Query 005890
Match_columns 671
No_of_seqs 318 out of 1047
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 10:14:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005890.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005890hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmn_A Homeobox protein TGIF2L 99.7 3.7E-18 1.3E-22 146.0 6.8 67 389-455 6-72 (83)
2 2lk2_A Homeobox protein TGIF1; 99.7 1.1E-17 3.8E-22 146.3 4.6 61 395-455 10-70 (89)
3 1x2n_A Homeobox protein pknox1 99.7 2.9E-17 9.8E-22 136.3 6.7 66 389-454 6-71 (73)
4 3k2a_A Homeobox protein MEIS2; 99.7 3E-17 1E-21 135.3 5.6 61 395-455 3-63 (67)
5 1du6_A PBX1, homeobox protein 99.6 2.3E-16 7.8E-21 127.7 7.3 62 390-451 3-64 (64)
6 1b72_B Protein (PBX1); homeodo 99.6 3E-16 1E-20 134.0 6.2 65 391-455 2-66 (87)
7 1puf_B PRE-B-cell leukemia tra 99.6 5E-16 1.7E-20 128.8 7.1 64 391-454 2-65 (73)
8 1k61_A Mating-type protein alp 99.6 6.5E-16 2.2E-20 123.5 6.3 59 393-451 1-59 (60)
9 1le8_B Mating-type protein alp 99.6 8.7E-16 3E-20 130.9 6.6 62 392-453 4-65 (83)
10 1mnm_C Protein (MAT alpha-2 tr 99.6 1.8E-15 6.1E-20 129.7 7.4 61 390-450 27-87 (87)
11 2ecc_A Homeobox and leucine zi 99.5 3E-14 1E-18 121.4 5.3 61 392-455 5-65 (76)
12 1akh_A Protein (mating-type pr 99.5 6E-14 2.1E-18 112.2 6.0 56 391-449 6-61 (61)
13 1bw5_A ISL-1HD, insulin gene e 99.4 1.1E-13 3.8E-18 112.6 7.2 61 390-453 3-63 (66)
14 2cra_A Homeobox protein HOX-B1 99.4 2.3E-13 8E-18 112.1 7.7 61 389-452 6-66 (70)
15 2dmu_A Homeobox protein goosec 99.4 2.3E-13 8E-18 111.9 6.8 61 389-452 6-66 (70)
16 2da2_A Alpha-fetoprotein enhan 99.4 3.2E-13 1.1E-17 111.0 7.5 60 390-452 7-66 (70)
17 2djn_A Homeobox protein DLX-5; 99.4 2.8E-13 9.6E-18 111.6 6.7 61 389-452 6-66 (70)
18 2hdd_A Protein (engrailed home 99.4 2.3E-13 7.7E-18 109.3 5.9 57 391-450 4-60 (61)
19 2e1o_A Homeobox protein PRH; D 99.4 3E-13 1E-17 111.5 6.7 60 389-451 6-65 (70)
20 2da3_A Alpha-fetoprotein enhan 99.4 2.3E-13 8E-18 114.1 6.2 61 389-452 16-76 (80)
21 2da1_A Alpha-fetoprotein enhan 99.4 2.7E-13 9.4E-18 111.3 6.4 61 389-452 6-66 (70)
22 1ig7_A Homeotic protein MSX-1; 99.4 2.6E-13 9E-18 107.5 6.0 57 391-450 1-57 (58)
23 2dmq_A LIM/homeobox protein LH 99.4 3.5E-13 1.2E-17 113.4 6.4 61 389-452 6-66 (80)
24 2dmt_A Homeobox protein BARH-l 99.4 5.1E-13 1.7E-17 112.8 7.4 60 390-452 17-76 (80)
25 1jgg_A Segmentation protein EV 99.4 3.5E-13 1.2E-17 107.8 5.9 58 391-451 2-59 (60)
26 2k40_A Homeobox expressed in E 99.4 2.6E-13 8.7E-18 110.8 5.1 60 391-453 2-61 (67)
27 1nk2_P Homeobox protein VND; h 99.4 5E-13 1.7E-17 112.2 6.9 61 389-452 8-68 (77)
28 2h1k_A IPF-1, pancreatic and d 99.4 3.8E-13 1.3E-17 108.7 5.9 59 390-451 3-61 (63)
29 2vi6_A Homeobox protein nanog; 99.4 5.4E-13 1.8E-17 107.4 6.4 58 391-451 4-61 (62)
30 1fjl_A Paired protein; DNA-bin 99.4 5.2E-13 1.8E-17 112.9 6.2 60 390-452 18-77 (81)
31 3rkq_A Homeobox protein NKX-2. 99.4 6E-13 2E-17 104.8 6.1 57 390-449 2-58 (58)
32 2da4_A Hypothetical protein DK 99.4 1.8E-13 6E-18 115.5 3.3 62 390-451 8-70 (80)
33 2dms_A Homeobox protein OTX2; 99.4 8E-13 2.7E-17 111.5 6.8 61 389-452 6-66 (80)
34 2l7z_A Homeobox protein HOX-A1 99.4 1.2E-12 4E-17 109.0 7.5 60 390-452 7-66 (73)
35 2dn0_A Zinc fingers and homeob 99.3 1.1E-12 3.8E-17 109.8 6.9 59 391-452 9-67 (76)
36 3a02_A Homeobox protein arista 99.3 9.6E-13 3.3E-17 105.3 6.1 55 394-451 3-57 (60)
37 1ahd_P Antennapedia protein mu 99.3 7.3E-13 2.5E-17 108.9 5.5 60 390-452 2-61 (68)
38 2kt0_A Nanog, homeobox protein 99.3 1.5E-12 5.1E-17 110.4 7.5 61 389-452 21-81 (84)
39 2cue_A Paired box protein PAX6 99.3 9.8E-13 3.3E-17 111.1 6.2 61 389-452 6-66 (80)
40 1wh5_A ZF-HD homeobox family p 99.3 1.4E-12 4.7E-17 111.1 7.1 61 390-450 17-78 (80)
41 1ftt_A TTF-1 HD, thyroid trans 99.3 9.2E-13 3.1E-17 108.1 5.4 59 391-452 3-61 (68)
42 1zq3_P PRD-4, homeotic bicoid 99.3 9.4E-13 3.2E-17 108.1 5.2 60 390-452 2-61 (68)
43 2da5_A Zinc fingers and homeob 99.3 1.8E-12 6.2E-17 108.5 6.8 60 390-452 7-66 (75)
44 1puf_A HOX-1.7, homeobox prote 99.3 1.8E-12 6E-17 108.8 6.7 60 390-452 13-72 (77)
45 3a01_A Homeodomain-containing 99.3 1.2E-12 4.1E-17 114.0 5.5 63 389-454 16-78 (93)
46 1b8i_A Ultrabithorax, protein 99.3 1.5E-12 5.1E-17 110.5 5.9 60 390-452 20-79 (81)
47 1yz8_P Pituitary homeobox 2; D 99.3 5.7E-13 1.9E-17 109.2 3.1 60 390-452 3-62 (68)
48 2m0c_A Homeobox protein arista 99.3 3E-12 1E-16 106.0 7.2 60 390-452 9-68 (75)
49 3nar_A ZHX1, zinc fingers and 99.3 4.5E-12 1.5E-16 110.7 7.9 65 390-457 25-89 (96)
50 2ecb_A Zinc fingers and homeob 99.3 5.5E-12 1.9E-16 110.1 8.2 58 392-452 13-70 (89)
51 2ly9_A Zinc fingers and homeob 99.3 4.5E-12 1.5E-16 105.1 7.3 60 390-452 6-65 (74)
52 3a03_A T-cell leukemia homeobo 99.3 2.3E-12 7.8E-17 102.0 5.2 52 396-450 3-54 (56)
53 2cuf_A FLJ21616 protein; homeo 99.3 2.6E-12 9.1E-17 111.8 6.0 60 390-452 7-81 (95)
54 2hi3_A Homeodomain-only protei 99.3 2.7E-12 9.3E-17 106.6 5.6 58 392-452 4-62 (73)
55 2d5v_A Hepatocyte nuclear fact 99.3 3.7E-12 1.3E-16 120.4 6.9 60 390-452 97-156 (164)
56 1uhs_A HOP, homeodomain only p 99.3 3E-12 1E-16 106.0 5.4 59 392-452 3-61 (72)
57 3d1n_I POU domain, class 6, tr 99.3 4.7E-12 1.6E-16 118.7 7.4 59 389-450 92-150 (151)
58 2r5y_A Homeotic protein sex co 99.3 3.6E-12 1.2E-16 109.4 5.1 59 390-451 28-86 (88)
59 3nau_A Zinc fingers and homeob 99.2 3.6E-12 1.2E-16 106.1 4.5 53 397-452 11-63 (66)
60 1e3o_C Octamer-binding transcr 99.2 2.7E-11 9.2E-16 114.8 10.4 59 390-451 101-159 (160)
61 1b72_A Protein (homeobox prote 99.2 4.5E-12 1.5E-16 110.8 4.6 61 389-452 33-93 (97)
62 1wh7_A ZF-HD homeobox family p 99.2 1.2E-11 4E-16 105.7 6.8 61 390-451 17-79 (80)
63 2dmp_A Zinc fingers and homeob 99.2 1.3E-11 4.6E-16 106.7 7.0 57 392-451 15-71 (89)
64 1au7_A Protein PIT-1, GHF-1; c 99.2 8.1E-11 2.8E-15 110.2 11.7 59 390-451 87-145 (146)
65 2e19_A Transcription factor 8; 99.2 2.3E-11 7.8E-16 99.7 6.1 53 395-450 8-60 (64)
66 2da6_A Hepatocyte nuclear fact 99.2 3E-11 1E-15 108.1 6.3 63 389-454 5-88 (102)
67 2xsd_C POU domain, class 3, tr 99.2 2.6E-11 9E-16 115.7 6.1 60 390-452 99-158 (164)
68 2cqx_A LAG1 longevity assuranc 99.1 1.8E-11 6.3E-16 102.2 4.3 59 391-452 9-68 (72)
69 2l9r_A Homeobox protein NKX-3. 99.1 3.5E-11 1.2E-15 100.3 5.7 55 396-453 10-64 (69)
70 1lfb_A Liver transcription fac 99.1 6.8E-11 2.3E-15 104.9 5.5 61 391-454 10-91 (99)
71 3l1p_A POU domain, class 5, tr 99.1 6.2E-11 2.1E-15 111.9 4.3 59 390-451 96-154 (155)
72 1wi3_A DNA-binding protein SAT 99.0 3.7E-10 1.3E-14 94.9 7.7 62 388-451 5-66 (71)
73 1ic8_A Hepatocyte nuclear fact 99.0 4.2E-10 1.4E-14 110.6 8.2 57 391-450 116-193 (194)
74 1x2m_A LAG1 longevity assuranc 99.0 1.7E-10 5.9E-15 95.3 4.6 51 399-451 9-59 (64)
75 1mh3_A Maltose binding-A1 home 98.9 8.3E-10 2.8E-14 113.9 5.6 53 394-449 369-421 (421)
76 2h8r_A Hepatocyte nuclear fact 98.9 1.6E-09 5.6E-14 108.4 6.4 57 390-449 142-219 (221)
77 2da7_A Zinc finger homeobox pr 98.7 9.6E-09 3.3E-13 86.6 5.6 47 399-448 14-60 (71)
78 2nzz_A Penetratin conjugated G 96.4 0.00071 2.4E-08 50.6 0.6 20 435-454 1-20 (37)
79 2ys9_A Homeobox and leucine zi 92.9 0.061 2.1E-06 45.4 3.2 44 397-443 13-56 (70)
80 4afl_A P29ING4, inhibitor of g 72.7 33 0.0011 29.7 10.6 82 280-377 17-98 (104)
81 1tty_A Sigma-A, RNA polymerase 63.3 5.5 0.00019 33.1 3.5 56 396-455 18-73 (87)
82 1hlv_A CENP-B, major centromer 62.5 14 0.00047 32.2 6.1 49 392-446 3-51 (131)
83 3hug_A RNA polymerase sigma fa 61.2 3.7 0.00013 34.3 2.0 49 396-452 37-85 (92)
84 1je8_A Nitrate/nitrite respons 55.7 7.9 0.00027 31.9 3.2 54 395-457 20-73 (82)
85 3mzy_A RNA polymerase sigma-H 55.6 4.9 0.00017 35.2 1.9 48 396-452 109-156 (164)
86 1fse_A GERE; helix-turn-helix 54.6 11 0.00036 29.4 3.6 56 392-456 7-62 (74)
87 2o8x_A Probable RNA polymerase 54.4 5.7 0.00019 30.7 1.9 49 396-452 15-63 (70)
88 2p7v_B Sigma-70, RNA polymeras 53.4 8.4 0.00029 30.2 2.8 56 396-455 5-60 (68)
89 1x3u_A Transcriptional regulat 53.3 7.1 0.00024 31.0 2.4 54 396-458 16-69 (79)
90 2glo_A Brinker CG9653-PA; prot 52.0 21 0.00072 27.4 4.9 46 394-443 3-48 (59)
91 2elh_A CG11849-PA, LD40883P; s 50.6 23 0.00077 29.4 5.2 44 391-442 17-60 (87)
92 1gk4_A Vimentin; intermediate 49.6 1.2E+02 0.0041 25.6 10.4 40 275-314 2-41 (84)
93 3mov_A Lamin-B1; LMNB1, B-type 49.5 47 0.0016 29.1 7.2 37 278-314 16-52 (95)
94 1tc3_C Protein (TC3 transposas 48.7 17 0.00058 25.3 3.6 43 395-445 4-46 (51)
95 1ku3_A Sigma factor SIGA; heli 48.1 8.1 0.00028 30.8 1.9 55 395-453 9-64 (73)
96 3c57_A Two component transcrip 47.8 10 0.00035 32.0 2.7 54 395-457 26-79 (95)
97 2rnj_A Response regulator prot 46.3 9.8 0.00034 31.6 2.3 54 395-457 28-81 (91)
98 1s7o_A Hypothetical UPF0122 pr 44.2 19 0.00063 31.9 3.9 50 396-453 22-71 (113)
