EF hand; P 96.0 0.0081 1.8E-07 41.7 3.4 25 606-630 1-25 (25)
64 cd00051 EFh EF-hand, calcium b 96.0 0.035 7.7E-07 41.4 7.2 51 579-630 12-62 (63)
65 PF00036 EF-hand_1: EF hand; 96.0 0.008 1.7E-07 43.2 3.3 27 641-671 1-27 (29)
66 KOG4223 Reticulocalbin, calume 96.0 0.019 4E-07 61.9 7.4 120 547-670 91-226 (325)
67 smart00027 EH Eps15 homology d 96.0 0.036 7.8E-07 48.6 8.0 59 579-640 22-85 (96)
68 cd05030 calgranulins Calgranul 95.7 0.02 4.3E-07 50.1 5.2 49 546-594 23-78 (88)
69 KOG0046 Ca2+-binding actin-bun 95.3 0.039 8.5E-07 62.7 7.0 63 603-670 18-83 (627)
70 KOG0751 Mitochondrial aspartat 95.2 0.08 1.7E-06 60.0 9.2 111 550-670 53-173 (694)
71 cd05026 S-100Z S-100Z: S-100Z 95.2 0.073 1.6E-06 47.0 7.2 56 578-633 22-82 (93)
72 smart00054 EFh EF-hand, calciu 95.2 0.023 5E-07 36.5 3.1 28 606-633 2-29 (29)
73 cd00213 S-100 S-100: S-100 dom 95.2 0.077 1.7E-06 45.4 7.1 55 579-633 22-80 (88)
74 KOG4666 Predicted phosphate ac 94.8 0.036 7.8E-07 60.1 5.0 94 571-670 261-357 (412)
75 KOG0034 Ca2+/calmodulin-depend 94.6 0.59 1.3E-05 47.1 12.5 97 566-671 27-131 (187)
76 PF10591 SPARC_Ca_bdg: Secrete 94.3 0.021 4.6E-07 52.6 1.6 63 600-668 50-112 (113)
77 PF14788 EF-hand_10: EF hand; 93.9 0.15 3.3E-06 41.8 5.6 47 621-671 2-48 (51)
78 cd00252 SPARC_EC SPARC_EC; ext 93.7 0.22 4.8E-06 46.4 7.1 57 569-630 48-106 (116)
79 KOG2643 Ca2+ binding protein, 93.7 0.17 3.7E-06 56.7 7.3 115 547-671 332-452 (489)
80 KOG4065 Uncharacterized conser 93.6 0.25 5.3E-06 47.2 7.2 69 602-670 65-143 (144)
81 cd05023 S-100A11 S-100A11: S-1 93.4 0.43 9.2E-06 42.3 8.1 56 579-634 22-82 (89)
82 KOG2562 Protein phosphatase 2 93.3 0.27 6E-06 55.4 8.1 114 547-668 292-420 (493)
83 KOG0041 Predicted Ca2+-binding 93.1 0.26 5.7E-06 50.7 6.9 87 545-631 111-202 (244)
84 PRK12309 transaldolase/EF-hand 92.5 0.33 7.2E-06 53.8 7.3 57 562-632 327-385 (391)
85 PF13202 EF-hand_5: EF hand; P 92.4 0.16 3.5E-06 35.3 3.1 25 642-670 1-25 (25)
86 PF09279 EF-hand_like: Phospho 92.3 0.33 7.1E-06 41.4 5.6 65 605-670 1-67 (83)
87 PF08726 EFhand_Ca_insen: Ca2+ 92.0 0.052 1.1E-06 46.8 0.3 61 601-669 3-66 (69)
88 KOG1029 Endocytic adaptor prot 89.5 0.34 7.4E-06 57.5 4.0 64 601-670 192-255 (1118)
89 KOG2562 Protein phosphatase 2 89.4 0.76 1.6E-05 52.0 6.5 59 609-670 283-341 (493)
90 KOG4251 Calcium binding protei 89.4 0.22 4.8E-06 52.6 2.2 62 602-667 99-163 (362)
91 cd05024 S-100A10 S-100A10: A s 89.2 1.1 2.4E-05 40.6 6.3 32 602-633 46-77 (91)
92 PF13405 EF-hand_6: EF-hand do 87.4 0.73 1.6E-05 32.8 3.2 27 641-671 1-27 (31)
93 smart00054 EFh EF-hand, calciu 86.9 0.75 1.6E-05 29.2 2.8 26 642-671 2-27 (29)
94 KOG0751 Mitochondrial aspartat 85.5 2 4.3E-05 49.4 6.8 78 583-668 163-240 (694)
95 KOG0035 Ca2+-binding actin-bun 81.9 4.5 9.8E-05 49.2 8.3 83 545-628 759-848 (890)
96 KOG4251 Calcium binding protei 80.6 2.6 5.7E-05 44.8 5.1 92 573-668 240-341 (362)
97 PLN02952 phosphoinositide phos 79.6 8 0.00017 45.5 9.0 90 580-670 13-108 (599)
98 KOG0035 Ca2+-binding actin-bun 77.5 3.6 7.8E-05 50.0 5.6 64 603-670 746-814 (890)
99 PF12763 EF-hand_4: Cytoskelet 77.4 8 0.00017 35.6 6.7 51 580-633 22-72 (104)
100 KOG0042 Glycerol-3-phosphate d 77.4 3.4 7.3E-05 48.2 5.1 63 605-671 594-656 (680)
101 KOG0169 Phosphoinositide-speci 76.0 15 0.00032 44.3 9.8 119 547-670 150-272 (746)
102 PF14788 EF-hand_10: EF hand; 72.3 11 0.00024 31.1 5.6 29 604-632 21-49 (51)
103 KOG2243 Ca2+ release channel ( 71.6 5.5 0.00012 50.3 5.1 56 609-669 4062-4117(5019)
104 KOG0377 Protein serine/threoni 70.2 13 0.00029 42.5 7.3 64 570-633 548-616 (631)
105 KOG3449 60S acidic ribosomal p 69.3 14 0.00031 35.0 6.2 44 606-649 3-46 (112)
106 PF05517 p25-alpha: p25-alpha 68.8 22 0.00048 34.6 7.8 62 606-671 4-68 (154)
107 KOG2871 Uncharacterized conser 67.3 3.7 8E-05 45.8 2.3 64 600-666 305-368 (449)
108 PF09279 EF-hand_like: Phospho 66.0 15 0.00032 31.3 5.3 63 570-632 1-69 (83)
109 KOG1955 Ral-GTPase effector RA 65.6 11 0.00025 43.5 5.8 62 605-672 232-293 (737)
110 cd08316 Death_FAS_TNFRSF6 Deat 56.2 72 0.0016 29.3 8.2 77 549-648 17-94 (97)
111 KOG4578 Uncharacterized conser 56.0 6 0.00013 43.6 1.5 66 600-671 329-397 (421)
112 PF05042 Caleosin: Caleosin re 52.2 1.3E+02 0.0028 30.7 9.9 120 546-670 20-164 (174)
113 PF14513 DAG_kinase_N: Diacylg 49.0 28 0.0006 34.0 4.6 69 547-617 5-82 (138)
114 cd08315 Death_TRAILR_DR4_DR5 D 48.4 1.1E+02 0.0024 27.8 8.1 76 549-648 16-92 (96)
115 KOG1029 Endocytic adaptor prot 45.8 40 0.00087 41.1 6.1 65 602-672 11-77 (1118)
116 KOG3866 DNA-binding protein of 42.5 31 0.00066 38.2 4.2 58 608-669 248-321 (442)
117 KOG3555 Ca2+-binding proteogly 42.2 29 0.00062 38.8 4.0 60 603-670 249-308 (434)
118 KOG4347 GTPase-activating prot 35.6 54 0.0012 39.1 5.1 50 584-633 535-584 (671)
119 KOG0046 Ca2+-binding actin-bun 35.3 54 0.0012 38.5 4.9 49 546-594 31-84 (627)
120 PTZ00373 60S Acidic ribosomal 35.1 1.2E+02 0.0026 28.8 6.3 54 606-668 5-58 (112)
121 KOG4666 Predicted phosphate ac 35.0 80 0.0017 35.3 5.9 109 553-670 209-322 (412)
122 PLN02222 phosphoinositide phos 34.6 1E+02 0.0022 36.6 7.1 65 601-670 22-88 (581)
123 KOG0169 Phosphoinositide-speci 32.9 62 0.0013 39.2 5.1 91 571-670 138-230 (746)
124 PF09068 EF-hand_2: EF hand; 32.8 2.8E+02 0.0061 26.5 8.5 97 573-669 4-122 (127)
125 KOG4065 Uncharacterized conser 31.3 46 0.00099 32.3 3.0 46 547-592 81-142 (144)
126 PF03672 UPF0154: Uncharacteri 30.8 73 0.0016 27.6 3.9 31 548-578 30-60 (64)
127 PF09069 EF-hand_3: EF-hand; 29.3 2.6E+02 0.0056 25.6 7.3 62 603-671 2-74 (90)
128 cd05833 Ribosomal_P2 Ribosomal 26.7 2E+02 0.0043 27.1 6.3 44 606-649 3-46 (109)
129 PRK09430 djlA Dna-J like membr 26.7 6.3E+02 0.014 26.9 10.8 115 548-672 70-208 (267)
130 PF05042 Caleosin: Caleosin re 26.7 52 0.0011 33.5 2.6 34 605-638 8-41 (174)
131 PF09026 CENP-B_dimeris: Centr 26.6 22 0.00047 33.2 0.0 12 550-561 41-52 (101)
132 KOG0998 Synaptic vesicle prote 25.9 28 0.0006 42.7 0.7 61 604-670 283-343 (847)
133 cd04411 Ribosomal_P1_P2_L12p R 24.9 2.6E+02 0.0056 26.1 6.6 29 621-649 17-45 (105)
134 cd00086 homeodomain Homeodomai 24.7 1.9E+02 0.0041 22.4 5.0 39 604-649 13-51 (59)
135 TIGR01848 PHA_reg_PhaR polyhyd 24.3 1.7E+02 0.0037 27.8 5.3 51 611-665 10-70 (107)
136 PF10446 DUF2457: Protein of u 24.0 59 0.0013 37.3 2.7 46 496-541 43-88 (458)
137 PRK00523 hypothetical protein; 23.4 1.2E+02 0.0025 27.1 3.8 31 548-578 38-68 (72)
138 PLN02230 phosphoinositide phos 23.3 2.1E+02 0.0047 34.1 7.1 71 599-670 24-100 (598)
139 PF06648 DUF1160: Protein of u 22.8 1.3E+02 0.0028 29.0 4.4 49 599-650 32-81 (122)
140 cd08784 Death_DRs Death Domain 21.9 3.6E+02 0.0077 23.5 6.6 69 549-641 8-77 (79)
141 PLN02228 Phosphoinositide phos 21.9 2.7E+02 0.0058 33.1 7.5 69 600-670 20-90 (567)
142 PF10591 SPARC_Ca_bdg: Secrete 21.9 98 0.0021 28.8 3.3 55 571-628 56-112 (113)
143 KOG1955 Ral-GTPase effector RA 21.2 2.4E+02 0.0052 33.4 6.7 58 579-639 243-305 (737)
144 KOG1265 Phospholipase C [Lipid 21.0 3.8E+02 0.0082 33.9 8.6 83 584-670 205-297 (1189)
145 PF00046 Homeobox: Homeobox do 20.8 1.9E+02 0.0042 22.7 4.4 41 604-648 10-50 (57)
146 cd08313 Death_TNFR1 Death doma 20.7 3.7E+02 0.0079 24.0 6.5 70 549-641 8-78 (80)
No 1
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=100.00 E-value=4.9e-34 Score=317.91 Aligned_cols=215 Identities=31% Similarity=0.330 Sum_probs=177.0
Q ss_pred cceeccCCcccccccchhhhccccccccccCCCCCcchhhhhhhhheeeeeccCCCCCcccCCCCcccchh-hhhhhhcc
Q 005884 53 KVEKIDGSESGREEKNVEEKDLVETTAAQTAGNAKPGKRKIIRRIVKQKVVDKAAGGENTVGNQNDKLDEK-DAVEKKNA 131 (672)
Q Consensus 53 ~~~k~~~~~~~~~~k~~e~k~~~~~~~~~t~g~~k~~~kkiik~vvk~~v~~~~~~~~~~~~~~~~~~~~k-~~~e~~~~ 131 (672)
.+|+++.++. ++++|+|++|.+.+|||--+.-..-.||||++|.+++....|.+ +.|+| ++++ ..+
T Consensus 611 ~~v~~~~~~~---t~Dae~k~~g~a~~gqtPT~wSkldpK~mKv~~lR~elegral~---------~KG~Ks~l~~-rl~ 677 (1194)
T KOG4246|consen 611 QEVKKDTVEV---TKDAEKKSPGDASGGQTPTTWSKLDPKIMKVVVLRPELEGRALG---------MKGEKSDLPE-RLA 677 (1194)
T ss_pred hhhhhccccc---ccchhhcCCccccCCCCCCcccccCchhhhhhhhhhhhcccccc---------cccchhhHHH-Hhh
Confidence 4788999999 99999999999999554433334449999999999999998777 67777 5688 888
Q ss_pred ccchhh------hhhhhHhhhhhccccccccCCCCCCCccchhhhhcccCCCCCCCCCCCCCcccccCccccchhhhHHH
Q 005884 132 NSEVSA------KTFTRKKVAKKASEENTFQNDNKGIQPEVTAEEKDQADDKPKDDSVPSGTAAVQDTGVRTTIKKKIIK 205 (672)
Q Consensus 132 ~~e~~v------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kt~~kkkii~ 205 (672)
+..+++ .|+.+++|..++.| ..+.++|++..+.+ ++.||+.+|+||+
T Consensus 678 ~~l~te~~~E~t~~~~~~~i~qk~~E--------------------------~~~t~~~s~~k~E~-e~~k~~~~k~~~k 730 (1194)
T KOG4246|consen 678 IPLTTEPKEESTGTSSNKKIVQKVAE--------------------------TGDTSDPSAKKNEQ-EPAKTIVKKKIIK 730 (1194)
T ss_pred cccccchhhhhccchhhHHHHHhhcc--------------------------cCCCccchhhhccc-cchhhHHHHHHHH
Confidence 766653 57888999988887 34678899999888 8999999999999
Q ss_pred HhhhcccccccCccccccccCCCCCcccccccccccccccchhhhcccccCcccccCCCcccccccccCCCccchhcccc
Q 005884 206 RVLKRKVAGRTNNAVVDTKIDGNGDQKSLVQSENKTQDAGTQLADAEKKTSPEMKSKTPGALKLDVVANSSKTEIKVEKD 285 (672)
Q Consensus 206 rv~k~kv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (672)
|+-+|++....++..
T Consensus 731 k~ee~~~~e~~~kr~----------------------------------------------------------------- 745 (1194)
T KOG4246|consen 731 KVEERKVAEIDNKRD----------------------------------------------------------------- 745 (1194)
T ss_pred HHHHHHHHHHHhhhh-----------------------------------------------------------------
Confidence 999887643211110
Q ss_pred ccccCCCCcchhhhhhhccccccccccccCCCCCCCcccCCCCCCCCCCCCCCCCCCChhhhcccCCCCCCCCCceEEee
Q 005884 286 GKKAGMGADVESKTAKEKVSLKDTSIGIRGNSKDGEKSKDEKPKNDKDGKGESRSHSNKEGKEKRKPEEPPRHPGLILQM 365 (672)
Q Consensus 286 ~~~~~~~~~~~~k~~~~k~~~~~~~~~~~~~~k~~~~~kd~k~~k~~~~~~~~~~~~~~e~ke~k~~ee~P~~P~~i~~~ 365 (672)
. -| +--.+|.+|.|||+|
T Consensus 746 ----------------------------------------------~--------------~e--k~y~lpdekkI~v~p 763 (1194)
T KOG4246|consen 746 ----------------------------------------------G--------------DE--KKYGLPDEKKIMVVP 763 (1194)
T ss_pred ----------------------------------------------h--------------hh--hhccCCCCceeEEec
Confidence 0 00 112378999999999
Q ss_pred cCC-CCccccccccchhhhccCCcCCcccceehhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH
Q 005884 366 KSN-KDSKLRSLSLSLDSLLDYTDKDIEESSFELSLFGEMLYEMLQYQMGCRVLEFLQGLRIKFLSERNE 434 (672)
Q Consensus 366 ~~~-k~~k~~~~~~SL~~LLdY~~~D~~E~tFEvSLfaElF~EMLqrd~G~~I~~~L~~l~~k~v~kr~~ 434 (672)
+|+ |+|||+|..+||++|||||..||+||+||||||||+|+||++|+|||+||+.|.+++++...|+|.
T Consensus 764 ~ks~kSGkfdck~~slSsLlDyrhddNke~tfeVslfae~f~em~~r~a~~~iyk~l~t~~dk~aeKk~~ 833 (1194)
T KOG4246|consen 764 KKSSKSGKFDCKPTSLSSLLDYRHDDNKEKTFEVSLFAESFDEMKKRGASSSIYKDLKTGEDKKAEKKNN 833 (1194)
T ss_pred cccccCCcccccchhhhHhhhhhccccccceeeeehhhhhhHHHHhcccchhhHhhhhcCcchhhhhhcc
Confidence 999 999999999999999999999999999999999999999999999999999999999987655443
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.80 E-value=3.9e-19 Score=165.77 Aligned_cols=122 Identities=18% Similarity=0.318 Sum_probs=111.3
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHhhC--CCCccchHHHHHHHHhhcCCCC----hHHHHHHHhhhhcCCCCC
Q 005884 546 KTDANAQSGMESGNEKDKANESNKEKTIMEAAEV--KHSDVDMGKKGERNVETGKKEV----FDKELLQAFRFFDRNQVG 619 (672)
Q Consensus 546 ~sgaI~~sEL~~aLRsLG~epSEeEIeemIsdiD--~dGkIDFdEFLaima~k~k~~d----~eEELreAFkvFDkDgdG 619 (672)
+.|.|+..||..+|+.||++|++.++..|+.+++ ++|.|+|.+|+.+|........ ...+|+.||++||.+++|
T Consensus 21 ~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G 100 (151)
T KOG0027|consen 21 GDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDG 100 (151)
T ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCC
Confidence 3599999999999999999999999999999875 5799999999999876554333 345999999999999999
Q ss_pred ceeHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 620 YIRVEDLRLIIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 620 yIt~dDLKeILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
||+..+|+.+|..+|..++.+++..||..+ |.++||.|+|.+|+.||.
T Consensus 101 ~Is~~el~~~l~~lg~~~~~~e~~~mi~~~----d~d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 101 FISASELKKVLTSLGEKLTDEECKEMIREV----DVDGDGKVNFEEFVKMMS 148 (151)
T ss_pred cCcHHHHHHHHHHhCCcCCHHHHHHHHHhc----CCCCCCeEeHHHHHHHHh
Confidence 999999999999999999999999999999 489999999999999985
No 3
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.80 E-value=6.9e-19 Score=169.41 Aligned_cols=121 Identities=21% Similarity=0.278 Sum_probs=114.8
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHhhC-CCCccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCceeHH
Q 005884 546 KTDANAQSGMESGNEKDKANESNKEKTIMEAAEV-KHSDVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGYIRVE 624 (672)
Q Consensus 546 ~sgaI~~sEL~~aLRsLG~epSEeEIeemIsdiD-~dGkIDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGyIt~d 624 (672)
..|.|+..+|..+||++|+++++.++..|+..++ +.+.|+|.+|+.+|..........++|+.||++||.|++|||+..
T Consensus 33 ~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~ 112 (160)
T COG5126 33 SDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIG 112 (160)
T ss_pred CCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccCCCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHH
Confidence 4799999999999999999999999999999877 478899999999999888778889999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHh
Q 005884 625 DLRLIIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMS 670 (672)
Q Consensus 625 DLKeILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM 670 (672)
+|.++|..||..+++++|+.||..+ +.+++|.|+|.+|+.++
T Consensus 113 eL~~vl~~lge~~~deev~~ll~~~----d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 113 ELRRVLKSLGERLSDEEVEKLLKEY----DEDGDGEIDYEEFKKLI 154 (160)
T ss_pred HHHHHHHhhcccCCHHHHHHHHHhc----CCCCCceEeHHHHHHHH
Confidence 9999999999999999999999999 48999999999999976
No 4
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=3.4e-16 Score=150.73 Aligned_cols=123 Identities=15% Similarity=0.220 Sum_probs=116.0
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHhhCC--CCccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCcee
Q 005884 545 GKTDANAQSGMESGNEKDKANESNKEKTIMEAAEVK--HSDVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGYIR 622 (672)
Q Consensus 545 ~~sgaI~~sEL~~aLRsLG~epSEeEIeemIsdiD~--dGkIDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGyIt 622 (672)
.++|+|+..||+.+|++||+++...+|..||.+++. .|.|+|+.|+.+|+..+...++.++|+.||++||.|++|.|+
T Consensus 45 ~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis 124 (172)
T KOG0028|consen 45 DMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKIS 124 (172)
T ss_pred CCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcC
Confidence 358999999999999999999999999999999875 789999999999988887777999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 623 VEDLRLIIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 623 ~dDLKeILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
..+|++++..||..|+++++.+||.++ +.+++|-|+-++|+.+|.
