Query 005887
Match_columns 671
No_of_seqs 380 out of 2843
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 10:09:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005887.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005887hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fts_A Gephyrin; gephyrin, neu 100.0 1.8E-90 6.3E-95 760.0 15.1 410 12-435 2-418 (419)
2 1g8l_A Molybdopterin biosynthe 100.0 2.6E-90 9E-95 755.8 14.3 398 15-436 6-407 (411)
3 1uz5_A MOEA protein, 402AA lon 100.0 4.5E-89 1.6E-93 744.1 12.4 391 14-435 4-401 (402)
4 1wu2_A MOEA protein, molybdopt 100.0 2.3E-86 7.8E-91 721.5 10.3 384 13-433 4-396 (396)
5 1jlj_A Gephyrin; globular alph 100.0 1E-34 3.4E-39 285.5 2.8 170 436-632 1-173 (189)
6 3pzy_A MOG; ssgcid, seattle st 100.0 1.1E-33 3.8E-38 272.0 1.8 157 469-632 5-161 (164)
7 2is8_A Molybdopterin biosynthe 100.0 5E-33 1.7E-37 267.8 4.5 159 471-634 1-159 (164)
8 1uuy_A CNX1, molybdopterin bio 100.0 8.1E-33 2.8E-37 267.2 4.4 165 468-632 2-166 (167)
9 3rfq_A Pterin-4-alpha-carbinol 100.0 5.4E-33 1.8E-37 271.3 3.1 158 467-631 26-184 (185)
10 1jlj_A Gephyrin; globular alph 100.0 1.3E-33 4.4E-38 277.5 -2.0 153 177-348 1-169 (189)
11 3rfq_A Pterin-4-alpha-carbinol 100.0 1.8E-33 6.3E-38 274.6 -1.7 154 172-346 13-179 (185)
12 2pjk_A 178AA long hypothetical 100.0 3.2E-33 1.1E-37 272.3 -2.0 149 184-346 9-174 (178)
13 1di6_A MOGA, molybdenum cofact 100.0 4E-32 1.4E-36 267.8 3.3 164 470-638 2-179 (195)
14 2g2c_A Putative molybdenum cof 100.0 6.3E-32 2.2E-36 260.9 2.9 155 470-630 4-166 (167)
15 2pjk_A 178AA long hypothetical 100.0 7.7E-32 2.6E-36 262.6 3.1 158 466-630 10-178 (178)
16 1y5e_A Molybdenum cofactor bio 100.0 1.9E-31 6.5E-36 258.1 -1.0 145 183-347 6-165 (169)
17 3pzy_A MOG; ssgcid, seattle st 100.0 3E-31 1E-35 255.0 -0.7 139 188-346 5-155 (164)
18 2pbq_A Molybdenum cofactor bio 100.0 3.4E-30 1.2E-34 251.2 4.3 157 470-632 4-163 (178)
19 1y5e_A Molybdenum cofactor bio 100.0 2.8E-30 9.6E-35 249.8 2.7 155 467-630 9-168 (169)
20 3iwt_A 178AA long hypothetical 100.0 5.3E-30 1.8E-34 250.0 3.4 158 467-629 11-177 (178)
21 1mkz_A Molybdenum cofactor bio 100.0 2.6E-30 8.8E-35 250.7 -1.4 146 188-348 8-162 (172)
22 1uuy_A CNX1, molybdopterin bio 99.9 7.7E-30 2.6E-34 246.3 -2.3 142 187-347 2-161 (167)
23 2is8_A Molybdopterin biosynthe 99.9 2.7E-29 9.1E-34 241.8 0.3 142 190-347 1-152 (164)
24 1mkz_A Molybdenum cofactor bio 99.9 6.5E-29 2.2E-33 240.9 -0.5 148 466-622 5-156 (172)
25 2g2c_A Putative molybdenum cof 99.9 4.8E-29 1.6E-33 240.7 -2.3 141 190-346 5-162 (167)
26 2pbq_A Molybdenum cofactor bio 99.9 8E-29 2.7E-33 241.5 -1.3 141 189-349 4-163 (178)
27 1g8l_A Molybdopterin biosynthe 99.9 2.4E-28 8.3E-33 266.8 2.0 169 417-626 145-321 (411)
28 1uz5_A MOEA protein, 402AA lon 99.9 1.8E-28 6.1E-33 267.1 0.3 169 417-626 148-324 (402)
29 2fts_A Gephyrin; gephyrin, neu 99.9 1.5E-27 5E-32 261.6 0.2 174 416-626 148-331 (419)
30 1di6_A MOGA, molybdenum cofact 99.9 1.8E-27 6.3E-32 234.5 0.9 141 189-347 2-168 (195)
31 3iwt_A 178AA long hypothetical 99.9 3.5E-27 1.2E-31 230.0 -1.1 157 185-346 10-174 (178)
32 3kbq_A Protein TA0487; structu 99.9 1.7E-25 5.7E-30 215.6 1.8 144 471-621 3-168 (172)
33 1wu2_A MOEA protein, molybdopt 99.9 1.5E-25 5.1E-30 243.6 -2.8 161 417-626 150-320 (396)
34 3kbq_A Protein TA0487; structu 99.7 7.9E-19 2.7E-23 169.0 6.8 91 190-289 3-95 (172)
35 3l4e_A Uncharacterized peptida 84.7 1.5 5E-05 42.8 6.5 65 190-270 27-91 (206)
36 1ccw_A Protein (glutamate muta 78.0 3 0.0001 37.7 5.7 76 189-282 2-77 (137)
37 2yxb_A Coenzyme B12-dependent 76.8 3.5 0.00012 38.4 5.8 77 189-283 17-93 (161)
38 1y80_A Predicted cobalamin bin 73.1 4.7 0.00016 38.9 6.0 76 189-282 87-162 (210)
39 2i2x_B MTAC, methyltransferase 66.2 11 0.00038 37.7 7.1 78 188-283 121-198 (258)
40 3s99_A Basic membrane lipoprot 65.9 8 0.00027 40.7 6.3 82 189-283 25-108 (356)
41 1fy2_A Aspartyl dipeptidase; s 59.2 7.9 0.00027 38.1 4.4 62 189-270 30-91 (229)
42 3en0_A Cyanophycinase; serine 58.3 7.6 0.00026 39.8 4.3 62 189-269 55-121 (291)
43 1yqw_A Periplasmic [NIFE] hydr 56.3 9.1 0.00031 38.7 4.3 58 214-273 23-83 (264)
44 3ezx_A MMCP 1, monomethylamine 53.5 11 0.00036 36.8 4.2 77 189-282 91-168 (215)
45 3k94_A Thiamin pyrophosphokina 52.4 12 0.0004 36.9 4.3 65 216-282 51-115 (223)
46 1wl8_A GMP synthase [glutamine 50.6 24 0.00082 33.0 6.2 45 217-269 10-54 (189)
47 3lm8_A Thiamine pyrophosphokin 50.4 13 0.00045 36.5 4.3 64 216-281 52-115 (222)
48 4em8_A Ribose 5-phosphate isom 49.6 7.9 0.00027 35.6 2.4 50 222-272 24-77 (148)
49 2vvp_A Ribose-5-phosphate isom 45.6 17 0.00058 33.9 4.0 51 222-272 20-75 (162)
50 1l9x_A Gamma-glutamyl hydrolas 44.4 22 0.00075 36.6 5.2 73 189-273 29-102 (315)
51 2vpi_A GMP synthase; guanine m 44.0 33 0.0011 33.2 6.1 54 191-269 25-78 (218)
52 3ayx_B Membrane-bound hydrogen 43.3 16 0.00056 37.2 3.8 59 214-273 29-90 (283)
53 3l8m_A Probable thiamine pyrop 43.2 15 0.00053 35.6 3.5 64 216-282 49-112 (212)
54 1o1x_A Ribose-5-phosphate isom 41.9 23 0.00079 32.8 4.2 51 222-272 29-83 (155)
55 3fij_A LIN1909 protein; 11172J 41.5 36 0.0012 33.6 6.1 40 223-269 33-72 (254)
56 2vvr_A Ribose-5-phosphate isom 41.1 23 0.00078 32.6 4.1 51 222-272 18-72 (149)
57 3bul_A Methionine synthase; tr 40.6 23 0.00077 39.9 4.8 77 189-283 97-173 (579)
58 3rgw_S Membrane-bound hydrogen 39.9 22 0.00076 37.1 4.3 58 214-272 23-83 (339)
59 2ppw_A Conserved domain protei 39.7 24 0.00081 34.5 4.1 52 221-272 23-81 (216)
60 1req_A Methylmalonyl-COA mutas 39.7 27 0.00092 40.3 5.3 76 189-282 595-670 (727)
61 1qdl_B Protein (anthranilate s 39.6 37 0.0013 32.0 5.6 46 217-269 11-56 (195)
62 2xij_A Methylmalonyl-COA mutas 39.5 27 0.00093 40.4 5.3 77 189-283 603-679 (762)
63 1xrs_B D-lysine 5,6-aminomutas 38.4 15 0.00051 37.0 2.6 77 189-282 119-206 (262)
64 2obx_A DMRL synthase 1, 6,7-di 37.2 21 0.00071 33.2 3.2 77 224-305 34-116 (157)
65 3a9s_A D-arabinose isomerase; 37.0 46 0.0016 37.5 6.5 67 189-264 10-90 (595)
66 3mel_A Thiamin pyrophosphokina 36.8 25 0.00084 34.5 3.9 65 216-282 50-115 (222)
67 2bdq_A Copper homeostasis prot 36.3 37 0.0013 33.3 5.0 95 149-270 61-158 (224)
68 3he8_A Ribose-5-phosphate isom 35.3 35 0.0012 31.3 4.3 51 222-272 17-71 (149)
69 3ph3_A Ribose-5-phosphate isom 35.3 34 0.0012 32.0 4.3 51 222-272 37-91 (169)
70 2xed_A Putative maleate isomer 35.0 76 0.0026 31.8 7.3 71 191-277 147-226 (273)
71 1xmp_A PURE, phosphoribosylami 34.3 52 0.0018 30.8 5.4 87 189-294 10-98 (170)
72 3ono_A Ribose/galactose isomer 34.3 32 0.0011 33.5 4.1 51 222-272 24-80 (214)
73 3g1w_A Sugar ABC transporter; 34.2 67 0.0023 31.5 6.8 49 220-268 23-71 (305)
74 3p2y_A Alanine dehydrogenase/p 33.6 69 0.0024 33.9 7.0 91 189-298 183-308 (381)
75 3s5p_A Ribose 5-phosphate isom 33.4 31 0.0011 32.2 3.7 51 222-272 38-92 (166)
76 3ixl_A Amdase, arylmalonate de 33.0 88 0.003 30.7 7.3 88 172-284 107-205 (240)
77 3s4y_A Thiamin pyrophosphokina 32.7 28 0.00095 34.7 3.5 64 216-282 76-145 (247)
78 1ass_A Thermosome; chaperonin, 32.4 49 0.0017 30.5 4.9 81 189-290 20-100 (159)
79 3c5y_A Ribose/galactose isomer 32.3 28 0.00096 34.2 3.3 51 222-272 40-97 (231)
80 3cq9_A Uncharacterized protein 32.0 22 0.00075 35.0 2.6 65 216-282 51-116 (227)
81 3uqy_S Hydrogenase-1 small cha 31.9 23 0.0008 36.9 2.9 58 214-272 23-83 (335)
82 3l4e_A Uncharacterized peptida 30.9 9.8 0.00034 36.8 -0.2 64 471-548 27-90 (206)
83 1i1q_B Anthranilate synthase c 29.7 63 0.0022 30.2 5.4 57 217-277 10-67 (192)
84 3myr_A Hydrogenase (NIFE) smal 29.4 32 0.0011 34.7 3.3 120 490-621 23-162 (269)
85 2dgd_A 223AA long hypothetical 28.9 1E+02 0.0034 29.5 6.8 70 191-277 109-189 (223)
86 1vp7_A Exodeoxyribonuclease VI 28.4 28 0.00095 29.8 2.2 31 15-45 28-58 (100)
87 3uqy_S Hydrogenase-1 small cha 28.3 1.1E+02 0.0038 31.8 7.2 118 490-621 26-164 (335)
88 2vvr_A Ribose-5-phosphate isom 28.2 12 0.0004 34.5 -0.1 91 509-617 27-121 (149)
89 1gml_A T-complex protein 1 sub 28.1 87 0.003 29.3 6.0 44 243-290 63-106 (178)
90 3m9w_A D-xylose-binding peripl 27.9 1.2E+02 0.0041 29.9 7.5 48 220-268 21-68 (313)
91 3k7p_A Ribose 5-phosphate isom 27.6 44 0.0015 31.6 3.7 52 221-272 38-95 (179)
92 2wpn_A Periplasmic [nifese] hy 27.5 58 0.002 33.6 4.9 57 214-272 58-118 (317)
93 3ksm_A ABC-type sugar transpor 27.4 99 0.0034 29.6 6.6 49 220-268 19-69 (276)
94 1yqw_A Periplasmic [NIFE] hydr 27.2 16 0.00054 36.9 0.6 119 489-622 25-163 (264)
95 3n0v_A Formyltetrahydrofolate 26.7 60 0.002 33.0 4.9 82 189-270 89-178 (286)
96 3rgw_S Membrane-bound hydrogen 26.0 78 0.0027 33.0 5.6 138 470-621 5-164 (339)
97 2q5c_A NTRC family transcripti 25.9 56 0.0019 31.0 4.2 45 222-270 19-63 (196)
98 3lou_A Formyltetrahydrofolate 25.7 61 0.0021 33.0 4.7 80 189-268 94-181 (292)
99 4grd_A N5-CAIR mutase, phospho 25.5 96 0.0033 29.1 5.5 87 189-294 11-99 (173)
100 3ihk_A Thiamin pyrophosphokina 24.8 59 0.002 31.5 4.2 65 216-282 46-111 (218)
101 3ors_A N5-carboxyaminoimidazol 24.7 97 0.0033 28.8 5.4 87 189-294 2-90 (163)
102 1o1x_A Ribose-5-phosphate isom 24.6 13 0.00043 34.5 -0.6 91 509-617 38-132 (155)
103 1cc1_S Hydrogenase (small subu 24.3 74 0.0025 32.3 5.0 59 214-273 24-85 (283)
104 2hqb_A Transcriptional activat 24.3 1E+02 0.0035 30.6 6.2 45 222-267 28-72 (296)
105 3lp6_A Phosphoribosylaminoimid 24.1 87 0.003 29.4 5.0 89 189-296 6-96 (174)
106 3oow_A Phosphoribosylaminoimid 24.0 1.2E+02 0.004 28.3 5.8 88 190-296 5-94 (166)
107 2fqx_A Membrane lipoprotein TM 24.0 95 0.0033 31.3 5.9 44 222-267 28-71 (318)
108 4dio_A NAD(P) transhydrogenase 23.4 1.2E+02 0.0042 32.3 6.7 49 248-298 266-318 (405)
109 1di0_A Lumazine synthase; tran 23.2 40 0.0014 31.3 2.5 77 224-305 33-115 (158)
110 2ywd_A Glutamine amidotransfer 22.5 84 0.0029 29.0 4.7 48 190-268 2-49 (191)
111 3trh_A Phosphoribosylaminoimid 22.0 1.3E+02 0.0045 28.0 5.7 86 189-293 5-92 (169)
112 3kuu_A Phosphoribosylaminoimid 21.9 1.2E+02 0.004 28.5 5.4 85 190-293 12-98 (174)
113 3ayx_B Membrane-bound hydrogen 21.6 54 0.0018 33.3 3.3 25 597-621 149-173 (283)
114 3pef_A 6-phosphogluconate dehy 21.2 91 0.0031 30.9 5.0 58 191-267 2-66 (287)
115 1fui_A L-fucose isomerase; ket 21.1 1.3E+02 0.0044 33.8 6.5 76 189-264 5-85 (591)
116 3sgw_A Ribose 5-phosphate isom 21.0 53 0.0018 31.2 2.8 51 222-272 46-103 (184)
117 3uug_A Multiple sugar-binding 20.4 1.6E+02 0.0053 29.2 6.6 48 220-268 22-69 (330)
118 3pdu_A 3-hydroxyisobutyrate de 20.3 1.2E+02 0.0042 29.9 5.7 58 191-267 2-66 (287)
119 1o4v_A Phosphoribosylaminoimid 20.3 1.3E+02 0.0044 28.5 5.3 76 190-284 13-90 (183)
120 2c92_A 6,7-dimethyl-8-ribityll 20.1 35 0.0012 31.7 1.4 76 224-305 40-118 (160)
No 1
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=100.00 E-value=1.8e-90 Score=759.97 Aligned_cols=410 Identities=46% Similarity=0.738 Sum_probs=372.1
Q ss_pred cccccccHHHHHHHHHHhhhcCCCcchhHHHHHhHHhhhhccCCCCCCCCCccccCceEEEecCCCCCCceeeecccCCC
Q 005887 12 SQEKMISAEEALQKVLSVAQRLPPVTVPLYEALGKVLAEDIRAPDPLPPYPASVKDGYAVVASDGPGEYPVITESRAGND 91 (671)
Q Consensus 12 ~~~~~is~~eA~~~i~~~~~~~~~e~v~l~~A~GrvlAedI~a~~~~P~f~~SamDGyAv~~~d~~~~l~v~g~~~aG~~ 91 (671)
|++.|+|++||++++++++.+...|+|+|.+|+||||||||+|++|+|+|++|+||||||+++|++..|+++++++||+.
T Consensus 2 s~~~~~s~~eA~~~i~~~~~~~~~e~v~l~~A~GrvLAedv~A~~~~P~f~~SamDGyAv~~~D~~~~l~v~~~i~aG~~ 81 (419)
T 2fts_A 2 SPFPLTSMDKAFITVLEMTPVLGTEIINYRDGMGRVLAQDVYAKDNLPPFPASVKDGYAVRAADGPGDRFIIGESQAGEQ 81 (419)
T ss_dssp CSCCEEEHHHHHHHHHHHSCCCCEEEEEGGGCTTCBBSSCEECSSCBSSSCEESSSEEEECGGGCSCEEEEEEECCTTSC
T ss_pred CCCCCCCHHHHHHHHHhcCCCCCcEEEEHHHhCCCeeeeeeEeCCCCCCCCCcccceEEEeeccCCcceEEEEEEeCCCC
Confidence 56779999999999999888888899999999999999999999999999999999999999999888999999999986
Q ss_pred ceEEEEeeceEEEEeeCCCCCCCCcceEEeccccccccc--ccccceEEEEEeecCccceeccccccccceEEeccCccc
Q 005887 92 GIGVIVTSGTVAYVTTGGPIPDGADAVVQVEDTDEVNHT--AAESKRVKILVQTNKGVDIRPVGYDIEKDAIILKSGERI 169 (671)
Q Consensus 92 ~~~~~l~~g~av~I~TGa~lP~gaDaVV~~E~~~~~~~~--~~~~~~i~i~~~~~~g~nir~~Ged~~~G~~ll~~G~~l 169 (671)
+ +..|++|+|+||||||++|+|+|||||+|+++..++. ..+.+.|.|.+++++|+|||++|||+++||+|+++|++|
T Consensus 82 ~-~~~l~~g~avrI~TGa~~P~gaDaVv~~E~~~~~~~~~~~~~~~~v~i~~~~~~g~nIr~~Gedi~~G~~ll~~G~~l 160 (419)
T 2fts_A 82 P-TQTVMPGQVMRVTTGAPIPCGADAVVQVEDTELIRESDDGTEELEVRILVQARPGQDIRPIGHDIKRGECVLAKGTHM 160 (419)
T ss_dssp C-CCCCCTTEEEEECTTCBCCTTCCEEEEGGGEEEEEESTTSSCEEEEEECSCCCTTTTEECTTSSBCTTCEEECTTCBC
T ss_pred C-CCccCCCeEEEEeCCCCCCCCCcEEEEEEeEEeccccccCCCCCeEEEecCCCCCCCCccCCcCcCCCCEEECCCCCc
Confidence 5 3579999999999999999999999999998753210 001247888889999999999999999999999999999
Q ss_pred ccchhhhhhhcceeEEEEeecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHH
Q 005887 170 GASEIGLLATAGIMMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEK 249 (671)
Q Consensus 170 ~p~~i~lLas~Gi~~v~V~~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~ 249 (671)
+|.+|++||++|+.+|+|||+|||+||+|||||++++++ +.+|||+|+|+++|.++|+++|+++.++++++||++.|++
T Consensus 161 ~p~~iglLas~G~~~v~V~~~prv~IistGdEl~~~g~~-~~~G~i~dsN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~ 239 (419)
T 2fts_A 161 GPSEIGLLATVGVTEVEVNKFPVVAVMSTGNELLNPEDD-LLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLN 239 (419)
T ss_dssp CHHHHHHHHHHTCCEEEEECCCCEEEEEECTTEECTTSC-CCTTCEECCHHHHHHHHHHTTTCCEEEEEEECSSHHHHHH
T ss_pred CHHHHHHHHhCCCCeeEecCCCEEEEEEechhccCCCCC-CCCCcEecCchHHHHHHHHHCCCEEEEEeecCCCHHHHHH
Confidence 999999999999999999999999999999999999987 8899999999999999999999999999999999999999
Q ss_pred HhhhhhcccccEEEecCCcccCCccchhhhh-cccc-eEEEecccccCCCcceeeEeccccCchhhhhhhhhccCCCCce
Q 005887 250 TLDNAFSAGIDILLTSGGVSMGDKDFVKPLL-QKKG-TIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPV 327 (671)
Q Consensus 250 ~l~~a~~~~~DiVIttGG~s~G~~D~~~~~l-~~~g-~i~f~~v~~~PGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~ 327 (671)
+|++++++ +|+||||||+|+|++|+|++++ +++| +++||+++|+||||+++|..+.. .++++||+|||||.
T Consensus 240 ~l~~a~~~-~DlVittGG~s~g~~D~t~~al~~~lg~~~~f~~v~~~PG~p~~~g~~~~~------~~~~~v~~LPG~P~ 312 (419)
T 2fts_A 240 ALNEGISR-ADVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDID------GVRKIIFALPGNPV 312 (419)
T ss_dssp HHHHHHHH-CSEEEEESCCSSSCCHHHHHHHHTTTCCEEEESEEECBSCTTCEEEEEEET------TEEEEEEEECSSHH
T ss_pred HHHHHHhc-CCEEEEcCCCcCCCcccHHHHHHHHcCCceEEeEEecCCCCceEEEEEeec------CCCeEEEECCCCHH
Confidence 99999975 9999999999999999999999 6787 99999999999999999987410 01489999999999
Q ss_pred eEEEEEeEeeechhhcccCCCCCcccccccccccccccCCCChhhhhheeeeeccCCCCCccceecccccchhhhhcccc
Q 005887 328 SCIVCFHLYIVPAIRHLSGWANPHLLRVPARICQPLKTDRVRPEFHRAILRWKANDGSGSSGFVAESTGHQMSSRLLSMK 407 (671)
Q Consensus 328 aa~~~~~~~v~P~L~~l~G~~~~~~~~~~a~l~~~~~~~~~r~~f~r~~~~~~~~~g~~~~~~~~~~~~~~~s~~l~sl~ 407 (671)
|++++|+.||.|+|++++|...+.++.++|+|.++++++. |++|+|+++.+. +++. . +++.+.+.|+|++|++|+
T Consensus 313 sa~~~~~~~v~P~L~~~~g~~~~~~~~~~a~l~~~~~~~~-r~~f~r~~l~~~-~~~~-~--~~~~~~~~~~S~~l~sl~ 387 (419)
T 2fts_A 313 SAVVTCNLFVVPALRKMQGILDPRPTIIKARLSCDVKLDP-RPEYHRCILTWH-HQEP-L--PWAQSTGNQMSSRLMSMR 387 (419)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEESSCEECCS-SCEEEEEEEECC-TTCS-S--CEEEECCSCSSSCCCCSS
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCccceEEEeCCCcCCCC-ceEEEEEEEEEc-CCce-e--EEEEeCCCCCcHHHHHHH
Confidence 9999999999999999999876556678999999999988 999999998763 2221 1 456778889999999999
Q ss_pred ccccccccc---cccceecccceEEEEEEec
Q 005887 408 SANALLELP---ATGSVISAGTLVSAIVISD 435 (671)
Q Consensus 408 ~an~li~iP---~g~~~i~aG~~V~v~ll~~ 435 (671)
+||||+++| ++.+.+++|+.|++++|+.
T Consensus 388 ~An~li~ip~~~~~~~~~~~G~~V~v~~~~~ 418 (419)
T 2fts_A 388 SANGLLMLPPKTEQYVELHKGEVVDVMVIGR 418 (419)
T ss_dssp CCCEEEEECCCCSSCSEECTTCEEEEEECSC
T ss_pred HCcEEEEECCccCCCCccCCCCEEEEEEeec
Confidence 999999999 5888999999999999854
No 2
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=100.00 E-value=2.6e-90 Score=755.79 Aligned_cols=398 Identities=34% Similarity=0.544 Sum_probs=372.1
Q ss_pred ccccHHHHHHHHHHhhhcCC-CcchhHHHHHhHHhhhhccCCCCCCCCCccccCceEEEecCC--CCCCceeeecccCCC
Q 005887 15 KMISAEEALQKVLSVAQRLP-PVTVPLYEALGKVLAEDIRAPDPLPPYPASVKDGYAVVASDG--PGEYPVITESRAGND 91 (671)
Q Consensus 15 ~~is~~eA~~~i~~~~~~~~-~e~v~l~~A~GrvlAedI~a~~~~P~f~~SamDGyAv~~~d~--~~~l~v~g~~~aG~~ 91 (671)
.|+|++||++++++++.++. .|+|+|.+|+||||||||+|++|+|+||+|+||||||+++|+ +..|+++++++||+.
T Consensus 6 ~~~s~~eA~~~i~~~~~~~~~~e~v~l~~A~GrvLAedv~a~~~~P~f~~SamDGyAv~~~D~~~~~~l~v~~~i~aG~~ 85 (411)
T 1g8l_A 6 GLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRLADIASGQPLPVAGKSFAGQP 85 (411)
T ss_dssp -CBCHHHHHHHHHHHCCCCCCEEEEEGGGCTTCBBSSCEECSSCBSSSCEESSSEEEECHHHHHHCSCBCEEEEEBTTBC
T ss_pred CCcCHHHHHHHHHhhCcCcCCcEEEEHHHhCCCeeeeeeEcCCCCCCCcccCCCceEEeHHHcCCCceEEEEEEEECCCC
Confidence 58999999999999988774 689999999999999999999999999999999999999997 357999999999986
Q ss_pred ceEEEEeeceEEEEeeCCCCCCCCcceEEecccccccccccccceEEEEEeecCccceeccccccccceEEeccCccccc
Q 005887 92 GIGVIVTSGTVAYVTTGGPIPDGADAVVQVEDTDEVNHTAAESKRVKILVQTNKGVDIRPVGYDIEKDAIILKSGERIGA 171 (671)
Q Consensus 92 ~~~~~l~~g~av~I~TGa~lP~gaDaVV~~E~~~~~~~~~~~~~~i~i~~~~~~g~nir~~Ged~~~G~~ll~~G~~l~p 171 (671)
+ ...+++|+|+||||||++|+|+|||||+|+++..+ +.|.|.+++++|+|||++|||+++||+|+++|++|+|
T Consensus 86 ~-~~~l~~g~a~rI~TGa~~P~gadaVV~~E~~~~~~------~~v~i~~~~~~g~~ir~~Gedv~~G~~vl~~G~~l~p 158 (411)
T 1g8l_A 86 Y-HGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQMD------NGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTT 158 (411)
T ss_dssp C-CSCCCTTCEEEECTTCBCCTTCCEEEEGGGEEEET------TEEEECSCCCTTTTEECTTSSBCTTSEEECTTCBCCT
T ss_pred C-CcccCCCcEEEEccCCCCCCCccEEEEEeeEEecC------CEEEEeCCCCCCCCEecCCcEecCCCEEEcCCcEECH
Confidence 4 35799999999999999999999999999987543 4799999999999999999999999999999999999
Q ss_pred chhhhhhhcceeEEEEeecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHh
Q 005887 172 SEIGLLATAGIMMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTL 251 (671)
Q Consensus 172 ~~i~lLas~Gi~~v~V~~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l 251 (671)
.+|++||++|+.+|+|||+|||+||+|||||++++++ +.+|+|+|+|+++|.++|+++|+++.++++++||++.|+++|
T Consensus 159 ~~i~llas~G~~~V~V~~~~rv~iistGdEl~~~g~~-~~~G~i~dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~al 237 (411)
T 1g8l_A 159 AELPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQP-LGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAF 237 (411)
T ss_dssp TTHHHHHHTTCCEEEEECCCEEEEEEECTTEECTTSC-CCSSCEECCHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHH
T ss_pred HHHHHHHhCCCceEEecCCCEEEEEEcCccccCCCCC-CCCCcEEcCchHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHH
Confidence 9999999999999999999999999999999999987 889999999999999999999999999999999999999999
Q ss_pred hhhhcccccEEEecCCcccCCccchhhhhcccceEEEecccccCCCcceeeEeccccCchhhhhhhhhccCCCCceeEEE
Q 005887 252 DNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKGTIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIV 331 (671)
Q Consensus 252 ~~a~~~~~DiVIttGG~s~G~~D~~~~~l~~~g~i~f~~v~~~PGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~ 331 (671)
+++++ ++|+||||||+|+|++|+|+++++++|+++||+++|+||||+++|.++ +++||+|||||.|+++
T Consensus 238 ~~a~~-~~DlvittGG~s~g~~D~t~~al~~~G~i~f~~va~~PG~p~~~g~~~----------~~~v~~LPGnP~sa~~ 306 (411)
T 1g8l_A 238 IEADS-QADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLS----------NSWFCGLPGNPVSATL 306 (411)
T ss_dssp HHHHH-HCSEEEECSSSCSSSCSHHHHHHHHHSEEEEEEBSEESCCEEEEEECS----------SSEEEECCSSHHHHHH
T ss_pred HHHhh-cCCEEEECCCCCCCCcccHHHHHHhcCcEEEEEEEeeCCCcEEEEEEC----------CEEEEEcCCChHHHHH
Confidence 99997 599999999999999999999999999999999999999999999986 5899999999999999
Q ss_pred EEeEeeechhhcccCCCC-CcccccccccccccccCCCChhhhhheeeeeccCCCCCccceecccccchhhhhccccccc
Q 005887 332 CFHLYIVPAIRHLSGWAN-PHLLRVPARICQPLKTDRVRPEFHRAILRWKANDGSGSSGFVAESTGHQMSSRLLSMKSAN 410 (671)
Q Consensus 332 ~~~~~v~P~L~~l~G~~~-~~~~~~~a~l~~~~~~~~~r~~f~r~~~~~~~~~g~~~~~~~~~~~~~~~s~~l~sl~~an 410 (671)
+|+.||.|+|++++|... ..++.++|+|.++++++.+|++|+|+++.+. .+|. +++.|+++|+|+++++|++||
T Consensus 307 ~~~~~v~P~L~~l~g~~~~~~~~~~~a~l~~~~~~~~~r~~f~r~~l~~~-~~g~----~~~~p~~~~~S~~l~sl~~Ad 381 (411)
T 1g8l_A 307 TFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRN-ADGE----LEVTTTGHQGSHIFSSFSLGN 381 (411)
T ss_dssp HHHHTHHHHHHHHHTCCCCSCSCCEEEEESSCBCCCTTSEEEEEEEEEEC-TTSC----EEEEECSCCCTTCCTHHHHCS
T ss_pred HHHHHHHHHHHHHhCCCccCCCceEEEEccccccCCCCceEEEEEEEEEc-cCCe----EEEEECCCCCcHHHHHHHHCC
Confidence 999999999999999875 4456789999999999999999999998652 3454 778888889999999999999
Q ss_pred cccccccccceecccceEEEEEEecc
Q 005887 411 ALLELPATGSVISAGTLVSAIVISDI 436 (671)
Q Consensus 411 ~li~iP~g~~~i~aG~~V~v~ll~~l 436 (671)
||+++|++.+.+++|+.|++++|..+
T Consensus 382 ~li~ip~~~~~~~~G~~V~v~~~~~~ 407 (411)
T 1g8l_A 382 CFIVLERDRGNVEVGEWVEVEPFNAL 407 (411)
T ss_dssp EEEEECTTCCCBCTTCEEEEEECCGG
T ss_pred EEEEECCCCCcCCCCCEEEEEEchHh
Confidence 99999999999999999999999755
No 3
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=100.00 E-value=4.5e-89 Score=744.06 Aligned_cols=391 Identities=33% Similarity=0.529 Sum_probs=357.1
Q ss_pred cccccHHHHHHHHHHhhhcCCCcchhHHHHHhHHhhhhccCCCCCCCCCccccCceEEEecCC-------CCCCceeeec
Q 005887 14 EKMISAEEALQKVLSVAQRLPPVTVPLYEALGKVLAEDIRAPDPLPPYPASVKDGYAVVASDG-------PGEYPVITES 86 (671)
Q Consensus 14 ~~~is~~eA~~~i~~~~~~~~~e~v~l~~A~GrvlAedI~a~~~~P~f~~SamDGyAv~~~d~-------~~~l~v~g~~ 86 (671)
..|+|++||++++++++.+...|+|+|.||+||||||||+|++|+|+|++|+||||||+++|+ |..|++++++
T Consensus 4 ~~~~s~~eA~~~i~~~~~~~~~e~v~l~~A~GrvLA~dv~a~~~~P~f~~SamDGyAv~~~D~~~a~~~~p~~l~v~~~i 83 (402)
T 1uz5_A 4 LKVVPLEKALEVVQSFKISPGIEEVPIEKGLGRIAAEDIYSPIDVPPFDRATVDGYAVRAEDTFMASEASPVRLKVIGSV 83 (402)
T ss_dssp -CCBCHHHHHHHHHHCCCCCCEEEEEGGGCTTCBBSSCEECSSCBSSSCEESSSEEEECGGGGTTCCSSSCEEEEEEEEE
T ss_pred cCCCCHHHHHHHHHhcCCCCCcEEEEHHHhCCCeeeeEEEcCCCCCCCcccccCcEEEeehhccccccCCCeEEEEeeEE
Confidence 469999999999999887777899999999999999999999999999999999999999996 3458899999
Q ss_pred ccCCCceEEEEeeceEEEEeeCCCCCCCCcceEEecccccccccccccceEEEEEeecCccceeccccccccceEEeccC
Q 005887 87 RAGNDGIGVIVTSGTVAYVTTGGPIPDGADAVVQVEDTDEVNHTAAESKRVKILVQTNKGVDIRPVGYDIEKDAIILKSG 166 (671)
Q Consensus 87 ~aG~~~~~~~l~~g~av~I~TGa~lP~gaDaVV~~E~~~~~~~~~~~~~~i~i~~~~~~g~nir~~Ged~~~G~~ll~~G 166 (671)
+||+.+. ..+++|+|+|||||+++|+|+|+|||+|+++..+ ++|.|.+++.+|+|||++|||+++||+|+++|
T Consensus 84 ~aG~~~~-~~l~~g~a~~i~TGa~~P~GadaVV~~E~~~~~~------~~v~i~~~~~~g~nir~~Gedv~~G~~ll~~G 156 (402)
T 1uz5_A 84 HAGEEPK-FKLGKGEAAYISTGAMLPGNADAVIQFEDVERVN------GEILIYKPAYPGLGVMKKGIDIEKGRLLVKKG 156 (402)
T ss_dssp CTTCCCC-CBCCTTEEEEECTTCBCCBTCCEEEEGGGEEEET------TEEEECSCCCTTTTEECTTSSBCTTCEEECTT
T ss_pred ECCCCCC-CccCCCcEEEEccCCCCCCCCCEEEEEEEEEecC------CEEEEeCCCCCCCCeecCCcEecCCCEEEcCC
Confidence 9998654 5799999999999999999999999999987543 47999999999999999999999999999999
Q ss_pred cccccchhhhhhhcceeEEEEeecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHH
Q 005887 167 ERIGASEIGLLATAGIMMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEE 246 (671)
Q Consensus 167 ~~l~p~~i~lLas~Gi~~v~V~~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~ 246 (671)
++|+|.+|++||++|+.+|+|||+|||+||+|||||++++++ +..|+|+|+|+++|.++|+++|+++.++++++||++.
