Query 005890
Match_columns 671
No_of_seqs 318 out of 1047
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 10:14:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005890.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005890hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pufb_ a.4.1.1 (B:) pbx1 {Hum 99.7 3.1E-18 2.2E-22 141.9 7.1 62 391-452 2-63 (73)
2 d1x2na1 a.4.1.1 (A:6-67) Homeo 99.7 3.4E-18 2.5E-22 138.0 6.4 59 391-449 3-61 (62)
3 d1k61a_ a.4.1.1 (A:) mat alpha 99.7 1.6E-17 1.1E-21 133.1 6.3 56 395-450 3-58 (60)
4 d1wi3a_ a.4.1.1 (A:) DNA-bindi 99.5 1.8E-14 1.3E-18 118.4 7.7 60 390-451 7-66 (71)
5 d2craa1 a.4.1.1 (A:7-64) Homeo 99.5 3.4E-14 2.5E-18 113.2 7.0 57 391-450 2-58 (58)
6 d2e1oa1 a.4.1.1 (A:8-64) Homeo 99.5 2.3E-14 1.7E-18 113.5 5.9 57 391-450 1-57 (57)
7 d1le8a_ a.4.1.1 (A:) Mating ty 99.5 3.5E-14 2.5E-18 110.9 6.5 53 394-449 1-53 (53)
8 d1bw5a_ a.4.1.1 (A:) Insulin g 99.5 5E-14 3.6E-18 114.6 7.4 60 390-452 3-62 (66)
9 d1au7a1 a.4.1.1 (A:103-160) Pi 99.4 5.8E-14 4.2E-18 111.5 7.0 56 392-450 1-56 (58)
10 d1ig7a_ a.4.1.1 (A:) Msx-1 hom 99.4 4.5E-14 3.3E-18 112.0 6.0 57 391-450 1-57 (58)
11 d1ocpa_ a.4.1.1 (A:) Oct-3 POU 99.4 4.6E-14 3.4E-18 115.3 6.2 59 390-451 8-66 (67)
12 d1vnda_ a.4.1.1 (A:) VND/NK-2 99.4 7.6E-14 5.6E-18 116.7 7.2 63 387-452 6-68 (77)
13 d1fjla_ a.4.1.1 (A:) Paired pr 99.4 5.8E-14 4.2E-18 113.8 6.2 58 391-451 3-60 (65)
14 d1p7ia_ a.4.1.1 (A:) Engrailed 99.4 8.1E-14 5.9E-18 108.7 6.7 53 392-447 1-53 (53)
15 d1pufa_ a.4.1.1 (A:) Homeobox 99.4 9.3E-14 6.8E-18 116.3 6.8 61 390-453 13-73 (77)
16 d1yz8p1 a.4.1.1 (P:1-60) Pitui 99.4 2.4E-14 1.7E-18 114.3 2.8 57 391-450 2-58 (60)
17 d2ecca1 a.4.1.1 (A:1-76) Homeo 99.4 9.2E-14 6.7E-18 115.5 6.1 57 392-451 5-61 (76)
18 d1e3oc1 a.4.1.1 (C:104-160) Oc 99.4 1.5E-13 1.1E-17 108.8 6.7 56 393-451 1-56 (57)
19 d1ftta_ a.4.1.1 (A:) Thyroid t 99.4 9.5E-14 6.9E-18 113.6 5.4 60 390-452 2-61 (68)
20 d1jgga_ a.4.1.1 (A:) Even-skip 99.4 1.3E-13 9.4E-18 109.1 5.9 56 392-450 1-56 (57)
21 d1zq3p1 a.4.1.1 (P:2-68) Homeo 99.4 9.6E-14 7E-18 113.2 5.2 59 391-452 2-60 (67)
22 d9anta_ a.4.1.1 (A:) Antennape 99.4 1.1E-13 8.2E-18 109.6 4.8 55 394-451 1-55 (56)
23 d2ecba1 a.4.1.1 (A:8-83) Zinc 99.4 2.5E-13 1.8E-17 113.0 6.8 58 392-452 6-63 (76)
24 d1b72a_ a.4.1.1 (A:) Homeobox 99.3 1.9E-13 1.4E-17 117.0 4.6 60 390-452 27-86 (88)
25 d2cuea1 a.4.1.1 (A:7-74) Paire 99.3 3.3E-13 2.4E-17 110.3 5.7 59 391-452 2-60 (68)
26 d1s7ea1 a.4.1.1 (A:103-152) He 99.3 3.4E-13 2.5E-17 103.7 3.2 50 393-445 1-50 (50)
27 d1x2ma1 a.4.1.1 (A:8-59) Lag1 99.3 7.4E-13 5.4E-17 103.2 5.2 51 398-450 1-51 (52)
28 d2cufa1 a.4.1.1 (A:8-89) Homeo 99.3 6.1E-13 4.4E-17 112.1 3.5 58 392-452 2-74 (82)
29 d1uhsa_ a.4.1.1 (A:) Homeodoma 99.3 1.4E-12 1E-16 107.9 5.4 58 391-450 2-59 (72)
30 d1wh7a_ a.4.1.1 (A:) ZF-HD hom 99.3 3E-12 2.2E-16 107.5 7.1 61 390-450 17-78 (80)
31 d2cqxa1 a.4.1.1 (A:8-66) LAG1 99.2 2.1E-12 1.5E-16 103.0 4.7 57 392-450 3-59 (59)