99 1p4w_A RCSB; solution structur 42.6 42 0.0014 28.9 5.8 56 394-458 32-87 (99)
100 1rp3_A RNA polymerase sigma fa 42.2 9.1 0.00031 35.7 1.6 49 396-452 187-235 (239)
101 1deq_A Fibrinogen (alpha chain 39.7 2E+02 0.0068 31.2 11.4 70 277-349 63-136 (390)
102 1xsv_A Hypothetical UPF0122 pr 37.8 21 0.00071 31.4 3.1 51 396-454 25-75 (113)
103 1or7_A Sigma-24, RNA polymeras 33.1 14 0.00047 33.5 1.2 49 396-452 140-188 (194)
104 3clo_A Transcriptional regulat 31.7 35 0.0012 33.4 3.9 54 395-457 196-249 (258)
105 1jko_C HIN recombinase, DNA-in 31.2 30 0.001 24.5 2.6 41 396-444 5-45 (52)
106 1gs9_A Apolipoprotein E, APOE4 30.7 1.6E+02 0.0055 27.9 8.2 65 275-351 93-157 (165)
107 3lsg_A Two-component response 30.5 68 0.0023 26.6 5.0 42 401-445 3-44 (103)
108 3t72_q RNA polymerase sigma fa 30.3 42 0.0014 29.1 3.8 56 396-455 19-74 (99)
109 2q1z_A RPOE, ECF SIGE; ECF sig 30.1 11 0.00038 34.0 0.1 48 396-451 135-182 (184)
110 3ghg_A Fibrinogen alpha chain; 30.1 1.6E+02 0.0054 33.3 9.0 69 275-346 58-130 (562)
111 1pdn_C Protein (PRD paired); p 27.8 1.1E+02 0.0039 25.3 6.0 46 395-443 74-126 (128)
112 1hlv_A CENP-B, major centromer 27.6 1.2E+02 0.0041 26.1 6.3 58 391-448 67-130 (131)
113 3tnu_A Keratin, type I cytoske 26.9 3.5E+02 0.012 24.3 11.3 39 276-314 54-92 (131)
114 1iuf_A Centromere ABP1 protein 26.9 66 0.0023 29.1 4.6 52 391-445 6-61 (144)
115 1tjl_A DNAK suppressor protein 26.8 2.6E+02 0.009 26.1 8.8 30 278-307 36-65 (151)
116 3ulq_B Transcriptional regulat 26.0 60 0.0021 27.3 3.9 54 394-456 27-80 (90)
117 2jpc_A SSRB; DNA binding prote 25.6 44 0.0015 25.1 2.7 34 424-457 17-50 (61)
118 1x8y_A Lamin A/C; structural p 25.4 1.7E+02 0.0057 24.9 6.6 38 277-314 6-43 (86)
119 1wlx_A Alpha-actinin 4; three- 25.2 1.4E+02 0.0046 27.7 6.4 71 272-344 43-116 (129)
120 3tnu_B Keratin, type II cytosk 24.6 3.8E+02 0.013 24.0 11.3 40 275-314 51-90 (129)
121 1k78_A Paired box protein PAX5 23.9 3E+02 0.01 24.0 8.4 49 394-445 88-143 (149)
122 1we3_A CPN60(groel); chaperoni 23.6 2.3E+02 0.0078 31.5 9.0 60 272-332 356-428 (543)
123 3lay_A Zinc resistance-associa 23.4 3.8E+02 0.013 25.8 9.4 64 269-344 66-131 (175)
124 2a6c_A Helix-turn-helix motif; 22.7 52 0.0018 26.4 2.8 24 423-446 34-57 (83)
125 2jn6_A Protein CGL2762, transp 22.6 85 0.0029 25.9 4.2 47 394-446 3-49 (97)
126 2xi8_A Putative transcription 22.4 42 0.0014 24.9 2.0 23 423-445 17-39 (66)
127 2r1j_L Repressor protein C2; p 22.0 44 0.0015 25.0 2.1 23 423-445 21-43 (68)
128 1l0o_C Sigma factor; bergerat 21.8 19 0.00066 33.4 0.0 46 396-449 198-243 (243)
129 3bd1_A CRO protein; transcript 21.8 45 0.0015 26.4 2.2 23 423-445 14-36 (79)
130 1zug_A Phage 434 CRO protein; 21.3 44 0.0015 25.2 2.0 24 423-446 19-42 (71)
131 3b7h_A Prophage LP1 protein 11 20.5 52 0.0018 25.4 2.3 23 423-445 23-45 (78)
132 2k27_A Paired box protein PAX- 20.2 2.1E+02 0.0071 25.5 6.6 51 394-447 81-138 (159)
No 1
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.72 E-value=3.7e-18 Score=145.95 Aligned_cols=67 Identities=39% Similarity=0.778 Sum_probs=61.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcchhhh
Q 005890 389 HAWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPMVEE 455 (671)
Q Consensus 389 ~~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~iee 455 (671)
.++|+|+.|+++++.+|+.||.+|..||||+.++|..||..|||+..||.+||+|+|+|.|++++++
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~ 72 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQ 72 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHh
Confidence 3456666799999999999999999999999999999999999999999999999999999887654
No 2
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-17 Score=146.35 Aligned_cols=61 Identities=48% Similarity=0.836 Sum_probs=57.9
Q ss_pred CCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcchhhh
Q 005890 395 RGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPMVEE 455 (671)
Q Consensus 395 R~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~iee 455 (671)
.-||++++.+|++||.+|+.+|||++++|..||++|||+++||+|||+|+|+|.|++++++
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 3599999999999999999999999999999999999999999999999999999987654
No 3
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=2.9e-17 Score=136.32 Aligned_cols=66 Identities=44% Similarity=0.781 Sum_probs=61.1
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcchhh
Q 005890 389 HAWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPMVE 454 (671)
Q Consensus 389 ~~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ie 454 (671)
..+|+|+.|+++++.+|+.||.+|..+|||+.++|..||..|||++.||.+||+|+|+|.|+++++
T Consensus 6 ~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 6 SGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 345666679999999999999999999999999999999999999999999999999999998864
No 4
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=3e-17 Score=135.31 Aligned_cols=61 Identities=54% Similarity=1.008 Sum_probs=54.5
Q ss_pred CCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcchhhh
Q 005890 395 RGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPMVEE 455 (671)
Q Consensus 395 R~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~iee 455 (671)
.+||++++.+|+.||.+|+.+|||+..+|..||..|||+..||.+||+|+|+|.|++++++
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 63 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQ 63 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC---
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHH
Confidence 4699999999999999999999999999999999999999999999999999999998765
No 5
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=2.3e-16 Score=127.66 Aligned_cols=62 Identities=40% Similarity=0.706 Sum_probs=58.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcc
Q 005890 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKP 451 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp 451 (671)
.+|+++.|+++++.+|+.||.+|..+|||+.++|..||..+||+..||.+||+|+|+|.||+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 35667779999999999999999999999999999999999999999999999999999874
No 6
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.62 E-value=3e-16 Score=134.05 Aligned_cols=65 Identities=40% Similarity=0.703 Sum_probs=59.9
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcchhhh
Q 005890 391 WRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPMVEE 455 (671)
Q Consensus 391 kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~iee 455 (671)
+|+|+.|+++++.+|+.||.+|..+|||+.++|..||+.+||++.||.+||+|+|+|.|+.+.+.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 46777899999999999999999999999999999999999999999999999999999877543
No 7
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.62 E-value=5e-16 Score=128.85 Aligned_cols=64 Identities=41% Similarity=0.734 Sum_probs=59.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcchhh
Q 005890 391 WRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPMVE 454 (671)
Q Consensus 391 kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ie 454 (671)
+|+|+.|+++++.+|+.||.+|..+|||+.++|..||..+||+..||.+||+|+|+|.|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 5677789999999999999999999999999999999999999999999999999999887643
No 8
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.60 E-value=6.5e-16 Score=123.50 Aligned_cols=59 Identities=27% Similarity=0.476 Sum_probs=55.8
Q ss_pred CCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcc
Q 005890 393 PQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKP 451 (671)
Q Consensus 393 krR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp 451 (671)
+++.|+++++.+|+.||..|+.+|||+.++|..||+.+||++.||.+||+|+|+|.|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 35679999999999999999999999999999999999999999999999999998764
No 9
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.60 E-value=8.7e-16 Score=130.94 Aligned_cols=62 Identities=24% Similarity=0.452 Sum_probs=57.2
Q ss_pred CCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcchh
Q 005890 392 RPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPMV 453 (671)
Q Consensus 392 RkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~i 453 (671)
+++++|+.+++.+|+.||..|+.+|||+..+|..||..+||+..||.+||+|+|+|.|+..+
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 34445999999999999999999999999999999999999999999999999999998754
No 10
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.58 E-value=1.8e-15 Score=129.74 Aligned_cols=61 Identities=26% Similarity=0.436 Sum_probs=56.3
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCc
Q 005890 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWK 450 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kK 450 (671)
++|+|+.|+++++.+|+.||..|+.+|||+.++|..||+.+||+..||.+||+|+|+|.|.