T Consensus 157 ~~l~p~~i~llas~G~~~V~V~~~prv~IistGdEl~~~g~~-~~~G~i~DsN~~~L~~~l~~~G~~v~~~~iv~Dd~~~ 235 (402)
T 1uz5_A 157 ERLGFKQTALLSAVGINKVKVFRKPKVAVISTGNEIVPPGNE-LKPGQIYDINGRALCDAINELGGEGIFMGVARDDKES 235 (402)
T ss_dssp CBCCHHHHHHHHHTTCCEEEEECCCEEEEEEECTTEECTTSC-CCTTCEECCHHHHHHHHHHHHTSEEEEEEEECSSHHH
T ss_pred CEECHHHHHHHHhCCCceeeecCCCEEEEEEcCccccCCCCC-CCCCcEEcchHHHHHHHHHhCCCeEEEEEEeCCCHHH
Confidence 999999999999999999999999999999999999999987 8899999999999999999999999999999999999
Q ss_pred HHHHhhhhhcccccEEEecCCcccCCccchhhhhcccceEEEecccccCCCcceeeEeccccCchhhhhhhhhccCCCCc
Q 005887 247 LEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKGTIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNP 326 (671)
Q Consensus 247 i~~~l~~a~~~~~DiVIttGG~s~G~~D~~~~~l~~~g~i~f~~v~~~PGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP 326 (671)
|+++|++++++ +|+||||||+|+|++|+|+++++++|+++||+++|+||+|++||.++ +++||+|||||
T Consensus 236 i~~~l~~a~~~-~DlVittGG~s~g~~D~t~~al~~~G~~~f~~va~~PG~p~~~g~~~----------~~~v~~LPG~P 304 (402)
T 1uz5_A 236 LKALIEKAVNV-GDVVVISGGASGGTKDLTASVIEELGEVKVHGIAIQPGKPTIIGVIK----------GKPVFGLPGYP 304 (402)
T ss_dssp HHHHHHHHHHH-CSEEEEECCC-----CHHHHHHHHHSEEEEECBSEESCTTCEEEEET----------TEEEEEECSSH
T ss_pred HHHHHHHHhhC-CCEEEEcCCCCCCCcccHHHHHHhhCCEEEeeEeecCCCCEEEEEEC----------CEEEEECCCCH
Confidence 99999999974 99999999999999999999999999999999999999999999986 58999999999
Q ss_pred eeEEEEEeEeeechhhcccCCCCCcccccccccccccccCCCChhhhhheeeeeccCCCCCccceecccccchhhhhccc
Q 005887 327 VSCIVCFHLYIVPAIRHLSGWANPHLLRVPARICQPLKTDRVRPEFHRAILRWKANDGSGSSGFVAESTGHQMSSRLLSM 406 (671)
Q Consensus 327 ~aa~~~~~~~v~P~L~~l~G~~~~~~~~~~a~l~~~~~~~~~r~~f~r~~~~~~~~~g~~~~~~~~~~~~~~~s~~l~sl 406 (671)
.|++++|++|+.|+|++++|.... .+.++|+|.++++++.+|++|+|+++ .+| ++.|+ .|+|+++++|
T Consensus 305 ~sa~~~~~~~v~P~L~~~~g~~~~-~~~~~a~l~~~~~~~~~r~~f~r~~l----~~g------~~~p~-~~~S~~l~sl 372 (402)
T 1uz5_A 305 TSCLTNFTLLVVPLLLRALGREGK-IGKKVARLKHKVFSVKGRRQFLPVKL----EGD------LAVPI-LKGSGAVTSF 372 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSC-CCEEEEEESSCCBCC--CEEEEEEEE----SSS------EEEEC-CSTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCC-CceEEEEeCCcccCCCCCeEEEEEEE----eCC------EEEEc-CCCcHHHHHH
Confidence 999999999999999999997654 35788999999999999999999987 233 24556 4889999999
Q ss_pred cccccccccccccceecccceEEEEEEec
Q 005887 407 KSANALLELPATGSVISAGTLVSAIVISD 435 (671)
Q Consensus 407 ~~an~li~iP~g~~~i~aG~~V~v~ll~~ 435 (671)
++||||+++|++.+.+++|+.|++++|+.
T Consensus 373 ~~An~li~ip~~~~~~~~G~~V~v~~~~~ 401 (402)
T 1uz5_A 373 IDADGFVEIPETVESLDEGEEVEVTLFKG 401 (402)
T ss_dssp HHCCEEEEECSSCCBCCSEEEEEEEECCC
T ss_pred HhCCEEEEECCCCCcCCCCCEEEEEEecC
Confidence 99999999999999999999999999853
No 4
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=100.00 E-value=2.3e-86 Score=721.48 Aligned_cols=384 Identities=32% Similarity=0.489 Sum_probs=346.2
Q ss_pred ccccccHHHHHHHHHHhhhcC-CCcchhHHHHHhHHhhhhccCCCCCCCCCccccCceEEEecCC-------CCCCceee
Q 005887 13 QEKMISAEEALQKVLSVAQRL-PPVTVPLYEALGKVLAEDIRAPDPLPPYPASVKDGYAVVASDG-------PGEYPVIT 84 (671)
Q Consensus 13 ~~~~is~~eA~~~i~~~~~~~-~~e~v~l~~A~GrvlAedI~a~~~~P~f~~SamDGyAv~~~d~-------~~~l~v~g 84 (671)
...|+|++||++++++++.+. ..|+|+|.||+||||||||+|++|+|+|++|+||||||+++|+ |..|++++
T Consensus 4 ~~~~~s~~eA~~~i~~~~~~~~~~e~v~l~~A~GrvLA~dv~a~~~~P~f~~SamDGyAv~~~d~~~a~~~~p~~l~v~~ 83 (396)
T 1wu2_A 4 FKKLVPYREALKLLLDDINEIEDTEKVPLREAVGRVLAEDIVTEFDIPPFDRAAVDGYAIRAEDTFQAREYNPIELTVIE 83 (396)
T ss_dssp --CCBCHHHHHHHHHHHCCCCCCEEEEEGGGCTTCBBSSCEECSSCBSSSCEESSSEEEECGGGGTTCBTTBCEEEEEEE
T ss_pred ccCCCCHHHHHHHHHhhccCcCCceEEEHHHhCCCeeeeeEEcCCCCCCCcccccCcEEEehhhccccccCCCeEEEEee
Confidence 346899999999999988777 7899999999999999999999999999999999999999996 34589999
Q ss_pred ecccCCCceEEEEeeceEEEEeeCCCCCCCCcceEEecccccccccccccceEEEEEeecCccceeccccccccceEEec
Q 005887 85 ESRAGNDGIGVIVTSGTVAYVTTGGPIPDGADAVVQVEDTDEVNHTAAESKRVKILVQTNKGVDIRPVGYDIEKDAIILK 164 (671)
Q Consensus 85 ~~~aG~~~~~~~l~~g~av~I~TGa~lP~gaDaVV~~E~~~~~~~~~~~~~~i~i~~~~~~g~nir~~Ged~~~G~~ll~ 164 (671)
+++||+.+. ..|++|+|+|||||+++|+|+|+|||+|+++..+ ++|.|.+++.+|+|||++|||+++||+|++
T Consensus 84 ~i~aG~~~~-~~l~~g~a~~I~TGa~~P~GadaVV~~E~~~~~~------~~v~i~~~~~~g~nir~~Gedv~~G~~ll~ 156 (396)
T 1wu2_A 84 EVPAGNVAK-EEVTTGKAIKVLTGTRIPKGANAVIMQEMVKREG------DKIYVLRPVAPGQNIAFTGEDVKKGEVVLR 156 (396)
T ss_dssp ECCTTCCCS-SCCCTTEEEEECTTCBCCTTCCEEEEGGGSEEET------TEEEECSCCCTTTTEECTTSSBCTTCEEEC
T ss_pred EEECCCCCC-CccCCCcEEEEccCCCCCCCCCEEEEEEEEEecC------CEEEEeCCCCCCCCcccCCcEEcCCCEeec
Confidence 999998654 5799999999999999999999999999997543 489999999999999999999999999999
Q ss_pred cCcccccchhhhhhhcceeEEEEeecceEEEeecCCccc-ccccccccccccccchhHHHHHHHHHhccceeeeecccCC
Q 005887 165 SGERIGASEIGLLATAGIMMVKVYRTPTIAVLSTGDELV-EPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDD 243 (671)
Q Consensus 165 ~G~~l~p~~i~lLas~Gi~~v~V~~~prV~iistGdElv-~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd 243 (671)
+|++|+|.+|++|+++|+.+|+|||+|||+||+|||||+ +++++.+.+|+|+|+|+++|.++|+++|+++.++++++||
T Consensus 157 ~G~~l~p~~i~llas~G~~~V~V~~~prv~IistGdEl~~~~g~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd 236 (396)
T 1wu2_A 157 KGTILRPQDVAMLKALGIKKVPVKVKPKVGIIITGSELIEEPSEEGFKEGKIVETNSIMLQGLVEKFFGEPILYGVLPDD 236 (396)
T ss_dssp TTCBCCHHHHHHHHHTTCSEEEEECCCEEEEEEECTTEESSCCHHHHHTTCEECCHHHHHHHHHHHTTCEEEEEEEECSC
T ss_pred CCcEEcHHHHHHHHhCCCceeeecCCCEEEEEEcCcccccCCCCcccCCCcEecchHHHHHHHHHHCCCEEEEEEEeCCC
Confidence 999999999999999999999999999999999999999 9886425679999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcccccEEEecCCcccCCccchhhhhcccceEEEecccccCCCcceeeEeccccCchhhhhhhhhccCC
Q 005887 244 EEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKGTIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLP 323 (671)
Q Consensus 244 ~~~i~~~l~~a~~~~~DiVIttGG~s~G~~D~~~~~l~~~g~i~f~~v~~~PGkp~~~a~~~~~~~~~~~~~~~~v~~LP 323 (671)
++.|+++|++++++ +|+||||||+|+|++|+ ++++|+++||+++|+||+|+++| ++||+||
T Consensus 237 ~~~i~~~l~~a~~~-~DlvittGG~s~g~~D~----l~~~G~i~f~~va~~PG~p~~~g--------------~~v~~LP 297 (396)
T 1wu2_A 237 ESIIKETLEKAKNE-CDIVLITGGSAFGDKDY----AHKFVNLLFHGTTIKPGRPFGYG--------------EKVFIMS 297 (396)
T ss_dssp HHHHTTHHHHHHHC-SEEEECC--------CC----STTTCCCSEESBSEESCTTCEEE--------------TTEEECC
T ss_pred HHHHHHHHHHHhhC-CCEEEEeCCCCCChhhH----HhhcCCEEEeeecccCCCceEcc--------------CeEEECC
Confidence 99999999999974 99999999999999999 67788999999999999999997 3799999
Q ss_pred CCceeEEEEEeEeeechhhcccCCCCCcccccccccccccccCCCChhhhhheeeeeccCCCCCccceecccccchhhhh
Q 005887 324 GNPVSCIVCFHLYIVPAIRHLSGWANPHLLRVPARICQPLKTDRVRPEFHRAILRWKANDGSGSSGFVAESTGHQMSSRL 403 (671)
Q Consensus 324 GnP~aa~~~~~~~v~P~L~~l~G~~~~~~~~~~a~l~~~~~~~~~r~~f~r~~~~~~~~~g~~~~~~~~~~~~~~~s~~l 403 (671)
|||.|++++|++|+.|+|++++|.... ++.++|+|.++++++.+|++|+|+++. +| ++.|++.|+|+++
T Consensus 298 G~P~sa~~~~~~~v~P~L~~l~g~~~~-~~~~~a~l~~~~~~~~~r~~f~r~~l~----~g------~~~p~~~~~S~~l 366 (396)
T 1wu2_A 298 GYPVSVFAQFNLFVKHALAKMVGAQNY-EVKVKAILQDDIPSQLGRYEFIKIYYE----NG------IARVIKKKGSGIL 366 (396)
T ss_dssp SSHHHHHHHHHHTHHHHHHHHHTCSSC-SCEEEEEESSCEECCTTCEEEEEEEEE----TT------EEEECCCCSSCCT
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCC-CceEEEEeCCcccCCCCCeEEEEEEEE----CC------EEEECCCCCcHHH
Confidence 999999999999999999999997654 457889999999999999999999874 33 3567778899999
Q ss_pred ccccccccccccccccceecccceEEEEEE
Q 005887 404 LSMKSANALLELPATGSVISAGTLVSAIVI 433 (671)
Q Consensus 404 ~sl~~an~li~iP~g~~~i~aG~~V~v~ll 433 (671)
++|++||||+++|++.+.+++|+.|++++|
T Consensus 367 ~sl~~An~li~ip~~~~~~~~G~~V~v~~~ 396 (396)
T 1wu2_A 367 SSLLASNAYLEIPEDSEGYRRGEEVWITLY 396 (396)
T ss_dssp HHHHSCCEEEEECTTCCEECTTCEEEEEEC
T ss_pred HHHHhCCEEEEECCCCCcCCCCCEEEEEEC
Confidence 999999999999999999999999999875
No 5
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=100.00 E-value=1e-34 Score=285.48 Aligned_cols=170 Identities=45% Similarity=0.754 Sum_probs=150.6
Q ss_pred ccCCCCCcceeeeEecccccCCCCceeeccCCCceEEEEEEEEeecccccCCCCCCCCCceEEEecC---CccccCCceE
Q 005887 436 ISSTDNSKIDTSLVLGSTLQGSKPKEVTTDCSGYTEFSVAILTVSDTVASGAGPDRSGPRAVSVVNS---SSEKLGGAKV 512 (671)
Q Consensus 436 l~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIt~GdEl~~G~~~D~n~~~l~~~L~~---~~~~~~G~~v 512 (671)
|++.|+.+|.| +++++|+||+||||++.|++.|+|+++|+++|++ + |+++
T Consensus 1 ~a~~g~~~v~v----------------------~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~-----G~~v 53 (189)
T 1jlj_A 1 MATEGMILTNH----------------------DHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLL-----GGTI 53 (189)
T ss_dssp ----------------------------------CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTT-----CCEE
T ss_pred CCcCCcccccc----------------------cCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcC-----CcEE
Confidence 46778899988 9999999999999999999999999999999998 7 9999
Q ss_pred EEeccccCChhhHHHHHhhhcCCccceEEEeecCCCCCCCCCChHHHHHhhhhcCCCeeeeeecccccccchhhhccccc
Q 005887 513 VATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPGLLYVMMQESLKVTPFAMLSRSAA 592 (671)
Q Consensus 513 ~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~D~T~eal~~~~~~~l~gi~e~~~~~~~~~~pg~~lsr~~~ 592 (671)
..+.+|+||++.|+++|+++++..++|+||||||+|+|++|+|+||+++++++++||+.+.++++++.++||++++|+.+
T Consensus 54 ~~~~iv~Dd~~~I~~al~~a~~~~~~DlVIttGGtg~g~~D~t~eal~~~~~~~lpg~~~~~~~~~~~~~Pg~~lsr~~~ 133 (189)
T 1jlj_A 54 SAYKIVPDEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSLNVTPLGMLSRPVC 133 (189)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHHHHHCSEECHHHHHHHHHHHHHHCGGGGGCCCCE
T ss_pred EEEEEeCCCHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCcccHHHHHHHHhccccccchhhheecccccCCCCccccceE
Confidence 99999999999999999999842379999999999999999999999999999999999889999999999999999999
Q ss_pred ccccceEEEeCCCChhhHHHHHHHHHHHHHHHHHhhcCcc
Q 005887 593 GIRGSTLIINMPGNPNAVAECMEALLPALKHALKQIKGDK 632 (671)
Q Consensus 593 G~~~~~~i~~LPG~P~a~~~~~~~ilp~L~~~~~~l~g~~ 632 (671)
|+.++++||+|||+|.++..+|+.++|+|.++++++++.+
T Consensus 134 G~~~~~~v~~LPG~P~s~~~~~~~v~P~L~~~~~~~~~~~ 173 (189)
T 1jlj_A 134 GIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAI 173 (189)
T ss_dssp EEETTEEEEEECSSHHHHHHHHHHHGGGHHHHHHHHTTCC
T ss_pred EEECCeEEEECCCCHHHHHHHHHHHHHHHHHHHhhhccCc
Confidence 9999999999999999999999977899999999998865
No 6
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=99.97 E-value=1.1e-33 Score=272.04 Aligned_cols=157 Identities=36% Similarity=0.587 Sum_probs=143.3
Q ss_pred ceEEEEEEEEeecccccCCCCCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCC
Q 005887 469 YTEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTG 548 (671)
Q Consensus 469 ~~~~~v~IIt~GdEl~~G~~~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG 548 (671)
+++++|+||+||||++.|+++|+|+++|+++|+++ |+++..+.+|+|| +.|+++|+++++ .++|+||||||+|
T Consensus 5 ~~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~-----G~~v~~~~iv~Dd-~~i~~al~~a~~-~~~DlVittGG~s 77 (164)
T 3pzy_A 5 MTTRSARVIIASTRASSGEYEDRCGPIITEWLAQQ-----GFSSAQPEVVADG-SPVGEALRKAID-DDVDVILTSGGTG 77 (164)
T ss_dssp --CCEEEEEEECHHHHC----CCHHHHHHHHHHHT-----TCEECCCEEECSS-HHHHHHHHHHHH-TTCSEEEEESCCS
T ss_pred CCCCEEEEEEECCCCCCCceeeHHHHHHHHHHHHC-----CCEEEEEEEeCCH-HHHHHHHHHHHh-CCCCEEEECCCCC
Confidence 67899999999999999999999999999999999 9999999999999 999999999983 3799999999999
Q ss_pred CCCCCCChHHHHHhhhhcCCCeeeeeecccccccchhhhcccccccccceEEEeCCCChhhHHHHHHHHHHHHHHHHHhh
Q 005887 549 FTPRDVTPEATKELIERETPGLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALKQI 628 (671)
Q Consensus 549 ~~~~D~T~eal~~~~~~~l~gi~e~~~~~~~~~~pg~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~ilp~L~~~~~~l 628 (671)
+|++|+|+||+++++++++||+++.|+.++++..|+++++|+.+|+.++++||+|||||.+++.+|+.++|.|+|+++++
T Consensus 78 ~g~~D~t~eal~~~~~~~lpG~~~~~~~~~~~~~p~a~lsr~~~G~~~~~~v~~LPG~P~aa~~~~~~v~P~l~~~~~~~ 157 (164)
T 3pzy_A 78 IAPTDSTPDQTVAVVDYLIPGLAEAIRRSGLPKVPTSVLSRGVCGVAGQTLIVNLPGSPGGVRDGLGVLAGVLDHALDQL 157 (164)
T ss_dssp SSTTCCHHHHHHTTCSEECHHHHHHHHHTTTTTCGGGGGCCCCEEEETTEEEEEECSSHHHHHHHHHHHHTTHHHHHHHH
T ss_pred CCCCccHHHHHHHHhcccCccHHHHHHhhccCCCCccccchhhhcccCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888888889999999999999999999999999999999996689999999999
Q ss_pred cCcc
Q 005887 629 KGDK 632 (671)
Q Consensus 629 ~g~~ 632 (671)
+|..
T Consensus 158 ~g~~ 161 (164)
T 3pzy_A 158 AGKD 161 (164)
T ss_dssp TTC-
T ss_pred hcCC
Confidence 9863
No 7
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=99.97 E-value=5e-33 Score=267.84 Aligned_cols=159 Identities=48% Similarity=0.742 Sum_probs=150.1
Q ss_pred EEEEEEEEeecccccCCCCCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCCC
Q 005887 471 EFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFT 550 (671)
Q Consensus 471 ~~~v~IIt~GdEl~~G~~~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~ 550 (671)
+++|+||+||||+..|+++|+|+++|+++|+++ |+++..+.+|+||++.|+++|+++++..++|+||||||+|+|
T Consensus 1 ~~~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~-----G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g 75 (164)
T 2is8_A 1 MFRVGILTVSDKGFRGERQDTTHLAIREVLAGG-----PFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTGLA 75 (164)
T ss_dssp CEEEEEEEECHHHHHTSSCCCHHHHHHHHHTTS-----SEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSS
T ss_pred CcEEEEEEEcCcccCCCcccchHHHHHHHHHHC-----CCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCC
Confidence 379999999999999999999999999999999 999999999999999999999999841279999999999999
Q ss_pred CCCCChHHHHHhhhhcCCCeeeeeecccccccchhhhcccccccccceEEEeCCCChhhHHHHHHHHHHHHHHHHHhhcC
Q 005887 551 PRDVTPEATKELIERETPGLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALKQIKG 630 (671)
Q Consensus 551 ~~D~T~eal~~~~~~~l~gi~e~~~~~~~~~~pg~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~ilp~L~~~~~~l~g 630 (671)
++|+|+||++++++++++|+.+.+++++++++|+++++++.+|+.++++||+|||+|.+++.+|+.++|+|.++++++++
T Consensus 76 ~~D~t~ea~~~~~~~~l~g~~~~~~~~~~~~~p~~~l~~g~~G~~~~~~v~~LPG~P~~~~~~~~~v~p~l~~~~~~~~~ 155 (164)
T 2is8_A 76 PRDRTPEATRELLDREVPGLAELMRLVGLRKTPMAALSRGVAGVRGRTLILNLPGSPKGARESLEAVLPVLPHALSLVTG 155 (164)
T ss_dssp TTCCHHHHHHTTCSEECHHHHHHHTTTTCSSCCGGGGCCCCEEEETTEEEEEECSSHHHHHHHHHHHGGGHHHHHHHHHC
T ss_pred CCCChHHHHHHHhCCCCccHHHHHHHcCcCcCCceeeeeeeEEEECCeEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999998999999999999999999999999999999999999999999988999999999998
Q ss_pred cccc
Q 005887 631 DKRE 634 (671)
Q Consensus 631 ~~~~ 634 (671)
...+
T Consensus 156 ~~~~ 159 (164)
T 2is8_A 156 KPWK 159 (164)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7544
No 8
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=99.97 E-value=8.1e-33 Score=267.18 Aligned_cols=165 Identities=86% Similarity=1.273 Sum_probs=150.7
Q ss_pred CceEEEEEEEEeecccccCCCCCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCC
Q 005887 468 GYTEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGT 547 (671)
Q Consensus 468 ~~~~~~v~IIt~GdEl~~G~~~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGt 547 (671)
++++++|+||+||||+..|++.|+|+++++++|++++++++|+++..+.+|+||++.|+++|+++++..++|+||||||+
T Consensus 2 ~~~~~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~ 81 (167)
T 1uuy_A 2 PGPEYKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLGGT 81 (167)
T ss_dssp -CCSEEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred CCCCcEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 37889999999999999999999999999999987765554799999999999999999999998742379999999999
Q ss_pred CCCCCCCChHHHHHhhhhcCCCeeeeeecccccccchhhhcccccccccceEEEeCCCChhhHHHHHHHHHHHHHHHHHh
Q 005887 548 GFTPRDVTPEATKELIERETPGLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALKQ 627 (671)
Q Consensus 548 G~~~~D~T~eal~~~~~~~l~gi~e~~~~~~~~~~pg~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~ilp~L~~~~~~ 627 (671)
|+|++|+|+||+++++++++||+.+.+++++++++|+++++|.++|+.++++||+|||+|.+++.+|+.++|+|++++++
T Consensus 82 g~g~~D~t~~a~~~~~~~~l~g~~~~~~~~g~~~~Pg~~~sr~~~G~~~~~~v~~LPG~P~s~~~~~~~~~P~L~~~~~~ 161 (167)
T 1uuy_A 82 GFTPRDVTPEATKKVIERETPGLLFVMMQESLKITPFAMLARSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALKQ 161 (167)
T ss_dssp SSSTTCCHHHHHHHHCSEECHHHHHHHHHHHHHHCGGGGGCCCCEEEETTEEEEEECSSTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHhcCCCCcHHHHHHhcccccCCCCcccceeEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998877899999999999999999999999999999999999999999989999999999
Q ss_pred hcCcc
Q 005887 628 IKGDK 632 (671)
Q Consensus 628 l~g~~ 632 (671)
++|..
T Consensus 162 ~~g~~ 166 (167)
T 1uuy_A 162 IKGDK 166 (167)
T ss_dssp HC---
T ss_pred HhCCC
Confidence 98753
No 9
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=99.97 E-value=5.4e-33 Score=271.26 Aligned_cols=158 Identities=34% Similarity=0.483 Sum_probs=141.2
Q ss_pred CCceEEEEEEEEeecccccCCCCCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecC
Q 005887 467 SGYTEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGG 546 (671)
Q Consensus 467 ~~~~~~~v~IIt~GdEl~~G~~~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGG 546 (671)
.++++++|+||+||||++.|+ +|+|+++|+++|+++ |+++..+.+|+||++.|+++|+++++ .++|+||||||
T Consensus 26 ~~~~~~rvaIistGdEl~~G~-~Dsn~~~L~~~L~~~-----G~~v~~~~iv~Dd~~~I~~al~~a~~-~~~DlVIttGG 98 (185)
T 3rfq_A 26 AELVVGRALVVVVDDRTAHGD-EDHSGPLVTELLTEA-----GFVVDGVVAVEADEVDIRNALNTAVI-GGVDLVVSVGG 98 (185)
T ss_dssp ---CCEEEEEEEECHHHHTTC-CCSHHHHHHHHHHHT-----TEEEEEEEEECSCHHHHHHHHHHHHH-TTCSEEEEESC
T ss_pred cCCCCCEEEEEEECcccCCCC-cCcHHHHHHHHHHHC-----CCEEEEEEEeCCCHHHHHHHHHHHHh-CCCCEEEECCC
Confidence 448999999999999999999 999999999999999 99999999999999999999999873 47999999999
Q ss_pred CCCCCCCCChHHHHHhhhhcCCCeeeeeecccccc-cchhhhcccccccccceEEEeCCCChhhHHHHHHHHHHHHHHHH
Q 005887 547 TGFTPRDVTPEATKELIERETPGLLYVMMQESLKV-TPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHAL 625 (671)
Q Consensus 547 tG~~~~D~T~eal~~~~~~~l~gi~e~~~~~~~~~-~pg~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~ilp~L~~~~ 625 (671)
+|+|++|+|+||+++++++++||+++.|+..+++. +|.++++|+.+|+.++++||+|||||.+++.+|+.++|.|.|++
T Consensus 99 ts~g~~D~t~eal~~l~~~~l~G~~~~f~~v~~kpG~p~a~lsR~~~G~~~~~~V~~LPGnP~aa~~~~~~l~P~L~~~~ 178 (185)
T 3rfq_A 99 TGVTPRDVTPESTREILDREILGIAEAIRASGLSAGIIDAGLSRGLAGVSGSTLVVNLAGSRYAVRDGMATLNPLAAHII 178 (185)
T ss_dssp CSSSTTCCHHHHHHTTCSEECHHHHHHHHHHHHHTTCHHHHTCCCCEEEETTEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccHHHHHHHHhcccCccHHHHHHHHhcCCCCCceeeeehhhcccCCeEEEECCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988655444333 44567789999999999999999999999999998899999999
Q ss_pred HhhcCc
Q 005887 626 KQIKGD 631 (671)
Q Consensus 626 ~~l~g~ 631 (671)
++++|+
T Consensus 179 ~~l~g~ 184 (185)
T 3rfq_A 179 GQLSSL 184 (185)
T ss_dssp HHHC--
T ss_pred HHHhcc
Confidence 999875
No 10
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=99.97 E-value=1.3e-33 Score=277.55 Aligned_cols=153 Identities=22% Similarity=0.348 Sum_probs=130.4
Q ss_pred hhhcceeEEEEeecceEEEeecCCcccccccccccccccccchhHHHHHHHHH---hccceeeeecccCCHHHHHHHhhh
Q 005887 177 LATAGIMMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQ---QHCKLIDLGIVRDDEEELEKTLDN 253 (671)
Q Consensus 177 Las~Gi~~v~V~~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~---~G~~v~~~~iv~Dd~~~i~~~l~~ 253 (671)
+|++|+.+|.||++|||+||+|||||+ .|+++|+|+++|+++|++ +|+++..+.+++||++.|+++|++
T Consensus 1 ~a~~g~~~v~v~~~~rv~IistGdEl~--------~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~ 72 (189)
T 1jlj_A 1 MATEGMILTNHDHQIRVGVLTVSDSCF--------RNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLID 72 (189)
T ss_dssp ------------CCCEEEEEEECHHHH--------TTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHH
T ss_pred CCcCCcccccccCCCEEEEEEECCccC--------CCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHH
Confidence 589999999999999999999999997 488999999999999998 899999999999999999999999
Q ss_pred hhc-ccccEEEecCCcccCCccchhhhhcccc---------eEEEecccccCCCcc---eeeEeccccCchhhhhhhhhc
Q 005887 254 AFS-AGIDILLTSGGVSMGDKDFVKPLLQKKG---------TIYFNKVCMKPGKPL---TFAEINIKPTDDVMVNKILAF 320 (671)
Q Consensus 254 a~~-~~~DiVIttGG~s~G~~D~~~~~l~~~g---------~i~f~~v~~~PGkp~---~~a~~~~~~~~~~~~~~~~v~ 320 (671)
+++ +++|+||||||+|+|++|+|++++++++ .+.|++++|+||+|+ .+|..+ +++||
T Consensus 73 a~~~~~~DlVIttGGtg~g~~D~t~eal~~~~~~~lpg~~~~~~~~~~~~~Pg~~lsr~~~G~~~----------~~~v~ 142 (189)
T 1jlj_A 73 WCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSLNVTPLGMLSRPVCGIRG----------KTLII 142 (189)
T ss_dssp HHHTSCCSEEEEESCCSSSTTCCHHHHHHHHCSEECHHHHHHHHHHHHHHCGGGGGCCCCEEEET----------TEEEE
T ss_pred HhhcCCCCEEEEcCCCCCCCcccHHHHHHHHhccccccchhhheecccccCCCCccccceEEEEC----------CeEEE
Confidence 986 2499999999999999999999999975 477899999999998 778775 58999
Q ss_pred cCCCCceeEEEEEeEeeechhhcccCCC
Q 005887 321 GLPGNPVSCIVCFHLYIVPAIRHLSGWA 348 (671)
Q Consensus 321 ~LPGnP~aa~~~~~~~v~P~L~~l~G~~ 348 (671)
+|||||.++..+|+ ++.|+|+++++..
T Consensus 143 ~LPG~P~s~~~~~~-~v~P~L~~~~~~~ 169 (189)
T 1jlj_A 143 NLPGSKKGSQECFQ-FILPALPHAIDLL 169 (189)
T ss_dssp EECSSHHHHHHHHH-HHGGGHHHHHHHH
T ss_pred ECCCCHHHHHHHHH-HHHHHHHHHHhhh
Confidence 99999999999999 9999999998753
No 11
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=99.97 E-value=1.8e-33 Score=274.59 Aligned_cols=154 Identities=15% Similarity=0.186 Sum_probs=126.4
Q ss_pred chhhhhhhcceeEEEEeecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHh
Q 005887 172 SEIGLLATAGIMMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTL 251 (671)
Q Consensus 172 ~~i~lLas~Gi~~v~V~~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l 251 (671)
.++|+|++.+.++ +++++|||+||+||||++ .|+ +|+|+++|.++|+++|+++..+.+++||++.|+++|
T Consensus 13 ~~~g~~~~~~~~~-~~~~~~rvaIistGdEl~--------~G~-~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al 82 (185)
T 3rfq_A 13 SDLGYSVAPMEQG-AELVVGRALVVVVDDRTA--------HGD-EDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNAL 82 (185)
T ss_dssp -----------------CCEEEEEEEECHHHH--------TTC-CCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHH
T ss_pred hhhhhhhcccccc-cCCCCCEEEEEEECcccC--------CCC-cCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHH
Confidence 5789999999999 999999999999999998 589 999999999999999999999999999999999999
Q ss_pred hhhhcccccEEEecCCcccCCccchhhhhcccc-------eEEEecccccCCCcce------eeEeccccCchhhhhhhh
Q 005887 252 DNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKG-------TIYFNKVCMKPGKPLT------FAEINIKPTDDVMVNKIL 318 (671)
Q Consensus 252 ~~a~~~~~DiVIttGG~s~G~~D~~~~~l~~~g-------~i~f~~v~~~PGkp~~------~a~~~~~~~~~~~~~~~~ 318 (671)
++++++++|+||||||+|+|++|+|++++++++ +.+||+++|+||+|+. +|..+ +++
T Consensus 83 ~~a~~~~~DlVIttGGts~g~~D~t~eal~~l~~~~l~G~~~~f~~v~~kpG~p~a~lsR~~~G~~~----------~~~ 152 (185)
T 3rfq_A 83 NTAVIGGVDLVVSVGGTGVTPRDVTPESTREILDREILGIAEAIRASGLSAGIIDAGLSRGLAGVSG----------STL 152 (185)
T ss_dssp HHHHHTTCSEEEEESCCSSSTTCCHHHHHHTTCSEECHHHHHHHHHHHHHTTCHHHHTCCCCEEEET----------TEE
T ss_pred HHHHhCCCCEEEECCCCCCCCcccHHHHHHHHhcccCccHHHHHHHHhcCCCCCceeeeehhhcccC----------CeE
Confidence 998733599999999999999999999999974 4579999999999983 67664 589
Q ss_pred hccCCCCceeEEEEEeEeeechhhcccC
Q 005887 319 AFGLPGNPVSCIVCFHLYIVPAIRHLSG 346 (671)
Q Consensus 319 v~~LPGnP~aa~~~~~~~v~P~L~~l~G 346 (671)
||+|||||.|++++|+. +.|+|+++..