T Consensus 125 ~~~lkrvakeLgenltD~El~eMIeEA----d~d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 125 QRNLKRVAKELGENLTDEELMEMIEEA----DRDGDGEVNEEEFIRIMK 169 (172)
T ss_pred HHHHHHHHHHhCccccHHHHHHHHHHh----cccccccccHHHHHHHHh
Confidence 999999999999999999999999999 489999999999999884
No 5
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.62 E-value=5.7e-15 Score=141.72 Aligned_cols=120 Identities=15% Similarity=0.159 Sum_probs=113.6
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCceeHHH
Q 005884 546 KTDANAQSGMESGNEKDKANESNKEKTIMEAAEVKHSDVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGYIRVED 625 (672)
Q Consensus 546 ~sgaI~~sEL~~aLRsLG~epSEeEIeemIsdiD~dGkIDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGyIt~dD 625 (672)
+.|.|...+|+..|.+||..+++.+|..||.+ ..|.|+|.-||.++..++...++++.|+.||..||.+++|.|..+.
T Consensus 45 rDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E--a~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~ 122 (171)
T KOG0031|consen 45 RDGFIDKEDLRDMLASLGKIASDEELDAMMKE--APGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDY 122 (171)
T ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh--CCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCccCHHH
Confidence 46899999999999999999999999999995 5689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 626 LRLIIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 626 LKeILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
|+++|.++|.+++.++|+.|+..+. ++..|.|+|..|+.+|.
T Consensus 123 lre~Ltt~gDr~~~eEV~~m~r~~p----~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 123 LRELLTTMGDRFTDEEVDEMYREAP----IDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHhcccCCHHHHHHHHHhCC----cccCCceeHHHHHHHHH
Confidence 9999999999999999999999984 77889999999999873
No 6
>PTZ00184 calmodulin; Provisional
Probab=99.56 E-value=9.1e-14 Score=124.33 Aligned_cols=124 Identities=22% Similarity=0.306 Sum_probs=110.2
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHhhC--CCCccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCcee
Q 005884 545 GKTDANAQSGMESGNEKDKANESNKEKTIMEAAEV--KHSDVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGYIR 622 (672)
Q Consensus 545 ~~sgaI~~sEL~~aLRsLG~epSEeEIeemIsdiD--~dGkIDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGyIt 622 (672)
.++|.|+..||..+|..+|..++...+..|+..++ ++|.|+|.+|+.++............+..+|..||.+++|+|+
T Consensus 23 ~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~ 102 (149)
T PTZ00184 23 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFIS 102 (149)
T ss_pred CCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEe
Confidence 35889999999999999999999999999998764 5789999999998765444445667899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHhcC
Q 005884 623 VEDLRLIIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMSDI 672 (672)
Q Consensus 623 ~dDLKeILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~l 672 (672)
..+|..+|..+|..++..++..|+..+ +.+++|.|+|.+|+.+|.+
T Consensus 103 ~~e~~~~l~~~~~~~~~~~~~~~~~~~----d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 103 AAELRHVMTNLGEKLTDEEVDEMIREA----DVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHhc----CCCCCCcCcHHHHHHHHhc
Confidence 999999999999999999999999998 4889999999999999864
No 7
>PTZ00183 centrin; Provisional
Probab=99.55 E-value=1.1e-13 Score=125.97 Aligned_cols=122 Identities=17% Similarity=0.269 Sum_probs=109.2
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHhhC--CCCccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCceeH
Q 005884 546 KTDANAQSGMESGNEKDKANESNKEKTIMEAAEV--KHSDVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGYIRV 623 (672)
Q Consensus 546 ~sgaI~~sEL~~aLRsLG~epSEeEIeemIsdiD--~dGkIDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGyIt~ 623 (672)
++|.|+..||..+|+.+|..++...+..++..++ ++|.|+|.+|+.++............+..+|..||.+++|+|+.
T Consensus 30 ~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~ 109 (158)
T PTZ00183 30 GSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISL 109 (158)
T ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcH
Confidence 4889999999999999999999999999988764 68899999999977654444456678999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 624 EDLRLIIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 624 dDLKeILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
.+|..+|..+|..++..++..||..+ +.+++|.|+|.+|+.+|.
T Consensus 110 ~e~~~~l~~~~~~l~~~~~~~~~~~~----d~~~~g~i~~~ef~~~~~ 153 (158)
T PTZ00183 110 KNLKRVAKELGETITDEELQEMIDEA----DRNGDGEISEEEFYRIMK 153 (158)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHh----CCCCCCcCcHHHHHHHHh
Confidence 99999999999999999999999999 478999999999999874
No 8
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=99.51 E-value=5.4e-14 Score=159.12 Aligned_cols=204 Identities=37% Similarity=0.504 Sum_probs=141.1
Q ss_pred CCCCcccccccccccccccchhhhcccccCccccc-CCCcc-cccccccCCCccchhccccccccCCC--------Ccch
Q 005884 227 GNGDQKSLVQSENKTQDAGTQLADAEKKTSPEMKS-KTPGA-LKLDVVANSSKTEIKVEKDGKKAGMG--------ADVE 296 (672)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 296 (672)
+..+.++.+-..+..+.+|.. -++|..-| ...-. +.+..++-.......+-++-++.+.| ++.+
T Consensus 752 ~lpdekkI~v~p~ks~kSGkf------dck~~slSsLlDyrhddNke~tfeVslfae~f~em~~r~a~~~iyk~l~t~~d 825 (1194)
T KOG4246|consen 752 GLPDEKKIMVVPKKSSKSGKF------DCKPTSLSSLLDYRHDDNKEKTFEVSLFAESFDEMKKRGASSSIYKDLKTGED 825 (1194)
T ss_pred cCCCCceeEEeccccccCCcc------cccchhhhHhhhhhccccccceeeeehhhhhhHHHHhcccchhhHhhhhcCcc
Confidence 455666777777777777776 33333222 22222 33333344566667777887777776 3688
Q ss_pred hhhhhhccccccccccccCC--CCCCCcccCCCCCCCCCCCCCCCCCCChhhhcccCCCCCCCCCceEEeecCCCCcccc
Q 005884 297 SKTAKEKVSLKDTSIGIRGN--SKDGEKSKDEKPKNDKDGKGESRSHSNKEGKEKRKPEEPPRHPGLILQMKSNKDSKLR 374 (672)
Q Consensus 297 ~k~~~~k~~~~~~~~~~~~~--~k~~~~~kd~k~~k~~~~~~~~~~~~~~e~ke~k~~ee~P~~P~~i~~~~~~k~~k~~ 374 (672)
.++.|.+.++. -+|-+.. .++.+.++.-+. +++.+.+.|-+.--+++..|+.|++|. -++|.++++.++++++
T Consensus 826 k~aeKk~~~et--~e~~~~dk~~~~~~Et~Ek~~--e~e~k~d~Kdekrd~~kDekk~E~~~k-~~~id~~~~~~~s~~~ 900 (1194)
T KOG4246|consen 826 KKAEKKNNSET--MEGKKIDKNNTDEKETKEKVT--EKEIKEDGKDEKRDQVKDEKKCEEPPK-AGFIDQTKRNKDSKLR 900 (1194)
T ss_pred hhhhhhcchhh--hcccccCCCcCChhhhccccc--chhhccccchhhhhhhhhhhhhhcccc-ccccchhhhhhhhhhh
Confidence 88888887743 3442222 222111111111 223333334444456788888888887 8899999999999999
Q ss_pred ccccchhhhccCCcCCcccceehhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHhhhhHHHhhhccCCCC
Q 005884 375 SLSLSLDSLLDYTDKDIEESSFELSLFGEMLYEMLQYQMGCRVLEFLQGLRIKFLSERNERKRQRSEVQEKENDKKSP 452 (672)
Q Consensus 375 ~~~~SL~~LLdY~~~D~~E~tFEvSLfaElF~EMLqrd~G~~I~~~L~~l~~k~v~kr~~rKrkree~~eke~~~~s~ 452 (672)
++++|+++||+|+..+-.|.+||.++||+..+|||+++| ..+.+..+|+|+++.++...+.+...++
T Consensus 901 ~~s~~d~nl~~Y~~~~~~E~~~e~~~f~~s~~em~k~~~-----------k~~I~r~~n~R~~~d~e~~~~qn~~~s~ 967 (1194)
T KOG4246|consen 901 SLSASDDNLLDYTDKDLDESSFEISLFAESLYEMLKYQM-----------KVKIVRQRNQRKRHDEELSVKQNEAKSQ 967 (1194)
T ss_pred hhccccccccccCchhhhhhhhhhhhhhhhHHHHHHHHH-----------HHHHHHHhhcccchhhhhhhhhchhcCc
Confidence 999999999999999999999999999999999999999 4566778999999887777777665554
No 9
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.50 E-value=1.6e-13 Score=130.10 Aligned_cols=120 Identities=18% Similarity=0.230 Sum_probs=106.5
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHhhCCC----CccchHHHHHHHHhh--cCCCChHHHHHHHhhhhcCCCCC
Q 005884 546 KTDANAQSGMESGNEKDKANESNKEKTIMEAAEVKH----SDVDMGKKGERNVET--GKKEVFDKELLQAFRFFDRNQVG 619 (672)
Q Consensus 546 ~sgaI~~sEL~~aLRsLG~epSEeEIeemIsdiD~d----GkIDFdEFLaima~k--~k~~d~eEELreAFkvFDkDgdG 619 (672)
+.+.|+..++..+||+||.+||+.++...+.....+ -.|+|+.||.++... .....+.+++...+++||++++|
T Consensus 24 gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~edfvegLrvFDkeg~G 103 (152)
T KOG0030|consen 24 GDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGNG 103 (152)
T ss_pred CcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHHHHHHHHhhcccCCc
Confidence 578999999999999999999999999988776554 579999999987532 23456678999999999999999
Q ss_pred ceeHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHh
Q 005884 620 YIRVEDLRLIIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMS 670 (672)
Q Consensus 620 yIt~dDLKeILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM 670 (672)
+|...+|+++|.+||+.|+.+++..|+.-. .|.+|.|+|+.|++.+
T Consensus 104 ~i~~aeLRhvLttlGekl~eeEVe~Llag~-----eD~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 104 TIMGAELRHVLTTLGEKLTEEEVEELLAGQ-----EDSNGCINYEAFVKHI 149 (152)
T ss_pred ceeHHHHHHHHHHHHhhccHHHHHHHHccc-----cccCCcCcHHHHHHHH
Confidence 999999999999999999999999999887 5788999999999864
No 10
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.18 E-value=2.5e-10 Score=112.86 Aligned_cols=123 Identities=18% Similarity=0.195 Sum_probs=100.7
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCc-cchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCceeHH
Q 005884 546 KTDANAQSGMESGNEKDKANESNKEKTIMEAAEVKHSD-VDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGYIRVE 624 (672)
Q Consensus 546 ~sgaI~~sEL~~aLRsLG~epSEeEIeemIsdiD~dGk-IDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGyIt~d 624 (672)
+.|.|+..||..+. .+..+|-..-|-.++.. +++|. |+|.+|+.++............+..||++||.+++|+|+..
T Consensus 47 ~~g~lt~eef~~i~-~~~~Np~~~rI~~~f~~-~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~re 124 (187)
T KOG0034|consen 47 GDGYLTKEEFLSIP-ELALNPLADRIIDRFDT-DGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISRE 124 (187)
T ss_pred ccCccCHHHHHHHH-HHhcCcHHHHHHHHHhc-cCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHH
Confidence 57888999998888 56777766666555443 33444 99999999887766555666799999999999999999999
Q ss_pred HHHHHHHHc-CCCCC--HHHHHHHHHHhhccCCCCCCCcccHHHHHHHh
Q 005884 625 DLRLIIHNL-GKFLS--HRDVKELVQSALLESNTGRDDRILYNKLVRMS 670 (672)
Q Consensus 625 DLKeILktL-GekLS--~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM 670 (672)
+|..+|..+ |...+ .+++..|+...-.++|.++||.|+|+||+.++
T Consensus 125 el~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v 173 (187)
T KOG0034|consen 125 ELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVV 173 (187)
T ss_pred HHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 999999986 55566 88888888887777789999999999999876
No 11
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.05 E-value=3.7e-10 Score=99.48 Aligned_cols=64 Identities=9% Similarity=0.276 Sum_probs=60.3
Q ss_pred HHHHHHhhhhcC-CCCCceeHHHHHHHHHH-cCCCCCH-HHHHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 604 KELLQAFRFFDR-NQVGYIRVEDLRLIIHN-LGKFLSH-RDVKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 604 EELreAFkvFDk-DgdGyIt~dDLKeILkt-LGekLS~-EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
..|+.+|+.||+ +++|+|+..+|+.+|.. ||..++. .+++.||..+ |.|+||.|+|.+|+.||.
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~----D~d~DG~I~F~EF~~l~~ 74 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNL----DVNQDSKLSFEEFWELIG 74 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHh----CCCCCCCCcHHHHHHHHH
Confidence 479999999999 99999999999999999 9999998 9999999999 589999999999999874
No 12
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.98 E-value=1.3e-09 Score=87.88 Aligned_cols=62 Identities=31% Similarity=0.588 Sum_probs=55.1
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHH----HHHhhccCCCCCCCcccHHHHHHHh
Q 005884 605 ELLQAFRFFDRNQVGYIRVEDLRLIIHNLGKFLSHRDVKEL----VQSALLESNTGRDDRILYNKLVRMS 670 (672)
Q Consensus 605 ELreAFkvFDkDgdGyIt~dDLKeILktLGekLS~EEVkeL----IkeaD~esD~DgDGkIsYeEFVkmM 670 (672)
.|+.+|..||.+++|+|+..+|..++..++..++..++..+ |..+ |.+++|.|+|.||+.+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~----D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREF----DTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHH----TTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHh----CCCCcCCCcHHHHhccC
Confidence 47899999999999999999999999999988777666665 6666 69999999999999986
No 13
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.92 E-value=1.2e-08 Score=101.66 Aligned_cols=121 Identities=13% Similarity=0.169 Sum_probs=96.1
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCHHHHHHHH-Hhh--CCCCccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCce
Q 005884 545 GKTDANAQSGMESGNEKDKANESNKEKTIME-AAE--VKHSDVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGYI 621 (672)
Q Consensus 545 ~~sgaI~~sEL~~aLRsLG~epSEeEIeemI-sdi--D~dGkIDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGyI 621 (672)
-.+|.++..+++.+++..+...........+ +.. +++|.|+|.+|+..+....+ ...++.|..+|++||.||+|||
T Consensus 39 cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~r-Gt~eekl~w~F~lyD~dgdG~I 117 (193)
T KOG0044|consen 39 CPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSR-GTLEEKLKWAFRLYDLDGDGYI 117 (193)
T ss_pred CCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcC-CcHHHHhhhhheeecCCCCceE
Confidence 4589999999999999998766666555544 433 56999999999997765444 4567889999999999999999
Q ss_pred eHHHHHHHHHHc----CC------CC-CHHHHHHHHHHhhccCCCCCCCcccHHHHHHHh
Q 005884 622 RVEDLRLIIHNL----GK------FL-SHRDVKELVQSALLESNTGRDDRILYNKLVRMS 670 (672)
Q Consensus 622 t~dDLKeILktL----Ge------kL-S~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM 670 (672)
+..+|..|+..+ |. .. ...-+..+|..+ |.|+||.|++++|+..+
T Consensus 118 t~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~----D~n~Dg~lT~eef~~~~ 173 (193)
T KOG0044|consen 118 TKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKM----DKNKDGKLTLEEFIEGC 173 (193)
T ss_pred cHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHc----CCCCCCcccHHHHHHHh
Confidence 999999988764 42 11 234567889999 58999999999998754
No 14
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.88 E-value=5.6e-09 Score=91.40 Aligned_cols=64 Identities=14% Similarity=0.332 Sum_probs=59.4
Q ss_pred HHHHHHhhhhc-CCCCC-ceeHHHHHHHHHH-----cCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 604 KELLQAFRFFD-RNQVG-YIRVEDLRLIIHN-----LGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 604 EELreAFkvFD-kDgdG-yIt~dDLKeILkt-----LGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
..|+.+|..|| ++++| +|+..+|+.+|++ +|...+..+|..||..+ |.+++|.|+|.+|+.++.
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~----D~n~dG~v~f~eF~~li~ 78 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETL----DSDGDGECDFQEFMAFVA 78 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHh----CCCCCCcCcHHHHHHHHH
Confidence 47999999998 89999 5999999999999 89999999999999999 589999999999998873
No 15
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.86 E-value=3.2e-08 Score=99.94 Aligned_cols=115 Identities=16% Similarity=0.155 Sum_probs=97.6
Q ss_pred CCCCCCCHHHHHHHHHhcCCC-CCHHHHHHHHHhhC--CCCccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCce
Q 005884 545 GKTDANAQSGMESGNEKDKAN-ESNKEKTIMEAAEV--KHSDVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGYI 621 (672)
Q Consensus 545 ~~sgaI~~sEL~~aLRsLG~e-pSEeEIeemIsdiD--~dGkIDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGyI 621 (672)
.+++.|+..||..+|..++.. .+...+..||.-+| ..|+|+|.||..+-. .-...+.+|+.||+|++|.|
T Consensus 69 d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~-------~i~~Wr~vF~~~D~D~SG~I 141 (221)
T KOG0037|consen 69 DRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWK-------YINQWRNVFRTYDRDRSGTI 141 (221)
T ss_pred cccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH-------HHHHHHHHHHhcccCCCCcc
Confidence 458999999999999977654 45666777777654 589999999998642 24579999999999999999
Q ss_pred eHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHh
Q 005884 622 RVEDLRLIIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMS 670 (672)
Q Consensus 622 t~dDLKeILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM 670 (672)
...||+.+|..||..|+..-++-||...+ .-+.|.|.|++|+.++
T Consensus 142 ~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd----~~~~g~i~FD~FI~cc 186 (221)
T KOG0037|consen 142 DSSELRQALTQLGYRLSPQFYNLLVRKYD----RFGGGRIDFDDFIQCC 186 (221)
T ss_pred cHHHHHHHHHHcCcCCCHHHHHHHHHHhc----cccCCceeHHHHHHHH
Confidence 99999999999999999999999999984 4458999999999865
No 16
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.77 E-value=2e-08 Score=87.60 Aligned_cols=64 Identities=13% Similarity=0.323 Sum_probs=57.9
Q ss_pred HHHHHHHhhhhcC-CC-CCceeHHHHHHHHHH-----cCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHh
Q 005884 603 DKELLQAFRFFDR-NQ-VGYIRVEDLRLIIHN-----LGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMS 670 (672)
Q Consensus 603 eEELreAFkvFDk-Dg-dGyIt~dDLKeILkt-----LGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM 670 (672)
...|+.+|..||. ++ +|+|+..+|+.+|.. +|..++..++..||..+ |.+++|.|+|.+|+.+|
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~----D~~~dg~I~f~eF~~l~ 77 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDL----DQNRDGKVNFEEFVSLV 77 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHh----CCCCCCcCcHHHHHHHH
Confidence 3579999999997 97 799999999999986 57788999999999999 48999999999999887
No 17
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.75 E-value=3.2e-08 Score=95.42 Aligned_cols=121 Identities=12% Similarity=0.112 Sum_probs=97.2
Q ss_pred CCCCHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCceeHHHHH
Q 005884 548 DANAQSGMESGNEKDKANESNKEKTIMEAAEVKHSDVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGYIRVEDLR 627 (672)
Q Consensus 548 gaI~~sEL~~aLRsLG~epSEeEIeemIsdiD~dGkIDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGyIt~dDLK 627 (672)
..++. |+..-|-.|.-+|-..-|-+.+++ |+.|.++|+.|+.|+.-.-.+...+-.+.-||++||-|+++||...+|.
T Consensus 54 v~vp~-e~i~kMPELkenpfk~ri~e~FSe-DG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~ 131 (189)
T KOG0038|consen 54 VKVPF-ELIEKMPELKENPFKRRICEVFSE-DGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLE 131 (189)
T ss_pred eeecH-HHHhhChhhhcChHHHHHHHHhcc-CCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHH
Confidence 34444 556667778888887777766654 8899999999999876544455556678889999999999999999999
Q ss_pred HHHHHc-CCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHh
Q 005884 628 LIIHNL-GKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMS 670 (672)
Q Consensus 628 eILktL-GekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM 670 (672)
..|..| ...|+.+++..++..+..+.|.|+||+|+|.+|-.++
T Consensus 132 ~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i 175 (189)
T KOG0038|consen 132 KTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVI 175 (189)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Confidence 999998 3558999987776666556689999999999998876
No 18
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.73 E-value=3.7e-08 Score=85.45 Aligned_cols=65 Identities=12% Similarity=0.307 Sum_probs=57.2
Q ss_pred HHHHHHHhhhhc-CCCCCc-eeHHHHHHHHHH-cCC----CCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 603 DKELLQAFRFFD-RNQVGY-IRVEDLRLIIHN-LGK----FLSHRDVKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 603 eEELreAFkvFD-kDgdGy-It~dDLKeILkt-LGe----kLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
...|+.+|.+|| .+++|+ |+..+|+.+|+. +|. .++..+++.||..+ |.+++|.|+|.+|+.+|.
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~----D~d~~G~I~f~eF~~l~~ 79 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKEL----DENGDGEVDFQEFVVLVA 79 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHH----CCCCCCcCcHHHHHHHHH
Confidence 367999999997 999995 999999999986 654 45889999999999 589999999999999873
No 19
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.72 E-value=3.3e-08 Score=92.68 Aligned_cols=65 Identities=25% Similarity=0.516 Sum_probs=61.8
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 603 DKELLQAFRFFDRNQVGYIRVEDLRLIIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 603 eEELreAFkvFDkDgdGyIt~dDLKeILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
..+|+.+|.+||.+++|+|+..+|..+|+.||..++..++..|+..+ |.+++|.|+|.+|+.||.