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 3445556999999999999999999999999999999999999999999999999999763
No 11
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.47 E-value=3e-14 Score=121.37 Aligned_cols=61 Identities=21% Similarity=0.446 Sum_probs=55.8
Q ss_pred CCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcchhhh
Q 005890 392 RPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPMVEE 455 (671)
Q Consensus 392 RkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~iee 455 (671)
+++++|+++++.+|++||.. +|||+.++|..||+.|||++.||.+||+|+|.|.|+..+.-
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~---~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~w 65 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQ---CQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLKW 65 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCSS
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHHH
Confidence 45667999999999999998 89999999999999999999999999999999998765443
No 12
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.46 E-value=6e-14 Score=112.25 Aligned_cols=56 Identities=27% Similarity=0.399 Sum_probs=48.0
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcC
Q 005890 391 WRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLW 449 (671)
Q Consensus 391 kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~k 449 (671)
+|+|..|+.+++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.|
T Consensus 6 rr~Rt~ft~~q~~~Le~~f~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 6 PKGKSSISPQARAFLEEVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCHHHHHHHHHHHHh---CCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 455566999999999999998 89999999999999999999999999999999874
No 13
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.45 E-value=1.1e-13 Score=112.65 Aligned_cols=61 Identities=30% Similarity=0.411 Sum_probs=56.2
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcchh
Q 005890 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPMV 453 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~i 453 (671)
.+|+|..|+.+++.+|+.||.. +|||+..++..||..+||++.||.+||+|+|.|.|+..+
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAA---NPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHhh
Confidence 4566777999999999999998 899999999999999999999999999999999988653
No 14
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.43 E-value=2.3e-13 Score=112.08 Aligned_cols=61 Identities=16% Similarity=0.268 Sum_probs=55.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 389 HAWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 389 ~~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
..+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 6 SGRKKRIPYSKGQLRELEREYAA---NKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCSCCCSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 34566667999999999999988 99999999999999999999999999999999998854
No 15
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=2.3e-13 Score=111.92 Aligned_cols=61 Identities=23% Similarity=0.409 Sum_probs=55.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 389 HAWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 389 ~~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
..+|+|..|+.+++.+|+.||.. +|||+..++..||..+||++.||.+||+|+|.|.++..
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQE---TKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 34566777999999999999998 99999999999999999999999999999999988754
No 16
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.41 E-value=3.2e-13 Score=110.95 Aligned_cols=60 Identities=23% Similarity=0.426 Sum_probs=55.5
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
.+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 7 GRSSRTRFTDYQLRVLQDFFDA---NAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 4566667999999999999998 99999999999999999999999999999999998854
No 17
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=2.8e-13 Score=111.62 Aligned_cols=61 Identities=25% Similarity=0.380 Sum_probs=55.6
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 389 HAWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 389 ~~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
..+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.||..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 6 SGRKPRTIYSSFQLAALQRRFQK---TQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 34566667999999999999987 99999999999999999999999999999999998853
No 18
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.40 E-value=2.3e-13 Score=109.26 Aligned_cols=57 Identities=28% Similarity=0.514 Sum_probs=51.9
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCc
Q 005890 391 WRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWK 450 (671)
Q Consensus 391 kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kK 450 (671)
+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.||
T Consensus 4 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 4 KRPRTAFSSEQLARLKREFNE---NRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ---CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 566777999999999999998 999999999999999999999999999999999876
No 19
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.40 E-value=3e-13 Score=111.46 Aligned_cols=60 Identities=22% Similarity=0.311 Sum_probs=55.2
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcc
Q 005890 389 HAWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKP 451 (671)
Q Consensus 389 ~~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp 451 (671)
..+|+|..|+.+++.+|+.||.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFET---QKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRS 65 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCC
Confidence 34566777999999999999988 9999999999999999999999999999999998864
No 20
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.40 E-value=2.3e-13 Score=114.07 Aligned_cols=61 Identities=23% Similarity=0.323 Sum_probs=55.6
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 389 HAWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 389 ~~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
..+|+|..|+.+++.+|+.+|.. +|||+..++..||+.+||++.||.+||+|+|.|.||..
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~f~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 16 RDKRLRTTITPEQLEILYQKYLL---DSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCTTCCSSCCTTTHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 34566667999999999999998 89999999999999999999999999999999998754
No 21
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.40 E-value=2.7e-13 Score=111.34 Aligned_cols=61 Identities=18% Similarity=0.434 Sum_probs=55.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 389 HAWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 389 ~~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
..+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++..
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 6 SGKRPRTRITDDQLRVLRQYFDI---NNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCSCSCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 34566667999999999999998 89999999999999999999999999999999998754
No 22
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.40 E-value=2.6e-13 Score=107.52 Aligned_cols=57 Identities=19% Similarity=0.367 Sum_probs=53.3
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCc
Q 005890 391 WRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWK 450 (671)
Q Consensus 391 kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kK 450 (671)
+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQ---KQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 356777999999999999998 999999999999999999999999999999999865
No 23
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=3.5e-13 Score=113.39 Aligned_cols=61 Identities=25% Similarity=0.487 Sum_probs=55.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 389 HAWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 389 ~~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
..+|+|+.|+.+++.+|+.||.. +|||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 6 SGKRMRTSFKHHQLRTMKSYFAI---NHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHH
Confidence 34566777999999999999988 89999999999999999999999999999999998754
No 24
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=5.1e-13 Score=112.83 Aligned_cols=60 Identities=25% Similarity=0.373 Sum_probs=55.2
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
.+|+|..|+.+++.+|+.+|.. ++||+..++..||+.+||++.||.+||+|+|.|.||..
T Consensus 17 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 17 GRRSRTVFTELQLMGLEKRFEK---QKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCSCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 4455666999999999999998 99999999999999999999999999999999999864
No 25
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.38 E-value=3.5e-13 Score=107.83 Aligned_cols=58 Identities=21% Similarity=0.343 Sum_probs=53.8
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcc
Q 005890 391 WRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKP 451 (671)
Q Consensus 391 kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp 451 (671)
+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYK---ENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 467778999999999999988 9999999999999999999999999999999998763
No 26
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.38 E-value=2.6e-13 Score=110.82 Aligned_cols=60 Identities=22% Similarity=0.388 Sum_probs=55.5
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcchh
Q 005890 391 WRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPMV 453 (671)
Q Consensus 391 kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~i 453 (671)
+|+|..|+.+++.+|+.||.. +|||+..++..||..+||++.||.+||+|+|.|.|+...
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRV---NCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 466777999999999999987 999999999999999999999999999999999988654
No 27
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.38 E-value=5e-13 Score=112.16 Aligned_cols=61 Identities=20% Similarity=0.275 Sum_probs=55.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 389 HAWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 389 ~~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
..+|+|..|+..++.+|+.+|.. ++||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 8 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~ 68 (77)
T 1nk2_P 8 KKRKRRVLFTKAQTYELERRFRQ---QRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQ 68 (77)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhh
Confidence 34555667999999999999998 99999999999999999999999999999999998755
No 28
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.38 E-value=3.8e-13 Score=108.72 Aligned_cols=59 Identities=20% Similarity=0.283 Sum_probs=53.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcc
Q 005890 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKP 451 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp 451 (671)
.+|+|..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLF---NKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 3566777999999999999988 9999999999999999999999999999999998874
No 29
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.37 E-value=5.4e-13 Score=107.36 Aligned_cols=58 Identities=19% Similarity=0.281 Sum_probs=51.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcc
Q 005890 391 WRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKP 451 (671)
Q Consensus 391 kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp 451 (671)
+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 4 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 4 QKMRTVFSQAQLCALKDRFQK---QKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ----CCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 456667999999999999988 9999999999999999999999999999999998873
No 30
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.37 E-value=5.2e-13 Score=112.86 Aligned_cols=60 Identities=27% Similarity=0.435 Sum_probs=54.9
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
.+|+|..|+..++.+|+.||.. +|||+..++..||+.+||++.||.+||+|+|.|.|+..
T Consensus 18 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 18 QRRSRTTFSASQLDELERAFER---TQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 4556667999999999999988 99999999999999999999999999999999988743
No 31
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.36 E-value=6e-13 Score=104.76 Aligned_cols=57 Identities=26% Similarity=0.352 Sum_probs=52.5
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcC
Q 005890 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLW 449 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~k 449 (671)
++|++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQ---QRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 3456677999999999999987 99999999999999999999999999999999865
No 32
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.8e-13 Score=115.50 Aligned_cols=62 Identities=13% Similarity=0.132 Sum_probs=54.9
Q ss_pred CCCCCCCCChhHHHHHHHHHHHh-hCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcc
Q 005890 390 AWRPQRGLPERAVTILRAWLFEH-FLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKP 451 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH-~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp 451 (671)
.+|+|..|+.+++.+|+.||..+ ..+|||+..++..||+.+||++.||.+||+|+|+|.++.
T Consensus 8 ~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 8 ALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 44555669999999999999884 444999999999999999999999999999999998773
No 33
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.36 E-value=8e-13 Score=111.48 Aligned_cols=61 Identities=21% Similarity=0.372 Sum_probs=55.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 389 HAWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 389 ~~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
..+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~ 66 (80)
T 2dms_A 6 SGRRERTTFTRAQLDVLEALFAK---TRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 66 (80)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHH
Confidence 34566667999999999999998 99999999999999999999999999999999987643
No 34
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.35 E-value=1.2e-12 Score=109.00 Aligned_cols=60 Identities=18% Similarity=0.293 Sum_probs=55.2
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
.+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 7 GRKKRVPYTKVQLKELEREYAT---NKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHH---TSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCHHHHHHHHHHHhh---CCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 3456667999999999999998 99999999999999999999999999999999999864
No 35
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.1e-12 Score=109.78 Aligned_cols=59 Identities=20% Similarity=0.362 Sum_probs=54.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 391 WRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 391 kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
.+.|+.|+++++.+|+.||.. +|||+..++..||+.+||++.||.+||+|+|.|.|+..
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCR---NQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---SSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCccCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 345667999999999999988 99999999999999999999999999999999999854
No 36
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.34 E-value=9.6e-13 Score=105.25 Aligned_cols=55 Identities=24% Similarity=0.395 Sum_probs=49.9
Q ss_pred CCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcc
Q 005890 394 QRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKP 451 (671)
Q Consensus 394 rR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp 451 (671)
|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 3 Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 57 (60)
T 3a02_A 3 HMTFTSFQLEELEKAFSR---THYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57 (60)
T ss_dssp --CCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC--
T ss_pred CcccCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhh
Confidence 567999999999999988 9999999999999999999999999999999999875
No 37
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.34 E-value=7.3e-13 Score=108.87 Aligned_cols=60 Identities=20% Similarity=0.241 Sum_probs=55.2
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
++|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 3566777999999999999998 99999999999999999999999999999999988754
No 38
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.34 E-value=1.5e-12 Score=110.43 Aligned_cols=61 Identities=18% Similarity=0.275 Sum_probs=55.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 389 HAWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 389 ~~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
..+|+|..|+..++.+|+.+|.. ++||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 21 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 21 KKQKTRTVFSSTQLCVLNDRFQR---QKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CSCCCSSCCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 34556667999999999999988 99999999999999999999999999999999998754
No 39
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.34 E-value=9.8e-13 Score=111.10 Aligned_cols=61 Identities=18% Similarity=0.357 Sum_probs=55.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 389 HAWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 389 ~~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
..+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFER---THYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREE 66 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHh
Confidence 34566677999999999999987 99999999999999999999999999999999998854
No 40
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.34 E-value=1.4e-12 Score=111.07 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=55.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHH-hhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCc
Q 005890 390 AWRPQRGLPERAVTILRAWLFE-HFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWK 450 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~e-H~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kK 450 (671)
++|+|..|+.+++.+|+.+|.. ++.+|||+..+|..||..+||++.||.+||+|+|.|.++
T Consensus 17 ~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 17 RKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp SCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 4555666999999999998875 577899999999999999999999999999999999886
No 41
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.33 E-value=9.2e-13 Score=108.12 Aligned_cols=59 Identities=22% Similarity=0.331 Sum_probs=54.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 391 WRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 391 kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++..