T Consensus 153 V~~LPGnP~aa~~~~~~-l~P~L~~~~~ 179 (185)
T 3rfq_A 153 VVNLAGSRYAVRDGMAT-LNPLAAHIIG 179 (185)
T ss_dssp EEEECSSHHHHHHHHHH-HHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHH-HHHHHHHHHH
Confidence 99999999999999986 5999988764
No 12
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=99.97 E-value=3.2e-33 Score=272.29 Aligned_cols=149 Identities=20% Similarity=0.345 Sum_probs=133.0
Q ss_pred EEEEeecceEEEeecCCcccccccccccc-cccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcc-cccE
Q 005887 184 MVKVYRTPTIAVLSTGDELVEPTTQCLDR-GQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSA-GIDI 261 (671)
Q Consensus 184 ~v~V~~~prV~iistGdElv~~~~~~~~~-G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~-~~Di 261 (671)
+-.+|++|||+||+||||++ ++ +.. |+|+|+|+++|+++|+++|+++..+.+++||++.|+++|++++++ ++|+
T Consensus 9 ~~~~~~~~rv~IittGde~~---~~-~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~Dl 84 (178)
T 2pjk_A 9 KENAPKSLNFYVITISTSRY---EK-LLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDV 84 (178)
T ss_dssp ----CCCCEEEEEEECHHHH---HH-HHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCE
T ss_pred HhcCCCCCEEEEEEeCcccc---cc-cccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCE
Confidence 34689999999999999998 22 456 999999999999999999999999999999999999999999863 3999
Q ss_pred EEecCCcccCCccchhhhhccc------c-eEEEecccccC---CCc-----ceeeEeccccCchhhhhhhhhccCCCCc
Q 005887 262 LLTSGGVSMGDKDFVKPLLQKK------G-TIYFNKVCMKP---GKP-----LTFAEINIKPTDDVMVNKILAFGLPGNP 326 (671)
Q Consensus 262 VIttGG~s~G~~D~~~~~l~~~------g-~i~f~~v~~~P---Gkp-----~~~a~~~~~~~~~~~~~~~~v~~LPGnP 326 (671)
||||||+|+|++|+|+++++++ | ..+||+++|+| |+| +.+|.++ +++||+|||||
T Consensus 85 VittGG~s~g~~D~t~eal~~~~~~~l~G~~~~~~~v~~~p~~~G~pa~lsr~~~G~~~----------~~~v~~LPG~P 154 (178)
T 2pjk_A 85 IISTGGTGYSPTDITVETIRKLFDREIEGFSDVFRLVSFNDPEVKAAAYLTKASAGIIG----------KKIVYLLPGSP 154 (178)
T ss_dssp EEEESCCSSSTTCCHHHHHGGGCSEECHHHHHHHHHHHHTSTTTGGGGGGCCCEEEEET----------TEEEEEECSCH
T ss_pred EEECCCCCCCCCcchHHHHHHHhcccCcchHHHhheeeccCCCCCCcchhheeEEEEEC----------CEEEEECCCCc
Confidence 9999999999999999999997 3 34799999999 999 6777775 58999999999
Q ss_pred eeEEEEEeEeeechhhcccC
Q 005887 327 VSCIVCFHLYIVPAIRHLSG 346 (671)
Q Consensus 327 ~aa~~~~~~~v~P~L~~l~G 346 (671)
.|++++|++|+.|+|+++++
T Consensus 155 ~aa~~~~~~~v~P~l~~~~~ 174 (178)
T 2pjk_A 155 DAVKLALKELILPEVGHLVY 174 (178)
T ss_dssp HHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998865
No 13
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=99.97 E-value=4e-32 Score=267.83 Aligned_cols=164 Identities=32% Similarity=0.514 Sum_probs=145.2
Q ss_pred eEEEEEEEEeecccccCCCCCCCCCceEEEecCCccccCCce--EEEeccccCChhhHHHHHhhhcCCccceEEEeecCC
Q 005887 470 TEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAK--VVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGT 547 (671)
Q Consensus 470 ~~~~v~IIt~GdEl~~G~~~D~n~~~l~~~L~~~~~~~~G~~--v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGt 547 (671)
++++++||+||||++.|+++|+|+++|+++|+++ |++ +..+.+|+||++.|+++|+++++..++|+||||||+
T Consensus 2 ~~~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~-----G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGGt 76 (195)
T 1di6_A 2 ATLRIGLVSISDRASSGVYQDKGIPALEEWLTSA-----LTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGT 76 (195)
T ss_dssp CCEEEEEEEEECC-------CCHHHHHHHHHHHH-----BCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred CCCEEEEEEECCCCCCCeEEchHHHHHHHHHHHc-----CCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 3689999999999999999999999999999999 998 788999999999999999999852369999999999
Q ss_pred CCCCCCCChHHHHHhhhhcCCCeeeeeecccccccchhhhcccccccccceEEEeCCCChhhHHHHHHHH----------
Q 005887 548 GFTPRDVTPEATKELIERETPGLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEAL---------- 617 (671)
Q Consensus 548 G~~~~D~T~eal~~~~~~~l~gi~e~~~~~~~~~~pg~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~i---------- 617 (671)
|+|++|+|+||+++++++++||+++.|+..+++..|.++++|+.+|+.++++||+|||+|.+++.+|+.|
T Consensus 77 g~g~~D~T~ea~~~~~~~~l~g~~~~~~~~~~~~~p~a~lsr~~aG~~~~~~v~~LPG~P~a~~~~~~~~~~~~~~~~~~ 156 (195)
T 1di6_A 77 GPARRDVTPDATLAVADREMPGFGEQMRQISLHFVPTAILSRQVGVIRKQALILNLPGQPKSIKETLEGVKDAEGNVVVH 156 (195)
T ss_dssp SSSTTCCHHHHHHHTCSEECHHHHHHHHHHHHTTCGGGGGCCCCEEEETTEEEEEECSSHHHHHHHHHEEECTTSCEEEE
T ss_pred CCCCCccHHHHHHHHhcccCccHHHHHHHhcCCCCCcceeccceEEEECCEEEEECCCCHHHHHHHHHHHHhhcccchhh
Confidence 9999999999999999999999999988888888898899999899999999999999999999999995
Q ss_pred --HHHHHHHHHhhcCcccccCCC
Q 005887 618 --LPALKHALKQIKGDKREKHPR 638 (671)
Q Consensus 618 --lp~L~~~~~~l~g~~~~~~~~ 638 (671)
+|.|+|+++++.|.+.++++.
T Consensus 157 ~v~p~l~~~~~~l~g~~~~~~~~ 179 (195)
T 1di6_A 157 GIFASVPYCIQLLEGPYVETAPE 179 (195)
T ss_dssp CGGGGHHHHHHHTTCCCCCBCTT
T ss_pred hHHHHHHHHHHHhcCCCcCCCcc
Confidence 799999999999987666554
No 14
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=99.97 E-value=6.3e-32 Score=260.90 Aligned_cols=155 Identities=24% Similarity=0.428 Sum_probs=135.9
Q ss_pred eEEEEEEEEeecccccCCCCCCCCCceEEE----ecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeec
Q 005887 470 TEFSVAILTVSDTVASGAGPDRSGPRAVSV----VNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLG 545 (671)
Q Consensus 470 ~~~~v~IIt~GdEl~~G~~~D~n~~~l~~~----L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttG 545 (671)
..++++||+||||+..|+++|+|+++|+++ |+++ |+++.++.+|+||++.|+++|+++++ .++|+|||||
T Consensus 4 m~~~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~-----G~~v~~~~iv~Dd~~~I~~~l~~a~~-~~~DlVittG 77 (167)
T 2g2c_A 4 MHIKSAIIVVSDRISTGTRENKALPLLQRLMSDELQDY-----SYELISEVVVPEGYDTVVEAIATALK-QGARFIITAG 77 (167)
T ss_dssp CEEEEEEEEECHHHHHTSSCCCHHHHHHHHHCC----C-----EEEEEEEEEECSSHHHHHHHHHHHHH-TTCSEEEEES
T ss_pred CccEEEEEEECCcccCCceeccHHHHHHHhHHhHHHHC-----CCEEeEEEEeCCCHHHHHHHHHHHHh-CCCCEEEECC
Confidence 568999999999999999999999999999 9999 99999999999999999999999984 2599999999
Q ss_pred CCCCCCCCCChHHHHHhhhhcCCCeeeeeecccccccchhhhcccccccccc----eEEEeCCCChhhHHHHHHHHHHHH
Q 005887 546 GTGFTPRDVTPEATKELIERETPGLLYVMMQESLKVTPFAMLSRSAAGIRGS----TLIINMPGNPNAVAECMEALLPAL 621 (671)
Q Consensus 546 GtG~~~~D~T~eal~~~~~~~l~gi~e~~~~~~~~~~pg~~lsr~~~G~~~~----~~i~~LPG~P~a~~~~~~~ilp~L 621 (671)
|+|+|++|+|+||++++++++++|+.+.|+..+++..|.++++|+.+|+.++ ++||+|||+|.+++.+|+.++|+|
T Consensus 78 G~g~~~~D~t~ea~~~~~~~~l~g~~~~~~~~~~~~~p~a~l~r~~aG~~~~~~~~~~v~~LPG~P~~~~~~~~~v~P~L 157 (167)
T 2g2c_A 78 GTGIRAKNQTPEATASFIHTRCEGLEQQILIHGSTHTHLAGLSRGIVGVTGRDDHAALIVNAPSSSGGITDTWAVISPVI 157 (167)
T ss_dssp CCSSSTTCCHHHHHHTTCSEECHHHHHHHHHHC-------CCCCCCEEESCSSTTCCEEEEECSSHHHHHHHHHHHGGGH
T ss_pred CCCCCCCcChHHHHHHHhCCcCccHHHHHHHhcCCcCCceeeeccccceecCCCCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888777777767888889998899888 999999999999999999668999
Q ss_pred HHHHHhhcC
Q 005887 622 KHALKQIKG 630 (671)
Q Consensus 622 ~~~~~~l~g 630 (671)
+|++++++|
T Consensus 158 ~~~~~~~~~ 166 (167)
T 2g2c_A 158 PNIFEGLDA 166 (167)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHcC
Confidence 999999876
No 15
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=99.97 E-value=7.7e-32 Score=262.59 Aligned_cols=158 Identities=28% Similarity=0.484 Sum_probs=143.3
Q ss_pred CCCceEEEEEEEEeecccc----c-CCCCCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceE
Q 005887 466 CSGYTEFSVAILTVSDTVA----S-GAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDL 540 (671)
Q Consensus 466 ~~~~~~~~v~IIt~GdEl~----~-G~~~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~Dl 540 (671)
.+++++++|+||+||||+. . |+++|+|+++|+++|+++ |+++..+.+++||++.|+++|+++++..++|+
T Consensus 10 ~~~~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~-----G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~Dl 84 (178)
T 2pjk_A 10 ENAPKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIEN-----GHKIIGYSLVPDDKIKILKAFTDALSIDEVDV 84 (178)
T ss_dssp ---CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHT-----TCEEEEEEEECSCHHHHHHHHHHHHTCTTCCE
T ss_pred hcCCCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHC-----CCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCE
Confidence 4569999999999999987 7 999999999999999999 99999999999999999999999985224999
Q ss_pred EEeecCCCCCCCCCChHHHHHhhhhcCCCeeeeeecccccccc---hh--hhcccccccccceEEEeCCCChhhHHHHHH
Q 005887 541 ILTLGGTGFTPRDVTPEATKELIERETPGLLYVMMQESLKVTP---FA--MLSRSAAGIRGSTLIINMPGNPNAVAECME 615 (671)
Q Consensus 541 VIttGGtG~~~~D~T~eal~~~~~~~l~gi~e~~~~~~~~~~p---g~--~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~ 615 (671)
||||||+|+|++|+|+||+++++++++||+.+. |+++.++| |+ +++|..+|+.++++||+|||||.+++.+|+
T Consensus 85 VittGG~s~g~~D~t~eal~~~~~~~l~G~~~~--~~~v~~~p~~~G~pa~lsr~~~G~~~~~~v~~LPG~P~aa~~~~~ 162 (178)
T 2pjk_A 85 IISTGGTGYSPTDITVETIRKLFDREIEGFSDV--FRLVSFNDPEVKAAAYLTKASAGIIGKKIVYLLPGSPDAVKLALK 162 (178)
T ss_dssp EEEESCCSSSTTCCHHHHHGGGCSEECHHHHHH--HHHHHHTSTTTGGGGGGCCCEEEEETTEEEEEECSCHHHHHHHHH
T ss_pred EEECCCCCCCCCcchHHHHHHHhcccCcchHHH--hheeeccCCCCCCcchhheeEEEEECCEEEEECCCCcHHHHHHHH
Confidence 999999999999999999999999999999874 67888888 74 578889999999999999999999999999
Q ss_pred H-HHHHHHHHHHhhcC
Q 005887 616 A-LLPALKHALKQIKG 630 (671)
Q Consensus 616 ~-ilp~L~~~~~~l~g 630 (671)
. ++|.|.|+++++++
T Consensus 163 ~~v~P~l~~~~~~~~~ 178 (178)
T 2pjk_A 163 ELILPEVGHLVYLVRS 178 (178)
T ss_dssp HTHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhC
Confidence 5 58999999998864
No 16
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=99.96 E-value=1.9e-31 Score=258.05 Aligned_cols=145 Identities=17% Similarity=0.311 Sum_probs=127.5
Q ss_pred eEEEEeecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhc-ccccE
Q 005887 183 MMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFS-AGIDI 261 (671)
Q Consensus 183 ~~v~V~~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~-~~~Di 261 (671)
++++||++|||+||+||||| |+++|+|+++|+++|+++|+++..+.+++||++.|+++|+++++ +++|+
T Consensus 6 ~~~~v~~~~rv~Ii~tGdEl----------g~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~Dl 75 (169)
T 1y5e_A 6 HKKQAPKEVRCKIVTISDTR----------TEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDV 75 (169)
T ss_dssp ------CCCEEEEEEECSSC----------CTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSE
T ss_pred cccccccCCEEEEEEEcCcc----------CeeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCE
Confidence 45689999999999999997 48999999999999999999999999999999999999999986 24999
Q ss_pred EEecCCcccCCccchhhhhcccc-------eEEEecccc--cCCCcceee-----EeccccCchhhhhhhhhccCCCCce
Q 005887 262 LLTSGGVSMGDKDFVKPLLQKKG-------TIYFNKVCM--KPGKPLTFA-----EINIKPTDDVMVNKILAFGLPGNPV 327 (671)
Q Consensus 262 VIttGG~s~G~~D~~~~~l~~~g-------~i~f~~v~~--~PGkp~~~a-----~~~~~~~~~~~~~~~~v~~LPGnP~ 327 (671)
||||||+|+|++|+|++++++++ +.+||+++| +||+|++++ ..+ +++||+|||||.
T Consensus 76 VittGG~g~g~~D~t~ea~~~~~~~~l~g~~~~~~~~~~~~~pG~~~~~~r~~aG~~~----------~~~v~~LPG~P~ 145 (169)
T 1y5e_A 76 VLTNGGTGITKRDVTIEAVSALLDKEIVGFGELFRMISYLEDIGSSAMLSRAIGGTIG----------RKVVFSMPGSSG 145 (169)
T ss_dssp EEEECCCSSSTTCCHHHHHHTTCSEECHHHHHHHHHHHHHHSSGGGGGGCCCEEEEET----------TEEEEEECSSHH
T ss_pred EEEcCCCCCCCCCCcHHHHHHHcCCCCCChHHHHhhhhcccCCCcceecccceeEEEC----------CEEEEECCCCHH
Confidence 99999999999999999999873 347899999 999998873 333 589999999999
Q ss_pred eEEEEEeEeeechhhcccCC
Q 005887 328 SCIVCFHLYIVPAIRHLSGW 347 (671)
Q Consensus 328 aa~~~~~~~v~P~L~~l~G~ 347 (671)
++..+|+.++.|+|++++|.
T Consensus 146 ~~~~~~~~~v~p~L~~~~~~ 165 (169)
T 1y5e_A 146 AVRLAMNKLILPELGHITFE 165 (169)
T ss_dssp HHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998874
No 17
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=99.96 E-value=3e-31 Score=255.03 Aligned_cols=139 Identities=17% Similarity=0.215 Sum_probs=119.7
Q ss_pred eecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCC
Q 005887 188 YRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 267 (671)
Q Consensus 188 ~~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG 267 (671)
+++|||+||+||||++ .|+|+|+|+++|+++|+++|+++..+.+++|| +.|+++|++++++++|+||||||
T Consensus 5 ~~~~rv~ii~tGdEl~--------~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG 75 (164)
T 3pzy_A 5 MTTRSARVIIASTRAS--------SGEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGG 75 (164)
T ss_dssp --CCEEEEEEECHHHH--------C----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESC
T ss_pred CCCCEEEEEEECCCCC--------CCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCC
Confidence 5789999999999997 69999999999999999999999999999999 99999999998535999999999
Q ss_pred cccCCccchhhhhccc------c-eEEEecccccCCCcc-----eeeEeccccCchhhhhhhhhccCCCCceeEEEEEeE
Q 005887 268 VSMGDKDFVKPLLQKK------G-TIYFNKVCMKPGKPL-----TFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHL 335 (671)
Q Consensus 268 ~s~G~~D~~~~~l~~~------g-~i~f~~v~~~PGkp~-----~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~ 335 (671)
+|+|++|+|+++++++ | ..+||++.++||++. .+|..+ +++||+|||||.|++++|+
T Consensus 76 ~s~g~~D~t~eal~~~~~~~lpG~~~~~~~~~~~~~p~a~lsr~~~G~~~----------~~~v~~LPG~P~aa~~~~~- 144 (164)
T 3pzy_A 76 TGIAPTDSTPDQTVAVVDYLIPGLAEAIRRSGLPKVPTSVLSRGVCGVAG----------QTLIVNLPGSPGGVRDGLG- 144 (164)
T ss_dssp CSSSTTCCHHHHHHTTCSEECHHHHHHHHHTTTTTCGGGGGCCCCEEEET----------TEEEEEECSSHHHHHHHHH-
T ss_pred CCCCCCccHHHHHHHHhcccCccHHHHHHhhccCCCCccccchhhhcccC----------CEEEEECCCCHHHHHHHHH-
Confidence 9999999999999997 3 346899999998553 345554 5899999999999999999
Q ss_pred eeechhhcccC
Q 005887 336 YIVPAIRHLSG 346 (671)
Q Consensus 336 ~v~P~L~~l~G 346 (671)
|+.|+|+++..
T Consensus 145 ~v~P~l~~~~~ 155 (164)
T 3pzy_A 145 VLAGVLDHALD 155 (164)
T ss_dssp HHHTTHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 18
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=99.96 E-value=3.4e-30 Score=251.23 Aligned_cols=157 Identities=39% Similarity=0.624 Sum_probs=138.8
Q ss_pred eEEEEEEEEeecccccCCCCCCCCCceEEEec---CCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecC
Q 005887 470 TEFSVAILTVSDTVASGAGPDRSGPRAVSVVN---SSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGG 546 (671)
Q Consensus 470 ~~~~v~IIt~GdEl~~G~~~D~n~~~l~~~L~---~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGG 546 (671)
++++|+||+||||+..|+++|+|+++|+++|+ ++ |+++ .+.+|+||++.|+++|+++++..++|+||||||
T Consensus 4 ~~~rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~-----G~~v-~~~iv~Dd~~~I~~~l~~~~~~~~~DlVittGG 77 (178)
T 2pbq_A 4 KKAVIGVVTISDRASKGIYEDISGKAIIDYLKDVIIT-----PFEV-EYRVIPDERDLIEKTLIELADEKGCSLILTTGG 77 (178)
T ss_dssp -CCEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCS-----CCEE-EEEEECSCHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred CCCEEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhC-----CCEE-EEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 67899999999999999999999999999887 88 9999 889999999999999999984227999999999
Q ss_pred CCCCCCCCChHHHHHhhhhcCCCeeeeeecccccccchhhhcccccccccceEEEeCCCChhhHHHHHHHHHHHHHHHHH
Q 005887 547 TGFTPRDVTPEATKELIERETPGLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALK 626 (671)
Q Consensus 547 tG~~~~D~T~eal~~~~~~~l~gi~e~~~~~~~~~~pg~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~ilp~L~~~~~ 626 (671)
+|+|++|+|+||++++++++++|+.+.++....+.+|.+.++|+.+|+.++++||+|||+|.+++.+|+.++|.++++..
T Consensus 78 ~g~g~~D~t~ea~~~~~~~~l~g~~~~~~~v~~~~~p~~~lsrg~ag~~~~~~v~~LPG~P~~~~~~~~~~~~v~p~l~~ 157 (178)
T 2pbq_A 78 TGPAPRDVTPEATEAVCEKMLPGFGELMRQVSLKQVPTAILSRQTAGIRGSCLIVNLPGKPQSIKVCLDAVMPAIPYCID 157 (178)
T ss_dssp CSSSTTCCHHHHHHHHCSEECHHHHHHHHHHHHTTCGGGGGCCCCEEEETTEEEEEECSSHHHHHHHHHHHGGGHHHHHH
T ss_pred CCCCCCCchHHHHHHHhCCCCCChHHHHHHHhcccCcccccccceeeeECCEEEEECCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887665555455777778888889999999999999999999999999777777777
Q ss_pred hhcCcc
Q 005887 627 QIKGDK 632 (671)
Q Consensus 627 ~l~g~~ 632 (671)
.+.+..
T Consensus 158 ~~~~~~ 163 (178)
T 2pbq_A 158 LIGGAY 163 (178)
T ss_dssp HTTCCC
T ss_pred HhcCCC
Confidence 666553
No 19
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=99.96 E-value=2.8e-30 Score=249.84 Aligned_cols=155 Identities=30% Similarity=0.436 Sum_probs=137.5
Q ss_pred CCceEEEEEEEEeecccccCCCCCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecC
Q 005887 467 SGYTEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGG 546 (671)
Q Consensus 467 ~~~~~~~v~IIt~GdEl~~G~~~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGG 546 (671)
++|++++|+||+||||+ |+++|+|+++|+++|+++ |+++..+.+|+||++.|+++|+++++..++|+||||||
T Consensus 9 ~v~~~~rv~Ii~tGdEl--g~i~Dsn~~~l~~~L~~~-----G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG 81 (169)
T 1y5e_A 9 QAPKEVRCKIVTISDTR--TEETDKSGQLLHELLKEA-----GHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGG 81 (169)
T ss_dssp ---CCCEEEEEEECSSC--CTTTCHHHHHHHHHHHHH-----TCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECC
T ss_pred ccccCCEEEEEEEcCcc--CeeccChHHHHHHHHHHC-----CCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 45999999999999999 899999999999999999 99999999999999999999999984237999999999
Q ss_pred CCCCCCCCChHHHHHhhhhcCCCeeeeeecccccc--cchhhh--cccccccccceEEEeCCCChhhHHHHHHH-HHHHH
Q 005887 547 TGFTPRDVTPEATKELIERETPGLLYVMMQESLKV--TPFAML--SRSAAGIRGSTLIINMPGNPNAVAECMEA-LLPAL 621 (671)
Q Consensus 547 tG~~~~D~T~eal~~~~~~~l~gi~e~~~~~~~~~--~pg~~l--sr~~~G~~~~~~i~~LPG~P~a~~~~~~~-ilp~L 621 (671)
+|+|++|+|+||++++++++++|+++. ++++.+ +||++. +|+.+|+.++++||+|||+|.+++.+|+. ++|+|
T Consensus 82 ~g~g~~D~t~ea~~~~~~~~l~g~~~~--~~~~~~~~~pG~~~~~~r~~aG~~~~~~v~~LPG~P~~~~~~~~~~v~p~L 159 (169)
T 1y5e_A 82 TGITKRDVTIEAVSALLDKEIVGFGEL--FRMISYLEDIGSSAMLSRAIGGTIGRKVVFSMPGSSGAVRLAMNKLILPEL 159 (169)
T ss_dssp CSSSTTCCHHHHHHTTCSEECHHHHHH--HHHHHHHHSSGGGGGGCCCEEEEETTEEEEEECSSHHHHHHHHHHTHHHHH
T ss_pred CCCCCCCCcHHHHHHHcCCCCCChHHH--HhhhhcccCCCcceecccceeEEECCEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988774 456666 788764 45556888999999999999999999996 57999
Q ss_pred HHHHHhhcC
Q 005887 622 KHALKQIKG 630 (671)
Q Consensus 622 ~~~~~~l~g 630 (671)
+++.+++++
T Consensus 160 ~~~~~~~~~ 168 (169)
T 1y5e_A 160 GHITFELHR 168 (169)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhc
Confidence 999998876
No 20
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=99.95 E-value=5.3e-30 Score=250.01 Aligned_cols=158 Identities=29% Similarity=0.520 Sum_probs=138.9
Q ss_pred CCceEEEEEEEEeecc-----cccCCCCCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEE
Q 005887 467 SGYTEFSVAILTVSDT-----VASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLI 541 (671)
Q Consensus 467 ~~~~~~~v~IIt~GdE-----l~~G~~~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlV 541 (671)
..+++++++|||+||+ +..|++.|+|+++|+++|+++ |+++.++.+|+||++.|+++++.+.+..++|+|
T Consensus 11 ~~~~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~-----G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlV 85 (178)
T 3iwt_A 11 NAPKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIEN-----GHKIIGYSLVPDDKIKILKAFTDALSIDEVDVI 85 (178)
T ss_dssp --CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHT-----TCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEE
T ss_pred cCCCCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHC-----CCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEE
Confidence 3478899999999995 457899999999999999999 999999999999999999999987654679999
Q ss_pred EeecCCCCCCCCCChHHHHHhhhhcCCCeeeeeecccc---cccchhhhcccccccccceEEEeCCCChhhHHHHHHH-H
Q 005887 542 LTLGGTGFTPRDVTPEATKELIERETPGLLYVMMQESL---KVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEA-L 617 (671)
Q Consensus 542 IttGGtG~~~~D~T~eal~~~~~~~l~gi~e~~~~~~~---~~~pg~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~-i 617 (671)
|||||+|+|+||+|+|++++++++.++++++.++.... ...+++++++..+|+.++++||+|||+|.+++.+|+. +
T Consensus 86 ittGG~g~~~~D~t~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~G~~~~~~i~~LPG~P~~~~~~~~~~v 165 (178)
T 3iwt_A 86 ISTGGTGYSPTDITVETIRKLFDREIEGFSDVFRLVSFNDPEVKAAAYLTKASAGIIGKKIVYLLPGSPDAVKLALKELI 165 (178)
T ss_dssp EEESCCSSSTTCCHHHHHGGGCSEECHHHHHHHHHHHHTSTTTGGGGGGCCCEEEEETTEEEEEECSCHHHHHHHHHHTH
T ss_pred EecCCcccCCCCchHHHHHHhhhcccccHHHHHHHHHhccccccccccccccceeeECCEEEEECCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999998876553322 2345667778888999999999999999999999987 5
Q ss_pred HHHHHHHHHhhc
Q 005887 618 LPALKHALKQIK 629 (671)
Q Consensus 618 lp~L~~~~~~l~ 629 (671)
+|+|+|++++++
T Consensus 166 ~P~L~h~~~~ir 177 (178)
T 3iwt_A 166 LPEVGHLVYLVR 177 (178)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 799999999876
No 21
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=99.95 E-value=2.6e-30 Score=250.71 Aligned_cols=146 Identities=18% Similarity=0.338 Sum_probs=130.8
Q ss_pred eecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcc-cccEEEecC
Q 005887 188 YRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSA-GIDILLTSG 266 (671)
Q Consensus 188 ~~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~-~~DiVIttG 266 (671)
|++|||+||+||||+ |+++|+|+++|+++|+++|+++..+.+++||++.|+++|++++++ ++|+|||||
T Consensus 8 ~~~~~v~Ii~tGdE~----------g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittG 77 (172)
T 1mkz_A 8 FIPTRIAILTVSNRR----------GEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITG 77 (172)
T ss_dssp CCCCEEEEEEECSSC----------CGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEES
T ss_pred CCCCEEEEEEEeCCC----------CcccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCC
Confidence 789999999999993 789999999999999999999999999999999999999999874 499999999
Q ss_pred CcccCCccchhhhhccc------c-eEEEecccccC-CCcceeeEeccccCchhhhhhhhhccCCCCceeEEEEEeEeee
Q 005887 267 GVSMGDKDFVKPLLQKK------G-TIYFNKVCMKP-GKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYIV 338 (671)
Q Consensus 267 G~s~G~~D~~~~~l~~~------g-~i~f~~v~~~P-Gkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v~ 338 (671)
|+|+|++|+|+++++++ | +.+||+++++| |+|+.+++.-. + ..++++||+|||||.++..+|+.++.
T Consensus 78 G~g~~~~D~t~ea~~~~~~~~l~g~~~~~~~i~~~p~G~~~~~a~~~~----G-~~~~~~v~~LPG~P~~~~~~~~~~v~ 152 (172)
T 1mkz_A 78 GTGLTEGDQAPEALLPLFDREVEGFGEVFRMLSFEEIGTSTLQSRAVA----G-VANKTLILAMPGSTKACRTAWENIIA 152 (172)
T ss_dssp CCSSSTTCCHHHHHGGGCSEECHHHHHHHHHHHHHHHGGGGGGCCCEE----E-EETTEEEEEECSSHHHHHHHHHHTHH
T ss_pred CCCCCCCCCHHHHHHHHhcccCCccHHHHHHHhhcccCcceecccccc----e-eECCEEEEECCCCHHHHHHHHHHHHH
Confidence 99999999999999997 6 78899999999 99998765210 0 00258999999999999999999999
Q ss_pred chhhcccCCC
Q 005887 339 PAIRHLSGWA 348 (671)
Q Consensus 339 P~L~~l~G~~ 348 (671)
|+|++++|..
T Consensus 153 p~L~~~~~~~ 162 (172)
T 1mkz_A 153 PQLDARTRPC 162 (172)
T ss_dssp HHHCTTCSSC
T ss_pred HHHhhhcccc
Confidence 9999988853
No 22
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=99.95 E-value=7.7e-30 Score=246.31 Aligned_cols=142 Identities=20% Similarity=0.327 Sum_probs=128.8
Q ss_pred EeecceEEEeecCCcccccccccccccccccchhHHHHHHHHHh-----ccceeeeecccCCHHHHHHHhhhhhc-cccc
Q 005887 187 VYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQ-----HCKLIDLGIVRDDEEELEKTLDNAFS-AGID 260 (671)
Q Consensus 187 V~~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~-----G~~v~~~~iv~Dd~~~i~~~l~~a~~-~~~D 260 (671)
.|++|||+||+||||+. .|+++|+|+++|.++|+++ |+++.++.+++||++.|+++|+++++ +++|
T Consensus 2 ~~~~~rv~IistGde~~--------~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~D 73 (167)
T 1uuy_A 2 PGPEYKVAILTVSDTVS--------AGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMD 73 (167)
T ss_dssp -CCSEEEEEEEECHHHH--------TTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCS
T ss_pred CCCCcEEEEEEECCccc--------CCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHhcCCCC
Confidence 36899999999999974 5789999999999999998 99999999999999999999999984 2599
Q ss_pred EEEecCCcccCCccchhhhhccc------c---eEEEecccccCCCcc---eeeEeccccCchhhhhhhhhccCCCCcee
Q 005887 261 ILLTSGGVSMGDKDFVKPLLQKK------G---TIYFNKVCMKPGKPL---TFAEINIKPTDDVMVNKILAFGLPGNPVS 328 (671)
Q Consensus 261 iVIttGG~s~G~~D~~~~~l~~~------g---~i~f~~v~~~PGkp~---~~a~~~~~~~~~~~~~~~~v~~LPGnP~a 328 (671)
+||||||+|+|++|+|+++++++ | .++|++++++||+++ .+|.++ +++||+|||||.|
T Consensus 74 lVittGG~g~g~~D~t~~a~~~~~~~~l~g~~~~~~~~g~~~~Pg~~~sr~~~G~~~----------~~~v~~LPG~P~s 143 (167)
T 1uuy_A 74 LILTLGGTGFTPRDVTPEATKKVIERETPGLLFVMMQESLKITPFAMLARSAAGIRG----------STLIINMPGNPNA 143 (167)
T ss_dssp EEEEESCCSSSTTCCHHHHHHHHCSEECHHHHHHHHHHHHHHCGGGGGCCCCEEEET----------TEEEEEECSSTTH
T ss_pred EEEECCCCCCCCCCchHHHHHHHhcCCCCcHHHHHHhcccccCCCCcccceeEEEEC----------CEEEEECCCCHHH
Confidence 99999999999999999999998 6 388999999999985 778775 5899999999999
Q ss_pred EEEEEeEeeechhhcccCC
Q 005887 329 CIVCFHLYIVPAIRHLSGW 347 (671)
Q Consensus 329 a~~~~~~~v~P~L~~l~G~ 347 (671)
+.++|+.|+ |+|+++++.