32 d1lfba_ a.4.1.1 (A:) Hepatocyt 99.1 1.6E-11 1.2E-15 102.8 5.9 56 394-452 1-77 (78)
33 d1ijwc_ a.4.1.2 (C:) HIN recom 65.9 2.5 0.00018 31.0 3.5 42 393-442 2-43 (47)
34 d1rp3a2 a.4.13.2 (A:164-234) S 65.5 1.2 8.4E-05 33.8 1.7 49 396-452 21-69 (71)
35 d1or7a1 a.4.13.2 (A:120-187) S 64.5 1.2 8.4E-05 33.9 1.5 48 396-451 18-65 (68)
36 d1hlva1 a.4.1.7 (A:1-66) DNA-b 63.5 7.2 0.00052 30.4 6.1 48 393-446 4-51 (66)
37 d1bl0a1 a.4.1.8 (A:9-62) MarA 41.2 7 0.00051 28.0 2.4 40 400-443 3-42 (54)
38 d1iufa1 a.4.1.7 (A:-2-75) Ars- 29.3 38 0.0027 27.2 5.1 37 391-443 6-42 (78)
No 1
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.72 E-value=3.1e-18 Score=141.90 Aligned_cols=62 Identities=42% Similarity=0.769 Sum_probs=58.8
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 391 WRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 391 kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
+|+|+.|+++++.+|+.||.+|..||||+.++|..||..|||+.+||.+||+|+|+|.|+..
T Consensus 2 rk~R~~~t~~q~~~Le~~f~~~~~~pYPs~~~k~~La~~~gl~~~qv~~WF~N~R~r~k~~~ 63 (73)
T d1pufb_ 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHCcCHHHhHHHHHHHHHHhcccc
Confidence 56777899999999999999999999999999999999999999999999999999998765
No 2
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.71 E-value=3.4e-18 Score=137.99 Aligned_cols=59 Identities=49% Similarity=0.890 Sum_probs=55.2
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcC
Q 005890 391 WRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLW 449 (671)
Q Consensus 391 kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~k 449 (671)
+|+|..||++++.+|+.||.+|..||||+.+||..||++|||+.+||.|||+|+|+|+.
T Consensus 3 krkR~~~~~~~~~iL~~wf~~~~~nPyPs~~e~~~La~~~~l~~~qI~~WF~N~R~R~l 61 (62)
T d1x2na1 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRIL 61 (62)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHhHHHHHHHHHHhc
Confidence 45556799999999999999999999999999999999999999999999999999974
No 3
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.68 E-value=1.6e-17 Score=133.10 Aligned_cols=56 Identities=29% Similarity=0.528 Sum_probs=53.6
Q ss_pred CCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCc
Q 005890 395 RGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWK 450 (671)
Q Consensus 395 R~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kK 450 (671)
++|+++++.+|+.||.+|..||||+.++|..||+.+||+.+||.+||+|+|+|.|+
T Consensus 3 ~Rft~~q~~~L~~~f~~~~~~pyPs~~e~~~La~~~gL~~~qV~~WF~N~R~r~K~ 58 (60)
T d1k61a_ 3 HRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHhHHhHhhcccccc
Confidence 45999999999999999999999999999999999999999999999999999875
No 4
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.49 E-value=1.8e-14 Score=118.42 Aligned_cols=60 Identities=20% Similarity=0.363 Sum_probs=54.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcc
Q 005890 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKP 451 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp 451 (671)
.+|+|..|+++++.+|+.||.+. +|||+.+++..||+++||+..||.+||+|+|+|.|+.