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~----D~dg~g~I~~~eF~~l~~ 71 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEI----DLDGDGTIDFEEFLDLME 71 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHh----CCCCCCeEcHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999 589999999999999874
No 20
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.69 E-value=5e-08 Score=85.49 Aligned_cols=64 Identities=14% Similarity=0.356 Sum_probs=58.3
Q ss_pred HHHHHHhhhhcC-CC-CCceeHHHHHHHHH---HcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 604 KELLQAFRFFDR-NQ-VGYIRVEDLRLIIH---NLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 604 EELreAFkvFDk-Dg-dGyIt~dDLKeILk---tLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
..|..+|..||. ++ .|+|+..+|+.+|. ++|..++..++.+||..+ |.+++|+|+|.+|+.+|.
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~----D~d~dG~Idf~EFv~lm~ 78 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDL----DRNKDQEVNFQEYVTFLG 78 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----cCCCCCCCcHHHHHHHHH
Confidence 468899999998 77 89999999999996 479999999999999999 589999999999999874
No 21
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.66 E-value=5.3e-08 Score=77.59 Aligned_cols=59 Identities=19% Similarity=0.253 Sum_probs=54.2
Q ss_pred HHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 607 LQAFRFFDRNQVGYIRVEDLRLIIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 607 reAFkvFDkDgdGyIt~dDLKeILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
+.+|..||.+++|+|+..+|..+|..+|. +..++..|+..+ +.+++|.|+|.+|+.+|.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~----d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLA----DTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHh----cCCCCCcCCHHHHHHHHH
Confidence 57899999999999999999999999874 899999999999 488999999999999874
No 22
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.65 E-value=8.9e-08 Score=84.15 Aligned_cols=64 Identities=14% Similarity=0.363 Sum_probs=55.1
Q ss_pred HHHHHHhhhhc-CCCCCc-eeHHHHHHHHHH-c----CCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 604 KELLQAFRFFD-RNQVGY-IRVEDLRLIIHN-L----GKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 604 EELreAFkvFD-kDgdGy-It~dDLKeILkt-L----GekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
..|+.+|..|| .|++|+ |+..+|+.+|.. + +...+..+|..||..+ |.+++|.|+|.+|+.||.
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~el----D~n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDL----DSNKDNEVDFNEFVVLVA 80 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHh----CCCCCCCCCHHHHHHHHH
Confidence 46888999999 789995 999999999977 3 3345778999999999 489999999999999873
No 23
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.64 E-value=8.5e-08 Score=83.84 Aligned_cols=63 Identities=19% Similarity=0.254 Sum_probs=57.8
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 603 DKELLQAFRFFDRNQVGYIRVEDLRLIIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 603 eEELreAFkvFDkDgdGyIt~dDLKeILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
...++.+|..||.+++|+|+..+|+.+|+.+| ++..++..||..+ |.+++|.|+|.+|+.+|.
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~----d~~~~g~I~~~eF~~~~~ 71 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLA----DIDNDGELDKDEFALAMH 71 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHh----cCCCCCCcCHHHHHHHHH
Confidence 45799999999999999999999999999976 6899999999998 488999999999999874
No 24
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.61 E-value=1e-07 Score=81.55 Aligned_cols=65 Identities=11% Similarity=0.368 Sum_probs=57.2
Q ss_pred HHHHHHHhhhhcC--CCCCceeHHHHHHHHHH-cCCCC----CHHHHHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 603 DKELLQAFRFFDR--NQVGYIRVEDLRLIIHN-LGKFL----SHRDVKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 603 eEELreAFkvFDk--DgdGyIt~dDLKeILkt-LGekL----S~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
...|+.+|..||+ +++|+|+..+|..+|+. +|..+ +..++..||..+ +.+++|.|+|.+|+.+|.
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~----d~~~~g~I~f~eF~~~~~ 78 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDL----DVNKDGKVDFQEFLVLIG 78 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHh----ccCCCCcCcHHHHHHHHH
Confidence 3578999999999 89999999999999986 66555 589999999999 478999999999999873
No 25
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.60 E-value=3.2e-07 Score=99.80 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=101.9
Q ss_pred CCCCCCHHHHHHHHHhcCCC-CCHHHHHHHHHhh--CCCCccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCcee
Q 005884 546 KTDANAQSGMESGNEKDKAN-ESNKEKTIMEAAE--VKHSDVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGYIR 622 (672)
Q Consensus 546 ~sgaI~~sEL~~aLRsLG~e-pSEeEIeemIsdi--D~dGkIDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGyIt 622 (672)
..|.++..+|..+|.+|... +...-...+++.+ +.+|.+||.+|...+. ..+.+|.+.|..+|.+++|.|.
T Consensus 27 ~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~------~~E~~l~~~F~~iD~~hdG~i~ 100 (463)
T KOG0036|consen 27 NDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLD------NKELELYRIFQSIDLEHDGKID 100 (463)
T ss_pred CCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHH------HhHHHHHHHHhhhccccCCccC
Confidence 46889999999999999877 5555556666765 5689999999998763 3467899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHhcC
Q 005884 623 VEDLRLIIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMSDI 672 (672)
Q Consensus 623 ~dDLKeILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~l 672 (672)
..+|.+.|..+|..|+.+++..+|..+ |.++.+.|++.+|...+.|
T Consensus 101 ~~Ei~~~l~~~gi~l~de~~~k~~e~~----d~~g~~~I~~~e~rd~~ll 146 (463)
T KOG0036|consen 101 PNEIWRYLKDLGIQLSDEKAAKFFEHM----DKDGKATIDLEEWRDHLLL 146 (463)
T ss_pred HHHHHHHHHHhCCccCHHHHHHHHHHh----ccCCCeeeccHHHHhhhhc
Confidence 999999999999999999999999999 4899999999999887654
No 26
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.50 E-value=4.9e-07 Score=68.03 Aligned_cols=61 Identities=26% Similarity=0.592 Sum_probs=57.2
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHh
Q 005884 606 LLQAFRFFDRNQVGYIRVEDLRLIIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMS 670 (672)
Q Consensus 606 LreAFkvFDkDgdGyIt~dDLKeILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM 670 (672)
+..+|..||.+++|+|+..++..+|..+|...+...+..++..+ +.+++|.|+|.+|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREV----DKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh----CCCCCCeEeHHHHHHHh
Confidence 67899999999999999999999999999999999999999999 47889999999999876
No 27
>PLN02964 phosphatidylserine decarboxylase
Probab=98.47 E-value=6.9e-07 Score=102.41 Aligned_cols=96 Identities=13% Similarity=0.097 Sum_probs=82.6
Q ss_pred HHHHHHhcC-CCCCHHH---HHHHHHhhC--CCCccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCceeHHHHHH
Q 005884 555 MESGNEKDK-ANESNKE---KTIMEAAEV--KHSDVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGYIRVEDLRL 628 (672)
Q Consensus 555 L~~aLRsLG-~epSEeE---IeemIsdiD--~dGkIDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGyIt~dDLKe 628 (672)
|..+|+++| +.|++.+ +..|+..+| ++|.|+|.+|+.+|.. +......++|..||++||.|++|+|+.++|..
T Consensus 161 Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~-lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~ 239 (644)
T PLN02964 161 VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKA-FGNLVAANKKEELFKAADLNGDGVVTIDELAA 239 (644)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHH-hccCCCHHHHHHHHHHhCCCCCCcCCHHHHHH
Confidence 899999999 6999998 788888764 6889999999998874 44456778999999999999999999999999
Q ss_pred HHHH-------------cCCCCCH-HHHHHHHHHhhc
Q 005884 629 IIHN-------------LGKFLSH-RDVKELVQSALL 651 (672)
Q Consensus 629 ILkt-------------LGekLS~-EEVkeLIkeaD~ 651 (672)
+|.. +|..|+. +++..|+..+.|
T Consensus 240 vL~~~~~~~~~~~~cp~cg~~l~~~~~~~~iiH~~~c 276 (644)
T PLN02964 240 LLALQQEQEPIINNCPVCGEALGVSDKLNAMIHMTLC 276 (644)
T ss_pred HHHhcccCcchhhhchhhcCcccchhhHHHHHHHHHh
Confidence 9999 7888888 788888865544
No 28
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.43 E-value=6.2e-07 Score=70.14 Aligned_cols=51 Identities=27% Similarity=0.438 Sum_probs=47.5
Q ss_pred CCCceeHHHHHHHHHHcCCC-CCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 617 QVGYIRVEDLRLIIHNLGKF-LSHRDVKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 617 gdGyIt~dDLKeILktLGek-LS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
.+|+|+.++|+.+|..+|.. ++..++..||..+ |.+++|.|+|.+|+.+|.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~----D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREF----DTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHH----TTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhc----ccCCCCCCCHHHHHHHHH
Confidence 37999999999999889999 9999999999999 589999999999999873
No 29
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.37 E-value=1.2e-06 Score=76.97 Aligned_cols=64 Identities=5% Similarity=0.162 Sum_probs=55.9
Q ss_pred HHHHHHhhh-hcCCCCC-ceeHHHHHHHHHHc-----CCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 604 KELLQAFRF-FDRNQVG-YIRVEDLRLIIHNL-----GKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 604 EELreAFkv-FDkDgdG-yIt~dDLKeILktL-----GekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
..|+.+|.. +|.+|+| +|+..+|+.+|... +...+..++..||..+ |.++||.|+|.+|+.+|.
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~----D~d~DG~I~f~EF~~l~~ 79 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKL----DLNSDGQLDFQEFLNLIG 79 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHc----CCCCCCcCcHHHHHHHHH
Confidence 468999998 7898976 99999999999885 4456789999999999 589999999999999873
No 30
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.29 E-value=1.7e-06 Score=84.31 Aligned_cols=100 Identities=11% Similarity=0.064 Sum_probs=69.7
Q ss_pred CCCHHHHHHHHHh---h--CCCCccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc-CCCCC
Q 005884 565 NESNKEKTIMEAA---E--VKHSDVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGYIRVEDLRLIIHNL-GKFLS 638 (672)
Q Consensus 565 epSEeEIeemIsd---i--D~dGkIDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGyIt~dDLKeILktL-GekLS 638 (672)
..+..+++.+-.+ + +++|.|++.+|..++. .+....+...+..+|..+|. +.|+|+..+|..+|... ...-+
T Consensus 13 ~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr-~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~ 90 (160)
T COG5126 13 QLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILR-SLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDK 90 (160)
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHH-HcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCc
Confidence 4556666555332 2 4577888888887775 45555667778888888887 78888888777777653 34455
Q ss_pred HHHHHHHHHHhhccCCCCCCCcccHHHHHHHh
Q 005884 639 HRDVKELVQSALLESNTGRDDRILYNKLVRMS 670 (672)
Q Consensus 639 ~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM 670 (672)
.+++...|+.+ |.+++|+|++.+++.++
T Consensus 91 ~Eel~~aF~~f----D~d~dG~Is~~eL~~vl 118 (160)
T COG5126 91 EEELREAFKLF----DKDHDGYISIGELRRVL 118 (160)
T ss_pred HHHHHHHHHHh----CCCCCceecHHHHHHHH
Confidence 77777777777 47788888888877765
No 31
>PTZ00183 centrin; Provisional
Probab=98.22 E-value=4.2e-06 Score=76.36 Aligned_cols=100 Identities=14% Similarity=0.085 Sum_probs=78.1
Q ss_pred CCHHHHHH---HHHhh--CCCCccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc-CCCCCH
Q 005884 566 ESNKEKTI---MEAAE--VKHSDVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGYIRVEDLRLIIHNL-GKFLSH 639 (672)
Q Consensus 566 pSEeEIee---mIsdi--D~dGkIDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGyIt~dDLKeILktL-GekLS~ 639 (672)
.+..++.. ++..+ +++|.|++.+|..++.. +........+..+|..||.+++|.|+..++..++... ......
T Consensus 11 ~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~-~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~ 89 (158)
T PTZ00183 11 LTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRS-LGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPR 89 (158)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHH-hCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcH
Confidence 44444444 34434 56899999999887753 2333456789999999999999999999999988764 455677
Q ss_pred HHHHHHHHHhhccCCCCCCCcccHHHHHHHh
Q 005884 640 RDVKELVQSALLESNTGRDDRILYNKLVRMS 670 (672)
Q Consensus 640 EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM 670 (672)
..+..++..+ |.+++|.|++.+|+.++
T Consensus 90 ~~l~~~F~~~----D~~~~G~i~~~e~~~~l 116 (158)
T PTZ00183 90 EEILKAFRLF----DDDKTGKISLKNLKRVA 116 (158)
T ss_pred HHHHHHHHHh----CCCCCCcCcHHHHHHHH
Confidence 8899999988 58999999999999876
No 32
>PTZ00184 calmodulin; Provisional
Probab=98.20 E-value=4.6e-06 Score=74.81 Aligned_cols=88 Identities=13% Similarity=0.083 Sum_probs=71.4
Q ss_pred CCCCccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc-CCCCCHHHHHHHHHHhhccCCCCC
Q 005884 579 VKHSDVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGYIRVEDLRLIIHNL-GKFLSHRDVKELVQSALLESNTGR 657 (672)
Q Consensus 579 D~dGkIDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGyIt~dDLKeILktL-GekLS~EEVkeLIkeaD~esD~Dg 657 (672)
+++|.|++.+|..++.. +........+..+|..||.+++|+|+..++..+|..+ ........+..+|..+ |.++
T Consensus 23 ~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~----D~~~ 97 (149)
T PTZ00184 23 DGDGTITTKELGTVMRS-LGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVF----DRDG 97 (149)
T ss_pred CCCCcCCHHHHHHHHHH-hCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhh----CCCC
Confidence 56899999999987643 3333456789999999999999999999999998865 3334556788888888 5899
Q ss_pred CCcccHHHHHHHhc
Q 005884 658 DDRILYNKLVRMSD 671 (672)
Q Consensus 658 DGkIsYeEFVkmM~ 671 (672)
+|.|+..+|..+|.
T Consensus 98 ~g~i~~~e~~~~l~ 111 (149)
T PTZ00184 98 NGFISAAELRHVMT 111 (149)
T ss_pred CCeEeHHHHHHHHH
Confidence 99999999988763
No 33
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.17 E-value=4.1e-06 Score=73.03 Aligned_cols=64 Identities=9% Similarity=0.390 Sum_probs=56.2
Q ss_pred HHHHHHhhhhcCC--CCCceeHHHHHHHHH-HcCCCCC----HHHHHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 604 KELLQAFRFFDRN--QVGYIRVEDLRLIIH-NLGKFLS----HRDVKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 604 EELreAFkvFDkD--gdGyIt~dDLKeILk-tLGekLS----~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
..|...|..|+.. ++|+|+..+|+.+|. .+|..++ ..++..||..+ |.+++|.|+|.+|+.+|.
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~----D~d~dG~I~f~eF~~~~~ 78 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDL----DTNQDGQLSFEEFLVLVI 78 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHc----CCCCCCcCcHHHHHHHHH
Confidence 4678899999865 589999999999997 6787787 99999999999 589999999999999873
No 34
>PF14658 EF-hand_9: EF-hand domain
Probab=98.10 E-value=7.8e-06 Score=69.41 Aligned_cols=59 Identities=15% Similarity=0.343 Sum_probs=55.1
Q ss_pred HhhhhcCCCCCceeHHHHHHHHHHcCC-CCCHHHHHHHHHHhhccCCCCCC-CcccHHHHHHHhc
Q 005884 609 AFRFFDRNQVGYIRVEDLRLIIHNLGK-FLSHRDVKELVQSALLESNTGRD-DRILYNKLVRMSD 671 (672)
Q Consensus 609 AFkvFDkDgdGyIt~dDLKeILktLGe-kLS~EEVkeLIkeaD~esD~DgD-GkIsYeEFVkmM~ 671 (672)
+|.+||.++.|.|....|..+|+.+|. ..++.+++.|.+.+ |+++. |.|+|+.|+.+|.
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~el----DP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINEL----DPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHh----CCCCCCceEeHHHHHHHHH
Confidence 799999999999999999999999988 88999999999999 47776 9999999999984
No 35
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.01 E-value=1.5e-05 Score=73.74 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=52.4
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHh
Q 005884 603 DKELLQAFRFFDRNQVGYIRVEDLRLIIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMS 670 (672)
Q Consensus 603 eEELreAFkvFDkDgdGyIt~dDLKeILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM 670 (672)
...|..+|..||.|++|+|+..||..++ ++ .....+..+|..+ |.++||.|+|.||+.++
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~--~~e~~~~~f~~~~----D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR--LD--PNEHCIKPFFESC----DLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH--cc--chHHHHHHHHHHH----CCCCCCCCCHHHHHHHH
Confidence 4679999999999999999999999887 32 3467788899999 58999999999999876
No 36
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.98 E-value=1.5e-05 Score=77.77 Aligned_cols=61 Identities=30% Similarity=0.523 Sum_probs=57.2
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 603 DKELLQAFRFFDRNQVGYIRVEDLRLIIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 603 eEELreAFkvFDkDgdGyIt~dDLKeILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
-.++++||.++|.|++|+|...||+.+|.+||...++++|..||.++ .|.|+|--|+.|++
T Consensus 31 IqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea--------~gPINft~FLTmfG 91 (171)
T KOG0031|consen 31 IQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA--------PGPINFTVFLTMFG 91 (171)
T ss_pred HHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC--------CCCeeHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999998 47899999999874
No 37
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.94 E-value=1.7e-05 Score=80.25 Aligned_cols=65 Identities=17% Similarity=0.395 Sum_probs=59.9
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 603 DKELLQAFRFFDRNQVGYIRVEDLRLIIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 603 eEELreAFkvFDkDgdGyIt~dDLKeILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
-..+..+|..||.+.+|||+..+|+.+|..||.+-|+--++.||.+++ .|.+|+|+|.+|+-|+.
T Consensus 98 Ik~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVd----ed~dgklSfreflLIfr 162 (244)
T KOG0041|consen 98 IKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVD----EDFDGKLSFREFLLIFR 162 (244)
T ss_pred HHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhh----cccccchhHHHHHHHHH
Confidence 356788999999999999999999999999999999999999999995 89999999999987763
No 38
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=97.91 E-value=6.2e-05 Score=75.44 Aligned_cols=114 Identities=15% Similarity=0.064 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhh---CCCCccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCceeHHHHHH
Q 005884 552 QSGMESGNEKDKANESNKEKTIMEAAE---VKHSDVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGYIRVEDLRL 628 (672)
Q Consensus 552 ~sEL~~aLRsLG~epSEeEIeemIsdi---D~dGkIDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGyIt~dDLKe 628 (672)
..-+..+.+.-. .+..+|..+.+.. -+.|.++..+|..+.+......+...-...+|+.||.|++|+|+..+|..
T Consensus 11 ~~~~e~l~~~t~--f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~ 88 (193)
T KOG0044|consen 11 PESLEQLVQQTK--FSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFIC 88 (193)
T ss_pred cHHHHHHHHhcC--CCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHH
Confidence 333444444333 4678888887764 35899999999998887666666777788999999999999999999888
Q ss_pred HHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 629 IIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 629 ILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
.|+.+--.-.++-++..++ .||.|++|.|++.+++.++.
T Consensus 89 als~~~rGt~eekl~w~F~----lyD~dgdG~It~~Eml~iv~ 127 (193)
T KOG0044|consen 89 ALSLTSRGTLEEKLKWAFR----LYDLDGDGYITKEEMLKIVQ 127 (193)
T ss_pred HHHHHcCCcHHHHhhhhhe----eecCCCCceEcHHHHHHHHH
Confidence 8877532223333443433 35799999999999998874
No 39
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=97.86 E-value=3e-05 Score=75.92 Aligned_cols=97 Identities=18% Similarity=0.166 Sum_probs=77.1
Q ss_pred HHHHHHHhh--CCCCccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCceeHHHHHHHHHH-cCCCCCHHHHHHHH
Q 005884 570 EKTIMEAAE--VKHSDVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGYIRVEDLRLIIHN-LGKFLSHRDVKELV 646 (672)
Q Consensus 570 EIeemIsdi--D~dGkIDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGyIt~dDLKeILkt-LGekLS~EEVkeLI 646 (672)
++...+..+ ++.|.|++.+|-.+|. .+.-.....++..+..-+|+++.|+|+..+|.++|.. +|..-|.++|..+|
T Consensus 34 ~i~e~f~lfd~~~~g~iD~~EL~vAmr-alGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~af 112 (172)
T KOG0028|consen 34 EIKEAFELFDPDMAGKIDVEELKVAMR-ALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAF 112 (172)
T ss_pred hHHHHHHhhccCCCCcccHHHHHHHHH-HcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHH
Confidence 444444443 5688999999944332 1333445678999999999999999999999999875 68777999999999
Q ss_pred HHhhccCCCCCCCcccHHHHHHHhc
Q 005884 647 QSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 647 keaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
+.+ |.+.+|.|++.+|+.++.
T Consensus 113 rl~----D~D~~Gkis~~~lkrvak 133 (172)
T KOG0028|consen 113 RLF----DDDKTGKISQRNLKRVAK 133 (172)
T ss_pred Hcc----cccCCCCcCHHHHHHHHH
Confidence 999 489999999999998863
No 40
>PLN02964 phosphatidylserine decarboxylase
Probab=97.73 E-value=0.00023 Score=82.15 Aligned_cols=116 Identities=13% Similarity=0.149 Sum_probs=80.3
Q ss_pred CCCCHHHHHHHHHhcCCCCCHHHHHHH---HHhhC--CCCccchHHHHHHHHhhcCCCChHHH---HHHHhhhhcCCCCC
Q 005884 548 DANAQSGMESGNEKDKANESNKEKTIM---EAAEV--KHSDVDMGKKGERNVETGKKEVFDKE---LLQAFRFFDRNQVG 619 (672)
Q Consensus 548 gaI~~sEL~~aLRsLG~epSEeEIeem---IsdiD--~dGkIDFdEFLaima~k~k~~d~eEE---LreAFkvFDkDgdG 619 (672)
..++..+|......-=...+..++.++ +..+| ++|.| +..++..+. ....++.+ +..+|..||.+++|
T Consensus 119 ~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i-Lg~ilrslG---~~~pte~e~~fi~~mf~~~D~DgdG 194 (644)
T PLN02964 119 NRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV-VGSIFVSCS---IEDPVETERSFARRILAIVDYDEDG 194 (644)
T ss_pred CCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC-HHHHHHHhC---CCCCCHHHHHHHHHHHHHhCCCCCC
Confidence 344555554433321123445555444 33344 46776 444333221 01223333 89999999999999
Q ss_pred ceeHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 620 YIRVEDLRLIIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 620 yIt~dDLKeILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
+|+..+|..+|..+|...+.+++..+|..+ |.+++|.|++++|+.+|.