T Consensus 144 ~~~~~~~~~-P~L~~~~~~ 161 (167)
T 1uuy_A 144 VAECMEALL-PALKHALKQ 161 (167)
T ss_dssp HHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHH
Confidence 999999996 999988763
No 23
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=99.94 E-value=2.7e-29 Score=241.80 Aligned_cols=142 Identities=18% Similarity=0.297 Sum_probs=125.5
Q ss_pred cceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcc-cccEEEecCCc
Q 005887 190 TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSA-GIDILLTSGGV 268 (671)
Q Consensus 190 ~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~-~~DiVIttGG~ 268 (671)
.|||+||+||||+. .|+|+|+|+++|+++|+++|+++..+.+++||++.|+++|++++++ ++|+||||||+
T Consensus 1 ~~~v~Ii~tGdEl~--------~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~ 72 (164)
T 2is8_A 1 MFRVGILTVSDKGF--------RGERQDTTHLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGT 72 (164)
T ss_dssp CEEEEEEEECHHHH--------HTSSCCCHHHHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred CcEEEEEEEcCccc--------CCCcccchHHHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 37999999999985 6999999999999999999999999999999999999999999863 49999999999
Q ss_pred ccCCccchhhhhcccc-e--------EEEecccccCCCcceeeEeccccCchhhhhhhhhccCCCCceeEEEEEeEeeec
Q 005887 269 SMGDKDFVKPLLQKKG-T--------IYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYIVP 339 (671)
Q Consensus 269 s~G~~D~~~~~l~~~g-~--------i~f~~v~~~PGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v~P 339 (671)
|+|++|+|++++++++ + +.|++++++||+|+.+|..+. .++++||+|||||.++..+|+. +.|
T Consensus 73 g~g~~D~t~ea~~~~~~~~l~g~~~~~~~~~~~~~p~~~l~~g~~G~-------~~~~~v~~LPG~P~~~~~~~~~-v~p 144 (164)
T 2is8_A 73 GLAPRDRTPEATRELLDREVPGLAELMRLVGLRKTPMAALSRGVAGV-------RGRTLILNLPGSPKGARESLEA-VLP 144 (164)
T ss_dssp SSSTTCCHHHHHHTTCSEECHHHHHHHTTTTCSSCCGGGGCCCCEEE-------ETTEEEEEECSSHHHHHHHHHH-HGG
T ss_pred CCCCCCChHHHHHHHhCCCCccHHHHHHHcCcCcCCceeeeeeeEEE-------ECCeEEEECCCCHHHHHHHHHH-HHH
Confidence 9999999999999975 2 347899999999995544321 1258999999999999999988 899
Q ss_pred hhhcccCC
Q 005887 340 AIRHLSGW 347 (671)
Q Consensus 340 ~L~~l~G~ 347 (671)
+|+++++.
T Consensus 145 ~l~~~~~~ 152 (164)
T 2is8_A 145 VLPHALSL 152 (164)
T ss_dssp GHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998774
No 24
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=99.94 E-value=6.5e-29 Score=240.86 Aligned_cols=148 Identities=32% Similarity=0.477 Sum_probs=130.5
Q ss_pred CCCceEEEEEEEEeecccccCCCCCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeec
Q 005887 466 CSGYTEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLG 545 (671)
Q Consensus 466 ~~~~~~~~v~IIt~GdEl~~G~~~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttG 545 (671)
.+.+++++|+||+|||| .|+++|+|+++|+++|+++ |+++..+.+|+||++.|+++|+++++..++|+|||||
T Consensus 5 ~~~~~~~~v~Ii~tGdE--~g~i~D~n~~~l~~~L~~~-----G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittG 77 (172)
T 1mkz_A 5 STEFIPTRIAILTVSNR--RGEEDDTSGHYLRDSAQEA-----GHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITG 77 (172)
T ss_dssp CSSCCCCEEEEEEECSS--CCGGGCHHHHHHHHHHHHT-----TCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEES
T ss_pred CCCCCCCEEEEEEEeCC--CCcccCccHHHHHHHHHHC-----CCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCC
Confidence 45689999999999999 4899999999999999999 9999999999999999999999998522599999999
Q ss_pred CCCCCCCCCChHHHHHhhhhcCCCeeeeeecccccccc-hhhh--cccccccccceEEEeCCCChhhHHHHHHHH-HHHH
Q 005887 546 GTGFTPRDVTPEATKELIERETPGLLYVMMQESLKVTP-FAML--SRSAAGIRGSTLIINMPGNPNAVAECMEAL-LPAL 621 (671)
Q Consensus 546 GtG~~~~D~T~eal~~~~~~~l~gi~e~~~~~~~~~~p-g~~l--sr~~~G~~~~~~i~~LPG~P~a~~~~~~~i-lp~L 621 (671)
|+|+|++|+|+||++++++++++|+++. ++++.++| |+++ +|..+|+.++++||+|||+|.+++.+|+.+ +|+|
T Consensus 78 G~g~~~~D~t~ea~~~~~~~~l~g~~~~--~~~i~~~p~G~~~~~a~~~~G~~~~~~v~~LPG~P~~~~~~~~~~v~p~L 155 (172)
T 1mkz_A 78 GTGLTEGDQAPEALLPLFDREVEGFGEV--FRMLSFEEIGTSTLQSRAVAGVANKTLILAMPGSTKACRTAWENIIAPQL 155 (172)
T ss_dssp CCSSSTTCCHHHHHGGGCSEECHHHHHH--HHHHHHHHHGGGGGGCCCEEEEETTEEEEEECSSHHHHHHHHHHTHHHHH
T ss_pred CCCCCCCCCHHHHHHHHhcccCCccHHH--HHHHhhcccCcceecccccceeECCEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998764 55677777 7654 344467788999999999999999999985 6876
Q ss_pred H
Q 005887 622 K 622 (671)
Q Consensus 622 ~ 622 (671)
.
T Consensus 156 ~ 156 (172)
T 1mkz_A 156 D 156 (172)
T ss_dssp C
T ss_pred h
Confidence 4
No 25
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=99.94 E-value=4.8e-29 Score=240.73 Aligned_cols=141 Identities=14% Similarity=0.167 Sum_probs=115.4
Q ss_pred cceEEEeecCCcccccccccccccccccchhHHHHHH----HHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEec
Q 005887 190 TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAA----AMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTS 265 (671)
Q Consensus 190 ~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~----l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVItt 265 (671)
.+||+||+||||+. .|+|+|+|+++|+++ |+++|+++..+.+++||++.|+++|++++++++|+||||
T Consensus 5 ~~~v~Ii~~GdEl~--------~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVitt 76 (167)
T 2g2c_A 5 HIKSAIIVVSDRIS--------TGTRENKALPLLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITA 76 (167)
T ss_dssp EEEEEEEEECHHHH--------HTSSCCCHHHHHHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred ccEEEEEEECCccc--------CCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEEC
Confidence 47999999999985 699999999999999 999999999999999999999999999987349999999
Q ss_pred CCcccCCccchhhhhccc------c-eEEEecccccCCCcce------eeEeccccCchhhhhhhhhccCCCCceeEEEE
Q 005887 266 GGVSMGDKDFVKPLLQKK------G-TIYFNKVCMKPGKPLT------FAEINIKPTDDVMVNKILAFGLPGNPVSCIVC 332 (671)
Q Consensus 266 GG~s~G~~D~~~~~l~~~------g-~i~f~~v~~~PGkp~~------~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~ 332 (671)
||+|+|++|+|+++++++ | +.+|+++.++|+ |+. +|..++. .++++||+|||||.++..+
T Consensus 77 GG~g~~~~D~t~ea~~~~~~~~l~g~~~~~~~~~~~~~-p~a~l~r~~aG~~~~~------~~~~~v~~LPG~P~~~~~~ 149 (167)
T 2g2c_A 77 GGTGIRAKNQTPEATASFIHTRCEGLEQQILIHGSTHT-HLAGLSRGIVGVTGRD------DHAALIVNAPSSSGGITDT 149 (167)
T ss_dssp SCCSSSTTCCHHHHHHTTCSEECHHHHHHHHHHC--------CCCCCCEEESCSS------TTCCEEEEECSSHHHHHHH
T ss_pred CCCCCCCCcChHHHHHHHhCCcCccHHHHHHHhcCCcC-CceeeeccccceecCC------CCCEEEEECCCCHHHHHHH
Confidence 999999999999999997 3 467899999999 553 4554310 0128999999999999999
Q ss_pred EeEeeechhhcccC
Q 005887 333 FHLYIVPAIRHLSG 346 (671)
Q Consensus 333 ~~~~v~P~L~~l~G 346 (671)
|+ ++.|+|+++++
T Consensus 150 ~~-~v~P~L~~~~~ 162 (167)
T 2g2c_A 150 WA-VISPVIPNIFE 162 (167)
T ss_dssp HH-HHGGGHHHHHH
T ss_pred HH-HHHHHHHHHHH
Confidence 99 99999998865
No 26
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=99.94 E-value=8e-29 Score=241.53 Aligned_cols=141 Identities=22% Similarity=0.338 Sum_probs=126.9
Q ss_pred ecceEEEeecCCcccccccccccccccccchhHHHHHHHH---HhccceeeeecccCCHHHHHHHhhhhhcc-cccEEEe
Q 005887 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAM---QQHCKLIDLGIVRDDEEELEKTLDNAFSA-GIDILLT 264 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~---~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~-~~DiVIt 264 (671)
++|||+||+||||+. .|+|+|+|+++|+++|+ ++|+++ .+.+++||++.|+++|++++++ ++|+|||
T Consensus 4 ~~~rv~IistGdE~~--------~G~i~Dsn~~~l~~~l~~l~~~G~~v-~~~iv~Dd~~~I~~~l~~~~~~~~~DlVit 74 (178)
T 2pbq_A 4 KKAVIGVVTISDRAS--------KGIYEDISGKAIIDYLKDVIITPFEV-EYRVIPDERDLIEKTLIELADEKGCSLILT 74 (178)
T ss_dssp -CCEEEEEEECHHHH--------HTSSCCHHHHHHHHHHHHHBCSCCEE-EEEEECSCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCEEEEEEeCCcCC--------CCCeecchHHHHHHHHHHHHhCCCEE-EEEEcCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 789999999999975 69999999999999998 899999 8899999999999999999862 4999999
Q ss_pred cCCcccCCccchhhhhcccc-------eEEEecccccCCCcce------eeEeccccCchhhhhhhhhccCCCCceeEEE
Q 005887 265 SGGVSMGDKDFVKPLLQKKG-------TIYFNKVCMKPGKPLT------FAEINIKPTDDVMVNKILAFGLPGNPVSCIV 331 (671)
Q Consensus 265 tGG~s~G~~D~~~~~l~~~g-------~i~f~~v~~~PGkp~~------~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~ 331 (671)
|||+|+|++|+|++++++++ +..|++++++| +|+. +|..+ +++||+|||||.++..
T Consensus 75 tGG~g~g~~D~t~ea~~~~~~~~l~g~~~~~~~v~~~~-~p~~~lsrg~ag~~~----------~~~v~~LPG~P~~~~~ 143 (178)
T 2pbq_A 75 TGGTGPAPRDVTPEATEAVCEKMLPGFGELMRQVSLKQ-VPTAILSRQTAGIRG----------SCLIVNLPGKPQSIKV 143 (178)
T ss_dssp ESCCSSSTTCCHHHHHHHHCSEECHHHHHHHHHHHHTT-CGGGGGCCCCEEEET----------TEEEEEECSSHHHHHH
T ss_pred CCCCCCCCCCchHHHHHHHhCCCCCChHHHHHHHhccc-CcccccccceeeeEC----------CEEEEECCCCHHHHHH
Confidence 99999999999999999975 36799999999 8883 46654 5899999999999999
Q ss_pred EEeEe--eechhhcccCCCC
Q 005887 332 CFHLY--IVPAIRHLSGWAN 349 (671)
Q Consensus 332 ~~~~~--v~P~L~~l~G~~~ 349 (671)
+|+.+ +.|.|.+++|...
T Consensus 144 ~~~~~~~v~p~l~~~~~~~~ 163 (178)
T 2pbq_A 144 CLDAVMPAIPYCIDLIGGAY 163 (178)
T ss_dssp HHHHHGGGHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHhcCCC
Confidence 99999 8999999998653
No 27
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=99.94 E-value=2.4e-28 Score=266.75 Aligned_cols=169 Identities=20% Similarity=0.282 Sum_probs=154.1
Q ss_pred cccceecccceEEEEEEecccCCCCCcceeeeEecccccCCCCceeeccCCCceEEEEEEEEeecccc-------cCCCC
Q 005887 417 ATGSVISAGTLVSAIVISDISSTDNSKIDTSLVLGSTLQGSKPKEVTTDCSGYTEFSVAILTVSDTVA-------SGAGP 489 (671)
Q Consensus 417 ~g~~~i~aG~~V~v~ll~~l~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIt~GdEl~-------~G~~~ 489 (671)
+|...+++|+.+....++.|++.|+.+|+| |++++|+||+||||+. .|+++
T Consensus 145 ~G~~vl~~G~~l~p~~i~llas~G~~~V~V----------------------~~~~rv~iistGdEl~~~g~~~~~G~i~ 202 (411)
T 1g8l_A 145 AGAVVFPAGTRLTTAELPVIASLGIAEVPV----------------------IRKVRVALFSTGDELQLPGQPLGDGQIY 202 (411)
T ss_dssp TTSEEECTTCBCCTTTHHHHHHTTCCEEEE----------------------ECCCEEEEEEECTTEECTTSCCCSSCEE
T ss_pred CCCEEEcCCcEECHHHHHHHHhCCCceEEe----------------------cCCCEEEEEEcCccccCCCCCCCCCcEE
Confidence 344456667777777778899999999999 9999999999999998 89999
Q ss_pred CCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCCCCCCCChHHHHHhhhhcCCC
Q 005887 490 DRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPG 569 (671)
Q Consensus 490 D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~D~T~eal~~~~~~~l~g 569 (671)
|+|+++|+++|+++ |+++..+.+++||++.|+++|++++ .++|+||||||+|+|++|+|++++++++ +
T Consensus 203 dsn~~~L~~~l~~~-----G~~v~~~~iv~Dd~~~i~~al~~a~--~~~DlvittGG~s~g~~D~t~~al~~~G-~---- 270 (411)
T 1g8l_A 203 DTNRLAVHLMLEQL-----GCEVINLGIIRDDPHALRAAFIEAD--SQADVVISSGGVSVGEADYTKTILEELG-E---- 270 (411)
T ss_dssp CCHHHHHHHHHHHT-----TCEEEEEEEECSCHHHHHHHHHHHH--HHCSEEEECSSSCSSSCSHHHHHHHHHS-E----
T ss_pred cCchHHHHHHHHHC-----CCEEEEEEEeCCCHHHHHHHHHHHh--hcCCEEEECCCCCCCCcccHHHHHHhcC-c----
Confidence 99999999999999 9999999999999999999999998 4899999999999999999999999985 2
Q ss_pred eeeeeecccccccchhhhcccccccccceEEEeCCCChhhHHHHHHHH-HHHHHHHHH
Q 005887 570 LLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEAL-LPALKHALK 626 (671)
Q Consensus 570 i~e~~~~~~~~~~pg~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~i-lp~L~~~~~ 626 (671)
+.||++.++||+++ ++|+.++++||+|||||.+++.+|+.+ +|+|.++.+
T Consensus 271 ----i~f~~va~~PG~p~---~~g~~~~~~v~~LPGnP~sa~~~~~~~v~P~L~~l~g 321 (411)
T 1g8l_A 271 ----IAFWKLAIKPGKPF---AFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKLSG 321 (411)
T ss_dssp ----EEEEEBSEESCCEE---EEEECSSSEEEECCSSHHHHHHHHHHTHHHHHHHHHT
T ss_pred ----EEEEEEEeeCCCcE---EEEEECCEEEEEcCCChHHHHHHHHHHHHHHHHHHhC
Confidence 78899999999997 888899999999999999999999975 798887776
No 28
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=99.94 E-value=1.8e-28 Score=267.05 Aligned_cols=169 Identities=19% Similarity=0.300 Sum_probs=148.2
Q ss_pred cccceecccceEEEEEEecccCCCCCcceeeeEecccccCCCCceeeccCCCceEEEEEEEEeecccc-------cCCCC
Q 005887 417 ATGSVISAGTLVSAIVISDISSTDNSKIDTSLVLGSTLQGSKPKEVTTDCSGYTEFSVAILTVSDTVA-------SGAGP 489 (671)
Q Consensus 417 ~g~~~i~aG~~V~v~ll~~l~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIt~GdEl~-------~G~~~ 489 (671)
+|...+++|+.+....++.|++.|+.+|+| |++++|+||+||||+. .|+++
T Consensus 148 ~G~~ll~~G~~l~p~~i~llas~G~~~V~V----------------------~~~prv~IistGdEl~~~g~~~~~G~i~ 205 (402)
T 1uz5_A 148 KGRLLVKKGERLGFKQTALLSAVGINKVKV----------------------FRKPKVAVISTGNEIVPPGNELKPGQIY 205 (402)
T ss_dssp TTCEEECTTCBCCHHHHHHHHHTTCCEEEE----------------------ECCCEEEEEEECTTEECTTSCCCTTCEE
T ss_pred CCCEEEcCCCEECHHHHHHHHhCCCceeee----------------------cCCCEEEEEEcCccccCCCCCCCCCcEE
Confidence 344456667777777788999999999999 9999999999999996 89999
Q ss_pred CCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCCCCCCCChHHHHHhhhhcCCC
Q 005887 490 DRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPG 569 (671)
Q Consensus 490 D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~D~T~eal~~~~~~~l~g 569 (671)
|+|+++|+++|+++ |+++..+.+++||++.|+++|++++ .++|+||||||+|+|++|+|+++++++++
T Consensus 206 DsN~~~L~~~l~~~-----G~~v~~~~iv~Dd~~~i~~~l~~a~--~~~DlVittGG~s~g~~D~t~~al~~~G~----- 273 (402)
T 1uz5_A 206 DINGRALCDAINEL-----GGEGIFMGVARDDKESLKALIEKAV--NVGDVVVISGGASGGTKDLTASVIEELGE----- 273 (402)
T ss_dssp CCHHHHHHHHHHHH-----TSEEEEEEEECSSHHHHHHHHHHHH--HHCSEEEEECCC-----CHHHHHHHHHSE-----
T ss_pred cchHHHHHHHHHhC-----CCeEEEEEEeCCCHHHHHHHHHHHh--hCCCEEEEcCCCCCCCcccHHHHHHhhCC-----
Confidence 99999999999999 9999999999999999999999998 47999999999999999999999999852
Q ss_pred eeeeeecccccccchhhhcccccccccceEEEeCCCChhhHHHHHHHH-HHHHHHHHH
Q 005887 570 LLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEAL-LPALKHALK 626 (671)
Q Consensus 570 i~e~~~~~~~~~~pg~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~i-lp~L~~~~~ 626 (671)
+.||++.++||+++ .+|..++++||+|||||.+++.+|+.+ .|+|.++.+
T Consensus 274 ----~~f~~va~~PG~p~---~~g~~~~~~v~~LPG~P~sa~~~~~~~v~P~L~~~~g 324 (402)
T 1uz5_A 274 ----VKVHGIAIQPGKPT---IIGVIKGKPVFGLPGYPTSCLTNFTLLVVPLLLRALG 324 (402)
T ss_dssp ----EEEECBSEESCTTC---EEEEETTEEEEEECSSHHHHHHHHHHHHHHHHHHHTT
T ss_pred ----EEEeeEeecCCCCE---EEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 78999999999986 788899999999999999999999985 698877665
No 29
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=99.93 E-value=1.5e-27 Score=261.56 Aligned_cols=174 Identities=17% Similarity=0.266 Sum_probs=151.2
Q ss_pred ccccceecccceEEEEEEecccCCCCCcceeeeEecccccCCCCceeeccCCCceEEEEEEEEeecccc-------cCCC
Q 005887 416 PATGSVISAGTLVSAIVISDISSTDNSKIDTSLVLGSTLQGSKPKEVTTDCSGYTEFSVAILTVSDTVA-------SGAG 488 (671)
Q Consensus 416 P~g~~~i~aG~~V~v~ll~~l~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIt~GdEl~-------~G~~ 488 (671)
.+|...+++|+.+....++.|++.|+.+|+| |++++|+||+||||+. .|++
T Consensus 148 ~~G~~ll~~G~~l~p~~iglLas~G~~~v~V----------------------~~~prv~IistGdEl~~~g~~~~~G~i 205 (419)
T 2fts_A 148 KRGECVLAKGTHMGPSEIGLLATVGVTEVEV----------------------NKFPVVAVMSTGNELLNPEDDLLPGKI 205 (419)
T ss_dssp CTTCEEECTTCBCCHHHHHHHHHHTCCEEEE----------------------ECCCCEEEEEECTTEECTTSCCCTTCE
T ss_pred CCCCEEECCCCCcCHHHHHHHHhCCCCeeEe----------------------cCCCEEEEEEechhccCCCCCCCCCcE
Confidence 3455567777777778888999999999999 9999999999999998 8999
Q ss_pred CCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCCCCCCCChHHHH-HhhhhcC
Q 005887 489 PDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATK-ELIERET 567 (671)
Q Consensus 489 ~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~D~T~eal~-~~~~~~l 567 (671)
+|+|+++|+++|+++ |+++..+.+++||++.|+++|++++ .++|+||||||+|+|++|+|+++++ +++.
T Consensus 206 ~dsN~~~L~~~l~~~-----G~~v~~~~iv~Dd~~~i~~~l~~a~--~~~DlVittGG~s~g~~D~t~~al~~~lg~--- 275 (419)
T 2fts_A 206 RDSNRSTLLATIQEH-----GYPTINLGIVGDNPDDLLNALNEGI--SRADVIITSGGVSMGEKDYLKQVLDIDLHA--- 275 (419)
T ss_dssp ECCHHHHHHHHHHTT-----TCCEEEEEEECSSHHHHHHHHHHHH--HHCSEEEEESCCSSSCCHHHHHHHHTTTCC---
T ss_pred ecCchHHHHHHHHHC-----CCEEEEEeecCCCHHHHHHHHHHHH--hcCCEEEEcCCCcCCCcccHHHHHHHHcCC---
Confidence 999999999999999 9999999999999999999999998 4799999999999999999999995 4432
Q ss_pred CCeeeeeecccccccchhhhcccccccc-cceEEEeCCCChhhHHHHHHHH-HHHHHHHHH
Q 005887 568 PGLLYVMMQESLKVTPFAMLSRSAAGIR-GSTLIINMPGNPNAVAECMEAL-LPALKHALK 626 (671)
Q Consensus 568 ~gi~e~~~~~~~~~~pg~~lsr~~~G~~-~~~~i~~LPG~P~a~~~~~~~i-lp~L~~~~~ 626 (671)
.+.|+++.++||+++..+..++. ++++||+|||||.+++.+|+.+ +|+|.++.+
T Consensus 276 -----~~~f~~v~~~PG~p~~~g~~~~~~~~~~v~~LPG~P~sa~~~~~~~v~P~L~~~~g 331 (419)
T 2fts_A 276 -----QIHFGRVFMKPGLPTTFATLDIDGVRKIIFALPGNPVSAVVTCNLFVVPALRKMQG 331 (419)
T ss_dssp -----EEEESEEECBSCTTCEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHTT
T ss_pred -----ceEEeEEecCCCCceEEEEEeecCCCeEEEECCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 26789999999999854443322 2699999999999999999975 798876654
No 30
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=99.93 E-value=1.8e-27 Score=234.52 Aligned_cols=141 Identities=16% Similarity=0.173 Sum_probs=118.2
Q ss_pred ecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccc--eeeeecccCCHHHHHHHhhhhhcc-cccEEEec
Q 005887 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCK--LIDLGIVRDDEEELEKTLDNAFSA-GIDILLTS 265 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~--v~~~~iv~Dd~~~i~~~l~~a~~~-~~DiVItt 265 (671)
++|||+||+||||+. .|+++|+|+++|+++|+++|++ +..+.+++||++.|+++|++++++ ++|+||||
T Consensus 2 ~~~rv~IIttGdEl~--------~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitT 73 (195)
T 1di6_A 2 ATLRIGLVSISDRAS--------SGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTT 73 (195)
T ss_dssp CCEEEEEEEEECC---------------CCHHHHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred CCCEEEEEEECCCCC--------CCeEEchHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 478999999999986 6999999999999999999998 788999999999999999999862 49999999
Q ss_pred CCcccCCccchhhhhcccc-------eEEEecccccCCCcce-----eeEeccccCchhhhhhhhhccCCCCceeEEEEE
Q 005887 266 GGVSMGDKDFVKPLLQKKG-------TIYFNKVCMKPGKPLT-----FAEINIKPTDDVMVNKILAFGLPGNPVSCIVCF 333 (671)
Q Consensus 266 GG~s~G~~D~~~~~l~~~g-------~i~f~~v~~~PGkp~~-----~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~ 333 (671)
||+|+|++|+|++++++++ +.+|+++.++|+.+.+ +|..+ +++||+|||||.++..+|
T Consensus 74 GGtg~g~~D~T~ea~~~~~~~~l~g~~~~~~~~~~~~~p~a~lsr~~aG~~~----------~~~v~~LPG~P~a~~~~~ 143 (195)
T 1di6_A 74 GGTGPARRDVTPDATLAVADREMPGFGEQMRQISLHFVPTAILSRQVGVIRK----------QALILNLPGQPKSIKETL 143 (195)
T ss_dssp SCCSSSTTCCHHHHHHHTCSEECHHHHHHHHHHHHTTCGGGGGCCCCEEEET----------TEEEEEECSSHHHHHHHH
T ss_pred CCCCCCCCccHHHHHHHHhcccCccHHHHHHHhcCCCCCcceeccceEEEEC----------CEEEEECCCCHHHHHHHH
Confidence 9999999999999999873 4568999999975433 24433 589999999999999999
Q ss_pred eEe-----------eechhhcccCC
Q 005887 334 HLY-----------IVPAIRHLSGW 347 (671)
Q Consensus 334 ~~~-----------v~P~L~~l~G~ 347 (671)
+.| +.|+|.+++..
T Consensus 144 ~~~~~~~~~~~~~~v~p~l~~~~~~ 168 (195)
T 1di6_A 144 EGVKDAEGNVVVHGIFASVPYCIQL 168 (195)
T ss_dssp HEEECTTSCEEEECGGGGHHHHHHH
T ss_pred HHHHhhcccchhhhHHHHHHHHHHH
Confidence 999 99998877653
No 31
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=99.92 E-value=3.5e-27 Score=230.05 Aligned_cols=157 Identities=19% Similarity=0.322 Sum_probs=128.9
Q ss_pred EEEeecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhc-ccccEEE
Q 005887 185 VKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFS-AGIDILL 263 (671)
Q Consensus 185 v~V~~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~-~~~DiVI 263 (671)
-...+++||+||++|||..+-. +..|+|+|+|+++|.++|+++|+++.++.+++||++.|.++++++.. +++|+||
T Consensus 10 ~~~~~~~~v~iitvsd~~~~~~---~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVi 86 (178)
T 3iwt_A 10 ENAPKSLNFYVITISTSRYEKL---LKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVII 86 (178)
T ss_dssp ---CCCCEEEEEEECHHHHHHH---HTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEE
T ss_pred hcCCCCCEEEEEEEcCCCcccc---ccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 3456789999999999976421 56899999999999999999999999999999999999999987642 3599999
Q ss_pred ecCCcccCCccchhhhhcccc-------eEEEecccccCCCcceeeEeccccCchhhhhhhhhccCCCCceeEEEEEeEe
Q 005887 264 TSGGVSMGDKDFVKPLLQKKG-------TIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLY 336 (671)
Q Consensus 264 ttGG~s~G~~D~~~~~l~~~g-------~i~f~~v~~~PGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~ 336 (671)
||||+|+|++|+|+++++++. +..|++++++||++..++....+..+ ..++++||+|||||.++..+|+.+
T Consensus 87 ttGG~g~~~~D~t~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~G--~~~~~~i~~LPG~P~~~~~~~~~~ 164 (178)
T 3iwt_A 87 STGGTGYSPTDITVETIRKLFDREIEGFSDVFRLVSFNDPEVKAAAYLTKASAG--IIGKKIVYLLPGSPDAVKLALKEL 164 (178)
T ss_dssp EESCCSSSTTCCHHHHHGGGCSEECHHHHHHHHHHHHTSTTTGGGGGGCCCEEE--EETTEEEEEECSCHHHHHHHHHHT
T ss_pred ecCCcccCCCCchHHHHHHhhhcccccHHHHHHHHHhcccccccccccccccee--eECCEEEEECCCCHHHHHHHHHHH
Confidence 999999999999999999864 24678999999988766533110000 012689999999999999999999
Q ss_pred eechhhcccC
Q 005887 337 IVPAIRHLSG 346 (671)
Q Consensus 337 v~P~L~~l~G 346 (671)
|.|+|.++..
T Consensus 165 v~P~L~h~~~ 174 (178)
T 3iwt_A 165 ILPEVGHLVY 174 (178)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 32
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=99.90 E-value=1.7e-25 Score=215.59 Aligned_cols=144 Identities=22% Similarity=0.274 Sum_probs=120.7
Q ss_pred EEEEEEEEeecccccCCCCCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCCC
Q 005887 471 EFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFT 550 (671)
Q Consensus 471 ~~~v~IIt~GdEl~~G~~~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~ 550 (671)
+++|+||+||||++.|+++|+|+++|+++|+++ |+++..+.+|+||++.|+++|++++ .++|+||||||+|+|
T Consensus 3 ~~~v~IistGdEll~G~i~DtN~~~l~~~L~~~-----G~~v~~~~iv~Dd~~~I~~~l~~a~--~~~DlVittGG~g~~ 75 (172)
T 3kbq_A 3 AKNASVITVGNEILKGRTVNTNAAFIGNFLTYH-----GYQVRRGFVVMDDLDEIGWAFRVAL--EVSDLVVSSGGLGPT 75 (172)
T ss_dssp -CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHT-----TCEEEEEEEECSCHHHHHHHHHHHH--HHCSEEEEESCCSSS
T ss_pred CCEEEEEEEcccccCCcEEeHHHHHHHHHHHHC-----CCEEEEEEEeCCCHHHHHHHHHHHH--hcCCEEEEcCCCcCC
Confidence 479999999999999999999999999999999 9999999999999999999999998 469999999999999
Q ss_pred CCCCChHHHHHhhhhcCCCeeeeee-----ccccccc----chhhhccc----------cccc---ccceEEEeCCCChh
Q 005887 551 PRDVTPEATKELIERETPGLLYVMM-----QESLKVT----PFAMLSRS----------AAGI---RGSTLIINMPGNPN 608 (671)
Q Consensus 551 ~~D~T~eal~~~~~~~l~gi~e~~~-----~~~~~~~----pg~~lsr~----------~~G~---~~~~~i~~LPG~P~ 608 (671)
+||+|+|++++++++++..+++++. +.+..+. .++.++.+ +.|+ .+++.||.|||+|.