T Consensus 7 ~~r~R~~~t~~Q~~~Le~~F~~~--~~~P~~~~~~~La~~lgl~~~qV~~WFqNrR~k~kk~ 66 (71)
T d1wi3a_ 7 GPRSRTKISLEALGILQSFIHDV--GLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHS 66 (71)
T ss_dssp CCCCCCCCCSHHHHHHHHHHHHH--CSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCSS
T ss_pred CCCCCccCCHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHhCCCHHHHHHHhHhhHhhhccc
Confidence 45677789999999999999752 8999999999999999999999999999999999873
No 5
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.46 E-value=3.4e-14 Score=113.16 Aligned_cols=57 Identities=18% Similarity=0.303 Sum_probs=53.6
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCc
Q 005890 391 WRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWK 450 (671)
Q Consensus 391 kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kK 450 (671)
+|+|..|+.+++.+|+..|.. +|||+.+++..||..+||++.||.+||+|+|.|.||
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNrR~k~kk 58 (58)
T d2craa1 2 RKKRIPYSKGQLRELEREYAA---NKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58 (58)
T ss_dssp CCSCCCSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCHHHeeecccchhhhccC
Confidence 456667999999999999999 999999999999999999999999999999999886
No 6
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.46 E-value=2.3e-14 Score=113.45 Aligned_cols=57 Identities=23% Similarity=0.323 Sum_probs=53.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCc
Q 005890 391 WRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWK 450 (671)
Q Consensus 391 kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kK 450 (671)
|++|..|+++++.+|+.+|.. +|||+.+++..||..+||+..||.+||+|+|.|.||
T Consensus 1 k~~R~~ft~~Q~~~Le~~F~~---n~yp~~~~r~~LA~~l~L~~~qV~~WFqNrR~k~kk 57 (57)
T d2e1oa1 1 KGGQVRFSNDQTIELEKKFET---QKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57 (57)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhhHhhhhhhhhccC
Confidence 467778999999999999998 999999999999999999999999999999999864
No 7
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.46 E-value=3.5e-14 Score=110.93 Aligned_cols=53 Identities=28% Similarity=0.445 Sum_probs=50.4
Q ss_pred CCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcC
Q 005890 394 QRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLW 449 (671)
Q Consensus 394 rR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~k 449 (671)
|..|+++++.+|+++|.. +|||+.+++..||+.+||+++||.+||+|+|.|.|
T Consensus 1 Rt~~s~~q~~~Le~~F~~---~~~P~~~~~~~LA~~lgl~~~qV~~WFqNrR~k~K 53 (53)
T d1le8a_ 1 KSSISPQARAFLEQVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53 (53)
T ss_dssp CCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHCCCHHHHHHHHHhhhhccC
Confidence 456999999999999998 89999999999999999999999999999999975
No 8
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.45 E-value=5e-14 Score=114.63 Aligned_cols=60 Identities=30% Similarity=0.401 Sum_probs=55.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
.+|.|..|+++++.+|+.+|.. +|||+.+++..||.++||+..||.+||+|+|.|.|+..
T Consensus 3 ~kR~Rt~~t~~Q~~~Le~~F~~---n~~Ps~~~~~~LA~~l~l~~~~V~~WFqNrR~k~kk~~ 62 (66)
T d1bw5a_ 3 TTRVRTVLNEKQLHTLRTCYAA---NPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCcCcCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHcCcCHHHhhhhhHhHHHHHHHHH
Confidence 4566777999999999999998 99999999999999999999999999999999998754
No 9
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.44 E-value=5.8e-14 Score=111.51 Aligned_cols=56 Identities=23% Similarity=0.359 Sum_probs=53.2
Q ss_pred CCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCc
Q 005890 392 RPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWK 450 (671)
Q Consensus 392 RkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kK 450 (671)
|+|..|+.+++.+|+.+|.. +|||+.+++..||..+||++.||.+||+|+|.|.|+
T Consensus 1 r~Rt~~s~~q~~~Le~~F~~---~~~P~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kr 56 (58)
T d1au7a1 1 KRRTTISIAAKDALERHFGE---HSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 56 (58)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHH---ccCCCHHHHHHHHHHhCCCHHHHHHHHHHHhHHHHh
Confidence 45667999999999999998 999999999999999999999999999999999986
No 10
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.44 E-value=4.5e-14 Score=111.96 Aligned_cols=57 Identities=19% Similarity=0.367 Sum_probs=53.5
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCc
Q 005890 391 WRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWK 450 (671)
Q Consensus 391 kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kK 450 (671)
+|+|..|+.+++.+|+..|.+ +|||+.+++..||..+||+++||.+||+|+|.|.||
T Consensus 1 rr~Rt~ft~~Ql~~Le~~F~~---~~yP~~~~r~~LA~~l~l~~~~V~~WFqNrR~k~kr 57 (58)
T d1ig7a_ 1 RKPRTPFTTAQLLALERKFRQ---KQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCChhheeecCcchHhHhcc
Confidence 356677999999999999999 999999999999999999999999999999999875
No 11
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.44 E-value=4.6e-14 Score=115.29 Aligned_cols=59 Identities=24% Similarity=0.367 Sum_probs=54.7
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcc
Q 005890 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKP 451 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp 451 (671)
++|+|..|+++++.+|+.+|.. +|||+.+++..||..+||++.||.+||+|+|.|.||.