T Consensus 195 ~IdfdEFl~lL~~lg~~~seEEL~eaFk~f----DkDgdG~Is~dEL~~vL~ 242 (644)
T PLN02964 195 QLSFSEFSDLIKAFGNLVAANKKEELFKAA----DLNGDGVVTIDELAALLA 242 (644)
T ss_pred eEcHHHHHHHHHHhccCCCHHHHHHHHHHh----CCCCCCcCCHHHHHHHHH
Confidence 999999999999999888999999999999 589999999999999874
No 41
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.57 E-value=9.1e-05 Score=53.18 Aligned_cols=29 Identities=38% Similarity=0.655 Sum_probs=26.4
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHHc
Q 005884 605 ELLQAFRFFDRNQVGYIRVEDLRLIIHNL 633 (672)
Q Consensus 605 ELreAFkvFDkDgdGyIt~dDLKeILktL 633 (672)
+|..+|+.||+|++|+|+.++|..+|..|
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 57899999999999999999999999875
No 42
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.55 E-value=0.0001 Score=52.57 Aligned_cols=30 Identities=43% Similarity=0.872 Sum_probs=27.0
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHH-HcC
Q 005884 605 ELLQAFRFFDRNQVGYIRVEDLRLIIH-NLG 634 (672)
Q Consensus 605 ELreAFkvFDkDgdGyIt~dDLKeILk-tLG 634 (672)
+|+.+|..||.|++|+|+..+|..+|. .||
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478999999999999999999999999 676
No 43
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.45 E-value=0.00021 Score=68.92 Aligned_cols=70 Identities=19% Similarity=0.254 Sum_probs=58.8
Q ss_pred CChHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 600 EVFDKELLQAFRFFDRNQVGYIRVEDLRLIIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 600 ~d~eEELreAFkvFDkDgdGyIt~dDLKeILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
.+...+++.||.+||+.++|.|+...+..+|+.||.+.|..+|...+..... +.-+--+|+|+.|+-|+.
T Consensus 7 ~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~--~~~~~~rl~FE~fLpm~q 76 (152)
T KOG0030|consen 7 PDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKR--REMNVKRLDFEEFLPMYQ 76 (152)
T ss_pred cchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCccc--chhhhhhhhHHHHHHHHH
Confidence 3445799999999999999999999999999999999999999998887731 111337899999998874
No 44
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.37 E-value=0.00051 Score=53.71 Aligned_cols=47 Identities=6% Similarity=-0.136 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHHHhcCCC-CCHHHHHHHHHhh--CCCCccchHHHHHHH
Q 005884 547 TDANAQSGMESGNEKDKAN-ESNKEKTIMEAAE--VKHSDVDMGKKGERN 593 (672)
Q Consensus 547 sgaI~~sEL~~aLRsLG~e-pSEeEIeemIsdi--D~dGkIDFdEFLaim 593 (672)
.|.|+..+|+.+|+.+|.. +++.++..|+..+ +++|.|+|.+|+.+|
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~ 51 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMM 51 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHH
Confidence 4556666666666666666 6666665555543 235555555555544
No 45
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.31 E-value=0.0012 Score=73.18 Aligned_cols=123 Identities=16% Similarity=0.118 Sum_probs=88.6
Q ss_pred CCCCCCCHHHHHHHHHh-cCCCCCHHHHHHHHHhhCCCCccchHHHHHHHHhhc-----CC------CChHHHHHHHhhh
Q 005884 545 GKTDANAQSGMESGNEK-DKANESNKEKTIMEAAEVKHSDVDMGKKGERNVETG-----KK------EVFDKELLQAFRF 612 (672)
Q Consensus 545 ~~sgaI~~sEL~~aLRs-LG~epSEeEIeemIsdiD~dGkIDFdEFLaima~k~-----k~------~d~eEELreAFkv 612 (672)
..+|.|+++.-..+|.. +|++++=--+..-+...+.+|.+.|..-+..+.... .. ....-.|.-+|+.
T Consensus 476 ~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr~ks~LetiF~~ 555 (631)
T KOG0377|consen 476 KKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLYRNKSSLETIFNI 555 (631)
T ss_pred hhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHHhchhhHHHHHHH
Confidence 45889999988888875 366555433333333345678888877655432110 00 0112356779999
Q ss_pred hcCCCCCceeHHHHHHHHHHc----CCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 613 FDRNQVGYIRVEDLRLIIHNL----GKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 613 FDkDgdGyIt~dDLKeILktL----GekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
+|.|++|.|+.++|+.+..-+ ...++.++|.++...+ |.++||.|++.||+..+.
T Consensus 556 iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~m----D~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 556 IDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSM----DLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred hccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhh----ccCCCCcccHHHHHHHHh
Confidence 999999999999999987765 4568999999999999 489999999999998754
No 46
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=97.29 E-value=0.0008 Score=68.74 Aligned_cols=72 Identities=17% Similarity=0.077 Sum_probs=61.7
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHhhC-C-CCccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCcee
Q 005884 545 GKTDANAQSGMESGNEKDKANESNKEKTIMEAAEV-K-HSDVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGYIR 622 (672)
Q Consensus 545 ~~sgaI~~sEL~~aLRsLG~epSEeEIeemIsdiD-~-dGkIDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGyIt 622 (672)
.+||+|+..||+.+|..||+.++.+-++.|++..+ . +|.|.|+.|+..+. ....|-++|+.+|.+..|.|+
T Consensus 136 D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv-------~L~~lt~~Fr~~D~~q~G~i~ 208 (221)
T KOG0037|consen 136 DRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCV-------VLQRLTEAFRRRDTAQQGSIT 208 (221)
T ss_pred CCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHH-------HHHHHHHHHHHhccccceeEE
Confidence 46899999999999999999999999999988876 3 78899999998663 245788899999999999987
Q ss_pred H
Q 005884 623 V 623 (672)
Q Consensus 623 ~ 623 (672)
.
T Consensus 209 ~ 209 (221)
T KOG0037|consen 209 I 209 (221)
T ss_pred E
Confidence 4
No 47
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.00087 Score=71.71 Aligned_cols=120 Identities=11% Similarity=0.045 Sum_probs=83.4
Q ss_pred CCCCCCCHHHHHHHHHhcCCC-CCHHHHHHHHHhh--CCCCccchHHHHHHHHhhcCCC-Ch---HHHHHHHhhhhcCCC
Q 005884 545 GKTDANAQSGMESGNEKDKAN-ESNKEKTIMEAAE--VKHSDVDMGKKGERNVETGKKE-VF---DKELLQAFRFFDRNQ 617 (672)
Q Consensus 545 ~~sgaI~~sEL~~aLRsLG~e-pSEeEIeemIsdi--D~dGkIDFdEFLaima~k~k~~-d~---eEELreAFkvFDkDg 617 (672)
.+.+..+..||..+|.=--+. +..--|..-|.++ +++|.|+|.||+.=|....... .+ ..+-.+.|..+|+|+
T Consensus 175 d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~Dknk 254 (325)
T KOG4223|consen 175 DGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNK 254 (325)
T ss_pred CCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCC
Confidence 346778888888877622110 1111223334444 5699999999998665433211 11 123446778889999
Q ss_pred CCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHH
Q 005884 618 VGYIRVEDLRLIIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVR 668 (672)
Q Consensus 618 dGyIt~dDLKeILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVk 668 (672)
+|+|+.++|+..+.--+......++.-||-++ |.|+||+++|+|.+.
T Consensus 255 DG~L~~dEl~~WI~P~~~d~A~~EA~hL~~ea----D~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 255 DGKLDGDELLDWILPSEQDHAKAEARHLLHEA----DEDKDGKLSKEEILE 301 (325)
T ss_pred CCccCHHHHhcccCCCCccHHHHHHHHHhhhh----ccCccccccHHHHhh
Confidence 99999999998776667777788888999888 589999999999875
No 48
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=97.03 E-value=0.00093 Score=59.26 Aligned_cols=49 Identities=6% Similarity=-0.177 Sum_probs=40.2
Q ss_pred CCCCCCHHHHHHHHHh-cCCCCCH-HHHHHHHHhh--CCCCccchHHHHHHHH
Q 005884 546 KTDANAQSGMESGNEK-DKANESN-KEKTIMEAAE--VKHSDVDMGKKGERNV 594 (672)
Q Consensus 546 ~sgaI~~sEL~~aLRs-LG~epSE-eEIeemIsdi--D~dGkIDFdEFLaima 594 (672)
+.|+|+..||+.+|.. ||..++. .++..||..+ +++|.|+|.+|+.+|.
T Consensus 22 ~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~ 74 (89)
T cd05022 22 GKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIG 74 (89)
T ss_pred CCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 5788999999999998 8877777 8888888765 4688899999988764
No 49
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=96.98 E-value=0.002 Score=51.90 Aligned_cols=59 Identities=17% Similarity=0.121 Sum_probs=43.6
Q ss_pred HHHHHhh--CCCCccchHHHHHHHHhhcC---CCChHHHHHHHhhhhcCCCCCceeHHHHHHHH
Q 005884 572 TIMEAAE--VKHSDVDMGKKGERNVETGK---KEVFDKELLQAFRFFDRNQVGYIRVEDLRLII 630 (672)
Q Consensus 572 eemIsdi--D~dGkIDFdEFLaima~k~k---~~d~eEELreAFkvFDkDgdGyIt~dDLKeIL 630 (672)
..++..+ +++|.|++.+|..++..... .......+..+|..+|.+++|+|+..++..+|
T Consensus 3 ~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 3 KEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 3445444 56889999999887765432 22344567778999999999999999998875
No 50
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=96.93 E-value=0.0018 Score=57.06 Aligned_cols=49 Identities=4% Similarity=-0.130 Sum_probs=42.8
Q ss_pred CCC-CCCHHHHHHHHHh-----cCCCCCHHHHHHHHHhhC--CCCccchHHHHHHHH
Q 005884 546 KTD-ANAQSGMESGNEK-----DKANESNKEKTIMEAAEV--KHSDVDMGKKGERNV 594 (672)
Q Consensus 546 ~sg-aI~~sEL~~aLRs-----LG~epSEeEIeemIsdiD--~dGkIDFdEFLaima 594 (672)
+.| .|+..||+.+|+. +|..+++.++..||..++ ++|.|+|.+|+.++.
T Consensus 22 gdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~ 78 (88)
T cd05027 22 GDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVA 78 (88)
T ss_pred CCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 477 5999999999999 999999999999998764 578999999998764
No 51
>PF14658 EF-hand_9: EF-hand domain
Probab=96.85 E-value=0.0024 Score=54.53 Aligned_cols=51 Identities=10% Similarity=-0.093 Sum_probs=45.6
Q ss_pred CCCCCCCHHHHHHHHHhcCC-CCCHHHHHHHHHhhCCC---CccchHHHHHHHHh
Q 005884 545 GKTDANAQSGMESGNEKDKA-NESNKEKTIMEAAEVKH---SDVDMGKKGERNVE 595 (672)
Q Consensus 545 ~~sgaI~~sEL~~aLRsLG~-epSEeEIeemIsdiD~d---GkIDFdEFLaima~ 595 (672)
..+|.|....|..+||++|. .|++.+|+.|.+.+|++ |.|+|+.|+.+|..
T Consensus 10 ~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 10 QKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 35899999999999999998 99999999999998763 67999999999863
No 52
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=96.76 E-value=0.0049 Score=56.32 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=54.5
Q ss_pred hHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 602 FDKELLQAFRFFDRNQVGYIRVEDLRLIIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 602 ~eEELreAFkvFDkDgdGyIt~dDLKeILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
....+..+|..+|. ++|+|+......+|..-| |+...+..|+.-+ |.+++|.+++.||+-+|-
T Consensus 8 e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~La----D~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 8 EKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLA----DIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-----SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhh----cCCCCCcCCHHHHHHHHH
Confidence 34678889999985 689999999999999876 6789999999998 589999999999998774
No 53
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.67 E-value=0.0063 Score=54.81 Aligned_cols=63 Identities=13% Similarity=0.371 Sum_probs=51.2
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHH-cC----CCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 604 KELLQAFRFFDRNQVGYIRVEDLRLIIHN-LG----KFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 604 EELreAFkvFDkDgdGyIt~dDLKeILkt-LG----ekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
..|...|..|- .+.|.++..+|+.+|.. |+ ..-....|..||..+ |.|+||.|+|.||+.++.
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~L----D~n~Dg~vdF~EF~~Lv~ 75 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDL----DDCRDGKVGFQSFFSLIA 75 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHh----CCCCCCcCcHHHHHHHHH
Confidence 35778888887 44679999999999965 43 334578899999999 589999999999998873
No 54
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=96.66 E-value=0.0037 Score=55.00 Aligned_cols=48 Identities=6% Similarity=-0.063 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHH---hcCCCCCHHHHHHHHHhhC--CCCccchHHHHHHHH
Q 005884 547 TDANAQSGMESGNE---KDKANESNKEKTIMEAAEV--KHSDVDMGKKGERNV 594 (672)
Q Consensus 547 sgaI~~sEL~~aLR---sLG~epSEeEIeemIsdiD--~dGkIDFdEFLaima 594 (672)
.|+|+..||+.+|+ .+|..++..++..|+..+| ++|.|+|.+|+.+|.
T Consensus 26 ~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~ 78 (88)
T cd05029 26 KNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLG 78 (88)
T ss_pred CCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Confidence 56899999999996 4798899999999998754 678899999988764
No 55
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.65 E-value=0.014 Score=72.10 Aligned_cols=118 Identities=14% Similarity=0.061 Sum_probs=89.9
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCC--HH-----HHHHHHHhhCC--CCccchHHHHHHHHhhc-CCCChHHHHHHHhhhhc
Q 005884 545 GKTDANAQSGMESGNEKDKANES--NK-----EKTIMEAAEVK--HSDVDMGKKGERNVETG-KKEVFDKELLQAFRFFD 614 (672)
Q Consensus 545 ~~sgaI~~sEL~~aLRsLG~epS--Ee-----EIeemIsdiD~--dGkIDFdEFLaima~k~-k~~d~eEELreAFkvFD 614 (672)
.++|.++..+|..+||+||++++ +. ++..+|..+|+ +|.|...+|+.+|..+- .+.....+|..||+.+|
T Consensus 2265 ek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL~ 2344 (2399)
T KOG0040|consen 2265 EKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDAFRALD 2344 (2399)
T ss_pred hhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHHHHHhh
Confidence 45899999999999999999873 22 67888887775 79999999999886442 34455679999999999
Q ss_pred CCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCC----CCCCcccHHHHHHHh
Q 005884 615 RNQVGYIRVEDLRLIIHNLGKFLSHRDVKELVQSALLESNT----GRDDRILYNKLVRMS 670 (672)
Q Consensus 615 kDgdGyIt~dDLKeILktLGekLS~EEVkeLIkeaD~esD~----DgDGkIsYeEFVkmM 670 (672)
. +.-||+..+|.. .||..++.-.|..+---.++ .-.+.|.|.+|++-+
T Consensus 2345 a-~~~yvtke~~~~-------~ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl 2396 (2399)
T KOG0040|consen 2345 A-GKPYVTKEELYQ-------NLTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSL 2396 (2399)
T ss_pred c-CCccccHHHHHh-------cCCHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHH
Confidence 9 889999998875 46778877766665321122 234678999998743
No 56
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.61 E-value=0.0038 Score=54.61 Aligned_cols=47 Identities=9% Similarity=-0.024 Sum_probs=28.7
Q ss_pred CCCCCHHHHHHHHHh-----cCCCCCHHHHHHHHHhhC--CCCccchHHHHHHH
Q 005884 547 TDANAQSGMESGNEK-----DKANESNKEKTIMEAAEV--KHSDVDMGKKGERN 593 (672)
Q Consensus 547 sgaI~~sEL~~aLRs-----LG~epSEeEIeemIsdiD--~dGkIDFdEFLaim 593 (672)
.|.|+..||+.+|+. +|..++..++..|+..++ ++|.|+|.+|+.+|
T Consensus 24 dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~ 77 (94)
T cd05031 24 KNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLV 77 (94)
T ss_pred CCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 466667777766665 455666666666665543 35566666666554
No 57
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.60 E-value=0.0038 Score=68.66 Aligned_cols=55 Identities=18% Similarity=0.302 Sum_probs=47.5
Q ss_pred CChHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 600 EVFDKELLQAFRFFDRNQVGYIRVEDLRLIIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 600 ~d~eEELreAFkvFDkDgdGyIt~dDLKeILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
......++.+|.+||.+++|+|+..+|.. +..||..+ |.|++|.|+|.+|..+|.
T Consensus 330 ~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~----D~d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 330 EAFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDAL----DLNHDGKITPEEMRAGLG 384 (391)
T ss_pred ChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHh----CCCCCCCCcHHHHHHHHH
Confidence 44567899999999999999999999831 57889998 589999999999999874
No 58
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=96.59 E-value=0.0016 Score=72.16 Aligned_cols=87 Identities=10% Similarity=0.131 Sum_probs=61.5
Q ss_pred hCCCCccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCceeHHHHHHHHHH------cCC----------CCCHHH
Q 005884 578 EVKHSDVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGYIRVEDLRLIIHN------LGK----------FLSHRD 641 (672)
Q Consensus 578 iD~dGkIDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGyIt~dDLKeILkt------LGe----------kLS~EE 641 (672)
++..|.|+|.+|+=+++. ...+...++-||++||.|++|-|+.++|..++.- +|. .+...-
T Consensus 210 lg~~GLIsfSdYiFLlTl---LS~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~ 286 (489)
T KOG2643|consen 210 LGESGLISFSDYIFLLTL---LSIPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEV 286 (489)
T ss_pred cCCCCeeeHHHHHHHHHH---HccCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhh
Confidence 455899999998776653 2344567889999999999999999998887632 222 111111
Q ss_pred HHHHHHHhhccCCCCCCCcccHHHHHHHh
Q 005884 642 VKELVQSALLESNTGRDDRILYNKLVRMS 670 (672)
Q Consensus 642 VkeLIkeaD~esD~DgDGkIsYeEFVkmM 670 (672)
-..|+..+- ..+++++++|++|+++|
T Consensus 287 nsaL~~yFF---G~rg~~kLs~deF~~F~ 312 (489)
T KOG2643|consen 287 NSALLTYFF---GKRGNGKLSIDEFLKFQ 312 (489)
T ss_pred hhhHHHHhh---ccCCCccccHHHHHHHH
Confidence 123444443 57899999999999876
No 59
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.42 E-value=0.0043 Score=76.25 Aligned_cols=63 Identities=19% Similarity=0.397 Sum_probs=56.6
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCH--H-----HHHHHHHHhhccCCCCCCCcccHHHHHHHh
Q 005884 604 KELLQAFRFFDRNQVGYIRVEDLRLIIHNLGKFLSH--R-----DVKELVQSALLESNTGRDDRILYNKLVRMS 670 (672)
Q Consensus 604 EELreAFkvFDkDgdGyIt~dDLKeILktLGekLS~--E-----EVkeLIkeaD~esD~DgDGkIsYeEFVkmM 670 (672)
.++..+|.+||++.+|.++...|+.||+.+|+.|+. + +++.+|..+ |++.+|+|+..+|+++|
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~v----DP~r~G~Vsl~dY~afm 2322 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLV----DPNRDGYVSLQDYMAFM 2322 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhc----CCCCcCcccHHHHHHHH
Confidence 467889999999999999999999999999988733 2 688999998 59999999999999987
No 60
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=96.28 E-value=0.011 Score=65.42 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=41.9
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCC-CCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHh
Q 005884 604 KELLQAFRFFDRNQVGYIRVEDLRLIIHNLGKF-LSHRDVKELVQSALLESNTGRDDRILYNKLVRMS 670 (672)
Q Consensus 604 EELreAFkvFDkDgdGyIt~dDLKeILktLGek-LS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM 670 (672)
..++..|..||.+++|+|+..+|...|..|+.+ ....-+..++..+ |.+.+|.++|.+|.+.|
T Consensus 14 ~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~----d~~~dg~vDy~eF~~Y~ 77 (463)
T KOG0036|consen 14 IRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAM----DANRDGRVDYSEFKRYL 77 (463)
T ss_pred HHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhc----ccCcCCcccHHHHHHHH
Confidence 456667777777777777777777777776555 3444455566666 46777777777777655
No 61
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=96.21 E-value=0.011 Score=51.48 Aligned_cols=49 Identities=6% Similarity=-0.079 Sum_probs=29.1
Q ss_pred CCC-CCCHHHHHHHHHh-cC----CCCCHHHHHHHHHhhC--CCCccchHHHHHHHH
Q 005884 546 KTD-ANAQSGMESGNEK-DK----ANESNKEKTIMEAAEV--KHSDVDMGKKGERNV 594 (672)
Q Consensus 546 ~sg-aI~~sEL~~aLRs-LG----~epSEeEIeemIsdiD--~dGkIDFdEFLaima 594 (672)
+.| .|+..||+.+|+. +| ..++..++..||..++ ++|.|+|.+|+.+|.