T Consensus 76 ~~D~T~ea~a~~~~~~l~~~~e~~~~i~~~~~~~~~~~~~~k~A~~P~ga~~l~N~~g~apG~~~~~~~~~v~~lPGvP~ 155 (172)
T 3kbq_A 76 FDDMTVEGFAKCIGQDLRIDEDALAMIKKKYGQADLTPQRLKMAKIPPSCRPIENPVGTAPGLICAVGGKKVIILPGVPK 155 (172)
T ss_dssp TTCCHHHHHHHHHTCCCEECHHHHHHHHHHHC---CCHHHHGGGEECTTEEEECCSSSSSCEEEEEETTEEEEEECSSHH
T ss_pred cccchHHHHHHHcCCCeeeCHHHHHHHHHHHcCCCCChHHHhhccCCCCCEECcCCCCcCCeEEEEECCeEEEEeCCCHH
Confidence 9999999999999999987765443 1122222 23333332 2344 35789999999999
Q ss_pred hHHHHHHHHHHHH
Q 005887 609 AVAECMEALLPAL 621 (671)
Q Consensus 609 a~~~~~~~ilp~L 621 (671)
+++.||+.+.|.|
T Consensus 156 e~~~m~~~~~~~~ 168 (172)
T 3kbq_A 156 EMEALLKAMEKDI 168 (172)
T ss_dssp HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHhhc
Confidence 9999999998865
No 33
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=99.89 E-value=1.5e-25 Score=243.62 Aligned_cols=161 Identities=19% Similarity=0.287 Sum_probs=133.7
Q ss_pred cccceecccceEEEEEEecccCCCCCcceeeeEecccccCCCCceeeccCCCceEEEEEEEEeecccc---------cCC
Q 005887 417 ATGSVISAGTLVSAIVISDISSTDNSKIDTSLVLGSTLQGSKPKEVTTDCSGYTEFSVAILTVSDTVA---------SGA 487 (671)
Q Consensus 417 ~g~~~i~aG~~V~v~ll~~l~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIt~GdEl~---------~G~ 487 (671)
+|...+++|+.+....++.|++.|+.+|+| |++++|+||+||||+. .|+
T Consensus 150 ~G~~ll~~G~~l~p~~i~llas~G~~~V~V----------------------~~~prv~IistGdEl~~~~g~~~~~~G~ 207 (396)
T 1wu2_A 150 KGEVVLRKGTILRPQDVAMLKALGIKKVPV----------------------KVKPKVGIIITGSELIEEPSEEGFKEGK 207 (396)
T ss_dssp TTCEEECTTCBCCHHHHHHHHHTTCSEEEE----------------------ECCCEEEEEEECTTEESSCCHHHHHTTC
T ss_pred CCCEeecCCcEEcHHHHHHHHhCCCceeee----------------------cCCCEEEEEEcCcccccCCCCcccCCCc
Confidence 344456667777777788999999999999 9999999999999998 499
Q ss_pred CCCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCCCCCCCChHHHHHhhhhcC
Q 005887 488 GPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERET 567 (671)
Q Consensus 488 ~~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~D~T~eal~~~~~~~l 567 (671)
++|+|+++|+++|+++ |+++..+.+++||++.|+++|+++++ ++|+||||||+|+|++|+ +++++
T Consensus 208 i~Dsn~~~L~~~l~~~-----G~~v~~~~iv~Dd~~~i~~~l~~a~~--~~DlvittGG~s~g~~D~----l~~~G---- 272 (396)
T 1wu2_A 208 IVETNSIMLQGLVEKF-----FGEPILYGVLPDDESIIKETLEKAKN--ECDIVLITGGSAFGDKDY----AHKFV---- 272 (396)
T ss_dssp EECCHHHHHHHHHHHT-----TCEEEEEEEECSCHHHHTTHHHHHHH--CSEEEECC--------CC----STTTC----
T ss_pred EecchHHHHHHHHHHC-----CCEEEEEEEeCCCHHHHHHHHHHHhh--CCCEEEEeCCCCCChhhH----HhhcC----
Confidence 9999999999999999 99999999999999999999999984 699999999999999999 33332
Q ss_pred CCeeeeeecccccccchhhhcccccccccceEEEeCCCChhhHHHHHHHHH-HHHHHHHH
Q 005887 568 PGLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALL-PALKHALK 626 (671)
Q Consensus 568 ~gi~e~~~~~~~~~~pg~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~il-p~L~~~~~ 626 (671)
.+.|+++.++||+++ .+| ++||+|||||.+++.+|+.++ |+|.++.+
T Consensus 273 -----~i~f~~va~~PG~p~---~~g----~~v~~LPG~P~sa~~~~~~~v~P~L~~l~g 320 (396)
T 1wu2_A 273 -----NLLFHGTTIKPGRPF---GYG----EKVFIMSGYPVSVFAQFNLFVKHALAKMVG 320 (396)
T ss_dssp -----CCSEESBSEESCTTC---EEE----TTEEECCSSHHHHHHHHHHTHHHHHHHHHT
T ss_pred -----CEEEeeecccCCCce---Ecc----CeEEECCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 278899999999997 444 899999999999999999974 98877765
No 34
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=99.75 E-value=7.9e-19 Score=169.03 Aligned_cols=91 Identities=20% Similarity=0.304 Sum_probs=83.6
Q ss_pred cceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCcc
Q 005887 190 TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 269 (671)
Q Consensus 190 ~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s 269 (671)
++||+||+|||||+ .|+|+|+|+++|+++|+++|+++..+.+++||++.|+++|++++++ +|+||||||+|
T Consensus 3 ~~~v~IistGdEll--------~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~-~DlVittGG~g 73 (172)
T 3kbq_A 3 AKNASVITVGNEIL--------KGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEV-SDLVVSSGGLG 73 (172)
T ss_dssp -CEEEEEEECHHHH--------TTSSCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHH-CSEEEEESCCS
T ss_pred CCEEEEEEEccccc--------CCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhc-CCEEEEcCCCc
Confidence 58999999999998 4999999999999999999999999999999999999999999975 99999999999
Q ss_pred cCCccchhhhhcc-cc-eEEEe
Q 005887 270 MGDKDFVKPLLQK-KG-TIYFN 289 (671)
Q Consensus 270 ~G~~D~~~~~l~~-~g-~i~f~ 289 (671)
+|++|+|++++++ +| ++.+|
T Consensus 74 ~~~~D~T~ea~a~~~~~~l~~~ 95 (172)
T 3kbq_A 74 PTFDDMTVEGFAKCIGQDLRID 95 (172)
T ss_dssp SSTTCCHHHHHHHHHTCCCEEC
T ss_pred CCcccchHHHHHHHcCCCeeeC
Confidence 9999999999987 45 55443
No 35
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=84.67 E-value=1.5 Score=42.81 Aligned_cols=65 Identities=15% Similarity=0.131 Sum_probs=47.8
Q ss_pred cceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCcc
Q 005887 190 TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 269 (671)
Q Consensus 190 ~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s 269 (671)
.+||++|+|+...- -+|.|...+...++++|+++....+...+++.+.+.|+ ++|.|+.+||-.
T Consensus 27 ~~~i~~Ip~As~~~-----------~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~-----~ad~I~l~GG~~ 90 (206)
T 3l4e_A 27 GKTVTFIPTASTVE-----------EVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLR-----KNDFIYVTGGNT 90 (206)
T ss_dssp TCEEEEECGGGGGC-----------SCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHH-----HSSEEEECCSCH
T ss_pred CCEEEEECCCCCCC-----------CHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHH-----hCCEEEECCCCH
Confidence 58999999985421 12557778889999999988766555567777767665 379999999754
Q ss_pred c
Q 005887 270 M 270 (671)
Q Consensus 270 ~ 270 (671)
.
T Consensus 91 ~ 91 (206)
T 3l4e_A 91 F 91 (206)
T ss_dssp H
T ss_pred H
Confidence 3
No 36
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=78.04 E-value=3 Score=37.68 Aligned_cols=76 Identities=21% Similarity=0.192 Sum_probs=51.3
Q ss_pred ecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc
Q 005887 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 268 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~ 268 (671)
.++||.+.+.|.|.-+.| .-++..+|+..|+++++++.- -.++.+.++.++. ++|+|..|.-.
T Consensus 2 ~~~~vvla~~~~d~HdiG-------------~~~v~~~l~~~G~~Vi~lG~~-~p~e~~v~~a~~~---~~d~v~lS~~~ 64 (137)
T 1ccw_A 2 EKKTIVLGVIGSDCHAVG-------------NKILDHAFTNAGFNVVNIGVL-SPQELFIKAAIET---KADAILVSSLY 64 (137)
T ss_dssp CCCEEEEEEETTCCCCHH-------------HHHHHHHHHHTTCEEEEEEEE-ECHHHHHHHHHHH---TCSEEEEEECS
T ss_pred CCCEEEEEeCCCchhHHH-------------HHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHhc---CCCEEEEEecC
Confidence 357888888877755433 458899999999999999973 3356666666543 58999988865
Q ss_pred ccCCccchhhhhcc
Q 005887 269 SMGDKDFVKPLLQK 282 (671)
Q Consensus 269 s~G~~D~~~~~l~~ 282 (671)
+.. .+.+++.++.
T Consensus 65 ~~~-~~~~~~~i~~ 77 (137)
T 1ccw_A 65 GQG-EIDCKGLRQK 77 (137)
T ss_dssp STH-HHHHTTHHHH
T ss_pred cCc-HHHHHHHHHH
Confidence 332 2334444443
No 37
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=76.78 E-value=3.5 Score=38.40 Aligned_cols=77 Identities=14% Similarity=0.131 Sum_probs=53.2
Q ss_pred ecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc
Q 005887 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 268 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~ 268 (671)
++|||.+...|.|.-+.| .-+++.+|+..|++|++++.- -.++.+.+++++. ++|+|.+|.-.
T Consensus 17 ~~~~vlla~~~gd~HdiG-------------~~~va~~l~~~G~eVi~lG~~-~p~e~lv~aa~~~---~~diV~lS~~~ 79 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRG-------------AKVVARALRDAGFEVVYTGLR-QTPEQVAMAAVQE---DVDVIGVSILN 79 (161)
T ss_dssp CSCEEEEEEESSSSCCHH-------------HHHHHHHHHHTTCEEECCCSB-CCHHHHHHHHHHT---TCSEEEEEESS
T ss_pred CCCEEEEEeCCCCccHHH-------------HHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHhc---CCCEEEEEeec
Confidence 578888888887765444 458899999999999999863 2456666666653 58999988754
Q ss_pred ccCCccchhhhhccc
Q 005887 269 SMGDKDFVKPLLQKK 283 (671)
Q Consensus 269 s~G~~D~~~~~l~~~ 283 (671)
. ...+.+++.++.+
T Consensus 80 ~-~~~~~~~~~i~~L 93 (161)
T 2yxb_A 80 G-AHLHLMKRLMAKL 93 (161)
T ss_dssp S-CHHHHHHHHHHHH
T ss_pred h-hhHHHHHHHHHHH
Confidence 3 2234455555443
No 38
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=73.09 E-value=4.7 Score=38.90 Aligned_cols=76 Identities=11% Similarity=0.104 Sum_probs=53.1
Q ss_pred ecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc
Q 005887 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 268 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~ 268 (671)
++++|.+.+.+.|+-+.| -.+++.+|+..|+++++++. .-..+.+.+++++. ++|+|..|.-.
T Consensus 87 ~~~~vll~~~~gd~H~iG-------------~~~va~~l~~~G~~v~~LG~-~vp~~~l~~~~~~~---~~d~v~lS~~~ 149 (210)
T 1y80_A 87 SVGKIVLGTVKGDLHDIG-------------KNLVAMMLESGGFTVYNLGV-DIEPGKFVEAVKKY---QPDIVGMSALL 149 (210)
T ss_dssp CCCEEEEEEBTTCCCCHH-------------HHHHHHHHHHTTCEEEECCS-SBCHHHHHHHHHHH---CCSEEEEECCS
T ss_pred CCCEEEEEeCCCcccHHH-------------HHHHHHHHHHCCCEEEECCC-CCCHHHHHHHHHHc---CCCEEEEeccc
Confidence 466777776666655443 46899999999999999996 44567777777653 58999999865
Q ss_pred ccCCccchhhhhcc
Q 005887 269 SMGDKDFVKPLLQK 282 (671)
Q Consensus 269 s~G~~D~~~~~l~~ 282 (671)
.. ..+.+++.++.
T Consensus 150 ~~-~~~~~~~~i~~ 162 (210)
T 1y80_A 150 TT-TMMNMKSTIDA 162 (210)
T ss_dssp GG-GTHHHHHHHHH
T ss_pred cc-cHHHHHHHHHH
Confidence 43 33445555544
No 39
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=66.22 E-value=11 Score=37.72 Aligned_cols=78 Identities=12% Similarity=0.061 Sum_probs=54.3
Q ss_pred eecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCC
Q 005887 188 YRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 267 (671)
Q Consensus 188 ~~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG 267 (671)
-++++|.+.+.+.|+-+.| -.+++.+|+..|++|+++|.-- .++.+.+++++. ++|+|..|.-
T Consensus 121 ~~~~~vlla~~~gd~HdiG-------------~~iva~~L~~~G~~Vi~LG~~v-p~e~l~~~~~~~---~~d~V~lS~l 183 (258)
T 2i2x_B 121 KTKGTVVCHVAEGDVHDIG-------------KNIVTALLRANGYNVVDLGRDV-PAEEVLAAVQKE---KPIMLTGTAL 183 (258)
T ss_dssp CCSCEEEEEECTTCCCCHH-------------HHHHHHHHHHTTCEEEEEEEEC-CSHHHHHHHHHH---CCSEEEEECC
T ss_pred CCCCeEEEEeCCCCccHHH-------------HHHHHHHHHHCCCEEEECCCCC-CHHHHHHHHHHc---CCCEEEEEee
Confidence 3577887777776665444 4689999999999999999742 456666666653 5899999986
Q ss_pred cccCCccchhhhhccc
Q 005887 268 VSMGDKDFVKPLLQKK 283 (671)
Q Consensus 268 ~s~G~~D~~~~~l~~~ 283 (671)
.... .+.+++.++.+
T Consensus 184 ~~~~-~~~~~~~i~~l 198 (258)
T 2i2x_B 184 MTTT-MYAFKEVNDML 198 (258)
T ss_dssp CTTT-TTHHHHHHHHH
T ss_pred ccCC-HHHHHHHHHHH
Confidence 5433 34555555543
No 40
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=65.92 E-value=8 Score=40.72 Aligned_cols=82 Identities=11% Similarity=0.006 Sum_probs=49.1
Q ss_pred ecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhc--cceeeeecccCCHHHHHHHhhhhhcccccEEEecC
Q 005887 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQH--CKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSG 266 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G--~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttG 266 (671)
++.+|++|..|. +-+ ..-..+.-.-+..+.+++| +++....-.+++. ...+.|++++++++|+||++|
T Consensus 25 ~~~kIglv~~g~-i~D--------~~f~~~~~~G~~~~~~~~G~~~~~~~~e~~~~~~-d~~~~l~~l~~~g~d~Ii~~g 94 (356)
T 3s99_A 25 EKLKVGFIYIGP-PGD--------FGWTYQHDQARKELVEALGDKVETTFLENVAEGA-DAERSIKRIARAGNKLIFTTS 94 (356)
T ss_dssp -CEEEEEECSSC-GGG--------SSHHHHHHHHHHHHHHHHTTTEEEEEECSCCTTH-HHHHHHHHHHHTTCSEEEECS
T ss_pred CCCEEEEEEccC-CCc--------hhHHHHHHHHHHHHHHHhCCceEEEEEecCCCHH-HHHHHHHHHHHCCCCEEEECC
Confidence 467899998763 110 0111222234555667788 8877776666643 447788888877899999986
Q ss_pred CcccCCccchhhhhccc
Q 005887 267 GVSMGDKDFVKPLLQKK 283 (671)
Q Consensus 267 G~s~G~~D~~~~~l~~~ 283 (671)
.. -.|.+.++.++.
T Consensus 95 ~~---~~~~~~~vA~~~ 108 (356)
T 3s99_A 95 FG---YMDPTVKVAKKF 108 (356)
T ss_dssp GG---GHHHHHHHHTTC
T ss_pred HH---HHHHHHHHHHHC
Confidence 32 234454544443
No 41
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=59.19 E-value=7.9 Score=38.06 Aligned_cols=62 Identities=11% Similarity=0.137 Sum_probs=41.8
Q ss_pred ecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc
Q 005887 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 268 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~ 268 (671)
..+||+||.|+.- . .-.|.|...+...|+++|+++..+... +|+ .+. ++ ++|.|+..||-
T Consensus 30 ~~~~i~iI~~a~~-~----------~~~~~~~~~~~~al~~lG~~~~~v~~~-~d~---~~~----l~-~ad~I~lpGG~ 89 (229)
T 1fy2_A 30 GRRSAVFIPFAGV-T----------QTWDEYTDKTAEVLAPLGVNVTGIHRV-ADP---LAA----IE-KAEIIIVGGGN 89 (229)
T ss_dssp TCCEEEEECTTCC-S----------SCHHHHHHHHHHHHGGGTCEEEETTSS-SCH---HHH----HH-HCSEEEECCSC
T ss_pred CCCeEEEEECCCC-C----------CCHHHHHHHHHHHHHHCCCEEEEEecc-ccH---HHH----Hh-cCCEEEECCCc
Confidence 4689999999852 0 114567777888899999887655443 332 122 33 38999999976
Q ss_pred cc
Q 005887 269 SM 270 (671)
Q Consensus 269 s~ 270 (671)
+.
T Consensus 90 ~~ 91 (229)
T 1fy2_A 90 TF 91 (229)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 42
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=58.30 E-value=7.6 Score=39.82 Aligned_cols=62 Identities=16% Similarity=0.143 Sum_probs=37.4
Q ss_pred ecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccc-eeeeecc----cCCHHHHHHHhhhhhcccccEEE
Q 005887 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCK-LIDLGIV----RDDEEELEKTLDNAFSAGIDILL 263 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~-v~~~~iv----~Dd~~~i~~~l~~a~~~~~DiVI 263 (671)
+++||++|+|-..- + +.........++++|++ +..+.+- .+|+ .+.+.|+ ++|.|+
T Consensus 55 ~~~~I~~IptAs~~--~-----------~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~-~~~~~l~-----~ad~I~ 115 (291)
T 3en0_A 55 NDAIIGIIPSASRE--P-----------LLIGERYQTIFSDMGVKELKVLDIRDRAQGDDS-GYRLFVE-----QCTGIF 115 (291)
T ss_dssp GGCEEEEECTTCSS--H-----------HHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCH-HHHHHHH-----HCSEEE
T ss_pred CCCeEEEEeCCCCC--h-----------HHHHHHHHHHHHHcCCCeeEEEEecCccccCCH-HHHHHHh-----cCCEEE
Confidence 36899999986542 1 11233446788889994 4444331 2332 3333443 389999
Q ss_pred ecCCcc
Q 005887 264 TSGGVS 269 (671)
Q Consensus 264 ttGG~s 269 (671)
.+||-.
T Consensus 116 v~GGnt 121 (291)
T 3en0_A 116 MTGGDQ 121 (291)
T ss_dssp ECCSCH
T ss_pred ECCCCH
Confidence 999854
No 43
>1yqw_A Periplasmic [NIFE] hydrogenase small subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 3cur_A 3cus_A 3h3x_A 1yrq_A 1frf_S
Probab=56.26 E-value=9.1 Score=38.69 Aligned_cols=58 Identities=19% Similarity=0.190 Sum_probs=37.6
Q ss_pred ccccchhHHHHHHHHHhccceeeeecccCC-HHHHHHHhhhhhc--ccccEEEecCCcccCCc
Q 005887 214 QIRDSNRAMLLAAAMQQHCKLIDLGIVRDD-EEELEKTLDNAFS--AGIDILLTSGGVSMGDK 273 (671)
Q Consensus 214 ~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd-~~~i~~~l~~a~~--~~~DiVIttGG~s~G~~ 273 (671)
.+.|+..+.+..+|.+. +++.+...+-|. -+...+.++++++ .+ ||+|.+|.+.....
T Consensus 23 sll~~~~P~~d~ll~~~-i~l~~~~tlm~a~g~~a~~~~~~~~~~~~~-dil~VeG~V~~~~~ 83 (264)
T 1yqw_A 23 AAIRTIKPYIDALILDT-ISLDYQETIMAAAGEAAEAALHQALEGKDG-YYLVVEGGLPTIDG 83 (264)
T ss_dssp HHTTCBTTBHHHHHHHT-CEEEEETTTCSCCHHHHHHHHHHHHTCTTC-EEEEEESBEECGGG
T ss_pred HHHHcCCCCHHHHHhcc-eEEEEecchhhhchhhHHHHHHHHhccCCC-eEEEEeCCcccCCC
Confidence 45677788888776555 556555554332 2344555666554 25 99999999987653
No 44
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=53.52 E-value=11 Score=36.84 Aligned_cols=77 Identities=12% Similarity=0.115 Sum_probs=51.4
Q ss_pred ecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc
Q 005887 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 268 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~ 268 (671)
+++||.+.+.+.|+-+.| -.++..+|+..|++|+++|.-- .++.|.+++++ .++|+|..||..
T Consensus 91 ~~~~vll~~v~gd~HdiG-------------~~iv~~~l~~~G~~Vi~LG~~v-p~e~iv~~~~~---~~~d~v~l~~S~ 153 (215)
T 3ezx_A 91 EAGLAITFVAEGDIHDIG-------------HRLVTTMLGANGFQIVDLGVDV-LNENVVEEAAK---HKGEKVLLVGSA 153 (215)
T ss_dssp -CCEEEEEECTTCCCCHH-------------HHHHHHHHHHTSCEEEECCSSC-CHHHHHHHHHH---TTTSCEEEEEEC
T ss_pred CCCeEEEEeCCCChhHHH-------------HHHHHHHHHHCCCeEEEcCCCC-CHHHHHHHHHH---cCCCEEEEEchh
Confidence 467888877777766544 4588999999999999999722 25566666554 358999995544
Q ss_pred ccCC-ccchhhhhcc
Q 005887 269 SMGD-KDFVKPLLQK 282 (671)
Q Consensus 269 s~G~-~D~~~~~l~~ 282 (671)
..+. .+.+++.++.
T Consensus 154 l~~~~~~~~~~~i~~ 168 (215)
T 3ezx_A 154 LMTTSMLGQKDLMDR 168 (215)
T ss_dssp SSHHHHTHHHHHHHH
T ss_pred cccCcHHHHHHHHHH
Confidence 4442 3345555444
No 45
>3k94_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.10A {Geobacillus thermodenitrificans}
Probab=52.37 E-value=12 Score=36.88 Aligned_cols=65 Identities=20% Similarity=0.085 Sum_probs=49.0
Q ss_pred ccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCcccCCccchhhhhcc
Q 005887 216 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQK 282 (671)
Q Consensus 216 ~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s~G~~D~~~~~l~~ 282 (671)
.||-++-..+.+++.|.++..+..-+| ..+++.+|+.+++++++-|++.|++| |+-|++-.-+.-
T Consensus 51 ~DSi~~~~~~~~~~~~~~i~~~p~eKD-~TD~e~Al~~a~~~g~~~I~i~Ga~G-GR~DH~lani~l 115 (223)
T 3k94_A 51 FDSLPAEDVVKLQQAFPDLDVWPAEKD-KTDMEIALDWAVEQTARCIRLFGATG-GRLDHLFGNVEL 115 (223)
T ss_dssp GGGSCHHHHHHHHHHCTTCCEECCBTT-BCHHHHHHHHHHTTCCSEEEEESCSS-SSHHHHHHHHHH
T ss_pred cccCCHHHHHHHHhcCCeEEECCCcCC-CCHHHHHHHHHHHcCCCEEEEEcCCC-CchhHHHHHHHH
Confidence 466677777888888888766654444 45688888888877799999999997 689998665543
No 46
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=50.55 E-value=24 Score=33.01 Aligned_cols=45 Identities=13% Similarity=0.003 Sum_probs=29.9
Q ss_pred cchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCcc
Q 005887 217 DSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 269 (671)
Q Consensus 217 dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s 269 (671)
++|...+..+|++.|+++..... .++.+.+.+ . ++|.||.+||.+
T Consensus 10 ~~~~~~~~~~l~~~G~~~~~~~~-~~~~~~~~~------~-~~dglil~Gg~~ 54 (189)
T 1wl8_A 10 GQYVHRIWRTLRYLGVETKIIPN-TTPLEEIKA------M-NPKGIIFSGGPS 54 (189)
T ss_dssp CTTHHHHHHHHHHTTCEEEEEET-TCCHHHHHH------T-CCSEEEECCCSC
T ss_pred CchHHHHHHHHHHCCCeEEEEEC-CCChHHhcc------c-CCCEEEECCCCC
Confidence 45778899999999988764432 122222221 2 489999999963
No 47
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=50.36 E-value=13 Score=36.46 Aligned_cols=64 Identities=22% Similarity=0.127 Sum_probs=48.4
Q ss_pred ccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCcccCCccchhhhhc
Q 005887 216 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQ 281 (671)
Q Consensus 216 ~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s~G~~D~~~~~l~ 281 (671)
.||-++-..+.+++.|.++..+..-+| ..+++.+|+.+++++++-|++.|++| |+-|++-.-+.
T Consensus 52 fDSi~~~~~~~~~~~~~~i~~~p~eKD-~TD~e~Al~~a~~~g~~~I~i~Ga~G-gR~DH~lani~ 115 (222)
T 3lm8_A 52 FDSITEQERRRIEKAAPALHVYQAEKD-QTDLDLALDWALEKQPDIIQIFGITG-GRADHFLGNIQ 115 (222)
T ss_dssp STTSCHHHHHHHHHHCTTCEEECCCSS-SCHHHHHHHHHHHHCCSEEEEESCCC-SCHHHHHHHHH
T ss_pred cccCCHHHHHHHHhcCCeEEEeCCCCC-CCHHHHHHHHHHHcCCCEEEEEcCCC-CchhHHHHHHH
Confidence 467777777888888888776654444 45678888888776789999999997 68899865544
No 48
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=49.59 E-value=7.9 Score=35.60 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=37.6
Q ss_pred HHHHHHHHhccceeeeecccC----CHHHHHHHhhhhhcccccEEEecCCcccCC
Q 005887 222 MLLAAAMQQHCKLIDLGIVRD----DEEELEKTLDNAFSAGIDILLTSGGVSMGD 272 (671)
Q Consensus 222 ~L~a~l~~~G~~v~~~~iv~D----d~~~i~~~l~~a~~~~~DiVIttGG~s~G~ 272 (671)
.|.+.|++.|++|.+++.-.+ |.-.+...+.+++. .+|.-|...|||.|-
T Consensus 24 ~i~~~L~~~G~eV~D~G~~~~~~~~dYpd~a~~va~~V~-~~d~GIliCGTGiG~ 77 (148)
T 4em8_A 24 FLSAYLRDLGCEVFDCGCDPKEHSVDYPDYVHDVVREVS-DTSFGVLICGTGIGM 77 (148)
T ss_dssp HHHHHHHHTTCEEEECCCCTTCSCCCGGGGTHHHHTTCB-TTBEEEEEESSSHHH
T ss_pred HHHHHHHHCCCEEEEeCCCCCCCCCChHHHHHHHHHHHH-HhCeEEEEccCcHHH
Confidence 567788889999999987532 35566666766666 589888888888873
No 49
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=45.64 E-value=17 Score=33.94 Aligned_cols=51 Identities=18% Similarity=0.154 Sum_probs=37.4
Q ss_pred HHHHHHHHhccceeeeecccC----CHHHHHHHhhhhhc-ccccEEEecCCcccCC
Q 005887 222 MLLAAAMQQHCKLIDLGIVRD----DEEELEKTLDNAFS-AGIDILLTSGGVSMGD 272 (671)
Q Consensus 222 ~L~a~l~~~G~~v~~~~iv~D----d~~~i~~~l~~a~~-~~~DiVIttGG~s~G~ 272 (671)
.|.+.|++.|++|.+++.-.+ |.-.+...+.+++. ..+|.-|+..|||.|-
T Consensus 20 ~i~~~L~~~G~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~ 75 (162)
T 2vvp_A 20 RIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVADPGSLGIVLGGSGNGE 75 (162)
T ss_dssp HHHHHHHHTTCEEEECSCCSCCTTCCHHHHHHHHHHHHHHSTTCEEEEEESSSHHH
T ss_pred HHHHHHHHCCCEEEEeCCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEeCCcHHH
Confidence 477888899999999996432 45566666665543 2479999999998874
No 50
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=44.37 E-value=22 Score=36.61 Aligned_cols=73 Identities=15% Similarity=0.163 Sum_probs=40.5
Q ss_pred ecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc
Q 005887 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 268 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~ 268 (671)
++|+|+|.+.-.... .. .+.-+..+...+..+|++.|+++..+..- ++.+.+.+.+ + ++|-||.+||-
T Consensus 29 ~~P~IGI~~~~~~~~--~~----~~~~~~~~~~~~~~~l~~~G~~~~vv~~~-~~~~~i~~~l----~-~~dglil~GG~ 96 (315)
T 1l9x_A 29 KKPIIGILMQKCRNK--VM----KNYGRYYIAASYVKYLESAGARVVPVRLD-LTEKDYEILF----K-SINGILFPGGS 96 (315)
T ss_dssp CCCEEEEECEECCSH--HH----HTTCSEEEEHHHHHHHHHTTCEEEEECSS-CCHHHHHHHH----H-HSSEEEECCCC
T ss_pred CCCEEEEECCccccc--cc----ccCcceehHHHHHHHHHHCCCEEEEEecC-CCHHHHHHHH----h-cCCEEEEeCCC
Confidence 479999987522110 00 01112233444667788889887654332 2345554433 3 38999999984
Q ss_pred -ccCCc
Q 005887 269 -SMGDK 273 (671)
Q Consensus 269 -s~G~~ 273 (671)
++.+.
T Consensus 97 ~~v~p~ 102 (315)
T 1l9x_A 97 VDLRRS 102 (315)
T ss_dssp CCTTTC
T ss_pred cccChh
Confidence 55443
No 51
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=43.98 E-value=33 Score=33.19 Aligned_cols=54 Identities=11% Similarity=0.204 Sum_probs=34.6
Q ss_pred ceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCcc
Q 005887 191 PTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 269 (671)
Q Consensus 191 prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s 269 (671)
++|+||-.|+ +|...+...|++.|+++..+..- .+.+.+.. . ++|.||.+||-+
T Consensus 25 ~~I~iiD~g~-----------------~~~~~i~~~l~~~G~~~~vv~~~-~~~~~l~~------~-~~dglil~Gg~~ 78 (218)
T 2vpi_A 25 GAVVILDAGA-----------------QYGKVIDRRVRELFVQSEIFPLE-TPAFAIKE------Q-GFRAIIISGGPN 78 (218)
T ss_dssp TCEEEEECST-----------------TTTHHHHHHHHHTTCCEEEECTT-CCHHHHHH------H-TCSEEEEEC---
T ss_pred CeEEEEECCC-----------------chHHHHHHHHHHCCCEEEEEECC-CChHHHhh------c-CCCEEEECCCCc
Confidence 5788887764 34567888899999887655432 23444432 2 489999999854
No 52
>3ayx_B Membrane-bound hydrogenase small subunit; oxidoreductase, membrane-bound NI-Fe hydrogenase; 1.18A {Hydrogenovibrio marinus} PDB: 3ayy_B 3ayz_B
Probab=43.27 E-value=16 Score=37.17 Aligned_cols=59 Identities=15% Similarity=0.107 Sum_probs=35.8
Q ss_pred ccccchhHHHHHHHHHhccceeeeecccCC-HHHHHHHhhhhhc--ccccEEEecCCcccCCc
Q 005887 214 QIRDSNRAMLLAAAMQQHCKLIDLGIVRDD-EEELEKTLDNAFS--AGIDILLTSGGVSMGDK 273 (671)
Q Consensus 214 ~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd-~~~i~~~l~~a~~--~~~DiVIttGG~s~G~~ 273 (671)
.+.|++.+.+..+|.++ +++.+...+-+. -+...+.++++++ +++||+|.+|.+.....
T Consensus 29 slL~~~~P~~~d~l~~~-i~l~~~~tl~~a~g~~a~~~l~~~~~~~~~~dilvVeG~V~~~~~ 90 (283)
T 3ayx_B 29 SFIRSAHPLAKDVVLSM-ISLDYDDTLMAASGHAAEAILDEIKEKYKGNYILAVEGNPPLNQD 90 (283)
T ss_dssp HHHTCSSSCHHHHHHHT-EEEEEETTTCSCCHHHHHHHHHHHHHHTTTTEEEEEESBCBCSGG
T ss_pred HHHhcCCCcHHHHHhhc-eeEEEecchhhhcchhHHHHHHHHhccCCCCeEEEEeCCCccCCC
Confidence 45677778887765554 445454444332 2334444544442 25899999999988764
No 53
>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus}
Probab=43.22 E-value=15 Score=35.64 Aligned_cols=64 Identities=22% Similarity=0.159 Sum_probs=45.5
Q ss_pred ccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCcccCCccchhhhhcc
Q 005887 216 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQK 282 (671)
Q Consensus 216 ~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s~G~~D~~~~~l~~ 282 (671)
.||-++-..+.+++.| ++..+..-+ |..+++.+|+.+++++++-|++.|++| |+-|++-.-+.-
T Consensus 49 ~DSi~~~~~~~~~~~~-~i~~~p~eK-D~TD~e~Al~~a~~~~~~~I~i~Ga~G-gR~DH~lani~l 112 (212)
T 3l8m_A 49 FDSISDSERNFIQQQI-EINPYNSEK-DDTDLALGIDQAVKRGYRNIDVYGATG-GRLDHFMGALQI 112 (212)
T ss_dssp CCCSCHHHHHHHHHHT-BCCCCC----CBCHHHHHHHHHHHTTCCEEEEESCSS-SCHHHHHHHHHH
T ss_pred cccCCHHHHHHHhcCC-cEEEECCcC-CCCHHHHHHHHHHHCCCCEEEEEcCCC-CchhHHHHHHHH
Confidence 4676777777888887 665554433 445678888888777899999999998 589998655543
No 54
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=41.90 E-value=23 Score=32.75 Aligned_cols=51 Identities=14% Similarity=0.117 Sum_probs=36.9
Q ss_pred HHHHHHHHhccceeeeeccc---CCHHHHHHHhhhhhc-ccccEEEecCCcccCC
Q 005887 222 MLLAAAMQQHCKLIDLGIVR---DDEEELEKTLDNAFS-AGIDILLTSGGVSMGD 272 (671)
Q Consensus 222 ~L~a~l~~~G~~v~~~~iv~---Dd~~~i~~~l~~a~~-~~~DiVIttGG~s~G~ 272 (671)
.|.+.|++.|++|.+++.-. .|.-.+...+.+++. ..+|.-|+..|||.|-
T Consensus 29 ~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~ 83 (155)
T 1o1x_A 29 KVKNYLLGKGIEVEDHGTYSEESVDYPDYAKKVVQSILSNEADFGILLCGTGLGM 83 (155)
T ss_dssp HHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSCSEEEEEESSSHHH
T ss_pred HHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCcHHH
Confidence 57778888999999999743 245556666655543 2489999999998874
No 55
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=41.47 E-value=36 Score=33.63 Aligned_cols=40 Identities=25% Similarity=0.179 Sum_probs=25.4
Q ss_pred HHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCcc
Q 005887 223 LLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 269 (671)
Q Consensus 223 L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s 269 (671)
....+++.|+.++.+....|. + +.+. ++ .+|-||.+||-+
T Consensus 33 ~~~~l~~aG~~pv~lp~~~~~-~-~~~~----l~-~~DGlil~GG~~ 72 (254)
T 3fij_A 33 YVDAIQKVGGFPIALPIDDPS-T-AVQA----IS-LVDGLLLTGGQD 72 (254)
T ss_dssp HHHHHHHHTCEEEEECCCCGG-G-HHHH----HH-TCSEEEECCCSC
T ss_pred HHHHHHHCCCEEEEEeCCCch-H-HHHH----Hh-hCCEEEECCCCC
Confidence 344456789888766544332 2 4443 33 489999999965
No 56
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=41.07 E-value=23 Score=32.57 Aligned_cols=51 Identities=18% Similarity=0.205 Sum_probs=37.5
Q ss_pred HHHHHHHHhccceeeeeccc---CCHHHHHHHhhhhhc-ccccEEEecCCcccCC
Q 005887 222 MLLAAAMQQHCKLIDLGIVR---DDEEELEKTLDNAFS-AGIDILLTSGGVSMGD 272 (671)
Q Consensus 222 ~L~a~l~~~G~~v~~~~iv~---Dd~~~i~~~l~~a~~-~~~DiVIttGG~s~G~ 272 (671)
.|.+.|++.|++|.+++.-. .|.-.+...+.+++. ..+|.-|+..|||.|-
T Consensus 18 ~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~ 72 (149)
T 2vvr_A 18 EIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVDGGILICGTGVGI 72 (149)
T ss_dssp HHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHHH
T ss_pred HHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEeCCcHHH
Confidence 48889999999999998733 245556666655543 2479999999998873
No 57
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=40.65 E-value=23 Score=39.86 Aligned_cols=77 Identities=12% Similarity=0.215 Sum_probs=54.1
Q ss_pred ecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc
Q 005887 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 268 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~ 268 (671)
++++|.+.+.+.|+-+.| -.++..+|+..|++|+++|.- =.++.|.+++++. ++|+|..|+-.