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 3 RKRRVLFSQAQVYELERRFKQ---QKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp SSSCSSCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCccCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 456667999999999999998 99999999999999999999999999999999988754
No 42
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.32 E-value=9.4e-13 Score=108.06 Aligned_cols=60 Identities=20% Similarity=0.283 Sum_probs=55.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
.+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~ 61 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQ---GRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 61 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHh
Confidence 3566777999999999999987 99999999999999999999999999999999988754
No 43
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.8e-12 Score=108.51 Aligned_cols=60 Identities=18% Similarity=0.349 Sum_probs=54.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
..++++.|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 7 ~~~kr~~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 7 GPTKYKERAPEQLRALESSFAQ---NPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCCCccCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 3456667999999999999998 99999999999999999999999999999999988753
No 44
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.32 E-value=1.8e-12 Score=108.81 Aligned_cols=60 Identities=20% Similarity=0.263 Sum_probs=55.2
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
.+|+|..|+..++.+|+.+|.. ++||+..++..||..+||++.||.+||+|+|.|.++..
T Consensus 13 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 72 (77)
T 1puf_A 13 TRKKRCPYTKHQTLELEKEFLF---NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKIN 72 (77)
T ss_dssp TSCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhh
Confidence 4456667999999999999988 99999999999999999999999999999999998755
No 45
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.31 E-value=1.2e-12 Score=113.99 Aligned_cols=63 Identities=22% Similarity=0.420 Sum_probs=56.6
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcchhh
Q 005890 389 HAWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPMVE 454 (671)
Q Consensus 389 ~~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ie 454 (671)
..+|+|..|+.+++.+|+.+|.. ++||+..++..||..+||++.||.+||+|+|.|.|+...+
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 78 (93)
T 3a01_A 16 KRKKPRTSFTRIQVAELEKRFHK---QKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAE 78 (93)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHH
Confidence 34556667999999999999998 9999999999999999999999999999999999886543
No 46
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.31 E-value=1.5e-12 Score=110.48 Aligned_cols=60 Identities=22% Similarity=0.323 Sum_probs=53.2
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
.+|+|..|+.+++.+|+.+|.. ++||+..++..||..+||++.||.+||+|+|.|.||..
T Consensus 20 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 20 RRRGRQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCcccCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 3456667999999999999998 99999999999999999999999999999999998854
No 47
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.31 E-value=5.7e-13 Score=109.21 Aligned_cols=60 Identities=27% Similarity=0.405 Sum_probs=55.0
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
.+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++..
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQR---NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTT---CSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHh
Confidence 3566667999999999999987 99999999999999999999999999999999988754
No 48
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.31 E-value=3e-12 Score=105.97 Aligned_cols=60 Identities=27% Similarity=0.378 Sum_probs=54.6
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
++|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 9 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 9 KRRNRTTFTSYQLEELEKVFQK---THYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp CCSCSCSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 3455566999999999999998 99999999999999999999999999999999998754
No 49
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.29 E-value=4.5e-12 Score=110.68 Aligned_cols=65 Identities=18% Similarity=0.354 Sum_probs=58.0
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcchhhhhh
Q 005890 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPMVEEMY 457 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~iee~~ 457 (671)
.+|+|+.|+..++.+|+.+|.. ++||+..++..||..+||++.||.+||+|+|.|.||..++-++
T Consensus 25 ~~r~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk~~~ 89 (96)
T 3nar_A 25 STGKICKKTPEQLHMLKSAFVR---TQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKWYY 89 (96)
T ss_dssp --CCSSSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcccHHH
Confidence 4466777999999999999988 9999999999999999999999999999999999997765544
No 50
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.29 E-value=5.5e-12 Score=110.10 Aligned_cols=58 Identities=19% Similarity=0.299 Sum_probs=52.9
Q ss_pred CCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 392 RPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 392 RkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
++.+.|+.+++.+|+.||.. ++||+..+|..||..|||++.||.+||+|+|+|.++..
T Consensus 13 ~k~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 13 QKFKEKTAEQLRVLQASFLN---SSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred hhhccCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 34558999999999999988 99999999999999999999999999999999877643
No 51
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.29 E-value=4.5e-12 Score=105.11 Aligned_cols=60 Identities=22% Similarity=0.444 Sum_probs=55.3
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
.++.|..|+.+++.+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.||..
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLK---NQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 3566777999999999999998 99999999999999999999999999999999998753
No 52
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.28 E-value=2.3e-12 Score=102.04 Aligned_cols=52 Identities=25% Similarity=0.458 Sum_probs=49.4
Q ss_pred CCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCc
Q 005890 396 GLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWK 450 (671)
Q Consensus 396 ~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kK 450 (671)
.|+++++.+|+.+|.. +|||+..++..||+.+||++.||.+||+|+|.|.||
T Consensus 3 ~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr 54 (56)
T 3a03_A 3 SFSRSQVLELERRFLR---QKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54 (56)
T ss_dssp -CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHh---cCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhcc
Confidence 5899999999999988 999999999999999999999999999999999876
No 53
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.28 E-value=2.6e-12 Score=111.82 Aligned_cols=60 Identities=18% Similarity=0.454 Sum_probs=55.2
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhC---------------CChhhhhhhhhhhhhhcCcch
Q 005890 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTG---------------LTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TG---------------LS~kQVsNWFiNaRrR~kKp~ 452 (671)
.+|+|..|++.++.+|+.||.+ +|||+..+|..||..++ |+..||.+||+|+|+|.|+..
T Consensus 7 ~rr~R~~ft~~ql~~Le~~F~~---~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 7 GRGSRFTWRKECLAVMESYFNE---NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp CCCCSCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 4556667999999999999998 99999999999999999 999999999999999998754
No 54
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.28 E-value=2.7e-12 Score=106.64 Aligned_cols=58 Identities=22% Similarity=0.302 Sum_probs=53.2
Q ss_pred CCCCCCChhHHHHHHHHHH-HhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 392 RPQRGLPERAVTILRAWLF-EHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 392 RkrR~Lpk~~~~iLr~Wf~-eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
++|..|+.+++.+|+.+|. . +|||+..++..||..+||++.||.+||+|+|.|.++..
T Consensus 4 k~Rt~ft~~Q~~~Le~~F~~~---~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 4 QTVSGPTEDQVEILEYNFNKV---NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp SCCSSCCHHHHHHHHHHHHHT---TSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 4566799999999999997 5 89999999999999999999999999999999988743
No 55
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.27 E-value=3.7e-12 Score=120.39 Aligned_cols=60 Identities=28% Similarity=0.350 Sum_probs=53.6
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
.+|+|..|+..++.+|+.||.. +|||+..+|..||..+||++.||.+||+|+|+|.|+..
T Consensus 97 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 97 PKKPRLVFTDVQRRTLHAIFKE---NKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ---CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 4566677999999999999999 89999999999999999999999999999999999854
No 56
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.27 E-value=3e-12 Score=105.95 Aligned_cols=59 Identities=20% Similarity=0.299 Sum_probs=53.2
Q ss_pred CCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 392 RPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 392 RkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
++|+.|+.+++.+|+.+|.. .+|||+..++..||+.+||++.||.+||+|+|.|.|+..
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~--~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNK--VNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHS--SCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHc--cCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 46667999999999999972 189999999999999999999999999999999988743
No 57
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.27 E-value=4.7e-12 Score=118.65 Aligned_cols=59 Identities=24% Similarity=0.450 Sum_probs=54.3
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCc
Q 005890 389 HAWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWK 450 (671)
Q Consensus 389 ~~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kK 450 (671)
.++|+|..|+..++.+|+.||.. +|||+..+|..||+.+||++.||.+||+|+|+|.||
T Consensus 92 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 92 KKRKRRTSFTPQAIEALNAYFEK---NPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 34455666999999999999998 999999999999999999999999999999999987
No 58
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.25 E-value=3.6e-12 Score=109.39 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=53.0
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcc
Q 005890 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKP 451 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp 451 (671)
.+|+|..|+.+++.+|+.+|.. ++||+..++..||..+||++.||.+||+|+|.|.||.
T Consensus 28 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 28 TKRQRTSYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp ---CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 4566777999999999999987 9999999999999999999999999999999998874
No 59
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.24 E-value=3.6e-12 Score=106.07 Aligned_cols=53 Identities=26% Similarity=0.563 Sum_probs=49.9
Q ss_pred CChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 397 LPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 397 Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
-+++++.+|+.+|.. ++||+..|+..||+.|||+..||.+||+|+|.|.|+..
T Consensus 11 ~~~~Ql~~LE~~F~~---~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQ---SQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHG---GGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 389999999999999 99999999999999999999999999999999988644
No 60
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.23 E-value=2.7e-11 Score=114.76 Aligned_cols=59 Identities=17% Similarity=0.295 Sum_probs=53.2
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcc
Q 005890 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKP 451 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp 451 (671)
++|+|+.|+..++.+|+.+|.. +|||+..++..||+.+||++.||.+||+|+|.|.||.
T Consensus 101 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 101 RRKKRTSIETNIRVALEKSFME---NQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ---CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCcCccccCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 4456667999999999999998 9999999999999999999999999999999999874
No 61
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.23 E-value=4.5e-12 Score=110.78 Aligned_cols=61 Identities=21% Similarity=0.274 Sum_probs=53.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 389 HAWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 389 ~~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
..+|+|..|+.+++.+|+.+|.. ++||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 93 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHF---NKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 93 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHh
Confidence 34566677999999999999987 99999999999999999999999999999999988754
No 62
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.23 E-value=1.2e-11 Score=105.67 Aligned_cols=61 Identities=15% Similarity=0.120 Sum_probs=53.9
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcc
Q 005890 390 AWRPQRGLPERAVTILRAWLFEHFL--HPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKP 451 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH~~--nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp 451 (671)
++|+|..|+.+++.+|+ -|.+++. ++||+..+|..||..+||++.||.+||+|+|.|.++.
T Consensus 17 ~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~s 79 (80)
T 1wh7_A 17 TKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPSS 79 (80)
T ss_dssp SSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCCC
T ss_pred CCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCCC
Confidence 45566679999999999 5777544 9999999999999999999999999999999998863
No 63
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.3e-11 Score=106.69 Aligned_cols=57 Identities=19% Similarity=0.364 Sum_probs=52.2
Q ss_pred CCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcc
Q 005890 392 RPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKP 451 (671)
Q Consensus 392 RkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp 451 (671)
++.++|+.+++.+|+.+|.. ++||+..++..||+.+||++.||.+||+|+|+|.++.
T Consensus 15 ~k~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~ 71 (89)
T 2dmp_A 15 QKFKEKTQGQVKILEDSFLK---SSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSM 71 (89)
T ss_dssp SCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTS
T ss_pred cccccCCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHH
Confidence 34455999999999999998 9999999999999999999999999999999987664
No 64
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.20 E-value=8.1e-11 Score=110.19 Aligned_cols=59 Identities=22% Similarity=0.320 Sum_probs=53.7
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcc
Q 005890 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKP 451 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp 451 (671)
++|+|..|+.+++.+|+.+|.. +|||+..++..||+.+||++.||.+||+|+|.|.||.
T Consensus 87 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 87 KRKRRTTISIAAKDALERHFGE---HSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCcCccHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 4556667999999999999998 9999999999999999999999999999999999874
No 65
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=2.3e-11 Score=99.66 Aligned_cols=53 Identities=15% Similarity=0.297 Sum_probs=49.6
Q ss_pred CCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCc
Q 005890 395 RGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWK 450 (671)
Q Consensus 395 R~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kK 450 (671)
..+.++++.+|+.+|.. ++||+..+|..||+.+||++.||.+||+|+|.|.++
T Consensus 8 ~~p~~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYAL---NAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCccHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 34679999999999987 999999999999999999999999999999999876
No 66
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=3e-11 Score=108.15 Aligned_cols=63 Identities=19% Similarity=0.163 Sum_probs=55.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHh---------------------CCChhhhhhhhhhhhhh
Q 005890 389 HAWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQT---------------------GLTRSQVSNWFINARVR 447 (671)
Q Consensus 389 ~~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~T---------------------GLS~kQVsNWFiNaRrR 447 (671)
.++|.|..|++.++.+|+.+|.. +|||+.++|..||..+ .|++.+|.+||+|+|+|
T Consensus 5 ~~Rr~Rt~ft~~ql~~Le~~F~~---~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 5 SSGRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 34556667999999999999988 8999999999999999 79999999999999999
Q ss_pred cCcchhh
Q 005890 448 LWKPMVE 454 (671)
Q Consensus 448 ~kKp~ie 454 (671)
.++....