T Consensus 8 ~rr~Rt~~t~~q~~~Le~~F~~---n~~P~~~~r~~La~~~~l~~~~V~~WFqNrR~k~Kk~ 66 (67)
T d1ocpa_ 8 RKRKRTSIENRVRWSLETMFLK---CPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKRS 66 (67)
T ss_dssp SSSCCSSCCHHHHHHHHHHHSS---CSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHSSSSSC
T ss_pred cCCCCCCCCHHHHHHHHHHHHH---ccCCCHHHHHHHHHHHcCCHHHHHHHhHHHHHHHhcC
Confidence 4566667999999999999988 9999999999999999999999999999999999874
No 12
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.43 E-value=7.6e-14 Score=116.72 Aligned_cols=63 Identities=19% Similarity=0.272 Sum_probs=56.4
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 387 QHHAWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 387 q~~~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
+..++|+|..|+++++.+|+.+|.. +|||+.+++..||..+||++.||.+||+|+|.|.|+..
T Consensus 6 p~k~rr~Rt~ft~~Q~~~Le~~F~~---~~yP~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~ 68 (77)
T d1vnda_ 6 PNKKRKRRVLFTKAQTYELERRFRQ---QRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQ 68 (77)
T ss_dssp SSSSCSSCCCCCTTHHHHHHHHHHH---CSCCCHHHHHHHHHHHTCCHHHHHHHHHHSSSSCSSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCChhhhhhcchhHHHHHHHHh
Confidence 3344556667999999999999999 99999999999999999999999999999999998754
No 13
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.43 E-value=5.8e-14 Score=113.84 Aligned_cols=58 Identities=28% Similarity=0.459 Sum_probs=53.8
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcc
Q 005890 391 WRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKP 451 (671)
Q Consensus 391 kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp 451 (671)
+|+|..|+++++.+|+.+|.+ +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~---n~yPs~~~r~~LA~~lgl~~~~V~~WFqNrR~k~kk~ 60 (65)
T d1fjla_ 3 RRSRTTFSASQLDELERAFER---TQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQ 60 (65)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH---cCCCChHHHHHHHHHhCCCHHHhhHhhhhHHHHHHhc
Confidence 455666999999999999999 9999999999999999999999999999999998864
No 14
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]}
Probab=99.43 E-value=8.1e-14 Score=108.73 Aligned_cols=53 Identities=30% Similarity=0.577 Sum_probs=50.4
Q ss_pred CCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhh
Q 005890 392 RPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVR 447 (671)
Q Consensus 392 RkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR 447 (671)
|+|..|+++++.+|+..|.. +|||+.+++..||..+||++.||.+||+|+|.|
T Consensus 1 R~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~lgL~~~qV~vWFqNrRaK 53 (53)
T d1p7ia_ 1 RPRTAFSSEQLARLKREFNE---NRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53 (53)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred CCCccCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCChHHhhhcccccCCC
Confidence 56778999999999999999 999999999999999999999999999999986
No 15
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.42 E-value=9.3e-14 Score=116.33 Aligned_cols=61 Identities=20% Similarity=0.249 Sum_probs=56.0
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcchh
Q 005890 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPMV 453 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~i 453 (671)
.+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+...
T Consensus 13 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yPs~~~r~~LA~~l~l~~~qV~iWFqNrR~k~kr~~~ 73 (77)
T d1pufa_ 13 TRKKRCPYTKHQTLELEKEFLF---NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp TSCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCCHHHhhhhhhhhHHHHHHHHH
Confidence 4556667999999999999999 999999999999999999999999999999999987553
No 16
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.41 E-value=2.4e-14 Score=114.29 Aligned_cols=57 Identities=28% Similarity=0.444 Sum_probs=53.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCc
Q 005890 391 WRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWK 450 (671)
Q Consensus 391 kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kK 450 (671)
+|+|..|+++++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~---~~yP~~~~r~~LA~~l~l~~~~V~~WFqNrR~k~kr 58 (60)
T d1yz8p1 2 RRQRTHFTSQQLQQLEATFQR---NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRK 58 (60)
T ss_dssp SCSCCCCCHHHHHHHHHHHTT---CSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH---cCCCChHHHHHHHHHHCCChHHHHHHhHHHHHHHHh
Confidence 466777999999999999988 999999999999999999999999999999999876
No 17
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.41 E-value=9.2e-14 Score=115.49 Aligned_cols=57 Identities=23% Similarity=0.490 Sum_probs=53.0
Q ss_pred CCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcc
Q 005890 392 RPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKP 451 (671)
Q Consensus 392 RkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp 451 (671)
+++++++++++.+|+.||.. +|||+.+++..||..|||++.||.+||+|+|.|.|+.