T Consensus 97 ~~~kVLlatv~GD~HdiG-------------~~iva~~L~~~G~eVi~LG~~-vP~e~iv~aa~~~---~~diVgLS~l~ 159 (579)
T 3bul_A 97 TNGKMVIATVKGDVHDIG-------------KNIVGVVLQCNNYEIVDLGVM-VPAEKILRTAKEV---NADLIGLSGLI 159 (579)
T ss_dssp CSCEEEEEEBTTCCCCHH-------------HHHHHHHHHTTTCEEEECCSS-BCHHHHHHHHHHH---TCSEEEEECCS
T ss_pred CCCeEEEEECCCCCchHH-------------HHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHc---CCCEEEEEecC
Confidence 477888877777766544 458889999999999999874 2356666666653 58999999865
Q ss_pred ccCCccchhhhhccc
Q 005887 269 SMGDKDFVKPLLQKK 283 (671)
Q Consensus 269 s~G~~D~~~~~l~~~ 283 (671)
.. ..+.+++.++++
T Consensus 160 t~-~~~~m~~~i~~L 173 (579)
T 3bul_A 160 TP-SLDEMVNVAKEM 173 (579)
T ss_dssp TH-HHHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHH
Confidence 33 345556555544
No 58
>3rgw_S Membrane-bound hydrogenase (NIFE) small subunit H; [NIFE] hydrogenase, high-resolution knallgasbacteria, proteobacteria; 1.50A {Ralstonia eutropha}
Probab=39.93 E-value=22 Score=37.08 Aligned_cols=58 Identities=14% Similarity=0.143 Sum_probs=37.8
Q ss_pred ccccchhHHHHHHHHHhccceeeeecccCCH-HHHHHHhhhhhc--ccccEEEecCCcccCC
Q 005887 214 QIRDSNRAMLLAAAMQQHCKLIDLGIVRDDE-EELEKTLDNAFS--AGIDILLTSGGVSMGD 272 (671)
Q Consensus 214 ~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~-~~i~~~l~~a~~--~~~DiVIttGG~s~G~ 272 (671)
.+.|+..+.+..++.. .+++.+...+-+.. +.-.+.|+++++ +++||+|.+|++....
T Consensus 23 SlL~~~~P~l~~ll~~-~I~L~yhptlm~~~G~~a~~~l~~~~~~~~~~dILlVEGsV~~~~ 83 (339)
T 3rgw_S 23 SFIRSAHPLAKDVVLS-MISLDYDDTLMAAAGHQAEAILEEIMTKYKGNYILAVEGNPPLNQ 83 (339)
T ss_dssp HHTTCBTTBHHHHHHH-TEEEEEETTTCSCCHHHHHHHHHHHHHHTTTCSEEEEESBCBCSG
T ss_pred HHHcCCCCCHHHHHhC-CeeEEecchhhhhhhHHHHHHHHHHHhccCCCcEEEEeeeccCCC
Confidence 4567778888777655 46777777665543 333344444432 3589999999998765
No 59
>2ppw_A Conserved domain protein; the putative RPIB, PSI-2, protein initiative, MCSG, structural genomics, midwest center for S genomics; HET: MSE; 2.01A {Streptococcus pneumoniae}
Probab=39.69 E-value=24 Score=34.47 Aligned_cols=52 Identities=15% Similarity=0.184 Sum_probs=39.1
Q ss_pred HHHHHHHHHhccceeeeeccc------CCHHHHHHHhhhhhc-ccccEEEecCCcccCC
Q 005887 221 AMLLAAAMQQHCKLIDLGIVR------DDEEELEKTLDNAFS-AGIDILLTSGGVSMGD 272 (671)
Q Consensus 221 ~~L~a~l~~~G~~v~~~~iv~------Dd~~~i~~~l~~a~~-~~~DiVIttGG~s~G~ 272 (671)
..|.+.|++.|++|.++|.-. .|.-.+...+.+++. ..+|.-|+..|||.|-
T Consensus 23 ~~i~~~L~~~G~eV~D~G~~s~~d~~s~DYPd~a~~vA~~V~~g~~d~GIliCGTGiG~ 81 (216)
T 2ppw_A 23 DSLKEATDKKGYQLFNYGMRGEEGESQLTYVQNGLMAAILLNTKAVDFVVTGCGTGVGA 81 (216)
T ss_dssp HHHHHHHHHHTCEEEECSCCSCTTCCCCCHHHHHHHHHHHHHTTSCSEEEEEESSSHHH
T ss_pred HHHHHHHHHCCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHcCCCCeEEEEcCCcHHH
Confidence 378889999999999998752 246666666666553 2489999999999874
No 60
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=39.65 E-value=27 Score=40.26 Aligned_cols=76 Identities=16% Similarity=0.175 Sum_probs=51.2
Q ss_pred ecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc
Q 005887 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 268 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~ 268 (671)
++|||.+...|.+.-+.| .-++..+|+..|++|++.+.-. .++.+.++..+ .++|+|..|+=.
T Consensus 595 ~r~kVvlatvg~D~HdiG-------------~~iVa~~l~~~GfeVi~lG~~v-~~eeiv~aA~e---~~adiVglSsl~ 657 (727)
T 1req_A 595 RRPRILLAKMGQDGHDRG-------------QKVIATAYADLGFDVDVGPLFQ-TPEETARQAVE---ADVHVVGVSSLA 657 (727)
T ss_dssp SCCEEEEECBTTCCCCHH-------------HHHHHHHHHHHTCEEEECCTTB-CHHHHHHHHHH---TTCSEEEEEECS
T ss_pred CCCEEEEEeCCcchhHHH-------------HHHHHHHHHhCCeEEEeCCCCC-CHHHHHHHHHH---cCCCEEEEeeec
Confidence 789998888887654433 4588899999999999987633 35555544443 369999998843
Q ss_pred ccCCccchhhhhcc
Q 005887 269 SMGDKDFVKPLLQK 282 (671)
Q Consensus 269 s~G~~D~~~~~l~~ 282 (671)
+ +.-+.++++++.
T Consensus 658 ~-~~~~~~~~vi~~ 670 (727)
T 1req_A 658 G-GHLTLVPALRKE 670 (727)
T ss_dssp S-CHHHHHHHHHHH
T ss_pred H-hHHHHHHHHHHH
Confidence 2 223445555544
No 61
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=39.60 E-value=37 Score=31.99 Aligned_cols=46 Identities=15% Similarity=-0.013 Sum_probs=28.9
Q ss_pred cchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCcc
Q 005887 217 DSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 269 (671)
Q Consensus 217 dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s 269 (671)
++....+..+|++.|+++..+..-..+.+.+ .. .++|.||.+||.+
T Consensus 11 ~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~----~~---~~~dglil~gG~~ 56 (195)
T 1qdl_B 11 DSFVYNIAQIVGELGSYPIVIRNDEISIKGI----ER---IDPDRLIISPGPG 56 (195)
T ss_dssp CSSHHHHHHHHHHTTCEEEEEETTTSCHHHH----HH---HCCSEEEECCCSS
T ss_pred CchHHHHHHHHHhCCCEEEEEeCCCCCHHHH----hh---CCCCEEEECCCCC
Confidence 4556788999999998876544211122222 21 1489999999854
No 62
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=39.50 E-value=27 Score=40.43 Aligned_cols=77 Identities=14% Similarity=0.164 Sum_probs=51.8
Q ss_pred ecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc
Q 005887 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 268 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~ 268 (671)
++|||.|-..|.+.-+.| .-++..+|+..|++|++.+.-. .++++.++..+ .++|+|..|+=.
T Consensus 603 ~r~kVvlatvg~D~HdiG-------------~~iVa~~l~~~GfeVi~lG~~v-~~eeiv~aA~e---~~adiVglSsl~ 665 (762)
T 2xij_A 603 RRPRLLVAKMGQDGHDRG-------------AKVIATGFADLGFDVDIGPLFQ-TPREVAQQAVD---ADVHAVGVSTLA 665 (762)
T ss_dssp SCCEEEEECCSSCCCCHH-------------HHHHHHHHHHTTCEEEECCTTC-CHHHHHHHHHH---TTCSEEEEEECS
T ss_pred CCCEEEEEecCcchhhHH-------------HHHHHHHHHhCCeEEeeCCCCC-CHHHHHHHHHH---cCCCEEEEeeec
Confidence 789998888887654433 4588899999999999987633 35555544443 369999998643
Q ss_pred ccCCccchhhhhccc
Q 005887 269 SMGDKDFVKPLLQKK 283 (671)
Q Consensus 269 s~G~~D~~~~~l~~~ 283 (671)
+ +-.+.++++++.+
T Consensus 666 ~-~~~~~~~~vi~~L 679 (762)
T 2xij_A 666 A-GHKTLVPELIKEL 679 (762)
T ss_dssp S-CHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHH
Confidence 2 2334555555443
No 63
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=38.36 E-value=15 Score=37.03 Aligned_cols=77 Identities=18% Similarity=0.171 Sum_probs=50.6
Q ss_pred ecceEEEeecCCcccccccccccccccccchhHHHHHH--------HHHh-ccceeeeecccCCHHHHHHHhhhhhcccc
Q 005887 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAA--------AMQQ-HCKLIDLGIVRDDEEELEKTLDNAFSAGI 259 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~--------l~~~-G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~ 259 (671)
+++||.+-+.+.|.-+.|. -++..+ |+.. |++|+++|.-- .++.|.++.++ .++
T Consensus 119 ~~~~Vvlatv~gD~HdiG~-------------~iv~~~k~~~~~~~L~~~~G~eVi~LG~~v-p~e~iv~aa~e---~~~ 181 (262)
T 1xrs_B 119 RKIVVVGASTGTDAHTVGI-------------DAIMNMKGYAGHYGLERYEMIDAYNLGSQV-ANEDFIKKAVE---LEA 181 (262)
T ss_dssp SCEEEEEEEBTTCCCCHHH-------------HHHHSTTCBTTBCCGGGCTTEEEEECCSSB-CHHHHHHHHHH---TTC
T ss_pred CCCEEEEEeCCCCCchHHH-------------HHHhhhhcccchHHHHhcCCcEEEECCCCC-CHHHHHHHHHH---cCC
Confidence 6788877777877765443 366666 8899 99999999722 25555555554 359
Q ss_pred cEEEecCCcccCC--ccchhhhhcc
Q 005887 260 DILLTSGGVSMGD--KDFVKPLLQK 282 (671)
Q Consensus 260 DiVIttGG~s~G~--~D~~~~~l~~ 282 (671)
|+|..|.-+..++ .+.+++.++.
T Consensus 182 d~VglS~l~t~~~~~~~~~~~~i~~ 206 (262)
T 1xrs_B 182 DVLLVSQTVTQKNVHIQNMTHLIEL 206 (262)
T ss_dssp SEEEEECCCCTTSHHHHHHHHHHHH
T ss_pred CEEEEEeecCCccchHHHHHHHHHH
Confidence 9999998765432 3344444443
No 64
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=37.23 E-value=21 Score=33.16 Aligned_cols=77 Identities=16% Similarity=0.084 Sum_probs=49.5
Q ss_pred HHHHHHhccce--eeeecccCCHHHHHHHhhhhh-cccccEEEecCCc---ccCCccchhhhhcccceEEEecccccCCC
Q 005887 224 LAAAMQQHCKL--IDLGIVRDDEEELEKTLDNAF-SAGIDILLTSGGV---SMGDKDFVKPLLQKKGTIYFNKVCMKPGK 297 (671)
Q Consensus 224 ~a~l~~~G~~v--~~~~iv~Dd~~~i~~~l~~a~-~~~~DiVIttGG~---s~G~~D~~~~~l~~~g~i~f~~v~~~PGk 297 (671)
...|++.|+.. +..-.||--.|. --+.++++ ..++|.||+.|=+ +...+||+.....+- +-.+++.-|.
T Consensus 34 ~~~l~~~Gv~~~~i~v~~VPGafEi-P~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~~vs~G----l~~v~L~~~v 108 (157)
T 2obx_A 34 EAEMADIGGDRFAVDVFDVPGAYEI-PLHARTLAETGRYGAVLGTAFVVNGGIYRHEFVASAVIDG----MMNVQLSTGV 108 (157)
T ss_dssp HHHHHHHHTTSEEEEEEEESSGGGH-HHHHHHHHHHTCCSEEEEEEECCCCSSBCCHHHHHHHHHH----HHHHHHHHCC
T ss_pred HHHHHHcCCCccceEEEECCcHHHH-HHHHHHHHhcCCCCEEEEeeccccCCCcHHHHHHHHHHHH----HHHHHhhcCC
Confidence 34456678654 455567876653 22222222 1359999999988 233478888777652 4457777889
Q ss_pred cceeeEec
Q 005887 298 PLTFAEIN 305 (671)
Q Consensus 298 p~~~a~~~ 305 (671)
|+.||.+.
T Consensus 109 PV~~GVLT 116 (157)
T 2obx_A 109 PVLSAVLT 116 (157)
T ss_dssp CEEEEEEC
T ss_pred CEEEEecC
Confidence 99999774
No 65
>3a9s_A D-arabinose isomerase; rossmann fold, beta barrel, carbohydrate metabolism, cytoplasm, fucose metabolism, manganese, metal- binding; 1.60A {Geobacillus pallidus} PDB: 3a9r_A 3a9t_A*
Probab=36.98 E-value=46 Score=37.46 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=41.4
Q ss_pred ecceEEEeecCCcccccccccccccccccchhH-------HHHHHHHHh-------ccceeeeecccCCHHHHHHHhhhh
Q 005887 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRA-------MLLAAAMQQ-------HCKLIDLGIVRDDEEELEKTLDNA 254 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~-------~L~a~l~~~-------G~~v~~~~iv~Dd~~~i~~~l~~a 254 (671)
++|||+|++|+|.-. +.++++-.. .++.++.+. +++++..+-+=++.++.++..+..
T Consensus 10 ~~~kiGi~p~~dgr~---------~~~re~l~~~~~~~a~~~~~~l~~~l~~~~g~~vevV~~~~~I~~~~eA~~~ae~F 80 (595)
T 3a9s_A 10 NLPKIGIRPTIDGRR---------KGVRESLEETTMNMAKAVAKLLEENVFYYNGQPVECVIADTCIGGVKEAAEAAEKF 80 (595)
T ss_dssp BCCEEEEEEBCCCCT---------TTHHHHHHHHHHHHHHHHHHHHHHHCBCTTSCBCCEEECSSCBCSHHHHHHHHHHH
T ss_pred CCceEEEEecccccc---------ccchhchhHHHHHHHHHHHHHHHHHHhhccCCCeEEEECCCeeCCHHHHHHHHHHH
Confidence 679999999998742 233333322 233444443 567777774445566665555555
Q ss_pred hcccccEEEe
Q 005887 255 FSAGIDILLT 264 (671)
Q Consensus 255 ~~~~~DiVIt 264 (671)
.++++|++|+
T Consensus 81 ~~~~vd~ii~ 90 (595)
T 3a9s_A 81 AREGVGVSIT 90 (595)
T ss_dssp HHHTEEEEEE
T ss_pred HHcCCCEEEE
Confidence 5557899886
No 66
>3mel_A Thiamin pyrophosphokinase family protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium; HET: TPP; 2.79A {Enterococcus faecalis}
Probab=36.84 E-value=25 Score=34.46 Aligned_cols=65 Identities=17% Similarity=0.086 Sum_probs=45.4
Q ss_pred ccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhccccc-EEEecCCcccCCccchhhhhcc
Q 005887 216 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGID-ILLTSGGVSMGDKDFVKPLLQK 282 (671)
Q Consensus 216 ~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~D-iVIttGG~s~G~~D~~~~~l~~ 282 (671)
.||-++-..+.+++.|.++..+..-+ |..+++.+|+.+.+++++ -|++.|++| |+-|++-.-+.-
T Consensus 50 fDSi~~~~~~~~~~~~~~~~~~~~eK-D~TD~e~Al~~~~~~~~~~~I~i~Ga~G-gRlDH~lani~l 115 (222)
T 3mel_A 50 FDSLSREEYHFVQETTETLIQAPAEK-DDTDTQLALQEALQRFPQAEMTIIGATG-GRIDHLLANLWL 115 (222)
T ss_dssp CTTSCTTHHHHHHHHCSSEEECCSSC-SSCHHHHHHHHHHHHCTTSEEEEECCCS-SCHHHHHHHHTG
T ss_pred cccCCHHHHHHHHhcCCcEEECCccC-CCCHHHHHHHHHHHhCCCceEEEEccCC-CCHHHHHHHHHH
Confidence 35555556677888888776654443 445677888887766676 888899997 588987655543
No 67
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=36.31 E-value=37 Score=33.28 Aligned_cols=95 Identities=17% Similarity=0.161 Sum_probs=48.0
Q ss_pred eeccccccccceEEeccCcccccchhhhhhhcceeEEEEeecceEEEeecCCcccccccccccccccccchhHHHHHHHH
Q 005887 149 IRPVGYDIEKDAIILKSGERIGASEIGLLATAGIMMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAM 228 (671)
Q Consensus 149 ir~~Ged~~~G~~ll~~G~~l~p~~i~lLas~Gi~~v~V~~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~ 228 (671)
||++|-|+...+. -..+--.+|..+..+|..-|-+ +++.. .|+| +...+..++.
T Consensus 61 IRPR~GdF~Ys~~----E~~~M~~Di~~~~~~GadGvV~------G~Lt~-------------dg~i---D~~~~~~Li~ 114 (224)
T 2bdq_A 61 IRPRGGNFVYNDL----ELRIMEEDILRAVELESDALVL------GILTS-------------NNHI---DTEAIEQLLP 114 (224)
T ss_dssp CCSSSSCSCCCHH----HHHHHHHHHHHHHHTTCSEEEE------CCBCT-------------TSSB---CHHHHHHHHH
T ss_pred ECCCCCCCcCCHH----HHHHHHHHHHHHHHcCCCEEEE------eeECC-------------CCCc---CHHHHHHHHH
Confidence 5555555443321 1133446777888888765432 22221 1221 2345556655
Q ss_pred Hh-ccceeeeecccCCH--HHHHHHhhhhhcccccEEEecCCccc
Q 005887 229 QQ-HCKLIDLGIVRDDE--EELEKTLDNAFSAGIDILLTSGGVSM 270 (671)
Q Consensus 229 ~~-G~~v~~~~iv~Dd~--~~i~~~l~~a~~~~~DiVIttGG~s~ 270 (671)
.. |.+++...- =|.- ....++++.+.+-++|=|+|+||..-
T Consensus 115 ~a~~~~vTFHRA-FD~~~~~d~~~ale~L~~lGv~rILTSG~~~~ 158 (224)
T 2bdq_A 115 ATQGLPLVFHMA-FDVIPKSDQKKSIDQLVALGFTRILLHGSSNG 158 (224)
T ss_dssp HHTTCCEEECGG-GGGSCTTTHHHHHHHHHHTTCCEEEECSCSSC
T ss_pred HhCCCeEEEECc-hhccCCcCHHHHHHHHHHcCCCEEECCCCCCC
Confidence 43 555554432 2222 22334455555447888999998753
No 68
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=35.35 E-value=35 Score=31.34 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=36.3
Q ss_pred HHHHHHHHhccceeeeeccc---CCHHHHHHHhhhhhc-ccccEEEecCCcccCC
Q 005887 222 MLLAAAMQQHCKLIDLGIVR---DDEEELEKTLDNAFS-AGIDILLTSGGVSMGD 272 (671)
Q Consensus 222 ~L~a~l~~~G~~v~~~~iv~---Dd~~~i~~~l~~a~~-~~~DiVIttGG~s~G~ 272 (671)
.|.+.|++.|++|.+++.-. .|...+...+.+++. ..+|.-|...|||.|-
T Consensus 17 ~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~ 71 (149)
T 3he8_A 17 EIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGTGLGI 71 (149)
T ss_dssp HHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHHH
T ss_pred HHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHH
Confidence 56778888999999998753 244556666655543 2478888888888763
No 69
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=35.30 E-value=34 Score=32.04 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=37.1
Q ss_pred HHHHHHHHhccceeeeeccc---CCHHHHHHHhhhhhc-ccccEEEecCCcccCC
Q 005887 222 MLLAAAMQQHCKLIDLGIVR---DDEEELEKTLDNAFS-AGIDILLTSGGVSMGD 272 (671)
Q Consensus 222 ~L~a~l~~~G~~v~~~~iv~---Dd~~~i~~~l~~a~~-~~~DiVIttGG~s~G~ 272 (671)
.|.+.|++.|++|++++.-. .|...+...+.+++. ..+|.-|+..|||.|-
T Consensus 37 ~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~ 91 (169)
T 3ph3_A 37 EIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGTGLGI 91 (169)
T ss_dssp HHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHHH
T ss_pred HHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHH
Confidence 67788889999999998753 345556666655553 2479888888888873
No 70
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=34.98 E-value=76 Score=31.77 Aligned_cols=71 Identities=15% Similarity=0.101 Sum_probs=45.4
Q ss_pred ceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeec--c-------cCCHHHHHHHhhhhhcccccE
Q 005887 191 PTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGI--V-------RDDEEELEKTLDNAFSAGIDI 261 (671)
Q Consensus 191 prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~i--v-------~Dd~~~i~~~l~~a~~~~~Di 261 (671)
.||+|+++-...+ ..++...+++.|+++....- . ..+++.+.++++++.+.++|.
T Consensus 147 ~rvgvltp~~~~~----------------~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gada 210 (273)
T 2xed_A 147 QRVALVTPYMRPL----------------AEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDA 210 (273)
T ss_dssp CEEEEEECSCHHH----------------HHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSE
T ss_pred CeEEEEcCChhhh----------------HHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCE
Confidence 3788887643322 34777888889998754332 1 225667788888776567998
Q ss_pred EEecCCcccCCccchh
Q 005887 262 LLTSGGVSMGDKDFVK 277 (671)
Q Consensus 262 VIttGG~s~G~~D~~~ 277 (671)
||..-.|.+...++..
T Consensus 211 IvLg~CT~l~~~~~~~ 226 (273)
T 2xed_A 211 LVISCAVQMPSLPLVE 226 (273)
T ss_dssp EEEESSSSSCCTTHHH
T ss_pred EEEcCCCCcchHHhHH
Confidence 8876456555544433
No 71
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=34.32 E-value=52 Score=30.83 Aligned_cols=87 Identities=9% Similarity=0.098 Sum_probs=52.3
Q ss_pred ecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecc--cCCHHHHHHHhhhhhcccccEEEecC
Q 005887 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIV--RDDEEELEKTLDNAFSAGIDILLTSG 266 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv--~Dd~~~i~~~l~~a~~~~~DiVIttG 266 (671)
-+|+|+||.-|+-=.+. ..-....|+++|++ .+.+++ --.++.+.+..+++.++++++||...
T Consensus 10 ~~~~V~IimGS~SD~~v--------------~~~a~~~L~~~Gi~-~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~A 74 (170)
T 1xmp_A 10 MKSLVGVIMGSTSDWET--------------MKYACDILDELNIP-YEKKVVSAHRTPDYMFEYAETARERGLKVIIAGA 74 (170)
T ss_dssp -CCSEEEEESSGGGHHH--------------HHHHHHHHHHTTCC-EEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred CCCcEEEEECcHHHHHH--------------HHHHHHHHHHcCCC-EEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 47999999876421111 12345567889987 345554 24567777777776656789999877
Q ss_pred CcccCCccchhhhhcccceEEEeccccc
Q 005887 267 GVSMGDKDFVKPLLQKKGTIYFNKVCMK 294 (671)
Q Consensus 267 G~s~G~~D~~~~~l~~~g~i~f~~v~~~ 294 (671)
|.+. ..+-++..+-.+-.=+|.+.
T Consensus 75 G~aa----~LpgvvA~~t~~PVIgVP~~ 98 (170)
T 1xmp_A 75 GGAA----HLPGMVAAKTNLPVIGVPVQ 98 (170)
T ss_dssp ESSC----CHHHHHHTTCCSCEEEEEEC
T ss_pred Cchh----hhHHHHHhccCCCEEEeeCC
Confidence 7644 67777766533223344443
No 72
>3ono_A Ribose/galactose isomerase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.75A {Vibrio parahaemolyticus}
Probab=34.31 E-value=32 Score=33.45 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=36.9
Q ss_pred HHHHHHHHhccceeeeec--c---cCCHHHHHHHhhhhhc-ccccEEEecCCcccCC
Q 005887 222 MLLAAAMQQHCKLIDLGI--V---RDDEEELEKTLDNAFS-AGIDILLTSGGVSMGD 272 (671)
Q Consensus 222 ~L~a~l~~~G~~v~~~~i--v---~Dd~~~i~~~l~~a~~-~~~DiVIttGG~s~G~ 272 (671)
.|.+.|++.|++|.++|. - +.|.-.+...+.+++. ..+|.-|+..|||.|-
T Consensus 24 ~l~~~L~~~G~eV~D~G~~~~~~~~~dYpd~a~~vA~~V~~g~~d~GIliCGTGiG~ 80 (214)
T 3ono_A 24 ELNSVAGGLGHDVFNVGMTDENDHHLTYIHLGIMASILLNSKAVDFVVTGCGTGQGA 80 (214)
T ss_dssp HHHHHHHHTTCEEEECSCSSTTSSCCCHHHHHHHHHHHHHTTSCSEEEEEESSSHHH
T ss_pred HHHHHHHHCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHH
Confidence 577888999999999994 2 2245556666655543 2489999999998873
No 73
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=34.18 E-value=67 Score=31.55 Aligned_cols=49 Identities=16% Similarity=-0.006 Sum_probs=37.3
Q ss_pred hHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc
Q 005887 220 RAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 268 (671)
Q Consensus 220 ~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~ 268 (671)
...+...+++.|+++.......+|.+...+.++.++++++|-||+.+..
T Consensus 23 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 71 (305)
T 3g1w_A 23 LKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAID 71 (305)
T ss_dssp HHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSS
T ss_pred HHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 3456677788899987655566788888888888877679999987754
No 74
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=33.60 E-value=69 Score=33.94 Aligned_cols=91 Identities=16% Similarity=0.173 Sum_probs=50.2
Q ss_pred ecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHH--------------------
Q 005887 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELE-------------------- 248 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~-------------------- 248 (671)
+.-+|+||-.|. -+......++.+|++|+-+..-++..+.+.
T Consensus 183 ~~~kV~ViG~G~------------------iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya 244 (381)
T 3p2y_A 183 KPASALVLGVGV------------------AGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYA 244 (381)
T ss_dssp CCCEEEEESCSH------------------HHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC----------
T ss_pred CCCEEEEECchH------------------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccch
Confidence 456788887772 134555666666766655555444333332
Q ss_pred ------------HHhhhhhcccccEEEecCCccc--CCccchhhhhcccc-eEEEecccccCCCc
Q 005887 249 ------------KTLDNAFSAGIDILLTSGGVSM--GDKDFVKPLLQKKG-TIYFNKVCMKPGKP 298 (671)
Q Consensus 249 ------------~~l~~a~~~~~DiVIttGG~s~--G~~D~~~~~l~~~g-~i~f~~v~~~PGkp 298 (671)
+.+.+++. ++|+||+|=..-. .+.=++.+.++.+- .-++-.+++.+|..
T Consensus 245 ~~~~~~~~~~~~~~l~e~l~-~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~ 308 (381)
T 3p2y_A 245 RELSEAERAQQQQALEDAIT-KFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGGN 308 (381)
T ss_dssp ---CHHHHHHHHHHHHHHHT-TCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCS
T ss_pred hhhhHHHHhhhHHHHHHHHh-cCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCCCc
Confidence 34566666 5999998732211 12224567777663 22333466666653
No 75
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=33.39 E-value=31 Score=32.24 Aligned_cols=51 Identities=24% Similarity=0.288 Sum_probs=32.5
Q ss_pred HHHHHHHHhccceeeeecccC---CHHHHHHHhhhhhc-ccccEEEecCCcccCC
Q 005887 222 MLLAAAMQQHCKLIDLGIVRD---DEEELEKTLDNAFS-AGIDILLTSGGVSMGD 272 (671)
Q Consensus 222 ~L~a~l~~~G~~v~~~~iv~D---d~~~i~~~l~~a~~-~~~DiVIttGG~s~G~ 272 (671)
.|.+.|++.|++|++++.-.+ |.-.+...+.+++. ..+|.-|...|||.|-
T Consensus 38 ~i~~~L~~~G~eV~D~G~~~~~~~dYPd~a~~va~~V~~g~~d~GIliCGTGiG~ 92 (166)
T 3s5p_A 38 FLQQRASAHGYEVMDLGTESDASVDYPDFAKIGCEAVTSGRADCCILVCGTGIGI 92 (166)
T ss_dssp HHHHHHHHTTCEEEEEEC--------CHHHHHHHHHHHTTSCSEEEEEESSSHHH
T ss_pred HHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCcEEEEEcCCcHHH
Confidence 566777889999999997542 23344455544442 2488888888888863
No 76
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=33.02 E-value=88 Score=30.66 Aligned_cols=88 Identities=14% Similarity=0.044 Sum_probs=55.0
Q ss_pred chhhhhhhcceeEEEEeecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecc--cC-------
Q 005887 172 SEIGLLATAGIMMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIV--RD------- 242 (671)
Q Consensus 172 ~~i~lLas~Gi~~v~V~~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv--~D------- 242 (671)
..+..|...|. .||+|++|-..- -...+.+.|++.|+++....-. .|
T Consensus 107 A~~~al~~~g~--------~rvglltpy~~~----------------~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~ 162 (240)
T 3ixl_A 107 AVLNGLRALGV--------RRVALATAYIDD----------------VNERLAAFLAEESLVPTGCRSLGITGVEAMARV 162 (240)
T ss_dssp HHHHHHHHTTC--------SEEEEEESSCHH----------------HHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTC
T ss_pred HHHHHHHHhCC--------CEEEEEeCChHH----------------HHHHHHHHHHHCCCEEeccccCCCCCcchhhcC
Confidence 34445666664 378888773221 1346678888899987654432 22
Q ss_pred CHHHHHHHhhh-h-hcccccEEEecCCcccCCccchhhhhcccc
Q 005887 243 DEEELEKTLDN-A-FSAGIDILLTSGGVSMGDKDFVKPLLQKKG 284 (671)
Q Consensus 243 d~~~i~~~l~~-a-~~~~~DiVIttGG~s~G~~D~~~~~l~~~g 284 (671)
+++.+.+.+++ + ...++|.||.. .|.....+.+.+.-+++|
T Consensus 163 ~~~~~~~~~~~~l~~~~~adaivL~-CT~l~~l~~i~~le~~lg 205 (240)
T 3ixl_A 163 DTATLVDLCVRAFEAAPDSDGILLS-SGGLLTLDAIPEVERRLG 205 (240)
T ss_dssp CHHHHHHHHHHHHHTSTTCSEEEEE-CTTSCCTTHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhhcCCCCCEEEEe-CCCCchhhhHHHHHHHhC
Confidence 46678888888 4 44579988876 577766665444444455
No 77
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A*
Probab=32.67 E-value=28 Score=34.68 Aligned_cols=64 Identities=23% Similarity=0.342 Sum_probs=45.7
Q ss_pred ccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcc------cccEEEecCCcccCCccchhhhhcc
Q 005887 216 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSA------GIDILLTSGGVSMGDKDFVKPLLQK 282 (671)
Q Consensus 216 ~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~------~~DiVIttGG~s~G~~D~~~~~l~~ 282 (671)
.||-++-..+.+++.|.+++.. . .-|..+++.+|+.++++ +++-|+..|++| |+-|++-.-+.-
T Consensus 76 ~DSi~~~~~~~~~~~~~~i~~~-p-eKD~TD~ekAl~~~~~~~~~~~~~~~~I~ilGa~G-GR~DH~Lani~l 145 (247)
T 3s4y_A 76 FDSIRPEVREYYATKGCELIST-P-DQDHTDFTKCLKMLQKKIEEKDLKVDVIVTLGGLA-GRFDQIMASVNT 145 (247)
T ss_dssp CSSSCHHHHHHHHHTTCEEEEC-C-CTTSCHHHHHHHHHHHHHHHTTCCCSEEEEECCSS-SSHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHhcCCEEEEC-C-CCCcCHHHHHHHHHHHhhhhccCCCCEEEEEecCC-CchhHHHHHHHH
Confidence 4777777888888888877652 2 33445677788777642 478899999997 689998655543
No 78
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A
Probab=32.40 E-value=49 Score=30.48 Aligned_cols=81 Identities=14% Similarity=0.325 Sum_probs=49.1
Q ss_pred ecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc
Q 005887 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 268 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~ 268 (671)
..|||+++...=|.-.... .+++.=++..-+..++ ..+.+.|++.+++..+.++++||+.+|+
T Consensus 20 ~nakI~ll~~~Le~~k~e~----~~~v~i~~~~~~~~~~-------------~~E~~~l~~~v~kI~~~g~nVVl~~k~I 82 (159)
T 1ass_A 20 KNAKIALIDSALEIKKTEI----EAKVQISDPSKIQDFL-------------NQETNTFKQMVEKIKKSGANVVLCQKGI 82 (159)
T ss_dssp EEEEEEEESSCBSCCHHHH----HHHHHTSCGGGHHHHH-------------HHHHHHHHHHHHHHHHTTCSEEEESSCB
T ss_pred CCccEEEEecCcCCccccc----ceeEEECCHHHHHHHH-------------HHHHHHHHHHhhhhhhCCCeEEEECCcc
Confidence 5799999998755321111 1122111222222222 3345567777777777789999999988
Q ss_pred ccCCccchhhhhcccceEEEec
Q 005887 269 SMGDKDFVKPLLQKKGTIYFNK 290 (671)
Q Consensus 269 s~G~~D~~~~~l~~~g~i~f~~ 290 (671)
.|+....|.+.|=+.+++
T Consensus 83 ----~d~a~~~l~k~gI~~v~~ 100 (159)
T 1ass_A 83 ----DDVAQHYLAKEGIYAVRR 100 (159)
T ss_dssp ----CHHHHHHHHHTTCEEECS
T ss_pred ----CHHHHHHHHHCCCEEEcc
Confidence 678888888776444443
No 79
>3c5y_A Ribose/galactose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.81A {Novosphingobium aromaticivorans}
Probab=32.33 E-value=28 Score=34.23 Aligned_cols=51 Identities=18% Similarity=0.155 Sum_probs=37.0
Q ss_pred HHHHHHHHhccceeeeeccc------CCHHHHHHHhhhhhc-ccccEEEecCCcccCC
Q 005887 222 MLLAAAMQQHCKLIDLGIVR------DDEEELEKTLDNAFS-AGIDILLTSGGVSMGD 272 (671)
Q Consensus 222 ~L~a~l~~~G~~v~~~~iv~------Dd~~~i~~~l~~a~~-~~~DiVIttGG~s~G~ 272 (671)
.|.+.|++.|++|.++|.-. .|.-.+...+.+++. ..+|.-|+..|||.|-
T Consensus 40 ~i~~~L~~~G~eV~D~G~~s~~d~~svDYPd~a~~vA~~V~~g~~d~GIliCGTGiG~ 97 (231)
T 3c5y_A 40 ALTTVAEPLGHKVFNYGMYTAEDKASLTYVMNGLLAGILLNSGAADFVVTGCGTGMGS 97 (231)
T ss_dssp HHHHHHGGGTCEEEECCCCSTTCSSCCCHHHHHHHHHHHHHHTSCSEEEEEESSSHHH
T ss_pred HHHHHHHHCCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHcCCCCeEEEEcCCcHHH
Confidence 56777788999999998752 245566666665543 2489999999998874
No 80
>3cq9_A Uncharacterized protein LP_1622; Q88WK7_lacpl, transferase, thiamine pyrophosphokinase, NESG, LPR114, structural genomics, PSI-2; 2.20A {Lactobacillus plantarum WCFS1}
Probab=32.00 E-value=22 Score=34.96 Aligned_cols=65 Identities=15% Similarity=0.065 Sum_probs=39.6
Q ss_pred ccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhccccc-EEEecCCcccCCccchhhhhcc
Q 005887 216 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGID-ILLTSGGVSMGDKDFVKPLLQK 282 (671)
Q Consensus 216 ~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~D-iVIttGG~s~G~~D~~~~~l~~ 282 (671)
.||-++-..+.+++.|.++.....-+|+ .+...+|+.+.+++++ .|++.|++| |+-|++-.-+.-
T Consensus 51 fDSi~~e~~~~~~~~~~~~~~~~~~KD~-TD~e~Al~~a~~~~~~~~I~i~Ga~G-gR~DH~laNi~l 116 (227)
T 3cq9_A 51 FDSIDAAELQTVKDALVGAIVVKPDQDH-TDTQLAIKSIFEQLQPDEVHLYGATG-GRLDHLLANMWL 116 (227)
T ss_dssp C---------CHHHHHHTSEEECCCSSS-CHHHHHHHHHHHHTCCSEEEEESCSS-SCHHHHHHHHSG
T ss_pred CcCCCHHHHHHHHhcCceEEECCCCCCC-CHHHHHHHHHHHhCCCceEEEEcCCC-CchhHHHHHHHH
Confidence 3555556666777788776666554444 5577777777765566 899999998 788998665543
No 81
>3uqy_S Hydrogenase-1 small chain; membrane-bound hydrogenase, oxidoreductase; HET: LMT; 1.47A {Escherichia coli} PDB: 3usc_S* 3use_S*
Probab=31.92 E-value=23 Score=36.85 Aligned_cols=58 Identities=14% Similarity=0.187 Sum_probs=38.3
Q ss_pred ccccchhHHHHHHHHHhccceeeeecccCCH-HHHHHHhhhhhc--ccccEEEecCCcccCC
Q 005887 214 QIRDSNRAMLLAAAMQQHCKLIDLGIVRDDE-EELEKTLDNAFS--AGIDILLTSGGVSMGD 272 (671)
Q Consensus 214 ~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~-~~i~~~l~~a~~--~~~DiVIttGG~s~G~ 272 (671)
.+.|+..+.+..++.+ .+++.+...+-+.. +..++.++++++ +++||+|.+|.+....