T Consensus 23 g~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~ 79 (92)
T cd05025 23 GDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVA 79 (92)
T ss_pred CCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 356 3777777777764 33 3456666666666543 355666666666543
No 62
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=96.14 E-value=0.016 Score=46.12 Aligned_cols=45 Identities=7% Similarity=-0.149 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHhhC--CCCccchHHHHHHH
Q 005884 547 TDANAQSGMESGNEKDKANESNKEKTIMEAAEV--KHSDVDMGKKGERN 593 (672)
Q Consensus 547 sgaI~~sEL~~aLRsLG~epSEeEIeemIsdiD--~dGkIDFdEFLaim 593 (672)
+|.|+..||..+|+.+|+ +..++..|+..++ .+|.|+|.+|+.++
T Consensus 13 ~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~ 59 (67)
T cd00052 13 DGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAM 59 (67)
T ss_pred CCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHH
Confidence 455555666665555553 4445555554433 24555555555543
No 63
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.01 E-value=0.0081 Score=41.74 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=20.8
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHHH
Q 005884 606 LLQAFRFFDRNQVGYIRVEDLRLII 630 (672)
Q Consensus 606 LreAFkvFDkDgdGyIt~dDLKeIL 630 (672)
|..+|..+|.|++|.|+..||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999888764
No 64
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=96.01 E-value=0.035 Score=41.43 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=39.3
Q ss_pred CCCCccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCceeHHHHHHHH
Q 005884 579 VKHSDVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGYIRVEDLRLII 630 (672)
Q Consensus 579 D~dGkIDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGyIt~dDLKeIL 630 (672)
+.+|.|++.+|..++.. +........+..+|..||.+++|.|+..++..+|
T Consensus 12 ~~~g~l~~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 12 DGDGTISADELKAALKS-LGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred CCCCcCcHHHHHHHHHH-hCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 45788899998887653 3344566778889999999999999998887765
No 65
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=95.99 E-value=0.008 Score=43.22 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=24.0
Q ss_pred HHHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 641 DVKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 641 EVkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
+++.+|+.+ |.|++|.|+|+||+.+|.
T Consensus 1 E~~~~F~~~----D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREF----DKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHH----STTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHH----CCCCCCcCCHHHHHHHHH
Confidence 578899999 599999999999999873
No 66
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=0.019 Score=61.86 Aligned_cols=120 Identities=11% Similarity=0.063 Sum_probs=78.4
Q ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHh--hCCCCccchHHHHHHHHhhc------CCCC---hHH----HHHHHhh
Q 005884 547 TDANAQSGMESGNEKDKANESNKEKTIMEAA--EVKHSDVDMGKKGERNVETG------KKEV---FDK----ELLQAFR 611 (672)
Q Consensus 547 sgaI~~sEL~~aLRsLG~epSEeEIeemIsd--iD~dGkIDFdEFLaima~k~------k~~d---~eE----ELreAFk 611 (672)
.|.|+.+||..-+...-......+...-+.. .+.+|.|.|.+++..+.... .... ... .=.+-|+
T Consensus 91 Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk 170 (325)
T KOG4223|consen 91 DGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDEERFK 170 (325)
T ss_pred CCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchhcHHHHHHHHHHHHHHh
Confidence 5678888888765532222222222222322 24689999999998776321 1111 111 2345899
Q ss_pred hhcCCCCCceeHHHHHHHHHHcC-CCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHh
Q 005884 612 FFDRNQVGYIRVEDLRLIIHNLG-KFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMS 670 (672)
Q Consensus 612 vFDkDgdGyIt~dDLKeILktLG-ekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM 670 (672)
.-|.|++|.++..+|-.+|+--- ..|..-=|.+-|..+ |.|+||.|+|+||+.=|
T Consensus 171 ~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~----Dkn~DG~I~~eEfigd~ 226 (325)
T KOG4223|consen 171 AADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDI----DKNGDGKISLEEFIGDL 226 (325)
T ss_pred hcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhc----ccCCCCceeHHHHHhHH
Confidence 99999999999999999987532 233444456667777 58999999999998643
No 67
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=95.96 E-value=0.036 Score=48.62 Aligned_cols=59 Identities=12% Similarity=0.164 Sum_probs=46.6
Q ss_pred CCCCccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc-----CCCCCHH
Q 005884 579 VKHSDVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGYIRVEDLRLIIHNL-----GKFLSHR 640 (672)
Q Consensus 579 D~dGkIDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGyIt~dDLKeILktL-----GekLS~E 640 (672)
+++|.|++.+|..++.. . ..+..++..+|..+|.+++|+|+..+|..+|..+ |..++.+
T Consensus 22 d~~G~Is~~el~~~l~~-~--~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~~~~~~ 85 (96)
T smart00027 22 NQDGTVTGAQAKPILLK-S--GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGYPIPAS 85 (96)
T ss_pred CCCCeEeHHHHHHHHHH-c--CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCCCCCcc
Confidence 46889999999888754 2 2456789999999999999999999999888654 6666553
No 68
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=95.68 E-value=0.02 Score=50.11 Aligned_cols=49 Identities=6% Similarity=-0.126 Sum_probs=36.2
Q ss_pred CCCCCCHHHHHHHHH-hcCCCCC----HHHHHHHHHhhC--CCCccchHHHHHHHH
Q 005884 546 KTDANAQSGMESGNE-KDKANES----NKEKTIMEAAEV--KHSDVDMGKKGERNV 594 (672)
Q Consensus 546 ~sgaI~~sEL~~aLR-sLG~epS----EeEIeemIsdiD--~dGkIDFdEFLaima 594 (672)
.++.|+..||+.+|. .+|..++ ..++..||..+| ++|.|+|.+|+.+|.
T Consensus 23 ~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~ 78 (88)
T cd05030 23 HPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVI 78 (88)
T ss_pred CcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 367888999999886 5665565 777888877754 467788888877664
No 69
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=95.27 E-value=0.039 Score=62.72 Aligned_cols=63 Identities=24% Similarity=0.393 Sum_probs=54.2
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCC---CHHHHHHHHHHhhccCCCCCCCcccHHHHHHHh
Q 005884 603 DKELLQAFRFFDRNQVGYIRVEDLRLIIHNLGKFL---SHRDVKELVQSALLESNTGRDDRILYNKLVRMS 670 (672)
Q Consensus 603 eEELreAFkvFDkDgdGyIt~dDLKeILktLGekL---S~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM 670 (672)
...|...|..+| ++.|||+..+|..+|...+..+ ..++++.++..+ +++.+|.|+|++|+.++
T Consensus 18 l~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~----~~~~~g~v~fe~f~~~~ 83 (627)
T KOG0046|consen 18 LRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEV----GVDADGRVEFEEFVGIF 83 (627)
T ss_pred HHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhcc----CCCcCCccCHHHHHHHH
Confidence 357889999999 9999999999999999987554 467888888887 58999999999999854
No 70
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=95.24 E-value=0.08 Score=60.01 Aligned_cols=111 Identities=14% Similarity=0.061 Sum_probs=70.9
Q ss_pred CCHHHHH-HHHHhcCCCCCHHHHHHHHHhh---CCCCccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCceeHHH
Q 005884 550 NAQSGME-SGNEKDKANESNKEKTIMEAAE---VKHSDVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGYIRVED 625 (672)
Q Consensus 550 I~~sEL~-~aLRsLG~epSEeEIeemIsdi---D~dGkIDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGyIt~dD 625 (672)
.+..++. ..|--++.+-...++..+++.+ ..+|.|+|++|+.+-. .+. .++.-.+.||..||+.++|.++.++
T Consensus 53 mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~-~lC--~pDal~~~aFqlFDr~~~~~vs~~~ 129 (694)
T KOG0751|consen 53 MTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFES-VLC--APDALFEVAFQLFDRLGNGEVSFED 129 (694)
T ss_pred cCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHh-hcc--CchHHHHHHHHHhcccCCCceehHH
Confidence 3334333 3334445666667777776553 3599999999988532 122 2356788899999999999999999
Q ss_pred HHHHHHHcCC------CCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHh
Q 005884 626 LRLIIHNLGK------FLSHRDVKELVQSALLESNTGRDDRILYNKLVRMS 670 (672)
Q Consensus 626 LKeILktLGe------kLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM 670 (672)
+..|+..+.+ ..+.+-|...+... ..-.++|.+|.+++
T Consensus 130 ~~~if~~t~l~~~~~f~~d~efI~~~Fg~~-------~~r~~ny~~f~Q~l 173 (694)
T KOG0751|consen 130 VADIFGQTNLHHHIPFNWDSEFIKLHFGDI-------RKRHLNYAEFTQFL 173 (694)
T ss_pred HHHHHhccccccCCCccCCcchHHHHhhhH-------HHHhccHHHHHHHH
Confidence 9999987532 12333333333222 23456777776654
No 71
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=95.21 E-value=0.073 Score=47.01 Aligned_cols=56 Identities=9% Similarity=0.048 Sum_probs=41.3
Q ss_pred hCCCC-ccchHHHHHHHHhhc----CCCChHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc
Q 005884 578 EVKHS-DVDMGKKGERNVETG----KKEVFDKELLQAFRFFDRNQVGYIRVEDLRLIIHNL 633 (672)
Q Consensus 578 iD~dG-kIDFdEFLaima~k~----k~~d~eEELreAFkvFDkDgdGyIt~dDLKeILktL 633 (672)
.+++| .|+..+|..++...+ ........|..+|..+|.|++|.|+..++..+|..|
T Consensus 22 ~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 22 KEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred cCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 34676 488888888775421 223356688888888899999999998888888765
No 72
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=95.21 E-value=0.023 Score=36.50 Aligned_cols=28 Identities=36% Similarity=0.686 Sum_probs=23.9
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHHHHHc
Q 005884 606 LLQAFRFFDRNQVGYIRVEDLRLIIHNL 633 (672)
Q Consensus 606 LreAFkvFDkDgdGyIt~dDLKeILktL 633 (672)
++.+|..||.+++|+|+..+|..+|..+
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~~ 29 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKAL 29 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHhC
Confidence 6778999999999999999999888753
No 73
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=95.19 E-value=0.077 Score=45.45 Aligned_cols=55 Identities=11% Similarity=0.082 Sum_probs=39.0
Q ss_pred CCCCccchHHHHHHHHhhcC----CCChHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc
Q 005884 579 VKHSDVDMGKKGERNVETGK----KEVFDKELLQAFRFFDRNQVGYIRVEDLRLIIHNL 633 (672)
Q Consensus 579 D~dGkIDFdEFLaima~k~k----~~d~eEELreAFkvFDkDgdGyIt~dDLKeILktL 633 (672)
+++|.|++.+|..++...+. .......+..+|..||.+++|+|+..++..+|..+
T Consensus 22 ~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 22 GDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred CCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 46678888888877643221 11246678888888888888888888888877664
No 74
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=94.83 E-value=0.036 Score=60.10 Aligned_cols=94 Identities=17% Similarity=0.058 Sum_probs=70.6
Q ss_pred HHHHHHhh--CCCCccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCceeHHHHHHHHHH-cCCCCCHHHHHHHHH
Q 005884 571 KTIMEAAE--VKHSDVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGYIRVEDLRLIIHN-LGKFLSHRDVKELVQ 647 (672)
Q Consensus 571 IeemIsdi--D~dGkIDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGyIt~dDLKeILkt-LGekLS~EEVkeLIk 647 (672)
+..|+.-+ +++|.+||-+.....+-.-+...+..-|.-||+.|+.+.+|++...+|..||.. +|. ..-.+-.++.
T Consensus 261 l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv--~~l~v~~lf~ 338 (412)
T KOG4666|consen 261 LAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGV--EVLRVPVLFP 338 (412)
T ss_pred hhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCc--ceeeccccch
Confidence 34444443 458899999976544433356677888999999999999999999999999986 453 3334556788
Q ss_pred HhhccCCCCCCCcccHHHHHHHh
Q 005884 648 SALLESNTGRDDRILYNKLVRMS 670 (672)
Q Consensus 648 eaD~esD~DgDGkIsYeEFVkmM 670 (672)
.++ ...+|+|.|.+|..++
T Consensus 339 ~i~----q~d~~ki~~~~f~~fa 357 (412)
T KOG4666|consen 339 SIE----QKDDPKIYASNFRKFA 357 (412)
T ss_pred hhh----cccCcceeHHHHHHHH
Confidence 874 5668999999998876
No 75
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=94.56 E-value=0.59 Score=47.08 Aligned_cols=97 Identities=11% Similarity=-0.010 Sum_probs=71.1
Q ss_pred CCHHHHHHHHHh---h--C-CCCccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCc-eeHHHHHHHHHHcCCCCC
Q 005884 566 ESNKEKTIMEAA---E--V-KHSDVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGY-IRVEDLRLIIHNLGKFLS 638 (672)
Q Consensus 566 pSEeEIeemIsd---i--D-~dGkIDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGy-It~dDLKeILktLGekLS 638 (672)
.+..||..+... + . ..|.|+.++|+.+.....+ .-..++|..||.+++|. |+..++-++|...-..-+
T Consensus 27 fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~~N-----p~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~ 101 (187)
T KOG0034|consen 27 FSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELALN-----PLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKAS 101 (187)
T ss_pred cCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcC-----cHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCcc
Confidence 557777766433 2 3 5789999999998743222 23567888999999999 999999999988765545
Q ss_pred HH-HHHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 639 HR-DVKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 639 ~E-EVkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
.. -++-.++-. |.+++|.|+.++|..+|.
T Consensus 102 ~~~Kl~faF~vY----D~~~~G~I~reel~~iv~ 131 (187)
T KOG0034|consen 102 KREKLRFAFRVY----DLDGDGFISREELKQILR 131 (187)
T ss_pred HHHHHHHHHHHh----cCCCCCcCcHHHHHHHHH
Confidence 54 444445444 799999999999988763
No 76
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=94.29 E-value=0.021 Score=52.63 Aligned_cols=63 Identities=16% Similarity=0.248 Sum_probs=46.0
Q ss_pred CChHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHH
Q 005884 600 EVFDKELLQAFRFFDRNQVGYIRVEDLRLIIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVR 668 (672)
Q Consensus 600 ~d~eEELreAFkvFDkDgdGyIt~dDLKeILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVk 668 (672)
......+..-|..+|.|++|+|+..||..+...| .....=+..++..+| .|+||.|++.||..
T Consensus 50 ~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD----~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 50 SECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCD----VNKDGKISLDEWCN 112 (113)
T ss_dssp GGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-----TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcC----CCCCCCCCHHHHcc
Confidence 3445678889999999999999999999887655 223334788999994 89999999999975
No 77
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=93.94 E-value=0.15 Score=41.83 Aligned_cols=47 Identities=6% Similarity=0.181 Sum_probs=37.7
Q ss_pred eeHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 621 IRVEDLRLIIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 621 It~dDLKeILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
++..+++.+|+.+...++...+..||+.+| .+++|.+...||..++.
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D----~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECD----KSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-----SSSSSEBEHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhc----ccCCCCccHHHHHHHHH
Confidence 678899999999999999999999999995 78899999988887764
No 78
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=93.70 E-value=0.22 Score=46.40 Aligned_cols=57 Identities=9% Similarity=0.003 Sum_probs=45.4
Q ss_pred HHHHHHHHhh--CCCCccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCceeHHHHHHHH
Q 005884 569 KEKTIMEAAE--VKHSDVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGYIRVEDLRLII 630 (672)
Q Consensus 569 eEIeemIsdi--D~dGkIDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGyIt~dDLKeIL 630 (672)
.+|.-++..+ +++|.|+..|+..++ .......+...|..+|.|++|+|+..++..+|
T Consensus 48 ~~l~w~F~~lD~d~DG~Ls~~EL~~~~-----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 48 DPVGWMFNQLDGNYDGKLSHHELAPIR-----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHH-----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 4455555554 568999999998764 22346678889999999999999999999998
No 79
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=93.67 E-value=0.17 Score=56.70 Aligned_cols=115 Identities=11% Similarity=0.019 Sum_probs=74.7
Q ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHh----hCC-CCccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCce
Q 005884 547 TDANAQSGMESGNEKDKANESNKEKTIMEAA----EVK-HSDVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGYI 621 (672)
Q Consensus 547 sgaI~~sEL~~aLRsLG~epSEeEIeemIsd----iD~-dGkIDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGyI 621 (672)
+|.|+..++..+|-......++. ...++.. ... +-.|+|.+|.+++....+. ..+.-|...|= .-.+-|
T Consensus 332 ~g~Ise~DFA~~lL~~a~~n~~~-k~~~lkrvk~kf~~~~~gISl~Ef~~Ff~Fl~~l----~dfd~Al~fy~-~Ag~~i 405 (489)
T KOG2643|consen 332 SGAISEVDFAELLLAYAGVNSKK-KHKYLKRVKEKFKDDGKGISLQEFKAFFRFLNNL----NDFDIALRFYH-MAGASI 405 (489)
T ss_pred ccccCHHHHHHHHHHHcccchHh-HHHHHHHHHHhccCCCCCcCHHHHHHHHHHHhhh----hHHHHHHHHHH-HcCCCC
Confidence 58899998888766553322222 1223322 333 4469999999876533222 12222222221 235789
Q ss_pred eHHHHHHHHHH-cCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 622 RVEDLRLIIHN-LGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 622 t~dDLKeILkt-LGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
+..+|+++... .|..||+.-+.-+|..+ |.|+||.|++.||+.+|.
T Consensus 406 ~~~~f~raa~~vtGveLSdhVvdvvF~IF----D~N~Dg~LS~~EFl~Vmk 452 (489)
T KOG2643|consen 406 DEKTFQRAAKVVTGVELSDHVVDVVFTIF----DENNDGTLSHKEFLAVMK 452 (489)
T ss_pred CHHHHHHHHHHhcCcccccceeeeEEEEE----ccCCCCcccHHHHHHHHH
Confidence 99999999987 49999987555555555 689999999999999883
No 80
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.63 E-value=0.25 Score=47.16 Aligned_cols=69 Identities=16% Similarity=0.295 Sum_probs=52.2
Q ss_pred hHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc------CC----CCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHh
Q 005884 602 FDKELLQAFRFFDRNQVGYIRVEDLRLIIHNL------GK----FLSHRDVKELVQSALLESNTGRDDRILYNKLVRMS 670 (672)
Q Consensus 602 ~eEELreAFkvFDkDgdGyIt~dDLKeILktL------Ge----kLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM 670 (672)
+++--...|.+.|.|++|+|.--+|..++.-. |. -.|..++..||..+..--|.++||.|+|.+|++..
T Consensus 65 peqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~q 143 (144)
T KOG4065|consen 65 PEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKRQ 143 (144)
T ss_pred HHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhhc
Confidence 33444558999999999999988888777533 32 25778999999987543357799999999998753
No 81
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=93.43 E-value=0.43 Score=42.30 Aligned_cols=56 Identities=14% Similarity=0.020 Sum_probs=41.6
Q ss_pred CCCC-ccchHHHHHHHHhhc----CCCChHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcC
Q 005884 579 VKHS-DVDMGKKGERNVETG----KKEVFDKELLQAFRFFDRNQVGYIRVEDLRLIIHNLG 634 (672)
Q Consensus 579 D~dG-kIDFdEFLaima~k~----k~~d~eEELreAFkvFDkDgdGyIt~dDLKeILktLG 634 (672)
+++| .|+.+||..++...+ ........+..+|..+|.|++|.|+..++..+|..|.
T Consensus 22 dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 22 DGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred CCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 3444 788888888876543 2233456788899999999999999999988887653
No 82
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=93.30 E-value=0.27 Score=55.40 Aligned_cols=114 Identities=11% Similarity=0.130 Sum_probs=76.6
Q ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHhh------CCCCccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCc
Q 005884 547 TDANAQSGMESGNEKDKANESNKEKTIMEAAE------VKHSDVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGY 620 (672)
Q Consensus 547 sgaI~~sEL~~aLRsLG~epSEeEIeemIsdi------D~dGkIDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGy 620 (672)
.+.|+..+|...-... .+.-=++.+++++ -.+|.|+|..|+.++.. .....+..-|.-.|+.+|.+++|+
T Consensus 292 d~lidk~~L~ry~d~t---lt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA-~e~k~t~~SleYwFrclDld~~G~ 367 (493)
T KOG2562|consen 292 DGLIDKEDLKRYGDHT---LTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILA-EEDKDTPASLEYWFRCLDLDGDGI 367 (493)
T ss_pred ccccCHHHHHHHhccc---hhhHHHHHHHhhccccceeeecCcccHHHHHHHHHH-hccCCCccchhhheeeeeccCCCc
Confidence 4556666665543322 2334455666643 23899999999986542 345566678999999999999999
Q ss_pred eeHHHHHHHHHHc-------C-CCCCHHHH-HHHHHHhhccCCCCCCCcccHHHHHH
Q 005884 621 IRVEDLRLIIHNL-------G-KFLSHRDV-KELVQSALLESNTGRDDRILYNKLVR 668 (672)
Q Consensus 621 It~dDLKeILktL-------G-ekLS~EEV-keLIkeaD~esD~DgDGkIsYeEFVk 668 (672)
|+..+|+-++... | ..++-+++ .+|+..+ -+...+.|+..+|..