T Consensus 5 s~~~r~T~eQ~~~Le~~F~~---n~~Ps~~~~~~La~~~gL~~~qV~~WF~NrR~k~k~~ 61 (76)
T d2ecca1 5 SSGKRKTKEQLAILKSFFLQ---CQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc
Confidence 45567899999999999998 9999999999999999999999999999999998864
No 18
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.40 E-value=1.5e-13 Score=108.84 Aligned_cols=56 Identities=18% Similarity=0.308 Sum_probs=52.6
Q ss_pred CCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcc
Q 005890 393 PQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKP 451 (671)
Q Consensus 393 krR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp 451 (671)
+|+.|+.+++.+|+.+|.. +|||+.+++..||..+||++.||.+||+|+|.|.||.
T Consensus 1 kRT~~~~~q~~~Le~~F~~---~~~P~~~~~~~LA~~lgL~~~qV~~WFqNrR~k~kk~ 56 (57)
T d1e3oc1 1 KRTSIETNIRVALEKSFME---NQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 56 (57)
T ss_dssp CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHcc
Confidence 3566999999999999998 9999999999999999999999999999999999873
No 19
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.40 E-value=9.5e-14 Score=113.63 Aligned_cols=60 Identities=22% Similarity=0.322 Sum_probs=55.5
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
++|+|..|+++++.+|++.|.. +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 2 krr~Rt~ft~~Ql~~Le~~F~~---~~yPs~~~r~~LA~~l~L~~~~V~~WFqNrR~k~kk~~ 61 (68)
T d1ftta_ 2 RRKRRVLFSQAQVYELERRFKQ---QKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCCccceeeecccHHHHHhhcc
Confidence 3566677999999999999999 99999999999999999999999999999999998754
No 20
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.39 E-value=1.3e-13 Score=109.14 Aligned_cols=56 Identities=21% Similarity=0.366 Sum_probs=53.2
Q ss_pred CCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCc
Q 005890 392 RPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWK 450 (671)
Q Consensus 392 RkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kK 450 (671)
|+|..|+++++.+|+..|.. +|||+..++..||..+||++.||.+||+|+|.|.||
T Consensus 1 R~Rt~fT~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~lgl~~~qV~vWFqNrR~k~kk 56 (57)
T d1jgga_ 1 RYRTAFTRDQLGRLEKEFYK---ENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 56 (57)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCChhHhhhcchhhhhhhhc
Confidence 56677999999999999999 999999999999999999999999999999999876
No 21
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.39 E-value=9.6e-14 Score=113.24 Aligned_cols=59 Identities=20% Similarity=0.286 Sum_probs=54.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 391 WRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 391 kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 2 rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~~V~iWFqNrR~k~kk~~ 60 (67)
T d1zq3p1 2 RRTRTTFTSSQIAELEQHFLQ---GRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 60 (67)
T ss_dssp SCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCCccceeeccccHHHhHhhhh
Confidence 466677999999999999998 99999999999999999999999999999999998643
No 22
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]}
Probab=99.38 E-value=1.1e-13 Score=109.61 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=51.9
Q ss_pred CCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcc
Q 005890 394 QRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKP 451 (671)
Q Consensus 394 rR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp 451 (671)
|..|+++++.+|+.+|.. +|||+.+++..||+.+||++.||.+||+|+|.|.||.
T Consensus 1 Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~~V~iWFQNrRak~kk~ 55 (56)
T d9anta_ 1 RQTYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 55 (56)
T ss_dssp CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCcCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCChhHeeeccccchhhhhhc
Confidence 456999999999999988 9999999999999999999999999999999998874
No 23
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.38 E-value=2.5e-13 Score=112.99 Aligned_cols=58 Identities=19% Similarity=0.299 Sum_probs=52.2
Q ss_pred CCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 392 RPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 392 RkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
++++.++++++.+|+.+|.. +|||+.+++..||..+||+..||.+||+|+|+|.++..