T Consensus 23 SlL~~~~P~l~~lll~-~I~L~yhptlm~~~G~~ae~~l~~~~~~~~~~dILlVeGsV~~~~ 83 (335)
T 3uqy_S 23 SFIRSAHPLAKDVILS-LISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGE 83 (335)
T ss_dssp HHHTCBTTBHHHHHHH-TEEEEEETTTCSCCHHHHHHHHHHHHHHTTTTEEEEEESBCBCGG
T ss_pred HHHCCCCCCHHHHHhc-CceEeechhhhhhhhHHHHHHHHHHHhcCCCCeEEEEeccCCCCC
Confidence 4567778888887766 57777777665543 233344444332 3589999999998654
No 82
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=30.95 E-value=9.8 Score=36.83 Aligned_cols=64 Identities=23% Similarity=0.316 Sum_probs=42.5
Q ss_pred EEEEEEEEeecccccCCCCCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCC
Q 005887 471 EFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTG 548 (671)
Q Consensus 471 ~~~v~IIt~GdEl~~G~~~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG 548 (671)
.+++++|.++...- -.|.|...+.+.|+.. |+++....+-..+++.+.+.|++ +|.|+..||-.
T Consensus 27 ~~~i~~Ip~As~~~---~~~~~~~s~~~a~~~l-----G~~v~~~~i~~~~~~~~~~~l~~------ad~I~l~GG~~ 90 (206)
T 3l4e_A 27 GKTVTFIPTASTVE---EVTFYVEAGKKALESL-----GLLVEELDIATESLGEITTKLRK------NDFIYVTGGNT 90 (206)
T ss_dssp TCEEEEECGGGGGC---SCCHHHHHHHHHHHHT-----TCEEEECCTTTSCHHHHHHHHHH------SSEEEECCSCH
T ss_pred CCEEEEECCCCCCC---CHHHHHHHHHHHHHHc-----CCeEEEEEecCCChHHHHHHHHh------CCEEEECCCCH
Confidence 47899998765421 1234444555666666 99877665555677777776664 69999988744
No 83
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=29.72 E-value=63 Score=30.18 Aligned_cols=57 Identities=14% Similarity=-0.032 Sum_probs=31.0
Q ss_pred cchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCC-cccCCccchh
Q 005887 217 DSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG-VSMGDKDFVK 277 (671)
Q Consensus 217 dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG-~s~G~~D~~~ 277 (671)
||-...+..+|++.|+++..+..- .+.+.+.+++.... ..+ +|.+|| .++.+.++..
T Consensus 10 ~s~~~~i~~~l~~~G~~~~v~~~~-~~~~~i~~~l~~~~--~~~-iil~gGpg~~~~~~~~~ 67 (192)
T 1i1q_B 10 DSFTWNLADQLRTNGHNVVIYRNH-IPAQTLIDRLATMK--NPV-LMLSPGPGVPSEAGCMP 67 (192)
T ss_dssp CSSHHHHHHHHHHTTCEEEEEETT-SCSHHHHHHHTTCS--SEE-EEECCCSSCGGGSTTHH
T ss_pred ccHHHHHHHHHHHCCCeEEEEECC-CCHHHHHHHhhhcc--CCe-EEECCCCcCchhCchHH
Confidence 445678889999999886543321 22355655554321 134 555555 4444444433
No 84
>3myr_A Hydrogenase (NIFE) small subunit HYDA; [NIFE] hydrogenase, photosynthetic P sulfur bacterium, iron-sulfur cluster, NI-A state; HET: SF4; 2.10A {Allochromatium vinosum} SCOP: e.19.1.0
Probab=29.40 E-value=32 Score=34.72 Aligned_cols=120 Identities=13% Similarity=0.076 Sum_probs=62.2
Q ss_pred CCCCCceEEEecCCccccCCceEEEeccccCC-hhhHHHHHhhhcC-CccceEEEeecCCCCCC--CC--------CChH
Q 005887 490 DRSGPRAVSVVNSSSEKLGGAKVVATDVVPDD-VGKIKEVLRRWSD-IDKMDLILTLGGTGFTP--RD--------VTPE 557 (671)
Q Consensus 490 D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd-~~~I~~~l~~~~~-~~~~DlVIttGGtG~~~--~D--------~T~e 557 (671)
|+..+.+.+++.+ .+++.+...+.+. -++..+.|+++++ ..+.|++|.+|.+. ++ +| -..|
T Consensus 23 ~~~~p~l~~ll~~------~I~l~yhptl~~~~G~~a~~~l~~~~~~~~~~dilvVEGsV~-~p~~~~g~~~~gg~~~~e 95 (269)
T 3myr_A 23 RAHAPTLEDLILD------FISLDYHHTLQAASGEAAEAARLQAMDENRGQYLVIVDGSIP-GPDANPGFSTVAGHSNYS 95 (269)
T ss_dssp HCCSSCHHHHHHH------TCEEEECTTTCSSCHHHHHHHHHHHHHHTTTTCEEEEESBEE-CTTSCGGGBEETTEEHHH
T ss_pred CCCCCCHHHHHhC------CeeEEechhhhhhhhHHHHHHHHHHHhcCCCCeEEEEeccCC-CCcCCCccceeCChHHHH
Confidence 3344555444444 4788888888665 2233333433332 13689999999995 22 22 2244
Q ss_pred HHHHhhhhcCCCeeeeeecccc-------c-ccchhhhcccccccccceEEEeCCCChhhHHHHHHHHHHHH
Q 005887 558 ATKELIERETPGLLYVMMQESL-------K-VTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPAL 621 (671)
Q Consensus 558 al~~~~~~~l~gi~e~~~~~~~-------~-~~pg~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~ilp~L 621 (671)
.+.++..+ + .++...|. . ..++-....+.--++.+++++.+||.|-.-...++.++-+|
T Consensus 96 ~l~e~~~~--~---k~VIA~G~CA~~GGi~a~~~n~~~~~gv~~~i~~~vdi~IPGCPp~Pe~i~~~l~~ll 162 (269)
T 3myr_A 96 ILMETVEH--A---AAVIAVGTCAAFGGLPQARPNPTGAMSVMDLVRDKPVINVPGCPPIPMVITGVIAHYL 162 (269)
T ss_dssp HHHHHHTT--C---SEEEEEHHHHHHCHHHHSTTCTTCEECHHHHCCSSCEEEECSSSCCHHHHHHHHHHHH
T ss_pred HHHHHccc--C---CEEEEeccccccCCccCCCCCccccCCHHHhCCCCCEEEecCCCCCHHHHHHHHHHHH
Confidence 55554432 1 11221111 0 11110000011112345789999999999888888877655
No 85
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=28.93 E-value=1e+02 Score=29.49 Aligned_cols=70 Identities=3% Similarity=-0.070 Sum_probs=44.1
Q ss_pred ceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecc--c-------CCHHHHHHHhhhhhcc--cc
Q 005887 191 PTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIV--R-------DDEEELEKTLDNAFSA--GI 259 (671)
Q Consensus 191 prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv--~-------Dd~~~i~~~l~~a~~~--~~ 259 (671)
.||+|+++....+ ..+....+++.|+++...... . .+++.+.+.++++.+. ++
T Consensus 109 ~rvgvlt~~~~~~----------------~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ga 172 (223)
T 2dgd_A 109 RKLWIGTPYIKER----------------TLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKA 172 (223)
T ss_dssp CEEEEEESSCHHH----------------HHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTS
T ss_pred CeEEEEeCCchHH----------------HHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCC
Confidence 4788887643221 346777888889887544321 1 2456677888777655 79
Q ss_pred cEEEecCCcccCCccchh
Q 005887 260 DILLTSGGVSMGDKDFVK 277 (671)
Q Consensus 260 DiVIttGG~s~G~~D~~~ 277 (671)
|.||.. .|.....++..
T Consensus 173 daIvLg-CT~l~~~~~~~ 189 (223)
T 2dgd_A 173 DAVYIA-CTALSTYEAVQ 189 (223)
T ss_dssp SEEEEC-CTTSCCTTHHH
T ss_pred CEEEEe-CCcccHHHHHH
Confidence 988865 56555544433
No 86
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=28.40 E-value=28 Score=29.79 Aligned_cols=31 Identities=26% Similarity=0.259 Sum_probs=26.8
Q ss_pred ccccHHHHHHHHHHhhhcCCCcchhHHHHHh
Q 005887 15 KMISAEEALQKVLSVAQRLPPVTVPLYEALG 45 (671)
Q Consensus 15 ~~is~~eA~~~i~~~~~~~~~e~v~l~~A~G 45 (671)
...+|++|++.+.+.+..+....+||++++-
T Consensus 28 ~~~sFEeal~eLEeIV~~LE~gel~LEesl~ 58 (100)
T 1vp7_A 28 LPQDFETALAELESLVSAMENGTLPLEQSLS 58 (100)
T ss_dssp BCCSHHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 4689999999999999998888888888764
No 87
>3uqy_S Hydrogenase-1 small chain; membrane-bound hydrogenase, oxidoreductase; HET: LMT; 1.47A {Escherichia coli} PDB: 3usc_S* 3use_S*
Probab=28.34 E-value=1.1e+02 Score=31.76 Aligned_cols=118 Identities=15% Similarity=0.111 Sum_probs=63.5
Q ss_pred CCCCCceEEEecCCccccCCceEEEeccccCCh-hhHHHHHhhhcC-CccceEEEeecCCCCCCCC--------CChHHH
Q 005887 490 DRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDV-GKIKEVLRRWSD-IDKMDLILTLGGTGFTPRD--------VTPEAT 559 (671)
Q Consensus 490 D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~-~~I~~~l~~~~~-~~~~DlVIttGGtG~~~~D--------~T~eal 559 (671)
|+..+.+.++|.+ .+++.+...+.+.. ++..+.+++.++ ..+.|++|.+|.+....+. -..+.+
T Consensus 26 ~~~~P~l~~lll~------~I~L~yhptlm~~~G~~ae~~l~~~~~~~~~~dILlVeGsV~~~~~G~y~~~gg~~~l~~l 99 (335)
T 3uqy_S 26 RSAHPLAKDVILS------LISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKL 99 (335)
T ss_dssp TCBTTBHHHHHHH------TEEEEEETTTCSCCHHHHHHHHHHHHHHTTTTEEEEEESBCBCGGGGTTBEETTEEHHHHH
T ss_pred CCCCCCHHHHHhc------CceEeechhhhhhhhHHHHHHHHHHHhcCCCCeEEEEeccCCCCCCcceeccCCcHHHHHH
Confidence 4445655554444 47888888887653 223333333321 1469999999999753221 113444
Q ss_pred HHhhhhcCCCeeeeeeccc-------cc-ccchhhhccccccc---ccceEEEeCCCChhhHHHHHHHHHHHH
Q 005887 560 KELIERETPGLLYVMMQES-------LK-VTPFAMLSRSAAGI---RGSTLIINMPGNPNAVAECMEALLPAL 621 (671)
Q Consensus 560 ~~~~~~~l~gi~e~~~~~~-------~~-~~pg~~lsr~~~G~---~~~~~i~~LPG~P~a~~~~~~~ilp~L 621 (671)
.++..+ ..++...| +. ..|+ + -...|+ +.+++++++||.|-.-...++.|+.+|
T Consensus 100 ~e~~~~-----ak~VIAvGsCA~~GGi~a~~~n-p--t~~~gv~~vi~~~~di~IPGCPP~Pe~i~~~l~~ll 164 (335)
T 3uqy_S 100 KRAAAG-----ASAIIAWGTCASWGCVQAARPN-P--TQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMV 164 (335)
T ss_dssp HHHHHH-----EEEEEEEHHHHHTCHHHHSTTC-T--TCBCCGGGTCCSSCEEEECSSSCCHHHHHHHHHHHH
T ss_pred HHHccC-----CCEEEEeccccccCCccCCCCC-c--ccCcCHHHhCCCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 444332 12222221 11 1111 0 012222 335579999999999888888877654
No 88
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=28.22 E-value=12 Score=34.50 Aligned_cols=91 Identities=13% Similarity=0.115 Sum_probs=55.7
Q ss_pred CceEEEecccc---CChhhHHHHHhhhcCCccceEEEeecCCCCCCCCCChHHHHHhhhhcCCCeeeeeecccccccch-
Q 005887 509 GAKVVATDVVP---DDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPGLLYVMMQESLKVTPF- 584 (671)
Q Consensus 509 G~~v~~~~iv~---Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~D~T~eal~~~~~~~l~gi~e~~~~~~~~~~pg- 584 (671)
|++|..++.-. .|.-.+...+.++....++|.-|+..|||.|- .= ..-+.||+.-.+- ..|.
T Consensus 27 G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~--------si-aANKv~GIRAal~-----~d~~s 92 (149)
T 2vvr_A 27 GVEVIDKGTWSSERTDYPHYASQVALAVAGGEVDGGILICGTGVGI--------SI-AANKFAGIRAVVC-----SEPYS 92 (149)
T ss_dssp TCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHHH--------HH-HHHTSTTCCEEEC-----SSHHH
T ss_pred CCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEeCCcHHH--------HH-HHhcCCCeEEEEe-----CCHHH
Confidence 99999997633 34666666666665446799999999999662 22 2224566543211 1221
Q ss_pred hhhcccccccccceEEEeCCCChhhHHHHHHHH
Q 005887 585 AMLSRSAAGIRGSTLIINMPGNPNAVAECMEAL 617 (671)
Q Consensus 585 ~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~i 617 (671)
+. .+-..|+.-|++|++--.+...+.+.+
T Consensus 93 A~----~ar~hNnaNVl~lG~rvig~ela~~iv 121 (149)
T 2vvr_A 93 AQ----LSRQNNDTNVLAFGSRVVGLELAKMIV 121 (149)
T ss_dssp HH----HHHHHHCCCEEEEETTTBCHHHHHHHH
T ss_pred HH----HHHHhCCCcEEEECccccCHHHHHHHH
Confidence 11 222368899999999655555555443
No 89
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=28.14 E-value=87 Score=29.28 Aligned_cols=44 Identities=16% Similarity=0.360 Sum_probs=33.0
Q ss_pred CHHHHHHHhhhhhcccccEEEecCCcccCCccchhhhhcccceEEEec
Q 005887 243 DEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKGTIYFNK 290 (671)
Q Consensus 243 d~~~i~~~l~~a~~~~~DiVIttGG~s~G~~D~~~~~l~~~g~i~f~~ 290 (671)
+.+.+++.+++..+.++++||+.+|+ .|+....+.+.|=+.+++
T Consensus 63 E~~~l~~~v~kI~~~g~nVVl~~k~I----~d~a~~~l~k~gI~~vr~ 106 (178)
T 1gml_A 63 EEEYIHQLCEDIIQLKPDVVITEKGI----SDLAQHYLMRANVTAIRR 106 (178)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEESSCB----CHHHHHHHHHTTCEEECC
T ss_pred HHHHHHHHHHHHhhcCCcEEEECCcc----cHHHHHHHHHCCCEEEec
Confidence 45667777777777789999999988 688888888776444443
No 90
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=27.90 E-value=1.2e+02 Score=29.91 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=35.8
Q ss_pred hHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc
Q 005887 220 RAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 268 (671)
Q Consensus 220 ~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~ 268 (671)
...+.+.+++.|+++..... .+|.+...+.++.++.+++|-||+.+..
T Consensus 21 ~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 68 (313)
T 3m9w_A 21 RDIFVKKAESLGAKVFVQSA-NGNEETQMSQIENMINRGVDVLVIIPYN 68 (313)
T ss_dssp HHHHHHHHHHTSCEEEEEEC-TTCHHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred HHHHHHHHHHcCCEEEEECC-CCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 34567778889998876544 6677777778888777679999988754
No 91
>3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi} SCOP: c.121.1.0 PDB: 3k7s_A* 3k7o_A* 3k8c_A* 3m1p_A
Probab=27.57 E-value=44 Score=31.57 Aligned_cols=52 Identities=10% Similarity=0.134 Sum_probs=37.5
Q ss_pred HHHHHHHHH--hccceeeeeccc---CCHHHHHHHhhhhhc-ccccEEEecCCcccCC
Q 005887 221 AMLLAAAMQ--QHCKLIDLGIVR---DDEEELEKTLDNAFS-AGIDILLTSGGVSMGD 272 (671)
Q Consensus 221 ~~L~a~l~~--~G~~v~~~~iv~---Dd~~~i~~~l~~a~~-~~~DiVIttGG~s~G~ 272 (671)
..|.+.|++ .|++|++++.-. .|...+...+.+++. ..+|.-|+..|||.|-
T Consensus 38 ~~i~~~L~~~~~G~eV~D~G~~s~~s~DYPd~a~~vA~~V~~g~~d~GIliCGTGiG~ 95 (179)
T 3k7p_A 38 ENLILYVKEAGDEFVPVYCGPKTAESVDYPDFASRVAEMVARKEVEFGVLAAGSGIGM 95 (179)
T ss_dssp HHHHHHHHHTCTTEEEEECSCSSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHHH
T ss_pred HHHHHHHHhcCCCCeEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEccCcHHH
Confidence 367788899 999999998754 245556666655543 2489888888888873
No 92
>2wpn_A Periplasmic [nifese] hydrogenase, small subunit; metal-binding, oxidoreductase, oxygen tolerance; HET: FSX SBY PSW; 2.04A {Desulfovibrio vulgaris}
Probab=27.50 E-value=58 Score=33.64 Aligned_cols=57 Identities=14% Similarity=0.033 Sum_probs=33.6
Q ss_pred ccccchhHHHHHHH-HHhccceeeeecccCC-HHHHHHHhhhhhc--ccccEEEecCCcccCC
Q 005887 214 QIRDSNRAMLLAAA-MQQHCKLIDLGIVRDD-EEELEKTLDNAFS--AGIDILLTSGGVSMGD 272 (671)
Q Consensus 214 ~i~dsN~~~L~a~l-~~~G~~v~~~~iv~Dd-~~~i~~~l~~a~~--~~~DiVIttGG~s~G~ 272 (671)
.+.|+..+.+..+| ...+ +.+...+-|. -+...+.|.++++ +++||+|.+|.+....
T Consensus 58 sll~~~~p~~d~ll~~~i~--l~~~~slm~~~g~~a~~~l~~~~~~~~~~DIliVEGsV~~~~ 118 (317)
T 2wpn_A 58 TLLNSVHPSIADVLLKVIS--LEFHPTVMAWEGEHAIEHMRKVAEKFKGKFFLVIEGSVPVEA 118 (317)
T ss_dssp HHHTCCCTTHHHHHHHTCE--EEECTTTCSCCHHHHHHHHHHHHHHTTTTEEEEEESBEECTG
T ss_pred HHHhcCCCCHHHHHhhcee--eEecCchhhhcchHHHHHHHHHhccCCCCeEEEEeCCcccCC
Confidence 34566667777777 4444 4444443222 2333344554443 3589999999998764
No 93
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=27.40 E-value=99 Score=29.58 Aligned_cols=49 Identities=16% Similarity=0.032 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhccceeeeec-ccCCHHHHHHHhhhhhccc-ccEEEecCCc
Q 005887 220 RAMLLAAAMQQHCKLIDLGI-VRDDEEELEKTLDNAFSAG-IDILLTSGGV 268 (671)
Q Consensus 220 ~~~L~a~l~~~G~~v~~~~i-v~Dd~~~i~~~l~~a~~~~-~DiVIttGG~ 268 (671)
..-+...+++.|+++..... ..+|.+...+.++.+++++ +|-||+.+-.
T Consensus 19 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~ 69 (276)
T 3ksm_A 19 YLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNS 69 (276)
T ss_dssp HHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSS
T ss_pred HHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 34566777788998775543 3467777778888887777 9999988753
No 94
>1yqw_A Periplasmic [NIFE] hydrogenase small subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 3cur_A 3cus_A 3h3x_A 1yrq_A 1frf_S
Probab=27.15 E-value=16 Score=36.89 Aligned_cols=119 Identities=15% Similarity=0.167 Sum_probs=62.0
Q ss_pred CCCCCCceEEEecCCccccCCceEEEeccccCCh-hhHHHHHhhhcCC-ccceEEEeecCCCCCCCC--------CChHH
Q 005887 489 PDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDV-GKIKEVLRRWSDI-DKMDLILTLGGTGFTPRD--------VTPEA 558 (671)
Q Consensus 489 ~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~-~~I~~~l~~~~~~-~~~DlVIttGGtG~~~~D--------~T~ea 558 (671)
.|...+.+.++|.+. +++.+..++-|.. ++..+.+++++.. .. |++|.+|.+....+- -..+.
T Consensus 25 l~~~~P~~d~ll~~~------i~l~~~~tlm~a~g~~a~~~~~~~~~~~~~-dil~VeG~V~~~~~g~~~~~~g~~~~~~ 97 (264)
T 1yqw_A 25 IRTIKPYIDALILDT------ISLDYQETIMAAAGEAAEAALHQALEGKDG-YYLVVEGGLPTIDGGQWGMVAGHPMIET 97 (264)
T ss_dssp TTCBTTBHHHHHHHT------CEEEEETTTCSCCHHHHHHHHHHHHTCTTC-EEEEEESBEECGGGGTTBEETTEEHHHH
T ss_pred HHcCCCCHHHHHhcc------eEEEEecchhhhchhhHHHHHHHHhccCCC-eEEEEeCCcccCCCccceeeCChHHHHH
Confidence 355556555443333 4566666664432 3444555555532 25 999999998765320 11333
Q ss_pred HHHhhhhcCCCeeeeeeccc-------cc-ccchhhhccccccccc--ceEEEeCCCChhhHHHHHHHHHHHHH
Q 005887 559 TKELIERETPGLLYVMMQES-------LK-VTPFAMLSRSAAGIRG--STLIINMPGNPNAVAECMEALLPALK 622 (671)
Q Consensus 559 l~~~~~~~l~gi~e~~~~~~-------~~-~~pg~~lsr~~~G~~~--~~~i~~LPG~P~a~~~~~~~ilp~L~ 622 (671)
+.++..+ + .++...| +. ..|+ + -...|+-. .++|+.+||.|-.-...++.|+.++.
T Consensus 98 ~~~~~~~--~---k~VIA~GsCA~~GGi~a~~~n-~--~~~~gv~~v~~~PVi~IPGCPP~Pe~i~~~l~~ll~ 163 (264)
T 1yqw_A 98 TKKAAAK--A---KGIICIGTCSAYGGVQKAKPN-P--SQAKGVSEALGVKTINIPGCPPNPINFVGAVVHVLT 163 (264)
T ss_dssp HHHHHHT--C---SCEEEESHHHHHCCGGGSTTC-T--TCEECHHHHHTSCCEEECSSSCCHHHHHHHHHHHHH
T ss_pred HHHHhcC--C---CEEEEeccccccCCccCCCCC-C--cccccccccCCCCEEEeeCCCCCHHHHHHHHHHHHh
Confidence 4443322 1 1111111 11 1111 0 01223322 56789999999998888888776554
No 95
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=26.73 E-value=60 Score=32.96 Aligned_cols=82 Identities=11% Similarity=0.142 Sum_probs=44.9
Q ss_pred ecceEEEeecCCc-----cccccccccccccc--ccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhc-cccc
Q 005887 189 RTPTIAVLSTGDE-----LVEPTTQCLDRGQI--RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFS-AGID 260 (671)
Q Consensus 189 ~~prV~iistGdE-----lv~~~~~~~~~G~i--~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~-~~~D 260 (671)
+++||+|+.+|+- |+.......-..+| .=||.+-+..+.+++|..+.....-.++.++..+.+.+.++ .+.|
T Consensus 89 ~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~D 168 (286)
T 3n0v_A 89 HRPKVVIMVSKADHCLNDLLYRQRIGQLGMDVVAVVSNHPDLEPLAHWHKIPYYHFALDPKDKPGQERKVLQVIEETGAE 168 (286)
T ss_dssp CCCEEEEEESSCCHHHHHHHHHHHTTSSCCEEEEEEESSSTTHHHHHHTTCCEEECCCBTTBHHHHHHHHHHHHHHHTCS
T ss_pred CCcEEEEEEeCCCCCHHHHHHHHHCCCCCcEEEEEEeCcHHHHHHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 4679999999863 22211100001222 23566666777888998876654434444333333333222 2589
Q ss_pred EEEecCCccc
Q 005887 261 ILLTSGGVSM 270 (671)
Q Consensus 261 iVIttGG~s~ 270 (671)
+||..|=+-.
T Consensus 169 livla~y~~i 178 (286)
T 3n0v_A 169 LVILARYMQV 178 (286)
T ss_dssp EEEESSCCSC
T ss_pred EEEecccccc
Confidence 9999985433
No 96
>3rgw_S Membrane-bound hydrogenase (NIFE) small subunit H; [NIFE] hydrogenase, high-resolution knallgasbacteria, proteobacteria; 1.50A {Ralstonia eutropha}
Probab=25.97 E-value=78 Score=32.98 Aligned_cols=138 Identities=14% Similarity=0.089 Sum_probs=70.9
Q ss_pred eEEEEEEEEe----ecccccCCCCCCCCCceEEEecCCccccCCceEEEeccccCCh-hhHHHHHhhhcC-CccceEEEe
Q 005887 470 TEFSVAILTV----SDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDV-GKIKEVLRRWSD-IDKMDLILT 543 (671)
Q Consensus 470 ~~~~v~IIt~----GdEl~~G~~~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~-~~I~~~l~~~~~-~~~~DlVIt 543 (671)
++++|.-+-. |+.+. ..|+..+.+.+++.+ .+++.+...+.+.. ++-.+.|+++++ ..+.|++|.
T Consensus 5 ~r~~ViWl~~~~CtGCt~S---lL~~~~P~l~~ll~~------~I~L~yhptlm~~~G~~a~~~l~~~~~~~~~~dILlV 75 (339)
T 3rgw_S 5 PRTPVLWLHGLECTCCSES---FIRSAHPLAKDVVLS------MISLDYDDTLMAAAGHQAEAILEEIMTKYKGNYILAV 75 (339)
T ss_dssp CCEEEEEEECBCCSHHHHH---HTTCBTTBHHHHHHH------TEEEEEETTTCSCCHHHHHHHHHHHHHHTTTCSEEEE
T ss_pred CCCcEEEEECCcCCchHHH---HHcCCCCCHHHHHhC------CeeEEecchhhhhhhHHHHHHHHHHHhccCCCcEEEE
Confidence 4566666642 33332 234555655554444 47888888887753 223333333321 146899999
Q ss_pred ecCCCCCCCCC--------ChHHHHHhhhhcCCCeeeeeecc-------ccc-ccchhhhcccccccccceEEEeCCCCh
Q 005887 544 LGGTGFTPRDV--------TPEATKELIERETPGLLYVMMQE-------SLK-VTPFAMLSRSAAGIRGSTLIINMPGNP 607 (671)
Q Consensus 544 tGGtG~~~~D~--------T~eal~~~~~~~l~gi~e~~~~~-------~~~-~~pg~~lsr~~~G~~~~~~i~~LPG~P 607 (671)
+|.+....+.+ ..+.+.++..+ + .++... |+. ..|+-....+.--++.+++++.+||.|
T Consensus 76 EGsV~~~~~g~y~~~gg~~~~e~l~e~~~~--~---k~VIAvGtCA~~GGi~a~~~n~~~~~gv~~~i~~~vdi~IPGCP 150 (339)
T 3rgw_S 76 EGNPPLNQDGMSCIIGGRPFIEQLKYVAKD--A---KAIISWGSCASWGCVQAAKPNPTQATPVHKVITDKPIIKVPGCP 150 (339)
T ss_dssp ESBCBCSGGGTTBEETTEEHHHHHHHHHTT--C---SEEEEEHHHHHTCTGGGSTTCTTCBCCGGGTCCSSCEEEECSSS
T ss_pred eeeccCCCCcceeccCChHHHHHHHHHccC--C---CEEEEeccccccCCcCCCCCCccccCCHHHhCCCCCEEEeCCCC
Confidence 99996543211 13334443332 1 111111 111 111100000111123457899999999
Q ss_pred hhHHHHHHHHHHHH
Q 005887 608 NAVAECMEALLPAL 621 (671)
Q Consensus 608 ~a~~~~~~~ilp~L 621 (671)
-.=...++.|+-+|
T Consensus 151 P~Pe~i~~~l~~ll 164 (339)
T 3rgw_S 151 PIAEVMTGVITYML 164 (339)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 98888888776554
No 97
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=25.89 E-value=56 Score=31.05 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=26.0
Q ss_pred HHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCccc
Q 005887 222 MLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSM 270 (671)
Q Consensus 222 ~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s~ 270 (671)
++...+.+++.++ .+.--+.+.-.+..++. ++++|+||+-||+.-
T Consensus 19 ~~~~i~~e~~~~i---~i~~~~l~~~v~~a~~~-~~~~dVIISRGgta~ 63 (196)
T 2q5c_A 19 LFPKLALEKNFIP---ITKTASLTRASKIAFGL-QDEVDAIISRGATSD 63 (196)
T ss_dssp HHHHHHHHHTCEE---EEEECCHHHHHHHHHHH-TTTCSEEEEEHHHHH
T ss_pred HHHHHHhhhCCce---EEEECCHHHHHHHHHHh-cCCCeEEEECChHHH
Confidence 5556666666543 23333344333333333 457999999998843
No 98
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=25.72 E-value=61 Score=33.02 Aligned_cols=80 Identities=16% Similarity=0.158 Sum_probs=44.0
Q ss_pred ecceEEEeecCCc-----cccccccccccccc--ccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhc-cccc
Q 005887 189 RTPTIAVLSTGDE-----LVEPTTQCLDRGQI--RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFS-AGID 260 (671)
Q Consensus 189 ~~prV~iistGdE-----lv~~~~~~~~~G~i--~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~-~~~D 260 (671)
+++||+|+.+|+- |........-+.+| .=||.+-+..+.+++|..+.....-.++..+..+.+.+.++ .++|
T Consensus 94 ~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~D 173 (292)
T 3lou_A 94 ARPKVLIMVSKLEHCLADLLFRWKMGELKMDIVGIVSNHPDFAPLAAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAE 173 (292)
T ss_dssp SCCEEEEEECSCCHHHHHHHHHHHHTSSCCEEEEEEESSSTTHHHHHHTTCCEEECCCCSSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCEEEEEEcCCCcCHHHHHHHHHcCCCCcEEEEEEeCcHHHHHHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHHhCCC
Confidence 4779999999863 22211100001122 23555666777888998876655434444433333333222 2589
Q ss_pred EEEecCCc
Q 005887 261 ILLTSGGV 268 (671)
Q Consensus 261 iVIttGG~ 268 (671)
+||..|=+
T Consensus 174 livla~y~ 181 (292)
T 3lou_A 174 LVILARYM 181 (292)
T ss_dssp EEEESSCC
T ss_pred EEEecCch
Confidence 99998844
No 99
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=25.48 E-value=96 Score=29.09 Aligned_cols=87 Identities=15% Similarity=0.153 Sum_probs=51.9
Q ss_pred ecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeeccc--CCHHHHHHHhhhhhcccccEEEecC
Q 005887 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVR--DDEEELEKTLDNAFSAGIDILLTSG 266 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~--Dd~~~i~~~l~~a~~~~~DiVIttG 266 (671)
..|+|+||.-++-=.+. ..-....|+++|++. +.+++. -.++.+.+..+++.++++++||..-
T Consensus 11 ~~P~V~IimGS~SD~~v--------------~~~a~~~l~~~gi~~-ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~A 75 (173)
T 4grd_A 11 SAPLVGVLMGSSSDWDV--------------MKHAVAILQEFGVPY-EAKVVSAHRMPDEMFDYAEKARERGLRAIIAGA 75 (173)
T ss_dssp SSCSEEEEESSGGGHHH--------------HHHHHHHHHHTTCCE-EEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEE
T ss_pred CCCeEEEEeCcHhHHHH--------------HHHHHHHHHHcCCCE-EEEEEccccCHHHHHHHHHHHHhcCCeEEEEec
Confidence 57899998765321100 122346678889763 344442 4567777777777666789888766
Q ss_pred CcccCCccchhhhhcccceEEEeccccc
Q 005887 267 GVSMGDKDFVKPLLQKKGTIYFNKVCMK 294 (671)
Q Consensus 267 G~s~G~~D~~~~~l~~~g~i~f~~v~~~ 294 (671)
|.+ -+.+-++..+-.+-.=+|.++
T Consensus 76 G~a----ahLpgvvA~~t~~PVIgVPv~ 99 (173)
T 4grd_A 76 GGA----AHLPGMLAAKTTVPVLGVPVA 99 (173)
T ss_dssp ESS----CCHHHHHHHHCCSCEEEEEEC
T ss_pred ccc----ccchhhheecCCCCEEEEEcC
Confidence 554 367777765433333345443
No 100
>3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus mutans}
Probab=24.78 E-value=59 Score=31.54 Aligned_cols=65 Identities=18% Similarity=0.174 Sum_probs=46.9
Q ss_pred ccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcc-cccEEEecCCcccCCccchhhhhcc
Q 005887 216 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSA-GIDILLTSGGVSMGDKDFVKPLLQK 282 (671)
Q Consensus 216 ~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~-~~DiVIttGG~s~G~~D~~~~~l~~ 282 (671)
.||-++-..+.+++.|.++..+..-+| ..+++.+|+.++++ +++-|++.|++| |+-|++-.-+.-
T Consensus 46 fDSi~~~~~~~~~~~~~~i~~~~~eKD-~TD~e~Al~~a~~~~~~~~I~i~Ga~G-GR~DH~lani~l 111 (218)
T 3ihk_A 46 FDSVSAEEFKQIKAKAKKLVMAPAEKN-DTDTELALKTIFDCFGRVEIIVFGAFG-GRIDHMLSNIFL 111 (218)
T ss_dssp CTTSCHHHHHHHHTTCSSEEECCSSCS-SCHHHHHHHHHHHHTSSCEEEEESCSS-SCHHHHHHHHTG
T ss_pred cccCCHHHHHHHHhcCCeEEECCCCCC-CCHHHHHHHHHHHhCCCCEEEEECCCC-CchhhHHHHHHH
Confidence 466677777888888887766655444 45678888888765 478888899997 488998665543
No 101
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=24.70 E-value=97 Score=28.78 Aligned_cols=87 Identities=11% Similarity=0.070 Sum_probs=52.0
Q ss_pred ecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecc--cCCHHHHHHHhhhhhcccccEEEecC
Q 005887 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIV--RDDEEELEKTLDNAFSAGIDILLTSG 266 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv--~Dd~~~i~~~l~~a~~~~~DiVIttG 266 (671)
.+|+|+||.-|+-=.+. ..-....|+++|++. +.+++ --.++.+.+..+++.++++++||...