T Consensus 82 ~kr~~~~ 88 (102)
T 2da6_A 82 EAFRQKL 88 (102)
T ss_dssp HHHHHHH
T ss_pred HHHhhHh
Confidence 8876533
No 67
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.15 E-value=2.6e-11 Score=115.68 Aligned_cols=60 Identities=18% Similarity=0.292 Sum_probs=51.3
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
++|+|+.|+..++.+|+.+|.. +|||+..+|..||+.+||++.||.+||+|+|.|.||..
T Consensus 99 ~rr~Rt~ft~~Ql~~LE~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 99 KRKKRTSIEVGVKGALESHFLK---CPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp -------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSC
T ss_pred CCCCceeccHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhcc
Confidence 4456667999999999999998 99999999999999999999999999999999998864
No 68
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.15 E-value=1.8e-11 Score=102.24 Aligned_cols=59 Identities=15% Similarity=0.153 Sum_probs=53.4
Q ss_pred CCCCCCCChhHHHHHHHHH-HHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 391 WRPQRGLPERAVTILRAWL-FEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 391 kRkrR~Lpk~~~~iLr~Wf-~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
.++++.++.+++.+|+..| .. ++||+..++..||+.+||++.||.+||+|+|.|.|+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~---~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSV---TKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 3556678889999999999 66 99999999999999999999999999999999998754
No 69
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.14 E-value=3.5e-11 Score=100.32 Aligned_cols=55 Identities=25% Similarity=0.372 Sum_probs=51.4
Q ss_pred CCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcchh
Q 005890 396 GLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPMV 453 (671)
Q Consensus 396 ~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~i 453 (671)
.++..++..|+.+|.. ++||+..+|..||+.+||++.||.+||+|+|.|.||...
T Consensus 10 ~~t~~ql~~LE~~F~~---~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 10 HMSHTQVIELERKFSH---QKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred cCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 3789999999999988 999999999999999999999999999999999988653
No 70
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.09 E-value=6.8e-11 Score=104.89 Aligned_cols=61 Identities=21% Similarity=0.227 Sum_probs=52.6
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHH------------------hC---CChhhhhhhhhhhhhhcC
Q 005890 391 WRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQ------------------TG---LTRSQVSNWFINARVRLW 449 (671)
Q Consensus 391 kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~------------------TG---LS~kQVsNWFiNaRrR~k 449 (671)
+|+|..|++.++.+|+.+|.. +|||+..+|..||.. +| |+..||.+||+|+|++.+
T Consensus 10 rr~Rt~ft~~Ql~~LE~~F~~---~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k 86 (99)
T 1lfb_A 10 RRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 86 (99)
T ss_dssp ---CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCcCcCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHH
Confidence 455566999999999999988 999999999999999 88 999999999999999988
Q ss_pred cchhh
Q 005890 450 KPMVE 454 (671)
Q Consensus 450 Kp~ie 454 (671)
+....
T Consensus 87 ~k~~~ 91 (99)
T 1lfb_A 87 FRHKL 91 (99)
T ss_dssp CCC--
T ss_pred Hhchh
Confidence 76543
No 71
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.06 E-value=6.2e-11 Score=111.89 Aligned_cols=59 Identities=24% Similarity=0.369 Sum_probs=53.6
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcc
Q 005890 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKP 451 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp 451 (671)
++|+|..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.||.
T Consensus 96 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 96 RKRKRTSIENRVRWSLETMFLK---SPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp SCCCCCCCCHHHHHHHHTTTTT---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCcccCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 4556667999999999999987 9999999999999999999999999999999998873
No 72
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.04 E-value=3.7e-10 Score=94.88 Aligned_cols=62 Identities=19% Similarity=0.349 Sum_probs=55.9
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcc
Q 005890 388 HHAWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKP 451 (671)
Q Consensus 388 ~~~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp 451 (671)
..++|.|+.|+.++..+|+..|..- ++||+.++++.||.+|||++.+|..||+|+|.-.+.+
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~--~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~~ 66 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDV--GLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHS 66 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHH--CSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCSS
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecCC
Confidence 4567788889999999999999874 7999999999999999999999999999999877653
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.02 E-value=4.2e-10 Score=110.56 Aligned_cols=57 Identities=21% Similarity=0.250 Sum_probs=51.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhC---------------------CChhhhhhhhhhhhhhcC
Q 005890 391 WRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTG---------------------LTRSQVSNWFINARVRLW 449 (671)
Q Consensus 391 kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TG---------------------LS~kQVsNWFiNaRrR~k 449 (671)
+|.|..|++.++.+|+.+|.. +|||+..+|..||..++ |+..||.+||+|+|+|.+
T Consensus 116 rr~R~~ft~~ql~~Le~~F~~---~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k 192 (194)
T 1ic8_A 116 RRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 192 (194)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH---HCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhh
Confidence 455556999999999999998 89999999999999999 999999999999999987
Q ss_pred c
Q 005890 450 K 450 (671)
Q Consensus 450 K 450 (671)
.
T Consensus 193 ~ 193 (194)
T 1ic8_A 193 F 193 (194)
T ss_dssp -
T ss_pred c
Confidence 4
No 74
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.02 E-value=1.7e-10 Score=95.30 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcc
Q 005890 399 ERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKP 451 (671)
Q Consensus 399 k~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp 451 (671)
..+..+|+..|..+ ++||+..++..||+++||++.||.+||+|+|.|.|+.
T Consensus 9 ~~~~~~LE~~F~~~--~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAI--TKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTT--CSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHc--CCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 34689999999432 8999999999999999999999999999999999864
No 75
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.90 E-value=8.3e-10 Score=113.86 Aligned_cols=53 Identities=28% Similarity=0.433 Sum_probs=49.9
Q ss_pred CCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcC
Q 005890 394 QRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLW 449 (671)
Q Consensus 394 rR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~k 449 (671)
++.|.+.++..|+++|.. +|||+..+|..||++|||+++||++||+|||+|.|
T Consensus 369 ~~~~~~~q~~~Le~~f~~---~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 369 AAAISPQARAFLEQVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HCSSCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhcchHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 456899999999999988 99999999999999999999999999999999975
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.88 E-value=1.6e-09 Score=108.36 Aligned_cols=57 Identities=21% Similarity=0.269 Sum_probs=51.3
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhC---------------------CChhhhhhhhhhhhhhc
Q 005890 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTG---------------------LTRSQVSNWFINARVRL 448 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TG---------------------LS~kQVsNWFiNaRrR~ 448 (671)
.+|.|..|++.++.+|+.||.. +|||+..+|..||+.|+ |+..||.|||+|+|++.
T Consensus 142 ~RR~R~~ft~~ql~~Le~~F~~---~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 142 MRRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 3455556999999999999998 99999999999999988 89999999999999986
Q ss_pred C
Q 005890 449 W 449 (671)
Q Consensus 449 k 449 (671)
.
T Consensus 219 ~ 219 (221)
T 2h8r_A 219 A 219 (221)
T ss_dssp C
T ss_pred h
Confidence 3
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=9.6e-09 Score=86.61 Aligned_cols=47 Identities=19% Similarity=0.415 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhc
Q 005890 399 ERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRL 448 (671)
Q Consensus 399 k~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~ 448 (671)
++++.+|++.|.. +|||+.+|+..||..+||+++.|+.||+|+|.+.
T Consensus 14 k~ql~~Lk~yF~~---n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 14 KDHMSVLKAYYAM---NMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp THHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHHHHHHhhccccc
Confidence 6789999999999 9999999999999999999999999999999753
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=96.37 E-value=0.00071 Score=50.60 Aligned_cols=20 Identities=30% Similarity=0.586 Sum_probs=17.5
Q ss_pred hhhhhhhhhhhhhcCcchhh
Q 005890 435 SQVSNWFINARVRLWKPMVE 454 (671)
Q Consensus 435 kQVsNWFiNaRrR~kKp~ie 454 (671)
.||.+||+|+|.|.||...+
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 48999999999999997654
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.95 E-value=0.061 Score=45.39 Aligned_cols=44 Identities=25% Similarity=0.453 Sum_probs=39.7
Q ss_pred CChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 005890 397 LPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFIN 443 (671)
Q Consensus 397 Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiN 443 (671)
.++-.+++|+++|.+ |....+++-..|+.+++|+..||..||.-
T Consensus 13 ~~p~~~e~L~~Yy~~---hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 13 PPPPDIQPLERYWAA---HQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCCCHHHHHHHHH---TCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHH---hcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 356668999999999 78899999999999999999999999964
No 80
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=72.68 E-value=33 Score=29.74 Aligned_cols=82 Identities=15% Similarity=0.293 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCchhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCccccC
Q 005890 280 QIKKAKLVNMLDEVEQRYKQYHHQMQVVVSAFEQAAGFGSAKSYTALALRTISKQFRCLKDAISAQIKATSKKLGEDDCL 359 (671)
Q Consensus 280 q~kk~kLl~ml~EV~~rY~qy~~qm~~v~ssFe~~ag~~~a~~yt~lal~~iSr~Fr~L~daI~~Qi~a~~~~l~e~d~~ 359 (671)
-....+.++++.|+|.||.....++...+..|-...|--.+.+--.. ++.|.+.|..+...-.+.+..+....
T Consensus 17 P~El~r~~~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~-l~~I~~~~~~~~~l~dEKv~lA~~~~------ 89 (104)
T 4afl_A 17 PFELQRNFQLMRDLDQRTEDLKAEIDKLATEYMSSARSLSSEEKLAL-LKQIQEAYGKCKEFGDDKVQLAMQTY------ 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 34667788999999999999999988888888765453333333333 47888888888877777777776443
Q ss_pred CCcccCcchhhhhHHHHH
Q 005890 360 GAKAEGSRLRFIDHQIRQ 377 (671)
Q Consensus 360 gg~~e~~~l~~vD~~lrq 377 (671)
..||+|+++
T Consensus 90 ---------dlvdkhirr 98 (104)
T 4afl_A 90 ---------EMVDKHIRR 98 (104)
T ss_dssp ---------HHHHHHHHH
T ss_pred ---------HHHHHHHHH
Confidence 358888764
No 81
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=63.31 E-value=5.5 Score=33.05 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=42.5
Q ss_pred CCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcchhhh
Q 005890 396 GLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPMVEE 455 (671)
Q Consensus 396 ~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~iee 455 (671)
.||+..+.+|...|.-.-... -.-..+|..+|++...|.+|...+++++++.+...
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~----~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l~~~ 73 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKP----KTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSK 73 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSC----CCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSSH
T ss_pred hCCHHHHHHHHHHHccCCCCC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 589999999987765100012 23467899999999999999999999999876544
No 82
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=62.50 E-value=14 Score=32.19 Aligned_cols=49 Identities=22% Similarity=0.249 Sum_probs=37.9
Q ss_pred CCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhh
Q 005890 392 RPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARV 446 (671)
Q Consensus 392 RkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRr 446 (671)
++|+.|+.+.+..+-.++.+ ++.++ ...+|+..|++...|..|..+++.