T Consensus 368 Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMv----kP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 368 LTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMV----KPEDENKITLQDLKG 420 (493)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHh----CccCCCceeHHHHhh
Confidence 9999988766432 3 34454544 3455555 256688999999875
No 83
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=93.06 E-value=0.26 Score=50.72 Aligned_cols=87 Identities=13% Similarity=-0.029 Sum_probs=64.8
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHhhC--CCCccchHHHHHHHHhhcCCCC-hHHHHHHHhhh--hcCCCCC
Q 005884 545 GKTDANAQSGMESGNEKDKANESNKEKTIMEAAEV--KHSDVDMGKKGERNVETGKKEV-FDKELLQAFRF--FDRNQVG 619 (672)
Q Consensus 545 ~~sgaI~~sEL~~aLRsLG~epSEeEIeemIsdiD--~dGkIDFdEFLaima~k~k~~d-~eEELreAFkv--FDkDgdG 619 (672)
.+.|.|+..||+..|..||...|---+.+||..++ .+|+|+|-+|+-++.....+.. ....+..+=+. .|....|
T Consensus 111 ~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~ds~~~~LAr~~eVDVskeG 190 (244)
T KOG0041|consen 111 DRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQEDSGLLRLARLSEVDVSKEG 190 (244)
T ss_pred cccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccccchHHHHHHHhcccchhhhh
Confidence 46789999999999999999888888999999875 5899999999988765443321 22334444443 7888888
Q ss_pred ceeHHHHHHHHH
Q 005884 620 YIRVEDLRLIIH 631 (672)
Q Consensus 620 yIt~dDLKeILk 631 (672)
......|.++=-
T Consensus 191 V~GAknFFeAKI 202 (244)
T KOG0041|consen 191 VSGAKNFFEAKI 202 (244)
T ss_pred hhhHHHHHHHHH
Confidence 888887766543
No 84
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=92.45 E-value=0.33 Score=53.78 Aligned_cols=57 Identities=12% Similarity=-0.008 Sum_probs=48.5
Q ss_pred cCCCCCHHHHHHHHHhh--CCCCccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCceeHHHHHHHHHH
Q 005884 562 DKANESNKEKTIMEAAE--VKHSDVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGYIRVEDLRLIIHN 632 (672)
Q Consensus 562 LG~epSEeEIeemIsdi--D~dGkIDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGyIt~dDLKeILkt 632 (672)
.|+.+....+..++..+ +++|.|++.+|+. +..+|..||.|++|.|+..+|..+|..
T Consensus 327 ~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 327 EGGEAFTHAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hccChhhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 57788888888888765 5689999999953 456899999999999999999998875
No 85
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=92.36 E-value=0.16 Score=35.28 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=21.5
Q ss_pred HHHHHHHhhccCCCCCCCcccHHHHHHHh
Q 005884 642 VKELVQSALLESNTGRDDRILYNKLVRMS 670 (672)
Q Consensus 642 VkeLIkeaD~esD~DgDGkIsYeEFVkmM 670 (672)
|+.+|..+ |.|+||.|++.||..+|
T Consensus 1 l~~~F~~~----D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQF----DTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHH----TTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHH----cCCCCCcCCHHHHHHHC
Confidence 46788888 58999999999999875
No 86
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=92.27 E-value=0.33 Score=41.43 Aligned_cols=65 Identities=18% Similarity=0.382 Sum_probs=50.4
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHHc-CC-CCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHh
Q 005884 605 ELLQAFRFFDRNQVGYIRVEDLRLIIHNL-GK-FLSHRDVKELVQSALLESNTGRDDRILYNKLVRMS 670 (672)
Q Consensus 605 ELreAFkvFDkDgdGyIt~dDLKeILktL-Ge-kLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM 670 (672)
+|..+|..|-. +.++|+..+|..+|... |. .++..++..||.........-..+.|++..|+.+|
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL 67 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFL 67 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHH
Confidence 47788999955 89999999999999864 55 57999999999997410001146899999999887
No 87
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=91.97 E-value=0.052 Score=46.76 Aligned_cols=61 Identities=15% Similarity=0.155 Sum_probs=43.4
Q ss_pred ChHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCC---CCCCcccHHHHHHH
Q 005884 601 VFDKELLQAFRFFDRNQVGYIRVEDLRLIIHNLGKFLSHRDVKELVQSALLESNT---GRDDRILYNKLVRM 669 (672)
Q Consensus 601 d~eEELreAFkvFDkDgdGyIt~dDLKeILktLGekLS~EEVkeLIkeaD~esD~---DgDGkIsYeEFVkm 669 (672)
.+.++|+.+|+.+ .++.+||+..+|++.| +.++++.++..|..-.++ ..-|.++|..|+.-
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l-------~pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSL-------TPEQAEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHc-------CcHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 4567899999999 8899999999999874 455677777776310111 11278999999863
No 88
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.51 E-value=0.34 Score=57.47 Aligned_cols=64 Identities=14% Similarity=0.272 Sum_probs=53.7
Q ss_pred ChHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHh
Q 005884 601 VFDKELLQAFRFFDRNQVGYIRVEDLRLIIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMS 670 (672)
Q Consensus 601 d~eEELreAFkvFDkDgdGyIt~dDLKeILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM 670 (672)
.....+++.|+.+|+...|||+-..-+.+|..-| |++.++-.|+... |.|+||+++.++|+-.|
T Consensus 192 ~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~Ls----Dvd~DGkL~~dEfilam 255 (1118)
T KOG1029|consen 192 HNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLS----DVDGDGKLSADEFILAM 255 (1118)
T ss_pred hhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeee----ccCCCCcccHHHHHHHH
Confidence 3456899999999999999999999999998766 5677777766555 69999999999998765
No 89
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=89.41 E-value=0.76 Score=52.02 Aligned_cols=59 Identities=22% Similarity=0.267 Sum_probs=44.0
Q ss_pred HhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHh
Q 005884 609 AFRFFDRNQVGYIRVEDLRLIIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMS 670 (672)
Q Consensus 609 AFkvFDkDgdGyIt~dDLKeILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM 670 (672)
-|-.+|.||+|+|..++|.+.-. ..++..-|+.||.++-...-.-.+|+|+|.+|+.++
T Consensus 283 kFweLD~Dhd~lidk~~L~ry~d---~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~Fi 341 (493)
T KOG2562|consen 283 KFWELDTDHDGLIDKEDLKRYGD---HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFI 341 (493)
T ss_pred HHhhhccccccccCHHHHHHHhc---cchhhHHHHHHHhhccccceeeecCcccHHHHHHHH
Confidence 37788999999999999987533 236777888899844211124568999999999865
No 90
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=89.36 E-value=0.22 Score=52.60 Aligned_cols=62 Identities=13% Similarity=0.232 Sum_probs=46.1
Q ss_pred hHHHHHHHhhhhcCCCCCceeHHHHHHHHH-HcCCCC--CHHHHHHHHHHhhccCCCCCCCcccHHHHH
Q 005884 602 FDKELLQAFRFFDRNQVGYIRVEDLRLIIH-NLGKFL--SHRDVKELVQSALLESNTGRDDRILYNKLV 667 (672)
Q Consensus 602 ~eEELreAFkvFDkDgdGyIt~dDLKeILk-tLGekL--S~EEVkeLIkeaD~esD~DgDGkIsYeEFV 667 (672)
..+.|..+|.-.|.|.+|+|++.+|++.++ .+.+++ +.++-+-.|..+ |+++||.|+|++|.
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraV----DpdgDGhvsWdEyk 163 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAV----DPDGDGHVSWDEYK 163 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeee----CCCCCCceehhhhh
Confidence 457899999999999999999999998654 343332 222333345555 69999999999994
No 91
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=89.24 E-value=1.1 Score=40.58 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=21.8
Q ss_pred hHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc
Q 005884 602 FDKELLQAFRFFDRNQVGYIRVEDLRLIIHNL 633 (672)
Q Consensus 602 ~eEELreAFkvFDkDgdGyIt~dDLKeILktL 633 (672)
.+..|..+|..+|.|++|.|+..++-.++..|
T Consensus 46 d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 46 DPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred CHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 45566777777777777777777766666654
No 92
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=87.37 E-value=0.73 Score=32.79 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=22.5
Q ss_pred HHHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 641 DVKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 641 EVkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
+++.+|..+ |.+++|.|++.+|..+|.
T Consensus 1 ~l~~~F~~~----D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMF----DKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-----TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHH----CCCCCCcCcHHHHHHHHH
Confidence 467788888 589999999999999874
No 93
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=86.87 E-value=0.75 Score=29.25 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=21.6
Q ss_pred HHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 642 VKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 642 VkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
+..++..+ +.+++|.|+|.+|+.++.
T Consensus 2 ~~~~f~~~----d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLF----DKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHH----CCCCCCcEeHHHHHHHHH
Confidence 56788888 478899999999998863
No 94
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=85.46 E-value=2 Score=49.38 Aligned_cols=78 Identities=19% Similarity=0.160 Sum_probs=58.4
Q ss_pred ccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCccc
Q 005884 583 DVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGYIRVEDLRLIIHNLGKFLSHRDVKELVQSALLESNTGRDDRIL 662 (672)
Q Consensus 583 kIDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGyIt~dDLKeILktLGekLS~EEVkeLIkeaD~esD~DgDGkIs 662 (672)
.++|.+|..++... ..+.-++||+..|..++|+|+.-+++.+|.+.-.++....|+..+-.+- ..+..-+++
T Consensus 163 ~~ny~~f~Q~lh~~-----~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~va---gg~~~H~vS 234 (694)
T KOG0751|consen 163 HLNYAEFTQFLHEF-----QLEHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVA---GGNDSHQVS 234 (694)
T ss_pred hccHHHHHHHHHHH-----HHHHHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhc---CCCCccccc
Confidence 37888888776432 2456889999999999999999999999999877777788888776662 233344666
Q ss_pred HHHHHH
Q 005884 663 YNKLVR 668 (672)
Q Consensus 663 YeEFVk 668 (672)
|..|..
T Consensus 235 f~yf~a 240 (694)
T KOG0751|consen 235 FSYFNA 240 (694)
T ss_pred hHHHHH
Confidence 665543
No 95
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=81.95 E-value=4.5 Score=49.22 Aligned_cols=83 Identities=11% Similarity=0.005 Sum_probs=67.0
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCHH-----HHHHHHHhhCCC--CccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCC
Q 005884 545 GKTDANAQSGMESGNEKDKANESNK-----EKTIMEAAEVKH--SDVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQ 617 (672)
Q Consensus 545 ~~sgaI~~sEL~~aLRsLG~epSEe-----EIeemIsdiD~d--GkIDFdEFLaima~k~k~~d~eEELreAFkvFDkDg 617 (672)
-..++.+..++..+|-.+|++...+ ++..|++..|.. |.+.|.+|...|.......+....++.+|..+=.+.
T Consensus 759 ~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~~~r~i~s~~d~~ktk 838 (890)
T KOG0035|consen 759 IDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDTELRAILAFEDWAKTK 838 (890)
T ss_pred hhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcHHHHHHHHHHHHHcch
Confidence 4477999999999999999988752 333444445543 789999999999888888888899999999997766
Q ss_pred CCceeHHHHHH
Q 005884 618 VGYIRVEDLRL 628 (672)
Q Consensus 618 dGyIt~dDLKe 628 (672)
. ||..++|.+
T Consensus 839 ~-~lL~eEL~~ 848 (890)
T KOG0035|consen 839 A-YLLLEELVR 848 (890)
T ss_pred h-HHHHHHHHh
Confidence 6 899888887
No 96
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=80.63 E-value=2.6 Score=44.85 Aligned_cols=92 Identities=12% Similarity=0.155 Sum_probs=64.6
Q ss_pred HHHHhhCC--CCccchHHHHHHHHhh---cCCCCh-----HHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHH
Q 005884 573 IMEAAEVK--HSDVDMGKKGERNVET---GKKEVF-----DKELLQAFRFFDRNQVGYIRVEDLRLIIHNLGKFLSHRDV 642 (672)
Q Consensus 573 emIsdiD~--dGkIDFdEFLaima~k---~k~~d~-----eEELreAFkvFDkDgdGyIt~dDLKeILktLGekLS~EEV 642 (672)
.|+..+|. +..++..+|+...... ++..+. ...++..=..+|.|++|.++..+|..++.-+...+.-.++
T Consensus 240 eivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n~~~alne~ 319 (362)
T KOG4251|consen 240 EIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQNFRLALNEV 319 (362)
T ss_pred HHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCchhhhhhHHHH
Confidence 34444554 5568899998743211 111111 1233444447899999999999999998877777888889
Q ss_pred HHHHHHhhccCCCCCCCcccHHHHHH
Q 005884 643 KELVQSALLESNTGRDDRILYNKLVR 668 (672)
Q Consensus 643 keLIkeaD~esD~DgDGkIsYeEFVk 668 (672)
..||... +.+++..++.++++.
T Consensus 320 ~~~ma~~----d~n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 320 NDIMALT----DANNDEKLSLEELLE 341 (362)
T ss_pred HHHHhhh----ccCCCcccCHHHHHH
Confidence 9998887 478889999988865
No 97
>PLN02952 phosphoinositide phospholipase C
Probab=79.62 E-value=8 Score=45.48 Aligned_cols=90 Identities=8% Similarity=0.049 Sum_probs=62.5
Q ss_pred CCCccchHHHHHHHHhhc-CCCChHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc-CC-CCCHHHHHHHHHHhhccCC--
Q 005884 580 KHSDVDMGKKGERNVETG-KKEVFDKELLQAFRFFDRNQVGYIRVEDLRLIIHNL-GK-FLSHRDVKELVQSALLESN-- 654 (672)
Q Consensus 580 ~dGkIDFdEFLaima~k~-k~~d~eEELreAFkvFDkDgdGyIt~dDLKeILktL-Ge-kLS~EEVkeLIkeaD~esD-- 654 (672)
..|.++|.+|..+..... .......+|..+|..|-. +.+.|+.++|..+|... |. ..+..++..||..+...+.
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 357899999987654322 334467899999999854 44789999999999985 43 3677888888776521000
Q ss_pred -CCCCCcccHHHHHHHh
Q 005884 655 -TGRDDRILYNKLVRMS 670 (672)
Q Consensus 655 -~DgDGkIsYeEFVkmM 670 (672)
.-..+.++++.|..+|
T Consensus 92 ~~~~~~~l~~~~F~~~l 108 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFL 108 (599)
T ss_pred ccccccCcCHHHHHHHH
Confidence 0123458899998876
No 98
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=77.55 E-value=3.6 Score=50.04 Aligned_cols=64 Identities=17% Similarity=0.026 Sum_probs=52.4
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCH-----HHHHHHHHHhhccCCCCCCCcccHHHHHHHh
Q 005884 603 DKELLQAFRFFDRNQVGYIRVEDLRLIIHNLGKFLSH-----RDVKELVQSALLESNTGRDDRILYNKLVRMS 670 (672)
Q Consensus 603 eEELreAFkvFDkDgdGyIt~dDLKeILktLGekLS~-----EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM 670 (672)
..+|+..|+.||....|.+...+|.++|..+|...-. .++..|+... |....|+++|.+|...|
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~----n~l~~~qv~~~e~~ddl 814 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKK----NPLIQGQVQLLEFEDDL 814 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhcc----CcccccceeHHHHHhHh
Confidence 4689999999999999999999999999999988764 2344455554 46667999999998876
No 99
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=77.44 E-value=8 Score=35.60 Aligned_cols=51 Identities=16% Similarity=0.240 Sum_probs=39.9
Q ss_pred CCCccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc
Q 005884 580 KHSDVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGYIRVEDLRLIIHNL 633 (672)
Q Consensus 580 ~dGkIDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGyIt~dDLKeILktL 633 (672)
.+|.|+...-..++. ....+...|..+|.+-|.+++|+++..+|.-+|+-+
T Consensus 22 ~~g~isg~~a~~~f~---~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 22 QDGKISGDQAREFFM---KSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp STTEEEHHHHHHHHH---HTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CCCeEeHHHHHHHHH---HcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 378888887766543 234556899999999999999999999999888753
No 100
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=77.41 E-value=3.4 Score=48.24 Aligned_cols=63 Identities=13% Similarity=0.204 Sum_probs=56.2
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 605 ELLQAFRFFDRNQVGYIRVEDLRLIIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 605 ELreAFkvFDkDgdGyIt~dDLKeILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
.++.-|..+|.+..||+...++.++|...+...+.+.+++++++++ .+-+|.+...+|.++|.
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~----~~~~g~v~l~e~~q~~s 656 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEAD----ENLNGFVELREFLQLMS 656 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH----HhhcceeeHHHHHHHHH
Confidence 4556799999999999999999999999998899999999999995 56689999999998873
No 101
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=75.99 E-value=15 Score=44.25 Aligned_cols=119 Identities=8% Similarity=0.026 Sum_probs=88.1
Q ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHhhC--CCCccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCceeHH
Q 005884 547 TDANAQSGMESGNEKDKANESNKEKTIMEAAEV--KHSDVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGYIRVE 624 (672)
Q Consensus 547 sgaI~~sEL~~aLRsLG~epSEeEIeemIsdiD--~dGkIDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGyIt~d 624 (672)
.+-++..+...+++.|...+...-+..++.+.+ ..+.+.+.+|..+... ..... ++..+|..|-.+ .++++..
T Consensus 150 ~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~---~~~rp-ev~~~f~~~s~~-~~~ls~~ 224 (746)
T KOG0169|consen 150 NGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKE---LTKRP-EVYFLFVQYSHG-KEYLSTD 224 (746)
T ss_pred ccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHh---hccCc-hHHHHHHHHhCC-CCccCHH
Confidence 456777888889998888888877777777653 4788998888875432 12222 788888877554 9999999
Q ss_pred HHHHHHHHcC--CCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHh
Q 005884 625 DLRLIIHNLG--KFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMS 670 (672)
Q Consensus 625 DLKeILktLG--ekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM 670 (672)
+|.++|.... ..++...+..||..+......-..+.++++.|..+|
T Consensus 225 ~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL 272 (746)
T KOG0169|consen 225 DLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYL 272 (746)
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHh
Confidence 9999998873 457888999999887421112245679999998876
No 102
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=72.32 E-value=11 Score=31.12 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=17.8
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHH
Q 005884 604 KELLQAFRFFDRNQVGYIRVEDLRLIIHN 632 (672)
Q Consensus 604 EELreAFkvFDkDgdGyIt~dDLKeILkt 632 (672)
.-...+|+..|++++|+|...++..+++.
T Consensus 21 ~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 21 EYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp HHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 34555666667777777776666666554
No 103
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=71.57 E-value=5.5 Score=50.33 Aligned_cols=56 Identities=20% Similarity=0.355 Sum_probs=48.8
Q ss_pred HhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHH
Q 005884 609 AFRFFDRNQVGYIRVEDLRLIIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRM 669 (672)
Q Consensus 609 AFkvFDkDgdGyIt~dDLKeILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkm 669 (672)
.|+.||.||.|.|+..++..+|..- ...++.++.-|+..+. .|.+..++|.+|+.-
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae----~dend~~~y~dfv~r 4117 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAE----ADENDMFDYEDFVDR 4117 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhc----cCccccccHHHHHHH
Confidence 5788999999999999999998763 4579999999999984 678899999999874
No 104
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=70.25 E-value=13 Score=42.55 Aligned_cols=64 Identities=13% Similarity=0.102 Sum_probs=50.8
Q ss_pred HHHHHHHhh--CCCCccchHHHHHHHH---hhcCCCChHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc
Q 005884 570 EKTIMEAAE--VKHSDVDMGKKGERNV---ETGKKEVFDKELLQAFRFFDRNQVGYIRVEDLRLIIHNL 633 (672)
Q Consensus 570 EIeemIsdi--D~dGkIDFdEFLaima---~k~k~~d~eEELreAFkvFDkDgdGyIt~dDLKeILktL 633 (672)
.+..|++-+ |..|.|+++||..+.. ..++..-...++.+.-+.+|-|++|+|+..+|.++|+-.
T Consensus 548 ~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred hHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 455566554 5689999999988543 345556667889999999999999999999999998764
No 105
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=69.35 E-value=14 Score=34.96 Aligned_cols=44 Identities=9% Similarity=0.175 Sum_probs=41.0
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 005884 606 LLQAFRFFDRNQVGYIRVEDLRLIIHNLGKFLSHRDVKELVQSA 649 (672)
Q Consensus 606 LreAFkvFDkDgdGyIt~dDLKeILktLGekLS~EEVkeLIkea 649 (672)
+..+|-++..-++-..+..+|+.||..+|..+..+.|+.+|..+
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel 46 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSEL 46 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHh
Confidence 56788899999999999999999999999999999999999998
No 106
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=68.81 E-value=22 Score=34.60 Aligned_cols=62 Identities=15% Similarity=0.286 Sum_probs=45.8
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHHHHHcC---CCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 606 LLQAFRFFDRNQVGYIRVEDLRLIIHNLG---KFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 606 LreAFkvFDkDgdGyIt~dDLKeILktLG---ekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
+-.+|..|-..+...|+...+..+|+..| ..++..++.-+|..+- ..+...|+|.+|+.+|.
T Consensus 4 ~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk----~k~~~~I~f~~F~~aL~ 68 (154)
T PF05517_consen 4 VFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVK----AKGARKITFEQFLEALA 68 (154)
T ss_dssp HHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-----SS-SEEEHHHHHHHHH
T ss_pred HHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhh----cCCCcccCHHHHHHHHH
Confidence 34445555567778899999999999864 4589999999999983 34456799999998774
No 107
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.26 E-value=3.7 Score=45.80 Aligned_cols=64 Identities=19% Similarity=0.346 Sum_probs=46.9
Q ss_pred CChHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHH
Q 005884 600 EVFDKELLQAFRFFDRNQVGYIRVEDLRLIIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKL 666 (672)
Q Consensus 600 ~d~eEELreAFkvFDkDgdGyIt~dDLKeILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEF 666 (672)
..+.+.++++|..+|+.++|||+..-|+.+|..+...++.-..-.+++... ++.+-|.|-..+|
T Consensus 305 ~~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l---~pE~~~iil~~d~ 368 (449)
T KOG2871|consen 305 ENPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPL---DPESLGIILLEDF 368 (449)
T ss_pred CCCCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCcc---ChhhcceEEeccc
Confidence 345689999999999999999999999999999886666655444554432 4555555544444
No 108
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=66.02 E-value=15 Score=31.34 Aligned_cols=63 Identities=11% Similarity=0.080 Sum_probs=46.6
Q ss_pred HHHHHHHhhCC-CCccchHHHHHHHHhhcCC-CChHHHHHHHhhhhcCC----CCCceeHHHHHHHHHH
Q 005884 570 EKTIMEAAEVK-HSDVDMGKKGERNVETGKK-EVFDKELLQAFRFFDRN----QVGYIRVEDLRLIIHN 632 (672)
Q Consensus 570 EIeemIsdiD~-dGkIDFdEFLaima~k~k~-~d~eEELreAFkvFDkD----gdGyIt~dDLKeILkt 632 (672)
||..++..+.. .+.|+..+|...+...++. ..+...+..+|..|..+ ..+.|+...|...|..