T Consensus 2 ~~~~V~Iimgs~SD~~v--------------~~~a~~~l~~~gi~~-ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~A 66 (163)
T 3ors_A 2 NAMKVAVIMGSSSDWKI--------------MQESCNMLDYFEIPY-EKQVVSAHRTPKMMVQFASEARERGINIIIAGA 66 (163)
T ss_dssp -CCCEEEEESCGGGHHH--------------HHHHHHHHHHTTCCE-EEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred CCCeEEEEECcHHHHHH--------------HHHHHHHHHHcCCCE-EEEEECCcCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 46889888766421110 123345678889873 44444 24567777777777666789999877
Q ss_pred CcccCCccchhhhhcccceEEEeccccc
Q 005887 267 GVSMGDKDFVKPLLQKKGTIYFNKVCMK 294 (671)
Q Consensus 267 G~s~G~~D~~~~~l~~~g~i~f~~v~~~ 294 (671)
|.+. +.+-++..+-.+-.=++.++
T Consensus 67 G~aa----~LpgvvA~~t~~PVIgVP~~ 90 (163)
T 3ors_A 67 GGAA----HLPGMVASLTTLPVIGVPIE 90 (163)
T ss_dssp ESSC----CHHHHHHHHCSSCEEEEEEC
T ss_pred Cchh----hhHHHHHhccCCCEEEeeCC
Confidence 7644 67777765433333344443
No 102
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=24.56 E-value=13 Score=34.49 Aligned_cols=91 Identities=16% Similarity=0.149 Sum_probs=55.7
Q ss_pred CceEEEecccc---CChhhHHHHHhhhcCCccceEEEeecCCCCCCCCCChHHHHHhhhhcCCCeeeeeecccccccch-
Q 005887 509 GAKVVATDVVP---DDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPGLLYVMMQESLKVTPF- 584 (671)
Q Consensus 509 G~~v~~~~iv~---Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~D~T~eal~~~~~~~l~gi~e~~~~~~~~~~pg- 584 (671)
|++|..++.-. .|.-.+...+.++....++|.-|+..|||.|- + +..-+.||+...+- ..+.
T Consensus 38 G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~--------s-iaANKv~GIRAAl~-----~d~~s 103 (155)
T 1o1x_A 38 GIEVEDHGTYSEESVDYPDYAKKVVQSILSNEADFGILLCGTGLGM--------S-IAANRYRGIRAALC-----LFPDM 103 (155)
T ss_dssp TCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSCSEEEEEESSSHHH--------H-HHHTTSTTCCEEEC-----SSHHH
T ss_pred CCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCcHHH--------H-HHhhcCCCeEEEEe-----CCHHH
Confidence 99999998643 34566666666665446799999999999652 2 22234566543211 1121
Q ss_pred hhhcccccccccceEEEeCCCChhhHHHHHHHH
Q 005887 585 AMLSRSAAGIRGSTLIINMPGNPNAVAECMEAL 617 (671)
Q Consensus 585 ~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~i 617 (671)
+. .+-..|+.-|++|++--.+...+.+.+
T Consensus 104 A~----~ar~hNnANVL~lG~rvig~elA~~Iv 132 (155)
T 1o1x_A 104 AR----LARSHNNANILVLPGRLIGAELAFWIV 132 (155)
T ss_dssp HH----HHHHTTCCSEEEEETTTSCHHHHHHHH
T ss_pred HH----HHHHcCCCcEEEECCcccCHHHHHHHH
Confidence 11 222368899999999665555554433
No 103
>1cc1_S Hydrogenase (small subunit); NI-Fe-Se hydrogenase, oxidoreductase; 2.15A {Desulfomicrobium baculatum} SCOP: e.19.1.1
Probab=24.34 E-value=74 Score=32.29 Aligned_cols=59 Identities=12% Similarity=0.072 Sum_probs=33.9
Q ss_pred ccccchhHHHHHHHHHhccceeeeecccC-CHHHHHHHhhhhhc--ccccEEEecCCcccCCc
Q 005887 214 QIRDSNRAMLLAAAMQQHCKLIDLGIVRD-DEEELEKTLDNAFS--AGIDILLTSGGVSMGDK 273 (671)
Q Consensus 214 ~i~dsN~~~L~a~l~~~G~~v~~~~iv~D-d~~~i~~~l~~a~~--~~~DiVIttGG~s~G~~ 273 (671)
.+.|+..+.+..+|.+. +.+.+...+-+ .-+...+.++++++ +++||+|.+|.+.....
T Consensus 24 sll~~~~p~~~~ll~~~-i~l~~~~sl~~~~g~~a~~~l~~~~~~~~~~DilvVEGsV~~~~~ 85 (283)
T 1cc1_S 24 SLLNAVHPRIKEILLDV-ISLEFHPTVMASEGEMALAHMYEIAEKFNGNFFLLVEGAIPTAKE 85 (283)
T ss_dssp HHHTCBTTBHHHHHHHT-EEEEECTTTCSCCHHHHHHHHHHHHHHTTTSSEEEEESBEECGGG
T ss_pred HHHhccCCCHHHHHhhc-eeEEeccchhhhcchHHHHHHHHHHhcCCCceEEEEeCCcccCCC
Confidence 34566677777777333 34455544322 22333444554431 25899999999887643
No 104
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=24.30 E-value=1e+02 Score=30.61 Aligned_cols=45 Identities=13% Similarity=0.267 Sum_probs=30.3
Q ss_pred HHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCC
Q 005887 222 MLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 267 (671)
Q Consensus 222 ~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG 267 (671)
-+...+++.|+++...... ++.+...+.++.++++++|.||++|.
T Consensus 28 gi~~~~~~~g~~~~~~~~~-~~~~~~~~~l~~l~~~~vdgIi~~~~ 72 (296)
T 2hqb_A 28 GLLNIHSNLDVDVVLEEGV-NSEQKAHRRIKELVDGGVNLIFGHGH 72 (296)
T ss_dssp HHHHHHHHSCCEEEEECCC-CSHHHHHHHHHHHHHTTCCEEEECST
T ss_pred HHHHHHHHhCCeEEEEeCC-CCHHHHHHHHHHHHHCCCCEEEEcCH
Confidence 4556677889887654333 33345556777777667999999863
No 105
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=24.11 E-value=87 Score=29.41 Aligned_cols=89 Identities=15% Similarity=0.170 Sum_probs=54.2
Q ss_pred ecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeeccc--CCHHHHHHHhhhhhcccccEEEecC
Q 005887 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVR--DDEEELEKTLDNAFSAGIDILLTSG 266 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~--Dd~~~i~~~l~~a~~~~~DiVIttG 266 (671)
.+|+|+||.-|+-=.+. ..-....|+++|++. +.+++. -.++.+.+.++++.++++++||...
T Consensus 6 ~~~~V~IimgS~SD~~v--------------~~~a~~~L~~~gi~~-ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~A 70 (174)
T 3lp6_A 6 ERPRVGVIMGSDSDWPV--------------MADAAAALAEFDIPA-EVRVVSAHRTPEAMFSYARGAAARGLEVIIAGA 70 (174)
T ss_dssp CCCSEEEEESCGGGHHH--------------HHHHHHHHHHTTCCE-EEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CCCeEEEEECcHHhHHH--------------HHHHHHHHHHcCCCE-EEEEECCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 46889888766421110 123445678889863 444442 4567788888877766789999877
Q ss_pred CcccCCccchhhhhcccceEEEecccccCC
Q 005887 267 GVSMGDKDFVKPLLQKKGTIYFNKVCMKPG 296 (671)
Q Consensus 267 G~s~G~~D~~~~~l~~~g~i~f~~v~~~PG 296 (671)
|.+. +.+-++..+-.+-.=+|.++-|
T Consensus 71 G~aa----~LpgvvA~~t~~PVIgVP~~~~ 96 (174)
T 3lp6_A 71 GGAA----HLPGMVAAATPLPVIGVPVPLG 96 (174)
T ss_dssp ESSC----CHHHHHHHHCSSCEEEEEECCS
T ss_pred Cchh----hhHHHHHhccCCCEEEeeCCCC
Confidence 7644 6777776643333334554433
No 106
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=24.00 E-value=1.2e+02 Score=28.34 Aligned_cols=88 Identities=10% Similarity=0.100 Sum_probs=53.2
Q ss_pred cceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeeccc--CCHHHHHHHhhhhhcccccEEEecCC
Q 005887 190 TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVR--DDEEELEKTLDNAFSAGIDILLTSGG 267 (671)
Q Consensus 190 ~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~--Dd~~~i~~~l~~a~~~~~DiVIttGG 267 (671)
+|+|+||.-|+-=.+. ..-....|+++|+. .+.+++. -.++.+.+.++++.++++++||.-.|
T Consensus 5 ~p~V~IimgS~SD~~v--------------~~~a~~~l~~~gi~-~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG 69 (166)
T 3oow_A 5 SVQVGVIMGSKSDWST--------------MKECCDILDNLGIG-YECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAG 69 (166)
T ss_dssp CEEEEEEESSGGGHHH--------------HHHHHHHHHHTTCE-EEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEC
T ss_pred CCeEEEEECcHHhHHH--------------HHHHHHHHHHcCCC-EEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECC
Confidence 3788888766421110 12344567788874 3444443 45677888888876667899998877
Q ss_pred cccCCccchhhhhcccceEEEecccccCC
Q 005887 268 VSMGDKDFVKPLLQKKGTIYFNKVCMKPG 296 (671)
Q Consensus 268 ~s~G~~D~~~~~l~~~g~i~f~~v~~~PG 296 (671)
.+. ..+-++..+-.+-.=++.++-|
T Consensus 70 ~aa----~LpgvvA~~t~~PVIgVP~~~~ 94 (166)
T 3oow_A 70 GAA----HLPGMVAAKTTLPVLGVPVKSS 94 (166)
T ss_dssp SSC----CHHHHHHHTCSSCEEEEECCCT
T ss_pred cch----hhHHHHHhccCCCEEEeecCcC
Confidence 654 6777776653333334544333
No 107
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=23.97 E-value=95 Score=31.30 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=29.0
Q ss_pred HHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCC
Q 005887 222 MLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 267 (671)
Q Consensus 222 ~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG 267 (671)
-+...+++.|+++...... ++. ...+.|+.++++++|.||++|.
T Consensus 28 Gi~~~~~~~g~~~~~~~~~-~~~-~~~~~l~~l~~~~~dgIi~~~~ 71 (318)
T 2fqx_A 28 GISRFAQENNAKCKYVTAS-TDA-EYVPSLSAFADENMGLVVACGS 71 (318)
T ss_dssp HHHHHHHHTTCEEEEEECC-SGG-GHHHHHHHHHHTTCSEEEEEST
T ss_pred HHHHHHHHhCCeEEEEeCC-CHH-HHHHHHHHHHHcCCCEEEECCh
Confidence 4455667889887655442 332 3356677777667999999863
No 108
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=23.41 E-value=1.2e+02 Score=32.26 Aligned_cols=49 Identities=10% Similarity=0.223 Sum_probs=27.4
Q ss_pred HHHhhhhhcccccEEEecCCcc--cCCccchhhhhcccc--eEEEecccccCCCc
Q 005887 248 EKTLDNAFSAGIDILLTSGGVS--MGDKDFVKPLLQKKG--TIYFNKVCMKPGKP 298 (671)
Q Consensus 248 ~~~l~~a~~~~~DiVIttGG~s--~G~~D~~~~~l~~~g--~i~f~~v~~~PGkp 298 (671)
.+.+.+++. ++|+||+|=..- ..+.=++.+.++.+- .+++ .++..+|..
T Consensus 266 ~~~l~e~l~-~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIV-DvA~d~GG~ 318 (405)
T 4dio_A 266 AALVAEHIA-KQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVV-DLAVERGGN 318 (405)
T ss_dssp HHHHHHHHH-TCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEE-ETTGGGTCS
T ss_pred HhHHHHHhc-CCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEE-EEeCCCCCC
Confidence 345666666 599999873321 112225667777763 4444 355555543
No 109
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=23.22 E-value=40 Score=31.27 Aligned_cols=77 Identities=13% Similarity=0.097 Sum_probs=50.0
Q ss_pred HHHHHHhccce--eeeecccCCHHHHHHHhhhhh-cccccEEEecCCc---ccCCccchhhhhcccceEEEecccccCCC
Q 005887 224 LAAAMQQHCKL--IDLGIVRDDEEELEKTLDNAF-SAGIDILLTSGGV---SMGDKDFVKPLLQKKGTIYFNKVCMKPGK 297 (671)
Q Consensus 224 ~a~l~~~G~~v--~~~~iv~Dd~~~i~~~l~~a~-~~~~DiVIttGG~---s~G~~D~~~~~l~~~g~i~f~~v~~~PGk 297 (671)
...|++.|++. +..-.||--.|. --+.++++ ..++|.||+.|=+ +...+||+.....+- +-.+++.-|.
T Consensus 33 ~~~l~~~gv~~~~i~v~~VPGafEi-P~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~~vs~G----l~~v~L~~~v 107 (158)
T 1di0_A 33 VAELAAKTGGSVEVEIFDVPGAYEI-PLHAKTLARTGRYAAIVGAAFVIDGGIYDHDFVATAVING----MMQVQLETEV 107 (158)
T ss_dssp HHHHHHHHTTSEEEEEEEESSGGGH-HHHHHHHHHTSCCSEEEEEEECCCCSSBCCHHHHHHHHHH----HHHHHHHHCC
T ss_pred HHHHHHcCCCccceEEEECCcHHHH-HHHHHHHHhcCCCCEEEEeeccccCCCcHHHHHHHHHHHH----HHHHHhhcCC
Confidence 34556778754 455567876653 22223322 1359999999988 333588888777652 4457777889
Q ss_pred cceeeEec
Q 005887 298 PLTFAEIN 305 (671)
Q Consensus 298 p~~~a~~~ 305 (671)
|+.||.+.
T Consensus 108 PV~~GVLT 115 (158)
T 1di0_A 108 PVLSVVLT 115 (158)
T ss_dssp CEEEEEEC
T ss_pred CEEEEecC
Confidence 99999774
No 110
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=22.51 E-value=84 Score=29.01 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=31.3
Q ss_pred cceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc
Q 005887 190 TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 268 (671)
Q Consensus 190 ~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~ 268 (671)
||+|+|++.-. |-..+..+|++.|+++..+ +++. .++ ++|.||.+||-
T Consensus 2 ~p~Igi~~~~~------------------~~~~~~~~l~~~G~~~~~~---~~~~---------~l~-~~dglil~GG~ 49 (191)
T 2ywd_A 2 RGVVGVLALQG------------------DFREHKEALKRLGIEAKEV---RKKE---------HLE-GLKALIVPGGE 49 (191)
T ss_dssp -CCEEEECSSS------------------CHHHHHHHHHTTTCCCEEE---CSGG---------GGT-TCSEEEECSSC
T ss_pred CcEEEEEecCC------------------chHHHHHHHHHCCCEEEEe---CChh---------hhc-cCCEEEECCCC
Confidence 68999987521 1234677888899987654 3321 133 48999999994
No 111
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=21.95 E-value=1.3e+02 Score=28.02 Aligned_cols=86 Identities=13% Similarity=0.135 Sum_probs=51.9
Q ss_pred ecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecc--cCCHHHHHHHhhhhhcccccEEEecC
Q 005887 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIV--RDDEEELEKTLDNAFSAGIDILLTSG 266 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv--~Dd~~~i~~~l~~a~~~~~DiVIttG 266 (671)
.+|+|+||.-|+-=.+. ..-....|+++|++. +.+++ --.++.+.+.++++.++++++||.-.
T Consensus 5 ~~~~V~IimgS~SD~~v--------------~~~a~~~l~~~gi~~-ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~A 69 (169)
T 3trh_A 5 NKIFVAILMGSDSDLST--------------METAFTELKSLGIPF-EAHILSAHRTPKETVEFVENADNRGCAVFIAAA 69 (169)
T ss_dssp -CCEEEEEESCGGGHHH--------------HHHHHHHHHHTTCCE-EEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred CCCcEEEEECcHHhHHH--------------HHHHHHHHHHcCCCE-EEEEEcccCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 46889998766421110 123445678888764 34444 24567777877777666789999887
Q ss_pred CcccCCccchhhhhcccceEEEecccc
Q 005887 267 GVSMGDKDFVKPLLQKKGTIYFNKVCM 293 (671)
Q Consensus 267 G~s~G~~D~~~~~l~~~g~i~f~~v~~ 293 (671)
|.+. +.+-++..+-.+-.=+|.+
T Consensus 70 G~aa----~LpgvvA~~t~~PVIgVP~ 92 (169)
T 3trh_A 70 GLAA----HLAGTIAAHTLKPVIGVPM 92 (169)
T ss_dssp CSSC----CHHHHHHHTCSSCEEEEEC
T ss_pred Chhh----hhHHHHHhcCCCCEEEeec
Confidence 7654 6777776553322334444
No 112
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=21.87 E-value=1.2e+02 Score=28.51 Aligned_cols=85 Identities=12% Similarity=0.140 Sum_probs=51.7
Q ss_pred cceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecc--cCCHHHHHHHhhhhhcccccEEEecCC
Q 005887 190 TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIV--RDDEEELEKTLDNAFSAGIDILLTSGG 267 (671)
Q Consensus 190 ~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv--~Dd~~~i~~~l~~a~~~~~DiVIttGG 267 (671)
+|+|+||.-|+-=.+. ..-....|+++|++. +.+++ --.++.+.+.++++.++++++||.-.|
T Consensus 12 ~~~V~IimGS~SD~~v--------------~~~a~~~L~~~Gi~~-ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG 76 (174)
T 3kuu_A 12 GVKIAIVMGSKSDWAT--------------MQFAADVLTTLNVPF-HVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNG 76 (174)
T ss_dssp CCCEEEEESSGGGHHH--------------HHHHHHHHHHTTCCE-EEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEE
T ss_pred CCcEEEEECcHHHHHH--------------HHHHHHHHHHcCCCE-EEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECC
Confidence 4789888766421110 123445678899864 44444 245677778888776667899998777
Q ss_pred cccCCccchhhhhcccceEEEecccc
Q 005887 268 VSMGDKDFVKPLLQKKGTIYFNKVCM 293 (671)
Q Consensus 268 ~s~G~~D~~~~~l~~~g~i~f~~v~~ 293 (671)
.+. +.+-++..+-.+-.=+|.+
T Consensus 77 ~aa----~LpgvvA~~t~~PVIgVP~ 98 (174)
T 3kuu_A 77 GAA----HLPGMLAAKTLVPVLGVPV 98 (174)
T ss_dssp SSC----CHHHHHHHTCSSCEEEEEE
T ss_pred hhh----hhHHHHHhccCCCEEEeeC
Confidence 654 6777776653322334444
No 113
>3ayx_B Membrane-bound hydrogenase small subunit; oxidoreductase, membrane-bound NI-Fe hydrogenase; 1.18A {Hydrogenovibrio marinus} PDB: 3ayy_B 3ayz_B
Probab=21.56 E-value=54 Score=33.34 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=20.4
Q ss_pred ceEEEeCCCChhhHHHHHHHHHHHH
Q 005887 597 STLIINMPGNPNAVAECMEALLPAL 621 (671)
Q Consensus 597 ~~~i~~LPG~P~a~~~~~~~ilp~L 621 (671)
+++|+++||.|-.-...++.|+-+|
T Consensus 149 d~pvi~IPGCPP~Pe~i~~~l~~~L 173 (283)
T 3ayx_B 149 DKPIIKVPGCPPIAEVMTGVITYML 173 (283)
T ss_dssp CSCEEEECSSSCCHHHHHHHHHHHH
T ss_pred CCceEEeeCCCCCHHHHHHHHHHHH
Confidence 5789999999998888888776533
No 114
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=21.24 E-value=91 Score=30.91 Aligned_cols=58 Identities=10% Similarity=0.113 Sum_probs=38.2
Q ss_pred ceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHH-------HhhhhhcccccEEE
Q 005887 191 PTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEK-------TLDNAFSAGIDILL 263 (671)
Q Consensus 191 prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~-------~l~~a~~~~~DiVI 263 (671)
.+|+||-+|.= +..++..|.+.|.+|..+.+-++..+.+.+ .++++++ ++|+||
T Consensus 2 ~~i~iIG~G~m------------------G~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-~aDvvi 62 (287)
T 3pef_A 2 QKFGFIGLGIM------------------GSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVE-SCPVTF 62 (287)
T ss_dssp CEEEEECCSHH------------------HHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHH-HCSEEE
T ss_pred CEEEEEeecHH------------------HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHh-cCCEEE
Confidence 47888877741 456677777889888777666666565553 2344454 489988
Q ss_pred ecCC
Q 005887 264 TSGG 267 (671)
Q Consensus 264 ttGG 267 (671)
++=.
T Consensus 63 ~~vp 66 (287)
T 3pef_A 63 AMLA 66 (287)
T ss_dssp ECCS
T ss_pred EEcC
Confidence 7653
No 115
>1fui_A L-fucose isomerase; ketol isomerase, fucose metabolism, L-fucose to L conversion; HET: FOC; 2.50A {Escherichia coli} SCOP: b.43.2.1 c.85.1.1
Probab=21.13 E-value=1.3e+02 Score=33.81 Aligned_cols=76 Identities=12% Similarity=0.083 Sum_probs=39.5
Q ss_pred ecceEEEeecCCcccccccccccc--cccccchhHHHHHHHHHhc---cceeeeecccCCHHHHHHHhhhhhcccccEEE
Q 005887 189 RTPTIAVLSTGDELVEPTTQCLDR--GQIRDSNRAMLLAAAMQQH---CKLIDLGIVRDDEEELEKTLDNAFSAGIDILL 263 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~--G~i~dsN~~~L~a~l~~~G---~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVI 263 (671)
++|||||++|+|.-.-.-.+.+.. -......+-.|.+.|+..+ ++++.-..+-++.+..+...+...++++|.+|
T Consensus 5 ~~~kiGi~p~~~gr~~~~r~~l~~~~~~~~~~~~~~i~~~L~~~~~~pvevV~~~~~i~~~~~a~~~~e~f~~~~vd~vi 84 (591)
T 1fui_A 5 SLPKIGIRPVIDGRRMGVRESLEEQTMNMAKATAALLTEKLRHACGAAVECVISDTCIAGMAEAAACEEKFSSQNVGLTI 84 (591)
T ss_dssp SCCEEEEEEBCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHCBCTTSCBCCEEECSSCBCSHHHHHHHHHHHHTTTEEEEE
T ss_pred CCceEEEEeccccccccchhchhHHHHHHHHHHHHHHHHHHhhcCCCCeEEEECCCccCCHHHHHHHHHHhhccCCCEEE
Confidence 489999999998753110000000 0011122223444444333 56655444556666665555555555789888
Q ss_pred e
Q 005887 264 T 264 (671)
Q Consensus 264 t 264 (671)
|
T Consensus 85 ~ 85 (591)
T 1fui_A 85 T 85 (591)
T ss_dssp E
T ss_pred E
Confidence 6
No 116
>3sgw_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, valley fever; 1.70A {Coccidioides immitis} PDB: 3sdw_A 3qd5_A*
Probab=21.00 E-value=53 Score=31.17 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=36.0
Q ss_pred HHHHHHHHhc--cceeeeecc----cCCHHHHHHHhhhhhc-ccccEEEecCCcccCC
Q 005887 222 MLLAAAMQQH--CKLIDLGIV----RDDEEELEKTLDNAFS-AGIDILLTSGGVSMGD 272 (671)
Q Consensus 222 ~L~a~l~~~G--~~v~~~~iv----~Dd~~~i~~~l~~a~~-~~~DiVIttGG~s~G~ 272 (671)
.|.++|++.| ++|++++.- +.|.-.+...+.+++. ..+|.-|...|+|.|-
T Consensus 46 ~i~~~L~~~G~g~eV~D~G~~s~~e~~DYPd~a~~vA~~V~~ge~d~GIliCGTGiG~ 103 (184)
T 3sgw_A 46 ALKAHLSDNPLVSSITDVGVTSTTDKTAYPHVAIQAAQLIKDGKVDRALMICGTGLGV 103 (184)
T ss_dssp HHHHHHTTCTTEEEEEECSCCSTTCCCCHHHHHHHHHHHHHTTSCSEEEEEESSSHHH
T ss_pred HHHHHHHhCCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCCcEEEEEcCCcHHH
Confidence 5667777888 799999975 1356666666666553 2488888888888763
No 117
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=20.40 E-value=1.6e+02 Score=29.19 Aligned_cols=48 Identities=13% Similarity=0.082 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc
Q 005887 220 RAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 268 (671)
Q Consensus 220 ~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~ 268 (671)
...+...+++.|+++.... ..+|.+.-.+.++.++.+++|-||+.+-.
T Consensus 22 ~~gi~~~a~~~g~~~~~~~-~~~~~~~~~~~i~~~~~~~vdgiIi~~~~ 69 (330)
T 3uug_A 22 GNNIVKQLQEAGYKTDLQY-ADDDIPNQLSQIENMVTKGVKVLVIASID 69 (330)
T ss_dssp HHHHHHHHHHTTCEEEEEE-CTTCHHHHHHHHHHHHHHTCSEEEECCSS
T ss_pred HHHHHHHHHHcCCEEEEee-CCCCHHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 3456677888999876554 56677777788888777679999987644
No 118
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=20.34 E-value=1.2e+02 Score=29.95 Aligned_cols=58 Identities=12% Similarity=0.021 Sum_probs=38.2
Q ss_pred ceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHH-------HhhhhhcccccEEE
Q 005887 191 PTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEK-------TLDNAFSAGIDILL 263 (671)
Q Consensus 191 prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~-------~l~~a~~~~~DiVI 263 (671)
.+|+||-.|.= +..++..|.+.|.+|..+.+-++..+.+.+ .++++++ ++|+||
T Consensus 2 ~~I~iiG~G~m------------------G~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-~advvi 62 (287)
T 3pdu_A 2 TTYGFLGLGIM------------------GGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCA-ACDITI 62 (287)
T ss_dssp CCEEEECCSTT------------------HHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHH-HCSEEE
T ss_pred CeEEEEccCHH------------------HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHH-cCCEEE
Confidence 36888877751 456667777789888877776666565543 2334444 489888
Q ss_pred ecCC
Q 005887 264 TSGG 267 (671)
Q Consensus 264 ttGG 267 (671)
++=.
T Consensus 63 ~~v~ 66 (287)
T 3pdu_A 63 AMLA 66 (287)
T ss_dssp ECCS
T ss_pred EEcC
Confidence 8654
No 119
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=20.33 E-value=1.3e+02 Score=28.49 Aligned_cols=76 Identities=12% Similarity=0.196 Sum_probs=47.9
Q ss_pred cceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecc--cCCHHHHHHHhhhhhcccccEEEecCC
Q 005887 190 TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIV--RDDEEELEKTLDNAFSAGIDILLTSGG 267 (671)
Q Consensus 190 ~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv--~Dd~~~i~~~l~~a~~~~~DiVIttGG 267 (671)
-|.|+||.-|+-=.+. ..-....|+++|++ .+.+++ --.++.+.+.++++.++++++||...|
T Consensus 13 ~~~V~IimGS~SD~~v--------------~~~a~~~L~~~Gi~-~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG 77 (183)
T 1o4v_A 13 VPRVGIIMGSDSDLPV--------------MKQAAEILEEFGID-YEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAG 77 (183)
T ss_dssp -CEEEEEESCGGGHHH--------------HHHHHHHHHHTTCE-EEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEE
T ss_pred CCeEEEEeccHHHHHH--------------HHHHHHHHHHcCCC-eEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecC
Confidence 5788888766421111 12345667888987 344544 245677777777776667899998777
Q ss_pred cccCCccchhhhhcccc
Q 005887 268 VSMGDKDFVKPLLQKKG 284 (671)
Q Consensus 268 ~s~G~~D~~~~~l~~~g 284 (671)
.+. ..+-++..+-
T Consensus 78 ~aa----~LpgvvA~~t 90 (183)
T 1o4v_A 78 GAA----HLPGMVASIT 90 (183)
T ss_dssp SSC----CHHHHHHHHC
T ss_pred ccc----ccHHHHHhcc
Confidence 654 6676666543
No 120
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=20.10 E-value=35 Score=31.69 Aligned_cols=76 Identities=13% Similarity=0.073 Sum_probs=50.6
Q ss_pred HHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc---ccCCccchhhhhcccceEEEecccccCCCcce
Q 005887 224 LAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV---SMGDKDFVKPLLQKKGTIYFNKVCMKPGKPLT 300 (671)
Q Consensus 224 ~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~---s~G~~D~~~~~l~~~g~i~f~~v~~~PGkp~~ 300 (671)
...|++.|.+-+..-.||--.|. --+.+++++ ++|.||+.|=+ +...+||+.+...+- +-.+++.-|.|+.
T Consensus 40 ~~~l~~~G~~~i~v~~VPGafEi-P~aak~la~-~yDavIaLG~VIrG~T~Hfd~Va~~vs~G----l~~v~L~~~vPV~ 113 (160)
T 2c92_A 40 RKVAAGCGLDDPTVVRVLGAIEI-PVVAQELAR-NHDAVVALGVVIRGQTPHFDYVCDAVTQG----LTRVSLDSSTPIA 113 (160)
T ss_dssp HHHHHHTTCSCCEEEEESSGGGH-HHHHHHHHT-SCSEEEEEEEEECCSSTHHHHHHHHHHHH----HHHHHHHHTCCEE
T ss_pred HHHHHHcCCCceEEEECCcHHHH-HHHHHHHHh-cCCEEEEEeeeecCCchHHHHHHHHHHHH----HHHHHhhcCCCEE
Confidence 34556778754555567877643 334444444 49999999988 223478888776652 4456777788899
Q ss_pred eeEec
Q 005887 301 FAEIN 305 (671)
Q Consensus 301 ~a~~~ 305 (671)
||.+.
T Consensus 114 ~GVLT 118 (160)
T 2c92_A 114 NGVLT 118 (160)
T ss_dssp EEEEE
T ss_pred EEEcC
Confidence 98764
Done!