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~---~g~~~---~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEE---NPDLR---KGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHH---CTTSC---HHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred CcceeCCHHHHHHHHHHHHH---CCCCc---HHHHHHHhCCCHHHHHHHHhchhh
Confidence 35667999998777777655 56654 236899999999999999877654
No 83
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=61.20 E-value=3.7 Score=34.28 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=40.7
Q ss_pred CCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 396 GLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 396 ~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
.||+..+.+|.-.|.+ .| .-.++|+.+|++...|.++...+|+++++.+
T Consensus 37 ~L~~~~r~vl~l~~~~----g~----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYR----GW----STAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp TSCHHHHHHHHHHHTS----CC----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 5899999999876655 22 3468999999999999999999999998755
No 84
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=55.71 E-value=7.9 Score=31.87 Aligned_cols=54 Identities=17% Similarity=0.111 Sum_probs=43.3
Q ss_pred CCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcchhhhhh
Q 005890 395 RGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPMVEEMY 457 (671)
Q Consensus 395 R~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~iee~~ 457 (671)
..|++..+++|..+ .+ .+ .-.++|+.+|++...|.++..+.|++++.....++.
T Consensus 20 ~~Lt~~e~~vl~l~-~~----g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l~ 73 (82)
T 1je8_A 20 NQLTPRERDILKLI-AQ----GL----PNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAA 73 (82)
T ss_dssp GGSCHHHHHHHHHH-TT----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred ccCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 35999999999874 33 22 356899999999999999999999999887665544
No 85
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=55.64 E-value=4.9 Score=35.17 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=39.0
Q ss_pred CCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 396 GLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 396 ~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
.||+..+.+|. .+.+ .| .-.++|+.+|++...|.++...+|+++++-+
T Consensus 109 ~L~~~~r~v~~-~~~~----g~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l 156 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR----GY----SYREIATILSKNLKSIDNTIQRIRKKSEEWI 156 (164)
T ss_dssp HSCHHHHHHHH-HHTT----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc----CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 57899999998 4443 33 3467999999999999999999999998755
No 86
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=54.57 E-value=11 Score=29.43 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=43.0
Q ss_pred CCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcchhhhh
Q 005890 392 RPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPMVEEM 456 (671)
Q Consensus 392 RkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~iee~ 456 (671)
+....|++....+|..+ .+ .+ .-.++|+.+|++...|..++...+.+++.....++
T Consensus 7 ~~~~~L~~~e~~il~~~-~~----g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~~~~~ 62 (74)
T 1fse_A 7 QSKPLLTKREREVFELL-VQ----DK----TTKEIASELFISEKTVRNHISNAMQKLGVKGRSQA 62 (74)
T ss_dssp -CCCCCCHHHHHHHHHH-TT----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHH
T ss_pred CCCCCCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHH
Confidence 34556999999999774 33 33 34679999999999999999999999887654443
No 87
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=54.40 E-value=5.7 Score=30.68 Aligned_cols=49 Identities=14% Similarity=0.018 Sum_probs=39.3
Q ss_pred CCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 396 GLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 396 ~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
.||+..+.+|...|.+ .+ .-.++|+.+|++...|.+|...+|.++++-+
T Consensus 15 ~L~~~~r~il~l~~~~----g~----s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 15 DLTTDQREALLLTQLL----GL----SYADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp SSCHHHHHHHHHHHTS----CC----CHHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred hCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 5899999999876654 22 2367999999999999999999999998755
No 88
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=53.35 E-value=8.4 Score=30.24 Aligned_cols=56 Identities=25% Similarity=0.316 Sum_probs=41.5
Q ss_pred CCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcchhhh
Q 005890 396 GLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPMVEE 455 (671)
Q Consensus 396 ~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~iee 455 (671)
.||+..+.+|...|.-.-...+ .-.++|+.+|++...|.++...+++++++....+
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~----s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~~~ 60 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDY----TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSE 60 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHGGGSCCGGG
T ss_pred cCCHHHHHHHHHHHccCCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999877611000122 2367999999999999999999999998876443
No 89
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=53.26 E-value=7.1 Score=31.00 Aligned_cols=54 Identities=15% Similarity=0.143 Sum_probs=42.1
Q ss_pred CCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcchhhhhhH
Q 005890 396 GLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYM 458 (671)
Q Consensus 396 ~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~iee~~~ 458 (671)
.|++..+.+|.-+ .+ .+ .-.++|+.+|++...|.++....+.+++.....++..
T Consensus 16 ~L~~~e~~vl~l~-~~----g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~~~~l~~ 69 (79)
T 1x3u_A 16 TLSERERQVLSAV-VA----GL----PNKSIAYDLDISPRTVEVHRANVMAKMKAKSLPHLVR 69 (79)
T ss_dssp HHCHHHHHHHHHH-TT----TC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTCCSHHHHHH
T ss_pred hCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 3688888888764 32 32 2358999999999999999999999999877665543
No 90
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=51.97 E-value=21 Score=27.43 Aligned_cols=46 Identities=11% Similarity=0.155 Sum_probs=31.8
Q ss_pred CCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 005890 394 QRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFIN 443 (671)
Q Consensus 394 rR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiN 443 (671)
++.|+.+.+......+.. .++.......+|+..|++...|.+|...
T Consensus 3 r~~ys~efK~~~~~~~~~----g~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN----DNDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH----CTTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHc----CCCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 457888887666554433 2221223679999999999999999654
No 91
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=50.65 E-value=23 Score=29.43 Aligned_cols=44 Identities=23% Similarity=0.356 Sum_probs=30.8
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhh
Q 005890 391 WRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFI 442 (671)
Q Consensus 391 kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFi 442 (671)
+++++.|+.+.+...-.++.. -+ -...+|+.+|++...|.+|..
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~----g~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHD----GE----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHH----TC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHC----CC----CHHHHHHHHCcCHHHHHHHHH
Confidence 345667988875444444433 11 256889999999999999974
No 92
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=49.61 E-value=1.2e+02 Score=25.65 Aligned_cols=40 Identities=13% Similarity=0.202 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005890 275 QRQELQIKKAKLVNMLDEVEQRYKQYHHQMQVVVSAFEQA 314 (671)
Q Consensus 275 er~E~q~kk~kLl~ml~EV~~rY~qy~~qm~~v~ssFe~~ 314 (671)
|-..++..++.|-..+.+++.||..-..+++..+...|..
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~e 41 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDE 41 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356778899999999999999999999999999998876
No 93
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=49.51 E-value=47 Score=29.10 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005890 278 ELQIKKAKLVNMLDEVEQRYKQYHHQMQVVVSAFEQA 314 (671)
Q Consensus 278 E~q~kk~kLl~ml~EV~~rY~qy~~qm~~v~ssFe~~ 314 (671)
.++.+++.|...|.|++.+|..-..+++.++...|..
T Consensus 16 ~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~e 52 (95)
T 3mov_A 16 QGQKESRACLERIQELEDLLAKEKDNSRRMLTDKERE 52 (95)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999999999999999998876
No 94
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=48.66 E-value=17 Score=25.30 Aligned_cols=43 Identities=7% Similarity=0.139 Sum_probs=29.4
Q ss_pred CCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhh
Q 005890 395 RGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINAR 445 (671)
Q Consensus 395 R~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaR 445 (671)
+.|+++.+..+...+.+ .+ ....+|+.+|++...|..|....+
T Consensus 4 ~~l~~~~~~~i~~~~~~----g~----s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLL----NV----SLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp CCCCHHHHHHHHHHHHT----TC----CHHHHHHHHTCCHHHHHHHHHCST
T ss_pred CCCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHhhHH
Confidence 35777776444444433 22 256899999999999999986543
No 95
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=48.07 E-value=8.1 Score=30.77 Aligned_cols=55 Identities=16% Similarity=0.037 Sum_probs=40.6
Q ss_pred CCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcC-cchh
Q 005890 395 RGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLW-KPMV 453 (671)
Q Consensus 395 R~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~k-Kp~i 453 (671)
..||+..+.+|...|.-.-...+ .-.++|+.+|++...|.+|...++.+++ ....
T Consensus 9 ~~L~~~er~il~l~~~l~~~~~~----s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~~ 64 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGREH----TLEEVGAYFGVTRERIRQIENKALRKLKYHESR 64 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC-
T ss_pred HhCCHHHHHHHHHHHhcccCCCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHhhHhh
Confidence 35899999999877651000122 2358999999999999999999999998 5543
No 96
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=47.82 E-value=10 Score=32.04 Aligned_cols=54 Identities=20% Similarity=0.201 Sum_probs=41.7
Q ss_pred CCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcchhhhhh
Q 005890 395 RGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPMVEEMY 457 (671)
Q Consensus 395 R~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~iee~~ 457 (671)
..|++..+++|... .+ .+ .-.++|+.+|++...|.++..+.|+|++.....++.
T Consensus 26 ~~Lt~~e~~vl~l~-~~----g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l~ 79 (95)
T 3c57_A 26 SGLTDQERTLLGLL-SE----GL----TNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAA 79 (95)
T ss_dssp -CCCHHHHHHHHHH-HT----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCC--
T ss_pred hcCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 36999999999875 33 22 237899999999999999999999999876554443
No 97
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=46.33 E-value=9.8 Score=31.63 Aligned_cols=54 Identities=22% Similarity=0.182 Sum_probs=42.4
Q ss_pred CCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcchhhhhh
Q 005890 395 RGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPMVEEMY 457 (671)
Q Consensus 395 R~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~iee~~ 457 (671)
..|++..+.+|.-+ .+ .+.. .++|+.+|++...|.++..+.|++++.....++-
T Consensus 28 ~~Lt~~e~~vl~l~-~~----g~s~----~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l~ 81 (91)
T 2rnj_A 28 EMLTEREMEILLLI-AK----GYSN----QEIASASHITIKTVKTHVSNILSKLEVQDRTQAV 81 (91)
T ss_dssp GGCCSHHHHHHHHH-HT----TCCT----THHHHHHTCCHHHHHHHHHHHHHHTTCCSSHHHH
T ss_pred hcCCHHHHHHHHHH-Hc----CCCH----HHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHHH
Confidence 35999999999764 43 3322 4789999999999999999999999887655543
No 98
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=44.23 E-value=19 Score=31.89 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=41.2
Q ss_pred CCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcchh
Q 005890 396 GLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPMV 453 (671)
Q Consensus 396 ~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~i 453 (671)
.||+..+.++...+.+ .+ .-.++|+.+|++...|.+|...+|.++++-+.
T Consensus 22 ~L~~~~r~vl~l~y~~----g~----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~ 71 (113)
T 1s7o_A 22 LLTDKQMNYIELYYAD----DY----SLAEIADEFGVSRQAVYDNIKRTEKILETYEM 71 (113)
T ss_dssp GSCHHHHHHHHHHHHT----CC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999877665 22 24689999999999999999999999887553
No 99
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=42.63 E-value=42 Score=28.94 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=43.8
Q ss_pred CCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcchhhhhhH
Q 005890 394 QRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYM 458 (671)
Q Consensus 394 rR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~iee~~~ 458 (671)
...|++..+++|..++ +- + .-.++|+.+|++...|.++..+.++|+.-....++-.