T Consensus 6 ~k~k~~T~~Q~~~Le~~F~~---~~~P~~~~r~~LA~~l~l~~~~V~~WFqNrR~r~k~~~ 63 (76)
T d2ecba1 6 QKFKEKTAEQLRVLQASFLN---SSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCCHHHHHHhHHHHHHHHHHHh
Confidence 34455799999999999998 99999999999999999999999999999999876543
No 24
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.35 E-value=1.9e-13 Score=117.02 Aligned_cols=60 Identities=22% Similarity=0.279 Sum_probs=53.6
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
.+|+|..|+.+++.+|+.+|.. +|||+.+++..||..+||+..||.+||+|+|.|.||..
T Consensus 27 ~kr~Rt~ft~~Ql~~Le~~F~~---n~yPs~~~r~~LA~~l~l~~~~V~vWFqNrR~k~Kk~~ 86 (88)
T d1b72a_ 27 PSGLRTNFTTRQLTELEKEFHF---NKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 86 (88)
T ss_dssp ---CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCCHHHHHHHHHHHHh---CCCCchHHHHHHHHHcCCCHHHeeeccHhHHHHHHHhc
Confidence 3456667999999999999998 99999999999999999999999999999999998753
No 25
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.34 E-value=3.3e-13 Score=110.28 Aligned_cols=59 Identities=19% Similarity=0.367 Sum_probs=55.2
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 391 WRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 391 kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
+|+|..|+++++.+|+..|.. +|||+..++..||..+||++.+|.+||+|+|.|.++..
T Consensus 2 rR~Rt~ft~~Ql~~Le~~F~~---n~yP~~~~r~~LA~~l~L~~~~V~~WFqNrR~k~kr~~ 60 (68)
T d2cuea1 2 QRNRTSFTQEQIEALEKEFER---THYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREE 60 (68)
T ss_dssp CCCCCCSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcChhheeecCcchhHHHHhhh
Confidence 466777999999999999998 99999999999999999999999999999999998754
No 26
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.30 E-value=3.4e-13 Score=103.73 Aligned_cols=50 Identities=32% Similarity=0.430 Sum_probs=47.8
Q ss_pred CCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhh
Q 005890 393 PQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINAR 445 (671)
Q Consensus 393 krR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaR 445 (671)
+|..|+++++.+|+++|.. +|||+.+++..||+.+||+.+||.+||+|+|
T Consensus 1 PRt~ft~~Q~~~Le~~F~~---n~~P~~~~~~~LA~~l~l~~~~V~~WFqNrR 50 (50)
T d1s7ea1 1 PRLVFTDVQRRTLHAIFKE---NKRPSKELQITISQQLGLELSTVSNFFMNAR 50 (50)
T ss_dssp CCSCCCHHHHHHHHHHTTS---SCSSTHHHHHHHHTTSCSSSHHHHHHHHHCC
T ss_pred CCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCcCHHHhhhcCCcCc
Confidence 4678999999999999987 9999999999999999999999999999998
No 27
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.30 E-value=7.4e-13 Score=103.18 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=47.2
Q ss_pred ChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCc
Q 005890 398 PERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWK 450 (671)
Q Consensus 398 pk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kK 450 (671)
+.++..+|+.||.++ +|||+.+++..||+++||+.+||.+||+|+|.|.|+
T Consensus 1 T~~q~~iLE~~F~~~--~~~P~~~~~~~LA~~~~ls~~qV~~WFqNrR~k~k~ 51 (52)
T d1x2ma1 1 TAQPNAILEKVFTAI--TKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 51 (52)
T ss_dssp SSCHHHHHHHHHHTT--CSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred ChhHHHHHHHHHHHc--CCCcCHHHHHHHHHHHCcCHHHHHHHHHhhhcccCc
Confidence 457899999999874 799999999999999999999999999999999986
No 28
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.28 E-value=6.1e-13 Score=112.14 Aligned_cols=58 Identities=19% Similarity=0.476 Sum_probs=53.5
Q ss_pred CCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhC---------------CChhhhhhhhhhhhhhcCcch
Q 005890 392 RPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTG---------------LTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 392 RkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TG---------------LS~kQVsNWFiNaRrR~kKp~ 452 (671)
|+|..|+++++.+|+.+|.+ +|||+..+|..||+.+| |+..+|.+||+|+|.|.|+..