T Consensus 1 ei~~if~~ys~~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSSDKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCTTSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhCCCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 45666666543 6779999999988776665 34677888888888654 4799999999998865
No 109
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.65 E-value=11 Score=43.50 Aligned_cols=62 Identities=11% Similarity=0.224 Sum_probs=52.3
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHhcC
Q 005884 605 ELLQAFRFFDRNQVGYIRVEDLRLIIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMSDI 672 (672)
Q Consensus 605 ELreAFkvFDkDgdGyIt~dDLKeILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~l 672 (672)
-+-..|+.+-.|-.|||+-.--+.+|..- +|.-.++..||... |.+.||-+++.|||..|-|
T Consensus 232 YYvnQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLs----D~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 232 YYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELS----DVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHHhhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhc----ccCccccccHHHHHhhHhh
Confidence 45567888899999999999888888774 46778899999887 5899999999999998754
No 110
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=56.22 E-value=72 Score=29.29 Aligned_cols=77 Identities=6% Similarity=0.036 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCccchHHHHHHHHhhcCCCChHHHHHHHhhhh-cCCCCCceeHHHHH
Q 005884 549 ANAQSGMESGNEKDKANESNKEKTIMEAAEVKHSDVDMGKKGERNVETGKKEVFDKELLQAFRFF-DRNQVGYIRVEDLR 627 (672)
Q Consensus 549 aI~~sEL~~aLRsLG~epSEeEIeemIsdiD~dGkIDFdEFLaima~k~k~~d~eEELreAFkvF-DkDgdGyIt~dDLK 627 (672)
.+++.+++.+.|.||+ |+.+|..+..+. ..+..+...+.+..+ .+.|. .-+...|.
T Consensus 17 ~~~~~~wK~faR~lgl--se~~Id~I~~~~--------------------~~d~~Eq~~qmL~~W~~~~G~-~a~~~~Li 73 (97)
T cd08316 17 VMTLKDVKKFVRKSGL--SEPKIDEIKLDN--------------------PQDTAEQKVQLLRAWYQSHGK-TGAYRTLI 73 (97)
T ss_pred HcCHHHHHHHHHHcCC--CHHHHHHHHHcC--------------------CCChHHHHHHHHHHHHHHhCC-CchHHHHH
Confidence 5678899999999995 677777664421 111223333333322 12221 22347788
Q ss_pred HHHHHcCCCCCHHHHHHHHHH
Q 005884 628 LIIHNLGKFLSHRDVKELVQS 648 (672)
Q Consensus 628 eILktLGekLS~EEVkeLIke 648 (672)
..|+.+++....+.|..++..
T Consensus 74 ~aLr~~~l~~~Ad~I~~~l~~ 94 (97)
T cd08316 74 KTLRKAKLCTKADKIQDIIEA 94 (97)
T ss_pred HHHHHccchhHHHHHHHHHHh
Confidence 999999999888888888765
No 111
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=55.97 E-value=6 Score=43.65 Aligned_cols=66 Identities=11% Similarity=0.166 Sum_probs=48.6
Q ss_pred CChHHHHHHHhhhhcCCCCCceeHHHHH---HHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 600 EVFDKELLQAFRFFDRNQVGYIRVEDLR---LIIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 600 ~d~eEELreAFkvFDkDgdGyIt~dDLK---eILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
.+.+.-+...|.++|.|+++-|...+++ ++|..... ...=.+.|+... |.++|-.|++.||+..|+
T Consensus 329 ~DeeRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~--~rkC~rk~~~yC----DlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 329 PDEERVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSK--PRKCSRKFFKYC----DLNKDKKISLDEWRGCLG 397 (421)
T ss_pred CChhheeeeeeeeecccccCccchhhcchHHHHHHhhcc--HHHHhhhcchhc----ccCCCceecHHHHhhhhc
Confidence 3444567889999999999999998854 44443221 223346788888 589999999999998764
No 112
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=52.21 E-value=1.3e+02 Score=30.74 Aligned_cols=120 Identities=8% Similarity=-0.028 Sum_probs=76.1
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHhh--C---CCCccc---hHHHHHHHHhhc----------CCCChHHHHH
Q 005884 546 KTDANAQSGMESGNEKDKANESNKEKTIMEAAE--V---KHSDVD---MGKKGERNVETG----------KKEVFDKELL 607 (672)
Q Consensus 546 ~sgaI~~sEL~~aLRsLG~epSEeEIeemIsdi--D---~dGkID---FdEFLaima~k~----------k~~d~eEELr 607 (672)
+.|.|.+.|--..+|+||+++--.-+..++-.. . ..+-+- |.-++.-+.... ...-.+..+.
T Consensus 20 ~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~YD~eGrFvp~kFe 99 (174)
T PF05042_consen 20 KDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAYDTEGRFVPQKFE 99 (174)
T ss_pred CCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccccccCCcCCHHHHH
Confidence 368999999999999999987655554443221 0 111111 111111111111 1223467899
Q ss_pred HHhhhhcCCCCCceeHHHHHHHHHHc-------CCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHh
Q 005884 608 QAFRFFDRNQVGYIRVEDLRLIIHNL-------GKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMS 670 (672)
Q Consensus 608 eAFkvFDkDgdGyIt~dDLKeILktL-------GekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM 670 (672)
.+|.-|++.+.+.|+..||.+++..- |-..+.-|+..+..-+ .+.+|.+.-+....++
T Consensus 100 ~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-----~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 100 EIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-----KDKDGFLSKEDIRGVY 164 (174)
T ss_pred HHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-----cCcCCcEeHHHHhhhc
Confidence 99999999999999999999999873 3223444555555555 5678998877776655
No 113
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=48.98 E-value=28 Score=33.96 Aligned_cols=69 Identities=7% Similarity=-0.108 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHhhCC---------CCccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCC
Q 005884 547 TDANAQSGMESGNEKDKANESNKEKTIMEAAEVK---------HSDVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQ 617 (672)
Q Consensus 547 sgaI~~sEL~~aLRsLG~epSEeEIeemIsdiD~---------dGkIDFdEFLaima~k~k~~d~eEELreAFkvFDkDg 617 (672)
-+.+++.|+..+=.-+-+ +...|.+++.+..+ ++.|+|+.|..+|...+....+.+=.+.+|..|=...
T Consensus 5 ~~~lsp~eF~qLq~y~ey--s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSEY--STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp -S-S-HHHHHHHHHHHHH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred eeccCHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 356778877776554433 45577777777543 4579999999999888876667777888999886544
No 114
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=48.42 E-value=1.1e+02 Score=27.79 Aligned_cols=76 Identities=14% Similarity=0.139 Sum_probs=48.0
Q ss_pred CCCHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCccchHHHHHHHHhhcCCCChHHHHHHHhhhh-cCCCCCceeHHHHH
Q 005884 549 ANAQSGMESGNEKDKANESNKEKTIMEAAEVKHSDVDMGKKGERNVETGKKEVFDKELLQAFRFF-DRNQVGYIRVEDLR 627 (672)
Q Consensus 549 aI~~sEL~~aLRsLG~epSEeEIeemIsdiD~dGkIDFdEFLaima~k~k~~d~eEELreAFkvF-DkDgdGyIt~dDLK 627 (672)
.+...+...++|.||+ ++.+|..+..+. ... .+.+.+++..+ -+.|. .-+...|.
T Consensus 16 ~V~~~~Wk~laR~LGL--se~~I~~i~~~~--------------------~~~-~eq~~qmL~~W~~~~G~-~At~~~L~ 71 (96)
T cd08315 16 EVPFDSWNRLMRQLGL--SENEIDVAKANE--------------------RVT-REQLYQMLLTWVNKTGR-KASVNTLL 71 (96)
T ss_pred HCCHHHHHHHHHHcCC--CHHHHHHHHHHC--------------------CCC-HHHHHHHHHHHHHhhCC-CcHHHHHH
Confidence 4567788889999995 677777664421 111 23333333322 12332 34578899
Q ss_pred HHHHHcCCCCCHHHHHHHHHH
Q 005884 628 LIIHNLGKFLSHRDVKELVQS 648 (672)
Q Consensus 628 eILktLGekLS~EEVkeLIke 648 (672)
..|..+|+....+.|+..+..
T Consensus 72 ~aL~~~~~~~~Ae~I~~~l~~ 92 (96)
T cd08315 72 DALEAIGLRLAKESIQDELIS 92 (96)
T ss_pred HHHHHcccccHHHHHHHHHHH
Confidence 999999999888888776543
No 115
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.84 E-value=40 Score=41.10 Aligned_cols=65 Identities=14% Similarity=0.150 Sum_probs=48.3
Q ss_pred hHHHHHHHhhhhc--CCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHhcC
Q 005884 602 FDKELLQAFRFFD--RNQVGYIRVEDLRLIIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMSDI 672 (672)
Q Consensus 602 ~eEELreAFkvFD--kDgdGyIt~dDLKeILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~l 672 (672)
+.++...-|..|+ .-+.|||+-+.-+.+|..-|++ .--+-+|+... |.|.||+++..+|--.|.|
T Consensus 11 T~~Er~K~~~qF~~Lkp~~gfitg~qArnfflqS~LP--~~VLaqIWALs----DldkDGrmdi~EfSIAmkL 77 (1118)
T KOG1029|consen 11 TDEERQKHDAQFGQLKPGQGFITGDQARNFFLQSGLP--TPVLAQIWALS----DLDKDGRMDIREFSIAMKL 77 (1118)
T ss_pred chHHHHHHHHHHhccCCCCCccchHhhhhhHHhcCCC--hHHHHHHHHhh----hcCccccchHHHHHHHHHH
Confidence 3455666677776 4678999999999999887754 44455666655 6899999999999766643
No 116
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=42.48 E-value=31 Score=38.18 Aligned_cols=58 Identities=17% Similarity=0.347 Sum_probs=41.7
Q ss_pred HHhhhhcCCCCCceeHHHHHHHHHH-c----CCCCCHHHHH-----------HHHHHhhccCCCCCCCcccHHHHHHH
Q 005884 608 QAFRFFDRNQVGYIRVEDLRLIIHN-L----GKFLSHRDVK-----------ELVQSALLESNTGRDDRILYNKLVRM 669 (672)
Q Consensus 608 eAFkvFDkDgdGyIt~dDLKeILkt-L----GekLS~EEVk-----------eLIkeaD~esD~DgDGkIsYeEFVkm 669 (672)
-.|.+.|.|++||+...+|..+|.. | ...-..+++. .+|+.+ |.+.|-.|+..+|+.-
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~v----DtNqDRlvtleEFL~~ 321 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQV----DTNQDRLVTLEEFLND 321 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhc----ccchhhhhhHHHHHhh
Confidence 3688899999999999999998864 2 2222223332 245666 5888999999999864
No 117
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=42.24 E-value=29 Score=38.83 Aligned_cols=60 Identities=22% Similarity=0.130 Sum_probs=49.7
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHh
Q 005884 603 DKELLQAFRFFDRNQVGYIRVEDLRLIIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMS 670 (672)
Q Consensus 603 eEELreAFkvFDkDgdGyIt~dDLKeILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM 670 (672)
...|-..|..+|.|.+|+|+..+|+.|-..- ...=|+.+|+..| ...||.|+-.||+..+
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~ldk----nE~CikpFfnsCD----~~kDg~iS~~EWC~CF 308 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIELDK----NEACIKPFFNSCD----TYKDGSISTNEWCYCF 308 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhccC----chhHHHHHHhhhc----ccccCccccchhhhhh
Confidence 4689999999999999999999999875432 3455788999995 6779999999998764
No 118
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=35.57 E-value=54 Score=39.15 Aligned_cols=50 Identities=24% Similarity=0.127 Sum_probs=36.7
Q ss_pred cchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc
Q 005884 584 VDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGYIRVEDLRLIIHNL 633 (672)
Q Consensus 584 IDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGyIt~dDLKeILktL 633 (672)
|+|..|+.++.....-....--+.+.|..+|.+++|.|+..+|...|..|
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l 584 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSIL 584 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHH
Confidence 55666666554333223344568889999999999999999999888776
No 119
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=35.28 E-value=54 Score=38.51 Aligned_cols=49 Identities=8% Similarity=-0.085 Sum_probs=39.8
Q ss_pred CCCCCCHHHHHHHHHhcCCC---CCHHHHHHHHHhh--CCCCccchHHHHHHHH
Q 005884 546 KTDANAQSGMESGNEKDKAN---ESNKEKTIMEAAE--VKHSDVDMGKKGERNV 594 (672)
Q Consensus 546 ~sgaI~~sEL~~aLRsLG~e---pSEeEIeemIsdi--D~dGkIDFdEFLaima 594 (672)
+.|.|+..+|..++..++.. ...+++..++... +.+|.|+|++|+.++.
T Consensus 31 ~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 31 QKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred CCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 47999999999999987753 3478888888774 5689999999998654
No 120
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=35.07 E-value=1.2e+02 Score=28.84 Aligned_cols=54 Identities=6% Similarity=0.044 Sum_probs=43.3
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHH
Q 005884 606 LLQAFRFFDRNQVGYIRVEDLRLIIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVR 668 (672)
Q Consensus 606 LreAFkvFDkDgdGyIt~dDLKeILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVk 668 (672)
+.-+|-++-.-++..|+.++|..||...|..+....+..++..+. ..++.+++.
T Consensus 5 yvaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~---------GKdI~ELIa 58 (112)
T PTZ00373 5 YVAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE---------GKTPHELIA 58 (112)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc---------CCCHHHHHH
Confidence 455677777778888999999999999999999999999998883 245666653
No 121
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=34.97 E-value=80 Score=35.33 Aligned_cols=109 Identities=12% Similarity=0.006 Sum_probs=66.1
Q ss_pred HHHHHHHHhcCCCCCHH--HHHH--HHHhhCCCCccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCceeHHHHHH
Q 005884 553 SGMESGNEKDKANESNK--EKTI--MEAAEVKHSDVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGYIRVEDLRL 628 (672)
Q Consensus 553 sEL~~aLRsLG~epSEe--EIee--mIsdiD~dGkIDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGyIt~dDLKe 628 (672)
-|+...-|.|++.+..= .+.. .++...+.+.|-..+|.... .....+.|...|.+||.+++|-++..+--.
T Consensus 209 ~eF~~~~r~lkL~~~gl~k~ld~y~~var~~kg~~igi~efa~~l-----~vpvsd~l~~~f~LFde~~tg~~D~re~v~ 283 (412)
T KOG4666|consen 209 PEFVAKRRVLKLPLVGLIKKLDGYVYVAREAKGPDIGIVEFAVNL-----RVPVSDKLAPTFMLFDEGTTGNGDYRETVK 283 (412)
T ss_pred HHHHHHHhccCCChHHHHHHHhhHHHHHHhccCCCcceeEeeeee-----ecchhhhhhhhhheecCCCCCcccHHHHhh
Confidence 45666666666654211 1111 11222334445544553311 122347899999999999999997665444
Q ss_pred HHHH-cCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHh
Q 005884 629 IIHN-LGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMS 670 (672)
Q Consensus 629 ILkt-LGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM 670 (672)
.|.- +|...+..-|+.-+..++ .+-||.+.-.+|--++
T Consensus 284 ~lavlc~p~~t~~iiq~afk~f~----v~eDg~~ge~~ls~il 322 (412)
T KOG4666|consen 284 TLAVLCGPPVTPVIIQYAFKRFS----VAEDGISGEHILSLIL 322 (412)
T ss_pred hheeeeCCCCcHHHHHHHHHhcc----cccccccchHHHHHHH
Confidence 4433 367778888888888874 6788888877776554
No 122
>PLN02222 phosphoinositide phospholipase C 2
Probab=34.55 E-value=1e+02 Score=36.57 Aligned_cols=65 Identities=12% Similarity=0.245 Sum_probs=47.4
Q ss_pred ChHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc-CC-CCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHh
Q 005884 601 VFDKELLQAFRFFDRNQVGYIRVEDLRLIIHNL-GK-FLSHRDVKELVQSALLESNTGRDDRILYNKLVRMS 670 (672)
Q Consensus 601 d~eEELreAFkvFDkDgdGyIt~dDLKeILktL-Ge-kLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM 670 (672)
....+|..+|..|-. .++++.++|..+|... |. ..+.+.+..||.... ..-..+.++++.|..+|
T Consensus 22 ~~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~---~~~~~~~~~~~gF~~yL 88 (581)
T PLN02222 22 EAPREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSAS---SLLHRNGLHLDAFFKYL 88 (581)
T ss_pred CCcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhh---hhhhccCcCHHHHHHHh
Confidence 355689999988853 4799999999999875 44 357778888888752 11235678899998876
No 123
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=32.92 E-value=62 Score=39.22 Aligned_cols=91 Identities=13% Similarity=0.087 Sum_probs=56.3
Q ss_pred HHHHHHhh--CCCCccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005884 571 KTIMEAAE--VKHSDVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGYIRVEDLRLIIHNLGKFLSHRDVKELVQS 648 (672)
Q Consensus 571 IeemIsdi--D~dGkIDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGyIt~dDLKeILktLGekLS~EEVkeLIke 648 (672)
|..++... +.+|.++|.+-+.+.. .+........++..|+..|..++|.|....+..+...++... ++..+|..
T Consensus 138 i~~~~~~ad~~~~~~~~~~~~~~~~~-~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~~ 213 (746)
T KOG0169|consen 138 IHSIFQEADKNKNGHMSFDEVLDLLK-QLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLFVQ 213 (746)
T ss_pred HHHHHHHHccccccccchhhHHHHHH-HHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHHHH
Confidence 34444443 3467777777555432 123333445666777777777777887777777777776543 67777766
Q ss_pred hhccCCCCCCCcccHHHHHHHh
Q 005884 649 ALLESNTGRDDRILYNKLVRMS 670 (672)
Q Consensus 649 aD~esD~DgDGkIsYeEFVkmM 670 (672)
. .++.+.++..+++.++
T Consensus 214 ~-----s~~~~~ls~~~L~~Fl 230 (746)
T KOG0169|consen 214 Y-----SHGKEYLSTDDLLRFL 230 (746)
T ss_pred H-----hCCCCccCHHHHHHHH
Confidence 6 3446777777776655
No 124
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=32.77 E-value=2.8e+02 Score=26.47 Aligned_cols=97 Identities=13% Similarity=0.053 Sum_probs=53.5
Q ss_pred HHHHhhCCCCccchHHHHHHHHhhc-----C-CCChHHHHHHHhhhhcCCC--CCceeHHHHHHHHHHc--------CCC
Q 005884 573 IMEAAEVKHSDVDMGKKGERNVETG-----K-KEVFDKELLQAFRFFDRNQ--VGYIRVEDLRLIIHNL--------GKF 636 (672)
Q Consensus 573 emIsdiD~dGkIDFdEFLaima~k~-----k-~~d~eEELreAFkvFDkDg--dGyIt~dDLKeILktL--------Gek 636 (672)
+++.++..-+.|-|.-|..+|..+. . ....-..+..+|..+..+. +..|+..+|..+|..+ +..
T Consensus 4 ~l~~~l~~~n~IrfsaYRtA~KLR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~ 83 (127)
T PF09068_consen 4 ELMQELQDFNNIRFSAYRTAMKLRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTL 83 (127)
T ss_dssp HHHHHGGGGTT-SSHHHHHHHHHHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHhhHHHHHhHHHHHHHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 3444444455699999988876431 1 1223456778888776443 4779999999988765 211
Q ss_pred CC------HHHHHHHHHHhhccCCCCCCCcccHHHHHHH
Q 005884 637 LS------HRDVKELVQSALLESNTGRDDRILYNKLVRM 669 (672)
Q Consensus 637 LS------~EEVkeLIkeaD~esD~DgDGkIsYeEFVkm 669 (672)
.. +.-+.-+++.+...||+++.|.|..-.|...
T Consensus 84 ~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~Kva 122 (127)
T PF09068_consen 84 HQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVA 122 (127)
T ss_dssp --HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHH
Confidence 11 0222333343333458999999998888543
No 125
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.34 E-value=46 Score=32.30 Aligned_cols=46 Identities=13% Similarity=-0.028 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHh------cCC----CCCHHHHHHHHHh------hCCCCccchHHHHHH
Q 005884 547 TDANAQSGMESGNEK------DKA----NESNKEKTIMEAA------EVKHSDVDMGKKGER 592 (672)
Q Consensus 547 sgaI~~sEL~~aLRs------LG~----epSEeEIeemIsd------iD~dGkIDFdEFLai 592 (672)
.+.++--||..++.- -|. -+++.|+..||.. .+++|.|||.+|+..