T Consensus 32 ~~~Lt~re~~Vl~l~~-~G----~----s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~~r~elv~ 87 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFA-EG----F----LVTEIAKKLNRSIKTISSQKKSAMMKLGVDNDIALLN 87 (99)
T ss_dssp SSSCCHHHHHHHHHHH-HT----C----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred cCCCCHHHHHHHHHHH-cC----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 4569999999996654 42 2 2378999999999999999999999988766555443
No 100
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=42.24 E-value=9.1 Score=35.68 Aligned_cols=49 Identities=27% Similarity=0.322 Sum_probs=40.9
Q ss_pred CCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 396 GLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 396 ~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
.||+..+.+|...|.+ .+ .-.++|+.+|++...|..+...+|+++++.+
T Consensus 187 ~L~~~~r~vl~l~~~~----g~----s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l 235 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYE----EL----PAKEVAKILETSVSRVSQLKAKALERLREML 235 (239)
T ss_dssp TSCHHHHHHHHHHHTS----CC----CHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhc----CC----CHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 5899999999877654 33 2467999999999999999999999998754
No 101
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=39.72 E-value=2e+02 Score=31.20 Aligned_cols=70 Identities=14% Similarity=0.266 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhhhhcCCchhhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005890 277 QELQIKKAKLVNMLDEVEQRYKQYHHQMQVVVSA----FEQAAGFGSAKSYTALALRTISKQFRCLKDAISAQIKAT 349 (671)
Q Consensus 277 ~E~q~kk~kLl~ml~EV~~rY~qy~~qm~~v~ss----Fe~~ag~~~a~~yt~lal~~iSr~Fr~L~daI~~Qi~a~ 349 (671)
+++..++.+|...|+++.+-++.-+.-+..+..- |..+- .+-..|-.+ ...+++|+..|++.|.+||..+
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~--dndn~~~e~-s~eLe~~i~~lk~~V~~q~~~i 136 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKAN--NNDNTFKQI-NEDLRSRIEILRRKVIEQVQRI 136 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc--cchHHHHHH-HHHHHHHHHHHHHHHHHHhHHH
Confidence 6788899999999999988886655444433332 22222 222334443 4678888888999888887744
No 102
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=37.76 E-value=21 Score=31.39 Aligned_cols=51 Identities=14% Similarity=0.123 Sum_probs=41.7
Q ss_pred CCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcchhh
Q 005890 396 GLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPMVE 454 (671)
Q Consensus 396 ~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ie 454 (671)
.||+..+.+|...+.+ .+ .-.++|+.+|++...|.++...+|.++++-+..
T Consensus 25 ~L~~~~r~vl~l~~~~----g~----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~ 75 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLE----DY----SLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKK 75 (113)
T ss_dssp GSCHHHHHHHHHHHTS----CC----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999877654 22 236899999999999999999999999876543
No 103
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=33.15 E-value=14 Score=33.54 Aligned_cols=49 Identities=14% Similarity=0.143 Sum_probs=39.7
Q ss_pred CCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 396 GLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 396 ~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
.||+..+.+|.-.+.+ .++ -.++|+.+|++...|.++...+|+++++.+
T Consensus 140 ~L~~~~r~vl~l~~~~----g~s----~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 140 SLPEDLRMAITLRELD----GLS----YEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp HSCHHHHHHHHHHHTT----CCC----HHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHhHHHHHc----CCC----HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 4788899998776654 222 357999999999999999999999998754
No 104
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=31.75 E-value=35 Score=33.40 Aligned_cols=54 Identities=20% Similarity=0.102 Sum_probs=44.1
Q ss_pred CCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcchhhhhh
Q 005890 395 RGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPMVEEMY 457 (671)
Q Consensus 395 R~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~iee~~ 457 (671)
..||+..+.+|.-.+ + .+ .-.++|+.+|++..-|.+...++|++++.....++-
T Consensus 196 ~~L~~~erevl~L~~-~----G~----s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~~~~~~ 249 (258)
T 3clo_A 196 NILSEREKEILRCIR-K----GL----SSKEIAATLYISVNTVNRHRQNILEKLSVGNSIEAC 249 (258)
T ss_dssp TSSCHHHHHHHHHHH-T----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred ccCCHHHHHHHHHHH-c----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 469999999998763 3 22 346799999999999999999999999987665544
No 105
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=31.18 E-value=30 Score=24.48 Aligned_cols=41 Identities=20% Similarity=0.206 Sum_probs=27.5
Q ss_pred CCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhh
Q 005890 396 GLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINA 444 (671)
Q Consensus 396 ~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNa 444 (671)
.|+.+....+...+.+ .. ....+|+.+|++..-|..|+...
T Consensus 5 ~~~~~~~~~i~~l~~~----g~----s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 5 AINKHEQEQISRLLEK----GH----PRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp SSCTTHHHHHHHHHHT----TC----CHHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCCHHHHHHHHHHHHc----CC----CHHHHHHHHCCCHHHHHHHHHHc
Confidence 4655554444444433 21 35689999999999999998643
No 106
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=30.71 E-value=1.6e+02 Score=27.90 Aligned_cols=65 Identities=22% Similarity=0.292 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCchhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 005890 275 QRQELQIKKAKLVNMLDEVEQRYKQYHHQMQVVVSAFEQAAGFGSAKSYTALALRTISKQFRCLKDAISAQIKATSK 351 (671)
Q Consensus 275 er~E~q~kk~kLl~ml~EV~~rY~qy~~qm~~v~ssFe~~ag~~~a~~yt~lal~~iSr~Fr~L~daI~~Qi~a~~~ 351 (671)
=..+.+.-+.+|...++||-.|-..|.++++.++.. |+.-.-+.+.-.+..|+..+...+.+..+
T Consensus 93 l~~~~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~~------------~~EelR~kl~P~~eeL~~~~~~~~eeLr~ 157 (165)
T 1gs9_A 93 LSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQ------------STEELRVRLASHLRKLRKRLLRDADDLQK 157 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 456788888999999999999999999999888764 22222344555555666666555554443
No 107
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=30.52 E-value=68 Score=26.64 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhh
Q 005890 401 AVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINAR 445 (671)
Q Consensus 401 ~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaR 445 (671)
.++.+.+|+.+|+..|-++ -..||+.+|+++..+...|.-.-
T Consensus 3 ~~~~i~~~i~~~~~~~~~~---~~~lA~~~~~S~~~l~r~fk~~~ 44 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFT---LSVLSEKLDLSSGYLSIMFKKNF 44 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCC---HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCC---HHHHHHHHCcCHHHHHHHHHHHH
Confidence 4667788999987775455 45699999999999999997663
No 108
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=30.33 E-value=42 Score=29.14 Aligned_cols=56 Identities=23% Similarity=0.259 Sum_probs=42.6
Q ss_pred CCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcchhhh
Q 005890 396 GLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPMVEE 455 (671)
Q Consensus 396 ~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~iee 455 (671)
.||+..+.++.-.|...-..+ -.-.++|..+|++...|.++...+++++++.+..+
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~----~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~~~ 74 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTD----YTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSE 74 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999987765210012 23467899999999999999999999998876543
No 109
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=30.11 E-value=11 Score=33.96 Aligned_cols=48 Identities=25% Similarity=0.304 Sum_probs=38.5
Q ss_pred CCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcc
Q 005890 396 GLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKP 451 (671)
Q Consensus 396 ~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp 451 (671)
.||+..+.+|.-.+.+. .+| .++|+.+|++...|.+|...+|+++++.
T Consensus 135 ~L~~~~r~vl~l~~~~g--~s~------~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 135 RLPEAQRALIERAFFGD--LTH------RELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp TSCHHHHHHHHHHHHSC--CSS------CCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC--CCH------HHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 48899999998766653 222 3689999999999999999999998753
No 110
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=30.11 E-value=1.6e+02 Score=33.26 Aligned_cols=69 Identities=19% Similarity=0.314 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhhhcCCchhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 005890 275 QRQELQIKKAKLVNMLDEVEQRYKQYHHQMQVVVS----AFEQAAGFGSAKSYTALALRTISKQFRCLKDAISAQI 346 (671)
Q Consensus 275 er~E~q~kk~kLl~ml~EV~~rY~qy~~qm~~v~s----sFe~~ag~~~a~~yt~lal~~iSr~Fr~L~daI~~Qi 346 (671)
+-+++..++.+|...|+++.+.++.-+..++.+.. .+..+. ..-..|..+. .-+++++-.|+..|..||
T Consensus 58 qErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~--dNdNtynE~S-~ELRRrIqyLKekVdnQl 130 (562)
T 3ghg_A 58 VNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN--NRDNTYNRVS-EDLRSRIEVLKRKVIEKV 130 (562)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH--HHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh--ccchhHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 34567778899999999998887654444444333 333333 2233444433 244555555666665554
No 111
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=27.84 E-value=1.1e+02 Score=25.32 Aligned_cols=46 Identities=11% Similarity=0.033 Sum_probs=28.2
Q ss_pred CCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCC-------Chhhhhhhhhh
Q 005890 395 RGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGL-------TRSQVSNWFIN 443 (671)
Q Consensus 395 R~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGL-------S~kQVsNWFiN 443 (671)
+.++++....+.+++.+ +|.-+..+........|+ +...|..|+..
T Consensus 74 ~~l~~~~~~~i~~~~~~---~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 74 RIATPEIENRIEEYKRS---SPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRG 126 (128)
T ss_dssp CSSCSTHHHHHHHTTTT---CTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC--
T ss_pred CcCCHHHHHHHHHHHHh---CcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHHh
Confidence 45777777777777655 566565544333223374 88889888753
No 112
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=27.65 E-value=1.2e+02 Score=26.08 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=38.9
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhCCCC-CCHHHH----HHHHHHhCCChhhh-hhhhhhhhhhc
Q 005890 391 WRPQRGLPERAVTILRAWLFEHFLHPY-PKDSDK----QQLAKQTGLTRSQV-SNWFINARVRL 448 (671)
Q Consensus 391 kRkrR~Lpk~~~~iLr~Wf~eH~~nPY-PS~~EK----~~LA~~TGLS~kQV-sNWFiNaRrR~ 448 (671)
+|.++.+.++.-..|-.|+.+...... ++...- ..|+...|++.-.+ ..|+.+-.+|.
T Consensus 67 kr~r~~~~~~~E~~L~~Wi~~~~~~g~pvs~~~I~~kA~~i~~~~g~~~f~~S~gWl~~F~~Rh 130 (131)
T 1hlv_A 67 KTNKLSPYDKLEGLLIAWFQQIRAAGLPVKGIILKEKALRIAEELGMDDFTASNGWLDRFRRRR 130 (131)
T ss_dssp CCCCCCTTHHHHHHHHHHHHHHGGGTCCCCHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHT
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhc
Confidence 445556788889999999987643332 565444 35666677764444 47998888775
No 113
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=26.95 E-value=3.5e+02 Score=24.34 Aligned_cols=39 Identities=31% Similarity=0.315 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005890 276 RQELQIKKAKLVNMLDEVEQRYKQYHHQMQVVVSAFEQA 314 (671)
Q Consensus 276 r~E~q~kk~kLl~ml~EV~~rY~qy~~qm~~v~ssFe~~ 314 (671)
-..++..++.|-..|.+++.||..-..+++..+...|..