T Consensus 2 r~R~~ft~~Ql~~LE~~F~~---n~yP~~~~R~~LA~~~~~~~~~~~~~~~~~~~l~~~~V~vWFqNRR~k~kk~~ 74 (82)
T d2cufa1 2 GSRFTWRKECLAVMESYFNE---NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 74 (82)
T ss_dssp CCSCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhccccccccccchhccCCCHHHHHHHHhhhHHHHHHhh
Confidence 56667999999999999999 99999999999999885 999999999999999998854
No 29
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.27 E-value=1.4e-12 Score=107.93 Aligned_cols=58 Identities=21% Similarity=0.295 Sum_probs=53.1
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCc
Q 005890 391 WRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWK 450 (671)
Q Consensus 391 kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kK 450 (671)
+|++..|+++++.+|+..|.. .++||+..+|..||+.+||++.||.+||+|+|.|.+|
T Consensus 2 ~~~r~~fT~~Ql~~Le~~F~~--~n~yP~~~~r~~LA~~lgL~~~~VqvWFqNrRak~rk 59 (72)
T d1uhsa_ 2 SEGAATMTEDQVEILEYNFNK--VNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRR 59 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHS--SCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH--ccccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 467778999999999999874 2789999999999999999999999999999999876
No 30
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.26 E-value=3e-12 Score=107.46 Aligned_cols=61 Identities=15% Similarity=0.086 Sum_probs=54.6
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCc
Q 005890 390 AWRPQRGLPERAVTILRAWLFEHF-LHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWK 450 (671)
Q Consensus 390 ~kRkrR~Lpk~~~~iLr~Wf~eH~-~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kK 450 (671)
++|+|..|+.++++.|+.+|.+.+ .+|||+.+++..||+++||++.||.+||+|+|.+.|+
T Consensus 17 ~kR~Rt~ft~~Q~~~L~~~fe~~~~~~~~p~~~~~~~la~~~gl~~~~i~vWFqN~R~~~k~ 78 (80)
T d1wh7a_ 17 TKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCccccCCHHHHHHHHHHHHHhcccccCcCHHHHHHHHHHHCCCHHHeeeecccCcCCCCC
Confidence 455666799999999999888654 4899999999999999999999999999999998875
No 31
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.24 E-value=2.1e-12 Score=102.97 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=50.3
Q ss_pred CCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCc
Q 005890 392 RPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWK 450 (671)
Q Consensus 392 RkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kK 450 (671)
|.+..+..++..+|+.+|..+ +|||+.+++..||+++||++.||.+||+|+|.+.|.
T Consensus 3 k~~~~~k~~~~~iLE~~F~~~--~~yPs~~~~~~LA~~lgls~~qV~~WFqNrR~k~rp 59 (59)
T d2cqxa1 3 KDSPVNKVEPNDTLEKVFVSV--TKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKP 59 (59)
T ss_dssp CCCCCSCSCSTTHHHHHHHHT--CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCccccHHHHHHHHHc--CCCcCHHHHHHHHHHHCcCHHHHHHHHHhhhcccCc
Confidence 344567888889999999763 799999999999999999999999999999999763
No 32
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]}
Probab=99.14 E-value=1.6e-11 Score=102.84 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=51.6
Q ss_pred CCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhC---------------------CChhhhhhhhhhhhhhcCcch
Q 005890 394 QRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTG---------------------LTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 394 rR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TG---------------------LS~kQVsNWFiNaRrR~kKp~ 452 (671)
|..|++.++.+|+++|.+ +|||+..+|..||++++ |++.+|.|||+|+|+|.|+..
T Consensus 1 R~~~tp~Ql~~Le~~F~~---n~yPs~~~Re~LA~~ln~~~~~~~~~~~~~~~~~~~~~vt~~~V~~WF~NRR~~~kr~~ 77 (78)
T d1lfba_ 1 RFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFRH 77 (78)
T ss_dssp CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSCCC
T ss_pred CccCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhchhhhccccccccccccccccCCCHHHHHHHHHHHHHHHHHhc
Confidence 457999999999999999 99999999999999994 899999999999999998753
No 33
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=65.86 E-value=2.5 Score=30.99 Aligned_cols=42 Identities=21% Similarity=0.223 Sum_probs=35.7
Q ss_pred CCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhh
Q 005890 393 PQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFI 442 (671)
Q Consensus 393 krR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFi 442 (671)
+++.|++++.+..++++.. .. -+..+|+.+|++..-|-.||.