T Consensus 81 nn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 81 NNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred CCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 445555677777652 232 3568888888765 356899999999863
No 126
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=30.79 E-value=73 Score=27.64 Aligned_cols=31 Identities=10% Similarity=-0.071 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 005884 548 DANAQSGMESGNEKDKANESNKEKTIMEAAE 578 (672)
Q Consensus 548 gaI~~sEL~~aLRsLG~epSEeEIeemIsdi 578 (672)
--|+..-++..+..+|..||+..|..+++.+
T Consensus 30 Ppine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 30 PPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 3578899999999999999999999998754
No 127
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=29.27 E-value=2.6e+02 Score=25.59 Aligned_cols=62 Identities=16% Similarity=0.259 Sum_probs=36.6
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHH-------cCCCC----CHHHHHHHHHHhhccCCCCCCCcccHHHHHHHhc
Q 005884 603 DKELLQAFRFFDRNQVGYIRVEDLRLIIHN-------LGKFL----SHRDVKELVQSALLESNTGRDDRILYNKLVRMSD 671 (672)
Q Consensus 603 eEELreAFkvFDkDgdGyIt~dDLKeILkt-------LGekL----S~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM~ 671 (672)
.+.++.+|..+ .|++|.|+..-|..+|+. +|+.. ...-++..|..+ ...-.|+-..|+.-|.
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~------~~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV------QLSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT------TT-S-B-HHHHHHHHH
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc------CCCCccCHHHHHHHHH
Confidence 36788899988 788999998877777754 34332 334445555554 2456799999988663
No 128
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=26.74 E-value=2e+02 Score=27.07 Aligned_cols=44 Identities=9% Similarity=0.171 Sum_probs=37.6
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 005884 606 LLQAFRFFDRNQVGYIRVEDLRLIIHNLGKFLSHRDVKELVQSA 649 (672)
Q Consensus 606 LreAFkvFDkDgdGyIt~dDLKeILktLGekLS~EEVkeLIkea 649 (672)
+.-+|-++-..++..|+.++|..||...|..+....+..++..+
T Consensus 3 yvaAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L 46 (109)
T cd05833 3 YVAAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISEL 46 (109)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 44567777777888999999999999999999888888888887
No 129
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=26.72 E-value=6.3e+02 Score=26.88 Aligned_cols=115 Identities=9% Similarity=0.029 Sum_probs=59.2
Q ss_pred CCCCHHHHH---HHHHhcCCCCCHHH---HHHHHHhhCCCCccchHHHHHHHHhhcCCCChHHHHH-----HHhhhhcCC
Q 005884 548 DANAQSGME---SGNEKDKANESNKE---KTIMEAAEVKHSDVDMGKKGERNVETGKKEVFDKELL-----QAFRFFDRN 616 (672)
Q Consensus 548 gaI~~sEL~---~aLRsLG~epSEeE---IeemIsdiD~dGkIDFdEFLaima~k~k~~d~eEELr-----eAFkvFDkD 616 (672)
|.++..|+. .+|..++.. ..+ +..++..- .....+|.+|+..+...... ...|. .+|.+- -
T Consensus 70 G~Vse~Ei~~~~~l~~~~~l~--~~~r~~a~~lf~~~-k~~~~~l~~~~~~~~~~~~~---r~~l~~~lL~~l~~vA--~ 141 (267)
T PRK09430 70 GRVTEADIRIASQLMDRMNLH--GEARRAAQQAFREG-KEPDFPLREKLRQFRSVCGG---RFDLLRMFLEIQIQAA--F 141 (267)
T ss_pred CCcCHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHh-cccCCCHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHH--H
Confidence 456666665 333445554 343 44455432 23347788888866543321 11222 223321 1
Q ss_pred CCCceeHHHHH---HHHHHcCCCCCHHHHHHHHHHhhccCCCCC----C------CcccHHHHHHHhcC
Q 005884 617 QVGYIRVEDLR---LIIHNLGKFLSHRDVKELVQSALLESNTGR----D------DRILYNKLVRMSDI 672 (672)
Q Consensus 617 gdGyIt~dDLK---eILktLGekLS~EEVkeLIkeaD~esD~Dg----D------GkIsYeEFVkmM~l 672 (672)
-+|.|+..+.. +|...| .+++.+...|+..+...+.-.+ . ...++.+++.++++
T Consensus 142 ADG~l~~~E~~~L~~Ia~~L--gis~~df~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ay~vLgv 208 (267)
T PRK09430 142 ADGSLHPNERQVLYVIAEEL--GFSRFQFDQLLRMMQAGFRFQQQQGGGGYQQAQRGPTLEDAYKVLGV 208 (267)
T ss_pred hcCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhhcccccccccccccCCCcHHhHHHHcCC
Confidence 24889987733 333334 4788888888777531100000 1 13567788877754
No 130
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=26.68 E-value=52 Score=33.47 Aligned_cols=34 Identities=32% Similarity=0.273 Sum_probs=28.9
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCC
Q 005884 605 ELLQAFRFFDRNQVGYIRVEDLRLIIHNLGKFLS 638 (672)
Q Consensus 605 ELreAFkvFDkDgdGyIt~dDLKeILktLGekLS 638 (672)
.|++=...||+|++|.|..-|--.-++.||..+-
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~ 41 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGIL 41 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHH
Confidence 4666778899999999999999999999887643
No 131
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=26.56 E-value=22 Score=33.17 Aligned_cols=12 Identities=0% Similarity=-0.180 Sum_probs=3.5
Q ss_pred CCHHHHHHHHHh
Q 005884 550 NAQSGMESGNEK 561 (672)
Q Consensus 550 I~~sEL~~aLRs 561 (672)
+++-++..++..
T Consensus 41 ~p~p~fgea~~~ 52 (101)
T PF09026_consen 41 VPVPEFGEAMAY 52 (101)
T ss_dssp -----HHHHHHH
T ss_pred ccchhHHHHHhh
Confidence 445555555543
No 132
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.90 E-value=28 Score=42.67 Aligned_cols=61 Identities=18% Similarity=0.244 Sum_probs=50.4
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHh
Q 005884 604 KELLQAFRFFDRNQVGYIRVEDLRLIIHNLGKFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMS 670 (672)
Q Consensus 604 EELreAFkvFDkDgdGyIt~dDLKeILktLGekLS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM 670 (672)
..+..+|..+|.+..|+|+...+..+|...| |+...+..++..+ +..+.|.|++.+|+-.|
T Consensus 283 ~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~----d~~n~~~ls~~ef~~~~ 343 (847)
T KOG0998|consen 283 QKYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLA----DTQNTGTLSKDEFALAM 343 (847)
T ss_pred HHHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhc----chhccCcccccccchhh
Confidence 4566689999999999999999999998855 5677777887777 58889999999887655
No 133
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=24.85 E-value=2.6e+02 Score=26.14 Aligned_cols=29 Identities=10% Similarity=0.260 Sum_probs=27.6
Q ss_pred eeHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 005884 621 IRVEDLRLIIHNLGKFLSHRDVKELVQSA 649 (672)
Q Consensus 621 It~dDLKeILktLGekLS~EEVkeLIkea 649 (672)
|+.++|..||+..|..+....+..++..+
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aL 45 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSAL 45 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHH
Confidence 99999999999999999999999999887
No 134
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=24.66 E-value=1.9e+02 Score=22.40 Aligned_cols=39 Identities=31% Similarity=0.381 Sum_probs=31.6
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 005884 604 KELLQAFRFFDRNQVGYIRVEDLRLIIHNLGKFLSHRDVKELVQSA 649 (672)
Q Consensus 604 EELreAFkvFDkDgdGyIt~dDLKeILktLGekLS~EEVkeLIkea 649 (672)
..|..+|.. +.|.+..++..+...+| |+..+|..+|..-
T Consensus 13 ~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~nr 51 (59)
T cd00086 13 EELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWFQNR 51 (59)
T ss_pred HHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHHHH
Confidence 456666665 67999999999999988 7889999988764
No 135
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=24.29 E-value=1.7e+02 Score=27.82 Aligned_cols=51 Identities=18% Similarity=0.380 Sum_probs=33.5
Q ss_pred hhhcCCCCCceeHHHHHHHHHHc----------CCCCCHHHHHHHHHHhhccCCCCCCCcccHHH
Q 005884 611 RFFDRNQVGYIRVEDLRLIIHNL----------GKFLSHRDVKELVQSALLESNTGRDDRILYNK 665 (672)
Q Consensus 611 kvFDkDgdGyIt~dDLKeILktL----------GekLS~EEVkeLIkeaD~esD~DgDGkIsYeE 665 (672)
++||...+-||+.++|..+++.- |..+|..-+-+||-+.. ..+...++..-
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E----~~g~~~lp~~~ 70 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEE----SGGEPVLSTDF 70 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHH----hCCCCCCCHHH
Confidence 46788888888888888877652 66677776767666653 33444454433
No 136
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=24.01 E-value=59 Score=37.31 Aligned_cols=46 Identities=15% Similarity=0.458 Sum_probs=0.0
Q ss_pred hhHHhhhccCCCCCCCCCCCCCCCCCcchhcccCCCCCCCCCCCCC
Q 005884 496 AKVEEQKLKSKPNEETEDEEDPEEYPEEDEEMGDASSQPNSSNGND 541 (672)
Q Consensus 496 ~k~e~e~~~~~~d~e~d~Ee~~e~d~~edee~~d~~~~~~~~~~~~ 541 (672)
+..|.+...++++++.|++++.++|.+++++.+|++.+++..++.+
T Consensus 43 eEaEEEA~~EEdededd~~d~DddD~d~ddddddeDe~~De~dD~d 88 (458)
T PF10446_consen 43 EEAEEEAEEEEDEDEDDEDDDDDDDEDDDDDDDDEDEDDDEEDDDD 88 (458)
T ss_pred HHHHHHHhhccccccccccccccccccccccccccccccccccccc
No 137
>PRK00523 hypothetical protein; Provisional
Probab=23.38 E-value=1.2e+02 Score=27.06 Aligned_cols=31 Identities=3% Similarity=-0.106 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 005884 548 DANAQSGMESGNEKDKANESNKEKTIMEAAE 578 (672)
Q Consensus 548 gaI~~sEL~~aLRsLG~epSEeEIeemIsdi 578 (672)
-.|+..-++..+..+|..||+..|..+++.+
T Consensus 38 Ppine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 38 PPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred cCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 3578889999999999999999999998754
No 138
>PLN02230 phosphoinositide phospholipase C 4
Probab=23.25 E-value=2.1e+02 Score=34.10 Aligned_cols=71 Identities=10% Similarity=0.120 Sum_probs=49.9
Q ss_pred CCChHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcC--C-CCCHHHHHHHHHHhhccCC---CCCCCcccHHHHHHHh
Q 005884 599 KEVFDKELLQAFRFFDRNQVGYIRVEDLRLIIHNLG--K-FLSHRDVKELVQSALLESN---TGRDDRILYNKLVRMS 670 (672)
Q Consensus 599 ~~d~eEELreAFkvFDkDgdGyIt~dDLKeILktLG--e-kLS~EEVkeLIkeaD~esD---~DgDGkIsYeEFVkmM 670 (672)
...+..+|..+|..|-.++ ++++.++|..+|.... . ..+.+++..+|..+...+. .-..+.++++.|..+|
T Consensus 24 ~~~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL 100 (598)
T PLN02230 24 ESGPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYL 100 (598)
T ss_pred cCCCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHH
Confidence 3456789999999995433 8999999999998853 2 3467888888876521000 0123469999998865
No 139
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=22.76 E-value=1.3e+02 Score=29.01 Aligned_cols=49 Identities=22% Similarity=0.345 Sum_probs=40.3
Q ss_pred CCChHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc-CCCCCHHHHHHHHHHhh
Q 005884 599 KEVFDKELLQAFRFFDRNQVGYIRVEDLRLIIHNL-GKFLSHRDVKELVQSAL 650 (672)
Q Consensus 599 ~~d~eEELreAFkvFDkDgdGyIt~dDLKeILktL-GekLS~EEVkeLIkeaD 650 (672)
.......|..+|++|- .+.|+.+.|..+|.+. |..||..|+..+...+-
T Consensus 32 d~tf~~Kl~~Il~mFl---~~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~~ 81 (122)
T PF06648_consen 32 DETFLDKLIKILKMFL---NDEIDVEDMYNLFGAVDGLKLTRSQIDYLYNRVY 81 (122)
T ss_pred CchHHHHHHHHHHHHH---hCCCCHHHHHHHHhcccHhhcCHHHHHHHHHHHH
Confidence 4445578888999997 4789999999999987 68999999988887763
No 140
>cd08784 Death_DRs Death Domain of Death Receptors. Death domain (DD) found in death receptor proteins. Death receptors are members of the tumor necrosis factor (TNF) receptor superfamily, characterized by having a cytoplasmic DD. Known members of the family are Fas (CD95/APO-1), TNF-receptor 1 (TNFR1/TNFRSF1A/p55/CD120a), TNF-related apoptosis-inducing ligand receptor 1 (TRAIL-R1 /DR4), and receptor 2 (TRAIL-R2/DR5/APO-2/KILLER), as well as Death Receptor 3 (DR3/APO-3/TRAMP/WSL-1/LARD). They are involved in apoptosis signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=21.91 E-value=3.6e+02 Score=23.50 Aligned_cols=69 Identities=10% Similarity=0.081 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCccchHHHHHHHHhhcCCCChHHHHHHHhhhh-cCCCCCceeHHHHH
Q 005884 549 ANAQSGMESGNEKDKANESNKEKTIMEAAEVKHSDVDMGKKGERNVETGKKEVFDKELLQAFRFF-DRNQVGYIRVEDLR 627 (672)
Q Consensus 549 aI~~sEL~~aLRsLG~epSEeEIeemIsdiD~dGkIDFdEFLaima~k~k~~d~eEELreAFkvF-DkDgdGyIt~dDLK 627 (672)
.++..+...+.|.||+ ++.+|..+-.+ .+...+.+..++..+ .+.|. .-+...|.
T Consensus 8 ~v~~~~Wk~laR~LGl--s~~~I~~ie~~---------------------~~~~~eq~~~mL~~W~~k~G~-~At~~~L~ 63 (79)
T cd08784 8 EVPFDQHKRFFRKLGL--SDNEIKVAELD---------------------NPQHRDRVYELLRIWRNKEGR-KATLNTLI 63 (79)
T ss_pred HCCHHHHHHHHHHcCC--CHHHHHHHHHc---------------------CCchHHHHHHHHHHHHhccCc-CcHHHHHH
Confidence 4677888899999996 56666665331 111223333333322 34444 44678888
Q ss_pred HHHHHcCCCCCHHH
Q 005884 628 LIIHNLGKFLSHRD 641 (672)
Q Consensus 628 eILktLGekLS~EE 641 (672)
.+|..+|+..+.+.
T Consensus 64 ~aL~~~~~~~~Ae~ 77 (79)
T cd08784 64 KALKDLDQRRTAEK 77 (79)
T ss_pred HHHHHcccHhHHHH
Confidence 88888887655443
No 141
>PLN02228 Phosphoinositide phospholipase C
Probab=21.90 E-value=2.7e+02 Score=33.14 Aligned_cols=69 Identities=13% Similarity=0.177 Sum_probs=42.9
Q ss_pred CChHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc-CCC-CCHHHHHHHHHHhhccCCCCCCCcccHHHHHHHh
Q 005884 600 EVFDKELLQAFRFFDRNQVGYIRVEDLRLIIHNL-GKF-LSHRDVKELVQSALLESNTGRDDRILYNKLVRMS 670 (672)
Q Consensus 600 ~d~eEELreAFkvFDkDgdGyIt~dDLKeILktL-Gek-LS~EEVkeLIkeaD~esD~DgDGkIsYeEFVkmM 670 (672)
..+..+|..+|..|-. .++|+.++|..+|... |.. .+...+..||..+.........|.++++.|..+|
T Consensus 20 ~~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl 90 (567)
T PLN02228 20 REPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYL 90 (567)
T ss_pred CCCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHh
Confidence 3466778888877743 2578888888888765 333 4556677777776200000123568888887765
No 142
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=21.85 E-value=98 Score=28.75 Aligned_cols=55 Identities=15% Similarity=-0.040 Sum_probs=35.6
Q ss_pred HHHHHHhh--CCCCccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCceeHHHHHH
Q 005884 571 KTIMEAAE--VKHSDVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGYIRVEDLRL 628 (672)
Q Consensus 571 IeemIsdi--D~dGkIDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGyIt~dDLKe 628 (672)
+.=++..+ +++|.|+-.|+..+.. .....+..++..|.+-|.|++|.|+..|...
T Consensus 56 ~~W~F~~LD~n~d~~L~~~El~~l~~---~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 56 VHWKFCQLDRNKDGVLDRSELKPLRR---PLMPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHH--T-SSEE-TTTTGGGGS---TTSTTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhHhhhcCCCCCccCHHHHHHHHH---HHhhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 33445554 4588899888766432 1234456788899999999999999988654
No 143
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.19 E-value=2.4e+02 Score=33.35 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=41.6
Q ss_pred CCCCccchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc-----CCCCCH
Q 005884 579 VKHSDVDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGYIRVEDLRLIIHNL-----GKFLSH 639 (672)
Q Consensus 579 D~dGkIDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGyIt~dDLKeILktL-----GekLS~ 639 (672)
|.+|.|.-.--..++. +....-.+|..+|.+-|.+.+|-|+..+|..+|+.+ |+.|..
T Consensus 243 Dp~gfisGsaAknFFt---KSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaRkNgypLPe 305 (737)
T KOG1955|consen 243 DPHGFISGSAAKNFFT---KSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVARKNGYPLPE 305 (737)
T ss_pred CcccccccHHHHhhhh---hccCchHHHHHHHhhcccCccccccHHHHHhhHhheeecccCCCCCC
Confidence 4567776443333222 234456799999999999999999999999999865 555543
No 144
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=21.00 E-value=3.8e+02 Score=33.87 Aligned_cols=83 Identities=16% Similarity=0.121 Sum_probs=59.1
Q ss_pred cchHHHHHHHHhhcCCCChHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc----------CCCCCHHHHHHHHHHhhccC
Q 005884 584 VDMGKKGERNVETGKKEVFDKELLQAFRFFDRNQVGYIRVEDLRLIIHNL----------GKFLSHRDVKELVQSALLES 653 (672)
Q Consensus 584 IDFdEFLaima~k~k~~d~eEELreAFkvFDkDgdGyIt~dDLKeILktL----------GekLS~EEVkeLIkeaD~es 653 (672)
..|..|..++. ..-...+|..+|.-|--+..-|++...|..+|..- =.++...++..||....-..
T Consensus 205 f~~e~f~~~l~----klcpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~ 280 (1189)
T KOG1265|consen 205 FTLEKFYRLLN----KLCPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNS 280 (1189)
T ss_pred ccHHHHHHHHH----hcCCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCch
Confidence 44555555432 22334689999999988888999999999998642 23468899999999973211
Q ss_pred CCCCCCcccHHHHHHHh
Q 005884 654 NTGRDDRILYNKLVRMS 670 (672)
Q Consensus 654 D~DgDGkIsYeEFVkmM 670 (672)
+.-..|+|+-+-|+.++
T Consensus 281 ~~a~~gqms~dgf~ryl 297 (1189)
T KOG1265|consen 281 DNAEKGQMSTDGFVRYL 297 (1189)
T ss_pred hhhhccccchhhhHHHh
Confidence 12247899999998865
No 145
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=20.76 E-value=1.9e+02 Score=22.66 Aligned_cols=41 Identities=27% Similarity=0.402 Sum_probs=30.0
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005884 604 KELLQAFRFFDRNQVGYIRVEDLRLIIHNLGKFLSHRDVKELVQS 648 (672)
Q Consensus 604 EELreAFkvFDkDgdGyIt~dDLKeILktLGekLS~EEVkeLIke 648 (672)
..+..+..+|.. +.|++..++..|...|| |+..+|..+|..
T Consensus 10 ~q~~~L~~~f~~--~~~p~~~~~~~la~~l~--l~~~~V~~WF~n 50 (57)
T PF00046_consen 10 EQLKVLEEYFQE--NPYPSKEEREELAKELG--LTERQVKNWFQN 50 (57)
T ss_dssp HHHHHHHHHHHH--SSSCHHHHHHHHHHHHT--SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hcccccccccccccccc--ccccccccCHHH
Confidence 334444444443 78999999999999887 688899888865
No 146
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=20.74 E-value=3.7e+02 Score=24.01 Aligned_cols=70 Identities=11% Similarity=0.109 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCccchHHHHHHHHhhcCCCChHHHHHHHhhhhc-CCCCCceeHHHHH
Q 005884 549 ANAQSGMESGNEKDKANESNKEKTIMEAAEVKHSDVDMGKKGERNVETGKKEVFDKELLQAFRFFD-RNQVGYIRVEDLR 627 (672)
Q Consensus 549 aI~~sEL~~aLRsLG~epSEeEIeemIsdiD~dGkIDFdEFLaima~k~k~~d~eEELreAFkvFD-kDgdGyIt~dDLK 627 (672)
.++....+.++|.||+ |+.+|+.+-.+ .....+...+.+..+= +.|.-.-+...|.
T Consensus 8 ~v~~~~wk~~~R~LGl--se~~Id~ie~~---------------------~~~~~Eq~yqmL~~W~~~~g~~~At~~~L~ 64 (80)
T cd08313 8 EVPPRRWKEFVRRLGL--SDNEIERVELD---------------------HRRCRDAQYQMLKVWKERGPRPYATLQHLL 64 (80)
T ss_pred hCCHHHHHHHHHHcCC--CHHHHHHHHHh---------------------CCChHHHHHHHHHHHHHhcCCCcchHHHHH
Confidence 4677889999999995 66676655321 1133343444443332 2222256778888
Q ss_pred HHHHHcCCCCCHHH
Q 005884 628 LIIHNLGKFLSHRD 641 (672)
Q Consensus 628 eILktLGekLS~EE 641 (672)
.+|+.+++....+.
T Consensus 65 ~aLr~~~l~~~ae~ 78 (80)
T cd08313 65 SVLRDMELVGCAED 78 (80)
T ss_pred HHHHHcCcHHHHHH
Confidence 88888876544433
Done!