T Consensus 54 l~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~e 92 (131)
T 3tnu_A 54 LQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQ 92 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556678888999999999999999999999998876
No 114
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=26.86 E-value=66 Score=29.11 Aligned_cols=52 Identities=13% Similarity=0.152 Sum_probs=37.1
Q ss_pred CCCCCCCChhHHHHHHHHH-HHhhCCCCCCHHHHHHHHH-Hh--CCChhhhhhhhhhhh
Q 005890 391 WRPQRGLPERAVTILRAWL-FEHFLHPYPKDSDKQQLAK-QT--GLTRSQVSNWFINAR 445 (671)
Q Consensus 391 kRkrR~Lpk~~~~iLr~Wf-~eH~~nPYPS~~EK~~LA~-~T--GLS~kQVsNWFiNaR 445 (671)
+++|+.|+-+++..|..|+ .+ ||-.+..+-...|+ +. +++...|+.|..|+-
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~---~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~ 61 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQL---QNRSGQQDLIEWFREKFGKDISQPSVSQILSSKY 61 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSS---SSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHH
Confidence 5677789999999999887 44 67655444333222 67 789999999987643
No 115
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=26.80 E-value=2.6e+02 Score=26.13 Aligned_cols=30 Identities=13% Similarity=0.070 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005890 278 ELQIKKAKLVNMLDEVEQRYKQYHHQMQVV 307 (671)
Q Consensus 278 E~q~kk~kLl~ml~EV~~rY~qy~~qm~~v 307 (671)
+++.-+.+|+....++..+.....+.|..-
T Consensus 36 ql~~fr~~L~~~k~eL~~~l~~~~~~~~~~ 65 (151)
T 1tjl_A 36 QLAHFRRILEAWRNQLRDEVDRTVTHMQDE 65 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 555667788888888888888877777643
No 116
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=25.96 E-value=60 Score=27.30 Aligned_cols=54 Identities=19% Similarity=0.156 Sum_probs=41.7
Q ss_pred CCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcchhhhh
Q 005890 394 QRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPMVEEM 456 (671)
Q Consensus 394 rR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~iee~ 456 (671)
...|++..+++|+-.. + .+ .-.++|+.+|++...|.+...+.++|+.-....++
T Consensus 27 ~~~Lt~rE~~Vl~l~~-~----G~----s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~~r~~l 80 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE-K----GF----TNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEA 80 (90)
T ss_dssp --CCCHHHHHHHHHHH-T----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred ccCCCHHHHHHHHHHH-c----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHH
Confidence 4469999999997654 3 22 35789999999999999999999999876554444
No 117
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=25.58 E-value=44 Score=25.08 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=29.4
Q ss_pred HHHHHHhCCChhhhhhhhhhhhhhcCcchhhhhh
Q 005890 424 QQLAKQTGLTRSQVSNWFINARVRLWKPMVEEMY 457 (671)
Q Consensus 424 ~~LA~~TGLS~kQVsNWFiNaRrR~kKp~iee~~ 457 (671)
.++|+.+|++...|.++..+.+.+++.....++-
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~~~~~~l~ 50 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQVHKVTELL 50 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCCCCHHHHH
Confidence 5899999999999999999999999887655543
No 118
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=25.43 E-value=1.7e+02 Score=24.91 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005890 277 QELQIKKAKLVNMLDEVEQRYKQYHHQMQVVVSAFEQA 314 (671)
Q Consensus 277 ~E~q~kk~kLl~ml~EV~~rY~qy~~qm~~v~ssFe~~ 314 (671)
..++..++.|-..|.+++.||..-..+++..+...|..
T Consensus 6 e~L~~q~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~e 43 (86)
T 1x8y_A 6 SQLQCQLAAKEAKLRDLEDSLARERDTSRRLLAEKERE 43 (86)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677788999999999999999999999998866
No 119
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=25.24 E-value=1.4e+02 Score=27.74 Aligned_cols=71 Identities=11% Similarity=0.206 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhhhhhcCCchhhhHHHHHHHHHHHHhHHHHHHHH
Q 005890 272 TTAQRQELQIKKAKLVNMLDEVEQRYKQY---HHQMQVVVSAFEQAAGFGSAKSYTALALRTISKQFRCLKDAISA 344 (671)
Q Consensus 272 s~~er~E~q~kk~kLl~ml~EV~~rY~qy---~~qm~~v~ssFe~~ag~~~a~~yt~lal~~iSr~Fr~L~daI~~ 344 (671)
|-.|=++++.+=.+|..-|-+.+.++++. .+++...+.++.-..+. ..|||.+....|.+.++.++..|..
T Consensus 43 sleEI~~L~~~He~F~~~L~~a~~e~~~i~~i~~el~~~~~~~~~~~~~--~npYT~it~~~l~~~W~~l~~li~~ 116 (129)
T 1wlx_A 43 TIEEIEGLISAHDQFKSTLPDADREREAILAIHKEAQRIAESNHIKLSG--SNPYTTVTPQIINSKWEKVQQLVPK 116 (129)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSS--SCSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCC--CCCCccchHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999876 35666666665543222 5599999889999988888887754
No 120
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=24.62 E-value=3.8e+02 Score=23.98 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005890 275 QRQELQIKKAKLVNMLDEVEQRYKQYHHQMQVVVSAFEQA 314 (671)
Q Consensus 275 er~E~q~kk~kLl~ml~EV~~rY~qy~~qm~~v~ssFe~~ 314 (671)
|-..++..++.|-..|.+++.||..-..+++..+...|..
T Consensus 51 el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~e 90 (129)
T 3tnu_B 51 EIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEA 90 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345566778899999999999999999999999988876
No 121
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=23.87 E-value=3e+02 Score=24.02 Aligned_cols=49 Identities=8% Similarity=0.055 Sum_probs=31.6
Q ss_pred CCCCChhHHHHHHHHHHHhhCCCCCCHHHHHH-HHHHh----C--CChhhhhhhhhhhh
Q 005890 394 QRGLPERAVTILRAWLFEHFLHPYPKDSDKQQ-LAKQT----G--LTRSQVSNWFINAR 445 (671)
Q Consensus 394 rR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~-LA~~T----G--LS~kQVsNWFiNaR 445 (671)
++.++.+....+.+++.+ +|.-+..+... |..+. | ++...|..|+....
T Consensus 88 ~~~~~~~~~~~I~~~~~~---~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~~ 143 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQ---NPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTKV 143 (149)
T ss_dssp CSSSCHHHHHHHHHHHHH---CTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC-
T ss_pred CCCCCHHHHHHHHHHHHh---CcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHh
Confidence 456888888888899877 56555444322 22221 5 78899999976433
No 122
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Probab=23.59 E-value=2.3e+02 Score=31.50 Aligned_cols=60 Identities=22% Similarity=0.223 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCchhhhHHHHHHHHH
Q 005890 272 TTAQRQELQIKKAKLV-------------NMLDEVEQRYKQYHHQMQVVVSAFEQAAGFGSAKSYTALALRTIS 332 (671)
Q Consensus 272 s~~er~E~q~kk~kLl-------------~ml~EV~~rY~qy~~qm~~v~ssFe~~ag~~~a~~yt~lal~~iS 332 (671)
|..+|..+|.+++||. ..++|++++.+-.+.-.+..+..= -+.|.|++....+.+|+.+.
T Consensus 356 s~~~~e~l~erlakl~~~~~tI~lrG~te~~l~E~~r~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~ 428 (543)
T 1we3_A 356 SEYAREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEG-IVPGGGVTLLRAISAVEELI 428 (543)
T ss_dssp SHHHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhccC-cCCCccHHHHHHHHHHHHHh
Confidence 5568888999999983 678888888888887777777764 68999999888887777654
No 123
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=23.44 E-value=3.8e+02 Score=25.78 Aligned_cols=64 Identities=16% Similarity=0.185 Sum_probs=40.1
Q ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhhhhcCCchhhhHHHHHHHHHHHHhHHHHHHHH
Q 005890 269 FELTTAQRQELQIKKAKLVNMLDEVEQRYKQYHHQMQVVV--SAFEQAAGFGSAKSYTALALRTISKQFRCLKDAISA 344 (671)
Q Consensus 269 ~~ls~~er~E~q~kk~kLl~ml~EV~~rY~qy~~qm~~v~--ssFe~~ag~~~a~~yt~lal~~iSr~Fr~L~daI~~ 344 (671)
..|+++++++++.-..+...-..++.+.-..-+.||+.++ .+||++ +++++.+....|+..+..
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~Dea------------kI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTA------------KINAVAKEMESLGQKLDE 131 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHH------------HHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------------HHHHHHHHHHHHHHHHHH
Confidence 5689988888887777777766666666666677777665 345554 344545555555554443
No 124
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=22.72 E-value=52 Score=26.44 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=20.2
Q ss_pred HHHHHHHhCCChhhhhhhhhhhhh
Q 005890 423 KQQLAKQTGLTRSQVSNWFINARV 446 (671)
Q Consensus 423 K~~LA~~TGLS~kQVsNWFiNaRr 446 (671)
...||+.+|++...|+.|..+.+.
T Consensus 34 q~elA~~~gis~~~is~~e~g~~~ 57 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKID 57 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCGG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467999999999999999987653
No 125
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=22.55 E-value=85 Score=25.92 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=31.4
Q ss_pred CCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhh
Q 005890 394 QRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARV 446 (671)
Q Consensus 394 rR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRr 446 (671)
|+.|+.+.+...-.++.. . .......+|+.+|++...|.+|....+.
T Consensus 3 r~~ys~e~k~~~v~~~~~---~---~g~s~~~ia~~~gIs~~tl~rW~~~~~~ 49 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYEN---S---DGASLQQIANDLGINRVTLKNWIIKYGS 49 (97)
T ss_dssp CCCCCHHHHHHHHHHHTT---G---GGSCHHHHHHHHTSCHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHH---c---CCChHHHHHHHHCcCHHHHHHHHHHHhh
Confidence 456888776544444322 1 0123678999999999999999865554
No 126
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=22.39 E-value=42 Score=24.89 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=20.3
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 005890 423 KQQLAKQTGLTRSQVSNWFINAR 445 (671)
Q Consensus 423 K~~LA~~TGLS~kQVsNWFiNaR 445 (671)
...||+.+|++...|+.|..+.+
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998764
No 127
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=22.02 E-value=44 Score=24.95 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.3
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 005890 423 KQQLAKQTGLTRSQVSNWFINAR 445 (671)
Q Consensus 423 K~~LA~~TGLS~kQVsNWFiNaR 445 (671)
...||+.+|++...|+.|..+.+
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 56799999999999999998754
No 128
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=21.84 E-value=19 Score=33.36 Aligned_cols=46 Identities=17% Similarity=0.228 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcC
Q 005890 396 GLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLW 449 (671)
Q Consensus 396 ~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~k 449 (671)
.||+..+.+|...|.+. -.-.++|+.+|++...|..++..+|++++
T Consensus 198 ~L~~~~r~vl~l~~~~g--------~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 198 ELDERERLIVYLRYYKD--------QTQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp ------------------------------------------------------
T ss_pred hCCHHHHHHHHHHHhcC--------CCHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 58888889988766542 23467999999999999999999998874
No 129
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=21.79 E-value=45 Score=26.45 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=20.8
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 005890 423 KQQLAKQTGLTRSQVSNWFINAR 445 (671)
Q Consensus 423 K~~LA~~TGLS~kQVsNWFiNaR 445 (671)
...||+.+|++...|+.|..+.|
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 46899999999999999998865
No 130
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=21.33 E-value=44 Score=25.22 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=21.5
Q ss_pred HHHHHHHhCCChhhhhhhhhhhhh
Q 005890 423 KQQLAKQTGLTRSQVSNWFINARV 446 (671)
Q Consensus 423 K~~LA~~TGLS~kQVsNWFiNaRr 446 (671)
...||+.+|++...|+.|..+.+.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467999999999999999998765
No 131
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=20.47 E-value=52 Score=25.37 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=17.9
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 005890 423 KQQLAKQTGLTRSQVSNWFINAR 445 (671)
Q Consensus 423 K~~LA~~TGLS~kQVsNWFiNaR 445 (671)
...||+.+|++...|+.|..+.+
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35688888888888888887765
No 132
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=20.21 E-value=2.1e+02 Score=25.53 Aligned_cols=51 Identities=10% Similarity=0.044 Sum_probs=33.5
Q ss_pred CCCCChhHHHHHHHHHHHhhCCCCCCHHHHHH-HHHH------hCCChhhhhhhhhhhhhh
Q 005890 394 QRGLPERAVTILRAWLFEHFLHPYPKDSDKQQ-LAKQ------TGLTRSQVSNWFINARVR 447 (671)
Q Consensus 394 rR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~-LA~~------TGLS~kQVsNWFiNaRrR 447 (671)
++.++.+....+.+++.+ +|--+..+... |.+. ..++...|..|+...+..
T Consensus 81 ~~~~~~~~~~~I~~~~~~---~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~ 138 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQ---NPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQ 138 (159)
T ss_dssp CCCCCTTHHHHHHHHHHH---CSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHHHH---CccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhCC
Confidence 456788888888888877 56555544333 3222 147899999998765554
Done!