T Consensus 2 R~~~lt~~q~~~a~~l~~~----G~----s~~~iA~~~gVSr~TiYry~p 43 (47)
T d1ijwc_ 2 RPRAINKHEQEQISRLLEK----GH----PRQQLAIIFGIGVSTLYRYFP 43 (47)
T ss_dssp CCCSSCHHHHHHHHHHHHT----TC----CHHHHHHHHTCCHHHHHHHSC
T ss_pred CCCcCCHHHHHHHHHHHHC----CC----CHHHHHHHHCcCHHHHHhhCC
Confidence 3457999999999999875 32 388999999999999999994
No 34
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=65.55 E-value=1.2 Score=33.75 Aligned_cols=49 Identities=27% Similarity=0.314 Sum_probs=41.6
Q ss_pred CCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcch
Q 005890 396 GLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKPM 452 (671)
Q Consensus 396 ~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp~ 452 (671)
.||+..+.++...|++. -.-.++|+.+|++...|.++...+|+++++-+
T Consensus 21 ~L~~~~r~v~~l~~~~~--------~s~~eIA~~lgis~~tv~~~~~ra~~~Lr~~L 69 (71)
T d1rp3a2 21 KLPEREKLVIQLIFYEE--------LPAKEVAKILETSVSRVSQLKAKALERLREML 69 (71)
T ss_dssp TSCHHHHHHHHHHHTSC--------CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhHh--------CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHc
Confidence 58999999998887763 34578999999999999999999999987643
No 35
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=64.45 E-value=1.2 Score=33.92 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=40.2
Q ss_pred CCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcCcc
Q 005890 396 GLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKP 451 (671)
Q Consensus 396 ~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRrR~kKp 451 (671)
.||+..+.++.-+|++. . .-.++|+.+|++...|.++...+|+++++-
T Consensus 18 ~Lp~~~r~v~~l~~~~~--~------s~~eIA~~lgis~~tv~~~l~ra~~~Lr~~ 65 (68)
T d1or7a1 18 SLPEDLRMAITLRELDG--L------SYEEIAAIMDCPVGTVRSRIFRAREAIDNK 65 (68)
T ss_dssp HSCHHHHHHHHHHHTTC--C------CHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhC--C------CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 48999999998888773 2 246899999999999999999999988753
No 36
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=63.49 E-value=7.2 Score=30.43 Aligned_cols=48 Identities=23% Similarity=0.260 Sum_probs=33.5
Q ss_pred CCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhh
Q 005890 393 PQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARV 446 (671)
Q Consensus 393 krR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiNaRr 446 (671)
+|+.|+-+.+..+-..+.. +|-.+ +..+|+..|+....|++|..|+..
T Consensus 4 kRk~LT~~eK~~ii~~~e~---g~k~s---q~eIA~~fGv~~STvs~IlKnK~k 51 (66)
T d1hlva1 4 KRRQLTFREKSRIIQEVEE---NPDLR---KGEIARRFNIPPSTLSTILKNKRA 51 (66)
T ss_dssp SSCCCCHHHHHHHHHHHHH---CTTSC---HHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred ccccCCHHHHHHHHHHHHc---CCcch---HHHHHHHhCCChhHHHHHHHHHHH
Confidence 4556877665444445555 44222 567999999999999999999543
No 37
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=41.17 E-value=7 Score=28.02 Aligned_cols=40 Identities=10% Similarity=0.379 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 005890 400 RAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFIN 443 (671)
Q Consensus 400 ~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiN 443 (671)
.....+.+|+.+|+..| -.-..||+..|+++..+..+|+.
T Consensus 3 ~~i~~v~~yI~~~~~~~----~tl~~lA~~~~~s~~~l~r~Fk~ 42 (54)
T d1bl0a1 3 ITIHSILDWIEDNLESP----LSLEKVSERSGYSKWHLQRMFKK 42 (54)
T ss_dssp HHHHHHHHHHHTTTTSC----CCCHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCC----CCHHHHHHHHCcCHHHHHHHHHH
Confidence 34667778999988777 34567999999999999999975
No 38
>d1iufa1 a.4.1.7 (A:-2-75) Ars-binding protein 1, ABP1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=29.27 E-value=38 Score=27.17 Aligned_cols=37 Identities=22% Similarity=0.472 Sum_probs=26.5
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 005890 391 WRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFIN 443 (671)
Q Consensus 391 kRkrR~Lpk~~~~iLr~Wf~eH~~nPYPS~~EK~~LA~~TGLS~kQVsNWFiN 443 (671)
+.+|+.++-+++..|++|+.. .+|.|+ .+.+.-||.-
T Consensus 6 ~~~R~aIs~~qK~ALR~~~~~--~~~~~s--------------qk~l~~WFe~ 42 (78)
T d1iufa1 6 KIKRRAITEHEKRALRHYFFQ--LQNRSG--------------QQDLIEWFRE 42 (78)
T ss_dssp CCSSSCCCSHHHHHHHHHHHS--SSSCCC--------------HHHHHHHHHH
T ss_pred ccccccCCHHHHHHHHHHHHh--cCCCcc--------------HHHHHHHHHH
Confidence 344556999999999999755 378765 4556668853
Done!